BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002015
(981 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKJ|A Chain A, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|B Chain B, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|C Chain C, Human Milk Xanthine Oxidoreductase
pdb|2CKJ|D Chain D, Human Milk Xanthine Oxidoreductase
Length = 1333
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 272/801 (33%), Positives = 416/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L V ST+ +I+S++ ++K +PG F+S D+P G NI
Sbjct: 589 GEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEAKKVPGFVCFISADDVP--GSNI 646
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
E +FA + C G I VVADT + RAA + Y+ P I+++E+
Sbjct: 647 TGICN--DETVFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEE---LPAIITIED 701
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ P K GD+ KG +EAD+ ++S E+ +G Q +FY+ET +AVP E
Sbjct: 702 AIKNNSFYG-PELKIEK--GDLKKGFSEADN-VVSGEIYIGGQEHFYLETHCTIAVPKGE 757
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+TA ALAA
Sbjct: 758 AGEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGKETRSTVVSTAVALAA 817
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK RPVR ++R DM++ GGRHP Y VGF G + AL+++ + G D+S +
Sbjct: 818 YKTGRPVRCMLDRDEDMLITGGRHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQS 877
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNLPS TA R G QG IAE + VA T M
Sbjct: 878 IMERALFHMDNCYKIPNIRGTGRLCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGM 937
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR NL+ L F + +LE +T+P W+ SS ++ R + +FN+ N
Sbjct: 938 PAEEVRRKNLYKEGDLTHFNQ----KLEGFTLPRCWEECLASSQYHARKSEVDKFNKENC 993
Query: 577 WRKKGISRVP----IVYDVPLMSTPGKV-SILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV++ GG E+GQGL TK+ Q+A+
Sbjct: 994 WKKRGLCIIPTKFGISFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASR 1053
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + T +V TA S ++ + QAV C+ +++RL P
Sbjct: 1054 ALKIPT--------SKIYISETSTNTVPNTSPTAASVSADLNGQAVYAACQTILKRLEPY 1105
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ S WE + AY+ +VSLSA+ Y
Sbjct: 1106 KKK----NPSGSWEDWVTAAYMDTVSLSATGFY--------------------------- 1134
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
R+ NL Y + P+ + YG S+VEI+ LTG+
Sbjct: 1135 ------------------RTPNLGYSFETNSGNPF---HYFSYGVACSEVEIDCLTGDHK 1173
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 1174 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 1233
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL LA S+ A + AIR AR
Sbjct: 1234 GSIPIEFRVSLLRDCPNKKAIYASKAVGEPPLFLAASIFFAIKDAIRAAR----AQHTGN 1289
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1290 NVKELFRLDSPATPEKIRNAC 1310
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 130 NQPEP-------TMEEIENAFQGNLCRCTGYRPILQGFRTFA 164
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG K + DP TTLL +LR KL
Sbjct: 2 TADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLSGTKL 41
>pdb|2E1Q|A Chain A, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|B Chain B, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|C Chain C, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
pdb|2E1Q|D Chain D, Crystal Structure Of Human Xanthine Oxidoreductase Mutant,
Glu803val
Length = 1333
Score = 423 bits (1088), Expect = e-118, Method: Compositional matrix adjust.
Identities = 272/801 (33%), Positives = 416/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L V ST+ +I+S++ ++K +PG F+S D+P G NI
Sbjct: 589 GEAVYCDDIPRYENELSLRLVTSTRAHAKIKSIDTSEAKKVPGFVCFISADDVP--GSNI 646
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
E +FA + C G I VVADT + RAA + Y+ P I+++E+
Sbjct: 647 TGICN--DETVFAKDKVTCVGHIIGAVVADTPEHTQRAAQGVKITYEE---LPAIITIED 701
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ P K GD+ KG +EAD+ ++S E+ +G Q +FY+ET +AVP E
Sbjct: 702 AIKNNSFYG-PELKIEK--GDLKKGFSEADN-VVSGEIYIGGQEHFYLETHCTIAVPKGE 757
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+TA ALAA
Sbjct: 758 AGEMELFVSTQNTMKTQSFVAKMLGVPANRIVVRVKRMGGGFGGKVTRSTVVSTAVALAA 817
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK RPVR ++R DM++ GGRHP Y VGF G + AL+++ + G D+S +
Sbjct: 818 YKTGRPVRCMLDRDEDMLITGGRHPFLARYKVGFMKTGTVVALEVDHFSNVGNTQDLSQS 877
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNLPS TA R G QG IAE + VA T M
Sbjct: 878 IMERALFHMDNCYKIPNIRGTGRLCKTNLPSNTAFRGFGGPQGMLIAECWMSEVAVTCGM 937
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR NL+ L F + +LE +T+P W+ SS ++ R + +FN+ N
Sbjct: 938 PAEEVRRKNLYKEGDLTHFNQ----KLEGFTLPRCWEECLASSQYHARKSEVDKFNKENC 993
Query: 577 WRKKGISRVP----IVYDVPLMSTPGKV-SILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV++ GG E+GQGL TK+ Q+A+
Sbjct: 994 WKKRGLCIIPTKFGISFTVPFLNQAGALLHVYTDGSVLLTHGGTEMGQGLHTKMVQVASR 1053
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + T +V TA S ++ + QAV C+ +++RL P
Sbjct: 1054 ALKIPT--------SKIYISETSTNTVPNTSPTAASVSADLNGQAVYAACQTILKRLEPY 1105
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ S WE + AY+ +VSLSA+ Y
Sbjct: 1106 KKK----NPSGSWEDWVTAAYMDTVSLSATGFY--------------------------- 1134
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
R+ NL Y + P+ + YG S+VEI+ LTG+
Sbjct: 1135 ------------------RTPNLGYSFETNSGNPF---HYFSYGVACSEVEIDCLTGDHK 1173
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 1174 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 1233
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL LA S+ A + AIR AR
Sbjct: 1234 GSIPIEFRVSLLRDCPNKKAIYASKAVGEPPLFLAASIFFAIKDAIRAAR----AQHTGN 1289
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1290 NVKELFRLDSPATPEKIRNAC 1310
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 130 NQPEP-------TMEEIENAFQGNLCRCTGYRPILQGFRTFA 164
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 20/40 (50%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG K + DP TTLL +LR KL
Sbjct: 2 TADKLVFFVNGRKVVEKNADPETTLLAYLRRKLGLSGTKL 41
>pdb|3SR6|C Chain C, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|L Chain L, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 745
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 18 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 76
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 77 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 130
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 131 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 186
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 187 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 246
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 247 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 306
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 307 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 366
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 367 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 422
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 423 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 482
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 483 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 534
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 535 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 578
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 579 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 602
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 603 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 662
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 663 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 718
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 719 NTKELFRLDSPATPEKIRNAC 739
>pdb|3ETR|C Chain C, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|N Chain N, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NS1|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
Length = 755
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 18 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 76
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 77 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 130
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 131 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 186
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 187 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 246
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 247 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 306
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 307 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 366
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 367 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 422
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 423 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 482
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 483 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 534
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 535 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 578
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 579 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 602
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 603 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 662
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 663 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 718
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 719 NTKELFRLDSPATPEKIRNAC 739
>pdb|3NRZ|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NVW|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|C Chain C, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|L Chain L, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
Length = 756
Score = 417 bits (1071), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 18 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 76
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 77 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 130
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 131 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 186
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 187 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 246
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 247 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 306
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 307 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 366
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 367 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 422
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 423 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 482
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 483 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 534
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 535 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 578
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 579 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 602
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 603 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 662
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 663 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 718
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 719 NTKELFRLDSPATPEKIRNAC 739
>pdb|1FIQ|C Chain C, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|C Chain C, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|K Chain K, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 763
Score = 416 bits (1070), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 19 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 77
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 78 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 131
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 132 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 187
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 188 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 247
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 248 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 307
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 308 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 367
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 368 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 423
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 424 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 483
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 484 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 535
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 536 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 579
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 580 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 603
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 604 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 663
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 664 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 719
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 720 NTKELFRLDSPATPEKIRNAC 740
>pdb|3EUB|C Chain C, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|L Chain L, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|U Chain U, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|4 Chain 4, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 762
Score = 416 bits (1069), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 18 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 76
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 77 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 130
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 131 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 186
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 187 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 246
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 247 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 306
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 307 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 366
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 367 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 422
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 423 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 482
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 483 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 534
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 535 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 578
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 579 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 602
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 603 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 662
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 663 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 718
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 719 NTKELFRLDSPATPEKIRNAC 739
>pdb|1FO4|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1FO4|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Isolated From
Bovine Milk
pdb|1V97|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1V97|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase
Fyx-051 Bound Form
pdb|1VDV|A Chain A, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|1VDV|B Chain B, Bovine Milk Xanthine Dehydrogenase Y-700 Bound Form
pdb|3BDJ|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3BDJ|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
A Covalently Bound Oxipurinol Inhibitor
pdb|3AM9|A Chain A, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AM9|B Chain B, Complex Of Bovine Xanthine Dehydrogenase And Trihydroxy
Fyx-051
pdb|3AMZ|A Chain A, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AMZ|B Chain B, Bovine Xanthine Oxidoreductase Urate Bound Form
pdb|3AX7|A Chain A, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX7|B Chain B, Bovine Xanthine Oxidase, Protease Cleaved Form
pdb|3AX9|A Chain A, Bovine Xanthone Oxidase, Protease Cleaved Form
pdb|3AX9|B Chain B, Bovine Xanthone Oxidase, Protease Cleaved Form
Length = 1332
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 588 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 646
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 647 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 700
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 701 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 756
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 757 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 816
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 817 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 876
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 877 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 936
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 937 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 992
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 993 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 1052
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 1053 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 1104
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 1105 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 1148
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 1149 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 1172
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 1173 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 1232
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 1233 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 1288
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1289 NTKELFRLDSPATPEKIRNAC 1309
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 130 NQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR + KL
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKL 41
>pdb|3UNA|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNA|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nad Bound
pdb|3UNC|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNC|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase To
1.65a Resolution
pdb|3UNI|A Chain A, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
pdb|3UNI|B Chain B, Crystal Structure Of Bovine Milk Xanthine Dehydrogenase With
Nadh Bound
Length = 1332
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 588 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 646
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 647 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 700
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 701 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 756
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 757 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 816
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 817 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 876
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 877 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 936
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 937 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 992
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 993 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 1052
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 1053 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 1104
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 1105 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 1148
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 1149 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 1172
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 1173 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 1232
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 1233 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 1288
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1289 NTKELFRLDSPATPEKIRNAC 1309
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 130 NQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR + KL
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKL 41
>pdb|1N5X|A Chain A, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
pdb|1N5X|B Chain B, Xanthine Dehydrogenase From Bovine Milk With Inhibitor Tei-
6720 Bound
Length = 1331
Score = 416 bits (1068), Expect = e-116, Method: Compositional matrix adjust.
