Query 002015
Match_columns 981
No_of_seqs 426 out of 3079
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 08:46:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002015.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002015hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zyv_A AOH1; oxidoreductase, m 100.0 4E-172 1E-176 1652.5 82.6 726 145-955 580-1314(1335)
2 1vlb_A Aldehyde oxidoreductase 100.0 2E-171 6E-176 1593.1 76.9 818 12-953 2-906 (907)
3 3unc_A Xanthine dehydrogenase/ 100.0 6E-170 2E-174 1621.7 82.4 729 145-954 573-1311(1332)
4 1dgj_A Aldehyde oxidoreductase 100.0 3E-170 9E-175 1582.7 74.3 816 12-953 2-906 (907)
5 3nvz_C Xanthine dehydrogenase/ 100.0 2E-160 6E-165 1469.3 75.6 731 145-956 3-743 (755)
6 2w3s_B Xanthine dehydrogenase; 100.0 2E-157 8E-162 1447.4 74.7 727 145-953 3-771 (777)
7 1ffv_B CUTL, molybdoprotein of 100.0 4E-157 1E-161 1450.4 69.5 716 145-954 18-798 (803)
8 1t3q_B Quinoline 2-oxidoreduct 100.0 1E-156 4E-161 1445.0 69.5 722 144-954 13-784 (788)
9 1n62_B Carbon monoxide dehydro 100.0 3E-156 1E-160 1444.6 69.6 715 145-953 21-803 (809)
10 1rm6_A 4-hydroxybenzoyl-COA re 100.0 2E-155 7E-160 1430.6 73.6 717 145-954 11-764 (769)
11 3hrd_A Nicotinate dehydrogenas 100.0 4.3E-94 1.5E-98 830.8 41.9 398 145-559 8-415 (425)
12 3hrd_B Nicotinate dehydrogenas 100.0 6.3E-66 2.2E-70 576.2 32.3 303 578-954 2-327 (330)
13 3nvw_A Xanthine dehydrogenase/ 99.9 3.5E-25 1.2E-29 219.6 6.2 89 12-101 3-163 (164)
14 3hrd_D Nicotinate dehydrogenas 99.9 8E-25 2.7E-29 217.2 7.5 94 10-104 2-155 (160)
15 1ffv_A CUTS, iron-sulfur prote 99.9 2.4E-23 8.1E-28 207.9 7.2 94 10-104 2-155 (163)
16 1n62_A Carbon monoxide dehydro 99.9 5E-23 1.7E-27 206.2 7.3 94 10-104 2-156 (166)
17 1rm6_C 4-hydroxybenzoyl-COA re 99.8 1E-20 3.5E-25 189.4 6.6 93 11-104 2-154 (161)
18 2w3s_A Xanthine dehydrogenase; 99.8 4.1E-20 1.4E-24 214.7 4.4 89 12-101 1-150 (462)
19 1t3q_A Quinoline 2-oxidoreduct 99.7 7.7E-18 2.6E-22 170.1 6.4 95 9-104 7-161 (168)
20 1l5p_A Ferredoxin; [2Fe-2S] cl 91.9 0.16 5.5E-06 45.4 4.9 37 13-51 2-38 (93)
21 1rm6_A 4-hydroxybenzoyl-COA re 91.2 5.2 0.00018 49.2 19.0 187 326-516 457-746 (769)
22 1dgj_A Aldehyde oxidoreductase 90.1 5.1 0.00017 50.2 17.7 186 326-516 631-889 (907)
23 1t3q_B Quinoline 2-oxidoreduct 89.8 5.2 0.00018 49.4 17.1 184 328-514 484-761 (788)
24 1n62_B Carbon monoxide dehydro 89.2 11 0.00037 46.7 19.4 181 329-514 507-781 (809)
25 2l32_A Small archaeal modifier 86.1 0.59 2E-05 40.0 3.9 48 12-61 1-48 (74)
