Query 002014
Match_columns 982
No_of_seqs 622 out of 3619
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:43:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002014.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002014hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o6n_A APL1; leucine-rich repe 99.9 4.4E-25 1.5E-29 248.0 18.4 294 25-328 44-357 (390)
2 3v47_A TOLL-like receptor 5B a 99.9 8.7E-25 3E-29 249.3 17.2 300 24-327 28-412 (455)
3 3oja_B Anopheles plasmodium-re 99.9 1.7E-24 5.7E-29 258.0 18.9 294 25-328 50-363 (597)
4 2id5_A Lingo-1, leucine rich r 99.9 2.2E-24 7.4E-29 248.4 17.2 280 23-329 29-339 (477)
5 4fmz_A Internalin; leucine ric 99.9 3.5E-23 1.2E-27 228.0 24.4 275 24-323 42-324 (347)
6 2id5_A Lingo-1, leucine rich r 99.9 5.5E-24 1.9E-28 245.0 18.6 288 23-324 53-357 (477)
7 3zyi_A Leucine-rich repeat-con 99.9 4.8E-24 1.6E-28 245.0 16.9 227 87-327 75-307 (452)
8 3zyj_A Leucine-rich repeat-con 99.9 4.3E-24 1.5E-28 244.5 16.1 238 76-329 55-298 (440)
9 3t6q_A CD180 antigen; protein- 99.9 2.1E-23 7.1E-28 246.8 19.8 291 27-331 255-568 (606)
10 4fmz_A Internalin; leucine ric 99.9 1.4E-22 4.8E-27 223.2 23.9 274 25-323 65-346 (347)
11 3v47_A TOLL-like receptor 5B a 99.9 3E-23 1E-27 236.6 17.8 276 24-300 52-412 (455)
12 1xku_A Decorin; proteoglycan, 99.9 7.3E-23 2.5E-27 224.8 19.9 267 27-324 32-307 (330)
13 3zyj_A Leucine-rich repeat-con 99.9 3E-23 1E-27 237.5 17.4 228 65-302 66-298 (440)
14 4eco_A Uncharacterized protein 99.9 1.1E-23 3.9E-28 253.1 14.4 287 28-323 83-470 (636)
15 2z7x_B TOLL-like receptor 1, v 99.9 6.9E-23 2.3E-27 238.2 20.1 178 165-349 321-510 (520)
16 3rgz_A Protein brassinosteroid 99.9 1.8E-23 6.1E-28 256.3 15.9 285 26-324 343-718 (768)
17 3zyi_A Leucine-rich repeat-con 99.9 4E-23 1.4E-27 237.3 17.7 228 65-302 77-309 (452)
18 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-22 3.9E-27 237.3 20.9 155 167-327 333-514 (549)
19 4eco_A Uncharacterized protein 99.9 1.2E-23 4E-28 252.9 12.9 243 66-323 209-501 (636)
20 4ecn_A Leucine-rich repeat pro 99.9 7.1E-23 2.4E-27 254.6 19.9 288 28-323 325-710 (876)
21 1ziw_A TOLL-like receptor 3; i 99.9 2E-22 6.9E-27 241.8 22.2 295 28-326 250-625 (680)
22 1ogq_A PGIP-2, polygalacturona 99.9 7.8E-24 2.7E-28 232.4 8.1 245 64-324 51-305 (313)
23 1xku_A Decorin; proteoglycan, 99.9 1.7E-22 5.7E-27 221.9 18.6 252 51-324 18-277 (330)
24 1o6v_A Internalin A; bacterial 99.9 2.9E-22 9.8E-27 231.1 21.1 269 25-324 45-323 (466)
25 2ft3_A Biglycan; proteoglycan, 99.9 9.9E-23 3.4E-27 224.2 15.8 263 27-324 34-308 (332)
26 2z66_A Variable lymphocyte rec 99.9 9E-23 3.1E-27 221.5 15.1 237 76-328 19-266 (306)
27 3t6q_A CD180 antigen; protein- 99.9 4.2E-22 1.4E-26 235.6 21.5 127 25-151 56-195 (606)
28 1ogq_A PGIP-2, polygalacturona 99.9 4.7E-24 1.6E-28 234.2 3.6 246 26-298 50-306 (313)
29 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-22 4E-27 218.7 14.4 214 76-301 23-243 (285)
30 1o6v_A Internalin A; bacterial 99.9 9.3E-22 3.2E-26 226.8 22.2 262 23-324 65-345 (466)
31 4ecn_A Leucine-rich repeat pro 99.9 1.3E-22 4.5E-27 252.2 15.9 259 36-323 435-741 (876)
32 3vq2_A TLR4, TOLL-like recepto 99.9 2.2E-22 7.5E-27 238.0 17.1 152 168-323 285-461 (606)
33 3o53_A Protein LRIM1, AGAP0063 99.9 7E-23 2.4E-27 224.8 11.8 236 67-326 14-253 (317)
34 2z66_A Variable lymphocyte rec 99.9 3.6E-23 1.2E-27 224.6 9.3 267 29-323 10-287 (306)
35 3rgz_A Protein brassinosteroid 99.9 1.6E-22 5.5E-27 247.9 15.9 243 68-324 373-694 (768)
36 2ft3_A Biglycan; proteoglycan, 99.9 2.5E-22 8.7E-27 221.0 14.7 237 66-325 36-279 (332)
37 2z80_A TOLL-like receptor 2, v 99.9 1.7E-22 5.9E-27 224.1 13.5 272 29-327 34-318 (353)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 2.6E-21 8.8E-26 228.1 24.1 161 165-331 350-518 (562)
39 3vq2_A TLR4, TOLL-like recepto 99.9 2.1E-22 7.2E-27 238.2 14.1 270 25-329 284-564 (606)
40 3o6n_A APL1; leucine-rich repe 99.9 6.5E-22 2.2E-26 222.2 17.1 238 68-323 50-331 (390)
41 1ziw_A TOLL-like receptor 3; i 99.9 4.6E-22 1.6E-26 238.8 16.3 270 23-300 326-626 (680)
42 4g8a_A TOLL-like receptor 4; l 99.9 4E-21 1.4E-25 226.0 22.6 141 209-353 465-614 (635)
43 2z81_A CD282 antigen, TOLL-lik 99.9 1.1E-21 3.8E-26 228.9 16.3 135 165-300 358-514 (549)
44 3oja_B Anopheles plasmodium-re 99.9 1.5E-21 5E-26 232.6 17.4 227 82-325 70-339 (597)
45 2z63_A TOLL-like receptor 4, v 99.9 2E-21 6.7E-26 227.3 18.2 136 187-326 392-534 (570)
46 2z7x_B TOLL-like receptor 1, v 99.9 3.6E-21 1.2E-25 223.7 19.9 129 188-323 321-457 (520)
47 2z63_A TOLL-like receptor 4, v 99.9 1.3E-21 4.6E-26 228.7 16.0 154 166-323 280-458 (570)
48 1wwl_A Monocyte differentiatio 99.9 3.5E-22 1.2E-26 218.7 9.7 219 68-324 68-310 (312)
49 1p9a_G Platelet glycoprotein I 99.9 6.7E-21 2.3E-25 207.5 19.2 203 83-301 6-213 (290)
50 3oja_A Leucine-rich immune mol 99.9 8.3E-22 2.8E-26 229.9 12.5 217 86-326 33-253 (487)
51 3j0a_A TOLL-like receptor 5; m 99.9 6.6E-21 2.2E-25 236.0 19.9 291 24-323 22-394 (844)
52 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-22 4.7E-27 222.4 3.9 229 65-317 36-269 (317)
53 2z80_A TOLL-like receptor 2, v 99.8 3.4E-22 1.2E-26 221.8 6.4 254 23-300 49-318 (353)
54 2z62_A TOLL-like receptor 4, v 99.8 3.5E-21 1.2E-25 206.1 13.9 204 87-300 28-241 (276)
55 4fcg_A Uncharacterized protein 99.8 3.3E-21 1.1E-25 213.3 13.3 227 66-297 84-315 (328)
56 4fcg_A Uncharacterized protein 99.8 7.5E-21 2.6E-25 210.5 15.9 224 85-324 79-315 (328)
57 2o6q_A Variable lymphocyte rec 99.8 2.7E-20 9.1E-25 199.5 19.1 196 68-300 21-222 (270)
58 3oja_A Leucine-rich immune mol 99.8 7.6E-22 2.6E-26 230.3 7.6 236 31-298 12-252 (487)
59 1ozn_A Reticulon 4 receptor; N 99.8 3.4E-20 1.2E-24 199.5 19.7 233 89-337 13-252 (285)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 8.8E-21 3E-25 223.5 16.0 135 164-301 373-515 (562)
61 3j0a_A TOLL-like receptor 5; m 99.8 4.3E-20 1.5E-24 228.7 20.4 271 22-298 44-396 (844)
62 3bz5_A Internalin-J, INLJ; leu 99.8 1.3E-19 4.5E-24 209.9 22.8 215 25-270 41-266 (457)
63 1h6u_A Internalin H; cell adhe 99.8 1.6E-20 5.5E-25 205.9 13.9 195 85-299 39-233 (308)
64 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 5.8E-24 217.0 22.4 256 25-329 39-303 (622)
65 1wwl_A Monocyte differentiatio 99.8 5.5E-22 1.9E-26 217.2 0.6 200 89-325 65-289 (312)
66 1jl5_A Outer protein YOPM; leu 99.8 3.2E-20 1.1E-24 214.9 13.8 259 25-324 10-291 (454)
67 4g8a_A TOLL-like receptor 4; l 99.8 1.5E-19 5.1E-24 212.6 18.4 85 236-324 469-556 (635)
68 2o6q_A Variable lymphocyte rec 99.8 4.8E-19 1.6E-23 189.7 19.9 200 87-326 16-221 (270)
69 2xwt_C Thyrotropin receptor; s 99.8 4.5E-20 1.5E-24 193.7 10.9 185 76-298 23-220 (239)
70 1jl5_A Outer protein YOPM; leu 99.8 6.9E-19 2.4E-23 203.7 20.3 221 65-324 133-371 (454)
71 2ca6_A RAN GTPase-activating p 99.8 6E-21 2.1E-25 214.3 2.8 46 80-125 53-108 (386)
72 2z62_A TOLL-like receptor 4, v 99.8 9.8E-20 3.4E-24 194.9 12.1 198 66-272 31-238 (276)
73 3bz5_A Internalin-J, INLJ; leu 99.8 1E-18 3.6E-23 202.3 21.0 220 68-323 47-267 (457)
74 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.6E-23 189.3 17.3 204 106-327 5-212 (290)
75 3g06_A SSPH2 (leucine-rich rep 99.8 7.7E-19 2.6E-23 211.3 16.4 232 24-298 59-299 (622)
76 4glp_A Monocyte differentiatio 99.8 1.7E-19 5.7E-24 197.1 9.7 202 85-324 89-308 (310)
77 1h6t_A Internalin B; cell adhe 99.8 8.6E-19 3E-23 190.8 14.6 198 84-325 43-240 (291)
78 1h6u_A Internalin H; cell adhe 99.8 1.4E-18 4.8E-23 190.4 15.0 207 93-324 25-231 (308)
79 3m19_A Variable lymphocyte rec 99.8 5.3E-18 1.8E-22 179.7 18.4 177 87-300 14-197 (251)
80 3rfs_A Internalin B, repeat mo 99.8 5.1E-18 1.7E-22 182.2 18.0 179 83-299 37-221 (272)
81 4glp_A Monocyte differentiatio 99.8 5.1E-19 1.7E-23 193.2 6.8 196 65-297 93-308 (310)
82 2ca6_A RAN GTPase-activating p 99.7 5E-19 1.7E-23 198.7 6.4 245 76-326 21-319 (386)
83 1z7x_W Ribonuclease inhibitor; 99.7 5.3E-19 1.8E-23 201.6 6.3 114 25-148 55-183 (461)
84 1z7x_W Ribonuclease inhibitor; 99.7 4.3E-19 1.5E-23 202.3 5.2 281 24-325 26-356 (461)
85 3goz_A Leucine-rich repeat-con 99.7 1.8E-18 6.2E-23 193.2 7.7 253 69-327 4-301 (362)
86 1m9s_A Internalin B; cell inva 99.7 1.1E-17 3.6E-22 200.8 14.3 176 83-300 39-214 (605)
87 2xwt_C Thyrotropin receptor; s 99.7 1.1E-17 3.9E-22 175.4 12.7 184 99-325 23-220 (239)
88 3m19_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 173.5 15.8 171 67-273 18-194 (251)
89 3cvr_A Invasion plasmid antige 99.7 3.4E-17 1.2E-21 195.1 15.1 179 87-324 59-244 (571)
90 4ay9_X Follicle-stimulating ho 99.7 1.8E-17 6.3E-22 184.3 11.8 224 75-318 20-254 (350)
91 3goz_A Leucine-rich repeat-con 99.7 5.7E-18 1.9E-22 189.1 7.5 249 31-298 3-299 (362)
92 3rfs_A Internalin B, repeat mo 99.7 1.7E-16 5.7E-21 170.3 17.8 197 88-326 20-221 (272)
93 1xeu_A Internalin C; cellular 99.7 6.3E-18 2.2E-22 181.5 6.6 171 86-299 18-188 (263)
94 1dce_A Protein (RAB geranylger 99.7 2.3E-19 7.7E-24 213.7 -6.3 198 108-317 346-567 (567)
95 1h6t_A Internalin B; cell adhe 99.7 8.7E-17 3E-21 174.9 13.7 187 91-324 28-214 (291)
96 2ast_B S-phase kinase-associat 99.7 1.6E-17 5.6E-22 181.7 6.6 238 66-323 50-306 (336)
97 2xot_A Amphoterin-induced prot 99.7 1.1E-16 3.6E-21 179.2 12.0 176 90-301 21-207 (361)
98 1m9s_A Internalin B; cell inva 99.7 3.2E-16 1.1E-20 188.1 14.4 166 68-274 48-213 (605)
99 3e6j_A Variable lymphocyte rec 99.7 7.6E-16 2.6E-20 161.6 14.9 155 168-323 40-201 (229)
100 1xeu_A Internalin C; cellular 99.7 4.7E-16 1.6E-20 166.9 13.4 170 133-324 17-186 (263)
101 4ay9_X Follicle-stimulating ho 99.6 1.8E-16 6.1E-21 176.4 8.4 235 29-293 12-256 (350)
102 3cvr_A Invasion plasmid antige 99.6 2E-15 6.9E-20 179.9 16.9 162 112-324 60-221 (571)
103 2v9t_B SLIT homolog 2 protein 99.6 1.6E-15 5.3E-20 158.5 13.2 133 168-301 32-170 (220)
104 4ezg_A Putative uncharacterize 99.6 1.6E-15 5.5E-20 155.0 12.4 124 169-296 67-194 (197)
105 2v9t_B SLIT homolog 2 protein 99.6 3.6E-15 1.2E-19 155.7 14.7 157 170-332 13-174 (220)
106 2ast_B S-phase kinase-associat 99.6 4.7E-16 1.6E-20 170.0 8.0 240 28-298 49-308 (336)
107 2v70_A SLIT-2, SLIT homolog 2 99.6 2.6E-15 9E-20 156.7 12.6 132 169-301 33-171 (220)
108 2o6s_A Variable lymphocyte rec 99.6 1.7E-15 5.8E-20 155.5 10.5 148 86-271 27-178 (208)
109 1dce_A Protein (RAB geranylger 99.6 1.7E-17 5.7E-22 197.6 -5.4 200 84-290 346-567 (567)
110 4ezg_A Putative uncharacterize 99.6 2.5E-15 8.7E-20 153.5 10.6 149 167-324 43-195 (197)
111 2xot_A Amphoterin-induced prot 99.6 5.4E-15 1.9E-19 165.3 13.9 157 169-329 40-208 (361)
112 2v70_A SLIT-2, SLIT homolog 2 99.6 7.5E-15 2.6E-19 153.3 13.8 156 170-331 13-174 (220)
113 3e6j_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 151.7 15.3 151 169-326 20-175 (229)
114 2o6s_A Variable lymphocyte rec 99.6 1.9E-14 6.6E-19 147.6 13.5 131 168-299 28-164 (208)
115 3ogk_B Coronatine-insensitive 99.5 6.2E-15 2.1E-19 173.3 6.9 157 167-325 341-528 (592)
116 1ds9_A Outer arm dynein; leuci 99.5 2.5E-16 8.5E-21 161.2 -5.2 162 169-332 24-194 (198)
117 2wfh_A SLIT homolog 2 protein 99.5 6.1E-14 2.1E-18 143.8 12.4 128 171-301 13-144 (193)
118 2ell_A Acidic leucine-rich nuc 99.5 3.8E-14 1.3E-18 140.5 9.8 133 167-299 23-163 (168)
119 3ogk_B Coronatine-insensitive 99.5 8.1E-15 2.8E-19 172.3 5.4 286 25-322 219-550 (592)
120 1w8a_A SLIT protein; signaling 99.5 8.8E-14 3E-18 142.0 12.1 129 170-301 10-144 (192)
121 4b8c_D Glucose-repressible alc 99.5 1.5E-14 5.3E-19 176.8 7.1 218 29-296 176-404 (727)
122 1a9n_A U2A', U2A'; complex (nu 99.5 7.1E-14 2.4E-18 140.2 8.6 136 167-323 18-153 (176)
123 2je0_A Acidic leucine-rich nuc 99.5 1.2E-13 4E-18 134.3 9.0 125 167-291 16-148 (149)
124 2ell_A Acidic leucine-rich nuc 99.4 1.2E-13 4E-18 137.0 8.6 134 84-252 21-163 (168)
125 2o6r_A Variable lymphocyte rec 99.4 7.2E-13 2.5E-17 132.6 13.9 129 169-300 8-141 (177)
126 2p1m_B Transport inhibitor res 99.4 2.7E-14 9.3E-19 167.7 3.5 158 167-327 337-523 (594)
127 1a9n_A U2A', U2A'; complex (nu 99.4 1.6E-13 5.5E-18 137.6 7.6 135 131-296 15-153 (176)
128 2wfh_A SLIT homolog 2 protein 99.4 3E-12 1E-16 131.2 14.4 153 194-351 13-168 (193)
129 2je0_A Acidic leucine-rich nuc 99.4 9E-13 3.1E-17 128.1 8.6 129 189-318 15-148 (149)
130 2p1m_B Transport inhibitor res 99.3 2.7E-13 9.2E-18 159.2 2.7 238 25-266 104-405 (594)
131 4b8c_D Glucose-repressible alc 99.3 1.5E-12 5.1E-17 159.3 9.3 132 166-298 222-356 (727)
132 1w8a_A SLIT protein; signaling 99.3 1.2E-11 4.1E-16 126.1 14.0 131 194-330 11-146 (192)
133 1ds9_A Outer arm dynein; leuci 99.3 9E-15 3.1E-19 149.5 -9.4 43 254-298 136-187 (198)
134 3sb4_A Hypothetical leucine ri 99.3 2.1E-12 7.2E-17 142.2 5.6 200 86-289 100-327 (329)
135 2o6r_A Variable lymphocyte rec 99.2 3.1E-11 1.1E-15 120.7 11.7 109 87-228 28-139 (177)
136 3sb4_A Hypothetical leucine ri 99.2 7.7E-12 2.6E-16 137.7 7.3 234 25-265 48-328 (329)
137 3g39_A Variable lymphocyte rec 99.2 8.4E-11 2.9E-15 117.9 12.0 105 170-300 11-119 (170)
138 2r9u_A Variable lymphocyte rec 99.2 1.3E-10 4.5E-15 117.1 11.9 104 171-300 15-122 (174)
139 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 113.5 11.0 103 138-273 12-117 (170)
140 2r9u_A Variable lymphocyte rec 99.1 4.6E-10 1.6E-14 113.1 12.0 103 139-274 16-121 (174)
141 3un9_A NLR family member X1; l 99.1 5E-11 1.7E-15 134.8 3.7 154 168-324 101-284 (372)
142 2ifg_A High affinity nerve gro 99.0 4.2E-10 1.4E-14 124.1 10.0 106 172-301 12-121 (347)
143 4fdw_A Leucine rich hypothetic 99.0 1.1E-09 3.8E-14 124.9 12.7 232 66-322 138-382 (401)
144 4fdw_A Leucine rich hypothetic 99.0 2.2E-09 7.4E-14 122.6 13.6 217 82-323 131-358 (401)
145 2ifg_A High affinity nerve gro 99.0 4.4E-10 1.5E-14 123.9 7.6 85 164-248 27-115 (347)
146 3un9_A NLR family member X1; l 98.9 1.3E-10 4.4E-15 131.4 1.6 178 86-296 71-283 (372)
147 2ra8_A Uncharacterized protein 98.3 3.8E-07 1.3E-11 102.8 6.5 156 78-269 163-341 (362)
148 3rw6_A Nuclear RNA export fact 98.3 1.6E-07 5.6E-12 101.7 1.9 103 218-323 148-262 (267)
149 2ra8_A Uncharacterized protein 98.3 3E-07 1E-11 103.7 3.9 40 257-296 278-320 (362)
150 1io0_A Tropomodulin; LRR prote 98.2 5.1E-07 1.7E-11 91.8 4.3 123 76-227 25-165 (185)
151 4fs7_A Uncharacterized protein 98.1 1.3E-05 4.4E-10 90.2 13.4 193 82-293 157-353 (394)
152 1io0_A Tropomodulin; LRR prote 98.1 2.2E-06 7.7E-11 87.0 5.0 59 168-226 65-136 (185)
153 4gt6_A Cell surface protein; l 97.9 0.00012 4.2E-09 82.2 16.7 107 208-322 260-369 (394)
154 4fs7_A Uncharacterized protein 97.9 5.5E-05 1.9E-09 85.1 12.8 145 167-320 207-353 (394)
155 4gt6_A Cell surface protein; l 97.8 0.00025 8.7E-09 79.7 16.0 125 186-321 260-389 (394)
156 3rw6_A Nuclear RNA export fact 97.6 2.5E-05 8.5E-10 84.7 3.8 91 173-264 148-257 (267)
157 4h09_A Hypothetical leucine ri 97.4 0.001 3.6E-08 73.9 13.2 102 186-291 235-341 (379)
158 4h09_A Hypothetical leucine ri 97.3 0.0022 7.6E-08 71.2 14.9 127 186-320 212-343 (379)
159 1pgv_A TMD-1, tropomodulin TMD 96.9 0.00079 2.7E-08 69.8 5.4 120 78-226 32-170 (197)
160 3rfe_A Platelet glycoprotein I 96.8 0.0017 5.8E-08 62.5 6.7 61 240-302 12-74 (130)
161 3e4g_A ATP synthase subunit S, 96.6 0.0013 4.6E-08 66.9 4.4 39 87-125 61-100 (176)
162 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0026 8.9E-08 65.9 5.2 55 169-223 71-136 (197)
163 3e4g_A ATP synthase subunit S, 96.1 0.0071 2.4E-07 61.5 6.5 81 213-294 61-150 (176)
164 3rfe_A Platelet glycoprotein I 95.6 0.013 4.5E-07 56.2 5.8 54 171-226 11-68 (130)
165 4fxw_B Splicing factor 1; UHM, 30.4 29 0.00099 33.1 3.0 22 603-624 94-115 (124)
No 1
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=4.4e-25 Score=247.97 Aligned_cols=294 Identities=14% Similarity=0.127 Sum_probs=228.7
Q ss_pred hcCCcEEEecCCCccchHhh-hhcccccccccCCC-C---------ccccccccccCCCCCCchhhHHHhcCCCCCcEEE
Q 002014 25 IEGSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-P---------LDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~-L~~L~~Le~L~~~~-~---------~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~ 93 (982)
+.+.+.|++..+.+..+|.. +..+++|+.|.... . .....+..+++++|...+..|..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 67788999999999999876 46777777765421 1 1122345677777775555566788888899999
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhc-------ccCCCC
Q 002014 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE-------IKDSPQ 166 (982)
Q Consensus 94 Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~-------L~~l~~ 166 (982)
|++|.+....+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.+..++......+.. +..+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~ 203 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 203 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCC
Confidence 9888888666666788888999999988888877777888888888888888776554222221111 111123
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccC
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (982)
.++|+.|++++|.+..+|.. .+++|+.|++++|.++.++.+..+++|+.|+|++|.++.+.+ .+..+++|+.|+|++
T Consensus 204 ~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 281 (390)
T 3o6n_A 204 PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 281 (390)
T ss_dssp CSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS
T ss_pred CCcceEEECCCCeeeecccc--ccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC
Confidence 45788888888888877653 357899999999999998889999999999999999998744 566789999999999
Q ss_pred CcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 246 N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
|+|+.++ .+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|+++..+ +..++.++.++|.+|++.+
T Consensus 282 n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 282 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CcCcccCcccCCCCCCCEEECCCCcceecC--ccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccc
Confidence 9999986 5678999999999999999987 45778999999999999998653 4567889999999999998
Q ss_pred HHHH
Q 002014 325 RELW 328 (982)
Q Consensus 325 ~e~~ 328 (982)
....
T Consensus 354 ~~~~ 357 (390)
T 3o6n_A 354 NSLR 357 (390)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7543
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=8.7e-25 Score=249.26 Aligned_cols=300 Identities=20% Similarity=0.215 Sum_probs=230.9
Q ss_pred hhcCCcEEEecCCCccch-HhhhhcccccccccCCCC-----------ccccccccccCCCCCCchhhHHHhcCCCCCcE
Q 002014 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-----------LDYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~~~-----------~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~ 91 (982)
+..+++.|+++.+.+..+ |..+..+++|+.|..... ...-.+..+++++|...+..|..+.++++|++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 346788999999999987 667888888888765321 11223457888888776666888889999999
Q ss_pred EEccCCCCCCCCCcC--CCCCCCccEEEeeCCCCCccchhh-HHhhhhhhHhhhccCCCccchhhcccch----------
Q 002014 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAAKG-LLELRHTLEKIICHNSTNALRHVFASRI---------- 158 (982)
Q Consensus 92 L~Ls~N~L~~~iP~s--f~~L~nL~~LdLS~N~Lss~~p~~-L~~L~~LLeLLL~~N~L~~L~~l~~~~l---------- 158 (982)
|+|++|.+.+..|.. |..+++|++|+|++|.+++..|.. +..+++|..+.+.+|.+..+.......+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l 187 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence 999999988755444 888899999999999998876765 7888888888888887665433221111
Q ss_pred -----hccc----------CCCCCCCccEEEccCCccc-cchhhcC----------------------------------
Q 002014 159 -----VEIK----------DSPQWNRLSFVSCSCNRLV-IMDESLQ---------------------------------- 188 (982)
Q Consensus 159 -----~~L~----------~l~~L~~Lq~LdLS~N~Lt-~LP~sL~---------------------------------- 188 (982)
..+. .+..+++|++|++++|.++ .+|..+.
T Consensus 188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 267 (455)
T 3v47_A 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267 (455)
T ss_dssp TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence 0110 1123468999999999887 3333221
Q ss_pred -----CCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCc--ccCCCCC
Q 002014 189 -----LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLK 258 (982)
Q Consensus 189 -----~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~ 258 (982)
..++|+.|++++|.++.+. .+..+++|+.|+|++|.++.+++ .+..+++|+.|+|++|.|+.+ ..+..++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 1257899999999988752 68899999999999999998765 566789999999999999887 3688999
Q ss_pred CCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHH
Q 002014 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (982)
Q Consensus 259 sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~ 327 (982)
+|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+++..+ ...+..++.|+.++|.+|++++...
T Consensus 348 ~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccCh-hhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999998854 67889999999999999998654 3456778899999999999998753
No 3
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-24 Score=257.96 Aligned_cols=294 Identities=14% Similarity=0.123 Sum_probs=232.9
Q ss_pred hcCCcEEEecCCCccchHhhh-hcccccccccCCC-C---------ccccccccccCCCCCCchhhHHHhcCCCCCcEEE
Q 002014 25 IEGSIVLKLNPAGLHYVQSRL-EALRELERLLAGA-P---------LDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L-~~L~~Le~L~~~~-~---------~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~ 93 (982)
+.+++.|++..+.+..+|..+ ..+++|+.|.... . .....+..++|++|...+..|..|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 567789999999999888764 6677777665421 1 1122345678888876665566788999999999
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcc-------cCCCC
Q 002014 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI-------KDSPQ 166 (982)
Q Consensus 94 Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L-------~~l~~ 166 (982)
|++|.++...+..|.++++|++|+|++|.|++..|..|..+++|..+.+.+|.+..++......+..+ ..+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 99999987777778899999999999999998888888889988888888888776543222222111 11223
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccC
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (982)
.++|+.|++++|.+..+|..+ .++|+.|+|++|.++.++.+..+++|+.|+|++|.+.++++ .+..+++|+.|+|++
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 287 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTT
T ss_pred CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCC
Confidence 457888888888888776543 46899999999999998889999999999999999998754 566789999999999
Q ss_pred CcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 246 NALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 246 N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
|.|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|++...+ +..++.|+.++|.+|++.+
T Consensus 288 N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~--~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 288 NRLVALNLYGQPIPTLKVLDLSHNHLLHVE--RNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp SCCCEEECSSSCCTTCCEEECCSSCCCCCG--GGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCcccccCCCCcEEECCCCCCCccC--cccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCCCC
Confidence 9999986 5667999999999999999987 45788999999999999998654 4567889999999999998
Q ss_pred HHHH
Q 002014 325 RELW 328 (982)
Q Consensus 325 ~e~~ 328 (982)
....
T Consensus 360 ~~~~ 363 (597)
T 3oja_B 360 NSLR 363 (597)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7643
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=2.2e-24 Score=248.43 Aligned_cols=280 Identities=15% Similarity=0.138 Sum_probs=185.3
Q ss_pred chhcCCcEEEecCCCccchH-hhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCC
Q 002014 23 PLIEGSIVLKLNPAGLHYVQ-SRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (982)
Q Consensus 23 ~lL~sl~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~ 101 (982)
.+....+.|+|+.+.+..++ ..+..+++|+.| +|++|...+..|..|.++++|++|+|++|.+..
T Consensus 29 ~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L--------------~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEEL--------------ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEE--------------ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS
T ss_pred CCCCCCcEEECCCCccceECHhHccCCCCCCEE--------------ECCCCccCEeChhhhhCCccCCEEECCCCcCCc
Confidence 34556778888888888774 455666665554 444554333335556666666666666666665
Q ss_pred CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc
Q 002014 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV 181 (982)
Q Consensus 102 ~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt 181 (982)
..+..|.++++|++|+|++|.+++..|..|..+++|..+.+.+|.+..+.... +..+++|+.|+|++|.++
T Consensus 95 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~l~~n~l~ 165 (477)
T 2id5_A 95 IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA---------FSGLNSLEQLTLEKCNLT 165 (477)
T ss_dssp CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS---------STTCTTCCEEEEESCCCS
T ss_pred cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh---------ccCCCCCCEEECCCCcCc
Confidence 55555666666666666666666655666666666666666666554433211 112344555555555555
Q ss_pred cchh-hcCCCCCCCEEEcCCCCCCCCC--------------------------CcCCCCCCCEEEcCCCCCCCccc-ccc
Q 002014 182 IMDE-SLQLLPAVETLDLSRNKFAKVD--------------------------NLRKCVNLKHLDLGFNNLRSIAA-FSE 233 (982)
Q Consensus 182 ~LP~-sL~~L~~L~~LdLS~N~Lt~l~--------------------------~L~~L~sL~~LdLS~N~Ls~L~~-l~~ 233 (982)
.+|. .+..+++|+.|+|++|.+..++ .+....+|+.|+|++|.|+.++. .+.
T Consensus 166 ~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 245 (477)
T 2id5_A 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245 (477)
T ss_dssp SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT
T ss_pred ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc
Confidence 4433 3444555555555554444322 22233467777777777877774 455
Q ss_pred ccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCC
Q 002014 234 VSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (982)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~ 311 (982)
.+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.|+..+ ...|..++.
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~ 321 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEP-YAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGN 321 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECT-TTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGG
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECH-HHhcCcccCCEEECCCCcCceeC---HhHcCCCcc
Confidence 6789999999999998874 58889999999999999998764 67889999999999999998654 345667788
Q ss_pred CceeecCCCccChHHHHH
Q 002014 312 PAKLKVDGKEISTRELWE 329 (982)
Q Consensus 312 L~lL~LdgN~Is~~e~~~ 329 (982)
|+.++|++|++.+.....
T Consensus 322 L~~L~l~~N~l~c~c~~~ 339 (477)
T 2id5_A 322 LETLILDSNPLACDCRLL 339 (477)
T ss_dssp CCEEECCSSCEECSGGGH
T ss_pred cCEEEccCCCccCccchH
Confidence 999999999999876543
No 5
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=3.5e-23 Score=228.05 Aligned_cols=275 Identities=17% Similarity=0.238 Sum_probs=155.7
Q ss_pred hhcCCcEEEecCCCccchHhhhhcccccccccCCC-Cc-------cccccccccCCCCCCchhhHHHhcCCCCCcEEEcc
Q 002014 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PL-------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSAL 95 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~-~~-------~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls 95 (982)
-+.+++.|++..+.+..++. +..+++|+.|.... .. ..-.+..+++++|.. ..++ .+..+++|++|+|+
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i-~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI-TDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECT
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc-cCch-HHcCCCcCCEEECc
Confidence 46677888888888888875 77777777766521 11 112345677777753 3455 58889999999999
Q ss_pred CCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEc
Q 002014 96 PPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSC 175 (982)
Q Consensus 96 ~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdL 175 (982)
+|.+.+..+ +..+++|++|++++|.....++ .+..+++|..+.+.+|.+..+... ..+++|+.|++
T Consensus 119 ~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-----------~~l~~L~~L~l 184 (347)
T 4fmz_A 119 EDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPI-----------ANLTDLYSLSL 184 (347)
T ss_dssp TSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGG-----------GGCTTCSEEEC
T ss_pred CCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhh-----------ccCCCCCEEEc
Confidence 999886544 7788888888888886555343 477777777777777766554431 12345555555
Q ss_pred cCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCC
Q 002014 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255 (982)
Q Consensus 176 S~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~ 255 (982)
++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|+|++|.++.+++ ...+++|+.|+|++|.++.++.+.
T Consensus 185 ~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 262 (347)
T 4fmz_A 185 NYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVK 262 (347)
T ss_dssp TTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGT
T ss_pred cCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChhHh
Confidence 5555554433 44444555555555555444444444455555555555444443 233344455555555444444444
Q ss_pred CCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
.+++|+.|+|++|.|+.++ .+..+++|+.|++++|++... ....+..++.++.++|.+|+++
T Consensus 263 ~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~---~~~~l~~l~~L~~L~L~~n~l~ 324 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNE---DMEVIGGLTNLTTLFLSQNHIT 324 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGG---GHHHHHTCTTCSEEECCSSSCC
T ss_pred cCCCcCEEEccCCccCCCh---hhcCCCCCCEEECcCCcCCCc---ChhHhhccccCCEEEccCCccc
Confidence 4444555555444444432 234444444444444444322 1123334444444444444444
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=5.5e-24 Score=245.02 Aligned_cols=288 Identities=19% Similarity=0.224 Sum_probs=224.2
Q ss_pred chhcCCcEEEecCCCccch-HhhhhcccccccccCCCC----------ccccccccccCCCCCCchhhHHHhcCCCCCcE
Q 002014 23 PLIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP----------LDYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (982)
Q Consensus 23 ~lL~sl~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~~~----------~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~ 91 (982)
.-+.+++.|+|+.+.+..+ |..+..+++|+.|..... ...-.+..++|++|......+..+..+++|+.
T Consensus 53 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 3467789999999999887 667788888877765211 11223456777777766656667788888888
Q ss_pred EEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCcc
Q 002014 92 VSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLS 171 (982)
Q Consensus 92 L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq 171 (982)
|+|++|.+.+..|..|..+++|+.|+|++|.+++..+..+..+++|..+.+.+|.+..+.... +..+++|+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~---------~~~l~~L~ 203 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS---------FKRLYRLK 203 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC---------SCSCTTCC
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh---------cccCcccc
Confidence 888888888777778888888888888888888766677778888777777777766554322 23567899
Q ss_pred EEEccCCccc-cchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCc
Q 002014 172 FVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNA 247 (982)
Q Consensus 172 ~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~ 247 (982)
.|++++|.+. .+|..+....+|+.|+|++|.++.++ .+..+++|+.|+|++|.|+.++. .+..+++|+.|+|++|+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 283 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ 283 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC
T ss_pred eeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc
Confidence 9999997655 77776667779999999999999987 68899999999999999998876 45668999999999999
Q ss_pred CCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 248 LTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 248 Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.|... .. +.....+.+.++.+.|
T Consensus 284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~c~c~~~-~~---~~~~~~~~~~~~~~~C 357 (477)
T 2id5_A 284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEE-SVFHSVGNLETLILDSNPLACDCRLL-WV---FRRRWRLNFNRQQPTC 357 (477)
T ss_dssp CSEECTTTBTTCTTCCEEECCSSCCSCCCG-GGBSCGGGCCEEECCSSCEECSGGGH-HH---HTTTTSSCCTTCCCBE
T ss_pred cceECHHHhcCcccCCEEECCCCcCceeCH-hHcCCCcccCEEEccCCCccCccchH-hH---HhhhhccccCccCcee
Confidence 9997 378999999999999999999875 66789999999999999999998543 11 2223344555665554
No 7
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=4.8e-24 Score=244.99 Aligned_cols=227 Identities=15% Similarity=0.168 Sum_probs=129.7
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCC
Q 002014 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (982)
++|++|+|++|.|.+..|..|.++++|++|+|++|.|++..+..|.++++|..+.+.+|.+..++...+ ..
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---------~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAF---------EY 145 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTS---------SS
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhh---------cc
Confidence 456666666666665555566666666666666666665555556666666666666665544433211 13
Q ss_pred CCCccEEEccCCccccchh-hcCCCCCCCEEEcCC-CCCCCCC--CcCCCCCCCEEEcCCCCCCCccccccccccceeec
Q 002014 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~ 242 (982)
+++|++|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.++.++. +..+++|+.|+
T Consensus 146 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~ 224 (452)
T 3zyi_A 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELE 224 (452)
T ss_dssp CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEE
T ss_pred cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEE
Confidence 4566666666666665544 455666666666665 3444443 45566666666666666666543 22345666666
Q ss_pred ccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCC
Q 002014 243 LRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (982)
Q Consensus 243 Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN 320 (982)
|++|.|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..++.|+.++|++|
T Consensus 225 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp CTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTSSTTCTTCCEEECCSS
T ss_pred CcCCcCcccCcccccCccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccC---hHHhccccCCCEEEccCC
Confidence 666666654 245666666666666666665543 44556666666666666665332 233444555666666666
Q ss_pred ccChHHH
Q 002014 321 EISTREL 327 (982)
Q Consensus 321 ~Is~~e~ 327 (982)
++.|+..
T Consensus 301 p~~CdC~ 307 (452)
T 3zyi_A 301 PWNCDCD 307 (452)
T ss_dssp CEECSTT
T ss_pred CcCCCCC
Confidence 6655543
No 8
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=4.3e-24 Score=244.53 Aligned_cols=238 Identities=16% Similarity=0.181 Sum_probs=144.0
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcc
Q 002014 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA 155 (982)
Q Consensus 76 L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~ 155 (982)
+..+|..+ .++|+.|+|++|.+....+..|.++++|++|+|++|.|+.+.+..|.++++|..+.+.+|.+..++...+
T Consensus 55 l~~iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 132 (440)
T 3zyj_A 55 LREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAF 132 (440)
T ss_dssp CSSCCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTS
T ss_pred cCcCCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHh
Confidence 44455433 2556666666666666666666666666666666666666555666666666666666665554443211
Q ss_pred cchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCC-CCCCCCC--CcCCCCCCCEEEcCCCCCCCcccc
Q 002014 156 SRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF 231 (982)
Q Consensus 156 ~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l 231 (982)
..+++|++|+|++|.|+.+|. .|..+++|+.|+|++ |.+..++ .|..+++|+.|+|++|.++.++.+
T Consensus 133 ---------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 203 (440)
T 3zyj_A 133 ---------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNL 203 (440)
T ss_dssp ---------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCC
T ss_pred ---------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccccc
Confidence 234566666666666665554 566666666666666 3444443 466666666666666666666542
Q ss_pred ccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhc
Q 002014 232 SEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYF 309 (982)
Q Consensus 232 ~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l 309 (982)
..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..+
T Consensus 204 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l 278 (440)
T 3zyj_A 204 -TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLP---HDLFTPL 278 (440)
T ss_dssp -TTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCC---TTTTSSC
T ss_pred -CCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccC---hhHhccc
Confidence 3446666666666666665 256666666667776666666543 45566666666777666666443 2334555
Q ss_pred CCCceeecCCCccChHHHHH
Q 002014 310 AHPAKLKVDGKEISTRELWE 329 (982)
Q Consensus 310 ~~L~lL~LdgN~Is~~e~~~ 329 (982)
+.|+.++|++|++.|+....
T Consensus 279 ~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp TTCCEEECCSSCEECSSTTH
T ss_pred cCCCEEEcCCCCccCCCCch
Confidence 66666666666666655433
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=2.1e-23 Score=246.77 Aligned_cols=291 Identities=18% Similarity=0.132 Sum_probs=222.0
Q ss_pred CCcEEEecCCCccchHhh-hhcccccccccCCC-Cc--------cccccccccCCCCCCchhhHHHhcCCCCCcEEEccC
Q 002014 27 GSIVLKLNPAGLHYVQSR-LEALRELERLLAGA-PL--------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (982)
Q Consensus 27 sl~~L~L~~~~L~~Lp~~-L~~L~~Le~L~~~~-~~--------~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~ 96 (982)
+++.|++..+.+..++.. +..+++|+.|.... .. ..-.+..+++++|...+..|..+..+++|++|+|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 345555666655555443 44444444443311 00 011234566777776666677888999999999999
Q ss_pred CCCCCCCC-cCCCCCCCccEEEeeCCCCCccc--hhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEE
Q 002014 97 PPARDPTP-LSLLPFCRLKVLELRGCDLSTSA--AKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFV 173 (982)
Q Consensus 97 N~L~~~iP-~sf~~L~nL~~LdLS~N~Lss~~--p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~L 173 (982)
|.+.+.+| ..+..+++|++|+|++|.+++.. +..+..+++|..+.+.+|.+..+.... +..+++|++|
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L 405 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA---------FKECPQLELL 405 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT---------TTTCTTCSEE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH---------hcCCccCCeE
Confidence 98886555 45888999999999999998865 778888888888888888765543321 2356799999
Q ss_pred EccCCccccc-hh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCc--c--ccccccccceeecccC
Q 002014 174 SCSCNRLVIM-DE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI--A--AFSEVSCHIVKLVLRN 245 (982)
Q Consensus 174 dLS~N~Lt~L-P~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L--~--~l~~~L~sL~~L~Ls~ 245 (982)
++++|.++.. |. .+..+++|+.|++++|.++..+ .+..+++|+.|+|++|.+.+. + ..+..+++|+.|+|++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCC
Confidence 9999999844 33 4889999999999999998753 688999999999999999863 2 2456689999999999
Q ss_pred CcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 246 NALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 246 N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
|+++.+ ..+..+++|+.|+|++|+|+..++ ..+..++.| .|+|++|+++..+ ...+..++.++.++|.+|++.