Identities = 270/801 (33%), Positives = 415/801 (51%), Gaps = 87/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L+ V ST+ +I+S+++ +++ +PG FLS DIP + +
Sbjct: 587 GEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNET- 645
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
F E +FA + C G I VVADT + A RAA + V Y+ +L P I+++E+
Sbjct: 646 ---GLFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYE--DL-PAIITIED 699
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +A+P E
Sbjct: 700 AIKNNSFYGSELKI---EKGDLKKGFSEADN-VVSGELYIGGQDHFYLETHCTIAIPKGE 755
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ + ++ S Q + +A+ LG+P + + V +R+GGGFGGK ++ V+ A ALAA
Sbjct: 756 EGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLVSVAVALAA 815
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
YK PVR ++R DM++ GGRHP Y VGF G I AL+++ +AG D+S +
Sbjct: 816 YKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHS 875
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNL S TA R G Q FIAE + VA T +
Sbjct: 876 IMERALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGL 935
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + LE +++P WD SS + R + +FN+ N
Sbjct: 936 PAEEVRWKNMYKEGDLTHFNQ----RLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENC 991
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + VP ++ G + + +DGSV+V GG E+GQGL TK+ Q+A+
Sbjct: 992 WKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASK 1051
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + + T +V TA S ++ QAV C+ +++RL P
Sbjct: 1052 ALKIP--------ISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPF 1103
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ GS WE + AY VSLS + Y + N G SF +
Sbjct: 1104 KKK--NPDGS--WEDWVMAAYQDRVSLSTTGFY-------RTPNLG-----YSFETNSGN 1147
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F YG S+VEI+ LTG+
Sbjct: 1148 AFHYFT------------------------------------YGVACSEVEIDCLTGDHK 1171
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F LEE + +G + + G TYKIP
Sbjct: 1172 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPEGSLHTRGPSTYKIPAF 1231
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +KK + +SKA GEPPL L SV A + AIR AR
Sbjct: 1232 GSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAAR----AQHTNN 1287
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1288 NTKELFRLDSPATPEKIRNAC 1308
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 129 NQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR + KL
Sbjct: 1 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKL 40
>pdb|2E3T|A Chain A, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
pdb|2E3T|B Chain B, Crystal Structure Of Rat Xanthine Oxidoreductase Mutant
(W335a And F336l)
Length = 1331
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 266/801 (33%), Positives = 419/801 (52%), Gaps = 88/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L V ST+ +I S++ ++K +PG FL+ +D+P N
Sbjct: 588 GEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPGFVCFLTAEDVP----NS 643
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
+ F E +FA + C G I VVADT + A RAA + Y+ +L P I+++++
Sbjct: 644 NATGLFNDETVFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKITYE--DL-PAIITIQD 700
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +AVP E
Sbjct: 701 AINNNSFYGSEIKI---EKGDLKKGFSEADN-VVSGELYIGGQEHFYLETNCTIAVPKGE 756
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ ++ S Q + +A+ LG+P++ + V +R+GGGFGGK ++ V+TA ALAA
Sbjct: 757 AGEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAA 816
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
+K RPVR ++R DM++ GGRHP +Y VGF G + AL++ + G D+S +
Sbjct: 817 HKTGRPVRCMLDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRS 876
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNLPS TA R G QG IAE + VA T +
Sbjct: 877 IMERALFHMDNAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGL 936
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + +LE +T+P WD SS + R +++FNR N
Sbjct: 937 PAEEVRRKNMYKEGDLTHFNQ----KLEGFTLPRCWDECIASSQYLARKREVEKFNRENC 992
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + +P ++ G V + +DGSV++ GG E+GQGL TK+ Q+A+
Sbjct: 993 WKKRGLCIIPTKFGISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASR 1052
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + T +V TA S ++ + Q V C+ +++RL P
Sbjct: 1053 ALKIPT--------SKIHISETSTNTVPNTSPTAASASADLNGQGVYEACQTILKRLEPF 1104
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ + WE + AY +VSLSA+ Y K N G SF +
Sbjct: 1105 KKK----KPTGPWEAWVMDAYTSAVSLSATGFY-------KTPNLG-----YSFETNSGN 1148
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F++ + CS +VEI+ LTG+
Sbjct: 1149 PFHYFSYGV-------------------------ACS-----------EVEIDCLTGDHK 1172
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F +EE + +G + + G TYKIP
Sbjct: 1173 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTMEELHYSPEGSLHTRGPSTYKIPAF 1232
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +K+ + +SKA GEPPL LA S+ A + AIR AR
Sbjct: 1233 GSIPIEFRVSLLRDCPNKRAIYASKAVGEPPLFLASSIFFAIKDAIRAAR-----AQHGD 1287
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1288 NAKQLFQLDSPATPEKIRNAC 1308
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAAD 103
++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 129 NQPEP-------TVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR KL
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKL 41
>pdb|1WYG|A Chain A, Crystal Structure Of A Rat Xanthine Dehydrogenase Triple
Mutant (C535a, C992r And C1324s)
Length = 1331
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 266/801 (33%), Positives = 419/801 (52%), Gaps = 88/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L V ST+ +I S++ ++K +PG FL+ +D+P N
Sbjct: 588 GEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPGFVCFLTAEDVP----NS 643
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
+ F E +FA + C G I VVADT + A RAA + Y+ +L P I+++++
Sbjct: 644 NATGLFNDETVFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKITYE--DL-PAIITIQD 700
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +AVP E
Sbjct: 701 AINNNSFYGSEIKI---EKGDLKKGFSEADN-VVSGELYIGGQEHFYLETNCTIAVPKGE 756
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ ++ S Q + +A+ LG+P++ + V +R+GGGFGGK ++ V+TA ALAA
Sbjct: 757 AGEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAA 816
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
+K RPVR ++R DM++ GGRHP +Y VGF G + AL++ + G D+S +
Sbjct: 817 HKTGRPVRCMLDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRS 876
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNLPS TA R G QG IAE + VA T +
Sbjct: 877 IMERALFHMDNAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGL 936
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + +LE +T+P WD SS + R +++FNR N
Sbjct: 937 PAEEVRRKNMYKEGDLTHFNQ----KLEGFTLPRCWDECIASSQYLARKREVEKFNRENR 992
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + +P ++ G V + +DGSV++ GG E+GQGL TK+ Q+A+
Sbjct: 993 WKKRGLCIIPTKFGISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASR 1052
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + T +V TA S ++ + Q V C+ +++RL P
Sbjct: 1053 ALKIPT--------SKIHISETSTNTVPNTSPTAASASADLNGQGVYEACQTILKRLEPF 1104
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ + WE + AY +VSLSA+ Y K N G SF +
Sbjct: 1105 KKK----KPTGPWEAWVMDAYTSAVSLSATGFY-------KTPNLG-----YSFETNSGN 1148
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F++ + CS +VEI+ LTG+
Sbjct: 1149 PFHYFSYGV-------------------------ACS-----------EVEIDCLTGDHK 1172
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F +EE + +G + + G TYKIP
Sbjct: 1173 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTMEELHYSPEGSLHTRGPSTYKIPAF 1232
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +K+ + +SKA GEPPL LA S+ A + AIR AR
Sbjct: 1233 GSIPIEFRVSLLRDCPNKRAIYASKAVGEPPLFLASSIFFAIKDAIRAAR-----AQHGD 1287
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1288 NAKQLFQLDSPATPEKIRNAC 1308
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAAD 103
++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 129 NQPEP-------TVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR KL
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKL 41
>pdb|3AN1|A Chain A, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
pdb|3AN1|B Chain B, Crystal Structure Of Rat D428a Mutant, Urate Bound Form
Length = 1331
Score = 413 bits (1062), Expect = e-115, Method: Compositional matrix adjust.