26 3zyv_A AOH1; oxidoreductase, m 86.1 6.6 0.00022 51.4 15.4 89 12-100 8-167 (1335)
27 1vlb_A Aldehyde oxidoreductase 85.8 4.9 0.00017 50.4 13.6 187 326-516 629-889 (907)
28 3vr8_B Iron-sulfur subunit of 85.8 0.43 1.5E-05 51.5 3.6 41 21-62 55-109 (282)
29 1iue_A Ferredoxin; electron tr 85.1 1.1 3.9E-05 40.1 5.5 38 11-51 2-39 (98)
30 3hrd_B Nicotinate dehydrogenas 84.2 2.3 8E-05 46.9 8.6 59 326-384 21-90 (330)
31 1a70_A Ferredoxin; iron-sulfur 84.0 1.4 4.7E-05 39.5 5.5 37 12-51 3-39 (97)
32 2wlb_A ETP1-FD, electron trans 84.0 0.7 2.4E-05 41.8 3.6 38 11-51 3-41 (103)
33 2wdq_B Succinate dehydrogenase 83.9 0.42 1.5E-05 50.1 2.4 42 21-63 21-76 (238)
34 3hrd_A Nicotinate dehydrogenas 82.6 1.9 6.3E-05 49.4 7.2 59 595-672 188-246 (425)
35 1jq4_A Methane monooxygenase c 78.8 1.2 4.2E-05 39.7 3.3 36 13-51 4-42 (98)
36 1awd_A Ferredoxin; electron tr 78.6 3.3 0.00011 36.6 6.0 36 13-51 2-37 (94)
37 3nvz_C Xanthine dehydrogenase/ 77.8 2.4 8.2E-05 52.1 6.4 59 326-384 444-513 (755)
38 1tyg_B YJBS; alpha beta barrel 76.0 1.9 6.5E-05 38.0 3.5 43 12-60 19-63 (87)
39 2k5p_A THis protein, thiamine- 75.5 2 7E-05 37.0 3.5 45 14-61 1-46 (78)
40 2kl0_A Putative thiamin biosyn 74.7 2.2 7.5E-05 36.2 3.5 39 15-60 2-41 (73)
41 1ffv_B CUTL, molybdoprotein of 73.0 6.1 0.00021 48.9 8.3 56 329-384 501-567 (803)
42 2w3s_B Xanthine dehydrogenase; 72.6 5 0.00017 49.5 7.4 58 327-384 465-533 (777)
43 1wri_A Ferredoxin II, ferredox 70.5 3.5 0.00012 36.4 4.0 35 13-51 3-37 (93)
44 2h88_B Succinate dehydrogenase 65.8 3.2 0.00011 43.8 3.2 41 21-62 31-85 (252)
45 2bs2_B Quinol-fumarate reducta 65.3 3.3 0.00011 43.3 3.1 41 21-62 24-77 (241)
46 1frd_A Heterocyst [2Fe-2S] fer 64.3 4.9 0.00017 35.7 3.6 37 12-51 3-41 (98)
47 1f0z_A THis protein; ubiquitin 62.8 3.1 0.00011 34.3 1.9 40 15-60 2-42 (66)
48 3lxf_A Ferredoxin; iron, iron- 62.8 5.3 0.00018 36.2 3.6 37 13-51 2-39 (104)
49 3hui_A Ferredoxin; cytochrome 60.4 6.2 0.00021 37.2 3.7 38 12-51 22-60 (126)
50 1xlq_A Putidaredoxin, PDX; [2F 59.8 5.2 0.00018 36.1 3.0 37 13-51 2-39 (106)
51 1uwm_A Ferredoxin VI, FDVI; el 58.6 6.2 0.00021 35.6 3.3 37 13-51 2-39 (106)
52 3c8y_A Iron hydrogenase 1; dit 57.9 8.3 0.00028 45.8 5.1 52 14-69 2-71 (574)
53 1czp_A Ferredoxin I; [2Fe-2S] 57.6 7.6 0.00026 34.5 3.6 37 12-51 3-41 (98)
54 1kf6_B Fumarate reductase iron 56.7 4.2 0.00014 42.6 2.0 41 21-63 24-78 (243)
55 1frr_A Ferredoxin I; electron 56.4 6.6 0.00022 34.6 3.0 35 13-51 3-38 (95)
56 3unc_A Xanthine dehydrogenase/ 56.2 10 0.00036 49.4 6.0 89 13-101 5-164 (1332)
57 1ryj_A Unknown; beta/alpha pro 53.0 6.9 0.00024 32.7 2.4 43 13-61 4-51 (70)