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~L-~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI-EALSHLKGI-YLNLASNHISIIL---PSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGG-GGGTTCCSC-EEECCSSCCCCCC---GGGHHHHHTSSEEECTTCCEE
T ss_pred CccCccChhhhccccCCCEEECCCCccCcCCh-hHhCccccc-EEECcCCcccccC---HhhcccCCCCCEEeCCCCCcc
Confidence 999987 378999999999999999998765 778999999 9999999998654 345677889999999999999
Q ss_pred hHHHHHHH
Q 002014 324 TRELWERQ 331 (982)
Q Consensus 324 ~~e~~~~~ 331 (982)
|.......
T Consensus 561 c~c~~~~~ 568 (606)
T 3t6q_A 561 CTCSNIYF 568 (606)
T ss_dssp CSGGGHHH
T ss_pred ccCCcHHH
Confidence 87654433
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=1.4e-22 Score=223.19 Aligned_cols=274 Identities=16% Similarity=0.211 Sum_probs=175.0
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCC-Cc-------cccccccccCCCCCCchhhHHHhcCCCCCcEEEccC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-PL-------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALP 96 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~-~~-------~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~ 96 (982)
+.+++.|+++.+.+..++. +..+++|+.|.... .. ..-.+..+++++|... .++. +..+++|+.|++++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNIS-DISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCC-CCGG-GTTCTTCCEEECTT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCccc-Cchh-hccCCceeEEECCC
Confidence 5566777777777777666 66666666655421 11 1122345566665433 3343 66777777777777
Q ss_pred CCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEcc
Q 002014 97 PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCS 176 (982)
Q Consensus 97 N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS 176 (982)
|.....++. +..+++|++|++++|.+....+ +..++++..+.+.+|.+..++. +..+++|+.|+++
T Consensus 142 n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 142 NHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-----------LASLTSLHYFTAY 207 (347)
T ss_dssp CTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-----------GGGCTTCCEEECC
T ss_pred CCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-----------ccCCCccceeecc
Confidence 755544433 6677777777777777766333 6666666666677666554443 1235567777777
Q ss_pred CCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCC
Q 002014 177 CNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIEN 256 (982)
Q Consensus 177 ~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~ 256 (982)
+|.+..++. +..+++|++|++++|.++.++.+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++.++.+..
T Consensus 208 ~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 285 (347)
T 4fmz_A 208 VNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLNN 285 (347)
T ss_dssp SSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGG
T ss_pred cCCCCCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChh-HhcCCCcCEEEccCCccCCChhhcC
Confidence 777776644 66677777777777777776667777777777777777776643 3445677777777777777766777
Q ss_pred CCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 257 LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
+++|+.|+|++|.++..++ ..+..+++|+.|+|++|+++..+. +..++.++.+++.+|+++
T Consensus 286 l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CTTCSEEECCSSCCCGGGH-HHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC---
T ss_pred CCCCCEEECcCCcCCCcCh-hHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhhccc
Confidence 7777777777777776543 556677777777777777765432 445667777777777764
No 11
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=3e-23 Score=236.60 Aligned_cols=276 Identities=21% Similarity=0.234 Sum_probs=209.0
Q ss_pred hhcCCcEEEecCCCcc-ch-HhhhhcccccccccCCC-Cc---------cccccccccCCCCCCchhhHHH--hcCCCCC
Q 002014 24 LIEGSIVLKLNPAGLH-YV-QSRLEALRELERLLAGA-PL---------DYLRAYVSDLGDHRALEQLRRI--LKLLTSL 89 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~-~L-p~~L~~L~~Le~L~~~~-~~---------~~l~l~~LdLs~n~~L~~Lp~~--L~~L~~L 89 (982)
-+.+++.|+++.+.+. .+ +..+..+++|+.|.... .. ....+..+++++|...+.++.. +..+++|
T Consensus 52 ~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L 131 (455)
T 3v47_A 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL 131 (455)
T ss_dssp SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTC
T ss_pred cCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccC
Confidence 3566778888777764 34 44566666676665421 11 1123456788888777666665 8899999
Q ss_pred cEEEccCCCCCCCCCcC-CCCCCCccEEEeeCCCCCccchhhHHhh----------------------------------
Q 002014 90 KVVSALPPPARDPTPLS-LLPFCRLKVLELRGCDLSTSAAKGLLEL---------------------------------- 134 (982)
Q Consensus 90 k~L~Ls~N~L~~~iP~s-f~~L~nL~~LdLS~N~Lss~~p~~L~~L---------------------------------- 134 (982)
++|+|++|.+.+..|.. |..+++|++|+|++|.+++..|..+..+
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 211 (455)
T 3v47_A 132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211 (455)
T ss_dssp CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT
T ss_pred CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccc
Confidence 99999999999887776 7889999999999999988777766655
Q ss_pred hhhhHhhhccCCCccchh-hccc-----chhcc-----------------cC-----C--CCCCCccEEEccCCcccc-c
Q 002014 135 RHTLEKIICHNSTNALRH-VFAS-----RIVEI-----------------KD-----S--PQWNRLSFVSCSCNRLVI-M 183 (982)
Q Consensus 135 ~~LLeLLL~~N~L~~L~~-l~~~-----~l~~L-----------------~~-----l--~~L~~Lq~LdLS~N~Lt~-L 183 (982)
++|..+.+.+|.+..... .+.. .+..+ .. + ...++|+.|++++|.++. +
T Consensus 212 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 291 (455)
T 3v47_A 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL 291 (455)
T ss_dssp CEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred ceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence 345555555555432111 0000 00000 00 0 013589999999999995 4
Q ss_pred hhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCc-c-cCCCCC
Q 002014 184 DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL-R-GIENLK 258 (982)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L-~-~L~~L~ 258 (982)
|..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.+++ .+..+++|+.|+|++|+|+.+ + .+..++
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 371 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccc
Confidence 668999999999999999999864 78899999999999999998854 566789999999999999987 3 789999
Q ss_pred CCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 259 SLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 259 sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
+|+.|+|++|+|+.++. ..+..+++|+.|+|++|+++|.+.
T Consensus 372 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 372 NLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccEEECCCCccccCCH-hHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999875 567899999999999999999874
No 12
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=7.3e-23 Score=224.80 Aligned_cols=267 Identities=17% Similarity=0.172 Sum_probs=192.8
Q ss_pred CCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcC
Q 002014 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (982)
Q Consensus 27 sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~s 106 (982)
..+.++++.+++..+|..+. ++ +..+++++|...+..+..+.++++|++|+|++|.+.+..|..
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~--------------l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PD--------------TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TT--------------CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCCccccCccCC--CC--------------CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 45788888888888775432 12 234667777644434447888999999999999998888888
Q ss_pred CCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc---cc
Q 002014 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (982)
Q Consensus 107 f~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt---~L 183 (982)
|..+++|++|+|++|.|+. +|..+. ++|.++.+.+|.+..+....+. .+++|++|++++|.+. ..
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~---------~l~~L~~L~l~~n~l~~~~~~ 163 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFN---------GLNQMIVVELGTNPLKSSGIE 163 (330)
T ss_dssp TTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHT---------TCTTCCEEECCSSCCCGGGBC
T ss_pred hcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhc---------CCccccEEECCCCcCCccCcC
Confidence 9999999999999999876 444433 4666777888877665543222 4568888888888886 34
Q ss_pred hhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCC
Q 002014 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (982)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (982)
+..+..+++|++|++++|.++.++... .++|+.|+|++|.++.+++ .+..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 242 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred hhhccCCCCcCEEECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCC
Confidence 557788888888888888888776322 2788888888888887643 5556788888888888888763 57788888
Q ss_pred CEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchh---HhhhcCCCceeecCCCccCh
Q 002014 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQ---VFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~---v~~~l~~L~lL~LdgN~Is~ 324 (982)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+|+..+..... .......+..+.|.+|++..
T Consensus 243 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 243 RELHLNNNKLVKVP--GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp CEEECCSSCCSSCC--TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred CEEECCCCcCccCC--hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 88888888888876 4577888888888888888765321100 00123556778888888864
No 13
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=3e-23 Score=237.50 Aligned_cols=228 Identities=19% Similarity=0.229 Sum_probs=201.4
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhcc
Q 002014 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (982)
Q Consensus 65 l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~ 144 (982)
+..++|++|......+..|.++++|++|+|++|.+....+..|.++++|++|+|++|.|+...+..|..+++|..+.+.+
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 145 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN 145 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC
Confidence 34578888876655567899999999999999999998889999999999999999999987777899999999999999
Q ss_pred CCCccchhhcccchhcccCCCCCCCccEEEccC-Cccccchh-hcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCC
Q 002014 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGF 222 (982)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~ 222 (982)
|.+..++...+ ..+++|++|+|++ |.+..++. .|..+++|++|+|++|.++.++.+..+++|+.|+|++
T Consensus 146 N~i~~~~~~~~---------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 216 (440)
T 3zyj_A 146 NPIESIPSYAF---------NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSG 216 (440)
T ss_dssp CCCCEECTTTT---------TTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTT
T ss_pred CcccccCHHHh---------hhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCC
Confidence 98877665332 3577999999998 56777766 7899999999999999999999999999999999999
Q ss_pred CCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 223 NNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 223 N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
|.|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|+|
T Consensus 217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH-DLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT-TTTSSCTTCCEEECCSSCEECSS
T ss_pred CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh-hHhccccCCCEEEcCCCCccCCC
Confidence 99998854 6667899999999999999973 78999999999999999999875 66789999999999999999998
Q ss_pred ccc
Q 002014 300 WYR 302 (982)
Q Consensus 300 ~~r 302 (982)
.+.
T Consensus 296 ~l~ 298 (440)
T 3zyj_A 296 DIL 298 (440)
T ss_dssp TTH
T ss_pred Cch
Confidence 653
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.1e-23 Score=253.11 Aligned_cols=287 Identities=18% Similarity=0.207 Sum_probs=229.5
Q ss_pred CcEEEecCCCcc-chHhhhhcccccccccCCCCcc---------------------------------------------
Q 002014 28 SIVLKLNPAGLH-YVQSRLEALRELERLLAGAPLD--------------------------------------------- 61 (982)
Q Consensus 28 l~~L~L~~~~L~-~Lp~~L~~L~~Le~L~~~~~~~--------------------------------------------- 61 (982)
...|+|..+++. .+|..+.+|+.|+.|.......
T Consensus 83 V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence 457889999987 7899999999999988743311
Q ss_pred -----------------ccccccccCC--CCCCchhhHHHhcCCCCCcEEEccCCCCCCC-----------------CCc
Q 002014 62 -----------------YLRAYVSDLG--DHRALEQLRRILKLLTSLKVVSALPPPARDP-----------------TPL 105 (982)
Q Consensus 62 -----------------~l~l~~LdLs--~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~-----------------iP~ 105 (982)
...+..+.++ .|. +..+|..++++++|++|+|++|.+++. +|.
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~-l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~ 241 (636)
T 4eco_A 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-ITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE 241 (636)
T ss_dssp HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCE-EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhcCccccccccccccchhhhhhccccCC-CccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCch
Confidence 0001111111 233 444999999999999999999999985 899
Q ss_pred CCC--CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC-Ccc--chhhcccchhcccCCCCCCCccEEEccCCcc
Q 002014 106 SLL--PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNA--LRHVFASRIVEIKDSPQWNRLSFVSCSCNRL 180 (982)
Q Consensus 106 sf~--~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~-L~~--L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~L 180 (982)
.++ ++++|++|+|++|.+.+.+|..+.++++|..+.+.+|. +.. ++..+ ..+..+..+++|++|++++|++
T Consensus 242 ~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~----~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW----QALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHH----HHHHHSGGGGTCCEEECCSSCC
T ss_pred hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHH----HhhhccccCCCCCEEECCCCcC
Confidence 999 99999999999999999999999999999999999997 653 44332 2221222346899999999999
Q ss_pred ccchh--hcCCCCCCCEEEcCCCCCC-CCCCcCCCCCCCEEEcCCCCCCCcccccccccc-ceeecccCCcCCCcc-cCC
Q 002014 181 VIMDE--SLQLLPAVETLDLSRNKFA-KVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIE 255 (982)
Q Consensus 181 t~LP~--sL~~L~~L~~LdLS~N~Lt-~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~s-L~~L~Ls~N~Ls~L~-~L~ 255 (982)
+.+|. .+..+++|+.|+|++|.++ .++.+..+++|+.|+|++|.++.++..+..+++ |+.|+|++|.|+.+| .+.
T Consensus 318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~ 397 (636)
T 4eco_A 318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397 (636)
T ss_dssp SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence 99998 8999999999999999999 678888889999999999999988877777788 999999999999886 444
Q ss_pred CC--CCCCEEECcCCCCCCCchhhhhc-------CCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 256 NL--KSLEGLDISYNIISTFSELEFLA-------SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 256 ~L--~sL~~LdLS~N~Ls~l~~l~~L~-------~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
.+ ++|+.|+|++|.|++..+ ..+. .+++|+.|+|++|.++..+ ...+..++.++.++|.+|.++
T Consensus 398 ~~~l~~L~~L~Ls~N~l~~~~p-~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp---~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 398 AKSVSVMSAIDFSYNEIGSVDG-KNFDPLDPTPFKGINVSSINLSNNQISKFP---KELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp TTCSSCEEEEECCSSCTTTTTT-CSSCTTCSSCCCCCCEEEEECCSSCCCSCC---THHHHTTCCCSEEECCSSCCS
T ss_pred hcccCccCEEECcCCcCCCcch-hhhcccccccccCCCCCEEECcCCccCcCC---HHHHccCCCCCEEECCCCCCC
Confidence 43 489999999999987543 4455 6779999999999998443 455667888999999999886
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=6.9e-23 Score=238.18 Aligned_cols=178 Identities=17% Similarity=0.123 Sum_probs=139.7
Q ss_pred CCCCCccEEEccCCcccc-chhhcCCCCCCCEEEcCCCCCCCCC----CcCCCCCCCEEEcCCCCCCC-ccc-ccccccc
Q 002014 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAA-FSEVSCH 237 (982)
Q Consensus 165 ~~L~~Lq~LdLS~N~Lt~-LP~sL~~L~~L~~LdLS~N~Lt~l~----~L~~L~sL~~LdLS~N~Ls~-L~~-l~~~L~s 237 (982)
..+++|++|++++|+++. +|..+..+++|++|+|++|+++.++ .+..+++|+.|+|++|.+.. ++. .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 467889999999999985 7788899999999999999998753 47889999999999999988 765 3556789
Q ss_pred ceeecccCCcCCCc-c-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCcee
Q 002014 238 IVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKL 315 (982)
Q Consensus 238 L~~L~Ls~N~Ls~L-~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL 315 (982)
|+.|+|++|++++. + .+. ++|+.|+|++|+|+.+| ..+..+++|+.|+|++|+++..+. ..+..++.++.+
T Consensus 401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPD---GIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCC--GGGGGCTTCCEEECCSSCCCCCCT---TTTTTCTTCCEE
T ss_pred CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccc--hhhhcCCCCCEEECCCCcCCccCH---HHhccCCcccEE
Confidence 99999999999763 2 332 79999999999999988 456699999999999999996553 246778899999
Q ss_pred ecCCCccChHHHHHHH-HHHHhh--cCCCCCccccCC
Q 002014 316 KVDGKEISTRELWERQ-LIIARR--QKRPAGFGFYSP 349 (982)
Q Consensus 316 ~LdgN~Is~~e~~~~~-~l~~~~--~~~~~~~~~~~P 349 (982)
+|.+|++.|.....+. ..+... ........|..|
T Consensus 474 ~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p 510 (520)
T 2z7x_B 474 WLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 510 (520)
T ss_dssp ECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTT
T ss_pred ECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCc
Confidence 9999999987755443 223322 222334555555
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=1.8e-23 Score=256.34 Aligned_cols=285 Identities=21% Similarity=0.166 Sum_probs=212.0
Q ss_pred cCCcEEEecCCCcc-chHhhhhccc-ccccccCCCCc-------c-----ccccccccCCCCCCchhhHHHhcCCCCCcE
Q 002014 26 EGSIVLKLNPAGLH-YVQSRLEALR-ELERLLAGAPL-------D-----YLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (982)
Q Consensus 26 ~sl~~L~L~~~~L~-~Lp~~L~~L~-~Le~L~~~~~~-------~-----~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~ 91 (982)
.+++.|+++.+.+. .+|..+..+. +|+.+...... . .-.+..+++++|...+.+|..+..+++|++
T Consensus 343 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 422 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422 (768)
T ss_dssp TTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCE
T ss_pred CCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCE
Confidence 44555555555554 4555554443 44444332100 0 113455667777666677778888888888
Q ss_pred EEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccc-hhhcccchhcccCCCCCCCc
Q 002014 92 VSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNAL-RHVFASRIVEIKDSPQWNRL 170 (982)
Q Consensus 92 L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L-~~l~~~~l~~L~~l~~L~~L 170 (982)
|+|++|.+.+.+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+|.+... +..+ ..+++|
T Consensus 423 L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l----------~~l~~L 492 (768)
T 3rgz_A 423 LHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL----------SNCTNL 492 (768)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG----------GGCTTC
T ss_pred EECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH----------hcCCCC
Confidence 88888888888888888888888888888888888888888888888888888876532 2221 246789
Q ss_pred cEEEccCCccc-cchhhcCCCCCCCEEEcCCCCCCC-CC-CcCCCCCCCEEEcCCCCCCC-cccc---------------
Q 002014 171 SFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLGFNNLRS-IAAF--------------- 231 (982)
Q Consensus 171 q~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~L~sL~~LdLS~N~Ls~-L~~l--------------- 231 (982)
++|++++|+++ .+|..+..+++|++|+|++|.+++ +| .+..+++|+.|+|++|.+.+ +|..
T Consensus 493 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~ 572 (768)
T 3rgz_A 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAG 572 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCS
T ss_pred CEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccc
Confidence 99999999998 888899999999999999999985 44 78889999999999998763 3321
Q ss_pred -------------------------------------------------------ccccccceeecccCCcCCC-cc-cC
Q 002014 232 -------------------------------------------------------SEVSCHIVKLVLRNNALTT-LR-GI 254 (982)
Q Consensus 232 -------------------------------------------------------~~~L~sL~~L~Ls~N~Ls~-L~-~L 254 (982)
+..++.|+.|+|++|++++ +| .+
T Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l 652 (768)
T 3rgz_A 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652 (768)
T ss_dssp CEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG
T ss_pred ccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHH
Confidence 1124678899999999986 44 78
Q ss_pred CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
..+++|+.|+|++|.|++..+ ..++.+++|+.|+|++|.++... +..+..++.|+.++|++|+++.
T Consensus 653 ~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~l~g~i---p~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 653 GSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNKLDGRI---PQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSCCEECC---CGGGGGCCCCSEEECCSSEEEE
T ss_pred hccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCcccCcC---ChHHhCCCCCCEEECcCCcccc
Confidence 899999999999999985443 67889999999999999998542 2557788899999999998874
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=4e-23 Score=237.31 Aligned_cols=228 Identities=19% Similarity=0.199 Sum_probs=202.5
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhcc
Q 002014 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (982)
Q Consensus 65 l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~ 144 (982)
+..++|++|......|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|.|+...+..|..+++|..+.+.+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 156 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN 156 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC
Confidence 45678888876666678899999999999999999999999999999999999999999998788899999999999999
Q ss_pred CCCccchhhcccchhcccCCCCCCCccEEEccC-Cccccchh-hcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCC
Q 002014 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGF 222 (982)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~ 222 (982)
|.+..++...+ ..+++|+.|++++ |.+..++. .|..+++|++|+|++|.++.++.+..+++|+.|+|++
T Consensus 157 N~l~~~~~~~~---------~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~ 227 (452)
T 3zyi_A 157 NPIESIPSYAF---------NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227 (452)
T ss_dssp CCCCEECTTTT---------TTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred CCcceeCHhHH---------hcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence 98877665332 3577999999998 67777776 6889999999999999999999999999999999999
Q ss_pred CCCCCccc-cccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 223 NNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 223 N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
|.|+.+++ .+..+++|+.|+|++|+|+.+ ..+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++||+.|+|
T Consensus 228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~Np~~CdC 306 (452)
T 3zyi_A 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH-DLFTPLRYLVELHLHHNPWNCDC 306 (452)
T ss_dssp SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT-TSSTTCTTCCEEECCSSCEECST
T ss_pred CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh-HHhccccCCCEEEccCCCcCCCC
Confidence 99998854 566789999999999999997 378999999999999999999875 66788999999999999999998
Q ss_pred ccc
Q 002014 300 WYR 302 (982)
Q Consensus 300 ~~r 302 (982)
.+.
T Consensus 307 ~~~ 309 (452)
T 3zyi_A 307 DIL 309 (452)
T ss_dssp TTH
T ss_pred Cch
Confidence 653
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.2e-22 Score=237.27 Aligned_cols=155 Identities=21% Similarity=0.230 Sum_probs=102.3
Q ss_pred CCCccEEEccCCcccc-chh---hcCCCCCCCEEEcCCCCCCCCC----CcCCCCCCCEEEcCCCCCCCccccccccccc
Q 002014 167 WNRLSFVSCSCNRLVI-MDE---SLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHI 238 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~-LP~---sL~~L~~L~~LdLS~N~Lt~l~----~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL 238 (982)
+++|++|++++|+++. +|. .+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.+|.....+++|
T Consensus 333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L 412 (549)
T 2z81_A 333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKM 412 (549)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTC
T ss_pred CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccc
Confidence 4556666666666652 221 2455566666666666666543 2556666666666666666666544445566
Q ss_pred eeecccCCcCCCccc-------------------CCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 239 VKLVLRNNALTTLRG-------------------IENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 239 ~~L~Ls~N~Ls~L~~-------------------L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
+.|+|++|+|+.++. +..+++|+.|+|++|+|+.+|. ...+++|+.|+|++|+++..+
T Consensus 413 ~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~---~~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 413 RFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD---ASLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC---GGGCTTCCEEECCSSCCCCCC
T ss_pred cEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC---cccCccCCEEecCCCccCCcC
Confidence 666666666554321 1367788888888888887764 356788889999999888653
Q ss_pred ccchhHhhhcCCCceeecCCCccChHHH
Q 002014 300 WYRAQVFSYFAHPAKLKVDGKEISTREL 327 (982)
Q Consensus 300 ~~r~~v~~~l~~L~lL~LdgN~Is~~e~ 327 (982)
...+..++.++.++|++|++.+...
T Consensus 490 ---~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 490 ---DGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp ---TTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ---HHHHhcCcccCEEEecCCCccCCCc
Confidence 3446778899999999999988765
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=1.2e-23 Score=252.93 Aligned_cols=243 Identities=15% Similarity=0.198 Sum_probs=174.5
Q ss_pred ccccCCCCCCchh-----------------hHHHhc--CCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-CCc
Q 002014 66 YVSDLGDHRALEQ-----------------LRRILK--LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST 125 (982)
Q Consensus 66 ~~LdLs~n~~L~~-----------------Lp~~L~--~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~-Lss 125 (982)
..++|++|...+. +|..+. ++++|++|+|++|.+.+.+|..|.++++|++|+|++|. +++
T Consensus 209 ~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~ 288 (636)
T 4eco_A 209 RQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG 288 (636)
T ss_dssp CEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH
T ss_pred CEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc
Confidence 3466777765553 899888 99999999999999999999999999999999999998 998
Q ss_pred -cchhhHHhh------hhhhHhhhccCCCccchh--hcccchhcccCCCCCCCccEEEccCCccc-cchhhcCCCCCCCE
Q 002014 126 -SAAKGLLEL------RHTLEKIICHNSTNALRH--VFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVET 195 (982)
Q Consensus 126 -~~p~~L~~L------~~LLeLLL~~N~L~~L~~--l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~L~~L~~ 195 (982)
.+|..++.+ ++|..+.+.+|.+..++. .+ ..+++|++|++++|+++ .+| .+..+++|+.
T Consensus 289 ~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l----------~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 289 EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL----------QKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH----------TTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred ccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh----------ccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 899999987 888889999998876654 22 23557777777777777 777 6677777777
Q ss_pred EEcCCCCCCCCC-CcCCCCC-CCEEEcCCCCCCCcccccccc--ccceeecccCCcCCCc--ccCC-------CCCCCCE
Q 002014 196 LDLSRNKFAKVD-NLRKCVN-LKHLDLGFNNLRSIAAFSEVS--CHIVKLVLRNNALTTL--RGIE-------NLKSLEG 262 (982)
Q Consensus 196 LdLS~N~Lt~l~-~L~~L~s-L~~LdLS~N~Ls~L~~l~~~L--~sL~~L~Ls~N~Ls~L--~~L~-------~L~sL~~ 262 (982)
|+|++|.++.++ .+..+++ |+.|+|++|.++.+|..+..+ ++|+.|+|++|.+++. ..+. .+++|+.
T Consensus 358 L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp EECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred EECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 777777777654 5666666 777777777777666544432 3677777777777663 2344 5567777
Q ss_pred EECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhh-------cCCCceeecCCCccC
Q 002014 263 LDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY-------FAHPAKLKVDGKEIS 323 (982)
Q Consensus 263 LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~-------l~~L~lL~LdgN~Is 323 (982)
|+|++|.|+.++. ..+..+++|+.|+|++|.++..+. ..+.. ++.|+.++|.+|.++
T Consensus 438 L~Ls~N~l~~lp~-~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 438 INLSNNQISKFPK-ELFSTGSPLSSINLMGNMLTEIPK---NSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp EECCSSCCCSCCT-HHHHTTCCCSEEECCSSCCSBCCS---SSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred EECcCCccCcCCH-HHHccCCCCCEEECCCCCCCCcCH---HHhccccccccccCCccEEECcCCcCC
Confidence 7777777776654 344556777777777777763321 11111 125666777777665
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=7.1e-23 Score=254.58 Aligned_cols=288 Identities=18% Similarity=0.174 Sum_probs=231.1
Q ss_pred CcEEEecCCCcc-chHhhhhcccccccccC-CCCc---------------------------------------------
Q 002014 28 SIVLKLNPAGLH-YVQSRLEALRELERLLA-GAPL--------------------------------------------- 60 (982)
Q Consensus 28 l~~L~L~~~~L~-~Lp~~L~~L~~Le~L~~-~~~~--------------------------------------------- 60 (982)
...|+|..++|. .+|..+.+|+.|+.|.. ....
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 457889999997 88999999999999887 2210
Q ss_pred ----------------cccccccccCCC--CCCchhhHHHhcCCCCCcEEEccCCCCCC-----------------CCCc
Q 002014 61 ----------------DYLRAYVSDLGD--HRALEQLRRILKLLTSLKVVSALPPPARD-----------------PTPL 105 (982)
Q Consensus 61 ----------------~~l~l~~LdLs~--n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~-----------------~iP~ 105 (982)
..+++..+.++. |. +..+|..+.++++|++|+|++|.+++ .+|.
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~-L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~ 483 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNR-ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE-EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS
T ss_pred HHHhhhCccccccccccccchhhceeccccCc-ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh
Confidence 001111122222 33 33389999999999999999999998 3888
Q ss_pred CCC--CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC-Ccc--chhhcccchhccc-CCCCCCCccEEEccCCc
Q 002014 106 SLL--PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNA--LRHVFASRIVEIK-DSPQWNRLSFVSCSCNR 179 (982)
Q Consensus 106 sf~--~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~-L~~--L~~l~~~~l~~L~-~l~~L~~Lq~LdLS~N~ 179 (982)
.++ ++++|++|+|++|.+.+.+|..|.++++|..+.+.+|+ +.. ++.. +..+. .+..+++|++|+|++|+
T Consensus 484 ~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~----i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD----WTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH----HHHHHHCTTTTTTCCEEECCSSC
T ss_pred hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH----HHhhhhcccccCCccEEEeeCCc
Confidence 888 99999999999999999999999999999999999997 653 4432 22232 44567799999999999
Q ss_pred cccchh--hcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCcccccccccc-ceeecccCCcCCCcc-cCC
Q 002014 180 LVIMDE--SLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCH-IVKLVLRNNALTTLR-GIE 255 (982)
Q Consensus 180 Lt~LP~--sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~s-L~~L~Ls~N~Ls~L~-~L~ 255 (982)
|+.+|. .+..+++|+.|+|++|.++.+|.+..+++|+.|+|++|.+..++..+..+++ |+.|+|++|.|+.+| .+.
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~ 639 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCC
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhh
Confidence 999998 8999999999999999999888999999999999999999988877777788 999999999999886 444
Q ss_pred CCC--CCCEEECcCCCCCCCch-h-hhhc--CCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 256 NLK--SLEGLDISYNIISTFSE-L-EFLA--SLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 256 ~L~--sL~~LdLS~N~Ls~l~~-l-~~L~--~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
.++ +|+.|+|++|.|.+..+ + ..+. .+++|+.|+|++|.+...+ ...+..++.|+.|+|.+|.++
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp---~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP---TELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCC---HHHHHTTCCCSEEECCSCCCS
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccC---HHHHccCCCCCEEECCCCcCC
Confidence 443 49999999999977432 1 1122 4458999999999998443 455667889999999999886
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=2e-22 Score=241.85 Aligned_cols=295 Identities=19% Similarity=0.174 Sum_probs=184.7
Q ss_pred CcEEEecCCCccchH-hhhhcccccccccCCCC-c---------cccccccccCCCCCCch-----hhHH----HhcCCC
Q 002014 28 SIVLKLNPAGLHYVQ-SRLEALRELERLLAGAP-L---------DYLRAYVSDLGDHRALE-----QLRR----ILKLLT 87 (982)
Q Consensus 28 l~~L~L~~~~L~~Lp-~~L~~L~~Le~L~~~~~-~---------~~l~l~~LdLs~n~~L~-----~Lp~----~L~~L~ 87 (982)
++.|+++.+.+..++ ..+..+++|+.+..... . ....+..++++++.... .+|. .+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 667777777766554 34555555555543211 0 01112233333321111 1111 344555
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCCccEEEe----------------------------eCCCCCccchhhHHhhhhhhH
Q 002014 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLEL----------------------------RGCDLSTSAAKGLLELRHTLE 139 (982)
Q Consensus 88 ~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdL----------------------------S~N~Lss~~p~~L~~L~~LLe 139 (982)
+|++|+|++|.+.+..|..|.++++|++|+| ++|.+++..|..+..+++|..
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 5555555555555555555554444444443 444555555666777777777
Q ss_pred hhhccCCCcc-chhhcccch-------------hcc--cCCCCCCCccEEEccCCccc---cchhhcCCCCCCCEEEcCC
Q 002014 140 KIICHNSTNA-LRHVFASRI-------------VEI--KDSPQWNRLSFVSCSCNRLV---IMDESLQLLPAVETLDLSR 200 (982)
Q Consensus 140 LLL~~N~L~~-L~~l~~~~l-------------~~L--~~l~~L~~Lq~LdLS~N~Lt---~LP~sL~~L~~L~~LdLS~ 200 (982)
+.+.+|.+.. ++...+..+ ..+ ..+..+++|+.|++++|.+. .+|..+..+++|+.|+|++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 7777776542 221111111 111 11234567777777777765 5566788888888888888
Q ss_pred CCCCCCC--CcCCCCCCCEEEcCCCCCCCccc---------cccccccceeecccCCcCCCcc--cCCCCCCCCEEECcC
Q 002014 201 NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA---------FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISY 267 (982)
Q Consensus 201 N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~---------l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~ 267 (982)
|.|+.++ .+..+++|+.|+|++|.++.++. .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 8888775 47788888888888888876532 2455678888888888888875 478888888888888
Q ss_pred CCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhh-hcCCCceeecCCCccChHH
Q 002014 268 NIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS-YFAHPAKLKVDGKEISTRE 326 (982)
Q Consensus 268 N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~-~l~~L~lL~LdgN~Is~~e 326 (982)
|+|+.+++ ..+..+++|+.|+|++|.++..+ ...+. .++.++.++|.+|++.|..
T Consensus 570 N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 570 NNLNTLPA-SVFNNQVSLKSLNLQKNLITSVE---KKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp SCCCCCCT-TTTTTCTTCCEEECTTSCCCBCC---HHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CCCCcCCH-hHhCCCCCCCEEECCCCcCCccC---hhHhcccccccCEEEccCCCcccCC
Confidence 88888875 55678888888888888887543 33444 5778888888888888754
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=7.8e-24 Score=232.45 Aligned_cols=245 Identities=19% Similarity=0.162 Sum_probs=206.4
Q ss_pred ccccccCCCCCCch--hhHHHhcCCCCCcEEEccC-CCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHh
Q 002014 64 RAYVSDLGDHRALE--QLRRILKLLTSLKVVSALP-PPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEK 140 (982)
Q Consensus 64 ~l~~LdLs~n~~L~--~Lp~~L~~L~~Lk~L~Ls~-N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeL 140 (982)
++..++|+++...+ .+|..+.++++|++|+|++ |.+.+.+|..|..+++|++|+|++|.+++.+|..+..+++|..+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 45678888888776 7899999999999999995 99999999999999999999999999998899999999999999
Q ss_pred hhccCCCc-cchhhcccchhcccCCCCCCCccEEEccCCccc-cchhhcCCCC-CCCEEEcCCCCCCC-CC-CcCCCCCC
Q 002014 141 IICHNSTN-ALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLP-AVETLDLSRNKFAK-VD-NLRKCVNL 215 (982)
Q Consensus 141 LL~~N~L~-~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~L~-~L~~LdLS~N~Lt~-l~-~L~~L~sL 215 (982)
.+.+|.+. .++..+ ..+++|++|++++|.++ .+|..+..++ +|+.|+|++|.++. ++ .+..+. |
T Consensus 131 ~Ls~N~l~~~~p~~~----------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L 199 (313)
T 1ogq_A 131 DFSYNALSGTLPPSI----------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-L 199 (313)
T ss_dssp ECCSSEEESCCCGGG----------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-C
T ss_pred eCCCCccCCcCChHH----------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-c
Confidence 99999766 233222 24679999999999999 8999999998 99999999999984 33 677776 9
Q ss_pred CEEEcCCCCCCCcc-ccccccccceeecccCCcCCCc-ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCC
Q 002014 216 KHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (982)
Q Consensus 216 ~~LdLS~N~Ls~L~-~l~~~L~sL~~L~Ls~N~Ls~L-~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgN 293 (982)
+.|+|++|.++... ..+..+++|+.|+|++|.++.. +.+..+++|+.|+|++|.|++..+ ..+..+++|+.|+|++|
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCC-GGGGGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCC-hHHhcCcCCCEEECcCC
Confidence 99999999998654 4566789999999999999874 678889999999999999984332 67889999999999999
Q ss_pred CCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 294 PLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 294 pLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
+++.... . ...++.++.+.+.+|+.-+
T Consensus 279 ~l~~~ip---~-~~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 279 NLCGEIP---Q-GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp EEEEECC---C-STTGGGSCGGGTCSSSEEE
T ss_pred cccccCC---C-CccccccChHHhcCCCCcc
Confidence 9984421 1 1467788999999998543
No 23
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.7e-22 Score=221.95 Aligned_cols=252 Identities=17% Similarity=0.171 Sum_probs=174.3
Q ss_pred cccccCCCCccccc-cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchh
Q 002014 51 LERLLAGAPLDYLR-AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAK 129 (982)
Q Consensus 51 Le~L~~~~~~~~l~-l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~ 129 (982)
++.....|+..+.+ +..++++++. +..+|..+ .++|+.|+|++|.+++..+..|.++++|++|+|++|.+++..|.
T Consensus 18 i~~~~~~cp~~c~c~l~~l~~~~~~-l~~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (330)
T 1xku_A 18 IEPMGPVCPFRCQCHLRVVQCSDLG-LEKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94 (330)
T ss_dssp ----CCCCCTTCEEETTEEECTTSC-CCSCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT
T ss_pred cccccCCCCCCCcCCCeEEEecCCC-ccccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH
Confidence 33333344444433 2345555543 34455433 36778888888888877777788888888888888888877777
Q ss_pred hHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCC--C
Q 002014 130 GLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V 206 (982)
Q Consensus 130 ~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~--l 206 (982)
.+..+++|..+.+.+|.+..++..+ .++|++|++++|.++.++. .+..+++|+.|++++|.+.. +
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~l~~~~------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 162 (330)
T 1xku_A 95 AFAPLVKLERLYLSKNQLKELPEKM------------PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 162 (330)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCSSC------------CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred HhcCCCCCCEEECCCCcCCccChhh------------cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence 7888888777778777766554322 2477888888888876654 57778888888888887764 2
Q ss_pred --CCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCC
Q 002014 207 --DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASL 282 (982)
Q Consensus 207 --~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L 282 (982)
..+..+++|+.|++++|.++.++.... ++|+.|+|++|.++.+ ..+..+++|+.|+|++|.|+.+++ ..+..+
T Consensus 163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l 239 (330)
T 1xku_A 163 ENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN-GSLANT 239 (330)
T ss_dssp CTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT-TTGGGS
T ss_pred ChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh-hhccCC
Confidence 256777888888888888877765332 6788888888888775 367778888888888888877654 456777
Q ss_pred CCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 283 PYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 283 p~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
++|+.|+|++|+++..+ ..+..++.++.++|.+|+++.
T Consensus 240 ~~L~~L~L~~N~l~~lp----~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 240 PHLRELHLNNNKLVKVP----GGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp TTCCEEECCSSCCSSCC----TTTTTCSSCCEEECCSSCCCC
T ss_pred CCCCEEECCCCcCccCC----hhhccCCCcCEEECCCCcCCc
Confidence 88888888888877443 224566778888888887764
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.9e-22 Score=231.07 Aligned_cols=269 Identities=23% Similarity=0.276 Sum_probs=166.7
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP 104 (982)
+.+.+.|.+..+.+..+|. +..+++|+.| ++++|.. ..++. +..+++|++|+|++|.+.+..|
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L--------------~Ls~n~l-~~~~~-~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQI--------------NFSNNQL-TDITP-LKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEE--------------ECCSSCC-CCCGG-GTTCTTCCEEECCSSCCCCCGG
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEE--------------ECCCCcc-CCchh-hhccccCCEEECCCCccccChh
Confidence 5678999999999998874 6666665554 4444432 22333 6666666666666666665443
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhc----------ccchhcccCCCCCCCccEEE
Q 002014 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVF----------ASRIVEIKDSPQWNRLSFVS 174 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~----------~~~l~~L~~l~~L~~Lq~Ld 174 (982)
+..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+..++... ...+..+..+..+++|++|+
T Consensus 108 --~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 108 --LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 183 (466)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEE
T ss_pred --hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEE
Confidence 6666666666666666665332 566666666666666544433210 00111122234566777777
Q ss_pred ccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccC
Q 002014 175 CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI 254 (982)
Q Consensus 175 LS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L 254 (982)
+++|.++.++ .+..+++|++|++++|.+..++.+..+++|+.|+|++|.++.++. +..+++|+.|++++|.++.++.+
T Consensus 184 l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~ 261 (466)
T 1o6v_A 184 ISSNKVSDIS-VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAPL 261 (466)
T ss_dssp CCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGG
T ss_pred CcCCcCCCCh-hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCCccccchhh
Confidence 7777777664 366677777777777777766556666777777777777766543 23456677777777777666556
Q ss_pred CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
..+++|+.|+|++|.++.+++ +..+++|+.|+|++|.+...+. +..++.|+.++|.+|.++.
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISP-----ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSSCCSCCGG-----GGGCTTCSEEECCSSCCSC
T ss_pred hcCCCCCEEECCCCccCcccc---ccCCCccCeEEcCCCcccCchh-----hcCCCCCCEEECcCCcCCC
Confidence 666677777777776666543 5566666666666666654431 4455666666666666654
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9.9e-23 Score=224.23 Aligned_cols=263 Identities=17% Similarity=0.153 Sum_probs=187.7
Q ss_pred CCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcC
Q 002014 27 GSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLS 106 (982)
Q Consensus 27 sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~s 106 (982)
..+.++++.+++..+|..+. ++ +..+++++|...+..|..+.++++|++|+|++|.+++..|..
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~--------------l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PD--------------TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA 97 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred cCCEEECCCCCccccCCCCC--CC--------------CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence 46788999999888876442 22 233667777644444567888899999999999888888888
Q ss_pred CCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccc---cc
Q 002014 107 LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV---IM 183 (982)
Q Consensus 107 f~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt---~L 183 (982)
|..+++|++|+|++|.++. +|..+. ++|.++.+.+|.+..++...+ ..+++|+.|++++|.++ ..
T Consensus 98 ~~~l~~L~~L~L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~---------~~l~~L~~L~l~~n~l~~~~~~ 165 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVF---------SGLRNMNCIEMGGNPLENSGFE 165 (332)
T ss_dssp STTCTTCCEEECCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGG---------SSCSSCCEEECCSCCCBGGGSC
T ss_pred hhCcCCCCEEECCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHh---------CCCccCCEEECCCCccccCCCC
Confidence 8889999999999998876 444433 566777788887766554322 24668888888888886 33
Q ss_pred hhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCC
Q 002014 184 DESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (982)
Q Consensus 184 P~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (982)
|..+..+ +|+.|++++|.++.++.-. .++|+.|+|++|.++.+++ .+..+++|+.|+|++|.|+.++ .+..+++|
T Consensus 166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 243 (332)
T 2ft3_A 166 PGAFDGL-KLNYLRISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTL 243 (332)
T ss_dssp TTSSCSC-CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTC
T ss_pred cccccCC-ccCEEECcCCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCC
Confidence 4566666 7888888888888776211 2678888888888887763 4555678888888888888764 57778888
Q ss_pred CEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhh------hcCCCceeecCCCccCh
Q 002014 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS------YFAHPAKLKVDGKEIST 324 (982)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~------~l~~L~lL~LdgN~Is~ 324 (982)
+.|+|++|.|+.+| ..+..+++|+.|+|++|+|+..+. ..+. .+..++.+.+.+|++..