Identities = 266/801 (33%), Positives = 419/801 (52%), Gaps = 88/801 (10%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI 218
GEA++ DDIP N L V ST+ +I S++ ++K +PG FL+ +D+P N
Sbjct: 588 GEAVYCDDIPRYENELSLRLVTSTRAHAKITSIDTSEAKKVPGFVCFLTAEDVP----NS 643
Query: 219 GSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEE 278
+ F E +FA + C G I VVADT + A RAA + Y+ +L P I+++++
Sbjct: 644 NATGLFNDETVFAKDEVTCVGHIIGAVVADTPEHAQRAARGVKITYE--DL-PAIITIQD 700
Query: 279 AVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-E 337
A+ +SF+ + GD+ KG +EAD+ ++S E+ +G Q +FY+ET +AVP E
Sbjct: 701 AINNNSFYGSEIKI---EKGDLKKGFSEADN-VVSGELYIGGQEHFYLETNCTIAVPKGE 756
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+ ++ S Q + +A+ LG+P++ + V +R+GGGFGGK ++ V+TA ALAA
Sbjct: 757 AGEMELFVSTQNTMKTQSFVAKMLGVPDNRIVVRVKRMGGGFGGKETRSTVVSTALALAA 816
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPN 457
+K RPVR ++R DM++ GGRHP +Y VGF G + AL++ + G D+S +
Sbjct: 817 HKTGRPVRCMLDRDEDMLITGGRHPFLAKYKVGFMKTGTVVALEVAHFSNGGNTEDLSRS 876
Query: 458 IPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
I + + Y + ++C+TNLPS TA R G QG IAE + VA T +
Sbjct: 877 IMERALFHMDNAYKIPNIRGTGRICKTNLPSNTAFRGFGGPQGMLIAEYWMSEVAITCGL 936
Query: 517 EVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNL 576
+ VR N++ L F + +LE +T+P WD SS + R +++FNR N
Sbjct: 937 PAEEVRRKNMYKEGDLTHFNQ----KLEGFTLPRCWDECIASSQYLARKREVEKFNRENC 992
Query: 577 WRKKGISRVP----IVYDVPLMSTPGK-VSILSDGSVVVEVGGIELGQGLWTKVKQMAAF 631
W+K+G+ +P I + +P ++ G V + +DGSV++ GG E+GQGL TK+ Q+A+
Sbjct: 993 WKKRGLCIIPTKFGISFTLPFLNQGGALVHVYTDGSVLLTHGGTEMGQGLHTKMVQVASR 1052
Query: 632 ALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPL 691
AL + + + T +V TA S ++ + Q V C+ +++RL P
Sbjct: 1053 ALKIPT--------SKIHISETSTNTVPNTSPTAASASADLNGQGVYEACQTILKRLEPF 1104
Query: 692 RERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDC 751
+++ + WE + AY +VSLSA+ Y K N G SF +
Sbjct: 1105 KKK----KPTGPWEAWVMDAYTSAVSLSATGFY-------KTPNLG-----YSFETNSGN 1148
Query: 752 FSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETT 811
H+F++ + CS +VEI+ LTG+
Sbjct: 1149 PFHYFSYGV-------------------------ACS-----------EVEIDCLTGDHK 1172
Query: 812 IVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTL 871
+++DI+ D G SLNPA+D+GQ+EG+FVQG+G F +EE + +G + + G TYKIP
Sbjct: 1173 NLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTMEELHYSPEGSLHTRGPSTYKIPAF 1232
Query: 872 DTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXXX 931
+IP +F V +L +K+ + +SKA GEPPL LA S+ A + AIR AR
Sbjct: 1233 GSIPIEFRVSLLRDCPNKRAIYASKAVGEPPLFLASSIFFAIKDAIRAAR-----AQHGD 1287
Query: 932 XXXXTFDLEVPATVQVVKELC 952
F L+ PAT + ++ C
Sbjct: 1288 NAKQLFQLDSPATPEKIRNAC 1308
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 7/44 (15%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAAD 103
++PEP T+ E E A GNLCRCTGYRPI ++FA D
Sbjct: 129 NQPEP-------TVEEIENAFQGNLCRCTGYRPILQGFRTFAKD 165
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR KL
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLVYLRRKLGLCGTKL 41
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 351 bits (900), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 259/802 (32%), Positives = 412/802 (51%), Gaps = 94/802 (11%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKSLP--GVSAFLSYKDIPEAGQN 217
GEA+F DD+ L+ A V S+K +I S++ S++L GV ++ +D+P G N
Sbjct: 595 GEAVFCDDMSVLPGELFLAVVTSSKSHAKIISLD-ASEALASLGVVDVVTARDVP--GDN 651
Query: 218 IGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVE 277
R + E L+A + C GQ + V AD+ A +AA + Y ++EP I++V+
Sbjct: 652 --GREE---ESLYAQDEVICVGQIVCAVAADSYAHAQQAAKKVKIVYQ--DIEPMIVTVQ 704
Query: 278 EAVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPD- 336
+A+ SF L G++ + AD +IL EV LG Q +FYMETQ+ VP
Sbjct: 705 DALQYESFIGPERKL---EQGNVEEAFQCAD-QILEGEVHLGGQEHFYMETQSVRVVPKG 760
Query: 337 EDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALA 396
ED + +Y S Q + +AR LGIP++ + +RVGG FGGKA K +A+ A+A
Sbjct: 761 EDKEMDIYVSSQDAAFTQEMVARTLGIPKNRINCHVKRVGGAFGGKASKPGLLASVAAVA 820
Query: 397 AYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP 456
A K RP+R + R+ DM++ GGRHP+ +Y +GF +NGKI A + + I+ G PD S
Sbjct: 821 AQKTGRPIRFILERRDDMLITGGRHPLLGKYKIGFMNNGKIKAADIQLYINGGCTPDDSE 880
Query: 457 NIPAYMIGALKK-YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLS 515
+ Y + L+ Y L +VC+TNLPS TA R G QG+F+ E + VA+
Sbjct: 881 LVIEYALLKLENAYKIPNLRVRGRVCKTNLPSNTAFRGFGFPQGAFVTETCMSAVAAKCR 940
Query: 516 MEVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSN 575
+ + VR +N++ + + E + + W+ +SS+ R + + EFN+
Sbjct: 941 LPPEKVRELNMYRTIDRTIHNQ----EFDPTNLLQCWEACVENSSYYNRKKAVDEFNQQR 996
Query: 576 LWRKKGISRVPIVYDVPLMST-----PGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAA 630
W+K+GI+ +P+ + V T V I +DGSV+V GG+ELGQG+ TK+ Q+A+
Sbjct: 997 FWKKRGIAIIPMKFSVGFPKTFYYQAAALVQIYTDGSVLVAHGGVELGQGINTKMIQVAS 1056
Query: 631 FALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTP 690
L + + + + T++V T ST ++ + +AV+N C+IL++RL P
Sbjct: 1057 RELKIP--------MSYIHLDEMSTVTVPNTVTTGASTGADVNGRAVQNACQILMKRLEP 1108
Query: 691 LRERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMD 750
+ + Q S WE +++A++QS+SLSA+ + + MD
Sbjct: 1109 IIK----QNPSGTWEEWVKEAFVQSISLSATGYFR------------------GYQADMD 1146
Query: 751 CFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGET 810
+ I PY +++GA S+VEI+ LTG
Sbjct: 1147 -------------------------WEKGEGDIFPY-----FVFGAACSEVEIDCLTGAH 1176
Query: 811 TIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPT 870
+++DI+ D S+NPAVD+GQIEG+FVQG+G + LEE + +G++ + G YKI +
Sbjct: 1177 KNIRTDIVMDGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPEGVLYTRGPHQYKIAS 1236
Query: 871 LDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKXXXXXXXX 930
+ IP++F+V +L + K + SSK GE L SV A AA+ AR+
Sbjct: 1237 VTDIPEEFHVSLLTPTPNPKAIYSSKGLGEAGTFLGCSVFFAIAAAVAAARE-------E 1289
Query: 931 XXXXXTFDLEVPATVQVVKELC 952
+ + PAT +V++ C
Sbjct: 1290 RGLSPIWAINSPATAEVIRMAC 1311
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 7/41 (17%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSF 100
+ PEP + + + + GNLCRCTGYRPI ++ KSF
Sbjct: 134 NHPEP-------STEQIMETLGGNLCRCTGYRPIVESAKSF 167
>pdb|1JRO|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|B Chain B, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|D Chain D, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|F Chain F, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|H Chain H, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|2W3R|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|B Chain B, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|D Chain D, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|F Chain F, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|H Chain H, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
Length = 777
Score = 285 bits (730), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 241/797 (30%), Positives = 374/797 (46%), Gaps = 114/797 (14%)
Query: 159 VGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKS-KSLPGVSAFLSYKDIPEAGQN 217
G+A ++DD+P P N L+ AF ST+ I ++++ + PGV A + D+P N
Sbjct: 17 TGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPH--DN 74
Query: 218 IGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVE 277
S PEP+ A H GQPI V A + + A AA A + Y P IL+++
Sbjct: 75 DASPAP-SPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITY---APRPAILTLD 130
Query: 278 EAVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE 337