58 1b9r_A Protein (terpredoxin); 51.8 5 0.00017 36.2 1.4 37 13-51 2-39 (105)
59 1i7h_A Ferredoxin; 2Fe-2S,elec 44.3 10 0.00036 34.4 2.4 36 13-51 3-42 (111)
60 2cu3_A Unknown function protei 40.4 15 0.00052 29.9 2.5 38 16-60 2-40 (64)
61 2kwp_A Transcription elongatio 37.2 28 0.00095 32.8 4.1 28 799-828 45-72 (129)
62 2bt6_A Adrenodoxin 1; rutheniu 31.6 27 0.00093 31.4 3.0 30 13-44 8-38 (108)
63 2y5c_A Adrenodoxin-like protei 31.3 34 0.0012 30.8 3.6 36 13-51 7-43 (109)
64 3slz_A GAG-Pro-POL polyprotein 25.8 46 0.0016 31.5 3.5 28 2-30 13-40 (132)
65 3abf_A 4-oxalocrotonate tautom 25.5 35 0.0012 27.1 2.3 30 354-383 25-57 (64)
66 1v2y_A 3300001G02RIK protein; 23.8 36 0.0012 30.8 2.3 30 7-37 3-33 (105)
67 1n91_A ORF, hypothetical prote 21.2 74 0.0025 29.0 3.8 45 604-656 34-78 (108)
68 3i9v_3 NADH-quinone oxidoreduc 20.4 90 0.0031 38.3 5.6 25 14-41 2-26 (783)
No 1
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=100.00 E-value=3.8e-172 Score=1652.54 Aligned_cols=726 Identities=34% Similarity=0.553 Sum_probs=653.1
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCCcccCCC
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTK 223 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~~~~~~~ 223 (981)
+|++++|.|+..|+||+++|++|++.+|||||+++||||++||||++||+|+|+ +|||++|+|++|+| +.+.
T Consensus 580 IGk~v~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aharI~sID~s~A~~~pGV~aV~T~~DiP--~~~~----- 652 (1335)
T 3zyv_A 580 IGRPIMHQSGIKHATGEAVFCDDMSVLPGELFLAVVTSSKSHAKIISLDASEALASLGVVDVVTARDVP--GDNG----- 652 (1335)
T ss_dssp TTSCCCCTTHHHHHHTCCCCSTTSCCCTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEECGGGCS--SCCC-----
T ss_pred CCCCCcCcChHHHCCCcccccccCCCCCCCEEEEEEeCCCCCeEEEEEEhHHHhcCCCeEEEEehhhcC--CcCC-----
Confidence 589999999999999999999999646899999999999999999999999999 99999999999998 3331
Q ss_pred CCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCCcccCCcccccccCChhhh
Q 002015 224 FGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISKG 303 (981)
Q Consensus 224 ~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gdve~a 303 (981)
..++|+|++++|||+|||||+|||+|+++|++|+++|+||| |+|+|++.++++|++.+++.. +. ...+.||++++
T Consensus 653 ~~~~~~la~d~Vr~~Gq~VA~VvAet~~~A~~Aa~~V~VeY--e~l~P~v~~~~~a~~~~~~~~-~~--~~~~~Gd~~~a 727 (1335)
T 3zyv_A 653 REEESLYAQDEVICVGQIVCAVAADSYAHAQQAAKKVKIVY--QDIEPMIVTVQDALQYESFIG-PE--RKLEQGNVEEA 727 (1335)
T ss_dssp --CCCSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EECSCCCCSHHHHHHTTCCEE-EE--EEEEESCHHHH