T Consensus 244 ~~L~L~~N~l~~lp--~~l~~l~~L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~~ 308 (332)
T 2ft3_A 244 RELHLDNNKLSRVP--AGLPDLKLLQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVPY 308 (332)
T ss_dssp CEEECCSSCCCBCC--TTGGGCTTCCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSCG
T ss_pred CEEECCCCcCeecC--hhhhcCccCCEEECCCCCCCccCh---hHccccccccccccccceEeecCcccc
Confidence 88888888888776 456778888888888888875531 1111 13456778888888764
No 26
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=9e-23 Score=221.48 Aligned_cols=237 Identities=16% Similarity=0.092 Sum_probs=188.0
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCcc--chhhHHhhhhhhHhhhccCCCccchhh
Q 002014 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHV 153 (982)
Q Consensus 76 L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~--~p~~L~~L~~LLeLLL~~N~L~~L~~l 153 (982)
+..+|..+ .++|++|+|++|.+....+..|..+++|++|+|++|.++.. .+..+..+++|..+.+.+|.+..++..
T Consensus 19 l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~ 96 (306)
T 2z66_A 19 LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 96 (306)
T ss_dssp CSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE
T ss_pred cccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh
Confidence 45566533 36889999999998876666788899999999999998853 366777888888888888877655443
Q ss_pred cccchhcccCCCCCCCccEEEccCCccccchh--hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCC--
Q 002014 154 FASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRS-- 227 (982)
Q Consensus 154 ~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~--sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~-- 227 (982)
+ ..+++|++|++++|.++.++. .+..+++|++|++++|.+..+. .+..+++|+.|+|++|.+..
T Consensus 97 ~----------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 97 F----------LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp E----------ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred c----------CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 2 246789999999999997764 7888999999999999988653 57888999999999999876
Q ss_pred ccccccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhH
Q 002014 228 IAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV 305 (982)
Q Consensus 228 L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v 305 (982)
++..+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++..... ..
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~---~~ 242 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNSLQVLDYSLNHIMTSKK---QE 242 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-GGGTTCTTCCEEECTTSCCCBCSS---SS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-hhccCcccCCEeECCCCCCcccCH---HH
Confidence 556667788999999999999886 368889999999999999998875 457889999999999999976531 22
Q ss_pred hhhc-CCCceeecCCCccChHHHH
Q 002014 306 FSYF-AHPAKLKVDGKEISTRELW 328 (982)
Q Consensus 306 ~~~l-~~L~lL~LdgN~Is~~e~~ 328 (982)
+..+ +.++.++|.+|++++....
T Consensus 243 ~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCCCCTTCCEEECTTCCEECSGGG
T ss_pred HHhhhccCCEEEccCCCeecccCh
Confidence 4444 4789999999999876543
No 27
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=4.2e-22 Score=235.64 Aligned_cols=127 Identities=12% Similarity=0.055 Sum_probs=69.9
Q ss_pred hcCCcEEEecCCCccch-HhhhhcccccccccCCCC-c---------cccccccccCCCCCCchhhHHHhcCCCCCcEEE
Q 002014 25 IEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-L---------DYLRAYVSDLGDHRALEQLRRILKLLTSLKVVS 93 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~~~-~---------~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~ 93 (982)
+.+++.|+++.+.+..+ |..+..+++|+.|..... . ....+..+++++|...+..+..+..+++|++|+
T Consensus 56 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 56 LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEE
T ss_pred CccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEE
Confidence 44555666666655544 444555555555443211 0 111223455555543332244556666666666
Q ss_pred ccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhh--HhhhccCCCccch
Q 002014 94 ALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL--EKIICHNSTNALR 151 (982)
Q Consensus 94 Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LL--eLLL~~N~L~~L~ 151 (982)
|++|.+.+..+..+..+++|++|+|++|.+++..|..+..++++. .+.+.+|.+..+.
T Consensus 136 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp CCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred CCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccC
Confidence 666666654434444567777777777777766666677776665 5556666654433
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=4.7e-24 Score=234.20 Aligned_cols=246 Identities=21% Similarity=0.184 Sum_probs=208.4
Q ss_pred cCCcEEEecCCCcc---chHhhhhcccccccccCCCCccccccccccCCC-CCCchhhHHHhcCCCCCcEEEccCCCCCC
Q 002014 26 EGSIVLKLNPAGLH---YVQSRLEALRELERLLAGAPLDYLRAYVSDLGD-HRALEQLRRILKLLTSLKVVSALPPPARD 101 (982)
Q Consensus 26 ~sl~~L~L~~~~L~---~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~-n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~ 101 (982)
...+.|+++.+.+. .+|..+..+++|+.| ++++ +...+.+|..+.++++|++|+|++|.+.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L--------------~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL--------------YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEE--------------EEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCee--------------eCCCCCcccccCChhHhcCCCCCEEECcCCeeCC
Confidence 34568899999888 588888888776654 4553 55666788899999999999999999999
Q ss_pred CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCc-cchhhcccchhcccCCCCCC-CccEEEccCCc
Q 002014 102 PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTN-ALRHVFASRIVEIKDSPQWN-RLSFVSCSCNR 179 (982)
Q Consensus 102 ~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~-~L~~l~~~~l~~L~~l~~L~-~Lq~LdLS~N~ 179 (982)
.+|..|..+++|++|+|++|.|++.+|..+..+++|..+.+.+|.+. .++..+. .++ +|++|++++|+
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~----------~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG----------SFSKLFTSMTISRNR 185 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG----------CCCTTCCEEECCSSE
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh----------hhhhcCcEEECcCCe
Confidence 99999999999999999999999889999999999999999999876 3433222 344 89999999999
Q ss_pred cc-cchhhcCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCC-cc-cC
Q 002014 180 LV-IMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GI 254 (982)
Q Consensus 180 Lt-~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~-L~-~L 254 (982)
++ .+|..+..++ |+.|+|++|.++.. ..+..+++|+.|+|++|.++...+.+..+++|+.|+|++|.|++ +| .+
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH
Confidence 99 8888888887 99999999999864 37889999999999999999777666678999999999999985 44 78
Q ss_pred CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
..+++|+.|+|++|.|++..+ ....+++|+.|++.+|+.-|.
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip--~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIP--QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECC--CSTTGGGSCGGGTCSSSEEES
T ss_pred hcCcCCCEEECcCCcccccCC--CCccccccChHHhcCCCCccC
Confidence 999999999999999985332 247899999999999995444
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=1.2e-22 Score=218.67 Aligned_cols=214 Identities=20% Similarity=0.160 Sum_probs=145.3
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC-Cccchhhc
Q 002014 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALRHVF 154 (982)
Q Consensus 76 L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~-L~~L~~l~ 154 (982)
+..+|.. -.++|++|+|++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|. +..+....
T Consensus 23 l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~ 100 (285)
T 1ozn_A 23 LQAVPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100 (285)
T ss_dssp CSSCCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred cccCCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH
Confidence 4455543 24678888888888887777778888888888888888887667677666665555555553 33332111
Q ss_pred ccchhcccCCCCCCCccEEEccCCccccc-hhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-
Q 002014 155 ASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA- 230 (982)
Q Consensus 155 ~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~- 230 (982)
+..+++|++|++++|.++.+ |..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.++.
T Consensus 101 ---------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 101 ---------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp ---------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ---------hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 12355677777777777755 345667777777777777777664 36677777777777777776665
Q ss_pred cccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 231 FSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 231 l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
.+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HHHTTCTTCCEEECCSSCEECSGGG
T ss_pred HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HHcccCcccCEEeccCCCccCCCCc
Confidence 344567777777777777765 256677777777777777777654 4566777777777777777776643
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=9.3e-22 Score=226.83 Aligned_cols=262 Identities=21% Similarity=0.264 Sum_probs=152.3
Q ss_pred chhcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCC
Q 002014 23 PLIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP 102 (982)
Q Consensus 23 ~lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~ 102 (982)
..+.+++.|+++.+.+..++. +..+++|+.|.. ++|.... ++. +..+++|++|+|++|.+.+.
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l--------------~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~ 127 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILM--------------NNNQIAD-ITP-LANLTNLTGLTLFNNQITDI 127 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC--------------CSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEEC--------------CCCcccc-Chh-hcCCCCCCEEECCCCCCCCC
Confidence 346788999999999999987 777777776543 3333222 222 55566666666666666544
Q ss_pred CCcCCCCCCCccEEEeeCCCCCccch-------------------hhHHhhhhhhHhhhccCCCccchhhcccchhcccC
Q 002014 103 TPLSLLPFCRLKVLELRGCDLSTSAA-------------------KGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (982)
Q Consensus 103 iP~sf~~L~nL~~LdLS~N~Lss~~p-------------------~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~ 163 (982)
.+ +..+++|++|+|++|.+++... ..+..+++|..+.+.+|.+..++ .
T Consensus 128 ~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----------~ 194 (466)
T 1o6v_A 128 DP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-----------V 194 (466)
T ss_dssp GG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-----------G
T ss_pred hH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-----------h
Confidence 32 5556666666666665554210 11334444444444444433332 1
Q ss_pred CCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecc
Q 002014 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (982)
Q Consensus 164 l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (982)
+..+++|++|++++|.+..++. +..+++|+.|++++|.++.++.+..+++|+.|+|++|.+..+++ +..+++|+.|+|
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 272 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKL 272 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEEC
Confidence 2245566666666666665543 55566666666666666666656666666666666666666554 334466666666
Q ss_pred cCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 244 s~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
++|.++.++.+..+++|+.|+|++|.++++++ +..+++|+.|+|++|++..... +..++.|+.+++.+|.++
T Consensus 273 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~ 344 (466)
T 1o6v_A 273 GANQISNISPLAGLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVS 344 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCC
T ss_pred CCCccCccccccCCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccC
Confidence 66666665555666666666666666665542 4555666666666666654321 334555666666666555
Q ss_pred h
Q 002014 324 T 324 (982)
Q Consensus 324 ~ 324 (982)
.
T Consensus 345 ~ 345 (466)
T 1o6v_A 345 D 345 (466)
T ss_dssp C
T ss_pred C
Confidence 4
No 31
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=1.3e-22 Score=252.22 Aligned_cols=259 Identities=14% Similarity=0.182 Sum_probs=193.5
Q ss_pred CCccchHhhhhcccccccccCCCCccccccccccCCCCCCch-----------------hhHHHhc--CCCCCcEEEccC
Q 002014 36 AGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALE-----------------QLRRILK--LLTSLKVVSALP 96 (982)
Q Consensus 36 ~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~-----------------~Lp~~L~--~L~~Lk~L~Ls~ 96 (982)
+.+..||..+.+|++|+.|. |++|...+ .+|..++ ++++|++|+|++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~--------------Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIY--------------FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEE--------------EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred CcccchhHHHhcCCCCCEEE--------------CcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 34444888888888777654 44444433 4888877 999999999999
Q ss_pred CCCCCCCCcCCCCCCCccEEEeeCCC-CCc-cchhhHHhhh-------hhhHhhhccCCCccchh--hcccchhcccCCC
Q 002014 97 PPARDPTPLSLLPFCRLKVLELRGCD-LST-SAAKGLLELR-------HTLEKIICHNSTNALRH--VFASRIVEIKDSP 165 (982)
Q Consensus 97 N~L~~~iP~sf~~L~nL~~LdLS~N~-Lss-~~p~~L~~L~-------~LLeLLL~~N~L~~L~~--l~~~~l~~L~~l~ 165 (982)
|.+.+.+|..|.++++|++|+|++|+ +++ .+|..+..+. +|..+.+.+|.+..++. .+ .
T Consensus 501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l----------~ 570 (876)
T 4ecn_A 501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL----------Q 570 (876)
T ss_dssp CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH----------T
T ss_pred CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh----------h
Confidence 99999999999999999999999998 888 8899898887 88888899998776654 22 2
Q ss_pred CCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCC-CCEEEcCCCCCCCccccccccc--cceee
Q 002014 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVN-LKHLDLGFNNLRSIAAFSEVSC--HIVKL 241 (982)
Q Consensus 166 ~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~s-L~~LdLS~N~Ls~L~~l~~~L~--sL~~L 241 (982)
.+++|+.|+|++|+|+.+| .|..+++|+.|+|++|.++.++ .+..+++ |+.|+|++|.|+.+|..+..++ +|+.|
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEE
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEE
Confidence 4668888888888888887 7888888888888888888776 6777777 8888888888887776554433 48888
Q ss_pred cccCCcCCCc-ccCC------CCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhh-------
Q 002014 242 VLRNNALTTL-RGIE------NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFS------- 307 (982)
Q Consensus 242 ~Ls~N~Ls~L-~~L~------~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~------- 307 (982)
+|++|.|.+. +.+. .+++|+.|+|++|.|+.+|. ..+..+++|+.|+|++|.|...+. ..+.
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~-~~~~~l~~L~~L~Ls~N~L~~ip~---~~~~~~~~~l~ 725 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPT-ELFATGSPISTIILSNNLMTSIPE---NSLKPKDGNYK 725 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCH-HHHHTTCCCSEEECCSCCCSCCCT---TSSSCTTSCCT
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCH-HHHccCCCCCEEECCCCcCCccCh---HHhcccccccc
Confidence 8888887663 3222 34578888888888887764 444577788888888887774432 1111
Q ss_pred hcCCCceeecCCCccC
Q 002014 308 YFAHPAKLKVDGKEIS 323 (982)
Q Consensus 308 ~l~~L~lL~LdgN~Is 323 (982)
.++.|+.|+|.+|.++
T Consensus 726 nl~~L~~L~Ls~N~L~ 741 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLT 741 (876)
T ss_dssp TGGGCCEEECCSSCCC
T ss_pred ccCCccEEECCCCCCc
Confidence 2236777778777775
No 32
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.88 E-value=2.2e-22 Score=238.02 Aligned_cols=152 Identities=18% Similarity=0.145 Sum_probs=88.4
Q ss_pred CCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC---------------------CcCCCCCCCEEEcCCCCCC
Q 002014 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---------------------NLRKCVNLKHLDLGFNNLR 226 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~---------------------~L~~L~sL~~LdLS~N~Ls 226 (982)
++|+.|++++|.+..+| .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.++
T Consensus 285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEE
T ss_pred CCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccC
Confidence 34444444444444444 4444445555555555444333 3445566666666666666
Q ss_pred Cc---cccccccccceeecccCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccc
Q 002014 227 SI---AAFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (982)
Q Consensus 227 ~L---~~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r 302 (982)
.+ +..+..+++|+.|+|++|.++.++ .+..+++|+.|+|++|.+...++...+..+++|+.|++++|.+....
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--- 440 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--- 440 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC---
T ss_pred CCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc---
Confidence 54 233444567777777777766654 56667777777777777766654345666777777777777765331
Q ss_pred hhHhhhcCCCceeecCCCccC
Q 002014 303 AQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 303 ~~v~~~l~~L~lL~LdgN~Is 323 (982)
...+..++.++.++|.+|.++
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~ 461 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFK 461 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEG
T ss_pred hhhhcCCCCCCEEECCCCcCC
Confidence 233445566666666666654
No 33
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=7e-23 Score=224.80 Aligned_cols=236 Identities=17% Similarity=0.178 Sum_probs=189.5
Q ss_pred cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC
Q 002014 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (982)
Q Consensus 67 ~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~ 146 (982)
..+++.+.....++..+..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+++..+ +..+++|..+.+.+|.
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY 91 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc
Confidence 34566665555555666777888999999888888877888888899999999998887554 7788888888888886
Q ss_pred CccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCC
Q 002014 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN 224 (982)
Q Consensus 147 L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~ 224 (982)
+..++. .++|++|++++|+|+.++.. .+++|++|++++|.++.++ .+..+++|+.|+|++|.
T Consensus 92 l~~l~~--------------~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 92 VQELLV--------------GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp EEEEEE--------------CTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC
T ss_pred cccccC--------------CCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC
Confidence 554432 35899999999999977643 4788999999999999874 67788999999999999
Q ss_pred CCCccc--cccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccc
Q 002014 225 LRSIAA--FSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (982)
Q Consensus 225 Ls~L~~--l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r 302 (982)
++.+++ +...+++|+.|+|++|.|+.++....+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+++..+
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~--- 230 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE--- 230 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC---
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchh---
Confidence 988654 334578999999999999998877779999999999999998874 4788899999999999998543
Q ss_pred hhHhhhcCCCceeecCCCccChHH
Q 002014 303 AQVFSYFAHPAKLKVDGKEISTRE 326 (982)
Q Consensus 303 ~~v~~~l~~L~lL~LdgN~Is~~e 326 (982)
..+..++.++.++|++|++.+..
T Consensus 231 -~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 231 -KALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp -TTCCCCTTCCEEECTTCCCBHHH
T ss_pred -hHhhcCCCCCEEEccCCCccCcC
Confidence 23567788999999999998654
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=3.6e-23 Score=224.63 Aligned_cols=267 Identities=20% Similarity=0.221 Sum_probs=205.7
Q ss_pred cEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCC--CCc
Q 002014 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDP--TPL 105 (982)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~-~L~~L~~Lk~L~Ls~N~L~~~--iP~ 105 (982)
..++.+.+++..+|..+. ++ +..+++++|... .+|. .+.++++|++|+|++|.+... .|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~--------------l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 72 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SS--------------ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TT--------------CCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEH
T ss_pred CEEEcCCCCcccCCCCCC--CC--------------CCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCccc
Confidence 367778888888775432 22 233566766543 4554 578999999999999998843 356
Q ss_pred CCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCcccc-ch
Q 002014 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-MD 184 (982)
Q Consensus 106 sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~-LP 184 (982)
.+..+++|++|+|++|.++. +|..+..+++|..+.+.+|.+..++.. ..+..+++|++|++++|.+.. .|
T Consensus 73 ~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~ 143 (306)
T 2z66_A 73 SDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF--------SVFLSLRNLIYLDISHTHTRVAFN 143 (306)
T ss_dssp HHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT--------TTTTTCTTCCEEECTTSCCEECST
T ss_pred ccccccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc--------hhhhhccCCCEEECCCCcCCccch
Confidence 67788999999999999976 666788899988888988876655431 123457899999999999994 45
Q ss_pred hhcCCCCCCCEEEcCCCCCCC--CC-CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCC
Q 002014 185 ESLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLK 258 (982)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Lt~--l~-~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~ 258 (982)
..+..+++|++|+|++|.++. ++ .+..+++|+.|+|++|.++.+++ .+..+++|+.|+|++|.|+.++ .+..++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 223 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLN 223 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCT
T ss_pred hhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcc
Confidence 578899999999999999986 34 78899999999999999998854 5667899999999999999974 588999
Q ss_pred CCCEEECcCCCCCCCchhhhhcCCC-CCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 259 SLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 259 sL~~LdLS~N~Ls~l~~l~~L~~Lp-~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
+|+.|+|++|.|+...+ ..+..++ +|+.|+|++|++.|.|.... ....+...+.+.++.+.+.
T Consensus 224 ~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~L~L~~N~~~~~c~~~~-~~~~l~~~~~~~~~~~~~~ 287 (306)
T 2z66_A 224 SLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTCEHQS-FLQWIKDQRQLLVEVERME 287 (306)
T ss_dssp TCCEEECTTSCCCBCSS-SSCCCCCTTCCEEECTTCCEECSGGGHH-HHHHHHHTGGGBSCGGGCB
T ss_pred cCCEeECCCCCCcccCH-HHHHhhhccCCEEEccCCCeecccChHH-HHHHHHhhhhhhccccccc
Confidence 99999999999998764 5677775 99999999999999975432 2223333333444444443
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.6e-22 Score=247.87 Aligned_cols=243 Identities=20% Similarity=0.168 Sum_probs=168.4
Q ss_pred ccCCCCCCchhhHHHhcC--CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC
Q 002014 68 SDLGDHRALEQLRRILKL--LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (982)
Q Consensus 68 LdLs~n~~L~~Lp~~L~~--L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N 145 (982)
+++++|...+.+|..+.. +++|++|+|++|.+++.+|..|..+++|++|+|++|.+++.+|..+..+++|..+.+.+|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 334444333333333333 444555555555555555555555555555555555555555555555555555555555
Q ss_pred CCcc-chhhcccchhcccCCCCCCCccEEEccCCccc-cchhhcCCCCCCCEEEcCCCCCCC-CC-CcCCCCCCCEEEcC
Q 002014 146 STNA-LRHVFASRIVEIKDSPQWNRLSFVSCSCNRLV-IMDESLQLLPAVETLDLSRNKFAK-VD-NLRKCVNLKHLDLG 221 (982)
Q Consensus 146 ~L~~-L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~L~~L~~LdLS~N~Lt~-l~-~L~~L~sL~~LdLS 221 (982)
.+.. ++.. +..+++|++|++++|+++ .+|..+..+++|++|+|++|+++. +| .+..+++|+.|+|+
T Consensus 453 ~l~~~~p~~----------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 453 MLEGEIPQE----------LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp CCCSCCCGG----------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cccCcCCHH----------HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 4432 1111 124678999999999998 778888899999999999999885 44 68888999999999
Q ss_pred CCCCCC-ccccccccccceeecccCCcCCC-cc-----------------------------------------------
Q 002014 222 FNNLRS-IAAFSEVSCHIVKLVLRNNALTT-LR----------------------------------------------- 252 (982)
Q Consensus 222 ~N~Ls~-L~~l~~~L~sL~~L~Ls~N~Ls~-L~----------------------------------------------- 252 (982)
+|.+.+ +|..+..+++|+.|+|++|.+++ +|
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 999884 55566778899999999998763 22
Q ss_pred ------------------------cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhh
Q 002014 253 ------------------------GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSY 308 (982)
Q Consensus 253 ------------------------~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~ 308 (982)
.+..+++|+.|+|++|++++..+ ..++.++.|+.|+|++|.++... +..+..
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip-~~l~~l~~L~~L~Ls~N~l~g~i---p~~l~~ 678 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIP-KEIGSMPYLFILNLGHNDISGSI---PDEVGD 678 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCC-GGGGGCTTCCEEECCSSCCCSCC---CGGGGG
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCC-HHHhccccCCEEeCcCCccCCCC---ChHHhC
Confidence 23446789999999999986544 67899999999999999998542 245778
Q ss_pred cCCCceeecCCCccCh
Q 002014 309 FAHPAKLKVDGKEIST 324 (982)
Q Consensus 309 l~~L~lL~LdgN~Is~ 324 (982)
++.|+.++|.+|.++.
T Consensus 679 L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDG 694 (768)
T ss_dssp CTTCCEEECCSSCCEE
T ss_pred CCCCCEEECCCCcccC
Confidence 8999999999999874
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=2.5e-22 Score=220.98 Aligned_cols=237 Identities=16% Similarity=0.137 Sum_probs=199.6
Q ss_pred ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC
Q 002014 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (982)
Q Consensus 66 ~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N 145 (982)
..++++++. +..+|..+ .++|+.|+|++|.+.+..|..|.++++|++|+|++|.|++..|..+..+++|..+.+.+|
T Consensus 36 ~~l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLG-LKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSC-CSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCC-ccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 456676664 45677644 478999999999999888889999999999999999999988999999999999999999
Q ss_pred CCccchhhcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCC--C--CCcCCCCCCCEEEc
Q 002014 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--V--DNLRKCVNLKHLDL 220 (982)
Q Consensus 146 ~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~--l--~~L~~L~sL~~LdL 220 (982)
.+..++... .++|++|++++|.++.+|. .+..+++|+.|++++|.++. + ..+..+ +|+.|++
T Consensus 113 ~l~~l~~~~------------~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 113 HLVEIPPNL------------PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCCSCCSSC------------CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred cCCccCccc------------cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 877665432 1589999999999998876 58899999999999999964 2 356666 9999999
Q ss_pred CCCCCCCccccccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 221 GFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 221 S~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
++|.++.++.... ++|+.|+|++|.++.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+++..
T Consensus 180 ~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l 256 (332)
T 2ft3_A 180 SEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRV 256 (332)
T ss_dssp CSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBC
T ss_pred cCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeec
Confidence 9999999876432 78999999999999874 78999999999999999999875 5688999999999999999855
Q ss_pred cccchhHhhhcCCCceeecCCCccChH
Q 002014 299 RWYRAQVFSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 299 ~~~r~~v~~~l~~L~lL~LdgN~Is~~ 325 (982)
+ ..+..++.|+.++|.+|+++..
T Consensus 257 p----~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 257 P----AGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp C----TTGGGCTTCCEEECCSSCCCBC
T ss_pred C----hhhhcCccCCEEECCCCCCCcc
Confidence 4 2366788999999999999853
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=224.15 Aligned_cols=272 Identities=16% Similarity=0.129 Sum_probs=217.4
Q ss_pred cEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCC
Q 002014 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLL 108 (982)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~ 108 (982)
..++.+.+.+..+|..+. ++ +..+++++|...+..+..+.++++|++|+|++|.+++..|..|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~--------------L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EA--------------VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS 97 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TT--------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred eEeeCCCCCccccccccc--cc--------------CcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence 357788888888876443 12 33466777764443344789999999999999999998889999
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCC-ccccch-hh
Q 002014 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLVIMD-ES 186 (982)
Q Consensus 109 ~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N-~Lt~LP-~s 186 (982)
++++|++|+|++|.|++..+..+..+++|..+.+.+|.+..++.. ..+..+++|++|++++| .+..++ ..
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~--------~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET--------SLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS--------CSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch--------hhhccCCCCcEEECCCCccccccCHHH
Confidence 999999999999999987777799999999999999987766540 11235789999999999 577664 57
Q ss_pred cCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCCCCCCcccc-ccccccceeecccCCcCCCcc-----cCCCCC
Q 002014 187 LQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLRNNALTTLR-----GIENLK 258 (982)
Q Consensus 187 L~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls~N~Ls~L~-----~L~~L~ 258 (982)
+..+++|++|++++|.++.+ ..+..+++|+.|+|++|.+..++.. ...+++|+.|+|++|.++.++ ....+.
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~ 249 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNS 249 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCC
T ss_pred ccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccc
Confidence 89999999999999999986 3788999999999999999888763 344789999999999998853 334567
Q ss_pred CCCEEECcCCCCCCCch---hhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHH
Q 002014 259 SLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (982)
Q Consensus 259 sL~~LdLS~N~Ls~l~~---l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~ 327 (982)
.++.++|++|.+++... ...+..+++|+.|+|++|.++..+ ...+..++.++.++|.+|++.+...
T Consensus 250 ~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 250 LIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccC---HHHHhcCCCCCEEEeeCCCccCcCC
Confidence 89999999998876211 145788999999999999998554 3445778899999999999998764
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.87 E-value=2.6e-21 Score=228.06 Aligned_cols=161 Identities=21% Similarity=0.175 Sum_probs=122.1
Q ss_pred CCCCCccEEEccCCcccc-chhhcCCCCCCCEEEcCCCCCCCCC----CcCCCCCCCEEEcCCCCCCC-ccc-ccccccc
Q 002014 165 PQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD----NLRKCVNLKHLDLGFNNLRS-IAA-FSEVSCH 237 (982)
Q Consensus 165 ~~L~~Lq~LdLS~N~Lt~-LP~sL~~L~~L~~LdLS~N~Lt~l~----~L~~L~sL~~LdLS~N~Ls~-L~~-l~~~L~s 237 (982)
..+++|++|++++|.++. +|..+..+++|++|+|++|+++.++ .+..+++|+.|+|++|.++. ++. .+..+++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~ 429 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAES 429 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCccc
Confidence 345677788888887774 6667777888888888888887653 46777888888888888876 554 3455678
Q ss_pred ceeecccCCcCCCcccCCCC-CCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceee
Q 002014 238 IVKLVLRNNALTTLRGIENL-KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLK 316 (982)
Q Consensus 238 L~~L~Ls~N~Ls~L~~L~~L-~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~ 316 (982)
|+.|+|++|+|++.. +..+ ++|+.|+|++|+|+.+| ..+..+++|+.|+|++|.++..+. ..+..++.++.++
T Consensus 430 L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~~ip--~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~ 503 (562)
T 3a79_B 430 ILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIMSIP--KDVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIW 503 (562)
T ss_dssp CCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCCCCC--TTTTSSCCCSEEECCSSCCCCCCT---TSTTTCTTCCCEE
T ss_pred CCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCcccC--hhhcCCCCCCEEECCCCCCCCCCH---HHHhcCCCCCEEE
Confidence 888888888876531 1222 68999999999999887 445699999999999999996553 2467788999999
Q ss_pred cCCCccChHHHHHHH
Q 002014 317 VDGKEISTRELWERQ 331 (982)
Q Consensus 317 LdgN~Is~~e~~~~~ 331 (982)
|.+|++.|.....+.
T Consensus 504 l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 504 LHDNPWDCTCPGIRY 518 (562)
T ss_dssp CCSCCBCCCHHHHHH
T ss_pred ecCCCcCCCcchHHH
Confidence 999999987655443
No 39
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=2.1e-22 Score=238.17 Aligned_cols=270 Identities=15% Similarity=0.096 Sum_probs=216.5
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP 104 (982)
+.+++.|++..+.+..+| .+..+++|+ .+++++|.. +.+| .+ .+++|+.|+|++|...+..
T Consensus 284 l~~L~~L~l~~~~~~~l~-~l~~~~~L~--------------~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~- 344 (606)
T 3vq2_A 284 LANVSAMSLAGVSIKYLE-DVPKHFKWQ--------------SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF- 344 (606)
T ss_dssp GTTCSEEEEESCCCCCCC-CCCTTCCCS--------------EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-
T ss_pred CCCCCEEEecCccchhhh-hccccccCC--------------EEEcccccC-cccc-cC-CCCccceeeccCCcCccch-
Confidence 455667777777776666 344444433 355666665 6777 44 8999999999999665433
Q ss_pred cCCCCCCCccEEEeeCCCCCcc--chhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCcccc
Q 002014 105 LSLLPFCRLKVLELRGCDLSTS--AAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI 182 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~--~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~ 182 (982)
.+..+++|++|+|++|.+++. .|..+..+++|..+.+.+|.+..++.. +..+++|+.|++++|.+..
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----------~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN----------FMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC----------CTTCTTCCEEECTTSEEES
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhh----------ccCCCCCCeeECCCCccCC
Confidence 677899999999999999875 378899999999999999876665522 2357799999999999996
Q ss_pred chh--hcCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCCCCCC--ccccccccccceeecccCCcCCCcc--cC
Q 002014 183 MDE--SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRS--IAAFSEVSCHIVKLVLRNNALTTLR--GI 254 (982)
Q Consensus 183 LP~--sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N~Ls~--L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L 254 (982)
++. .+..+++|++|++++|.++.. ..+..+++|+.|+|++|.+.+ ++..+..+++|+.|+|++|.++.++ .+
T Consensus 414 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 493 (606)
T 3vq2_A 414 VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493 (606)
T ss_dssp TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence 653 788999999999999999874 368899999999999999987 4566777899999999999999863 68
Q ss_pred CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcC-CCceeecCCCccChHHHHH
Q 002014 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA-HPAKLKVDGKEISTRELWE 329 (982)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~-~L~lL~LdgN~Is~~e~~~ 329 (982)
..+++|+.|+|++|+++++.+ ..+..+++|+.|+|++|+++..+. . +..++ .++.+++.+|++.|.....
T Consensus 494 ~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l~~~p~---~-~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 494 DTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRIETSKG---I-LQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCCCCEES---C-GGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred cccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcCcccCH---h-HhhhcccCcEEEccCCCcccCCccH
Confidence 999999999999999999854 678999999999999999986542 2 55565 5999999999999866543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=6.5e-22 Score=222.24 Aligned_cols=238 Identities=19% Similarity=0.204 Sum_probs=119.4
Q ss_pred ccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC
Q 002014 68 SDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (982)
Q Consensus 68 LdLs~n~~L~~Lp~-~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~ 146 (982)
+++.++. ++.+|. .+..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..+..+++|..+.+.+|.
T Consensus 50 l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 128 (390)
T 3o6n_A 50 VTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND 128 (390)
T ss_dssp EEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc
Confidence 4444443 333433 34556666666666666665555566666666666666666666555555666666666666665
Q ss_pred CccchhhcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCCCcCCC-------------
Q 002014 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKC------------- 212 (982)
Q Consensus 147 L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L------------- 212 (982)
+..++...+ ..+++|++|++++|.++.++. .+..+++|++|++++|.++.++ +..+
T Consensus 129 l~~l~~~~~---------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 129 LSSLPRGIF---------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp CCCCCTTTT---------TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-GGGCTTCSEEECCSSCC
T ss_pred cCcCCHHHh---------cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-cccccccceeecccccc
Confidence 554443221 124455555555555554432 3555555555555555554431 1111
Q ss_pred ---------------------------CCCCEEEcCCCCCCCccccccccccceeecccCCcCCCc--ccCCCCCCCCEE
Q 002014 213 ---------------------------VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGL 263 (982)
Q Consensus 213 ---------------------------~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~L 263 (982)
++|+.|+|++|.++.++ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|
T Consensus 199 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (390)
T 3o6n_A 199 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 277 (390)
T ss_dssp SEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred cccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH-HHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence 23444444444444332 222334555555555555543 244555555555
Q ss_pred ECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 264 dLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
+|++|.|+.++ ..+..+++|+.|+|++|++...+ ..+..++.|+.++|.+|+++
T Consensus 278 ~L~~n~l~~~~--~~~~~l~~L~~L~L~~n~l~~~~----~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 278 YISNNRLVALN--LYGQPIPTLKVLDLSHNHLLHVE----RNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp ECCSSCCCEEE--CSSSCCTTCCEEECCSSCCCCCG----GGHHHHTTCSEEECCSSCCC
T ss_pred ECCCCcCcccC--cccCCCCCCCEEECCCCcceecC----ccccccCcCCEEECCCCccc
Confidence 55555555543 22344555555555555554332 11334455555555555554
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=4.6e-22 Score=238.76 Aligned_cols=270 Identities=16% Similarity=0.152 Sum_probs=212.9
Q ss_pred chhcCCcEEEecCCCccchHh-hhhcccccccccCCCCc--------c------ccccccccCCCCCCchhhHHHhcCCC
Q 002014 23 PLIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAPL--------D------YLRAYVSDLGDHRALEQLRRILKLLT 87 (982)
Q Consensus 23 ~lL~sl~~L~L~~~~L~~Lp~-~L~~L~~Le~L~~~~~~--------~------~l~l~~LdLs~n~~L~~Lp~~L~~L~ 87 (982)
..+.+++.|++..+.+..++. .+..+++|+.+...... . ...+..+++++|...+..|..+..++
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCC
Confidence 346677888888888887654 35677777776653210 0 01345677777776666677788888
Q ss_pred CCcEEEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCC
Q 002014 88 SLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (982)
Q Consensus 88 ~Lk~L~Ls~N~L~~~iP-~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (982)
+|+.|+|++|.+.+.+| ..|.++++|++|+|++|.+++..+..+..++.+..+.+.+|.+..+... + ..+..
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-p------~~~~~ 478 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS-P------SPFQP 478 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS-S------CTTTT
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC-C------ccccc
Confidence 88888888888876544 6788888888888888888877777888888888887877765433211 1 11345
Q ss_pred CCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC----------CcCCCCCCCEEEcCCCCCCCccc-cccc
Q 002014 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD----------NLRKCVNLKHLDLGFNNLRSIAA-FSEV 234 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~----------~L~~L~sL~~LdLS~N~Ls~L~~-l~~~ 234 (982)
+++|++|++++|+|+.+|. .|..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.++. .+..
T Consensus 479 l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 7899999999999997776 6899999999999999998752 37889999999999999999886 4677
Q ss_pred cccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhc-CCCCCcEEEecCCCCCCCcc
Q 002014 235 SCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLA-SLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 235 L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~-~Lp~L~~L~LsgNpLs~~~~ 300 (982)
+++|+.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+++ ..+. .+++|+.|+|++||+.|.|.
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEK-KVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCH-HHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccCh-hHhcccccccCEEEccCCCcccCCc
Confidence 899999999999999985 47899999999999999999875 4455 78999999999999999985
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=4e-21 Score=225.96 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=103.9
Q ss_pred cCCCCCCCEEEcCCCCCC-C-ccccccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCC
Q 002014 209 LRKCVNLKHLDLGFNNLR-S-IAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (982)
Q Consensus 209 L~~L~sL~~LdLS~N~Ls-~-L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~ 284 (982)
+..++.|+.|+|++|.+. . ++..+..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++ ..+..+++
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~-~~~~~l~~ 543 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-FPYKCLNS 543 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCC-GGGTTCTT
T ss_pred cccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCCh-hHHhCCCC
Confidence 445566777777777543 2 2335566789999999999999973 68999999999999999999876 66889999
Q ss_pred CcEEEecCCCCCCCcccchhHhhhc-CCCceeecCCCccChHHHHHHHHHHHhhcC----CCCCccccCCCCCC
Q 002014 285 LLNLWLEGNPLCCSRWYRAQVFSYF-AHPAKLKVDGKEISTRELWERQLIIARRQK----RPAGFGFYSPAKGN 353 (982)
Q Consensus 285 L~~L~LsgNpLs~~~~~r~~v~~~l-~~L~lL~LdgN~Is~~e~~~~~~l~~~~~~----~~~~~~~~~P~~~~ 353 (982)
|+.|+|++|.|+... ...+..+ +.|+.++|.+||+.|++...+...+.+... .+..+.|..|....
T Consensus 544 L~~L~Ls~N~l~~~~---~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~ 614 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 614 (635)
T ss_dssp CCEEECTTSCCCBCC---SSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTT
T ss_pred CCEEECCCCcCCCCC---HHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHC
Confidence 999999999998653 2334445 579999999999998876554433333221 23355676665543
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=1.1e-21 Score=228.94 Aligned_cols=135 Identities=26% Similarity=0.352 Sum_probs=114.2
Q ss_pred CCCCCccEEEccCCccccch---hhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccccc--------
Q 002014 165 PQWNRLSFVSCSCNRLVIMD---ESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFS-------- 232 (982)
Q Consensus 165 ~~L~~Lq~LdLS~N~Lt~LP---~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~-------- 232 (982)
..+++|++|++++|+|+.+| ..+..+++|++|+|++|+++.+| .+..+++|+.|+|++|.|+.++...
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 437 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLD 437 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEE
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEE
Confidence 45688999999999998776 35888999999999999998876 5777788888888888877654321
Q ss_pred ----------cccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 233 ----------EVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 233 ----------~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
..+++|+.|+|++|+|+.+|....+++|+.|+|++|+|+++++ ..+..+++|+.|+|++|++.|.|.
T Consensus 438 Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 438 VSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCCT-TGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcCH-HHHhcCcccCEEEecCCCccCCCc
Confidence 2468999999999999999877889999999999999999875 668899999999999999999874
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.5e-21 Score=232.61 Aligned_cols=227 Identities=20% Similarity=0.201 Sum_probs=137.3
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcc
Q 002014 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (982)
Q Consensus 82 ~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L 161 (982)
.+..+++|++|+|++|.+.+..|..|..+++|++|+|++|.|++..|..|..+++|..+.+.+|.+..++...+.
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~----- 144 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH----- 144 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc-----
Confidence 445566666666666666655555566666666666666666655555555566555555655555544432211
Q ss_pred cCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCCCcCC-----------------------------
Q 002014 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRK----------------------------- 211 (982)
Q Consensus 162 ~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~----------------------------- 211 (982)
.+++|++|+|++|.|+.++. .|..+++|++|+|++|.++.++ +..
T Consensus 145 ----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls 219 (597)
T 3oja_B 145 ----NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLLSTLAIPIAVEELDAS 219 (597)
T ss_dssp ----TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-GGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred ----cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-hhhhhhhhhhhcccCccccccCCchhheeecc
Confidence 23455555555555553332 4555555555555555554432 111
Q ss_pred -----------CCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhh
Q 002014 212 -----------CVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL--RGIENLKSLEGLDISYNIISTFSELEF 278 (982)
Q Consensus 212 -----------L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~ 278 (982)
.++|+.|+|++|.+++++ .+..+++|+.|+|++|.|+.+ ..+..+++|+.|+|++|.|+.++ ..
T Consensus 220 ~n~l~~~~~~~~~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--~~ 296 (597)
T 3oja_B 220 HNSINVVRGPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--LY 296 (597)
T ss_dssp SSCCCEEECSCCSCCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--CS
T ss_pred CCcccccccccCCCCCEEECCCCCCCCCh-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--cc
Confidence 134555556666555542 334457788888888888775 36777888888888888888775 34
Q ss_pred hcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChH
Q 002014 279 LASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 279 L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~ 325 (982)
+..+++|+.|+|++|++...+ ..+..++.|+.|+|.+|.++..
T Consensus 297 ~~~l~~L~~L~Ls~N~l~~i~----~~~~~l~~L~~L~L~~N~l~~~ 339 (597)
T 3oja_B 297 GQPIPTLKVLDLSHNHLLHVE----RNQPQFDRLENLYLDHNSIVTL 339 (597)
T ss_dssp SSCCTTCCEEECCSSCCCCCG----GGHHHHTTCSEEECCSSCCCCC
T ss_pred cccCCCCcEEECCCCCCCccC----cccccCCCCCEEECCCCCCCCc
Confidence 566788888888888887544 2245677888888888887643
No 45
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=227.28 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=95.7
Q ss_pred cCCCCCCCEEEcCCCCCCCCC---CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCC--cc-cCCCCCC
Q 002014 187 LQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTT--LR-GIENLKS 259 (982)
Q Consensus 187 L~~L~~L~~LdLS~N~Lt~l~---~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~--L~-~L~~L~s 259 (982)
+..+++|++|++++|.+..+. .+..+++|+.|+|++|.+....+ .+..+++|+.|+|++|.++. +| .+..+++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~ 471 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence 334444444444444444321 35566677777777776665433 44556788888888888763 43 6788889
Q ss_pred CCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHH
Q 002014 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (982)
Q Consensus 260 L~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e 326 (982)
|+.|+|++|.++.+++ ..+..+++|+.|+|++|+++..+ ...+..++.++.++|.+|++++..