+A+ S FE ++ + GD+ + A H + ++G Q +FY+E Q ALA+P E
Sbjct: 131 QALAADSRFEGGPVIWAR--GDVETALAGAAH-LAEGCFEIGGQEHFYLEGQAALALPAE 187
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+V++ S Q P +A LG+ H+VRV RR+GGGFGGK + +A ACA+AA
Sbjct: 188 GG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKESQGNHLAIACAVAA 246
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVS-P 456
RP ++ +R DMV+ G RH +I Y +G ++GK+ L G D+S P
Sbjct: 247 RATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLP 306
Query: 457 NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
M+ A Y AL + RTN S TA R G QG+ E IEH+A +
Sbjct: 307 VCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGR 366
Query: 517 EVDFVRSINLH-------------------THNSLNLFYESSAGELEEYTIPLIWDRLAV 557
+ +R++N + T + Y E+ + + + RL
Sbjct: 367 DPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQ---EVADCVLGELVTRLQK 423
Query: 558 SSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLMST-----PGKVSILSDGSVVVEV 612
S++F R I +N +N +GI+ P+ + + T V I +DGSV +
Sbjct: 424 SANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNH 483
Query: 613 GGIELGQGLWTKVKQMAA--FALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKS 670
GG E+GQGL K+ Q+AA + +Q VR+ DT V TA S+ +
Sbjct: 484 GGTEMGQGLHAKMVQVAAAVLGIDPVQ----------VRITATDTSKVPNTSATAASSGA 533
Query: 671 EASCQAVRNCCKILVERLTPL---RE------------RLQAQMGSVKWETLIQQAYLQS 715
+ + AV++ C+ L RL RE ++QA S ++ ++ AY+
Sbjct: 534 DMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMAR 593
Query: 716 VSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLI 775
+SLSA+ Y A ++S+ L + +
Sbjct: 594 ISLSATGFY--------------ATPKLSWDR-------------------LRGQGRPFL 620
Query: 776 YHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIE 835
Y + YGA +++V I+ LTGE I+++DI++D G SLNPA+D+GQIE
Sbjct: 621 Y---------------FAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIE 665
Query: 836 GSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSS 895
G++VQG G+ EE + G +++ TYKIP P+ FNV + + + ++ + S
Sbjct: 666 GAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRS 725
Query: 896 KASGEPPLLLAVSVHCA 912
KA GEPP LL +S A
Sbjct: 726 KAVGEPPFLLGISAFLA 742
>pdb|2W55|B Chain B, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|D Chain D, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|F Chain F, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|H Chain H, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 777
Score = 285 bits (729), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 241/797 (30%), Positives = 374/797 (46%), Gaps = 114/797 (14%)
Query: 159 VGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKS-KSLPGVSAFLSYKDIPEAGQN 217
G+A ++DD+P P N L+ AF ST+ I ++++ + PGV A + D+P N
Sbjct: 17 TGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPH--DN 74
Query: 218 IGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVE 277
S PEP+ A H GQPI V A + + A AA A + Y P IL+++
Sbjct: 75 DASPAP-SPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITY---APRPAILTLD 130
Query: 278 EAVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE 337
+A+ S FE ++ + GD+ + A H + ++G Q +FY+E Q ALA+P E
Sbjct: 131 QALAADSRFEGGPVIWAR--GDVETALAGAAH-LAEGCFEIGGQEHFYLEGQAALALPAE 187
Query: 338 DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAA 397
+V++ S Q P +A LG+ H+VRV RR+GGGFGGK + +A ACA+AA
Sbjct: 188 GG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGKQSQGNHLAIACAVAA 246
Query: 398 YKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVS-P 456
RP ++ +R DMV+ G RH +I Y +G ++GK+ L G D+S P
Sbjct: 247 RATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLP 306
Query: 457 NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSM 516
M+ A Y AL + RTN S TA R G QG+ E IEH+A +
Sbjct: 307 VCDRAMLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGR 366
Query: 517 EVDFVRSINLH-------------------THNSLNLFYESSAGELEEYTIPLIWDRLAV 557
+ +R++N + T + Y E+ + + + RL
Sbjct: 367 DPAELRALNFYDPPERGGLSAPPSPPEPIATKKTQTTHYGQ---EVADCVLGELVTRLQK 423
Query: 558 SSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLMST-----PGKVSILSDGSVVVEV 612
S++F R I +N +N +GI+ P+ + + T V I +DGSV +
Sbjct: 424 SANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAGALVQIYTDGSVALNH 483
Query: 613 GGIELGQGLWTKVKQMAA--FALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKS 670
GG E+GQGL K+ Q+AA + +Q VR+ DT V TA S+ +
Sbjct: 484 GGTEMGQGLHAKMVQVAAAVLGIDPVQ----------VRITATDTSKVPNTSATAASSGA 533
Query: 671 EASCQAVRNCCKILVERLTPL---RE------------RLQAQMGSVKWETLIQQAYLQS 715
+ + AV++ C+ L RL RE ++QA S ++ ++ AY+
Sbjct: 534 DMNGMAVKDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMAR 593
Query: 716 VSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLI 775
+SLSA+ Y A ++S+ L + +
Sbjct: 594 ISLSATGFY--------------ATPKLSWDR-------------------LRGQGRPFL 620
Query: 776 YHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIE 835
Y + YGA +++V I+ LTGE I+++DI++D G SLNPA+D+GQIE
Sbjct: 621 Y---------------FAYGAAITEVVIDRLTGENRILRTDILHDAGASLNPALDIGQIE 665
Query: 836 GSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSS 895
G++VQG G+ EE + G +++ TYKIP P+ FNV + + + ++ + S
Sbjct: 666 GAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRS 725
Query: 896 KASGEPPLLLAVSVHCA 912
KA GEPP LL +S A
Sbjct: 726 KAVGEPPFLLGISAFLA 742
>pdb|3HRD|A Chain A, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|E Chain E, Crystal Structure Of Nicotinate Dehydrogenase
Length = 425
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 108/383 (28%), Positives = 166/383 (43%), Gaps = 32/383 (8%)
Query: 159 VGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYKDIPEAGQN 217
+G A F D P + LY ST P RI S+++ K++++ GV A L Y IP G+N
Sbjct: 22 MGTAKFAADYSFP-DMLYAGVFRSTVPHARIVSLDLSKARAIDGVEAVLDYHAIP--GKN 78
Query: 218 IGSRTKFG----PEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPI 273
+FG EP D+ G IA V A T + A D ++Y+ LE I
Sbjct: 79 -----RFGIIIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEALDAITIEYE--ELEG-I 130
Query: 274 LSVEEAV--------GRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLGSQYYFY 325
++E A+ G ++ +V Y GD+ + D ++ + +
Sbjct: 131 FTMERALEEDSPAIHGDTNIHQVKHLEY----GDVDAAFKQCD-IVVEDTYSTHRLTHMF 185
Query: 326 METQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIK 385
+E ++ D + L V S Q P Y +A L +P VR+I GGGFGGK
Sbjct: 186 IEPDAGVSYYDNEGMLTVVVSTQNPHYDRGEVAGMLALPNSKVRIIQATTGGGFGGKL-- 243
Query: 386 AMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNIL 445
+ V CAL Y +PV++ +R+ ++ RHPM + G +G++ A+Q+ +
Sbjct: 244 DLSVQCHCALLTYHTKKPVKMVRSREESTTVSSKRHPMTMHCKTGATKDGRLQAVQVEMF 303
Query: 446 IDAGQYPDVSPN-IPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAE 504
D G Y P I + + Y + D K TN P A R G Q S E
Sbjct: 304 GDTGAYASYGPAVITRATVHCMGPYVVPNVRVDAKFVYTNNPMSGAFRGFGVPQASVCHE 363
Query: 505 AVIEHVASTLSMEVDFVRSINLH 527
+ +A L M+ +R +N H
Sbjct: 364 GQMNALAKALGMDPIDIRILNAH 386
>pdb|1RM6|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|A Chain A, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|D Chain D, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 769
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 175/752 (23%), Positives = 302/752 (40%), Gaps = 97/752 (12%)
Query: 160 GEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKS-KSLPGVSAFLSYKDIPEAGQNI 218
G+A + DI +P + L G + S RI +++ + ++L GV A + + P
Sbjct: 26 GKAKYTADIAAP-DALVGRILRSPHAHARILAIDTSAAEALEGVIAVCTGAETP------ 78
Query: 219 GSRTKFGPEPL------FADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPP 272