T Consensus 472 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 472 LTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp CCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred CCEEECCCCccccCCh-hhhhcccCCCEEeCCCCcCCCCC---HHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999888744 56788999999999999988654 244667888999999999998764
No 46
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=3.6e-21 Score=223.66 Aligned_cols=129 Identities=20% Similarity=0.244 Sum_probs=69.2
Q ss_pred CCCCCCCEEEcCCCCCCC--CCCcCCCCCCCEEEcCCCCCCCcc---ccccccccceeecccCCcCCC-cc--cCCCCCC
Q 002014 188 QLLPAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRSIA---AFSEVSCHIVKLVLRNNALTT-LR--GIENLKS 259 (982)
Q Consensus 188 ~~L~~L~~LdLS~N~Lt~--l~~L~~L~sL~~LdLS~N~Ls~L~---~l~~~L~sL~~L~Ls~N~Ls~-L~--~L~~L~s 259 (982)
..+++|++|++++|.++. +..+..+++|+.|+|++|.++.++ ..+..+++|+.|+|++|.++. ++ .+..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 345556666666666555 224555566666666666665433 223445566666666666655 43 3555566
Q ss_pred CCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 260 L~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
|+.|+|++|.|++..+ ..+. ++|+.|+|++|.++..+ ..+..++.++.++|.+|.++
T Consensus 401 L~~L~Ls~N~l~~~~~-~~l~--~~L~~L~Ls~N~l~~ip----~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 401 LLSLNMSSNILTDTIF-RCLP--PRIKVLDLHSNKIKSIP----KQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp CCEEECCSSCCCGGGG-GSCC--TTCCEEECCSSCCCCCC----GGGGGCTTCCEEECCSSCCC
T ss_pred CCEEECcCCCCCcchh-hhhc--ccCCEEECCCCcccccc----hhhhcCCCCCEEECCCCcCC
Confidence 6666666666553221 1111 46666666666665333 11225566666666666665
No 47
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=228.70 Aligned_cols=154 Identities=20% Similarity=0.178 Sum_probs=96.5
Q ss_pred CCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCC---------------------cCCCCCCCEEEcCCCC
Q 002014 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDN---------------------LRKCVNLKHLDLGFNN 224 (982)
Q Consensus 166 ~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~---------------------L~~L~sL~~LdLS~N~ 224 (982)
.+++|+.|++++|.++.+|..+..+ +|+.|++++|.+..++. ...+++|+.|+|++|.
T Consensus 280 ~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 280 CLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358 (570)
T ss_dssp GGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred CcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence 3567888888888888777777666 67777777776665432 1345667777777777
Q ss_pred CCCcc---ccccccccceeecccCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 225 LRSIA---AFSEVSCHIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 225 Ls~L~---~l~~~L~sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
++.+. ..+..+++|+.|+|++|.++.++ .+..+++|+.|++++|.+...++...+..+++|+.|++++|.+....
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF- 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC-
T ss_pred cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc-
Confidence 66542 33344566777777777666653 46666677777777776665543334566666777777766665331
Q ss_pred cchhHhhhcCCCceeecCCCccC
Q 002014 301 YRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 301 ~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
...+..++.|+.+.|.+|.++
T Consensus 438 --~~~~~~l~~L~~L~l~~n~l~ 458 (570)
T 2z63_A 438 --NGIFNGLSSLEVLKMAGNSFQ 458 (570)
T ss_dssp --TTTTTTCTTCCEEECTTCEEG
T ss_pred --hhhhhcCCcCcEEECcCCcCc
Confidence 233445566666666666654
No 48
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=3.5e-22 Score=218.71 Aligned_cols=219 Identities=19% Similarity=0.169 Sum_probs=160.4
Q ss_pred ccCCCCCC-chhhHHHhc-------CCCCCcEEEccCCCCCCCCCcCC--CCCCCccEEEeeCCCCCccchhhHHhhhhh
Q 002014 68 SDLGDHRA-LEQLRRILK-------LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHT 137 (982)
Q Consensus 68 LdLs~n~~-L~~Lp~~L~-------~L~~Lk~L~Ls~N~L~~~iP~sf--~~L~nL~~LdLS~N~Lss~~p~~L~~L~~L 137 (982)
+++++|.. ...+|..+. ++++|++|+|++|.+++.+|..+ ..+++|++|+|++|.+++. |..+..+...
T Consensus 68 L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~ 146 (312)
T 1wwl_A 68 LSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQW 146 (312)
T ss_dssp CCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTT
T ss_pred cccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHh
Confidence 44555543 223444444 79999999999999999888876 8999999999999999986 7777776420
Q ss_pred hHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccch-hhcCCCCCCCEEEcCCCCCCCC----CC--cC
Q 002014 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKV----DN--LR 210 (982)
Q Consensus 138 LeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~l----~~--L~ 210 (982)
.+++|++|+|++|+|+.++ ..+..+++|++|+|++|++.+. +. +.
T Consensus 147 ----------------------------~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 147 ----------------------------LKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp ----------------------------CCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred ----------------------------hcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 1247888888888888665 5778888888888888886642 22 36
Q ss_pred CCCCCCEEEcCCCCCCCccc----cccccccceeecccCCcCCCc---ccCCCCCCCCEEECcCCCCCCCchhhhhcCCC
Q 002014 211 KCVNLKHLDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTL---RGIENLKSLEGLDISYNIISTFSELEFLASLP 283 (982)
Q Consensus 211 ~L~sL~~LdLS~N~Ls~L~~----l~~~L~sL~~L~Ls~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp 283 (982)
.+++|+.|+|++|.|+.++. .+..+++|+.|+|++|.|+.. +.+..+++|+.|+|++|.|+.+|. .+. +
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--~~~--~ 274 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--GLP--A 274 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--SCC--S
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--hcc--C
Confidence 77888888888888875543 233457888888888888773 345667788888888888887763 333 7
Q ss_pred CCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 284 YLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 284 ~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
+|+.|+|++|+|+..+. +..++.++.++|++|+++.
T Consensus 275 ~L~~L~Ls~N~l~~~p~-----~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 275 KLSVLDLSYNRLDRNPS-----PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EEEEEECCSSCCCSCCC-----TTTSCEEEEEECTTCTTTC
T ss_pred CceEEECCCCCCCCChh-----HhhCCCCCEEeccCCCCCC
Confidence 78888888888876532 4566778888888888764
No 49
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=6.7e-21 Score=207.49 Aligned_cols=203 Identities=24% Similarity=0.204 Sum_probs=165.6
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhccc
Q 002014 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (982)
Q Consensus 83 L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~ 162 (982)
+.++++|+.|++.+|.++. +|..+. ++|+.|+|++|.|++..+..|..+++|..+.+.+|.+..++..
T Consensus 6 ~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC---------
T ss_pred ccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC---------
Confidence 4567788888888888874 444443 6788888888888887777788887777777777766554431
Q ss_pred CCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccce
Q 002014 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV 239 (982)
Q Consensus 163 ~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~ 239 (982)
..+++|++|+|++|+|+.+|..+..+++|++|+|++|+|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+
T Consensus 74 --~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 --GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp --SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred --CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 2467899999999999999988889999999999999999875 58889999999999999998876 345678999
Q ss_pred eecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 240 KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 240 ~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
.|+|++|+|+.++ .+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++||+.|.|..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--hhhcccccCCeEEeCCCCccCcCcc
Confidence 9999999999985 4678999999999999999887 4567778999999999999998743
No 50
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=8.3e-22 Score=229.92 Aligned_cols=217 Identities=17% Similarity=0.166 Sum_probs=166.2
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCC
Q 002014 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (982)
Q Consensus 86 L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~ 165 (982)
+++|+.|+|++|.+.+..|..|..+++|++|+|++|.|++..| +..+++|..+.+.+|.+..++.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~------------- 97 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV------------- 97 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-------------
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-------------
Confidence 3378888888888887777778888888888888888876555 7777777777777776554432
Q ss_pred CCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-c-ccccccceee
Q 002014 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-F-SEVSCHIVKL 241 (982)
Q Consensus 166 ~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l-~~~L~sL~~L 241 (982)
.++|++|++++|.|+.++. ..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+++++ . ...+++|+.|
T Consensus 98 -~~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 98 -GPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174 (487)
T ss_dssp -CTTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred -CCCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence 2578888888888887654 34678888888888888863 67778888888888888887554 2 2357888888
Q ss_pred cccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCc
Q 002014 242 VLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (982)
Q Consensus 242 ~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~ 321 (982)
+|++|.|+.++.+..+++|+.|+|++|.|+++++ .+..+++|+.|+|++|.|+..+ ..+..++.++.++|.+|+
T Consensus 175 ~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp----~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 175 NLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIE----KALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp ECTTSCCCEEECCCCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEEC----TTCCCCTTCCEEECTTCC
T ss_pred ecCCCccccccccccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccc----hhhccCCCCCEEEcCCCC
Confidence 8888888888777778888888888888888764 4778888888888888887543 235566788888888888
Q ss_pred cChHH
Q 002014 322 ISTRE 326 (982)
Q Consensus 322 Is~~e 326 (982)
+.+..
T Consensus 249 l~c~~ 253 (487)
T 3oja_A 249 FHCGT 253 (487)
T ss_dssp BCHHH
T ss_pred CcCcc
Confidence 88654
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=6.6e-21 Score=235.97 Aligned_cols=291 Identities=18% Similarity=0.130 Sum_probs=207.7
Q ss_pred hhcCCcEEEecCCCccch-HhhhhcccccccccCCCC-----------ccccccccccCCCCCCchhhHHHhcCCCCCcE
Q 002014 24 LIEGSIVLKLNPAGLHYV-QSRLEALRELERLLAGAP-----------LDYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~~L-p~~L~~L~~Le~L~~~~~-----------~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~ 91 (982)
+..+.+.|+|+.+.+..+ |..+..+++|+.|..... .....+..++|++|......|..|.++++|++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 567788999999999877 566788888888776332 11223467888888877666888999999999
Q ss_pred EEccCCCCCCCCCcC--CCCCCCccEEEeeCCCCCccch-hhHHhhhhhhHhhhccCCCccchhhcccch--hccc----
Q 002014 92 VSALPPPARDPTPLS--LLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNSTNALRHVFASRI--VEIK---- 162 (982)
Q Consensus 92 L~Ls~N~L~~~iP~s--f~~L~nL~~LdLS~N~Lss~~p-~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l--~~L~---- 162 (982)
|+|++|.+.+..|.. |.++++|++|+|++|.+++..+ ..|.++++|..+.+.+|.+..+.......+ ..+.
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999998766654 8899999999999999987654 578889998888888887655432211111 0000
Q ss_pred -----------CCCCCC------CccEEEccCCccc-cchhhc------------------------------------C
Q 002014 163 -----------DSPQWN------RLSFVSCSCNRLV-IMDESL------------------------------------Q 188 (982)
Q Consensus 163 -----------~l~~L~------~Lq~LdLS~N~Lt-~LP~sL------------------------------------~ 188 (982)
.+..+. .|+.|++++|.++ .+|..+ .
T Consensus 182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~ 261 (844)
T 3j0a_A 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA 261 (844)
T ss_dssp CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence 001111 3788888888665 222211 1
Q ss_pred C--CCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCc--ccCCCCCCCC
Q 002014 189 L--LPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTL--RGIENLKSLE 261 (982)
Q Consensus 189 ~--L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L--~~L~~L~sL~ 261 (982)
. .++|+.|+|++|.+..+. .+..+++|+.|+|++|.+..+++ .+..+++|+.|+|++|.|+.+ ..+..+++|+
T Consensus 262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 1 257888888888887653 57778888888888888877654 455677888888888888776 3677888888
Q ss_pred EEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
.|+|++|.|+.+++ ..+..+++|+.|+|++|.++..+. ++.++.+.+.+|.++
T Consensus 342 ~L~L~~N~i~~~~~-~~~~~l~~L~~L~Ls~N~l~~i~~--------~~~L~~L~l~~N~l~ 394 (844)
T 3j0a_A 342 YIDLQKNHIAIIQD-QTFKFLEKLQTLDLRDNALTTIHF--------IPSIPDIFLSGNKLV 394 (844)
T ss_dssp EEECCSCCCCCCCS-SCSCSCCCCCEEEEETCCSCCCSS--------CCSCSEEEEESCCCC
T ss_pred EEECCCCCCCccCh-hhhcCCCCCCEEECCCCCCCcccC--------CCCcchhccCCCCcc
Confidence 88888888887764 456778888888888888874431 456777777777765
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-22 Score=222.43 Aligned_cols=229 Identities=16% Similarity=0.151 Sum_probs=187.2
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhcc
Q 002014 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (982)
Q Consensus 65 l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~ 144 (982)
+..+++++|......|..+..+++|++|+|++|.+.+..| |..+++|++|+|++|.|++..+ .+.+..+.+.+
T Consensus 36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~ 108 (317)
T 3o53_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (317)
T ss_dssp CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCC
Confidence 3457788887666667899999999999999999987665 8999999999999999987442 36677788888
Q ss_pred CCCccchhhcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--Cc-CCCCCCCEEEc
Q 002014 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NL-RKCVNLKHLDL 220 (982)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L-~~L~sL~~LdL 220 (982)
|.+..+... .+++|++|++++|+++.++. .+..+++|++|+|++|.++.++ .+ ..+++|+.|+|
T Consensus 109 n~l~~~~~~------------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 109 NNISRVSCS------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp SCCSEEEEC------------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CccCCcCcc------------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 877655431 25689999999999997765 7888999999999999999863 44 47899999999
Q ss_pred CCCCCCCccccccccccceeecccCCcCCCc-ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 221 GFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 221 S~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L-~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
++|.|+.++.... +++|+.|+|++|+|+.+ +.+..+++|+.|+|++|.|+.++ ..+..+++|+.|+|++|++.|.+
T Consensus 177 ~~N~l~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~--~~~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 177 QYNFIYDVKGQVV-FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp TTSCCCEEECCCC-CTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC--TTCCCCTTCCEEECTTCCCBHHH
T ss_pred CCCcCcccccccc-cccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh--hHhhcCCCCCEEEccCCCccCcC
Confidence 9999999876543 79999999999999997 47889999999999999999987 46889999999999999998653
Q ss_pred ccchhHhhhcCCCceeec
Q 002014 300 WYRAQVFSYFAHPAKLKV 317 (982)
Q Consensus 300 ~~r~~v~~~l~~L~lL~L 317 (982)
....+..++.++.+.+
T Consensus 254 --~~~~~~~~~~L~~l~l 269 (317)
T 3o53_A 254 --LRDFFSKNQRVQTVAK 269 (317)
T ss_dssp --HHHHHHTCHHHHHHHH
T ss_pred --HHHHHhccccceEEEC
Confidence 2234444544444443
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=3.4e-22 Score=221.84 Aligned_cols=254 Identities=19% Similarity=0.181 Sum_probs=204.3
Q ss_pred chhcCCcEEEecCCCccchHh-hhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCC
Q 002014 23 PLIEGSIVLKLNPAGLHYVQS-RLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARD 101 (982)
Q Consensus 23 ~lL~sl~~L~L~~~~L~~Lp~-~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~ 101 (982)
.+..+++.|+++.+.+..++. .+..+++|+. +++++|...+..|..+.++++|++|+|++|.+++
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~--------------L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQA--------------LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCE--------------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCE--------------EECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 345678999999999999876 5666666555 4566665555456678999999999999999998
Q ss_pred CCCcCCCCCCCccEEEeeCCCCCccch-hhHHhhhhhhHhhhccCC-CccchhhcccchhcccCCCCCCCccEEEccCCc
Q 002014 102 PTPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKIICHNS-TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNR 179 (982)
Q Consensus 102 ~iP~sf~~L~nL~~LdLS~N~Lss~~p-~~L~~L~~LLeLLL~~N~-L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~ 179 (982)
..+..|..+++|++|+|++|.++...+ ..+..+++|..+.+.+|. +..+... .+..+++|++|++++|.
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~---------~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK---------DFAGLTFLEELEIDASD 185 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT---------TTTTCCEEEEEEEEETT
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH---------HccCCCCCCEEECCCCC
Confidence 777779999999999999999987444 478889998888888883 4444322 12357799999999999
Q ss_pred cccc-hhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcccc----ccccccceeecccCCcCCC--
Q 002014 180 LVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF----SEVSCHIVKLVLRNNALTT-- 250 (982)
Q Consensus 180 Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l----~~~L~sL~~L~Ls~N~Ls~-- 250 (982)
++.+ |..+..+++|++|++++|.+..++ .+..+++|+.|+|++|.++.++.. ......++.++|+++.+..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~ 265 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES 265 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHH
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcc
Confidence 9955 778999999999999999998875 345689999999999999886531 2234667888888887776
Q ss_pred ---cc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 251 ---LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 251 ---L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 266 l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~-~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 266 LFQVMKLLNQISGLLELEFSRNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHHHHTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhhHHHHhcccCCCEEECCCCCCCccCH-HHHhcCCCCCEEEeeCCCccCcCC
Confidence 33 67889999999999999999874 446899999999999999999874
No 54
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3.5e-21 Score=206.14 Aligned_cols=204 Identities=23% Similarity=0.306 Sum_probs=141.1
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCC
Q 002014 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (982)
++|++|+|++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|..+.+.+|.+..+.... +..
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---------~~~ 98 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGA---------FSG 98 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT---------TTT
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhh---------hcC
Confidence 35666666666666555555666666666666666666555545555555555555555443332211 124
Q ss_pred CCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCC--CC-CcCCCCCCCEEEcCCCCCCCccc-cccccccce--
Q 002014 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAK--VD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIV-- 239 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~--l~-~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~-- 239 (982)
+++|++|++++|.+..++. .+..+++|++|++++|.++. ++ .+..+++|+.|+|++|.++.++. .+..+++|+
T Consensus 99 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l 178 (276)
T 2z62_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178 (276)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccc
Confidence 5678888888888887665 67888888888888888886 33 67888888888888888887754 333445555
Q ss_pred --eecccCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 240 --KLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 240 --~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
.|++++|.|+.++ ......+|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.|.
T Consensus 179 ~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 179 NLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCT-TTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ceeeecCCCcccccCccccCCCcccEEECCCCceeecCH-hHhcccccccEEEccCCcccccCC
Confidence 7888888888864 44445588888888888888774 556788888888888888888763
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.3e-21 Score=213.31 Aligned_cols=227 Identities=16% Similarity=0.138 Sum_probs=142.0
Q ss_pred ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC
Q 002014 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (982)
Q Consensus 66 ~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N 145 (982)
..++|+++. +..+|..+..+++|++|+|++|.+. .+|..|..+++|++|+|++|.++ .+|..+..+++|..+.+.+|
T Consensus 84 ~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n 160 (328)
T 4fcg_A 84 VALELRSVP-LPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160 (328)
T ss_dssp CEEEEESSC-CSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEE
T ss_pred eEEEccCCC-chhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCC
Confidence 345566554 3356766777778888888877777 66777777788888888888777 45666766665555555554
Q ss_pred CC-ccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCC
Q 002014 146 ST-NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFN 223 (982)
Q Consensus 146 ~L-~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N 223 (982)
++ ..++..+.. ......+..+++|++|+|++|+|+.+|..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|
T Consensus 161 ~~~~~~p~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n 239 (328)
T 4fcg_A 161 PELTELPEPLAS-TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239 (328)
T ss_dssp TTCCCCCSCSEE-EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTC
T ss_pred CCccccChhHhh-ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCC
Confidence 22 222211100 00001112356777777777777777777777777777777777777764 5667777777777776
Q ss_pred CCCC-ccccccccccceeecccCCcCCC-cc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 002014 224 NLRS-IAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (982)
Q Consensus 224 ~Ls~-L~~l~~~L~sL~~L~Ls~N~Ls~-L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~ 297 (982)
.+.+ ++..+..+++|+.|+|++|.+.. +| .+..+++|+.|+|++|.+.+..+ ..+..+++|+.+.+..|.+..
T Consensus 240 ~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP-~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC-GGGGGSCTTCEEECCGGGSCC
T ss_pred cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc-HHHhhccCceEEeCCHHHHHH
Confidence 6554 33345556677777777765544 33 56667777777777765443222 556677777777776665543
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=7.5e-21 Score=210.47 Aligned_cols=224 Identities=15% Similarity=0.075 Sum_probs=191.4
Q ss_pred CCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCC
Q 002014 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (982)
Q Consensus 85 ~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l 164 (982)
..++|+.|+|++|.+. .+|..+..+++|++|+|++|.|+ .+|..+..+++|..+.+.+|.+..++..+.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~--------- 147 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIA--------- 147 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGG---------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHh---------
Confidence 4689999999999998 67778889999999999999998 688899999999999999998886654322
Q ss_pred CCCCCccEEEccCCccc-cchhhcCC---------CCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCcccccc
Q 002014 165 PQWNRLSFVSCSCNRLV-IMDESLQL---------LPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSE 233 (982)
Q Consensus 165 ~~L~~Lq~LdLS~N~Lt-~LP~sL~~---------L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~ 233 (982)
.+++|++|++++|++. .+|..+.. +++|++|+|++|.|+.++ .+..+++|+.|+|++|.++.+++.+.
T Consensus 148 -~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~ 226 (328)
T 4fcg_A 148 -SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226 (328)
T ss_dssp -GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGG
T ss_pred -cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhc
Confidence 4679999999996554 78776554 999999999999999886 78999999999999999999988777
Q ss_pred ccccceeecccCCcCCCc-c-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCC
Q 002014 234 VSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH 311 (982)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L-~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~ 311 (982)
.+++|+.|+|++|.+... + .+..+++|+.|+|++|.+....+ ..+..+++|+.|+|++|++.... +..+..++.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~i---P~~l~~L~~ 302 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP-LDIHRLTQLEKLDLRGCVNLSRL---PSLIAQLPA 302 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC-TTGGGCTTCCEEECTTCTTCCCC---CGGGGGSCT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc-hhhhcCCCCCEEeCCCCCchhhc---cHHHhhccC
Confidence 889999999999987763 4 78999999999999987665433 56889999999999999987652 245778899
Q ss_pred CceeecCCCccCh
Q 002014 312 PAKLKVDGKEIST 324 (982)
Q Consensus 312 L~lL~LdgN~Is~ 324 (982)
++.+.+..+.+..
T Consensus 303 L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 303 NCIILVPPHLQAQ 315 (328)
T ss_dssp TCEEECCGGGSCC
T ss_pred ceEEeCCHHHHHH
Confidence 9999998877754
No 57
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.84 E-value=2.7e-20 Score=199.48 Aligned_cols=196 Identities=21% Similarity=0.262 Sum_probs=155.1
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCC
Q 002014 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (982)
Q Consensus 68 LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L 147 (982)
++++++. ++.+|..+ .++|+.|+|++|.+....+..|..+++|++|+|++|.|+...+..|.
T Consensus 21 l~~~~~~-l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~--------------- 82 (270)
T 2o6q_A 21 VDCSSKK-LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFK--------------- 82 (270)
T ss_dssp EECTTSC-CSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTS---------------
T ss_pred EEccCCC-CCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhc---------------
Confidence 4455443 33455433 25788888888888877777888888888888888888753332221
Q ss_pred ccchhhcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCC
Q 002014 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNN 224 (982)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~ 224 (982)
.+++|++|++++|.++.+|. .+..+++|++|+|++|.++.++ .|..+++|+.|+|++|.
T Consensus 83 ------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 144 (270)
T 2o6q_A 83 ------------------ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144 (270)
T ss_dssp ------------------SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc
Confidence 34578999999999997775 5688899999999999999875 47889999999999999
Q ss_pred CCCcccc-ccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 225 LRSIAAF-SEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 225 Ls~L~~l-~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
|+.++.. +..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++||+.|.|.
T Consensus 145 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE-GAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH-HHhccccCCCEEEecCCCeeCCCc
Confidence 9988763 566789999999999999875 47889999999999999998875 567889999999999999998874
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=7.6e-22 Score=230.26 Aligned_cols=236 Identities=17% Similarity=0.180 Sum_probs=193.2
Q ss_pred EEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCC
Q 002014 31 LKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPF 110 (982)
Q Consensus 31 L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L 110 (982)
..+.......+|..+..+.. ..-.+..++|++|......|..|..+++|++|+|++|.+++..| |..+
T Consensus 12 ~~~~~~~~~~l~~~l~~l~~----------~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l 79 (487)
T 3oja_A 12 YKIEKVTDSSLKQALASLRQ----------SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL 79 (487)
T ss_dssp EEEESCCTTTHHHHHHTTST----------TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTC
T ss_pred eecccCchhhhHHHHHHhcc----------cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccC
Confidence 44555556667766655531 11134557888887766667889999999999999999987666 8999
Q ss_pred CCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccc-hhhcCC
Q 002014 111 CRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQL 189 (982)
Q Consensus 111 ~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~L-P~sL~~ 189 (982)
++|++|+|++|.|++..+. ++|..+.+.+|.+..++.. .+++|+.|+|++|.|+.+ |..+..
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~-----~~L~~L~L~~N~l~~~~~~------------~l~~L~~L~L~~N~l~~~~~~~~~~ 142 (487)
T 3oja_A 80 STLRTLDLNNNYVQELLVG-----PSIETLHAANNNISRVSCS------------RGQGKKNIYLANNKITMLRDLDEGC 142 (487)
T ss_dssp TTCCEEECCSSEEEEEEEC-----TTCCEEECCSSCCCCEEEC------------CCSSCEEEECCSSCCCSGGGBCGGG
T ss_pred CCCCEEEecCCcCCCCCCC-----CCcCEEECcCCcCCCCCcc------------ccCCCCEEECCCCCCCCCCchhhcC
Confidence 9999999999999874432 6677788888877665432 356899999999999966 457889
Q ss_pred CCCCCEEEcCCCCCCCCC--CcC-CCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCc-ccCCCCCCCCEEEC
Q 002014 190 LPAVETLDLSRNKFAKVD--NLR-KCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTL-RGIENLKSLEGLDI 265 (982)
Q Consensus 190 L~~L~~LdLS~N~Lt~l~--~L~-~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L-~~L~~L~sL~~LdL 265 (982)
+++|+.|+|++|.|+.+. .+. .+++|+.|+|++|.|+++++.. .+++|+.|+|++|.|+.+ +.+..+++|+.|+|
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~L 221 (487)
T 3oja_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221 (487)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEECGGGGGGTTCSEEEC
T ss_pred CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccc-cCCCCCEEECCCCCCCCCCHhHcCCCCccEEEe
Confidence 999999999999999852 554 7899999999999999987654 479999999999999997 47889999999999
Q ss_pred cCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 266 SYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 266 S~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
++|.|+.+| ..+..+++|+.|++++|++.|.
T Consensus 222 s~N~l~~lp--~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 222 RNNKLVLIE--KALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp TTSCCCEEC--TTCCCCTTCCEEECTTCCBCHH
T ss_pred cCCcCcccc--hhhccCCCCCEEEcCCCCCcCc
Confidence 999999987 4588999999999999999865
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=3.4e-20 Score=199.45 Aligned_cols=233 Identities=16% Similarity=0.142 Sum_probs=195.2
Q ss_pred CcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCC
Q 002014 89 LKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWN 168 (982)
Q Consensus 89 Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~ 168 (982)
-+.++..++.++. +|..+ .++|++|+|++|.|++..+..|..++++..+.+.+|.+..+.... +..++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~---------~~~l~ 80 (285)
T 1ozn_A 13 KVTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA---------FTGLA 80 (285)
T ss_dssp SCEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT---------TTTCT
T ss_pred CeEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh---------cCCcc
Confidence 3688888888874 45444 479999999999999988888999999999999999876653321 23567
Q ss_pred CccEEEccCCc-cccc-hhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecc
Q 002014 169 RLSFVSCSCNR-LVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (982)
Q Consensus 169 ~Lq~LdLS~N~-Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~L 243 (982)
+|++|++++|. +..+ |..+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.++. .+..+++|+.|+|
T Consensus 81 ~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 81 LLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp TCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 99999999997 8877 568999999999999999999874 58899999999999999999886 3566899999999
Q ss_pred cCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCc
Q 002014 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (982)
Q Consensus 244 s~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~ 321 (982)
++|+|+.++ .+..+++|+.|+|++|.|+.+.+ ..+..+++|+.|+|++|.++..+ ...+..++.++.++|.+|+
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSSC
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCC---HHHcccCcccCEEeccCCC
Confidence 999999975 48999999999999999998754 67889999999999999998654 3557788999999999999
Q ss_pred cChHHHHHHHHHHHhh
Q 002014 322 ISTRELWERQLIIARR 337 (982)
Q Consensus 322 Is~~e~~~~~~l~~~~ 337 (982)
+.+.........+...
T Consensus 237 ~~c~~~~~~~~~~l~~ 252 (285)
T 1ozn_A 237 WVCDCRARPLWAWLQK 252 (285)
T ss_dssp EECSGGGHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHh
Confidence 9987655444333333
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.84 E-value=8.8e-21 Score=223.53 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=117.1
Q ss_pred CCCCCCccEEEccCCccccch---hhcCCCCCCCEEEcCCCCCCC-CC--CcCCCCCCCEEEcCCCCCCCcccccccc-c
Q 002014 164 SPQWNRLSFVSCSCNRLVIMD---ESLQLLPAVETLDLSRNKFAK-VD--NLRKCVNLKHLDLGFNNLRSIAAFSEVS-C 236 (982)
Q Consensus 164 l~~L~~Lq~LdLS~N~Lt~LP---~sL~~L~~L~~LdLS~N~Lt~-l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L-~ 236 (982)
+..+++|++|++++|+++.++ ..+..+++|+.|+|++|.++. ++ .+..+++|+.|+|++|.+++..+ ..+ +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~ 450 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF--RCLPP 450 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG--SSCCT
T ss_pred hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh--hhhcC
Confidence 356789999999999999654 568999999999999999998 65 58889999999999999975332 222 6
Q ss_pred cceeecccCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 237 HIVKLVLRNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 237 sL~~L~Ls~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
+|+.|+|++|+|+.+| .+..+++|+.|+|++|+|+.+|. ..+..+++|+.|+|++||+.|.|..
T Consensus 451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCT-TSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred cCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCH-HHHhcCCCCCEEEecCCCcCCCcch
Confidence 8999999999999986 57799999999999999999885 3488999999999999999999854
No 61
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=228.68 Aligned_cols=271 Identities=17% Similarity=0.193 Sum_probs=198.7
Q ss_pred cchhcCCcEEEecCC-Cccch-HhhhhcccccccccCC-CCcc---------ccccccccCCCCCCchhhHHH--hcCCC
Q 002014 22 GPLIEGSIVLKLNPA-GLHYV-QSRLEALRELERLLAG-APLD---------YLRAYVSDLGDHRALEQLRRI--LKLLT 87 (982)
Q Consensus 22 ~~lL~sl~~L~L~~~-~L~~L-p~~L~~L~~Le~L~~~-~~~~---------~l~l~~LdLs~n~~L~~Lp~~--L~~L~ 87 (982)
..-+.+++.|+++.+ .+..+ |..+.++++|+.|... +... ...+..++|++|...+.+|.. +..++
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~ 123 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccC
Confidence 344667778888877 44455 5667777777776653 1111 223456788888776656654 89999
Q ss_pred CCcEEEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCccchhhHHhh--hhhhHhhhccCCCccchh------------
Q 002014 88 SLKVVSALPPPARDPTP-LSLLPFCRLKVLELRGCDLSTSAAKGLLEL--RHTLEKIICHNSTNALRH------------ 152 (982)
Q Consensus 88 ~Lk~L~Ls~N~L~~~iP-~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L--~~LLeLLL~~N~L~~L~~------------ 152 (982)
+|++|+|++|.+.+..+ ..|+++++|++|+|++|.+++..+..+..+ ++|..+.+..|.+.....
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~ 203 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN 203 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcccc
Confidence 99999999999987765 579999999999999999999888888877 556666666654432110
Q ss_pred -----h--------------cccch------------------------hcc--cCCC--CCCCccEEEccCCccccc-h
Q 002014 153 -----V--------------FASRI------------------------VEI--KDSP--QWNRLSFVSCSCNRLVIM-D 184 (982)
Q Consensus 153 -----l--------------~~~~l------------------------~~L--~~l~--~L~~Lq~LdLS~N~Lt~L-P 184 (982)
+ +...+ ..+ ..+. ..++|+.|++++|.+..+ |
T Consensus 204 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~ 283 (844)
T 3j0a_A 204 MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283 (844)
T ss_dssp CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS
T ss_pred CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh
Confidence 0 00000 000 0011 126799999999999855 4
Q ss_pred hhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCC
Q 002014 185 ESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKS 259 (982)
Q Consensus 185 ~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~s 259 (982)
..|..+++|+.|+|++|.++.++ .|..+++|+.|+|++|.++.+.+ .+..+++|+.|+|++|.|+.++ .+..+++
T Consensus 284 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~ 363 (844)
T 3j0a_A 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363 (844)
T ss_dssp CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC
T ss_pred hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC
Confidence 57888999999999999998863 68889999999999999988754 5667889999999999998874 5888999
Q ss_pred CCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 260 LEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 260 L~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
|+.|+|++|.|+.++. +++|+.|++++|++...
T Consensus 364 L~~L~Ls~N~l~~i~~------~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 364 LQTLDLRDNALTTIHF------IPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp CCEEEEETCCSCCCSS------CCSCSEEEEESCCCCCC
T ss_pred CCEEECCCCCCCcccC------CCCcchhccCCCCcccc
Confidence 9999999999987652 66777777777777644
No 62
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=1.3e-19 Score=209.87 Aligned_cols=215 Identities=18% Similarity=0.238 Sum_probs=120.1
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP 104 (982)
+..++.|+++.+.+..+| .+..+++|+.|.. ++|. +..+| ++.+++|++|+|++|.+++. |
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L--------------s~n~-l~~~~--~~~l~~L~~L~Ls~N~l~~~-~ 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLIC--------------TSNN-ITTLD--LSQNTNLTYLACDSNKLTNL-D 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEEC--------------CSSC-CSCCC--CTTCTTCSEEECCSSCCSCC-C
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEc--------------cCCc-CCeEc--cccCCCCCEEECcCCCCcee-e
Confidence 678899999999999987 5777777776553 3332 11122 44455555555555555543 1
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhccc-----------chhcccCCCCCCCccEE
Q 002014 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFAS-----------RIVEIKDSPQWNRLSFV 173 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~-----------~l~~L~~l~~L~~Lq~L 173 (982)
+..+++|++|+|++|.+++. | +..+++|..+.+.+|.+..++-.... .+..+ .+..+++|++|
T Consensus 102 --~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L 175 (457)
T 3bz5_A 102 --VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTL 175 (457)
T ss_dssp --CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEE
T ss_pred --cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc-ccccCCcCCEE
Confidence 44555555555555555542 2 44444545555555544333100000 01111 13345667777
Q ss_pred EccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCccc
Q 002014 174 SCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRG 253 (982)
Q Consensus 174 dLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~ 253 (982)
++++|+|+.+| +..+++|+.|++++|.++.+ .+..+++|+.|+|++|++++++ ...+++|+.|+|++|+|+.++
T Consensus 176 ~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 176 DCSFNKITELD--VSQNKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp ECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred ECCCCccceec--cccCCCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC-
Confidence 77777777665 56666677777777766666 3666666667777776666654 344566666666666666653
Q ss_pred CCCCCCCCEEECcCCCC
Q 002014 254 IENLKSLEGLDISYNII 270 (982)
Q Consensus 254 L~~L~sL~~LdLS~N~L 270 (982)
+..+++|+.|+++.|.+
T Consensus 250 ~~~l~~L~~L~l~~n~L 266 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQTDL 266 (457)
T ss_dssp CTTCTTCCEEECTTCCC
T ss_pred HHHCCCCCEEeccCCCC
Confidence 33344444444333333
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=1.6e-20 Score=205.87 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=151.3
Q ss_pred CCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCC
Q 002014 85 LLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDS 164 (982)
Q Consensus 85 ~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l 164 (982)
.+++|+.|++.+|.+... | .+..+++|++|+|++|.+++..+ +..+++|..+.+.+|.+..++. +
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-----------~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA-----------I 103 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCGG-----------G
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCchh-----------h
Confidence 356666666666666542 3 46666667777776666665333 5566666666666665444321 1
Q ss_pred CCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeeccc
Q 002014 165 PQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (982)
Q Consensus 165 ~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (982)
..+++|++|++++|+++.++. +..+++|++|+|++|.++.++.+..+++|+.|+|++|.++.+++ +..+++|+.|+|+
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECC
Confidence 246689999999999998865 88899999999999999988888889999999999999998877 5567899999999
Q ss_pred CCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 245 NNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 245 ~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
+|.|+.++.+..+++|+.|+|++|.|+++++ +..+++|+.|+|++|++++.+
T Consensus 182 ~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 182 DNKISDISPLASLPNLIEVHLKNNQISDVSP---LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp SSCCCCCGGGGGCTTCCEEECTTSCCCBCGG---GTTCTTCCEEEEEEEEEECCC
T ss_pred CCccCcChhhcCCCCCCEEEccCCccCcccc---ccCCCCCCEEEccCCeeecCC
Confidence 9999998878889999999999999998763 788999999999999998765
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.7e-19 Score=216.98 Aligned_cols=256 Identities=20% Similarity=0.199 Sum_probs=168.8
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP 104 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP 104 (982)
..+.+.|+++.+.|..+|..+. ++|+.| ++++|. +..+|. .+++|++|+|++|.|+. +|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~--~~L~~L--------------~L~~N~-l~~lp~---~l~~L~~L~Ls~N~l~~-lp 97 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP--AHITTL--------------VIPDNN-LTSLPA---LPPELRTLEVSGNQLTS-LP 97 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC--TTCSEE--------------EECSCC-CSCCCC---CCTTCCEEEECSCCCSC-CC
T ss_pred CCCCcEEEecCCCcCccChhhC--CCCcEE--------------EecCCC-CCCCCC---cCCCCCEEEcCCCcCCc-CC
Confidence 3457899999999999887554 334433 333332 223333 34555555555555543 22
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcc---------cchhcccCCCCCCCccEEEc
Q 002014 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVSC 175 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~---------~~l~~L~~l~~L~~Lq~LdL 175 (982)
. .+++|++|+|++|.|++ +|. .+.+|..+.+.+|.+..++.... +.+..++ ..+++|+.|++
T Consensus 98 ~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L 168 (622)
T 3g06_A 98 V---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLP--ALPSELCKLWA 168 (622)
T ss_dssp C---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEEC
T ss_pred C---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCCcC--CccCCCCEEEC
Confidence 2 34555555555555554 222 22333344444444443332110 0001111 12346777777
Q ss_pred cCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCC
Q 002014 176 SCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIE 255 (982)
Q Consensus 176 S~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~ 255 (982)
++|.|+.+| ..+++|+.|+|++|.|+.++.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ .
T Consensus 169 ~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp--~ 238 (622)
T 3g06_A 169 YNNQLTSLP---MLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLP--V 238 (622)
T ss_dssp CSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC--C
T ss_pred CCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCC--C
Confidence 777777776 4467888888888888887643 47888888888888877753 378999999999999987 5
Q ss_pred CCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHH
Q 002014 256 NLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWE 329 (982)
Q Consensus 256 ~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~ 329 (982)
.+++|+.|+|++|.|+.+|. .+++|+.|+|++|.|+..+ ..+..++.|+.++|.+|+++......
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM-----LPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEECCSCCCCHHHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc-----ccccCcEEeCCCCCCCcCC----HHHhhccccCEEEecCCCCCCcCHHH
Confidence 67899999999999999873 6789999999999998554 34678899999999999999765543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.82 E-value=5.5e-22 Score=217.22 Aligned_cols=200 Identities=20% Similarity=0.134 Sum_probs=151.5
Q ss_pred CcEEEccCCCCC-CCCCcCCC-------CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhc
Q 002014 89 LKVVSALPPPAR-DPTPLSLL-------PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (982)
Q Consensus 89 Lk~L~Ls~N~L~-~~iP~sf~-------~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~ 160 (982)
|+.|+|++|.+. ..+|..+. ++++|++|+|++|.+++..|..+.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------------------------- 116 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL---------------------------- 116 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS----------------------------
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH----------------------------
Confidence 566666666653 33443333 456666666666666654443220
Q ss_pred ccCCCCCCCccEEEccCCccccchhhcCCC-----CCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCc---cc
Q 002014 161 IKDSPQWNRLSFVSCSCNRLVIMDESLQLL-----PAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI---AA 230 (982)
Q Consensus 161 L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L-----~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L---~~ 230 (982)
+..+++|++|+|++|+++.+|..+..+ ++|++|+|++|+|+.++ .+..+++|+.|+|++|.+.+. +.
T Consensus 117 ---~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 117 ---EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp ---SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred ---HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 024568999999999999878777766 89999999999999875 789999999999999997653 22
Q ss_pred cc--cccccceeecccCCcCCCcc-----cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccch
Q 002014 231 FS--EVSCHIVKLVLRNNALTTLR-----GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRA 303 (982)
Q Consensus 231 l~--~~L~sL~~L~Ls~N~Ls~L~-----~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~ 303 (982)
.. ..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.|++.++...+..+++|+.|+|++|.|+..+.
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~--- 270 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK--- 270 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS---
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh---
Confidence 22 56799999999999999653 335789999999999999997644556778999999999999985542
Q ss_pred hHhhhcCCCceeecCCCccChH
Q 002014 304 QVFSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 304 ~v~~~l~~L~lL~LdgN~Is~~ 325 (982)
..+ +.++.++|.+|.++..
T Consensus 271 ~~~---~~L~~L~Ls~N~l~~~ 289 (312)
T 1wwl_A 271 GLP---AKLSVLDLSYNRLDRN 289 (312)
T ss_dssp SCC---SEEEEEECCSSCCCSC
T ss_pred hcc---CCceEEECCCCCCCCC
Confidence 111 6799999999999854
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.82 E-value=3.2e-20 Score=214.87 Aligned_cols=259 Identities=17% Similarity=0.113 Sum_probs=153.1
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCC-------Ccccc----------------ccccccCCCCCCchhhHH
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGA-------PLDYL----------------RAYVSDLGDHRALEQLRR 81 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~-------~~~~l----------------~l~~LdLs~n~~L~~Lp~ 81 (982)
...++.|.++.+.+..+|..+++|++|+.+.... |.... .+..+++++|. +..+|.
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp~ 88 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCCS
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCCC
Confidence 4567789999999999999999999888765410 10000 02345555554 333433
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcc
Q 002014 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (982)
Q Consensus 82 ~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L 161 (982)
. .++|++|+|++|.+++ +|.. +++|++|+|++|.+++ +|... +++..+.+.+|.+..++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~~---~~L~~L~L~~n~l~~lp---------- 147 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDLP---PLLEYLGVSNNQLEKLP---------- 147 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSCC---TTCCEEECCSSCCSSCC----------
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCCC---CCCCEEECcCCCCCCCc----------
Confidence 1 3566666666666665 4432 2566666666666665 22111 34455556666544433
Q ss_pred cCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceee
Q 002014 162 KDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKL 241 (982)
Q Consensus 162 ~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L 241 (982)
.+..+++|++|++++|+++.+|.. +++|++|++++|.++.++.+..+++|+.|++++|.+++++... ++|+.|
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L 220 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESI 220 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEE
T ss_pred -ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEE
Confidence 234567788888888888877654 3478888888888888777888888888888888888766543 578888
Q ss_pred cccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCc
Q 002014 242 VLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (982)
Q Consensus 242 ~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~ 321 (982)
++++|.++.++.+..+++|+.|++++|+++.++. .+++|+.|++++|.+...+. .++.++.+++.+|.
T Consensus 221 ~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~l~~l~~-------~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 221 VAGNNILEELPELQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNYLTDLPE-------LPQSLTFLDVSENI 288 (454)
T ss_dssp ECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSC
T ss_pred ECcCCcCCcccccCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCcccccCc-------ccCcCCEEECcCCc
Confidence 8888888887778888888888888888887763 24678888888888875442 13567888888887
Q ss_pred cCh
Q 002014 322 IST 324 (982)
Q Consensus 322 Is~ 324 (982)
++.
T Consensus 289 l~~ 291 (454)
T 1jl5_A 289 FSG 291 (454)
T ss_dssp CSE
T ss_pred cCc
Confidence 763
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=1.5e-19 Score=212.60 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=64.4
Q ss_pred ccceeecccCCcCCC-c--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCC
Q 002014 236 CHIVKLVLRNNALTT-L--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHP 312 (982)
Q Consensus 236 ~sL~~L~Ls~N~Ls~-L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L 312 (982)
+.|+.|+|++|.+.. + ..+..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.|
T Consensus 469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~-~~f~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~L 544 (635)
T 4g8a_A 469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSLD---TFPYKCLNSL 544 (635)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCCBCC---CGGGTTCTTC
T ss_pred hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcCh-HHHcCCCCCCEEECCCCcCCCCC---hhHHhCCCCC
Confidence 456666666665333 2 257788899999999999988765 66788999999999999887553 3456778889
Q ss_pred ceeecCCCccCh
Q 002014 313 AKLKVDGKEIST 324 (982)
Q Consensus 313 ~lL~LdgN~Is~ 324 (982)
+.|+|++|.++.
T Consensus 545 ~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 545 QVLDYSLNHIMT 556 (635)
T ss_dssp CEEECTTSCCCB
T ss_pred CEEECCCCcCCC
Confidence 999999998873
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.81 E-value=4.8e-19 Score=189.72 Aligned_cols=200 Identities=22% Similarity=0.260 Sum_probs=170.4
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCC
Q 002014 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (982)
..++.++++++.++. +|..+. ++|+.|+|++|.|++..+..|. .
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~---------------------------------~ 59 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFH---------------------------------R 59 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSS---------------------------------S
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhc---------------------------------C
Confidence 457899999999985 565553 6899999999999875443332 3
Q ss_pred CCCccEEEccCCccccchhh-cCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeec
Q 002014 167 WNRLSFVSCSCNRLVIMDES-LQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLV 242 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~s-L~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~ 242 (982)
+++|++|++++|.|+.+|.. |..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.+++ .+..+++|+.|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 45899999999999988874 688999999999999999976 67899999999999999999886 456789999999
Q ss_pred ccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCC
Q 002014 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (982)
Q Consensus 243 Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN 320 (982)
|++|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+++..+ ...+..++.++.+.|.+|
T Consensus 140 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVP---EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSS
T ss_pred CCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCC---HHHhccccCCCEEEecCC
Confidence 9999999985 48899999999999999999875 56789999999999999998654 345667889999999999
Q ss_pred ccChHH
Q 002014 321 EISTRE 326 (982)
Q Consensus 321 ~Is~~e 326 (982)
++.+..
T Consensus 216 ~~~c~c 221 (270)
T 2o6q_A 216 PWDCTC 221 (270)
T ss_dssp CBCCSS
T ss_pred CeeCCC
Confidence 998764
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=4.5e-20 Score=193.72 Aligned_cols=185 Identities=14% Similarity=0.199 Sum_probs=111.8
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-CCccchhhHHhhhhhhHhhhccCCCccchhhc
Q 002014 76 LEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LSTSAAKGLLELRHTLEKIICHNSTNALRHVF 154 (982)
Q Consensus 76 L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~-Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~ 154 (982)
++.+|. + .++|++|+|++|.+++..+..|.++++|++|+|++|. ++.+.+..|..++
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~------------------- 80 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLS------------------- 80 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCT-------------------
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCc-------------------
Confidence 666666 3 3489999999999998888889999999999999997 8876655555554
Q ss_pred ccchhcccCCCCCCCccEEEccC-Cccccchh-hcCCCCCCCEEEcCCCCCCCCCCcCCCCCCC---EEEcCCC-CCCCc
Q 002014 155 ASRIVEIKDSPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVDNLRKCVNLK---HLDLGFN-NLRSI 228 (982)
Q Consensus 155 ~~~l~~L~~l~~L~~Lq~LdLS~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~---~LdLS~N-~Ls~L 228 (982)
+|++|++++ |+|+.+|. .|..+++|++|++++|.++.++.+..+++|+ .|++++| .++.+
T Consensus 81 --------------~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i 146 (239)
T 2xwt_C 81 --------------KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146 (239)
T ss_dssp --------------TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred --------------CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhc
Confidence 455555555 55554442 4455555555555555555555455555555 5555555 55555
Q ss_pred cc-cccccccce-eecccCCcCCCcc--cCCCCCCCCEEECcCCC-CCCCchhhhhcCC-CCCcEEEecCCCCCCC
Q 002014 229 AA-FSEVSCHIV-KLVLRNNALTTLR--GIENLKSLEGLDISYNI-ISTFSELEFLASL-PYLLNLWLEGNPLCCS 298 (982)
Q Consensus 229 ~~-l~~~L~sL~-~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~L-p~L~~L~LsgNpLs~~ 298 (982)
++ .+..+++|+ .|+|++|+|+.++ .+.. ++|+.|+|++|+ |+.++. ..+..+ ++|+.|+|++|+++..
T Consensus 147 ~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~-~~~~~l~~~L~~L~l~~N~l~~l 220 (239)
T 2xwt_C 147 PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDK-DAFGGVYSGPSLLDVSQTSVTAL 220 (239)
T ss_dssp CTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECT-TTTTTCSBCCSEEECTTCCCCCC
T ss_pred CcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCH-HHhhccccCCcEEECCCCccccC
Confidence 43 233445555 5555555555543 2222 455555555553 555443 334455 5555555555555543
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.80 E-value=6.9e-19 Score=203.67 Aligned_cols=221 Identities=19% Similarity=0.152 Sum_probs=127.5
Q ss_pred cccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhcc
Q 002014 65 AYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (982)
Q Consensus 65 l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~ 144 (982)
+..+++++|... .+| .+..+++|++|+|++|.+++ +|..+ ++|++|+|++|.+++ +| .+..+++|..+.+.+
T Consensus 133 L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 133 LEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred CCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCC
Confidence 445566655433 355 36666666666666666664 33322 466666666666665 34 466666666666666
Q ss_pred CCCccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCC
Q 002014 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNN 224 (982)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~ 224 (982)
|.+..++.. .++|++|++++|.++.+| .+..+++|++|++++|+++.++.. +++|+.|++++|.
T Consensus 205 N~l~~l~~~-------------~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~ 268 (454)
T 1jl5_A 205 NSLKKLPDL-------------PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNY 268 (454)
T ss_dssp SCCSSCCCC-------------CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSC
T ss_pred CcCCcCCCC-------------cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCc
Confidence 655543321 135666666666666665 366666666666666666665432 2555666666665
Q ss_pred CCCccccccccccceeecccCCcCCCcccC-----------------CCC-CCCCEEECcCCCCCCCchhhhhcCCCCCc
Q 002014 225 LRSIAAFSEVSCHIVKLVLRNNALTTLRGI-----------------ENL-KSLEGLDISYNIISTFSELEFLASLPYLL 286 (982)
Q Consensus 225 Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L-----------------~~L-~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~ 286 (982)
+++++.. +++|+.|++++|.+++++.+ ..+ ++|+.|+|++|++++++. .+++|+
T Consensus 269 l~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~-----~~~~L~ 340 (454)
T 1jl5_A 269 LTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-----LPPRLE 340 (454)
T ss_dssp CSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC-----CCTTCC
T ss_pred ccccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccc-----cCCcCC
Confidence 5554432 13444444444444443211 112 467777777777776652 256777
Q ss_pred EEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 287 NLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 287 ~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
.|++++|.++..+. .++.++.++|.+|+++.
T Consensus 341 ~L~L~~N~l~~lp~-------~l~~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 341 RLIASFNHLAEVPE-------LPQNLKQLHVEYNPLRE 371 (454)
T ss_dssp EEECCSSCCSCCCC-------CCTTCCEEECCSSCCSS
T ss_pred EEECCCCccccccc-------hhhhccEEECCCCCCCc
Confidence 77777777765442 24667777777777763
No 71
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=6e-21 Score=214.32 Aligned_cols=46 Identities=15% Similarity=0.145 Sum_probs=26.4
Q ss_pred HHHhcCCCCCcEEEccCCCCC---CCCCcCC-------CCCCCccEEEeeCCCCCc
Q 002014 80 RRILKLLTSLKVVSALPPPAR---DPTPLSL-------LPFCRLKVLELRGCDLST 125 (982)
Q Consensus 80 p~~L~~L~~Lk~L~Ls~N~L~---~~iP~sf-------~~L~nL~~LdLS~N~Lss 125 (982)
+..+..+++|++|+|++|.+. +.+|..+ ..+++|++|+|++|.|+.
T Consensus 53 ~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 53 SENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred HHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 334556666667766664332 3334333 556666677776666665
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=9.8e-20 Score=194.94 Aligned_cols=198 Identities=19% Similarity=0.154 Sum_probs=168.0
Q ss_pred ccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC
Q 002014 66 YVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN 145 (982)
Q Consensus 66 ~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N 145 (982)
..+++++|...+..+..+.++++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..+..+..+++|..+.+.+|
T Consensus 31 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 110 (276)
T 2z62_A 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET 110 (276)
T ss_dssp CEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCC
Confidence 44677777655444457899999999999999999888889999999999999999999988889999999999999999
Q ss_pred CCccchhhcccchhcccCCCCCCCccEEEccCCcccc--chhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCC----E
Q 002014 146 STNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI--MDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLK----H 217 (982)
Q Consensus 146 ~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~--LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~----~ 217 (982)
.+..+.... +..+++|++|++++|.++. +|..+..+++|++|+|++|+++.++ .+..+++|+ .
T Consensus 111 ~l~~~~~~~---------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 111 NLASLENFP---------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CCCCSTTCC---------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred CccccCchh---------cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence 877665432 2357799999999999996 6889999999999999999999864 455555555 8
Q ss_pred EEcCCCCCCCccccccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCC
Q 002014 218 LDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIIST 272 (982)
Q Consensus 218 LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~ 272 (982)
|+|++|.++.+++......+|+.|+|++|.|+.++ .+..+++|+.|+|++|.+..
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred eecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99999999998875555568999999999999985 47889999999999999885
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.80 E-value=1e-18 Score=202.34 Aligned_cols=220 Identities=20% Similarity=0.188 Sum_probs=180.1
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCC
Q 002014 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (982)
Q Consensus 68 LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L 147 (982)
+++++|.. ..+| .+..+++|++|+|++|.+++. | +..+++|++|+|++|.|++. + +..+++|..+.+.+|.+
T Consensus 47 L~Ls~n~l-~~~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l 118 (457)
T 3bz5_A 47 LDCHNSSI-TDMT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKL 118 (457)
T ss_dssp EECCSSCC-CCCT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCC
T ss_pred EEccCCCc-ccCh-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcC
Confidence 55666643 3355 588999999999999999875 3 88999999999999999884 3 78888888899999877
Q ss_pred ccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCC-CCCCCCcCCCCCCCEEEcCCCCCC
Q 002014 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNK-FAKVDNLRKCVNLKHLDLGFNNLR 226 (982)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~-Lt~l~~L~~L~sL~~LdLS~N~Ls 226 (982)
..++ +..+++|++|++++|+|+.++ +..+++|++|++++|. +..+ .+..+++|+.|+|++|.++
T Consensus 119 ~~l~------------~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 119 TKLD------------VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp SCCC------------CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCC
T ss_pred Ceec------------CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccc
Confidence 6552 235679999999999999874 7889999999999994 4445 6788899999999999999
Q ss_pred CccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHh
Q 002014 227 SIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (982)
Q Consensus 227 ~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~ 306 (982)
.++ ...+++|+.|++++|.|+.++ +..+++|+.|+|++|+|+++| +..+++|+.|++++|+++..+ +
T Consensus 184 ~l~--l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip----~~~l~~L~~L~l~~N~l~~~~------~ 250 (457)
T 3bz5_A 184 ELD--VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSVNPLTELD------V 250 (457)
T ss_dssp CCC--CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC------C
T ss_pred eec--cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccC----ccccCCCCEEEeeCCcCCCcC------H
Confidence 986 556789999999999999884 888999999999999999975 678899999999999998654 2
Q ss_pred hhcCCCceeecCCCccC
Q 002014 307 SYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 307 ~~l~~L~lL~LdgN~Is 323 (982)
..++.++.+.+.+|.+.
T Consensus 251 ~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLL 267 (457)
T ss_dssp TTCTTCCEEECTTCCCS
T ss_pred HHCCCCCEEeccCCCCC
Confidence 34566777777766554
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.3e-18 Score=189.33 Aligned_cols=204 Identities=20% Similarity=0.164 Sum_probs=170.9
Q ss_pred CCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchh
Q 002014 106 SLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE 185 (982)
Q Consensus 106 sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~ 185 (982)
.+.++++|+.|++++|.|+. +|..+. +.+..+.+.+|.+..+....+ ..+++|++|+|++|.|+.++.
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~---------~~l~~L~~L~L~~n~l~~~~~ 72 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATL---------MPYTRLTQLNLDRAELTKLQV 72 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGG---------TTCTTCCEEECTTSCCCEEEC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHh---------hcCCCCCEEECCCCccCcccC
Confidence 46788999999999999987 454443 455677888888766643222 256799999999999998876
Q ss_pred hcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCCC
Q 002014 186 SLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLE 261 (982)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~ 261 (982)
. ..+++|++|+|++|.|+.++ .+..+++|+.|+|++|+|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+
T Consensus 73 ~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 73 D-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp C-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred C-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 4 78999999999999999987 57889999999999999999885 5667899999999999999985 478999999
Q ss_pred EEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHH
Q 002014 262 GLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (982)
Q Consensus 262 ~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~ 327 (982)
.|+|++|+|+.++. ..+..+++|+.|+|++|+|+..+. .+..+..++.+.|.+|++.|...
T Consensus 152 ~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 152 KLSLANNNLTELPA-GLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp EEECTTSCCSCCCT-TTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSCCBCCSGG
T ss_pred EEECCCCcCCccCH-HHhcCcCCCCEEECCCCcCCccCh----hhcccccCCeEEeCCCCccCcCc
Confidence 99999999999985 567889999999999999986652 23345689999999999988653
No 75
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.78 E-value=7.7e-19 Score=211.31 Aligned_cols=232 Identities=21% Similarity=0.171 Sum_probs=163.5
Q ss_pred hhcCCcEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCC
Q 002014 24 LIEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPT 103 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~i 103 (982)
+..+++.|+++.|.+..||.. +++|+. ++|++|. +..+|. .+++|++|+|++|.+++..
T Consensus 59 l~~~L~~L~L~~N~l~~lp~~---l~~L~~--------------L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~l~~l~ 117 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPAL---PPELRT--------------LEVSGNQ-LTSLPV---LPPGLLELSIFSNPLTHLP 117 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCCC---CTTCCE--------------EEECSCC-CSCCCC---CCTTCCEEEECSCCCCCCC
T ss_pred hCCCCcEEEecCCCCCCCCCc---CCCCCE--------------EEcCCCc-CCcCCC---CCCCCCEEECcCCcCCCCC
Confidence 346789999999999998873 333333 3344443 223433 4556666666666555432
Q ss_pred CcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcc---------cchhcccCCCCCCCccEEE
Q 002014 104 PLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFA---------SRIVEIKDSPQWNRLSFVS 174 (982)
Q Consensus 104 P~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~---------~~l~~L~~l~~L~~Lq~Ld 174 (982)
+ .+++|+.|+|++|+|+. +|.. +++|..+.+.+|.+..++.... +.++.++ ..+++|+.|+
T Consensus 118 ~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~ 187 (622)
T 3g06_A 118 A----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP--MLPSGLQELS 187 (622)
T ss_dssp C----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC--CCCTTCCEEE
T ss_pred C----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc--ccCCCCcEEE
Confidence 2 34555555555555554 3322 2344445555555544432111 0111111 2357899999
Q ss_pred ccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccC
Q 002014 175 CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGI 254 (982)
Q Consensus 175 LS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L 254 (982)
+++|.|+.+|.. +++|+.|++++|.|+.++.. +++|+.|+|++|.|+.++ ..+++|+.|+|++|.|+.++.
T Consensus 188 Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~- 258 (622)
T 3g06_A 188 VSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM- 258 (622)
T ss_dssp CCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-
T ss_pred CCCCCCCCCCCc---cchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-
Confidence 999999988753 57899999999999998753 589999999999999987 345899999999999999986
Q ss_pred CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 255 ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 255 ~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
.+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|+++..
T Consensus 259 -~~~~L~~L~Ls~N~L~~lp--~~l~~l~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLTRLP--ESLIHLSSETTVNLEGNPLSER 299 (622)
T ss_dssp -CCTTCCEEECCSSCCCSCC--GGGGGSCTTCEEECCSCCCCHH
T ss_pred -ccccCcEEeCCCCCCCcCC--HHHhhccccCEEEecCCCCCCc
Confidence 7899999999999999987 5689999999999999999854
No 76
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=197.10 Aligned_cols=202 Identities=20% Similarity=0.165 Sum_probs=158.3
Q ss_pred CCCCCcEEEccCCCCCCCCCcCC--CCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhccc
Q 002014 85 LLTSLKVVSALPPPARDPTPLSL--LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (982)
Q Consensus 85 ~L~~Lk~L~Ls~N~L~~~iP~sf--~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~ 162 (982)
.+++|++|+|++|.+.+..|..+ ..+++|++|+|++|.+++..+. +....
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~-~~~~~--------------------------- 140 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSW-LAELQ--------------------------- 140 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSS-HHHHH---------------------------
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhh-hHHHH---------------------------
Confidence 45779999999999999999888 8999999999999999874331 11100
Q ss_pred CCCCCCCccEEEccCCccccch-hhcCCCCCCCEEEcCCCCCCC---CC---CcCCCCCCCEEEcCCCCCCCccc----c
Q 002014 163 DSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAK---VD---NLRKCVNLKHLDLGFNNLRSIAA----F 231 (982)
Q Consensus 163 ~l~~L~~Lq~LdLS~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~---l~---~L~~L~sL~~LdLS~N~Ls~L~~----l 231 (982)
+..+++|++|+|++|.+..++ ..+..+++|++|+|++|++.. ++ .+..+++|+.|+|++|.++.++. +
T Consensus 141 -~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 141 -QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp -TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred -hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 012568999999999998665 578889999999999998765 21 34678899999999999987765 2
Q ss_pred ccccccceeecccCCcCCCc-c-cCCCC---CCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHh
Q 002014 232 SEVSCHIVKLVLRNNALTTL-R-GIENL---KSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVF 306 (982)
Q Consensus 232 ~~~L~sL~~L~Ls~N~Ls~L-~-~L~~L---~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~ 306 (982)
+..+++|+.|+|++|+|+.+ | .+..+ ++|++|+|++|+|+.+|. .+ .++|+.|+|++|+|+..+. +
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~--~~~L~~L~Ls~N~l~~~~~-----~ 290 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK--GL--PAKLRVLDLSSNRLNRAPQ-----P 290 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS--CC--CSCCSCEECCSCCCCSCCC-----T
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh--hh--cCCCCEEECCCCcCCCCch-----h
Confidence 44568999999999999886 3 45554 699999999999998873 33 3789999999999986532 3
Q ss_pred hhcCCCceeecCCCccCh
Q 002014 307 SYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 307 ~~l~~L~lL~LdgN~Is~ 324 (982)
..++.++.++|++|+++.
T Consensus 291 ~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 291 DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TSCCCCSCEECSSTTTSC
T ss_pred hhCCCccEEECcCCCCCC
Confidence 567889999999999874
No 77
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=8.6e-19 Score=190.76 Aligned_cols=198 Identities=20% Similarity=0.212 Sum_probs=163.3
Q ss_pred cCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccC
Q 002014 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKD 163 (982)
Q Consensus 84 ~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~ 163 (982)
..+++|+.|++++|.+... + .+..+++|++|+|++|.+++..+ +.
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~------------------------------- 87 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LA------------------------------- 87 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GT-------------------------------
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cc-------------------------------
Confidence 4588999999999999865 3 48889999999999999987433 22
Q ss_pred CCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecc
Q 002014 164 SPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (982)
Q Consensus 164 l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (982)
.+++|++|++++|.++.+|. +..+++|++|+|++|.++.++.+..+++|+.|+|++|.++.++ .+..+++|+.|+|
T Consensus 88 --~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 163 (291)
T 1h6t_A 88 --NLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSL 163 (291)
T ss_dssp --TCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEEC
T ss_pred --cCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcch-hhccCCCCCEEEc
Confidence 24589999999999998764 8899999999999999999988999999999999999999984 4556799999999
Q ss_pred cCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 244 s~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
++|.|+.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|++++|+++..+......+... .....+++..++
T Consensus 164 ~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~~--~~l~~l~~~~i~ 238 (291)
T 1h6t_A 164 EDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPINHQSNLVVP--NTVKNTDGSLVT 238 (291)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCEECCSEEEEE--CCCBCTTSCBCC
T ss_pred cCCccccchhhcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCccccccccEEc--ceEECCCCCCcC
Confidence 9999999877999999999999999999986 37899999999999999987654332222222 234456777665
Q ss_pred hH
Q 002014 324 TR 325 (982)
Q Consensus 324 ~~ 325 (982)
..
T Consensus 239 ~~ 240 (291)
T 1h6t_A 239 PE 240 (291)
T ss_dssp EE
T ss_pred CC
Confidence 43
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=1.4e-18 Score=190.45 Aligned_cols=207 Identities=22% Similarity=0.256 Sum_probs=179.1
Q ss_pred EccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccE
Q 002014 93 SALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSF 172 (982)
Q Consensus 93 ~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~ 172 (982)
.+..+.+.+.+ .+..+++|++|++++|.++. ++ .+..+++|..+.+.+|.+..++. +..+++|++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~-----------~~~l~~L~~ 89 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP-----------LKNLTKITE 89 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG-----------GTTCCSCCE
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh-----------HccCCCCCE
Confidence 34455555433 34568999999999999987 44 68889999999999998776654 235779999
Q ss_pred EEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc
Q 002014 173 VSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR 252 (982)
Q Consensus 173 LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~ 252 (982)
|++++|.++.++ .+..+++|++|+|++|.++.++.+..+++|+.|+|++|.++.+++ +..+++|+.|+|++|.++.++
T Consensus 90 L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 90 LELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp EECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred EEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh
Confidence 999999999886 688999999999999999999889999999999999999999887 556799999999999999998
Q ss_pred cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 253 GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 253 ~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
.+..+++|+.|+|++|.|+.+++ +..+++|+.|+|++|++...+. +..++.|+.++|.+|+++.
T Consensus 168 ~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 PLANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEEEEEEEC
T ss_pred hhcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEEccCCeeec
Confidence 89999999999999999999874 7889999999999999986642 5678999999999999974
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.77 E-value=5.3e-18 Score=179.68 Aligned_cols=177 Identities=22% Similarity=0.294 Sum_probs=134.8
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCC
Q 002014 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (982)
...+.++++++.+. .+|..+. ++|+.|+|++|.|++..+..|..
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~--------------------------------- 57 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRG--------------------------------- 57 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTT---------------------------------
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcC---------------------------------
Confidence 35667777777776 3444443 57788888888877655433322
Q ss_pred CCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcccc-ccccccceeec
Q 002014 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLV 242 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l-~~~L~sL~~L~ 242 (982)
+++|++|+|++|.|+.++. .|..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++. +..+++|+.|+
T Consensus 58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 137 (251)
T 3m19_A 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEE
Confidence 3467778888887775544 5677888888888888888765 567788888888888888877763 45578888888
Q ss_pred ccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC-cc
Q 002014 243 LRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-RW 300 (982)
Q Consensus 243 Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~-~~ 300 (982)
|++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|. +.
T Consensus 138 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCceeCCccc
Confidence 8888888875 58889999999999999999875 5688999999999999999988 53
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=5.1e-18 Score=182.16 Aligned_cols=179 Identities=22% Similarity=0.321 Sum_probs=153.3
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhccc
Q 002014 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (982)
Q Consensus 83 L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~ 162 (982)
+..+++|+.|++.+|.+... ..+..+++|++|+|++|.+++. + .+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~-~l~------------------------------ 82 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI-S-ALK------------------------------ 82 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC-G-GGT------------------------------
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc-h-hhc------------------------------
Confidence 34589999999999998743 3588899999999999999762 2 221
Q ss_pred CCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcccc-ccccccc
Q 002014 163 DSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHI 238 (982)
Q Consensus 163 ~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l-~~~L~sL 238 (982)
.+++|++|++++|.++.++. .+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.+++. +..+++|
T Consensus 83 ---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 159 (272)
T 3rfs_A 83 ---ELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159 (272)
T ss_dssp ---TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ---CCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccC
Confidence 35689999999999997766 5789999999999999999876 488999999999999999988863 4668999
Q ss_pred eeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 239 VKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 239 ~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
+.|+|++|+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|++.|.+
T Consensus 160 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 221 (272)
T 3rfs_A 160 TELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 221 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCT
T ss_pred CEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH-HHHhCCcCCCEEEccCCCccccC
Confidence 99999999999985 37899999999999999999875 56789999999999999998875
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=5.1e-19 Score=193.24 Aligned_cols=196 Identities=19% Similarity=0.145 Sum_probs=149.9
Q ss_pred cccccCCCCCCchhhHHHh--cCCCCCcEEEccCCCCCCCCC----cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhh
Q 002014 65 AYVSDLGDHRALEQLRRIL--KLLTSLKVVSALPPPARDPTP----LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTL 138 (982)
Q Consensus 65 l~~LdLs~n~~L~~Lp~~L--~~L~~Lk~L~Ls~N~L~~~iP----~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LL 138 (982)
+..+++++|...+.+|..+ ..+++|++|+|++|.+.+..| ..+..+++|++|+|++|.|++..|..+..
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~----- 167 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA----- 167 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC-----
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc-----
Confidence 4557788888777777777 889999999999999997655 44567899999999999998766554433
Q ss_pred HhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCcccc---chh--hcCCCCCCCEEEcCCCCCCCCCC-----
Q 002014 139 EKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI---MDE--SLQLLPAVETLDLSRNKFAKVDN----- 208 (982)
Q Consensus 139 eLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~---LP~--sL~~L~~L~~LdLS~N~Lt~l~~----- 208 (982)
+++|++|+|++|++.. ++. .+..+++|++|+|++|+++.++.
T Consensus 168 ----------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l 219 (310)
T 4glp_A 168 ----------------------------FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL 219 (310)
T ss_dssp ----------------------------CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH
T ss_pred ----------------------------CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH
Confidence 4478888888888753 332 23678888888888888877642
Q ss_pred cCCCCCCCEEEcCCCCCCCc-ccccccc---ccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCC
Q 002014 209 LRKCVNLKHLDLGFNNLRSI-AAFSEVS---CHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (982)
Q Consensus 209 L~~L~sL~~LdLS~N~Ls~L-~~l~~~L---~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~ 284 (982)
+..+++|+.|+|++|.|+.+ |.....+ ++|+.|+|++|+|+.+|... .++|+.|+|++|+|++++. +..+++
T Consensus 220 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~~~---~~~l~~ 295 (310)
T 4glp_A 220 AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRAPQ---PDELPE 295 (310)
T ss_dssp HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSCCC---TTSCCC
T ss_pred HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCCch---hhhCCC
Confidence 45678888888888888876 4333333 68888899988888876322 3789999999999998763 577889
Q ss_pred CcEEEecCCCCCC
Q 002014 285 LLNLWLEGNPLCC 297 (982)
Q Consensus 285 L~~L~LsgNpLs~ 297 (982)
|+.|+|++|+|+.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999874
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=5e-19 Score=198.66 Aligned_cols=245 Identities=15% Similarity=0.136 Sum_probs=177.1
Q ss_pred chhhHHHhcCCCCCcEEEccCCCCCCCC----CcCCCCCCCccEEEeeCCCC---CccchhhH-------HhhhhhhHhh
Q 002014 76 LEQLRRILKLLTSLKVVSALPPPARDPT----PLSLLPFCRLKVLELRGCDL---STSAAKGL-------LELRHTLEKI 141 (982)
Q Consensus 76 L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~i----P~sf~~L~nL~~LdLS~N~L---ss~~p~~L-------~~L~~LLeLL 141 (982)
+..++..+..+++|++|+|++|.+.... +..|..+++|++|+|++|.+ ++.+|.++ ..+++|..+.
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 5567778889999999999999998653 34588899999999999744 44556665 5667777788
Q ss_pred hccCCCccchhh-cccchhcccCCCCCCCccEEEccCCccc-----cchhhcCCC---------CCCCEEEcCCCCCCC-
Q 002014 142 ICHNSTNALRHV-FASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLL---------PAVETLDLSRNKFAK- 205 (982)
Q Consensus 142 L~~N~L~~L~~l-~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-----~LP~sL~~L---------~~L~~LdLS~N~Lt~- 205 (982)
+.+|.+...... ++..+ ..+++|++|+|++|.|+ .++..+..+ ++|++|+|++|+|+.
T Consensus 101 Ls~n~l~~~~~~~l~~~l------~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFL------SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CCSCCCCTTTHHHHHHHH------HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred CCCCcCCHHHHHHHHHHH------HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 888876542111 11111 13568999999999987 233344444 899999999999873
Q ss_pred -CC----CcCCCCCCCEEEcCCCCCCC-----ccc-cccccccceeecccCCcCCC-----c-ccCCCCCCCCEEECcCC
Q 002014 206 -VD----NLRKCVNLKHLDLGFNNLRS-----IAA-FSEVSCHIVKLVLRNNALTT-----L-RGIENLKSLEGLDISYN 268 (982)
Q Consensus 206 -l~----~L~~L~sL~~LdLS~N~Ls~-----L~~-l~~~L~sL~~L~Ls~N~Ls~-----L-~~L~~L~sL~~LdLS~N 268 (982)
++ .+..+++|+.|+|++|.|+. +.+ .+..+++|+.|+|++|.|+. + ..+..+++|+.|+|++|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 33 46678899999999998872 222 45567889999999999852 3 36788899999999999
Q ss_pred CCCCCchh---hhh--cCCCCCcEEEecCCCCCCC--cccchhHhhhcCCCceeecCCCccChHH
Q 002014 269 IISTFSEL---EFL--ASLPYLLNLWLEGNPLCCS--RWYRAQVFSYFAHPAKLKVDGKEISTRE 326 (982)
Q Consensus 269 ~Ls~l~~l---~~L--~~Lp~L~~L~LsgNpLs~~--~~~r~~v~~~l~~L~lL~LdgN~Is~~e 326 (982)
.|+..... ..+ +.+++|+.|+|++|+++.. ..+...++..++.|+.++|.+|+++...
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 98875211 334 3488999999999998752 0122233355788999999999998665
No 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.75 E-value=5.3e-19 Score=201.57 Aligned_cols=114 Identities=23% Similarity=0.191 Sum_probs=67.6
Q ss_pred hcCCcEEEecCCCccch-Hhhh-hcccccccccCCCCccccccccccCCCCCCc----hhhHHHhcCCCCCcEEEccCCC
Q 002014 25 IEGSIVLKLNPAGLHYV-QSRL-EALRELERLLAGAPLDYLRAYVSDLGDHRAL----EQLRRILKLLTSLKVVSALPPP 98 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~L-p~~L-~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L----~~Lp~~L~~L~~Lk~L~Ls~N~ 98 (982)
+.+++.|+++.+.+... +..+ ..+.. . .-.+..+++++|... ..++..+..+++|++|+|++|.
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~------~----~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQT------P----SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCS------T----TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhh------C----CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 46788999999888753 2222 22331 0 001233556666544 3567777777888888887777
Q ss_pred CCCCCCcC-----CCCCCCccEEEeeCCCCCccc----hhhHHhhhhhhHhhhccCCCc
Q 002014 99 ARDPTPLS-----LLPFCRLKVLELRGCDLSTSA----AKGLLELRHTLEKIICHNSTN 148 (982)
Q Consensus 99 L~~~iP~s-----f~~L~nL~~LdLS~N~Lss~~----p~~L~~L~~LLeLLL~~N~L~ 148 (982)
+.+..+.. +..+++|++|+|++|.++... +..+..+++|.++.+.+|.+.
T Consensus 125 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~ 183 (461)
T 1z7x_W 125 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence 76433322 223456777777777777533 445555666666777776543
No 84
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=4.3e-19 Score=202.29 Aligned_cols=281 Identities=17% Similarity=0.132 Sum_probs=176.7
Q ss_pred hhcCCcEEEecCCCcc-----chHhhhhcccccccccCCCCccccccccccCCCCCCchhhH-HHhcCCC----CCcEEE
Q 002014 24 LIEGSIVLKLNPAGLH-----YVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLR-RILKLLT----SLKVVS 93 (982)
Q Consensus 24 lL~sl~~L~L~~~~L~-----~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp-~~L~~L~----~Lk~L~ 93 (982)
.+.+++.|+++.+.+. .++..+..+++|+. +++++|...+..+ .....++ +|++|+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~--------------L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~ 91 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAE--------------LNLRSNELGDVGVHCVLQGLQTPSCKIQKLS 91 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCE--------------EECTTCCCHHHHHHHHHHTTCSTTCCCCEEE
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCE--------------EeCCCCcCChHHHHHHHHHHhhCCCceeEEE
Confidence 3557788888888877 45555555555444 5667776544333 3344566 799999
Q ss_pred ccCCCCCC----CCCcCCCCCCCccEEEeeCCCCCccchhhHHh-----hhhhhHhhhccCCCccchhh-cccchhcccC
Q 002014 94 ALPPPARD----PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLE-----LRHTLEKIICHNSTNALRHV-FASRIVEIKD 163 (982)
Q Consensus 94 Ls~N~L~~----~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~-----L~~LLeLLL~~N~L~~L~~l-~~~~l~~L~~ 163 (982)
|++|.++. .+|..|..+++|++|+|++|.++...+..+.. +++|.++.+.+|.+...... ++..+
T Consensus 92 L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l----- 166 (461)
T 1z7x_W 92 LQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL----- 166 (461)
T ss_dssp CTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH-----
T ss_pred ccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH-----
Confidence 99999884 45788999999999999999998755555544 23477777888876543211 11111
Q ss_pred CCCCCCccEEEccCCccccch-hhcC-----CCCCCCEEEcCCCCCCCC-----C-CcCCCCCCCEEEcCCCCCCCcc--
Q 002014 164 SPQWNRLSFVSCSCNRLVIMD-ESLQ-----LLPAVETLDLSRNKFAKV-----D-NLRKCVNLKHLDLGFNNLRSIA-- 229 (982)
Q Consensus 164 l~~L~~Lq~LdLS~N~Lt~LP-~sL~-----~L~~L~~LdLS~N~Lt~l-----~-~L~~L~sL~~LdLS~N~Ls~L~-- 229 (982)
..+++|++|++++|.++..+ ..+. .+++|++|+|++|.++.. + .+..+++|+.|+|++|.+....
T Consensus 167 -~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 167 -RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp -HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred -hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 12457778888887776321 1221 355777777777777762 2 4556677777777777766432
Q ss_pred ----ccccccccceeecccCCcCCC-----cc-cCCCCCCCCEEECcCCCCCCCchhhhhc-----CCCCCcEEEecCCC
Q 002014 230 ----AFSEVSCHIVKLVLRNNALTT-----LR-GIENLKSLEGLDISYNIISTFSELEFLA-----SLPYLLNLWLEGNP 294 (982)
Q Consensus 230 ----~l~~~L~sL~~L~Ls~N~Ls~-----L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~-----~Lp~L~~L~LsgNp 294 (982)
.....+++|+.|+|++|.|+. ++ .+..+++|+.|+|++|.|+.... ..+. ..++|+.|+|++|.
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA-RLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH-HHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH-HHHHHHhccCCccceeeEcCCCC
Confidence 122235677777777777776 22 45556777777777777654321 1111 23577777777777
Q ss_pred CCCCc-ccchhHhhhcCCCceeecCCCccChH
Q 002014 295 LCCSR-WYRAQVFSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 295 Ls~~~-~~r~~v~~~l~~L~lL~LdgN~Is~~ 325 (982)
++... ......+..++.++.++|.+|.++..
T Consensus 325 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 325 FTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp CBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred CchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 76442 11223345556777777777776644
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=1.8e-18 Score=193.17 Aligned_cols=253 Identities=15% Similarity=0.130 Sum_probs=169.5
Q ss_pred cCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCC----cCCCCCC-CccEEEeeCCCCCccchhhHHhh-----hhhh
Q 002014 69 DLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTP----LSLLPFC-RLKVLELRGCDLSTSAAKGLLEL-----RHTL 138 (982)
Q Consensus 69 dLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP----~sf~~L~-nL~~LdLS~N~Lss~~p~~L~~L-----~~LL 138 (982)
+++.+...+.+|..+...++|++|+|++|.+.+..+ ..|..++ +|++|+|++|.|+...+..+..+ +++.
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 345555555566666666667777777777766555 5566666 67777777777766666666665 6666
Q ss_pred HhhhccCCCccchhh-cccchhcccCCCCC-CCccEEEccCCccccchh-----hcCCC-CCCCEEEcCCCCCCCCC---
Q 002014 139 EKIICHNSTNALRHV-FASRIVEIKDSPQW-NRLSFVSCSCNRLVIMDE-----SLQLL-PAVETLDLSRNKFAKVD--- 207 (982)
Q Consensus 139 eLLL~~N~L~~L~~l-~~~~l~~L~~l~~L-~~Lq~LdLS~N~Lt~LP~-----sL~~L-~~L~~LdLS~N~Lt~l~--- 207 (982)
++.+.+|.+...... +...+. .+ ++|++|+|++|.|+..+. .+..+ ++|++|+|++|.|+...
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~------~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLA------AIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHH------TSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred EEECcCCcCChHHHHHHHHHHH------hCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 666666665433321 111111 22 589999999999985543 34453 58999999999988531
Q ss_pred ---CcCCCC-CCCEEEcCCCCCCCccc-----ccccc-ccceeecccCCcCCC-----cc-cCCC-CCCCCEEECcCCCC
Q 002014 208 ---NLRKCV-NLKHLDLGFNNLRSIAA-----FSEVS-CHIVKLVLRNNALTT-----LR-GIEN-LKSLEGLDISYNII 270 (982)
Q Consensus 208 ---~L~~L~-sL~~LdLS~N~Ls~L~~-----l~~~L-~sL~~L~Ls~N~Ls~-----L~-~L~~-L~sL~~LdLS~N~L 270 (982)
.+..++ +|+.|+|++|.|+.... ....+ ++|+.|+|++|.|+. ++ .+.. .++|+.|+|++|.|
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 344554 89999999999886553 22334 489999999999988 32 3444 45899999999999
Q ss_pred CCCch---hhhhcCCCCCcEEEecCCCCCCCccc----chhHhhhcCCCceeecCCCccChHHH
Q 002014 271 STFSE---LEFLASLPYLLNLWLEGNPLCCSRWY----RAQVFSYFAHPAKLKVDGKEISTREL 327 (982)
Q Consensus 271 s~l~~---l~~L~~Lp~L~~L~LsgNpLs~~~~~----r~~v~~~l~~L~lL~LdgN~Is~~e~ 327 (982)
+..+. ...+..+++|+.|+|++|.+.....- ....+..++.++.++|++|++.....
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 88754 13346788999999999986543211 11224456668888999999987643
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.1e-17 Score=200.81 Aligned_cols=176 Identities=22% Similarity=0.235 Sum_probs=144.7
Q ss_pred hcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhccc
Q 002014 83 LKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (982)
Q Consensus 83 L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~ 162 (982)
+..|++|+.|+|.+|.+... | .|..+++|+.|+|++|.|++..| +..
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~----------------------------- 85 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTN----------------------------- 85 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGG-----------------------------
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hcc-----------------------------
Confidence 35688999999999998754 3 58889999999999999987443 222
Q ss_pred CCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeec
Q 002014 163 DSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLV 242 (982)
Q Consensus 163 ~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~ 242 (982)
+++|+.|+|++|.|..+| .+..+++|+.|+|++|.|..++.+..+++|+.|+|++|.|+.+ +.+..+++|+.|+
T Consensus 86 ----l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~ 159 (605)
T 1m9s_A 86 ----LKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 159 (605)
T ss_dssp ----CTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEE
T ss_pred ----CCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEE
Confidence 457888899999888875 6788889999999999988888888888999999999988887 4445678899999
Q ss_pred ccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 243 LRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 243 Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
|++|.|+.++.+..+++|+.|+|++|.|+.++ .+..+++|+.|+|++|++...+.