FG P+ A + G P+A V A + A +A L VDY+V P
Sbjct: 79 ---VPFGVLPIAENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDYEV---LPA 132
Query: 273 ILSVEEAVGRSSFF---EVPSFLYPK---SVGDISKGMNEADHKILSAEVKLGSQYYFYM 326
++ + A+ + + P+ + + GD++ EAD I + +M
Sbjct: 133 YMTPKAAMKAGAIALHDDKPNNILREVHAEFGDVAAAFAEAD-LIREKTYTFAEVNHVHM 191
Query: 327 ETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIK 385
E LA D + L + ++ Q P Y H +A CL + +RVI +GGGFG + +
Sbjct: 192 ELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLGGGFGART-E 250
Query: 386 AMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNIL 445
A+ L A K VR+ R+ + GR +++ +G K +GKI AL L
Sbjct: 251 ALHFEIIAGLLARKAKGTVRLLQTREETFIAHRGRPWTEVKMKIGLKKDGKIAALALEAT 310
Query: 446 IDAGQYPDVSPNIPAYMIGALKK--YDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIA 503
G Y I GAL Y A+ D TN P AMR G V
Sbjct: 311 QAGGAYAGYG-IITILYTGALMHGLYHIPAIKHDAWRVYTNTPPCGAMRGHGTVDTRAAF 369
Query: 504 EAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGELEEYTIPLIWDRLAVSSSFNQ 563
EA++ + L ++ +R IN+ Y A + Y +P +++ +S + +
Sbjct: 370 EALLTEMGEELGIDSLKIRQINMLPQIPYVTMY---AQRVMSYGVPECLEKVKAASGWEE 426
Query: 564 RTEVIKEFNRSNLWRKKGISRVPIVYDVPLMSTPG----------KVSILSDGSVVVEVG 613
R + L + +G+ + + + V STP + + DG + + G
Sbjct: 427 R--------KGKLPKGRGLG-IALSHFVSGTSTPKHWTGEPHATVNLKLDFDGGITLLTG 477
Query: 614 GIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEAS 673
++GQG T Q+AA L G L +RVI AD+ + GS S +
Sbjct: 478 AADIGQGSNTMASQVAAEVL--------GVRLSRIRVISADSALTPKDN---GSYSSRVT 526
Query: 674 CQAVRNCCKILVERLTPLRERLQAQMGSVKWETL--IQQAYLQSVSLSASSLYLPDFTSM 731
V N E L + + A+ + E + I + ++ S S L +
Sbjct: 527 FM-VGNASISAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQD-PGLSFQEVVKA 584
Query: 732 KYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLK 791
++ G + +++ C + F K S+I +T+
Sbjct: 585 AMVDSGTITVKGTYT----CPTEFQGDKKIRGSAI--------------------GATMG 620
Query: 792 YIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYP 851
+ Y A + + ++ +TG+ T + + D G++LNP GQ +G G+G + EE
Sbjct: 621 FCYAAQVVEASVDEITGKVTAHKVWVAVDVGKALNPLAVEGQTQGGVWMGMGQALSEET- 679
Query: 852 TNSDGLVVSEGTWTYKIPTLDTIPKQFNVEIL 883
+G +V Y++PT+ P ++E++
Sbjct: 680 VYDNGRMVHGNILDYRVPTIVESP---DIEVI 708
>pdb|1FFU|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|B Chain B, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|E Chain E, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 803
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 182/834 (21%), Positives = 318/834 (38%), Gaps = 124/834 (14%)
Query: 133 QFDKSKVLTLLSSAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSV 192
Q +++ L L +R F G+ +VDDI P L+ V + RI+ +
Sbjct: 6 QDAEARELALAGMGASRLRKEDARFIQGKGNYVDDIKMP-GMLHMDIVRAPIAHGRIKKI 64
Query: 193 EIKSK-SLPGVSAFLSYKDIPEAGQNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQK 251
+ ++PGV A L+ +D+ + + ADE H Q +A V+AD +
Sbjct: 65 HKDAALAMPGVHAVLTAEDLKPLKLHWMPTLAGDVAAVLADEKVHFQMQEVAIVIADDRY 124
Query: 252 IANRAADLAVVDYD--------VGNLEP--PILSVEEAVGRSSFFEVP----SFLYPKSV 297
IA A + V+YD + L+P P+L E+ G++S P + ++
Sbjct: 125 IAADAVEAVKVEYDELPVVIDPIDALKPDAPVLR-EDLAGKTSGAHGPREHHNHIFTWGA 183
Query: 298 GDISKGMNEADHKILSAEVKLGSQYYFY-------METQTALAVPDE-DNCLVVYSSIQC 349
GD + D +A V + SQ+ +Y +ET +A D L Y + Q
Sbjct: 184 GDKAA----TDAVFANAPVTV-SQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQA 238
Query: 350 PEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVN 409
P ++ GIPE VR+++ +GGGFG K + P +A+ L RPV+ +
Sbjct: 239 PHVVRTVVSMLSGIPESKVRIVSPDIGGGFGNK-VGIYPGYVCAIVASIVLGRPVKWVED 297
Query: 410 RKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPNIPAYMIGALK-- 467
R ++ ++ + +GKI L++N++ D G + D + + G
Sbjct: 298 RVENISTTAFARDYHMDGELAATPDGKILGLRVNVVADHGAF-DACADPTKFPAGLFHIC 356
Query: 468 --KYDWGALHFDIKVCRTNLPSRTAMRAPGEV---------QGSFIAEAVIEHVASTLSM 516
YD H +K TN +APG V + ++ E +++ +A L+M
Sbjct: 357 SGSYDIPRAHCSVKGVYTN-------KAPGGVAYXXSFRVTEAVYLIERMVDVLAQKLNM 409
Query: 517 EV------DFVRSINLHTHNSLNLFYESSAGELEEYTIPL--IWDRLAVSSSFNQRTEVI 568
+ +F+R Y+S +Y L + D + + ++
Sbjct: 410 DKAEIRAKNFIRKEQFPYTTQFGFEYDSG-----DYHTALKKVLDAVDYPALRAEQAARR 464
Query: 569 KEFNRSNLWRKKGISRVPIVYDVPL---------MSTPGKVSILSDGSVVVEVGGIELGQ 619
+ N L ++ +V P M ++ I GS + +G I GQ
Sbjct: 465 ADPNSPTLMGIGLVTFTEVVGAGPSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQ 524
Query: 620 GLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRN 679
G T Q+ A L G E ++V + DT + G T GS + + A+
Sbjct: 525 GHQTTYAQIIATEL--------GIPSEVIQVEEGDTSTAPYGLGTYGSRSTPVAGAAIAL 576
Query: 680 CCKILVERLTPLRERLQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAA 739
+ ++ ++ A M V L D+ ++ G
Sbjct: 577 AAR----KIHAKARKIAAHMLEVNENDL-------------------DWEVDRFKVKG-- 611
Query: 740 VSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMS 799
+ F D A++ + + L +++ D Y +G +
Sbjct: 612 -DDSKFKTMAD-----IAWQAYHQPPAGLEPGLEAVHYYDP-------PNFTYPFGIYLC 658
Query: 800 QVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVV 859
V+I+ TGET + + + DCG +NP + GQI G +G M ++ P ++ G ++
Sbjct: 659 VVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLL 718
Query: 860 SEGTWTYKIPTLDTIPK-QFNVEILNSGHH---KKRVLSSKASGEPPLLLAVSV 909
Y +PT P + + + S HH K V S G P A V
Sbjct: 719 GNTLMDYFLPTAVETPHWETDHTVTPSPHHPIGAKGVAESPHVGSIPTFTAAVV 772
>pdb|1N5W|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|B Chain B, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|E Chain E, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|B Chain B, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|E Chain E, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
Length = 809
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 168/405 (41%), Gaps = 38/405 (9%)
Query: 151 RLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYK 209
R+ F G+ +VDD+ P L+G FV S+ RI+S++ K+K+LPGV A L+
Sbjct: 27 RVEDIRFTQGKGNYVDDVKLP-GMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAA 85
Query: 210 DIPEAGQNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYD---- 265
D+ + + + ADE Q +AFVVA + +A A +L VDY+
Sbjct: 86 DLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPV 145
Query: 266 ----VGNLEP--PILS---VEEAVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEV 316
+EP P+L ++ G + + ++ +GD D AEV
Sbjct: 146 LVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGD----KEGTDATFAKAEV 201
Query: 317 KLGSQYYFY------METQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVR 369
+ ++ +ET +A D+ L ++ + Q P ++ G+PEH +
Sbjct: 202 VSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIH 261
Query: 370 VITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNV 429
VI +GGGFG K + A +A+ L PV+ +R ++ + +
Sbjct: 262 VIAPDIGGGFGNK-VGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTEL 320
Query: 430 GFKSNGKITALQLNILIDAGQY---PDVSPNIPAYMIGALKKYDWGALHFDIKVCRTNLP 486
+GKI A++ ++L D G + D S +M YD H + TN
Sbjct: 321 AATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKA 380
Query: 487 S-----RTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINL 526
S R + R + + E IE +A L M+ +R N
Sbjct: 381 SGGVAYRCSFRV---TEAVYAIERAIETLAQRLEMDSADLRIKNF 422
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 789 TLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLE 848
+ Y +GA ++I++ TG + + DCG +NP + GQ+ G + M +
Sbjct: 654 NMTYPFGAYFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQ 713
Query: 849 EYPTNSDGLVVSEGTWTYKIPTLDTIPK-QFNVEILNSGHHKKRVLSSKASGEPPLLLAV 907
E + G V+ + +PT PK + + + S HH + +K GE P + V
Sbjct: 714 EIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHP---IGAKGVGESPHVGGV 770
>pdb|1ZXI|B Chain B, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|E Chain E, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 809
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 101/405 (24%), Positives = 168/405 (41%), Gaps = 38/405 (9%)
Query: 151 RLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPGVSAFLSYK 209
R+ F G+ +VDD+ P L+G FV S+ RI+S++ K+K+LPGV A L+
Sbjct: 27 RVEDIRFTQGKGNYVDDVKLP-GMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAA 85
Query: 210 DIPEAGQNIGSRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYD---- 265
D+ + + + ADE Q +AFVVA + +A A +L VDY+
Sbjct: 86 DLKPLNLHYMPTLAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDYEPLPV 145
Query: 266 ----VGNLEP--PILS---VEEAVGRSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEV 316
+EP P+L ++ G + + ++ +GD D AEV
Sbjct: 146 LVDPFKAMEPDAPLLREDIKDKMTGAHGARKHHNHIFRWEIGD----KEGTDATFAKAEV 201
Query: 317 KLGSQYYFY------METQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVR 369
+ ++ +ET +A D+ L ++ + Q P ++ G+PEH +
Sbjct: 202 VSKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLISGLPEHKIH 261
Query: 370 VITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNV 429
VI +GGGFG K + A +A+ L PV+ +R ++ + +
Sbjct: 262 VIAPDIGGGFGNK-VGAYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTEL 320
Query: 430 GFKSNGKITALQLNILIDAGQY---PDVSPNIPAYMIGALKKYDWGALHFDIKVCRTNLP 486
+GKI A++ ++L D G + D S +M YD H + TN
Sbjct: 321 AATKDGKILAMRCHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKA 380
Query: 487 S-----RTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINL 526
S R + R + + E IE +A L M+ +R N
Sbjct: 381 SGGVAYRCSFRV---TEAVYAIERAIETLAQRLEMDSADLRIKNF 422
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 789 TLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLE 848
+ Y +GA ++I++ TG + + DCG +NP + GQ+ G + M +
Sbjct: 654 NMTYPFGAYFCIMDIDIDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQ 713
Query: 849 EYPTNSDGLVVSEGTWTYKIPTLDTIPK-QFNVEILNSGHHKKRVLSSKASGEPPLLLAV 907
E + G V+ + +PT PK + + + S HH + +K GE P + V
Sbjct: 714 EIRYDEQGNVLGASFMDFFLPTAVETPKWETDYTVTPSPHHP---IGAKGVGESPHVGGV 770
>pdb|1SIJ|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
pdb|1VLB|A Chain A, Structure Refinement Of The Aldehyde Oxidoreductase From
Desulfovibrio Gigas At 1.28 A
pdb|3FAH|A Chain A, Glycerol Inhibited Form Of Aldehyde Oxidoreductase From
Desulfovibrio Gigas
pdb|3FC4|A Chain A, Ethylene Glycol Inhibited Form Of Aldehyde Oxidoreductase
From Desulfovibrio Gigas
pdb|3L4P|A Chain A, Crystal Structure Of The Aldehyde Dehydrogenase (A.K.A.
Aor Or Mop) Of Desulfovibrio Gigas Covalently Bound To
[aso3]-
Length = 907
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 141/627 (22%), Positives = 245/627 (39%), Gaps = 67/627 (10%)
Query: 83 NLCRCTGYRPIADACKSFAADVDIEDLGDRLCGYSNSVLLKDSLMQQNHEQFDKSKVLTL 142
N CRCTGY+P+ DA AA ++ G L+ + K T
Sbjct: 135 NACRCTGYKPLVDAVMDAAAVIN---------GKKPETDLEFKMPADGRIWGSKYPRPTA 185
Query: 143 LSSAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KSKSLPG 201
++ + + + P L+ A V + I+ ++ ++ ++PG
Sbjct: 186 VAKVTGTLDYGADL----------GLKMPAGTLHLAMVQAKVSHANIKGIDTSEALTMPG 235
Query: 202 VSAFLSYKDIPEAGQNIG------SRTKFGPEPLFADELTHCAGQPIAFVVADTQKIANR 255
V + +++KD+ + G ++ P+ DE G IA V AD++ A
Sbjct: 236 VHSVITHKDVKGKNRITGLITFPTNKGDGWDRPILCDEKVFQYGDCIALVCADSEANARA 295
Query: 256 AADLAVVDYDVGNLE--PPILSVEEAVGRSSFFEVPS-----FLYPKSVGDISKGMNEAD 308
AA+ VD LE P +S A + P F P G+ + + +
Sbjct: 296 AAEKVKVD-----LEELPAYMSGPAAAAEDAIEIHPGTPNVYFEQPIVKGEDTGPIFASA 350
Query: 309 HKILSAEVKLGSQYYFYMETQTALA-VPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHN 367
+ + +G Q + +E A A + D+ C + SI + + IA +G+
Sbjct: 351 DVTVEGDFYVGRQPHMPIEPDVAFAYMGDDGKCYIHSKSIGVHLHLY-MIAPGVGLEPDQ 409
Query: 368 VRVITRRVGGGFGGKAIKAMPVATA-CALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIE 426
+ ++ +GG FG K P + A A+AA RPV + N + G R P ++
Sbjct: 410 LVLVANPMGGTFG---YKFSPTSEALVAVAAMATGRPVHLRYNYQQQQQYTGKRSPWEMN 466
Query: 427 YNVGFKSNGKITALQLNILIDAGQYPDVSPNIP---AYMIGALKKYDWGALHFDIKVCRT 483
K +G + A++ + L+D G Y + + A IGA Y+ + + T
Sbjct: 467 VKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIGA--GYNIPNIRGLGRTVAT 524
Query: 484 NLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGEL 543
N +A R G Q F +E +++ +A L M+ +R N + N + E
Sbjct: 525 NHVWGSAFRGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDTN----PTGQEP 580
Query: 544 EEYTIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVY----DVPLMSTPGK 599
E +++P + D+L + E K S KKG+ VY D P S
Sbjct: 581 EVFSLPDMIDQL--RPKYQAALE--KAQKESTATHKKGVGISIGVYGSGLDGPDASE-AW 635
Query: 600 VSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVI 659
+ +DG++ V + GQG A AL MG E ++ +T +
Sbjct: 636 AELNADGTITVHTAWEDHGQGADIGCVGTAHEALRP-----MGVAPEKIKFTWPNTATTP 690
Query: 660 QGGLTAGSTKSEASCQAVRNCCKILVE 686
G + GS + + A+R C+ L++
Sbjct: 691 NSGPSGGSRQQVMTGNAIRVACENLLK 717
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 10/130 (7%)
Query: 792 YIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYP 851
Y+YG M++V +++ TG+TT+ ++ D G N GQI G QGIG + E++
Sbjct: 766 YMYGVFMAEVTVDVATGQTTVDGMTLMADLGSLCNQLATDGQIYGGLAQGIGLALSEDFE 825
Query: 852 T-NSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVH 910
+V G P + IP + ++ +N + GE PL S H
Sbjct: 826 DIKKHATLVGAG-----FPFIKQIPDKLDIVYVNH-PRPDGPFGASGVGELPL---TSPH 876
Query: 911 CATRAAIREA 920
A AI+ A
Sbjct: 877 AAIINAIKSA 886
>pdb|1DGJ|A Chain A, Crystal Structure Of The Aldehyde Oxidoreductase From
Desulfovibrio Desulfuricans Atcc 27774
Length = 907
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 138/634 (21%), Positives = 250/634 (39%), Gaps = 75/634 (11%)
Query: 83 NLCRCTGYRPIADACKSFAA----DVDIEDLGDRLCGYSNSVLLKDSLMQQNHEQFDKSK 138
N+CRCTGY+P+ DA AA + +E++ ++ ++ + S+ + + +K
Sbjct: 135 NICRCTGYKPLVDAVMDAAAILRGEKTVEEISFKMP--ADGRIWGSSIPRPSA----VAK 188
Query: 139 VLTLLS-SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEI-KS 196
V L A+ +R+ P N L+ A + I+ ++ ++
Sbjct: 189 VTGLAEFGADAALRM------------------PENTLHLALAQAKVSHALIKGIDTSEA 230
Query: 197 KSLPGVSAFLSYKDIPEAGQNIG------SRTKFGPEPLFADELTHCAGQPIAFVVADTQ 250
+ +PGV L++KD+ + G ++ P+ D G +A V AD++
Sbjct: 231 EKMPGVYKVLTHKDVKGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAIVCADSE 290
Query: 251 KIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISKGMNEADHK 310
A AA+ D + L P +S EA+ + P P D + E
Sbjct: 291 ANARAAAEKVKFDLE---LLPEYMSAPEAMAPDAIEIHPG--TPNVYYDQLEEKGEDTVP 345
Query: 311 ILSAEVKLGSQYYFYMETQTALAV-PD-------EDNCLVVYSSIQCPEYAHATIARCLG 362
+ + ++ +Y + Q L + PD E +V++S IA LG
Sbjct: 346 FFNDPANVVAEGSYYTQRQPHLPIEPDVGYGYINEQGQVVIHSKSVAIHLHALMIAPGLG 405
Query: 363 IP-EHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRH 421
+ ++ ++ GG FG K M A+ A RP + N + G R
Sbjct: 406 LEFPKDLVLVQNTTGGTFGYKFSPTMEALVGVAVMATG--RPCHLRYNYEQQQNYTGKRS 463
Query: 422 PMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSPNIP---AYMIGALKKYDWGALHFDI 478
P GKI A++ + +D G Y + + A IGA Y +
Sbjct: 464 PFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGA--GYGIANIRGTG 521
Query: 479 KVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYES 538
+ TN A R G + F +E +++ +A L M+ +R++N + +
Sbjct: 522 RTVATNHCWGAAFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDT-----T 576
Query: 539 SAGELEE-YTIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM--- 594
S+G++ E ++P ++D++ + + + +KE RS K+G+ VY L
Sbjct: 577 SSGQIPEVMSLPEMFDKM--RPYYEESKKRVKE--RSTAEIKRGVGVALGVYGAGLDGPD 632