T Consensus 160 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 160 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCCC
T ss_pred CcCCcCCCchhhccCCCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCcc
Confidence 99999888766888899999999999988874 37788899999999998876653
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=1.1e-17 Score=175.38 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=152.0
Q ss_pred CCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCC
Q 002014 99 ARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN 178 (982)
Q Consensus 99 L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N 178 (982)
++ .+|. +. ++|++|+|++|.|++..+..|.. +++|++|++++|
T Consensus 23 l~-~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~---------------------------------l~~L~~L~l~~n 65 (239)
T 2xwt_C 23 IQ-RIPS-LP--PSTQTLKLIETHLRTIPSHAFSN---------------------------------LPNISRIYVSID 65 (239)
T ss_dssp CS-SCCC-CC--TTCCEEEEESCCCSEECTTTTTT---------------------------------CTTCCEEEEECC
T ss_pred cc-ccCC-CC--CcccEEEEeCCcceEECHHHccC---------------------------------CCCCcEEeCCCC
Confidence 44 4555 43 48999999999998855544433 458999999999
Q ss_pred c-cccchh-hcCCCCCCCEEEcCC-CCCCCCC--CcCCCCCCCEEEcCCCCCCCccccccccccce---eecccCC-cCC
Q 002014 179 R-LVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV---KLVLRNN-ALT 249 (982)
Q Consensus 179 ~-Lt~LP~-sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~---~L~Ls~N-~Ls 249 (982)
. ++.++. .|..+++|++|+|++ |.++.++ .|..+++|+.|+|++|.++.++. +..+++|+ .|++++| .++
T Consensus 66 ~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 66 VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchh
Confidence 7 998876 789999999999999 9999875 68899999999999999999887 55567777 9999999 999
Q ss_pred Ccc--cCCCCCCCC-EEECcCCCCCCCchhhhhcCCCCCcEEEecCCC-CCCCcccchhHhhhc-CCCceeecCCCccCh
Q 002014 250 TLR--GIENLKSLE-GLDISYNIISTFSELEFLASLPYLLNLWLEGNP-LCCSRWYRAQVFSYF-AHPAKLKVDGKEIST 324 (982)
Q Consensus 250 ~L~--~L~~L~sL~-~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNp-Ls~~~~~r~~v~~~l-~~L~lL~LdgN~Is~ 324 (982)
.++ .+..+++|+ .|+|++|.|+.++. ..+.. ++|+.|+|++|+ +...+ ...|..+ +.++.++|.+|+++.
T Consensus 145 ~i~~~~~~~l~~L~~~L~l~~n~l~~i~~-~~~~~-~~L~~L~L~~n~~l~~i~---~~~~~~l~~~L~~L~l~~N~l~~ 219 (239)
T 2xwt_C 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQG-YAFNG-TKLDAVYLNKNKYLTVID---KDAFGGVYSGPSLLDVSQTSVTA 219 (239)
T ss_dssp EECTTTTTTTBSSEEEEECCSCCCCEECT-TTTTT-CEEEEEECTTCTTCCEEC---TTTTTTCSBCCSEEECTTCCCCC
T ss_pred hcCcccccchhcceeEEEcCCCCCcccCH-hhcCC-CCCCEEEcCCCCCcccCC---HHHhhccccCCcEEECCCCcccc
Confidence 985 489999999 99999999998875 33444 899999999996 87443 3456677 899999999999875
Q ss_pred H
Q 002014 325 R 325 (982)
Q Consensus 325 ~ 325 (982)
.
T Consensus 220 l 220 (239)
T 2xwt_C 220 L 220 (239)
T ss_dssp C
T ss_pred C
Confidence 3
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=3.4e-17 Score=173.50 Aligned_cols=171 Identities=18% Similarity=0.198 Sum_probs=144.2
Q ss_pred cccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC
Q 002014 67 VSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS 146 (982)
Q Consensus 67 ~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~ 146 (982)
.++++++. +..+|..+. ++|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+..|..
T Consensus 18 ~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------- 81 (251)
T 3m19_A 18 EVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD------------- 81 (251)
T ss_dssp EEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTT-------------
T ss_pred EEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhcc-------------
Confidence 35555543 455665443 68999999999999999999999999999999999998865544433
Q ss_pred CccchhhcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCC
Q 002014 147 TNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFN 223 (982)
Q Consensus 147 L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N 223 (982)
+++|++|+|++|+|+.+|. .|..+++|++|+|++|.|+.++ .+..+++|+.|+|++|
T Consensus 82 --------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 141 (251)
T 3m19_A 82 --------------------LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141 (251)
T ss_dssp --------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC
Confidence 4579999999999997775 6789999999999999999886 4788999999999999
Q ss_pred CCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCC
Q 002014 224 NLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTF 273 (982)
Q Consensus 224 ~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l 273 (982)
.|+.+++ .+..+++|+.|+|++|+|+.++ .+..+++|+.|+|++|.+...
T Consensus 142 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 142 QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 9999887 5667899999999999999975 688999999999999999865
No 89
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.71 E-value=3.4e-17 Score=195.14 Aligned_cols=179 Identities=19% Similarity=0.232 Sum_probs=96.8
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCC
Q 002014 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (982)
.+|+.|+|++|.+++ +|..+ +++|++|+|++|.|+. +| ..++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~------------------------------- 100 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPA------------------------------- 100 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCT-------------------------------
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccC-------------------------------
Confidence 489999999999987 66555 3899999999999985 55 2233
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCC
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N 246 (982)
+|++|+|++|+|+.+|. +.. +|+.|+|++|.|+.++. .+++|+.|+|++|.|+.++. .+++|+.|+|++|
T Consensus 101 --~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 101 --SLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp --TCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred --CCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC
Confidence 44555555555555444 322 45555555555555444 34555555555555554443 2344555555555
Q ss_pred cCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCC-------cEEEecCCCCCCCcccchhHhhhcCCCceeecCC
Q 002014 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYL-------LNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDG 319 (982)
Q Consensus 247 ~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L-------~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~Ldg 319 (982)
.|+.+|.+. ++|+.|+|++|.|+.+|. +.. +| +.|+|++|.|+..+. .+..++.++.++|.+
T Consensus 171 ~L~~lp~l~--~~L~~L~Ls~N~L~~lp~---~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 171 QLTFLPELP--ESLEALDVSTNLLESLPA---VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDPTCTIILED 239 (571)
T ss_dssp CCSCCCCCC--TTCCEEECCSSCCSSCCC---CC----------CCEEEECCSSCCCCCCG----GGGGSCTTEEEECCS
T ss_pred CCCCcchhh--CCCCEEECcCCCCCchhh---HHH--hhhcccccceEEecCCCcceecCH----HHhcCCCCCEEEeeC
Confidence 555544422 455555555555554442 211 33 555555555543321 122244555555555
Q ss_pred CccCh
Q 002014 320 KEIST 324 (982)
Q Consensus 320 N~Is~ 324 (982)
|+++.
T Consensus 240 N~l~~ 244 (571)
T 3cvr_A 240 NPLSS 244 (571)
T ss_dssp SSCCH
T ss_pred CcCCC
Confidence 55544
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=1.8e-17 Score=184.34 Aligned_cols=224 Identities=14% Similarity=0.040 Sum_probs=170.6
Q ss_pred CchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccch-hhHHhhhhhhHhh-hccCCCccchh
Q 002014 75 ALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAA-KGLLELRHTLEKI-ICHNSTNALRH 152 (982)
Q Consensus 75 ~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p-~~L~~L~~LLeLL-L~~N~L~~L~~ 152 (982)
.++.+|..+ .++|++|+|++|+|+.+.+.+|.++++|++|+|++|.+.+.+| ..|.+++++++++ +..|++..++.
T Consensus 20 ~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 20 KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 456677644 4689999999999997777889999999999999999876554 4677888777654 44577766654
Q ss_pred hcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCC-CCCCCCC--CcCCC-CCCCEEEcCCCCCCC
Q 002014 153 VFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSR-NKFAKVD--NLRKC-VNLKHLDLGFNNLRS 227 (982)
Q Consensus 153 l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L-~sL~~LdLS~N~Ls~ 227 (982)
..+ ..+++|++|++++|+|..+|. .+....++..|++.+ |.+..++ .|..+ ..++.|+|++|.|+.
T Consensus 98 ~~f---------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 98 EAF---------QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TSB---------CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred hhh---------hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 322 256799999999999997775 555667788888865 6787765 45665 468999999999999
Q ss_pred ccccccccccceeeccc-CCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCC-CCCCCcccch
Q 002014 228 IAAFSEVSCHIVKLVLR-NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN-PLCCSRWYRA 303 (982)
Q Consensus 228 L~~l~~~L~sL~~L~Ls-~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgN-pLs~~~~~r~ 303 (982)
++.......+|+.|++. +|.++.++ .|..+++|+.|+|++|+|+.+|. ..+.+|+.|.+.++ .+...+.
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~lP~--- 241 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKKLPT--- 241 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCCCCC---
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCcCCC---
Confidence 98766566789999997 57888886 57899999999999999999984 34566777776554 3443332
Q ss_pred hHhhhcCCCceeecC
Q 002014 304 QVFSYFAHPAKLKVD 318 (982)
Q Consensus 304 ~v~~~l~~L~lL~Ld 318 (982)
+..++.|+.+.+.
T Consensus 242 --l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 242 --LEKLVALMEASLT 254 (350)
T ss_dssp --TTTCCSCCEEECS
T ss_pred --chhCcChhhCcCC
Confidence 4567788888875
No 91
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=5.7e-18 Score=189.15 Aligned_cols=249 Identities=17% Similarity=0.127 Sum_probs=180.1
Q ss_pred EEecCCCccchHhhh-hcccccccccCCCCccccccccccCCCCCCchhhH----HHhcCCC-CCcEEEccCCCCCCCCC
Q 002014 31 LKLNPAGLHYVQSRL-EALRELERLLAGAPLDYLRAYVSDLGDHRALEQLR----RILKLLT-SLKVVSALPPPARDPTP 104 (982)
Q Consensus 31 L~L~~~~L~~Lp~~L-~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp----~~L~~L~-~Lk~L~Ls~N~L~~~iP 104 (982)
+.++.+.+..+...+ ...++|+. ++|++|.....-+ ..+..++ +|++|+|++|.+.+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~--------------L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 68 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTS--------------LDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS 68 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCE--------------EECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH
T ss_pred cccccccchHHHHHHHhCCCCceE--------------EEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH
Confidence 456667776443333 33333333 5566665333323 6778888 89999999998887777
Q ss_pred cCCCCC-----CCccEEEeeCCCCCccchhhHHhh-----hhhhHhhhccCCCccchhhcccchhcccCCCC-CCCccEE
Q 002014 105 LSLLPF-----CRLKVLELRGCDLSTSAAKGLLEL-----RHTLEKIICHNSTNALRHVFASRIVEIKDSPQ-WNRLSFV 173 (982)
Q Consensus 105 ~sf~~L-----~nL~~LdLS~N~Lss~~p~~L~~L-----~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~-L~~Lq~L 173 (982)
..|..+ ++|++|+|++|.|++..+..+... ++|..+.+.+|.+........... +.. .++|++|
T Consensus 69 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-----l~~~~~~L~~L 143 (362)
T 3goz_A 69 DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQA-----FSNLPASITSL 143 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH-----HTTSCTTCCEE
T ss_pred HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHH-----HHhCCCceeEE
Confidence 666664 889999999999887777666554 677788888887655443211110 112 2489999
Q ss_pred EccCCccc-----cchhhcCCCC-CCCEEEcCCCCCCCCC------CcCCC-CCCCEEEcCCCCCCC-----ccccccc-
Q 002014 174 SCSCNRLV-----IMDESLQLLP-AVETLDLSRNKFAKVD------NLRKC-VNLKHLDLGFNNLRS-----IAAFSEV- 234 (982)
Q Consensus 174 dLS~N~Lt-----~LP~sL~~L~-~L~~LdLS~N~Lt~l~------~L~~L-~sL~~LdLS~N~Ls~-----L~~l~~~- 234 (982)
+|++|.|+ .++..+..++ +|++|+|++|.|+... .+..+ ++|+.|+|++|.|+. ++..+..
T Consensus 144 ~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~ 223 (362)
T 3goz_A 144 NLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSI 223 (362)
T ss_dssp ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHS
T ss_pred EccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcC
Confidence 99999999 5556667776 9999999999998653 34555 599999999999987 4443333
Q ss_pred cccceeecccCCcCCCcc------cCCCCCCCCEEECcCCCCCCCchh------hhhcCCCCCcEEEecCCCCCCC
Q 002014 235 SCHIVKLVLRNNALTTLR------GIENLKSLEGLDISYNIISTFSEL------EFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 235 L~sL~~L~Ls~N~Ls~L~------~L~~L~sL~~LdLS~N~Ls~l~~l------~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
.++|+.|+|++|.|+..+ .+..+++|+.|+|++|.+..+... ..+..+++|+.|++++|++...
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 458999999999998852 468889999999999997765531 2456788999999999999755
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.70 E-value=1.7e-16 Score=170.33 Aligned_cols=197 Identities=20% Similarity=0.236 Sum_probs=163.1
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCC
Q 002014 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQW 167 (982)
Q Consensus 88 ~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L 167 (982)
.+..+++..+.+.+.. .+..+++|+.|++++|.++. ++ .+. .+
T Consensus 20 ~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-~~-~l~---------------------------------~l 62 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQ---------------------------------YL 62 (272)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCC-CT-TGG---------------------------------GC
T ss_pred HHHHHHhcCccccccc--ccccccceeeeeeCCCCccc-cc-ccc---------------------------------cC
Confidence 3445566666665443 45578899999999998875 22 122 24
Q ss_pred CCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcccc-ccccccceeeccc
Q 002014 168 NRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVLR 244 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l-~~~L~sL~~L~Ls 244 (982)
++|++|++++|.++.++ .+..+++|++|+|++|.++.++ .+..+++|+.|+|++|.++.+++. +..+++|+.|+|+
T Consensus 63 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 58999999999999875 7889999999999999999986 488999999999999999998863 5668999999999
Q ss_pred CCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCcc
Q 002014 245 NNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (982)
Q Consensus 245 ~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~I 322 (982)
+|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+++..+ ...+..++.++.++|.+|++
T Consensus 142 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-GVFDKLTQLKDLRLYQNQLKSVP---DGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCB
T ss_pred CCccCccCHHHhccCccCCEEECCCCCcCccCH-HHhcCCccCCEEECCCCcCCccC---HHHHhCCcCCCEEEccCCCc
Confidence 99999985 47899999999999999999875 56789999999999999998654 34567789999999999999
Q ss_pred ChHH
Q 002014 323 STRE 326 (982)
Q Consensus 323 s~~e 326 (982)
.+..
T Consensus 218 ~~~~ 221 (272)
T 3rfs_A 218 DCTC 221 (272)
T ss_dssp CCCT
T ss_pred cccC
Confidence 8653
No 93
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=6.3e-18 Score=181.48 Aligned_cols=171 Identities=21% Similarity=0.203 Sum_probs=113.9
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCC
Q 002014 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (982)
Q Consensus 86 L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~ 165 (982)
+.+|..++|..|.+++.. .+..+++|+.|+|++|.|+. ++ .+.
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~--------------------------------- 60 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQ--------------------------------- 60 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGG---------------------------------
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHh---------------------------------
Confidence 334445555666655332 35556666666666666654 22 121
Q ss_pred CCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccC
Q 002014 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRN 245 (982)
Q Consensus 166 ~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~ 245 (982)
.+++|++|+|++|+|+.+|. +..+++|+.|+|++|+++.++.+.. ++|+.|+|++|.|+.++. +..+++|+.|+|++
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~ 137 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRN 137 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTT
T ss_pred hCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc-CcccEEEccCCccCCChh-hcCcccccEEECCC
Confidence 13356677777777766655 6667777777777777777665555 777777777777777654 34457777777777
Q ss_pred CcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 246 NALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 246 N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
|+|+.++.+..+++|+.|+|++|.|+++ ..+..+++|+.|++++|++++.+
T Consensus 138 N~i~~~~~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 138 NKLKSIVMLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp SCCCBCGGGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEECCC
T ss_pred CcCCCChHHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCcccCCc
Confidence 7777777777788888888888888876 34677888888888888887664
No 94
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.3e-19 Score=213.68 Aligned_cols=198 Identities=20% Similarity=0.196 Sum_probs=147.2
Q ss_pred CCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC-Cccch---------hhcccchhcccCCCCCCCccEEE---
Q 002014 108 LPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS-TNALR---------HVFASRIVEIKDSPQWNRLSFVS--- 174 (982)
Q Consensus 108 ~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~-L~~L~---------~l~~~~l~~L~~l~~L~~Lq~Ld--- 174 (982)
..+++|+.|+|++|.|+. +|..++++++|.++.+.+|. +..++ ...+..+. .+++|+.|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~-Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~------~l~~L~~L~~l~ 418 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTV-LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQ------YFSTLKAVDPMR 418 (567)
T ss_dssp STTTTSSSCCCCHHHHHH-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHH------HHHHHHHHCGGG
T ss_pred ccCccceeccCChhhHHh-hHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHH------HHHhcccCcchh
Confidence 456677777777777753 66777777776666654331 00000 00111111 122444444
Q ss_pred -----------ccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecc
Q 002014 175 -----------CSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVL 243 (982)
Q Consensus 175 -----------LS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~L 243 (982)
+++|.|+.+|. ..|+.|+|++|.|+.+|.+..+++|+.|+|++|.|+.+|..+..+++|+.|+|
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L 493 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred hcccchhhhhhhhcccccccCc-----cCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEEC
Confidence 44444554433 25899999999999998899999999999999999999888888899999999
Q ss_pred cCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeec
Q 002014 244 RNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKV 317 (982)
Q Consensus 244 s~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~L 317 (982)
++|+|+.+|.+..+++|+.|+|++|.|++++....+..+++|+.|+|++|+|+..+......+..++.|+.|+|
T Consensus 494 s~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 494 SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999999999999999999999999841267899999999999999999887777677777888888753
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.69 E-value=8.7e-17 Score=174.95 Aligned_cols=187 Identities=21% Similarity=0.231 Sum_probs=159.1
Q ss_pred EEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCc
Q 002014 91 VVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRL 170 (982)
Q Consensus 91 ~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~L 170 (982)
.+.+..+.+.+.. .+..+++|+.|++++|.+... + .+. .+++|
T Consensus 28 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~---------------------------------~l~~L 70 (291)
T 1h6t_A 28 KDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQ---------------------------------YLPNV 70 (291)
T ss_dssp HHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGG---------------------------------GCTTC
T ss_pred HHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHh---------------------------------cCCCC
Confidence 3445556665433 345678999999999998763 2 122 24589
Q ss_pred cEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCC
Q 002014 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT 250 (982)
Q Consensus 171 q~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~ 250 (982)
++|++++|+++.++. +..+++|++|+|++|.++.++.+..+++|+.|+|++|.++.++. +..+++|+.|+|++|.|+.
T Consensus 71 ~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~~-l~~l~~L~~L~l~~n~l~~ 148 (291)
T 1h6t_A 71 TKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGNNKITD 148 (291)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred CEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCChh-hcCCCCCCEEEccCCcCCc
Confidence 999999999998877 99999999999999999999999999999999999999999854 4457999999999999999
Q ss_pred cccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 251 LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 251 L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
++.+..+++|+.|+|++|.|+++++ +..+++|+.|+|++|+++..+ .+..++.|+.++|.+|+++.
T Consensus 149 ~~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~l~-----~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 149 ITVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDLR-----ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CGGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBCG-----GGTTCTTCSEEEEEEEEEEC
T ss_pred chhhccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCCCh-----hhccCCCCCEEECcCCcccC
Confidence 9999999999999999999999874 889999999999999998653 26678999999999999874
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.68 E-value=1.6e-17 Score=181.66 Aligned_cols=238 Identities=15% Similarity=0.144 Sum_probs=157.1
Q ss_pred ccccCCCCCCchhhHHHhcCC--CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCcc-chhhHHhhhhhhHhhh
Q 002014 66 YVSDLGDHRALEQLRRILKLL--TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTS-AAKGLLELRHTLEKII 142 (982)
Q Consensus 66 ~~LdLs~n~~L~~Lp~~L~~L--~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~-~p~~L~~L~~LLeLLL 142 (982)
..++++++... +..+..+ ++|+.|++.+|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|..+.+
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 34677766543 4556667 8999999999999877665 56799999999999998865 6777777777777777
Q ss_pred ccCCCccchhhcccchhcccCCCCCCCccEEEccCC-ccc--cchhhcCCCCCCCEEEcCCC-CCCC--CC-CcCCCC-C
Q 002014 143 CHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCN-RLV--IMDESLQLLPAVETLDLSRN-KFAK--VD-NLRKCV-N 214 (982)
Q Consensus 143 ~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N-~Lt--~LP~sL~~L~~L~~LdLS~N-~Lt~--l~-~L~~L~-s 214 (982)
.+|.+... .+..+ ..+++|++|++++| .++ .++..+..+++|++|+|++| .++. ++ .+..++ +
T Consensus 126 ~~~~l~~~---~~~~l------~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 126 EGLRLSDP---IVNTL------AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 196 (336)
T ss_dssp TTCBCCHH---HHHHH------TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred cCcccCHH---HHHHH------hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccC
Confidence 77654321 11111 13567888888887 566 36666777778888888887 7764 22 456667 7
Q ss_pred CCEEEcCCCC--C--CCccccccccccceeecccCCc-CCC--cccCCCCCCCCEEECcCCC-CCCCchhhhhcCCCCCc
Q 002014 215 LKHLDLGFNN--L--RSIAAFSEVSCHIVKLVLRNNA-LTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLL 286 (982)
Q Consensus 215 L~~LdLS~N~--L--s~L~~l~~~L~sL~~L~Ls~N~-Ls~--L~~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~Lp~L~ 286 (982)
|+.|+|++|. + ..++.....+++|+.|+|++|. ++. ++.+..+++|+.|+|++|. +... .+..+..+++|+
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~ 275 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-TLLELGEIPTLK 275 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-GGGGGGGCTTCC
T ss_pred CCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-HHHHHhcCCCCC
Confidence 8888888874 3 2344455556778888888877 544 3466777788888888774 3221 123466777888
Q ss_pred EEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 287 NLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 287 ~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
.|+|++| ++... + ..+. ..+..+.+++|.++
T Consensus 276 ~L~l~~~-i~~~~-~--~~l~--~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 276 TLQVFGI-VPDGT-L--QLLK--EALPHLQINCSHFT 306 (336)
T ss_dssp EEECTTS-SCTTC-H--HHHH--HHSTTSEESCCCSC
T ss_pred EEeccCc-cCHHH-H--HHHH--hhCcceEEecccCc
Confidence 8888877 43221 1 1111 22445556777765
No 97
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=1.1e-16 Score=179.16 Aligned_cols=176 Identities=26% Similarity=0.274 Sum_probs=114.0
Q ss_pred cEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCC
Q 002014 90 KVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNR 169 (982)
Q Consensus 90 k~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~ 169 (982)
+.++++++.++. +|..+. +.|+.|+|++|.|++..+..+. ..+++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~--------------------------------~~l~~ 65 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTP--------------------------------TRLTN 65 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSS--------------------------------SCCTT
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhh--------------------------------hcccc
Confidence 456666666653 344332 3566777777776653332221 02346
Q ss_pred ccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccC
Q 002014 170 LSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (982)
Q Consensus 170 Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (982)
|+.|+|++|+|+.++. .|..+++|++|+|++|+|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 66 L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~ 145 (361)
T 2xot_A 66 LHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145 (361)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC
Confidence 6677777777765553 5666777777777777776654 46666777777777777766543 444566777777777
Q ss_pred CcCCCcc--cC---CCCCCCCEEECcCCCCCCCchhhhhcCCCC--CcEEEecCCCCCCCccc
Q 002014 246 NALTTLR--GI---ENLKSLEGLDISYNIISTFSELEFLASLPY--LLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 246 N~Ls~L~--~L---~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~--L~~L~LsgNpLs~~~~~ 301 (982)
|+|+.++ .+ ..+++|+.|+|++|.|+.++. ..+..++. |+.|+|.+||+.|+|.+
T Consensus 146 N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp SCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhccHhhcceEEecCCCccCCcCc
Confidence 7777664 22 568889999999999988874 55667776 47889999999988754
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=3.2e-16 Score=188.05 Aligned_cols=166 Identities=20% Similarity=0.244 Sum_probs=143.2
Q ss_pred ccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCC
Q 002014 68 SDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNST 147 (982)
Q Consensus 68 LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L 147 (982)
+++++|. +..++ .+..+++|+.|+|++|.+.+..| |..+++|+.|+|++|.|++ +| .+
T Consensus 48 L~l~~n~-i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l---------------- 105 (605)
T 1m9s_A 48 IIANNSD-IKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SL---------------- 105 (605)
T ss_dssp CBCTTCC-CCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TS----------------
T ss_pred EECcCCC-CCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hh----------------
Confidence 4455444 33454 47889999999999999997665 8899999999999999976 22 11
Q ss_pred ccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCC
Q 002014 148 NALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS 227 (982)
Q Consensus 148 ~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~ 227 (982)
..+++|+.|+|++|.|..++ .+..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|..
T Consensus 106 -----------------~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 106 -----------------KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp -----------------TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred -----------------ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCC
Confidence 23568999999999999874 588999999999999999999889999999999999999999
Q ss_pred ccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCc
Q 002014 228 IAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFS 274 (982)
Q Consensus 228 L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~ 274 (982)
+++ +..+++|+.|+|++|.|+.++.+..+++|+.|+|++|.|...|
T Consensus 168 ~~~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 168 IVP-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEECCC
T ss_pred chh-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCcCCc
Confidence 887 5667999999999999999999999999999999999998865
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.65 E-value=7.6e-16 Score=161.64 Aligned_cols=155 Identities=23% Similarity=0.311 Sum_probs=123.3
Q ss_pred CCccEEEccCCccccc-hhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecc
Q 002014 168 NRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~L 243 (982)
++|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 4789999999999966 557888999999999999998875 47889999999999999998876 3456789999999
Q ss_pred cCCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhH--hhhcCCCceeecCCC
Q 002014 244 RNNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQV--FSYFAHPAKLKVDGK 320 (982)
Q Consensus 244 s~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v--~~~l~~L~lL~LdgN 320 (982)
++|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++||+.|.|...... +..-.......++|+
T Consensus 120 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~~~~~~~~g~ 198 (229)
T 3e6j_A 120 CCNKLTELPRGIERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAMRWDGK 198 (229)
T ss_dssp CSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCGGGEEEESSS
T ss_pred cCCcccccCcccccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCccccccccCc
Confidence 999999885 77888999999999999998875 56788999999999999999887411111 111223445667777
Q ss_pred ccC
Q 002014 321 EIS 323 (982)
Q Consensus 321 ~Is 323 (982)
++.
T Consensus 199 ~v~ 201 (229)
T 3e6j_A 199 AVN 201 (229)
T ss_dssp EEE
T ss_pred ccC
Confidence 664
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=4.7e-16 Score=166.94 Aligned_cols=170 Identities=19% Similarity=0.298 Sum_probs=147.5
Q ss_pred hhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCC
Q 002014 133 ELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKC 212 (982)
Q Consensus 133 ~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L 212 (982)
.+.++..+.+..|.+..+.. +..+++|+.|++++|.|+.+| .+..+++|+.|+|++|+|+.++.+..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~-----------~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l 84 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVS-----------QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDL 84 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEEC-----------HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTC
T ss_pred HHHHHHHHHhcCCCcccccc-----------hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccC
Confidence 45566667777776655542 123568999999999999997 788999999999999999998889999
Q ss_pred CCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecC
Q 002014 213 VNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEG 292 (982)
Q Consensus 213 ~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~Lsg 292 (982)
++|+.|+|++|.++.++.... ++|+.|+|++|+|+.++.+..+++|+.|+|++|+|++++ .+..+++|+.|+|++
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~ 159 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHG 159 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTT
T ss_pred CCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCC
Confidence 999999999999999887654 899999999999999999999999999999999999985 478899999999999
Q ss_pred CCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 293 NPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 293 NpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
|+++.. ..+..++.|+.++|.+|+++.
T Consensus 160 N~i~~~-----~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 160 NEITNT-----GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp SCCCBC-----TTSTTCCCCCEEEEEEEEEEC
T ss_pred CcCcch-----HHhccCCCCCEEeCCCCcccC
Confidence 999865 336678899999999999974
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.64 E-value=1.8e-16 Score=176.42 Aligned_cols=235 Identities=14% Similarity=0.110 Sum_probs=177.9
Q ss_pred cEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCCCC-cC
Q 002014 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTP-LS 106 (982)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~-~L~~L~~Lk~L~Ls~N~L~~~iP-~s 106 (982)
.+++.+.++|..+|..+. ++ +..++|++|. ++.+|. .|.++++|++|+|++|.+.+.+| .+
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--~~--------------l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~ 74 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--RN--------------AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 74 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--TT--------------CSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTS
T ss_pred CEEEecCCCCCccCcCcC--CC--------------CCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhH
Confidence 456777888888886542 22 2335677765 455664 68999999999999999876554 67
Q ss_pred CCCCCCccE-EEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccC-Cccccch
Q 002014 107 LLPFCRLKV-LELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSC-NRLVIMD 184 (982)
Q Consensus 107 f~~L~nL~~-LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~-N~Lt~LP 184 (982)
|.++++|.. +.+.+|+|+.+.|..|..+++|..+.+.+|.+..++...+. ...++..|++.+ |++..+|
T Consensus 75 f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~---------~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 75 FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKI---------HSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp BCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTC---------CBSSCEEEEEESCTTCCEEC
T ss_pred hhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhc---------ccchhhhhhhcccccccccc
Confidence 889988775 66778999998888999999999999999987766543221 234677888865 6788777
Q ss_pred h-hcCCCC-CCCEEEcCCCCCCCCC-CcCCCCCCCEEEcC-CCCCCCccc-cccccccceeecccCCcCCCcccCCCCCC
Q 002014 185 E-SLQLLP-AVETLDLSRNKFAKVD-NLRKCVNLKHLDLG-FNNLRSIAA-FSEVSCHIVKLVLRNNALTTLRGIENLKS 259 (982)
Q Consensus 185 ~-sL~~L~-~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS-~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~s 259 (982)
. .|..+. .|+.|+|++|+|+.++ ......+|+.|+++ +|.++.++. .+..+++|+.|+|++|+|+.+|. ..+.+
T Consensus 146 ~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~ 224 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLEN 224 (350)
T ss_dssp TTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTT
T ss_pred ccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhcc
Confidence 5 566654 6889999999999886 45566789999997 478888886 56778999999999999999873 33566
Q ss_pred CCEEECcCC-CCCCCchhhhhcCCCCCcEEEecCC
Q 002014 260 LEGLDISYN-IISTFSELEFLASLPYLLNLWLEGN 293 (982)
Q Consensus 260 L~~LdLS~N-~Ls~l~~l~~L~~Lp~L~~L~LsgN 293 (982)
|+.|.+.++ .++.+|. +..+++|+.+++.++
T Consensus 225 L~~L~~l~~~~l~~lP~---l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 225 LKKLRARSTYNLKKLPT---LEKLVALMEASLTYP 256 (350)
T ss_dssp CCEEECTTCTTCCCCCC---TTTCCSCCEEECSCH
T ss_pred chHhhhccCCCcCcCCC---chhCcChhhCcCCCC
Confidence 777765444 6777764 678899999999643
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.63 E-value=2e-15 Score=179.94 Aligned_cols=162 Identities=23% Similarity=0.252 Sum_probs=132.1
Q ss_pred CccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCC
Q 002014 112 RLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLP 191 (982)
Q Consensus 112 nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~ 191 (982)
+|+.|+|++|.|++ +|..+ +++|++|+|++|.|+.+| ..++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l-----------------------------------~~~L~~L~Ls~N~l~~ip---~~l~ 100 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL-----------------------------------PPQITVLEITQNALISLP---ELPA 100 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC-----------------------------------CTTCSEEECCSSCCSCCC---CCCT
T ss_pred CccEEEeCCCCCCc-cCHhH-----------------------------------cCCCCEEECcCCCCcccc---cccC
Confidence 89999999999876 44321 137999999999999998 5689
Q ss_pred CCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCC
Q 002014 192 AVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIIS 271 (982)
Q Consensus 192 ~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls 271 (982)
+|+.|+|++|.|+.++.+.. +|+.|+|++|.|+.++. .+++|+.|+|++|.|+.++. .+++|+.|+|++|.|+
T Consensus 101 ~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 101 SLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp TCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCS
T ss_pred CCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCC
Confidence 99999999999999887544 99999999999999887 57899999999999999886 6889999999999999
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 272 ~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
.+|. +. ++|+.|+|++|.|+..+.+....+...+.++.++|.+|.++.
T Consensus 174 ~lp~---l~--~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 174 FLPE---LP--ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp CCCC---CC--TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCC
T ss_pred Ccch---hh--CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCccee
Confidence 9874 44 899999999999996654221111112223999999999984
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=1.6e-15 Score=158.47 Aligned_cols=133 Identities=20% Similarity=0.314 Sum_probs=113.3
Q ss_pred CCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCCCCCCccc-cccccccceeecc
Q 002014 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~L 243 (982)
++|+.|+|++|+|+.+|. .|..+++|+.|+|++|.|+.+ ..|..+++|+.|+|++|.|+.++. .+..+++|+.|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 368899999999997766 788899999999999999886 378889999999999999998886 3456789999999
Q ss_pred cCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 244 s~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
++|+|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|+|.|.|.+
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 999998873 68889999999999999998875 5678889999999999999988754
No 104
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.6e-15 Score=155.01 Aligned_cols=124 Identities=15% Similarity=0.232 Sum_probs=69.1
Q ss_pred CccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCC--CCCcCCCCCCCEEEcCCCCCCC-ccccccccccceeecccC
Q 002014 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAK--VDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRN 245 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~--l~~L~~L~sL~~LdLS~N~Ls~-L~~l~~~L~sL~~L~Ls~ 245 (982)
+|++|++++|.++.++ .+..+++|++|++++|.++. ++.+..+++|+.|+|++|.++. .+..+..+++|+.|+|++
T Consensus 67 ~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 67 NIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp TCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred CCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 3444444444444332 34445555555555555553 3345555555555555555554 222333455666666666
Q ss_pred Cc-CCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCC
Q 002014 246 NA-LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 246 N~-Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs 296 (982)
|. ++.++.+..+++|+.|+|++|.|++++ .+..+++|+.|++++|+|.
T Consensus 146 n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 146 NGAITDIMPLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CTBCCCCGGGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC---
T ss_pred CCCccccHhhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcccC
Confidence 65 555666666777777777777777654 3566777777777777764
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.61 E-value=3.6e-15 Score=155.69 Aligned_cols=157 Identities=20% Similarity=0.193 Sum_probs=136.5
Q ss_pred ccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcc-ccccccccceeecccCC
Q 002014 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIA-AFSEVSCHIVKLVLRNN 246 (982)
Q Consensus 170 Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~-~l~~~L~sL~~L~Ls~N 246 (982)
-+.++++++.++.+|..+. ++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+. ..+..+++|+.|+|++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3679999999999998654 78999999999999875 7899999999999999999885 46677899999999999
Q ss_pred cCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccCh
Q 002014 247 ALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIST 324 (982)
Q Consensus 247 ~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~ 324 (982)
+|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+..+ ...+..++.++.++|.+|++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA---KGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC---HHHHhCCCCCCEEEeCCCCcCC
Confidence 999986 47899999999999999999875 67889999999999999998664 2456778899999999999998
Q ss_pred HHHHHHHH
Q 002014 325 RELWERQL 332 (982)
Q Consensus 325 ~e~~~~~~ 332 (982)
.....+..
T Consensus 167 ~c~l~~l~ 174 (220)
T 2v9t_B 167 DCHLKWLA 174 (220)
T ss_dssp SGGGHHHH
T ss_pred CCccHHHH
Confidence 76554433
No 106
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=4.7e-16 Score=170.03 Aligned_cols=240 Identities=17% Similarity=0.130 Sum_probs=155.5
Q ss_pred CcEEEecCCCccchHhhhhcc--cccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCC-CC
Q 002014 28 SIVLKLNPAGLHYVQSRLEAL--RELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDP-TP 104 (982)
Q Consensus 28 l~~L~L~~~~L~~Lp~~L~~L--~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~-iP 104 (982)
.+.++++.+.+. +..+..+ +++..+ +++++...+..+ .+..+++|++|+|++|.+.+. +|
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L--------------~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~ 111 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAF--------------RCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLH 111 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEE--------------ECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHH
T ss_pred heeeccccccCC--HHHHHhhhhccceEE--------------EcCCccccccch-hhccCCCCCEEEccCCCcCHHHHH
Confidence 467888887766 4444444 443333 333333222222 234566666666666666543 55
Q ss_pred cCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC-CCcc--chhhcccchhcccCCCCCCCccEEEccCC-cc
Q 002014 105 LSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN-STNA--LRHVFASRIVEIKDSPQWNRLSFVSCSCN-RL 180 (982)
Q Consensus 105 ~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N-~L~~--L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N-~L 180 (982)
..+..+++|++|+|++|.+++..|..+..+++|..+.+.+| .+.. ++..+ ..+++|++|++++| .+
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~----------~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL----------SSCSRLDELNLSWCFDF 181 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH----------HHCTTCCEEECCCCTTC
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH----------hcCCCCCEEcCCCCCCc
Confidence 55666666666666666666656666666666666666665 3331 22211 12568999999999 88
Q ss_pred cc--chhhcCCCC-CCCEEEcCCC--CCCC--CC-CcCCCCCCCEEEcCCCC-CCC-ccccccccccceeecccCCc-CC
Q 002014 181 VI--MDESLQLLP-AVETLDLSRN--KFAK--VD-NLRKCVNLKHLDLGFNN-LRS-IAAFSEVSCHIVKLVLRNNA-LT 249 (982)
Q Consensus 181 t~--LP~sL~~L~-~L~~LdLS~N--~Lt~--l~-~L~~L~sL~~LdLS~N~-Ls~-L~~l~~~L~sL~~L~Ls~N~-Ls 249 (982)
+. ++..+..++ +|++|+|++| .++. ++ .+..+++|+.|+|++|. ++. .+..+..+++|+.|+|++|. +.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 261 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 261 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC
Confidence 83 677788899 9999999999 4542 33 45678999999999998 553 33445567999999999995 43
Q ss_pred C--cccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 250 T--LRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 250 ~--L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
. +..+..+++|+.|+|++| ++... +..+. ..|..|++++|.++..
T Consensus 262 ~~~~~~l~~~~~L~~L~l~~~-i~~~~-~~~l~--~~l~~L~l~~n~l~~~ 308 (336)
T 2ast_B 262 PETLLELGEIPTLKTLQVFGI-VPDGT-LQLLK--EALPHLQINCSHFTTI 308 (336)
T ss_dssp GGGGGGGGGCTTCCEEECTTS-SCTTC-HHHHH--HHSTTSEESCCCSCCT
T ss_pred HHHHHHHhcCCCCCEEeccCc-cCHHH-HHHHH--hhCcceEEecccCccc
Confidence 3 235788999999999999 55422 22232 2345556899999865
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=156.75 Aligned_cols=132 Identities=20% Similarity=0.318 Sum_probs=114.2
Q ss_pred CccEEEccCCccccchh--hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecc
Q 002014 169 RLSFVSCSCNRLVIMDE--SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~--sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~L 243 (982)
.+++|+|++|+|+.++. .|..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 56899999999997743 4788999999999999999875 68899999999999999998876 4666899999999
Q ss_pred cCCcCCCc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 244 RNNALTTL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 244 s~N~Ls~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
++|+|+.+ ..+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|+|.|.|.+
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999987 368899999999999999999854 6788899999999999999998754
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=1.7e-15 Score=155.52 Aligned_cols=148 Identities=18% Similarity=0.148 Sum_probs=80.3
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCC
Q 002014 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSP 165 (982)
Q Consensus 86 L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~ 165 (982)
.++|++|+|++|.+.+..+..|..+++|++|+|++|.|++..+..|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------------- 73 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--------------------------------- 73 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---------------------------------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC---------------------------------
Confidence 34666666666666655555566666666666666666543322221
Q ss_pred CCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcccc-ccccccceee
Q 002014 166 QWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKL 241 (982)
Q Consensus 166 ~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l-~~~L~sL~~L 241 (982)
.+++|++|++++|+|+.+|. .+..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.++.++.. +..+++|+.|
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence 23356666666666665544 3455666666666666666553 245555666666666655555442 3334455555
Q ss_pred cccCCcCCCcccCCCCCCCCEEECcCCCCC
Q 002014 242 VLRNNALTTLRGIENLKSLEGLDISYNIIS 271 (982)
Q Consensus 242 ~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls 271 (982)
+|++|.+. ..+++|+.|+++.|.++
T Consensus 154 ~l~~N~~~-----~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 154 WLHDNPWD-----CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ECCSCCBC-----CCTTTTHHHHHHHHHCT
T ss_pred EecCCCee-----cCCCCHHHHHHHHHhCC
Confidence 55555332 23344445555555444
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.60 E-value=1.7e-17 Score=197.64 Aligned_cols=200 Identities=17% Similarity=0.107 Sum_probs=157.5
Q ss_pred cCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-------------CCccchhhHHhhhhhhHhh-hccCCCcc
Q 002014 84 KLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-------------LSTSAAKGLLELRHTLEKI-ICHNSTNA 149 (982)
Q Consensus 84 ~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~-------------Lss~~p~~L~~L~~LLeLL-L~~N~L~~ 149 (982)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|. +.+.+|..+..+++|..+. +..|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44666777777777765 556667777777777765554 5567788888888888887 56665555
Q ss_pred chhhcc--cchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCC
Q 002014 150 LRHVFA--SRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLR 226 (982)
Q Consensus 150 L~~l~~--~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls 226 (982)
++.... +.+..++ ...|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+| .+..+++|+.|+|++|.|+
T Consensus 425 L~~l~l~~n~i~~l~----~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~ 499 (567)
T 1dce_A 425 LRSKFLLENSVLKME----YADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499 (567)
T ss_dssp HHHHHHHHHHHHHHH----HTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred hhhhhhhcccccccC----ccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC
Confidence 554322 1233332 1259999999999999987 999999999999999999986 7999999999999999999
Q ss_pred CccccccccccceeecccCCcCCCc--c-cCCCCCCCCEEECcCCCCCCCchh--hhhcCCCCCcEEEe
Q 002014 227 SIAAFSEVSCHIVKLVLRNNALTTL--R-GIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWL 290 (982)
Q Consensus 227 ~L~~l~~~L~sL~~L~Ls~N~Ls~L--~-~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~Lp~L~~L~L 290 (982)
++| .+..+++|+.|+|++|+|+.+ | .+..+++|+.|+|++|.|+++++. ..+..+|+|+.|++
T Consensus 500 ~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 500 NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 988 566789999999999999997 4 789999999999999999987642 22345899999875
No 110
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=2.5e-15 Score=153.52 Aligned_cols=149 Identities=17% Similarity=0.202 Sum_probs=129.9
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCC-ccccccccccceeecccC
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVLRN 245 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~-L~~l~~~L~sL~~L~Ls~ 245 (982)
+++|+.|++++|.++.+| .+..+++|++|++++|.++.++.+..+++|+.|+|++|.++. .+..+..+++|+.|+|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 458999999999999998 789999999999999999999899999999999999999987 344566789999999999
Q ss_pred CcCCC--cccCCCCCCCCEEECcCCC-CCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCcc
Q 002014 246 NALTT--LRGIENLKSLEGLDISYNI-ISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (982)
Q Consensus 246 N~Ls~--L~~L~~L~sL~~LdLS~N~-Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~I 322 (982)
|.++. +..+..+++|+.|+|++|. ++.++ .+..+++|+.|++++|+++..+ .+..++.|+.+++.+|+|
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEEEECBC--
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEEEeeCccc
Confidence 99998 4578999999999999998 88875 4789999999999999998653 366789999999999998
Q ss_pred Ch
Q 002014 323 ST 324 (982)
Q Consensus 323 s~ 324 (982)
..