Query: 595 STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQAD 654
++ V + DGSV + + GQG A AL +G E + ++ D
Sbjct: 633 TSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRP-----LGITPENIHLVMND 687
Query: 655 TLSVIQGGLTAGSTKSEASCQAVRNCCKILVERL 688
T G GS + A+R C++L+E +
Sbjct: 688 TSKTPNSGPAGGSRSQVVTGNAIRVACEMLIEGM 721
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 5/112 (4%)
Query: 792 YIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYP 851
Y+YG +++V + + TG+ T+ + + D G+ N V GQI G QG+G + E+Y
Sbjct: 766 YMYGLFLTEVAVEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQGVGLALSEDY- 824
Query: 852 TNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPL 903
+ L IP++ IP + + + K + GE PL
Sbjct: 825 ---EDLKKHSTMGGAGIPSIKMIPDDIEIVYVET-PRKDGPFGASGVGEMPL 872
>pdb|1T3Q|B Chain B, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|E Chain E, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 788
Score = 82.8 bits (203), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 31/360 (8%)
Query: 188 RIRSVEI-KSKSLPGVSAFLSYKDIPEAGQNI-------GSRTKFGPEPLFADELTHCAG 239
RI S+++ +++LPGV D+ E Q I G +T +PL A+ +T G
Sbjct: 56 RIVSIDVADAQALPGVELVWCGADVAELSQGIVATMQVEGFQTTI--QPLLANGVTRFVG 113
Query: 240 QPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGD 299
+ +A VVA ++ IA AA L V+Y+ P + +E A+ + L V
Sbjct: 114 EIVAVVVASSRAIAEDAAQLIQVEYEE---LPAVTGIEAALEGEA--RANDTLAGNVVSR 168
Query: 300 ISKGMNE------ADHKILSAEVKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPEY 352
S+ +E + ++ + G MET+ A+A + L+++++ Q P +
Sbjct: 169 TSRARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSF 228
Query: 353 AHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKT 412
+A IPEH + V VGGGFG KA P L + L RPVR +R+
Sbjct: 229 VRTMVAMFCAIPEHLIEVRVPDVGGGFGQKA-HLHPEELLVCLLSRALGRPVRWIEDRQE 287
Query: 413 DMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPD------VSPNIPAYMIGAL 466
+ + A + E + F +G+ AL+ + D G Y + V ++ +I L
Sbjct: 288 NFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLPWTQLVESHVGNAVI--L 345
Query: 467 KKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINL 526
Y A+ + TN A R G G E +I+ A L + +R N+
Sbjct: 346 GVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNV 405
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 41/88 (46%)
Query: 788 STLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFML 847
S L G + VEI+ T T + + DCG +NP + GQI G Q IG +L
Sbjct: 633 SDLVLANGGHAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLL 692
Query: 848 EEYPTNSDGLVVSEGTWTYKIPTLDTIP 875
EE + G +V+ Y IPT +P
Sbjct: 693 EEVIYDDFGQLVTTTLMDYLIPTTLDVP 720
>pdb|3HRD|B Chain B, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|F Chain F, Crystal Structure Of Nicotinate Dehydrogenase
Length = 330
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 78/328 (23%), Positives = 135/328 (41%), Gaps = 56/328 (17%)
Query: 600 VSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVI 659
V I DGS V G ++GQG T + Q+AA L G E + V DT+
Sbjct: 28 VEIHGDGSANVMFGAADIGQGSGTAMAQIAAEEL--------GLDYEKIHVTWGDTMVTP 79
Query: 660 QGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQMGSVKWETLIQQAYLQSVSLS 719
GG T+ S ++ + AV C+ QA+ ETL + A + + +
Sbjct: 80 DGGATSASRQTLITGNAVILACR-------------QAK------ETLAKTA-AEKLDCA 119
Query: 720 ASSLYLPDFTSM------KYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLN 773
L D T + + YG ++ + + M + + L+
Sbjct: 120 PEELSFRDNTVFITADPERSMTYGELMAAMKAAGRMAVGAGSYNPNTTGLAP-------- 171
Query: 774 LIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQ 833
+ +P+ Y Y +++VE++ TGE +++ +D G +N ++ GQ
Sbjct: 172 -----ENMSGIPFEV---YSYATTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQ 223
Query: 834 IEGSFVQGIGFFMLEEYPTNS-DGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRV 892
IEG G GF ++EE N+ +G + + Y IP+ +P+ ++ + + G
Sbjct: 224 IEGGVTMGQGFVLMEEIEVNTKNGAIKNPSMSKYIIPSNRDVPEIHSILVESEGGPGP-- 281
Query: 893 LSSKASGEPPLLLAVSVHCATRAAIREA 920
+K GEP L+ + A AAI +A
Sbjct: 282 FGAKGVGEPALIPMIP---AVVAAIEDA 306
>pdb|1FIQ|A Chain A, Crystal Structure Of Xanthine Oxidase From Bovine Milk
pdb|3B9J|A Chain A, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
pdb|3B9J|I Chain I, Structure Of Xanthine Oxidase With
2-Hydroxy-6-Methylpurine
Length = 219
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 130 NQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR + KL
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKL 41
>pdb|3EUB|A Chain A, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|J Chain J, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|S Chain S, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
pdb|3EUB|2 Chain 2, Crystal Structure Of Desulfo-Xanthine Oxidase With
Xanthine
Length = 165
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 130 NQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR + KL
Sbjct: 2 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKL 41
>pdb|3ETR|A Chain A, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3ETR|L Chain L, Crystal Structure Of Xanthine Oxidase In Complex With
Lumazine
pdb|3NRZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NRZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Hypoxanthine
pdb|3NS1|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NS1|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With 6- Mercaptopurine
pdb|3NVV|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVV|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Arsenite
pdb|3NVW|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVW|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Guanine
pdb|3NVY|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVY|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Quercetin
pdb|3NVZ|A Chain A, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3NVZ|J Chain J, Crystal Structure Of Bovine Xanthine Oxidase In Complex
With Indole-3- Aldehyde
pdb|3SR6|A Chain A, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
pdb|3SR6|J Chain J, Crystal Structure Of Reduced Bovine Xanthine Oxidase In
Complex With Arsenite
Length = 164
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 7/42 (16%)
Query: 60 HRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
++PEP T+ E E A GNLCRCTGYRPI ++FA
Sbjct: 129 NQPEP-------TVEEIEDAFQGNLCRCTGYRPILQGFRTFA 163
Score = 33.5 bits (75), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKL 49
T +VF VNG+K + DP TTLL +LR + KL
Sbjct: 1 TADELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKL 40
>pdb|1RM6|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1RM6|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|C Chain C, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
pdb|1SB3|F Chain F, Structure Of 4-Hydroxybenzoyl-Coa Reductase From Thauera
Aromatica
Length = 161
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 52 VLVDAEKTHRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAA 102
+++ +E R P P + E + A+AGNLCRCTGY I + ++ AA
Sbjct: 107 MIMASEALLRKNPSP-----SRDEIKAALAGNLCRCTGYVKIIKSVETAAA 152
>pdb|1N5W|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N5W|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Oxidized Form
pdb|1N60|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N60|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Cyanide- Inactivated Form
pdb|1N61|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N61|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Dithionite Reduced State
pdb|1N62|A Chain A, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N62|D Chain D, Crystal Structure Of The Mo,cu-co Dehydrogenase (codh), N-
Butylisocyanide-bound State
pdb|1N63|A Chain A, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1N63|D Chain D, Crystal Structure Of The Cu,Mo-Co Dehydrogenase (Codh);
Carbon Monoxide Reduced State
pdb|1ZXI|A Chain A, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
pdb|1ZXI|D Chain D, Reconstituted Co Dehydrogenase From Oligotropha
Carboxidovorans
Length = 166
Score = 36.2 bits (82), Expect = 0.087, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 58 KTHR---PEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFAADVD 105
++HR P P T +E I GNLCRCTGY+ I A + AA ++
Sbjct: 112 RSHRLLQENPSP-----TEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKIN 157
>pdb|1T3Q|A Chain A, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
pdb|1T3Q|D Chain D, Crystal Structure Of Quinoline 2-Oxidoreductase From
Pseudomonas Putida 86
Length = 168
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 37 FLRYHTRFKSVKLGCVLVDAEKTHRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADA 96
F R+H +L A P P + E + ++GNLCRCTGY I DA
Sbjct: 99 FRRHHALQCGFCTAGMLATARSILAENPAP-----SRDEVREVMSGNLCRCTGYETIIDA 153
>pdb|1JRO|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRO|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus
pdb|1JRP|A Chain A, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|C Chain C, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|E Chain E, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
pdb|1JRP|G Chain G, Crystal Structure Of Xanthine Dehydrogenase Inhibited By
Alloxanthine From Rhodobacter Capsulatus
Length = 462
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 80 IAGNLCRCTGYRPI 93
+AGNLCRCTGY PI
Sbjct: 129 LAGNLCRCTGYAPI 142
>pdb|2W3R|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3R|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Hypoxanthine
pdb|2W3S|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W3S|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (Desulfo Form)
From Rhodobacter Capsulatus In Complex With Xanthine
pdb|2W54|A Chain A, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|C Chain C, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|E Chain E, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W54|G Chain G, Crystal Structure Of Xanthine Dehydrogenase From
Rhodobacter Capsulatus In Complex With Bound Inhibitor
Pterin-6-Aldehyde
pdb|2W55|A Chain A, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|C Chain C, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|E Chain E, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
pdb|2W55|G Chain G, Crystal Structure Of Xanthine Dehydrogenase (E232q
Variant) From Rhodobacter Capsulatus In Complex With
Hypoxanthine
Length = 462
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 12/14 (85%), Positives = 13/14 (92%)
Query: 80 IAGNLCRCTGYRPI 93
+AGNLCRCTGY PI
Sbjct: 129 LAGNLCRCTGYAPI 142
>pdb|1FFU|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFU|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava Which Lacks The Mo-Pyranopterin Moiety Of
The Molybdenum Cofactor
pdb|1FFV|A Chain A, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
pdb|1FFV|D Chain D, Carbon Monoxide Dehydrogenase From Hydrogenophaga
Pseudoflava
Length = 163
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 52 VLVDAEKTHRPEPPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101
+L+ A + + P P T +E + GNLCRCTGY+ I A + A
Sbjct: 108 MLMRAYRFLQENPNP-----TEAEIRMGMTGNLCRCTGYQNIVKAVQYAA 152
>pdb|3HRD|D Chain D, Crystal Structure Of Nicotinate Dehydrogenase
pdb|3HRD|H Chain H, Crystal Structure Of Nicotinate Dehydrogenase
Length = 160
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 5/35 (14%)
Query: 64 PPPGFSKLTISEAEKAIAGNLCRCTGYRPIADACK 98
P P ++T+ A++GNLCRCTGY I A +
Sbjct: 120 PDPTDEEITV-----AMSGNLCRCTGYIKIHAAVR 149
>pdb|1LOS|A Chain A, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|B Chain B, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|C Chain C, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
pdb|1LOS|D Chain D, Crystal Structure Of Orotidine Monophosphate Decarboxylase
Mutant Deltar203a Complexed With 6-Azaump
Length = 224
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 223 KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILS-VEEAVG 281
+ G E E++H + F+ +IA DL V +Y + P LS + E +G
Sbjct: 115 EMGREVFLLTEMSHPGAE--MFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREIIG 172
Query: 282 RSSFFEVPSFLYPKSVGDISKGMNEADHKILSAEVKLG 319
+ SF L VGD + + AD I+ A + L
Sbjct: 173 QDSF------LISPGVGDPGETLRFADAIIVGASIYLA 204
>pdb|4AF0|A Chain A, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 603 LSDGSVVVEVGGIELGQGLWTKVKQMAAFA----LSSIQCGGMGDLLETVRVIQADTLSV 658
+ GS+ + + +G+ T V +A FA + I GG+G++ + + +V
Sbjct: 351 MGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAV 410
Query: 659 IQGGLTAGSTKS 670
+ GGL AG+T+S
Sbjct: 411 MMGGLLAGTTES 422
>pdb|4AF0|B Chain B, Crystal Structure Of Cryptococcal Inosine Monophosphate
Dehydrogenase
Length = 556
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 603 LSDGSVVVEVGGIELGQGLWTKVKQMAAFA----LSSIQCGGMGDLLETVRVIQADTLSV 658
+ GS+ + + +G+ T V +A FA + I GG+G++ + + +V
Sbjct: 351 MGSGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAV 410
Query: 659 IQGGLTAGSTKS 670
+ GGL AG+T+S
Sbjct: 411 MMGGLLAGTTES 422
>pdb|1K25|A Chain A, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|B Chain B, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|C Chain C, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
pdb|1K25|D Chain D, Pbp2x From A Highly Penicillin-Resistant Streptococcus
Pneumoniae Clinical Isolate
Length = 685
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 111 DRLCGYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVRLSREYFPVGEAIFVD 166
D G + + +D L Q N+E KV+TL SS + S EYF E D
Sbjct: 248 DTKEGITEDFVWRDILYQSNYEPGSAMKVMTLASSIDNNTFPSGEYFNSSELKIAD 303
>pdb|3FCP|A Chain A, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|B Chain B, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|C Chain C, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|D Chain D, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|E Chain E, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|F Chain F, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|G Chain G, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
pdb|3FCP|H Chain H, Crystal Structure Of Muconate Lactonizing Enzyme From
Klebsiella Pneumoniae
Length = 381
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 599 KVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSV 658
+ +IL+D +V G +L Q +T A+AL + GG +L RV QA + +
Sbjct: 244 ETAILADEAVATAYDGYQLAQQGFT-----GAYALKIAKAGGPNSVLALARVAQAAGIGL 298
Query: 659 IQGGLTAGSTKSEASCQA 676
G + G+ + AS A
Sbjct: 299 YGGTMLEGTVGTVASLHA 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,282,208
Number of Sequences: 62578
Number of extensions: 1083214
Number of successful extensions: 2356
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2107
Number of HSP's gapped (non-prelim): 96
length of query: 981
length of database: 14,973,337
effective HSP length: 108
effective length of query: 873
effective length of database: 8,214,913
effective search space: 7171619049
effective search space used: 7171619049
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)