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 63
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.59 E-value=5.4e-15 Score=165.28 Aligned_cols=157 Identities=23% Similarity=0.238 Sum_probs=133.5
Q ss_pred CccEEEccCCccccchh-hcC-CCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecc
Q 002014 169 RLSFVSCSCNRLVIMDE-SLQ-LLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVL 243 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~-sL~-~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~L 243 (982)
.|+.|+|++|+|+.++. .+. .+++|+.|+|++|+|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 58899999999998876 455 8999999999999999875 69999999999999999999876 5667899999999
Q ss_pred cCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhh---cCCCCCcEEEecCCCCCCCcccchhHhhhcCC--Cceee
Q 002014 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFL---ASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAH--PAKLK 316 (982)
Q Consensus 244 s~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L---~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~--L~lL~ 316 (982)
++|+|+.++ .|..+++|+.|+|++|.|+.++. ..+ ..+++|+.|+|++|+|...+ ...+..++. ++.+.
T Consensus 120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV-ELIKDGNKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG-GGTC----CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEE
T ss_pred CCCcccEECHHHhCCcccCCEEECCCCcCCeeCH-HHhcCcccCCcCCEEECCCCCCCccC---HHHhhhccHhhcceEE
Confidence 999999973 78999999999999999999985 444 57999999999999998654 344555554 37799
Q ss_pred cCCCccChHHHHH
Q 002014 317 VDGKEISTRELWE 329 (982)
Q Consensus 317 LdgN~Is~~e~~~ 329 (982)
|++|++.|.....
T Consensus 196 l~~N~~~C~C~l~ 208 (361)
T 2xot_A 196 LHNNPLECDCKLY 208 (361)
T ss_dssp CCSSCEECCHHHH
T ss_pred ecCCCccCCcCcH
Confidence 9999999887544
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.58 E-value=7.5e-15 Score=153.31 Aligned_cols=156 Identities=19% Similarity=0.245 Sum_probs=135.3
Q ss_pred ccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC---CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccC
Q 002014 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (982)
Q Consensus 170 Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~---~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (982)
.+.+++++|.++.+|..+ .+.+++|+|++|.|+.++ .|..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 468999999999999765 346799999999999873 48899999999999999999886 567789999999999
Q ss_pred CcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
|.|+.++ .+..+++|+.|+|++|.|+.+++ ..+..+++|+.|+|++|.|+... ...+..++.++.++|.+|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVA---PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBC---TTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEEC---HHHhcCCCCCCEEEecCcCCc
Confidence 9999985 48999999999999999999865 67889999999999999998653 345778899999999999999
Q ss_pred hHHHHHHH
Q 002014 324 TRELWERQ 331 (982)
Q Consensus 324 ~~e~~~~~ 331 (982)
+.......
T Consensus 167 c~c~l~~l 174 (220)
T 2v70_A 167 CNCYLAWL 174 (220)
T ss_dssp CSGGGHHH
T ss_pred CCCchHHH
Confidence 87655443
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.58 E-value=1.5e-14 Score=151.70 Aligned_cols=151 Identities=22% Similarity=0.261 Sum_probs=133.5
Q ss_pred CccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccC
Q 002014 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (982)
..+.++++++.++.+|..+. ++|++|+|++|.|+.+. .|..+++|+.|+|++|.|..++. .+..+++|+.|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 46789999999999997653 89999999999999974 68899999999999999999886 456789999999999
Q ss_pred CcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
|+|+.++ .+..+++|+.|+|++|.|+.+| ..+..+++|+.|+|++|.|...+ ...+..++.++.+.|.+|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELP--RGIERLTHLTHLALDQNQLKSIP---HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCC--TTGGGCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccC--cccccCCCCCEEECCCCcCCccC---HHHHhCCCCCCEEEeeCCCcc
Confidence 9999985 4789999999999999999987 56789999999999999998654 245777899999999999999
Q ss_pred hHH
Q 002014 324 TRE 326 (982)
Q Consensus 324 ~~e 326 (982)
+..
T Consensus 173 c~c 175 (229)
T 3e6j_A 173 CEC 175 (229)
T ss_dssp TTB
T ss_pred CCc
Confidence 764
No 114
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.9e-14 Score=147.61 Aligned_cols=131 Identities=23% Similarity=0.369 Sum_probs=111.3
Q ss_pred CCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCcccc-ccccccceeecc
Q 002014 168 NRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAF-SEVSCHIVKLVL 243 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l-~~~L~sL~~L~L 243 (982)
++|++|++++|+++.++. .+..+++|++|+|++|+++.++ .+..+++|++|+|++|.|+.+++. +..+++|+.|+|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 478999999999997766 5788999999999999999876 478889999999999999988763 456789999999
Q ss_pred cCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCc
Q 002014 244 RNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 244 s~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
++|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.+.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCH-HHhccCCCccEEEecCCCeecCC
Confidence 999999875 37889999999999999998875 55788899999999999988765
No 115
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.52 E-value=6.2e-15 Score=173.30 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=101.3
Q ss_pred CCCccEEEcc-----------CCccc--cchhhcCCCCCCCEEEcCCCCCCCC--CCcCC-CCCCCEEEcC----CCCCC
Q 002014 167 WNRLSFVSCS-----------CNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLRK-CVNLKHLDLG----FNNLR 226 (982)
Q Consensus 167 L~~Lq~LdLS-----------~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~~-L~sL~~LdLS----~N~Ls 226 (982)
+++|++|+++ .|.++ .++..+..+++|++|+++.|.++.. ..+.. +++|+.|+|+ .|.++
T Consensus 341 ~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~ 420 (592)
T 3ogk_B 341 CKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT 420 (592)
T ss_dssp CTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS
T ss_pred CCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc
Confidence 4567777777 35555 2333344567777777777777652 23333 6778888885 56676
Q ss_pred Cc------cccccccccceeecccCCc--CCCc--ccC-CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCC
Q 002014 227 SI------AAFSEVSCHIVKLVLRNNA--LTTL--RGI-ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPL 295 (982)
Q Consensus 227 ~L------~~l~~~L~sL~~L~Ls~N~--Ls~L--~~L-~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpL 295 (982)
.. +.....+++|+.|+|+.|. ++.. ..+ ..+++|+.|+|++|.+++......+..+++|+.|+|++|++
T Consensus 421 ~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l 500 (592)
T 3ogk_B 421 DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF 500 (592)
T ss_dssp SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCC
T ss_pred CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCC
Confidence 53 2234456788888886533 4442 222 34788888888888887643334557788899999999887
Q ss_pred CCCcccchhHhhhcCCCceeecCCCccChH
Q 002014 296 CCSRWYRAQVFSYFAHPAKLKVDGKEISTR 325 (982)
Q Consensus 296 s~~~~~r~~v~~~l~~L~lL~LdgN~Is~~ 325 (982)
+... ....+..++.|+.++|.+|+++..
T Consensus 501 ~~~~--~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 501 SERA--IAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp BHHH--HHHHHHHCSSCCEEEEESCBCCTT
T ss_pred cHHH--HHHHHHhcCccCeeECcCCcCCHH
Confidence 4321 123345678888888888888753
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=2.5e-16 Score=161.16 Aligned_cols=162 Identities=31% Similarity=0.405 Sum_probs=139.0
Q ss_pred CccEEEccCC--ccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCC
Q 002014 169 RLSFVSCSCN--RLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (982)
Q Consensus 169 ~Lq~LdLS~N--~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N 246 (982)
.|+.+.+.++ .++.+|..+..+++|++|+|++|.++.++.+..+++|+.|+|++|.|+.++.....+++|+.|+|++|
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN 103 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence 4666666655 67778889999999999999999999999888999999999999999999887777799999999999
Q ss_pred cCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC-------cccchhHhhhcCCCceeecCC
Q 002014 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS-------RWYRAQVFSYFAHPAKLKVDG 319 (982)
Q Consensus 247 ~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~-------~~~r~~v~~~l~~L~lL~Ldg 319 (982)
+|+.++.+..+++|+.|+|++|.|+.++.+..+..+++|+.|++++|++.+. ..++...+..++.++. ||+
T Consensus 104 ~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~--Ld~ 181 (198)
T 1ds9_A 104 QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK--LDG 181 (198)
T ss_dssp ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE--ECC
T ss_pred cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE--ECC
Confidence 9999988889999999999999999987656789999999999999999765 3345556777777765 569
Q ss_pred CccChHHHHHHHH
Q 002014 320 KEISTRELWERQL 332 (982)
Q Consensus 320 N~Is~~e~~~~~~ 332 (982)
++++..++..+.+
T Consensus 182 ~~i~~~e~~~a~~ 194 (198)
T 1ds9_A 182 MPVDVDEREQANV 194 (198)
T ss_dssp GGGTTTTTTHHHH
T ss_pred cccCHHHHHHHHh
Confidence 9999888777643
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=6.1e-14 Score=143.77 Aligned_cols=128 Identities=27% Similarity=0.371 Sum_probs=112.6
Q ss_pred cEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcC
Q 002014 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNAL 248 (982)
Q Consensus 171 q~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~L 248 (982)
+.+++++|.|+.+|..+ .++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++|+|
T Consensus 13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 67899999999998765 368999999999999886 78889999999999999998875 466789999999999999
Q ss_pred CCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 249 TTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 249 s~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
+.++ .|..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.|.+
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPE-GAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeCh-hhhhcCccccEEEeCCCCeecCCcC
Confidence 9975 58999999999999999999875 5678899999999999999999854
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=3.8e-14 Score=140.54 Aligned_cols=133 Identities=19% Similarity=0.165 Sum_probs=116.8
Q ss_pred CCCccEEEccCCccc--cchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCC-ccccccccccceeecc
Q 002014 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~-L~~l~~~L~sL~~L~L 243 (982)
.++|+.|++++|.++ .+|..+..+++|++|+|++|.|+.++.+..+++|+.|+|++|.++. ++.....+++|+.|+|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 468999999999999 8998889999999999999999999889999999999999999998 5556666899999999
Q ss_pred cCCcCCCc---ccCCCCCCCCEEECcCCCCCCCchh--hhhcCCCCCcEEEecCCCCCCCc
Q 002014 244 RNNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLEGNPLCCSR 299 (982)
Q Consensus 244 s~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~Lp~L~~L~LsgNpLs~~~ 299 (982)
++|.|+.+ ..+..+++|+.|+|++|.|+.++.. ..+..+++|+.|++++|++...+
T Consensus 103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 99999986 3678899999999999999988741 36788999999999999887543
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.49 E-value=8.1e-15 Score=172.32 Aligned_cols=286 Identities=12% Similarity=0.094 Sum_probs=186.4
Q ss_pred hcCCcEEEecCCCccchHhhhhcccccccccCCCCc-------------cccccccccCCCCCCchhhHHHhcCCCCCcE
Q 002014 25 IEGSIVLKLNPAGLHYVQSRLEALRELERLLAGAPL-------------DYLRAYVSDLGDHRALEQLRRILKLLTSLKV 91 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~-------------~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~ 91 (982)
..+++.|++..+.+..+|..+..+++|+.+...... ....+..++++++ ....+|..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcE
Confidence 356677777777777777777777777766553110 0011222334333 23456777788888999
Q ss_pred EEccCCCCCCCCC-cCCCCCCCccEEEeeCCCCCc-cchhhHHhhhhhhHhhhcc-----------CCCccchhhcccch
Q 002014 92 VSALPPPARDPTP-LSLLPFCRLKVLELRGCDLST-SAAKGLLELRHTLEKIICH-----------NSTNALRHVFASRI 158 (982)
Q Consensus 92 L~Ls~N~L~~~iP-~sf~~L~nL~~LdLS~N~Lss-~~p~~L~~L~~LLeLLL~~-----------N~L~~L~~l~~~~l 158 (982)
|+|++|.+.+... ..+..+++|+.|+|+ +.+.. .++..+..+++|.++.+.+ |.+.... +
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~------~ 370 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG------L 370 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHH------H
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHH------H
Confidence 9998888664333 335778889999888 44443 3333445566666676662 2222110 0
Q ss_pred hcccCCCCCCCccEEEccCCccc-cchhhcCC-CCCCCEEEcC----CCCCCCCC-------CcCCCCCCCEEEcCCCC-
Q 002014 159 VEIKDSPQWNRLSFVSCSCNRLV-IMDESLQL-LPAVETLDLS----RNKFAKVD-------NLRKCVNLKHLDLGFNN- 224 (982)
Q Consensus 159 ~~L~~l~~L~~Lq~LdLS~N~Lt-~LP~sL~~-L~~L~~LdLS----~N~Lt~l~-------~L~~L~sL~~LdLS~N~- 224 (982)
..+ ...+++|++|+++.|.++ ..+..+.. +++|+.|+++ .|.++..+ .+..+++|+.|+|++|.
T Consensus 371 ~~l--~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~ 448 (592)
T 3ogk_B 371 IAL--AQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448 (592)
T ss_dssp HHH--HHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred HHH--HhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence 000 013678999999999998 33344544 8899999996 77888642 25568999999998643
Q ss_pred -CCCc--cccccccccceeecccCCcCCC--cc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCC
Q 002014 225 -LRSI--AAFSEVSCHIVKLVLRNNALTT--LR-GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 225 -Ls~L--~~l~~~L~sL~~L~Ls~N~Ls~--L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
++.. ..+...+++|+.|+|++|.++. ++ .+..+++|+.|+|++|.|+.......+..+++|+.|+|++|+++..
T Consensus 449 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp GCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4432 2234457899999999999987 33 4578899999999999986532223456799999999999998865
Q ss_pred cccchhHhhhcCCCceeecCCCcc
Q 002014 299 RWYRAQVFSYFAHPAKLKVDGKEI 322 (982)
Q Consensus 299 ~~~r~~v~~~l~~L~lL~LdgN~I 322 (982)
.. ......++.+....++.++.
T Consensus 529 ~~--~~l~~~~p~l~~~~~~~~~~ 550 (592)
T 3ogk_B 529 GQ--DLMQMARPYWNIELIPSRRV 550 (592)
T ss_dssp CT--TGGGGCCTTEEEEEECCC--
T ss_pred HH--HHHHHhCCCcEEEEecCccc
Confidence 31 12234566677777766543
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=8.8e-14 Score=142.03 Aligned_cols=129 Identities=24% Similarity=0.297 Sum_probs=113.9
Q ss_pred ccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC---CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccC
Q 002014 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (982)
Q Consensus 170 Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~---~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (982)
.+.|++++|.|+.+|..+. .+|++|+|++|.|+.++ .+..+++|+.|+|++|.|+++.+ .+..+++|+.|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3789999999999998654 38999999999999875 28899999999999999999854 666789999999999
Q ss_pred CcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
|+|+.++ .+..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|+|.|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCccCcCcc
Confidence 9999974 58899999999999999998754 6788999999999999999998754
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=1.5e-14 Score=176.84 Aligned_cols=218 Identities=16% Similarity=0.092 Sum_probs=106.8
Q ss_pred cEEEecCCCccchHhhhhcccccccccCCCCccccccccccCCCCCCchhhHHHhcCCCCCcEEEccCCCCCCCCCcCCC
Q 002014 29 IVLKLNPAGLHYVQSRLEALRELERLLAGAPLDYLRAYVSDLGDHRALEQLRRILKLLTSLKVVSALPPPARDPTPLSLL 108 (982)
Q Consensus 29 ~~L~L~~~~L~~Lp~~L~~L~~Le~L~~~~~~~~l~l~~LdLs~n~~L~~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~ 108 (982)
..|.|..+.+..++..+....+|..+. +..+++..+. +...+..+..+++|+.|+|++|.+. .+|..+.
T Consensus 176 ~~l~L~~n~~~~~~~~~l~~l~Ls~~~---------i~~~~~~~n~-~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~ 244 (727)
T 4b8c_D 176 PKIELFANGKDEANQALLQHKKLSQYS---------IDEDDDIENR-MVMPKDSKYDDQLWHALDLSNLQIF-NISANIF 244 (727)
T ss_dssp --------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGG
T ss_pred ceEEeeCCCCCcchhhHhhcCccCccc---------ccCccccccc-eecChhhhccCCCCcEEECCCCCCC-CCChhhc
Confidence 445555566655554433333333221 1223333332 2345667777777888888777776 4555556
Q ss_pred CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcC
Q 002014 109 PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQ 188 (982)
Q Consensus 109 ~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~ 188 (982)
.+++|++|+|++|.|+ .+|..|..| ++|++|+|++|.|+.+|..|.
T Consensus 245 ~l~~L~~L~Ls~N~l~-~lp~~~~~l---------------------------------~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLT-ELPAEIKNL---------------------------------SNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp GCCSCSCCBCTTSCCS-CCCGGGGGG---------------------------------TTCCEEECTTSCCSSCCSSGG
T ss_pred CCCCCCEEEeeCCcCc-ccChhhhCC---------------------------------CCCCEEeCcCCcCCccChhhc
Confidence 7777888888877776 355555443 479999999999999999999
Q ss_pred CCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccc-ccccc-ccceeecccCCcCCCcccCCCCCCCCEEEC
Q 002014 189 LLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAA-FSEVS-CHIVKLVLRNNALTTLRGIENLKSLEGLDI 265 (982)
Q Consensus 189 ~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L-~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdL 265 (982)
.+++|++|+|++|.|+.+| .|..+++|+.|+|++|.|++.++ .+..+ ..+..|+|++|.++... ...|..|++
T Consensus 291 ~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~----p~~l~~l~l 366 (727)
T 4b8c_D 291 SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL----PHERRFIEI 366 (727)
T ss_dssp GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC----CCC------
T ss_pred CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC----ccccceeEe
Confidence 9999999999999999987 79999999999999999997654 22221 23345789999987631 245777788
Q ss_pred cCC--------CCCCCchhhhhcCCCCCcEEEecCCCCC
Q 002014 266 SYN--------IISTFSELEFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 266 S~N--------~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs 296 (982)
+.| .|..... ..+..+..+....++.|-++
T Consensus 367 ~~n~~~~~~~~~l~~~~~-~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTE-HLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred ecccccccccCCcccccc-chhhcccccceeeeeccccc
Confidence 777 1222111 12233444555566666654
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=7.1e-14 Score=140.23 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=79.9
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCC
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNN 246 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N 246 (982)
+.+|+.|++++|+++.+|......++|+.|+|++|.|+.++.+..+++|+.|+|++|.|+.+++.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--------------- 82 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG--------------- 82 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSC---------------
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcc---------------
Confidence 34555555555555555332222235555555555555544444555555555555544444321
Q ss_pred cCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccC
Q 002014 247 ALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 247 ~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
.+..+++|+.|+|++|.|+.++.+..+..+++|+.|++++|+++..+.++..++..++.++.+++.+|.+.
T Consensus 83 ------~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 83 ------LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ------HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ------hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 13556677777777777777664446677777788888888777666555556777777777777666554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=1.2e-13 Score=134.32 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=100.8
Q ss_pred CCCccEEEccCCccc--cchhhcCCCCCCCEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCC-ccccccccccceeecc
Q 002014 167 WNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRS-IAAFSEVSCHIVKLVL 243 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~-L~~l~~~L~sL~~L~L 243 (982)
.++|+.|++++|.++ .+|..+..+++|++|++++|.++.++.+..+++|+.|+|++|.++. ++.....+++|+.|+|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 357999999999998 8888889999999999999999988888889999999999999988 6655555778888888
Q ss_pred cCCcCCCc---ccCCCCCCCCEEECcCCCCCCCchh--hhhcCCCCCcEEEec
Q 002014 244 RNNALTTL---RGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLLNLWLE 291 (982)
Q Consensus 244 s~N~Ls~L---~~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~Lp~L~~L~Ls 291 (982)
++|.|+.+ ..+..+++|+.|++++|.++.++.. ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888775 4667777788888888877776542 346677777777765
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=1.2e-13 Score=137.00 Aligned_cols=134 Identities=20% Similarity=0.186 Sum_probs=103.2
Q ss_pred cCCCCCcEEEccCCCCC-CCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhccc
Q 002014 84 KLLTSLKVVSALPPPAR-DPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIK 162 (982)
Q Consensus 84 ~~L~~Lk~L~Ls~N~L~-~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~ 162 (982)
...++|+.|+|++|.+. +.+|..+..+++|++|+|++|.|++. ..+
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~------------------------------- 67 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNL------------------------------- 67 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSC-------------------------------
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhh-------------------------------
Confidence 44578999999999987 67788888899999999999998763 111
Q ss_pred CCCCCCCccEEEccCCcccc-chhhcCCCCCCCEEEcCCCCCCCCC---CcCCCCCCCEEEcCCCCCCCccc----cccc
Q 002014 163 DSPQWNRLSFVSCSCNRLVI-MDESLQLLPAVETLDLSRNKFAKVD---NLRKCVNLKHLDLGFNNLRSIAA----FSEV 234 (982)
Q Consensus 163 ~l~~L~~Lq~LdLS~N~Lt~-LP~sL~~L~~L~~LdLS~N~Lt~l~---~L~~L~sL~~LdLS~N~Ls~L~~----l~~~ 234 (982)
..+++|++|++++|.++. +|..+..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.++.++. .+..
T Consensus 68 --~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 145 (168)
T 2ell_A 68 --PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKL 145 (168)
T ss_dssp --CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTT
T ss_pred --ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHh
Confidence 235688999999999986 7777777889999999999888863 67778888888888888887765 4445
Q ss_pred cccceeecccCCcCCCcc
Q 002014 235 SCHIVKLVLRNNALTTLR 252 (982)
Q Consensus 235 L~sL~~L~Ls~N~Ls~L~ 252 (982)
+++|+.|++++|.+..++
T Consensus 146 l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 146 LPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CSSCCEETTEETTSCBCC
T ss_pred CccCcEecCCCCChhhcc
Confidence 566666666666665543
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.44 E-value=7.2e-13 Score=132.63 Aligned_cols=129 Identities=22% Similarity=0.374 Sum_probs=112.6
Q ss_pred CccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccC
Q 002014 169 RLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRN 245 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~ 245 (982)
..+.+++++|+++.+|..+ .++|+.|++++|.++.++ .+..+++|+.|+|++|.|+.+++ .+..+++|+.|+|++
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 3578999999999998654 479999999999999876 47889999999999999998886 346789999999999
Q ss_pred CcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 246 NALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 246 N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
|.|+.++ .+..+++|+.|+|++|.|+.++. ..+..+++|+.|+|++|++.|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCH-HHhcCCcccCEEEecCCCeeccCc
Confidence 9999975 47889999999999999999875 556889999999999999998863
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=2.7e-14 Score=167.71 Aligned_cols=158 Identities=16% Similarity=0.064 Sum_probs=102.1
Q ss_pred CCCccEEEc---------cCCccc--cchhhcCCCCCCCEEEcCCCCCCCC--CCcC-CCCCCCEEEcC--C----CCCC
Q 002014 167 WNRLSFVSC---------SCNRLV--IMDESLQLLPAVETLDLSRNKFAKV--DNLR-KCVNLKHLDLG--F----NNLR 226 (982)
Q Consensus 167 L~~Lq~LdL---------S~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~-~L~sL~~LdLS--~----N~Ls 226 (982)
+++|+.|++ ..+.++ .+......+++|+.|.+..|.++.. ..+. .+++|+.|+|+ + |.++
T Consensus 337 ~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~ 416 (594)
T 2p1m_B 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT 416 (594)
T ss_dssp CTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT
T ss_pred CCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc
Confidence 456777777 334554 1212223467788887777777652 2333 46788888888 4 5565
Q ss_pred Ccc------ccccccccceeecccCCcCCCc--ccCCC-CCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCC
Q 002014 227 SIA------AFSEVSCHIVKLVLRNNALTTL--RGIEN-LKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCC 297 (982)
Q Consensus 227 ~L~------~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~-L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~ 297 (982)
..+ .....+++|+.|+|++ .++.. +.+.. +++|+.|+|++|.+++.........+++|+.|+|++|+++.
T Consensus 417 ~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~ 495 (594)
T 2p1m_B 417 LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD 495 (594)
T ss_dssp CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH
T ss_pred CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH
Confidence 332 2344567889999876 55542 33333 78899999999998764332223668999999999999842
Q ss_pred CcccchhHhhhcCCCceeecCCCccChHHH
Q 002014 298 SRWYRAQVFSYFAHPAKLKVDGKEISTREL 327 (982)
Q Consensus 298 ~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~ 327 (982)
.. .......++.|+.++|.+|+++....
T Consensus 496 ~~--~~~~~~~l~~L~~L~l~~~~~~~~~~ 523 (594)
T 2p1m_B 496 KA--LLANASKLETMRSLWMSSCSVSFGAC 523 (594)
T ss_dssp HH--HHHTGGGGGGSSEEEEESSCCBHHHH
T ss_pred HH--HHHHHHhCCCCCEEeeeCCCCCHHHH
Confidence 21 11234457889999999999965443
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=1.6e-13 Score=137.62 Aligned_cols=135 Identities=17% Similarity=0.169 Sum_probs=97.2
Q ss_pred HHhhhhhhHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-C-
Q 002014 131 LLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-N- 208 (982)
Q Consensus 131 L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~- 208 (982)
+.++.++..+.+.+|.+..++... . ..++|++|++++|.|+.+ ..+..+++|++|+|++|.|+.++ .
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~-~---------~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLG-A---------TLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGG-G---------GTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred cCCcCCceEEEeeCCCCchhHHhh-h---------cCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 445666777888888777664321 1 124899999999999988 68899999999999999999886 3
Q ss_pred cCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCchh--hhhcCCCCCc
Q 002014 209 LRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFSEL--EFLASLPYLL 286 (982)
Q Consensus 209 L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l--~~L~~Lp~L~ 286 (982)
+..+++|+.|+|++|.|..++... .+..+++|+.|+|++|.++.++.. ..+..+++|+
T Consensus 84 ~~~l~~L~~L~L~~N~i~~~~~~~--------------------~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 84 DQALPDLTELILTNNSLVELGDLD--------------------PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp HHHCTTCCEEECCSCCCCCGGGGG--------------------GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred hhcCCCCCEEECCCCcCCcchhhH--------------------hhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccc
Confidence 478899999999999988776511 133455566666666666555421 1356677777
Q ss_pred EEEecCCCCC
Q 002014 287 NLWLEGNPLC 296 (982)
Q Consensus 287 ~L~LsgNpLs 296 (982)
.|++++|++.
T Consensus 144 ~Ld~~~n~~~ 153 (176)
T 1a9n_A 144 VLDFQKVKLK 153 (176)
T ss_dssp EETTEECCHH
T ss_pred eeCCCcCCHH
Confidence 7777777654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=3e-12 Score=131.16 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=122.4
Q ss_pred CEEEcCCCCCCCCCCcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCC
Q 002014 194 ETLDLSRNKFAKVDNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIIS 271 (982)
Q Consensus 194 ~~LdLS~N~Lt~l~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls 271 (982)
+.+++++|.++.+|.- -.++|+.|+|++|.|+.++..+..+++|+.|+|++|.|+.++ .|..+++|+.|+|++|.|+
T Consensus 13 ~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp TEEECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 6799999999998731 236899999999999999887778899999999999999985 5899999999999999999
Q ss_pred CCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHHHHHHHHhh-cCCCCCccccCCC
Q 002014 272 TFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWERQLIIARR-QKRPAGFGFYSPA 350 (982)
Q Consensus 272 ~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~~~l~~~~-~~~~~~~~~~~P~ 350 (982)
.+++ ..+..+++|+.|+|++|.|+..+ ...|..++.++.++|.+|++.+.........+... ...+....|..|.
T Consensus 92 ~i~~-~~f~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~ 167 (193)
T 2wfh_A 92 CIPP-RTFDGLKSLRLLSLHGNDISVVP---EGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPG 167 (193)
T ss_dssp BCCT-TTTTTCTTCCEEECCSSCCCBCC---TTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESG
T ss_pred EeCH-HHhCCCCCCCEEECCCCCCCeeC---hhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCch
Confidence 9875 67889999999999999998554 34577789999999999999887654443333222 2223334455554
Q ss_pred C
Q 002014 351 K 351 (982)
Q Consensus 351 ~ 351 (982)
.
T Consensus 168 ~ 168 (193)
T 2wfh_A 168 E 168 (193)
T ss_dssp G
T ss_pred H
Confidence 3
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=9e-13 Score=128.06 Aligned_cols=129 Identities=26% Similarity=0.190 Sum_probs=111.4
Q ss_pred CCCCCCEEEcCCCCCC--CCC-CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcCCC-cc-cCCCCCCCCEE
Q 002014 189 LLPAVETLDLSRNKFA--KVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTT-LR-GIENLKSLEGL 263 (982)
Q Consensus 189 ~L~~L~~LdLS~N~Lt--~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~-L~-~L~~L~sL~~L 263 (982)
..++|+.|++++|.++ .++ .+..+++|+.|+|++|.++.+ ..+..+++|+.|+|++|.|+. ++ .+..+++|+.|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4578999999999998 565 568899999999999999998 555668999999999999999 65 45569999999
Q ss_pred ECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecC
Q 002014 264 DISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVD 318 (982)
Q Consensus 264 dLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~Ld 318 (982)
+|++|.|+.++....+..+++|+.|++++|+++..+.++...+..++.++.+++.
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 9999999997655678999999999999999998776666778889999888765
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=2.7e-13 Score=159.25 Aligned_cols=238 Identities=13% Similarity=0.038 Sum_probs=116.5
Q ss_pred hcCCcEEEecCCCccch-Hhhhh-cccccccccCCCCc------------cccccccccCCCCCCc----hhhHHHhcCC
Q 002014 25 IEGSIVLKLNPAGLHYV-QSRLE-ALRELERLLAGAPL------------DYLRAYVSDLGDHRAL----EQLRRILKLL 86 (982)
Q Consensus 25 L~sl~~L~L~~~~L~~L-p~~L~-~L~~Le~L~~~~~~------------~~l~l~~LdLs~n~~L----~~Lp~~L~~L 86 (982)
..+++.|+++.+.+... +..+. .+++|+.|...... .+-.+..+++++|... ..++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 44667777777765532 22232 34555555442110 1223455677766522 2234444467
Q ss_pred CCCcEEEccCCCCCCCCCcC----CCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCC----------------
Q 002014 87 TSLKVVSALPPPARDPTPLS----LLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNS---------------- 146 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~s----f~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~---------------- 146 (982)
++|+.|+|++|. ....+.. +..+++|++|+|++|.-...+|..+..+++|.++.+..+.
T Consensus 184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 788888888776 2111122 2345888888888883222356666666665555432221
Q ss_pred ----Cccc---hhhcccchhcccCCCCCCCccEEEccCCccc--cchhhcCCCCCCCEEEcCCCCCCC--CCC-cCCCCC
Q 002014 147 ----TNAL---RHVFASRIVEIKDSPQWNRLSFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAK--VDN-LRKCVN 214 (982)
Q Consensus 147 ----L~~L---~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~--l~~-L~~L~s 214 (982)
+..+ .......+..+ ...+++|+.|++++|.++ .++..+..+++|+.|++++| +.. ++. ...+++
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~--~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGG--HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred cCCCcccccCCcccchhhHHHH--HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 0101 00000000000 013467888888888876 23334567778888888776 321 111 123566
Q ss_pred CCEEEcC---------CCCCCCc--cccccccccceeecccCCcCCCc--ccC-CCCCCCCEEECc
Q 002014 215 LKHLDLG---------FNNLRSI--AAFSEVSCHIVKLVLRNNALTTL--RGI-ENLKSLEGLDIS 266 (982)
Q Consensus 215 L~~LdLS---------~N~Ls~L--~~l~~~L~sL~~L~Ls~N~Ls~L--~~L-~~L~sL~~LdLS 266 (982)
|+.|+|. .+.++.. ..+...+++|+.|.+..|.++.. ..+ ..+++|+.|+|+
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~ 405 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLC 405 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEee
Confidence 6666662 2233321 11222245555555555555442 122 134555555555
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=1.5e-12 Score=159.32 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=100.1
Q ss_pred CCCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC-CcCCCCCCCEEEcCCCCCCCccccccccccceeeccc
Q 002014 166 QWNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD-NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (982)
Q Consensus 166 ~L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~-~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (982)
.++.|+.|+|++|.|..+|..+..+++|++|+|++|.|+.+| .|..+++|+.|+|++|.|+.+|..+..+++|+.|+|+
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC
Confidence 456788888888888888877778888888888888888776 5788888888888888888887767777888888888
Q ss_pred CCcCCCcc-cCCCCCCCCEEECcCCCCCCCchhhhhcCCC-CCcEEEecCCCCCCC
Q 002014 245 NNALTTLR-GIENLKSLEGLDISYNIISTFSELEFLASLP-YLLNLWLEGNPLCCS 298 (982)
Q Consensus 245 ~N~Ls~L~-~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp-~L~~L~LsgNpLs~~ 298 (982)
+|.|+.+| .|..+++|+.|+|++|.|++.++ ..+..+. .+..|+|++|.++..
T Consensus 302 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 302 DNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL-KILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SSCCCCCCSSTTSCTTCCCEECTTSCCCSHHH-HHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCCccChhhhcCCCccEEeCCCCccCCCCh-HHHhhcchhhhHHhhccCcccCc
Confidence 88888875 67888888888888888887543 3332221 122367788877644
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=1.2e-11 Score=126.13 Aligned_cols=131 Identities=21% Similarity=0.280 Sum_probs=112.8
Q ss_pred CEEEcCCCCCCCCCC-cCCCCCCCEEEcCCCCCCCccc--cccccccceeecccCCcCCCc-c-cCCCCCCCCEEECcCC
Q 002014 194 ETLDLSRNKFAKVDN-LRKCVNLKHLDLGFNNLRSIAA--FSEVSCHIVKLVLRNNALTTL-R-GIENLKSLEGLDISYN 268 (982)
Q Consensus 194 ~~LdLS~N~Lt~l~~-L~~L~sL~~LdLS~N~Ls~L~~--l~~~L~sL~~L~Ls~N~Ls~L-~-~L~~L~sL~~LdLS~N 268 (982)
+.|++++|.++.+|. +. .+|+.|+|++|.|+.+++ .+..+++|+.|+|++|.|+.+ + .+..+++|+.|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 789999999999874 33 389999999999999886 367789999999999999997 3 7899999999999999
Q ss_pred CCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCccChHHHHHH
Q 002014 269 IISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEISTRELWER 330 (982)
Q Consensus 269 ~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~Is~~e~~~~ 330 (982)
+|+.+++ ..+..+++|+.|+|++|.|+... ...+..++.++.++|.+|++.+......
T Consensus 89 ~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~c~c~l~~ 146 (192)
T 1w8a_A 89 KIKEISN-KMFLGLHQLKTLNLYDNQISCVM---PGSFEHLNSLTSLNLASNPFNCNCHLAW 146 (192)
T ss_dssp CCCEECS-SSSTTCTTCCEEECCSSCCCEEC---TTSSTTCTTCCEEECTTCCBCCSGGGHH
T ss_pred cCCccCH-HHhcCCCCCCEEECCCCcCCeeC---HHHhhcCCCCCEEEeCCCCccCcCcchH
Confidence 9999875 56889999999999999998542 3456778899999999999998765443
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=9e-15 Score=149.54 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=21.7
Q ss_pred CCCCCCCCEEECcCCCCCCCch---------hhhhcCCCCCcEEEecCCCCCCC
Q 002014 254 IENLKSLEGLDISYNIISTFSE---------LEFLASLPYLLNLWLEGNPLCCS 298 (982)
Q Consensus 254 L~~L~sL~~LdLS~N~Ls~l~~---------l~~L~~Lp~L~~L~LsgNpLs~~ 298 (982)
+..+++|+.|++++|.+....+ ...+..+++|+.|+ +|+++..
T Consensus 136 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence 3445555555555555443211 02245666677665 6666543
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.27 E-value=2.1e-12 Score=142.18 Aligned_cols=200 Identities=13% Similarity=0.113 Sum_probs=100.8
Q ss_pred CCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccC----CCccchhhcccchhcc
Q 002014 86 LTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHN----STNALRHVFASRIVEI 161 (982)
Q Consensus 86 L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N----~L~~L~~l~~~~l~~L 161 (982)
+++|+.|+|.+ .++.+.+.+|.++++|+.|+|++|.+..+.+..|..+..+..+....+ ....+....+.....+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 77777777766 666666677777777777777777777666666655443332222111 0011111000000000
Q ss_pred c-----------------CCCCCCCccEEEccCCccccchhhc-CCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcC
Q 002014 162 K-----------------DSPQWNRLSFVSCSCNRLVIMDESL-QLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLG 221 (982)
Q Consensus 162 ~-----------------~l~~L~~Lq~LdLS~N~Lt~LP~sL-~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS 221 (982)
. ......++..+.+.++-...-...+ ..+++|+.|+|++|.++.++ .|.++.+|+.|+|.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0 0001122333333322111000011 12556666666666666654 46666666666666
Q ss_pred CCCCCCccc-cccccccce-eecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEE
Q 002014 222 FNNLRSIAA-FSEVSCHIV-KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (982)
Q Consensus 222 ~N~Ls~L~~-l~~~L~sL~-~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~ 289 (982)
.| ++.++. .+..+++|+ .|.|.+ .++.++ .|.+|++|+.|+|+.|.++.++. ..+.++++|+.|+
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~-~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGD-ELFGNGVPSKLIY 327 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECT-TTTCTTCCCCEEE
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccch-hhhcCCcchhhhc
Confidence 65 555554 344455666 666665 555552 56666666666666666666554 4556666666654
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=3.1e-11 Score=120.70 Aligned_cols=109 Identities=14% Similarity=0.124 Sum_probs=69.9
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcccCCCC
Q 002014 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEIKDSPQ 166 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L~~l~~ 166 (982)
++|+.|+|++|.+.+..+..|..+++|++|+|++|.|++..+..+. .
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~---------------------------------~ 74 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD---------------------------------K 74 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---------------------------------T
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc---------------------------------C
Confidence 5677777777777666666666677777777777776653332222 2
Q ss_pred CCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCc
Q 002014 167 WNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSI 228 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L 228 (982)
+++|++|++++|+|+.+|. .+..+++|++|+|++|.|+.++ .+..+++|+.|+|++|.+...
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 3467777777777776554 3566777777777777777664 255667777777777766543
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.22 E-value=7.7e-12 Score=137.70 Aligned_cols=234 Identities=13% Similarity=0.076 Sum_probs=155.6
Q ss_pred hcCCcEEEecCCCcc-------chHh-hhhcccccccccCCCCcc--------ccccccccCCCCCCchhhHH-HhcCCC
Q 002014 25 IEGSIVLKLNPAGLH-------YVQS-RLEALRELERLLAGAPLD--------YLRAYVSDLGDHRALEQLRR-ILKLLT 87 (982)
Q Consensus 25 L~sl~~L~L~~~~L~-------~Lp~-~L~~L~~Le~L~~~~~~~--------~l~l~~LdLs~n~~L~~Lp~-~L~~L~ 87 (982)
+.+++.|+|+.+.+. .++. .+..+.. ..++...... +..+..++|.+ .+..+++ .|.+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~-~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~ 124 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMA-NFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCD 124 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECT-TEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccc-cccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCc
Confidence 677899999999988 3333 1111111 1233333334 45556677776 3555554 799999
Q ss_pred CCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCC----CccchhhHHhhhhhh------------HhhhccC-CCccc
Q 002014 88 SLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDL----STSAAKGLLELRHTL------------EKIICHN-STNAL 150 (982)
Q Consensus 88 ~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~L----ss~~p~~L~~L~~LL------------eLLL~~N-~L~~L 150 (982)
+|+.|+|.+|.+..+.+.+|.++.++..|.+..+.. .......|.++..+. ......+ ....+
T Consensus 125 ~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 125 NLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp TCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGC
T ss_pred ccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcccc
Confidence 999999999999988889999988887777655211 111111222221111 0000000 00000
Q ss_pred hhhcc-c-----chhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCC-EEEc
Q 002014 151 RHVFA-S-----RIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLK-HLDL 220 (982)
Q Consensus 151 ~~l~~-~-----~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~-~LdL 220 (982)
..... + ....+. ..+++|+.|+|++|+++.+|. .|..+++|+.|+|++| ++.++ +|.++.+|+ .|.|
T Consensus 205 ~~l~~~~~l~~~~~~~l~--~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l 281 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIR--DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL 281 (329)
T ss_dssp SEEEEEECCCHHHHHHHH--HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE
T ss_pred ceEEEeeeecHHHHHHHH--HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE
Confidence 00000 0 000000 025799999999999999987 7999999999999998 88775 799999999 9999
Q ss_pred CCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCCCEEEC
Q 002014 221 GFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDI 265 (982)
Q Consensus 221 S~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdL 265 (982)
.. .++.++. .+..+++|+.|+|.+|+++.++ .|.++++|+.|+.
T Consensus 282 ~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 282 PA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 98 7888875 6677899999999999999984 7999999999864
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=8.4e-11 Score=117.86 Aligned_cols=105 Identities=25% Similarity=0.394 Sum_probs=70.5
Q ss_pred ccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCc
Q 002014 170 LSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (982)
Q Consensus 170 Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~ 247 (982)
.+.|++++|.|+.+|..+ .++|++|+|++|.|+.++ .|..+++ |+.|+|++|+
T Consensus 11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~-----------------------L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQ-----------------------LTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTT-----------------------CSEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCccc-----------------------CCEEECCCCC
Confidence 455666666666665443 245555555555555542 3444444 5555555555
Q ss_pred CCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 248 LTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 248 Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
|+.++ .|..+++|+.|+|++|+|+.+++ ..+..+++|+.|+|++|+|.|.|.
T Consensus 66 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPR-GAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCBCTTBG
T ss_pred cCccChhhccCCCCCCEEECCCCccCEeCH-HHhcCCCCCCEEEeCCCCCCCCch
Confidence 55543 35778899999999999998875 568889999999999999999874
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.16 E-value=1.3e-10 Score=117.10 Aligned_cols=104 Identities=22% Similarity=0.385 Sum_probs=70.0
Q ss_pred cEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCcC
Q 002014 171 SFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNAL 248 (982)
Q Consensus 171 q~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~L 248 (982)
+.+++++|+|+.+|..+. ++|+.|+|++|+|+.++ .|..+ ++|+.|+|++|+|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l-----------------------~~L~~L~Ls~N~l 69 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHL-----------------------VNLQQLYFNSNKL 69 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTC-----------------------TTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCC-----------------------cCCCEEECCCCCC
Confidence 456666666666655432 45555555555555542 34444 4555555555555
Q ss_pred CCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcc
Q 002014 249 TTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRW 300 (982)
Q Consensus 249 s~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~ 300 (982)
+.++ .+..+++|+.|+|++|+|+.++. ..+..+++|+.|+|++|+|.|.+.
T Consensus 70 ~~i~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 70 TAIPTGVFDKLTQLTQLDLNDNHLKSIPR-GAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccChhHhCCcchhhEEECCCCccceeCH-HHhccccCCCEEEeCCCCcccccc
Confidence 5543 25778899999999999998875 558889999999999999999874
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.09 E-value=3.3e-10 Score=113.52 Aligned_cols=103 Identities=20% Similarity=0.163 Sum_probs=76.6
Q ss_pred hHhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccc-hhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCC
Q 002014 138 LEKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVN 214 (982)
Q Consensus 138 LeLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~s 214 (982)
..+.+.+|.+..++..+ .++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.++ .|..+++
T Consensus 12 ~~l~~s~n~l~~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TEEECTTSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CEEEeCCCCcCccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCC
Confidence 34556677666665422 25899999999999977 557999999999999999999986 4678888
Q ss_pred CCEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCC
Q 002014 215 LKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTF 273 (982)
Q Consensus 215 L~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l 273 (982)
|+.|+|++|+|+.+++. .+..+++|+.|+|++|.+...
T Consensus 80 L~~L~L~~N~l~~~~~~---------------------~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 80 LTQLSLNDNQLKSIPRG---------------------AFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCEEECCSSCCCCCCTT---------------------TTTTCTTCCEEECCSSCBCTT
T ss_pred CCEEECCCCccCEeCHH---------------------HhcCCCCCCEEEeCCCCCCCC
Confidence 88888888887766542 244556666777777766644
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.08 E-value=4.6e-10 Score=113.15 Aligned_cols=103 Identities=19% Similarity=0.139 Sum_probs=76.6
Q ss_pred HhhhccCCCccchhhcccchhcccCCCCCCCccEEEccCCccccc-hhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCC
Q 002014 139 EKIICHNSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIM-DESLQLLPAVETLDLSRNKFAKVD--NLRKCVNL 215 (982)
Q Consensus 139 eLLL~~N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~L-P~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL 215 (982)
.+.+.+|.+..++..+ .++|++|+|++|+|+.+ |..|..+++|++|+|++|+|+.++ .|..+++|
T Consensus 16 ~l~~~~n~l~~iP~~~------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 16 LVNCQNIRLASVPAGI------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp EEECCSSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEEeCCCCCCccCCCc------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 3445666666555422 25899999999999977 558999999999999999999986 36778888
Q ss_pred CEEEcCCCCCCCccccccccccceeecccCCcCCCcccCCCCCCCCEEECcCCCCCCCc
Q 002014 216 KHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNALTTLRGIENLKSLEGLDISYNIISTFS 274 (982)
Q Consensus 216 ~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~ 274 (982)
+.|+|++|.|+.+++. .+..+++|+.|+|++|.+...+
T Consensus 84 ~~L~L~~N~l~~l~~~---------------------~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRG---------------------AFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CEEECCSSCCCCCCTT---------------------TTTTCTTCSEEECCSSCBCTTB
T ss_pred hEEECCCCccceeCHH---------------------HhccccCCCEEEeCCCCccccc
Confidence 8888888877766542 2455667777777777776554
No 141
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.05 E-value=5e-11 Score=134.76 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=95.9
Q ss_pred CCccEEEccCCcccc--chhhcCCCCCCCEEEcCCCCCCCCC--C----c-CCCCCCCEEEcCCCCCCCcc-----cccc
Q 002014 168 NRLSFVSCSCNRLVI--MDESLQLLPAVETLDLSRNKFAKVD--N----L-RKCVNLKHLDLGFNNLRSIA-----AFSE 233 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt~--LP~sL~~L~~L~~LdLS~N~Lt~l~--~----L-~~L~sL~~LdLS~N~Ls~L~-----~l~~ 233 (982)
++|+.|+|++|.|+. +......+++|+.|+|++|.|+... . + ...++|+.|+|++|.|+... ....
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 467788888887762 2222233457788888888776531 1 2 34577888888888876422 2223
Q ss_pred ccccceeecccCCcCCCc------ccCCCCCCCCEEECcCCCCCCCchh---hhhcCCCCCcEEEecCCCCCCCcccchh
Q 002014 234 VSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSEL---EFLASLPYLLNLWLEGNPLCCSRWYRAQ 304 (982)
Q Consensus 234 ~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~~LdLS~N~Ls~l~~l---~~L~~Lp~L~~L~LsgNpLs~~~~~r~~ 304 (982)
.+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|+..... ..+..+++|+.|+|++|+|+... ..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g---~~ 257 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG---RQ 257 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH---HH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH---HH
Confidence 457788888888888752 3566778899999999998864321 23456788999999999987542 12
Q ss_pred HhhhcCC-----Cceee--cCCCccCh
Q 002014 305 VFSYFAH-----PAKLK--VDGKEIST 324 (982)
Q Consensus 305 v~~~l~~-----L~lL~--LdgN~Is~ 324 (982)
.+..+.. ++.+. ++++.++.
T Consensus 258 ~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 258 VLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHCC------CEEECCCC----CHH
T ss_pred HHHHHhcCCCccchhhHhhhcCCccCH
Confidence 2222221 55555 66666654
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.03 E-value=4.2e-10 Score=124.06 Aligned_cols=106 Identities=25% Similarity=0.355 Sum_probs=69.8
Q ss_pred EEEccCC-ccccchhhcCCCCCCCEEEcCC-CCCCCCC--CcCCCCCCCEEEcCCCCCCCccccccccccceeecccCCc
Q 002014 172 FVSCSCN-RLVIMDESLQLLPAVETLDLSR-NKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLRNNA 247 (982)
Q Consensus 172 ~LdLS~N-~Lt~LP~sL~~L~~L~~LdLS~-N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls~N~ 247 (982)
.++++++ +|+.+|. +..+++|+.|+|++ |.|+.++ .|..+++|+.|+|++|+|+++++.
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------------- 74 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---------------- 74 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT----------------
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH----------------
Confidence 4566666 6666666 66666666666664 6666553 355555555555555555544431
Q ss_pred CCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCccc
Q 002014 248 LTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWY 301 (982)
Q Consensus 248 Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~ 301 (982)
.|..+++|+.|+|++|+|+.++. ..+..++ |+.|+|.+|+|.|.|.+
T Consensus 75 -----~~~~l~~L~~L~l~~N~l~~~~~-~~~~~~~-L~~l~l~~N~~~c~c~l 121 (347)
T 2ifg_A 75 -----AFHFTPRLSRLNLSFNALESLSW-KTVQGLS-LQELVLSGNPLHCSCAL 121 (347)
T ss_dssp -----GGGSCSCCCEEECCSSCCSCCCS-TTTCSCC-CCEEECCSSCCCCCGGG
T ss_pred -----HhcCCcCCCEEeCCCCccceeCH-HHcccCC-ceEEEeeCCCccCCCcc
Confidence 35667788888888888888764 4445554 99999999999998854
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.01 E-value=1.1e-09 Score=124.93 Aligned_cols=232 Identities=11% Similarity=0.111 Sum_probs=153.5
Q ss_pred ccccCCCCCCchhhHH-HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhcc
Q 002014 66 YVSDLGDHRALEQLRR-ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICH 144 (982)
Q Consensus 66 ~~LdLs~n~~L~~Lp~-~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~ 144 (982)
..+.+..+ +..++. .|.+ .+|+.+.|.. .+..+.+.+|.++++|+.|+|++|.++.+....|. ...+..+.+.
T Consensus 138 ~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp- 211 (401)
T 4fdw_A 138 AKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP- 211 (401)
T ss_dssp SEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC-
T ss_pred cEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC-
Confidence 33444433 444433 4555 3688888864 67777778888888899999988888875555554 3444333333
Q ss_pred CCCccchhhcccchhcccCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcC
Q 002014 145 NSTNALRHVFASRIVEIKDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLG 221 (982)
Q Consensus 145 N~L~~L~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS 221 (982)
+.+..+.... +..+++|+.+.+..| ++.++. +|.. .+|+.+.| .+.++.++ .|.++++|+.|.+.
T Consensus 212 ~~l~~I~~~a---------F~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 212 VTLKEIGSQA---------FLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp TTCCEECTTT---------TTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEE
T ss_pred CchheehhhH---------hhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeC
Confidence 2233333322 235668888888864 666665 5555 78888888 45566664 78888999999998
Q ss_pred CCCCC-----Cccc-cccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCC
Q 002014 222 FNNLR-----SIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (982)
Q Consensus 222 ~N~Ls-----~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgN 293 (982)
+|.+. .++. .+..+++|+.+.|. +.++.++ .|.+|++|+.|.|..| ++.+.. ..+..+ +|+.|.+.+|
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~-~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINF-SAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECT-TSSSSS-CCCEEEECCS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcH-HhCCCC-CCCEEEEcCC
Confidence 87765 3443 55667889999998 4577773 7888899999999554 776654 567778 8999999988
Q ss_pred CCCCCcccchhHhhhcC-CCceeecCCCcc
Q 002014 294 PLCCSRWYRAQVFSYFA-HPAKLKVDGKEI 322 (982)
Q Consensus 294 pLs~~~~~r~~v~~~l~-~L~lL~LdgN~I 322 (982)
.+.... ...|..++ .+..+.+..+.+
T Consensus 356 ~~~~l~---~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 356 TPPQVF---EKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SCCBCC---CSSCCCSCTTCCEEEECGGGH
T ss_pred CCcccc---cccccCCCCCccEEEeCHHHH
Confidence 775432 23343442 456666665543
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.98 E-value=2.2e-09 Score=122.57 Aligned_cols=217 Identities=11% Similarity=0.130 Sum_probs=155.8
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcc
Q 002014 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (982)
Q Consensus 82 ~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L 161 (982)
.|.++ +|+.+.|..+ ++.+...+|.+ .+|+.+.|.+ .+..+.+.+|.++.+|..+.+..|.+..++...+.
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~----- 201 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV----- 201 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-----
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-----
Confidence 45554 6888887554 76666777777 4688888875 67776677788888777777777776666654332
Q ss_pred cCCCCCCCccEEEccCCccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-ccccccc
Q 002014 162 KDSPQWNRLSFVSCSCNRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCH 237 (982)
Q Consensus 162 ~~l~~L~~Lq~LdLS~N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~s 237 (982)
..+|+.+.|..+ ++.++. +|..+++|+.|.|..| ++.++ +|.+ .+|+.+.| .+.++.++. .+..+++
T Consensus 202 -----~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~ 272 (401)
T 4fdw_A 202 -----YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPE 272 (401)
T ss_dssp -----TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTT
T ss_pred -----ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCC
Confidence 347788888744 776655 6778888888888764 55553 5655 67888888 455676654 5666789
Q ss_pred ceeecccCCcCC-----Cc--ccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcC
Q 002014 238 IVKLVLRNNALT-----TL--RGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFA 310 (982)
Q Consensus 238 L~~L~Ls~N~Ls-----~L--~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~ 310 (982)
|+.+.+.+|.+. .+ ..|..|++|+.+.|. |.++.++. ..+.++++|+.|.|..| +.. +....|..+
T Consensus 273 L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~-~aF~~c~~L~~l~lp~~-l~~---I~~~aF~~~- 345 (401)
T 4fdw_A 273 LAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ-GLLGGNRKVTQLTIPAN-VTQ---INFSAFNNT- 345 (401)
T ss_dssp CCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-TTTTTCCSCCEEEECTT-CCE---ECTTSSSSS-
T ss_pred CCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-hhhcCCCCccEEEECcc-ccE---EcHHhCCCC-
Confidence 999999888775 34 378899999999998 45777765 67888899999999665 442 334557677
Q ss_pred CCceeecCCCccC
Q 002014 311 HPAKLKVDGKEIS 323 (982)
Q Consensus 311 ~L~lL~LdgN~Is 323 (982)
.|+.+.+.+|.+.
T Consensus 346 ~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 346 GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCEEEECCSSCC
T ss_pred CCCEEEEcCCCCc
Confidence 8899999988765
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=4.4e-10 Score=123.92 Aligned_cols=85 Identities=22% Similarity=0.264 Sum_probs=65.7
Q ss_pred CCCCCCccEEEccC-Cccccchh-hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccccccccccce
Q 002014 164 SPQWNRLSFVSCSC-NRLVIMDE-SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (982)
Q Consensus 164 l~~L~~Lq~LdLS~-N~Lt~LP~-sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~ 239 (982)
+..+++|+.|+|++ |.|+.+|. .|..+++|+.|+|++|+|+.++ .|..+++|+.|+|++|+|+.+++.......|+
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~ 106 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence 34567899999996 99998874 7999999999999999999975 68899999999999999988875322211144
Q ss_pred eecccCCcC
Q 002014 240 KLVLRNNAL 248 (982)
Q Consensus 240 ~L~Ls~N~L 248 (982)
.|+|.+|.+
T Consensus 107 ~l~l~~N~~ 115 (347)
T 2ifg_A 107 ELVLSGNPL 115 (347)
T ss_dssp EEECCSSCC
T ss_pred EEEeeCCCc
Confidence 444444443
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.94 E-value=1.3e-10 Score=131.37 Aligned_cols=178 Identities=21% Similarity=0.202 Sum_probs=118.3
Q ss_pred CCCCcEEEccCCCCCCCCCcCCC-----CCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhc
Q 002014 86 LTSLKVVSALPPPARDPTPLSLL-----PFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVE 160 (982)
Q Consensus 86 L~~Lk~L~Ls~N~L~~~iP~sf~-----~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~ 160 (982)
+++|+.|+|++|.++......|. ..++|+.|+|++|.|+......+...
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------------- 124 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV-------------------------- 124 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHH--------------------------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHH--------------------------
Confidence 57899999999998754333332 23799999999999875322222110
Q ss_pred ccCCCCCCCccEEEccCCccccch-----hhc-CCCCCCCEEEcCCCCCCCC------CCcCCCCCCCEEEcCCCCCCCc
Q 002014 161 IKDSPQWNRLSFVSCSCNRLVIMD-----ESL-QLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFNNLRSI 228 (982)
Q Consensus 161 L~~l~~L~~Lq~LdLS~N~Lt~LP-----~sL-~~L~~L~~LdLS~N~Lt~l------~~L~~L~sL~~LdLS~N~Ls~L 228 (982)
+++|+.|+|++|.|+... ..+ ...++|++|+|++|.|+.. ..+..+++|++|+|++|.|+..
T Consensus 125 ------L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~ 198 (372)
T 3un9_A 125 ------FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE 198 (372)
T ss_dssp ------HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH
T ss_pred ------HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH
Confidence 125788889998887322 223 3567899999999988752 2456778899999999988753
Q ss_pred c-----ccccccccceeecccCCcCCCc------ccCCCCCCCCEEECcCCCCCCCchhhhhcCC---CC--CcEEE--e
Q 002014 229 A-----AFSEVSCHIVKLVLRNNALTTL------RGIENLKSLEGLDISYNIISTFSELEFLASL---PY--LLNLW--L 290 (982)
Q Consensus 229 ~-----~l~~~L~sL~~L~Ls~N~Ls~L------~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~L---p~--L~~L~--L 290 (982)
. .....+++|+.|+|++|.|+.. ..+..+++|+.|+|++|.|+.... ..+..+ .. |+.+. +
T Consensus 199 g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~-~~L~~~~~~~~~~L~~l~~ll 277 (372)
T 3un9_A 199 GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGR-QVLRDLGGAAEGGARVVVSLT 277 (372)
T ss_dssp HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHH-HHHHHCC------CEEECCCC
T ss_pred HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHH-HHHHHHhcCCCccchhhHhhh
Confidence 2 2334457899999999998863 245567899999999999987532 333322 21 66666 6
Q ss_pred cCCCCC
Q 002014 291 EGNPLC 296 (982)
Q Consensus 291 sgNpLs 296 (982)
.+|.+.
T Consensus 278 ~~~~~~ 283 (372)
T 3un9_A 278 EGTAVS 283 (372)
T ss_dssp ----CH
T ss_pred cCCccC
Confidence 666664
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.33 E-value=3.8e-07 Score=102.84 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=92.8
Q ss_pred hhHHHhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccc
Q 002014 78 QLRRILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASR 157 (982)
Q Consensus 78 ~Lp~~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~ 157 (982)
.++..+..+|+|+.|+|.+|.-. .++. +. +++|+.|+|..|.++......+..
T Consensus 163 ~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~------------------------ 215 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILG------------------------ 215 (362)
T ss_dssp BCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHH------------------------
T ss_pred CHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHH------------------------
Confidence 46677888999999999887322 2232 43 799999999999886533322221
Q ss_pred hhcccCCCCCCCccEEEccC--Cc------cccchhhc--CCCCCCCEEEcCCCCCCCC-----CCcCCCCCCCEEEcCC
Q 002014 158 IVEIKDSPQWNRLSFVSCSC--NR------LVIMDESL--QLLPAVETLDLSRNKFAKV-----DNLRKCVNLKHLDLGF 222 (982)
Q Consensus 158 l~~L~~l~~L~~Lq~LdLS~--N~------Lt~LP~sL--~~L~~L~~LdLS~N~Lt~l-----~~L~~L~sL~~LdLS~ 222 (982)
..+++|+.|+|+. |. +..+...+ ..+|+|+.|+|.+|.+... .....+++|+.|+|+.
T Consensus 216 -------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 216 -------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp -------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred -------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 0234666666642 11 22222222 2467777777777776531 1113467788888888
Q ss_pred CCCCCcc-----ccccccccceeecccCCcCCCc--ccCCC-CCCCCEEECcCCC
Q 002014 223 NNLRSIA-----AFSEVSCHIVKLVLRNNALTTL--RGIEN-LKSLEGLDISYNI 269 (982)
Q Consensus 223 N~Ls~L~-----~l~~~L~sL~~L~Ls~N~Ls~L--~~L~~-L~sL~~LdLS~N~ 269 (982)
|.|.... .....+++|+.|+|++|.|+.. ..+.. + ...++++.|+
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 8776532 1223457788888888877652 22221 1 3456666665
No 148
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=1.6e-07 Score=101.73 Aligned_cols=103 Identities=31% Similarity=0.482 Sum_probs=73.1
Q ss_pred EEcCCCCCCCccc----cccccccceeecccCCcCCCcccC----CCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEE
Q 002014 218 LDLGFNNLRSIAA----FSEVSCHIVKLVLRNNALTTLRGI----ENLKSLEGLDISYNIISTFSELEFLASLPYLLNLW 289 (982)
Q Consensus 218 LdLS~N~Ls~L~~----l~~~L~sL~~L~Ls~N~Ls~L~~L----~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~ 289 (982)
++++.|....++. ....+++|+.|+|++|+|+.++.+ ..+++|+.|+|++|.|+++..+..+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 4455554433332 223456777778888877776543 3789999999999999998666666666 999999
Q ss_pred ecCCCCCCC----cccchhHhhhcCCCceeecCCCccC
Q 002014 290 LEGNPLCCS----RWYRAQVFSYFAHPAKLKVDGKEIS 323 (982)
Q Consensus 290 LsgNpLs~~----~~~r~~v~~~l~~L~lL~LdgN~Is 323 (982)
|++||++.. ..|+..++..++.| ..|||.+|+
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L--~~LDg~~v~ 262 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKL--LRLDGHELP 262 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTC--CEESSCBCC
T ss_pred ccCCcCccccCcchhHHHHHHHHCccc--CeECCcCCC
Confidence 999999752 35677778878554 566787775
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.27 E-value=3e-07 Score=103.68 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=17.6
Q ss_pred CCCCCEEECcCCCCCCCch---hhhhcCCCCCcEEEecCCCCC
Q 002014 257 LKSLEGLDISYNIISTFSE---LEFLASLPYLLNLWLEGNPLC 296 (982)
Q Consensus 257 L~sL~~LdLS~N~Ls~l~~---l~~L~~Lp~L~~L~LsgNpLs 296 (982)
+++|+.|+|+.|.|++... ...+..+++|+.|+|++|+|+
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 4455555555555443211 011223455555555555544
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=5.1e-07 Score=91.78 Aligned_cols=123 Identities=20% Similarity=0.141 Sum_probs=89.6
Q ss_pred chhhHHHhcCCCCCcEEEccCC-CCCCC----CCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccc
Q 002014 76 LEQLRRILKLLTSLKVVSALPP-PARDP----TPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNAL 150 (982)
Q Consensus 76 L~~Lp~~L~~L~~Lk~L~Ls~N-~L~~~----iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L 150 (982)
.+.+...+...++|++|+|++| .+... +...+...++|++|+|++|.|.......+...- .
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-------~------- 90 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-------K------- 90 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-------H-------
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-------H-------
Confidence 3456778888999999999999 88742 345566778999999999999753332222211 0
Q ss_pred hhhcccchhcccCCCCCCCccEEEccCCcccc-----chhhcCCCCCCCEEEc--CCCCCCCC------CCcCCCCCCCE
Q 002014 151 RHVFASRIVEIKDSPQWNRLSFVSCSCNRLVI-----MDESLQLLPAVETLDL--SRNKFAKV------DNLRKCVNLKH 217 (982)
Q Consensus 151 ~~l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt~-----LP~sL~~L~~L~~LdL--S~N~Lt~l------~~L~~L~sL~~ 217 (982)
..+.|++|+|++|.|.. +...+...++|++|+| ++|.|..- ..+...++|+.
T Consensus 91 ---------------~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~ 155 (185)
T 1io0_A 91 ---------------VNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLK 155 (185)
T ss_dssp ---------------HCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred ---------------hCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCE
Confidence 12478999999999983 5567777888999999 78888752 24556678888
Q ss_pred EEcCCCCCCC
Q 002014 218 LDLGFNNLRS 227 (982)
Q Consensus 218 LdLS~N~Ls~ 227 (982)
|+|++|.+..
T Consensus 156 L~L~~n~i~~ 165 (185)
T 1io0_A 156 FGYHFTQQGP 165 (185)
T ss_dssp EECCCSSHHH
T ss_pred EeccCCCCCh
Confidence 8888888753
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.13 E-value=1.3e-05 Score=90.24 Aligned_cols=193 Identities=13% Similarity=0.070 Sum_probs=80.1
Q ss_pred HhcCCCCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchhhcccchhcc
Q 002014 82 ILKLLTSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRHVFASRIVEI 161 (982)
Q Consensus 82 ~L~~L~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~l~~~~l~~L 161 (982)
.|.++++|+.+.|.++ +..+...+|.++.+|+.+.|..| ++.+....+.++..|..+.+..+ ...+...
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~-~~~i~~~-------- 225 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS-LYYLGDF-------- 225 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTT--------
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC-ceEeehh--------
Confidence 3455555555555332 33344445555555555555544 33333334444333222221111 0111100
Q ss_pred cCCCCCCCccEEEccCCccccch-hhcCCCCCCCEEEcCCCCCCCC-CCcCCCCCCCEEEcCCCCCCCccccccccccce
Q 002014 162 KDSPQWNRLSFVSCSCNRLVIMD-ESLQLLPAVETLDLSRNKFAKV-DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIV 239 (982)
Q Consensus 162 ~~l~~L~~Lq~LdLS~N~Lt~LP-~sL~~L~~L~~LdLS~N~Lt~l-~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~ 239 (982)
.....+|+.+.+..+ ++.++ ..+..+..|+.+.+..+...-- ..+..+..|+.+.+..+.+.. ..+..+.+|+
T Consensus 226 --~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~ 300 (394)
T 4fs7_A 226 --ALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLT 300 (394)
T ss_dssp --TTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCC
T ss_pred --hcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc--cccccccccc
Confidence 011234555555432 23232 2455566666666655432211 134444555554444332111 1222334455
Q ss_pred eecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCC
Q 002014 240 KLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGN 293 (982)
Q Consensus 240 ~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgN 293 (982)
.+.+..+ ++.++ .|..+.+|+.++|..+ ++.+.. ..+.++.+|+.+.|..|
T Consensus 301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK-RSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT-TTTTTCTTCCEECCCTT
T ss_pred ccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH-HhccCCCCCCEEEECcc
Confidence 5544432 33332 4445555555555322 443332 33444555555555443
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.07 E-value=2.2e-06 Score=86.99 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCccEEEccCCccc-----cchhhcCCCCCCCEEEcCCCCCCCC------CCcCCCCCCCEEEc--CCCCCC
Q 002014 168 NRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDL--GFNNLR 226 (982)
Q Consensus 168 ~~Lq~LdLS~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt~l------~~L~~L~sL~~LdL--S~N~Ls 226 (982)
++|++|+|++|.|. .+...+...++|++|+|++|.|..- ..+...++|+.|+| ++|.|.
T Consensus 65 ~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 65 TYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp CSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred CCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence 46777777777776 2334455556677777777766641 24555556666666 555554
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.95 E-value=0.00012 Score=82.24 Aligned_cols=107 Identities=15% Similarity=0.178 Sum_probs=70.5
Q ss_pred CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCCCEEECcCCCCCCCchhhhhcCCCC
Q 002014 208 NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSLEGLDISYNIISTFSELEFLASLPY 284 (982)
Q Consensus 208 ~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~ 284 (982)
+|..+..|+.+.+..+.. .+.. .+..++.|+.+.+. +.++.++ .|..|.+|+.+.|..+ ++.+.. ..+.++.+
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~-~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILD-DAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECT-TTTTTCTT
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehH-hHhhCCCC
Confidence 355556666666654432 2332 34445677777775 4566663 6888889999988754 666654 56788889
Q ss_pred CcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCcc
Q 002014 285 LLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKEI 322 (982)
Q Consensus 285 L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~I 322 (982)
|+.+.|..+ ++.. ....|..+..|+.+.+.++..
T Consensus 336 L~~i~ip~s-v~~I---~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 336 LERIAIPSS-VTKI---PESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CCEEEECTT-CCBC---CGGGGTTCTTCCEEEESSCHH
T ss_pred CCEEEECcc-cCEE---hHhHhhCCCCCCEEEECCcee
Confidence 999988654 4432 345677888888888887643
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.90 E-value=5.5e-05 Score=85.10 Aligned_cols=145 Identities=12% Similarity=0.104 Sum_probs=94.7
Q ss_pred CCCccEEEccCCccccchhhcCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCCCCCCccccccccccceeeccc
Q 002014 167 WNRLSFVSCSCNRLVIMDESLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAAFSEVSCHIVKLVLR 244 (982)
Q Consensus 167 L~~Lq~LdLS~N~Lt~LP~sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N~Ls~L~~l~~~L~sL~~L~Ls 244 (982)
+..|+.+.+..+.. .+...+....+|+.+.+..+ ++.+ ..+..+..|+.+.+..+...--...+..+..|+.+.+.
T Consensus 207 ~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 207 CILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEEC
T ss_pred ccccceeecCCCce-EeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccC
Confidence 34455555544322 22233344556777777543 3333 26788899999999887543222345556778888776
Q ss_pred CCcCCCcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCC
Q 002014 245 NNALTTLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (982)
Q Consensus 245 ~N~Ls~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN 320 (982)
.+.+.. ..+..+.+|+.+.+..+ ++.++. ..+..+.+|+.+.|..+ +.. +....|..+..|+.+.|..+
T Consensus 285 ~~~i~~-~~F~~~~~L~~i~l~~~-i~~I~~-~aF~~c~~L~~i~lp~~-v~~---I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 285 SVIVPE-KTFYGCSSLTEVKLLDS-VKFIGE-EAFESCTSLVSIDLPYL-VEE---IGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp SSEECT-TTTTTCTTCCEEEECTT-CCEECT-TTTTTCTTCCEECCCTT-CCE---ECTTTTTTCTTCCEECCCTT
T ss_pred ceeecc-ccccccccccccccccc-cceech-hhhcCCCCCCEEEeCCc-ccE---EhHHhccCCCCCCEEEECcc
Confidence 654432 36788999999999765 676654 56889999999999754 442 33455777788888888765
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.80 E-value=0.00025 Score=79.65 Aligned_cols=125 Identities=10% Similarity=0.189 Sum_probs=87.4
Q ss_pred hcCCCCCCCEEEcCCCCCCCC--CCcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCC
Q 002014 186 SLQLLPAVETLDLSRNKFAKV--DNLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (982)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l--~~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (982)
+|..+..|+.+.+..+.. .+ ..|.++..|+.+.+. +.++.++. .+..+.+|+.+.|..+ ++.+. .|.+|.+|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 677888999999876543 33 378889999999996 56777765 5566789999999764 77763 79999999
Q ss_pred CEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCCc
Q 002014 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGKE 321 (982)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN~ 321 (982)
+.+.|..+ ++.+.. ..+.++++|+.+.+.+|.... ..+.....|+.+.+..+.
T Consensus 337 ~~i~ip~s-v~~I~~-~aF~~C~~L~~i~~~~~~~~~------~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 337 ERIAIPSS-VTKIPE-SAFSNCTALNNIEYSGSRSQW------NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CEEEECTT-CCBCCG-GGGTTCTTCCEEEESSCHHHH------HTCBCCCCC---------
T ss_pred CEEEECcc-cCEEhH-hHhhCCCCCCEEEECCceeeh------hhhhccCCCCEEEeCCCC
Confidence 99999654 777765 678999999999999875421 123344556666555443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=2.5e-05 Score=84.65 Aligned_cols=91 Identities=30% Similarity=0.370 Sum_probs=55.0
Q ss_pred EEccCCccccchh----hcCCCCCCCEEEcCCCCCCCCCCcC----CCCCCCEEEcCCCCCCCccccccccc--cceeec
Q 002014 173 VSCSCNRLVIMDE----SLQLLPAVETLDLSRNKFAKVDNLR----KCVNLKHLDLGFNNLRSIAAFSEVSC--HIVKLV 242 (982)
Q Consensus 173 LdLS~N~Lt~LP~----sL~~L~~L~~LdLS~N~Lt~l~~L~----~L~sL~~LdLS~N~Ls~L~~l~~~L~--sL~~L~ 242 (982)
++++.|....++. ...++++|+.|+|++|+|+.++.+. .+++|+.|+|++|.|+++..+. .+. +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~-~l~~l~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD-KIKGLKLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG-GGTTSCCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh-hcccCCcceEE
Confidence 5556665543332 1245667777777777777665333 5677777777777777664322 122 677777
Q ss_pred ccCCcCCC-cc--------cCCCCCCCCEEE
Q 002014 243 LRNNALTT-LR--------GIENLKSLEGLD 264 (982)
Q Consensus 243 Ls~N~Ls~-L~--------~L~~L~sL~~Ld 264 (982)
|++|.+.. ++ .+..+|+|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 77777764 11 255677777775
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.39 E-value=0.001 Score=73.86 Aligned_cols=102 Identities=16% Similarity=0.282 Sum_probs=46.8
Q ss_pred hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCC
Q 002014 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (982)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (982)
.+..+..|+.+.+..+ ++.+. .+..+.+|+.+.+..+ +..++. .+..+.+|+.+.+.++.++.++ .|.+|.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 3444455555555443 33332 4444555555555432 333332 3333455555555555555442 45555555
Q ss_pred CEEECcCCCCCCCchhhhhcCCCCCcEEEec
Q 002014 261 EGLDISYNIISTFSELEFLASLPYLLNLWLE 291 (982)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~Ls 291 (982)
+.+.|..+ ++.+.. ..+.++.+|+.+.+.
T Consensus 313 ~~i~lp~~-l~~I~~-~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 313 SSVTLPTA-LKTIQV-YAFKNCKALSTISYP 341 (379)
T ss_dssp CEEECCTT-CCEECT-TTTTTCTTCCCCCCC
T ss_pred CEEEcCcc-ccEEHH-HHhhCCCCCCEEEEC
Confidence 55555432 443332 334455555555443
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.32 E-value=0.0022 Score=71.16 Aligned_cols=127 Identities=10% Similarity=0.110 Sum_probs=86.4
Q ss_pred hcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCCCccc-cccccccceeecccCCcCCCcc--cCCCCCCC
Q 002014 186 SLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNALTTLR--GIENLKSL 260 (982)
Q Consensus 186 sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~Ls~L~--~L~~L~sL 260 (982)
.+....+|+.+.+..+ +..+. .+..+..|+.+.+..+ ++.+.. .+..+..|+.+.+..+ ++.++ .|..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445556666666543 33332 5677788888888765 565654 4445678888888644 65553 68889999
Q ss_pred CEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccchhHhhhcCCCceeecCCC
Q 002014 261 EGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYRAQVFSYFAHPAKLKVDGK 320 (982)
Q Consensus 261 ~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r~~v~~~l~~L~lL~LdgN 320 (982)
+.+.+.++.++.++. ..+.++.+|+.+.|..+ +.. +....|..+..|+.+.+..+
T Consensus 289 ~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~-l~~---I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 289 TKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA-LKT---IQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp CEEEECCTTCCEECT-TTTTTCTTCCEEECCTT-CCE---ECTTTTTTCTTCCCCCCCTT
T ss_pred ccccccccccceehh-hhhcCCCCCCEEEcCcc-ccE---EHHHHhhCCCCCCEEEECCc
Confidence 999998888888765 66788899999998654 442 23345667777777776543
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.89 E-value=0.00079 Score=69.77 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=81.2
Q ss_pred hhHHHhcCCCCCcEEEccCC-CCCC----CCCcCCCCCCCccEEEeeCCCCCccchhhHHhhhhhhHhhhccCCCccchh
Q 002014 78 QLRRILKLLTSLKVVSALPP-PARD----PTPLSLLPFCRLKVLELRGCDLSTSAAKGLLELRHTLEKIICHNSTNALRH 152 (982)
Q Consensus 78 ~Lp~~L~~L~~Lk~L~Ls~N-~L~~----~iP~sf~~L~nL~~LdLS~N~Lss~~p~~L~~L~~LLeLLL~~N~L~~L~~ 152 (982)
.+...+..-+.|+.|+|++| .|.. .+..++..-+.|+.|+|++|.|.......|...- ..|
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL-------~~N------- 97 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELI-------ETS------- 97 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHH-------HHC-------
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHH-------hcC-------
Confidence 45666777889999999885 7653 2345566678899999999999764443333321 112
Q ss_pred hcccchhcccCCCCCCCccEEEccCCccc-----cchhhcCCCCCCCEEEcCCCCC---CC-----C-CCcCCCCCCCEE
Q 002014 153 VFASRIVEIKDSPQWNRLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKF---AK-----V-DNLRKCVNLKHL 218 (982)
Q Consensus 153 l~~~~l~~L~~l~~L~~Lq~LdLS~N~Lt-----~LP~sL~~L~~L~~LdLS~N~L---t~-----l-~~L~~L~sL~~L 218 (982)
+.|+.|+|+.|.|. .+-..+..-+.|++|+|++|.. .. + ..+..-+.|+.|
T Consensus 98 ---------------~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L 162 (197)
T 1pgv_A 98 ---------------PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRV 162 (197)
T ss_dssp ---------------SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred ---------------CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeE
Confidence 37889999999988 4445677777888888886533 32 1 245556778888
Q ss_pred EcCCCCCC
Q 002014 219 DLGFNNLR 226 (982)
Q Consensus 219 dLS~N~Ls 226 (982)
+|+.|.+.
T Consensus 163 ~l~~~~~g 170 (197)
T 1pgv_A 163 GISFASME 170 (197)
T ss_dssp ECCCCCHH
T ss_pred eccCCCcc
Confidence 88777543
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.81 E-value=0.0017 Score=62.50 Aligned_cols=61 Identities=21% Similarity=0.215 Sum_probs=48.7
Q ss_pred eecccCCcCC--CcccCCCCCCCCEEECcCCCCCCCchhhhhcCCCCCcEEEecCCCCCCCcccc
Q 002014 240 KLVLRNNALT--TLRGIENLKSLEGLDISYNIISTFSELEFLASLPYLLNLWLEGNPLCCSRWYR 302 (982)
Q Consensus 240 ~L~Ls~N~Ls--~L~~L~~L~sL~~LdLS~N~Ls~l~~l~~L~~Lp~L~~L~LsgNpLs~~~~~r 302 (982)
.++.+++.|+ .+|.- --++|+.|+|++|+|+.++. ..+..+++|+.|+|.+||+.|+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~CdC~l~ 74 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWRCDCRLV 74 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCBCSGGGH
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCeeccCccH
Confidence 5677777777 66521 12469999999999999986 67888999999999999999998653
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.58 E-value=0.0013 Score=66.88 Aligned_cols=39 Identities=8% Similarity=0.058 Sum_probs=25.1
Q ss_pred CCCcEEEccCCCCCCCCCcCCCCCCCccEEEeeCCC-CCc
Q 002014 87 TSLKVVSALPPPARDPTPLSLLPFCRLKVLELRGCD-LST 125 (982)
Q Consensus 87 ~~Lk~L~Ls~N~L~~~iP~sf~~L~nL~~LdLS~N~-Lss 125 (982)
.+|+.|+|+++.|+...-..+.++++|+.|+|++|. |+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD 100 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED 100 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH
Confidence 356777777777665544556667777777777774 554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.40 E-value=0.0026 Score=65.89 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=31.4
Q ss_pred CccEEEccCCccc-----cchhhcCCCCCCCEEEcCCCCCCCC------CCcCCCCCCCEEEcCCC
Q 002014 169 RLSFVSCSCNRLV-----IMDESLQLLPAVETLDLSRNKFAKV------DNLRKCVNLKHLDLGFN 223 (982)
Q Consensus 169 ~Lq~LdLS~N~Lt-----~LP~sL~~L~~L~~LdLS~N~Lt~l------~~L~~L~sL~~LdLS~N 223 (982)
.|+.|+|++|+|. .+...+..-+.|++|+|+.|.|..- ..+..-+.|+.|+|++|
T Consensus 71 ~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 71 HIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 5666677766666 3333444555666666666666541 24444555666666544
No 163
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.11 E-value=0.0071 Score=61.52 Aligned_cols=81 Identities=20% Similarity=0.181 Sum_probs=56.4
Q ss_pred CCCCEEEcCCCCCCCccc-cccccccceeecccCCc-CCC--cccCCCC----CCCCEEECcCC-CCCCCchhhhhcCCC
Q 002014 213 VNLKHLDLGFNNLRSIAA-FSEVSCHIVKLVLRNNA-LTT--LRGIENL----KSLEGLDISYN-IISTFSELEFLASLP 283 (982)
Q Consensus 213 ~sL~~LdLS~N~Ls~L~~-l~~~L~sL~~L~Ls~N~-Ls~--L~~L~~L----~sL~~LdLS~N-~Ls~l~~l~~L~~Lp 283 (982)
..|+.|||+++.|+...- ....+++|+.|+|++|. |++ +..+..+ ++|++|+|+++ +|++- .+..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-GIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-HHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-HHHHHhcCC
Confidence 468888998888764321 22457888888888884 665 3344443 46888888887 47764 345677788
Q ss_pred CCcEEEecCCC
Q 002014 284 YLLNLWLEGNP 294 (982)
Q Consensus 284 ~L~~L~LsgNp 294 (982)
+|+.|+|++++
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 88888888876
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.64 E-value=0.013 Score=56.24 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=40.6
Q ss_pred cEEEccCCccc--cchhhcCCCCCCCEEEcCCCCCCCCC--CcCCCCCCCEEEcCCCCCC
Q 002014 171 SFVSCSCNRLV--IMDESLQLLPAVETLDLSRNKFAKVD--NLRKCVNLKHLDLGFNNLR 226 (982)
Q Consensus 171 q~LdLS~N~Lt--~LP~sL~~L~~L~~LdLS~N~Lt~l~--~L~~L~sL~~LdLS~N~Ls 226 (982)
..++++++.|+ .+|..+ .++|+.|+|++|+|+.++ .|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888888 887543 346888888888888875 5677778888888888664
No 165
>4fxw_B Splicing factor 1; UHM, protein binding, phosphorylat; HET: SEP; 2.29A {Homo sapiens} PDB: 4fxx_A
Probab=30.42 E-value=29 Score=33.15 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.5
Q ss_pred hhhHHHHhhhHHHHHHhhccCc
Q 002014 603 REDILHRRHNLVAEILQLSAES 624 (982)
Q Consensus 603 ~~d~l~rr~~l~~~~lq~~~~~ 624 (982)
+|-+-..||.||||++++--.+
T Consensus 94 r~~LE~ER~~lIe~~~k~~P~f 115 (124)
T 4fxw_B 94 RKKLEEERHNLITEMVALNPDF 115 (124)
T ss_dssp HHHHHHHHHHHHHHGGGTCSSC
T ss_pred HHHHHHHHHHHHHHHHHHCcCC
Confidence 7788889999999999986553
Done!