T ss_pred CCCcccCCCCeEEEcCCEEEEEEECCHHHHHHHhcCCeEEE--EeCCCccCCHHHHhhcccccC-cc--ccccCCCHHHH
Confidence 35789999999999999999999999999999999999999 888667899999998776432 11 13578999999
Q ss_pred cccCCeEEEEEEEEEccccccCCCCCeeEEEEC-CCCeEEEEeCCCChHHHHHHHHHHhCCCCceEEEEeccCCCCCCCC
Q 002015 304 MNEADHKILSAEVKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGK 382 (981)
Q Consensus 304 f~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~-~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K 382 (981)
|++|+++ ||++|++++|+|++|||++|+|+|+ +||+|+||+|||+|+.+|..||++||||++||||+.+++|||||+|
T Consensus 728 f~~a~~v-ve~~y~~~~~~h~~mEp~~~~a~~~~edg~l~v~~sTQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGGFG~K 806 (1335)
T 3zyv_A 728 FQCADQI-LEGEVHLGGQEHFYMETQSVRVVPKGEDKEMDIYVSSQDAAFTQEMVARTLGIPKNRINCHVKRVGGAFGGK 806 (1335)
T ss_dssp TTSSSEE-EEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEESCCSCCTTTT
T ss_pred HhhCCeE-EEEEEEECceeccccCCcceEEEEECCCCeEEEEECCcCHHHHHHHHHHHHCCCCceEEEEeCCccCCCCcc
Confidence 9999996 9999999999999999999999998 4789999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC-chhHh
Q 002015 383 AIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAY 461 (981)
Q Consensus 383 ~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~-~~~~~ 461 (981)
......++++||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++...
T Consensus 807 ~~~~~~~~~~aAlaA~~~gRPVK~~~tR~E~~~~~~~R~~~~~~~~~g~d~dG~i~al~~~~~~d~Ga~~~~~~~~~~~~ 886 (1335)
T 3zyv_A 807 ASKPGLLASVAAVAAQKTGRPIRFILERRDDMLITGGRHPLLGKYKIGFMNNGKIKAADIQLYINGGCTPDDSELVIEYA 886 (1335)
T ss_dssp SSHHHHHHHHHHHHHHHHCSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTSCEEEEEEEEEEECCSSCTTHHHHHHHH
T ss_pred ccCchHHHHHHHHHHHHhCCCEEEEECHHHHHhhcCCCCchheEEEEEecCCCCeeeeeeeeeeccccccccccchhhhh
Confidence 86445567788999999999999999999999999999999999999999999999999999999999998776 44455
Q ss_pred hhccCCCcccccEEEEEEEeecCCCcccccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCC
Q 002015 462 MIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAG 541 (981)
Q Consensus 462 ~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g 541 (981)
..+..++|++||++++++.|+||++|.|||||||.||++|++|++||++|++|||||+|||+||++++++. ++.|
T Consensus 887 ~~~~~g~Y~ipn~~~~~~~v~TN~~~~~a~RG~G~pq~~fa~E~~mD~lA~~lg~DP~elR~~N~~~~~~~-----~~~g 961 (1335)
T 3zyv_A 887 LLKLENAYKIPNLRVRGRVCKTNLPSNTAFRGFGFPQGAFVTETCMSAVAAKCRLPPEKVRELNMYRTIDR-----TIHN 961 (1335)
T ss_dssp HHHTTTTBCCSEEEEEEEEECCSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHBCCSSCB-----CTTS
T ss_pred hhhccCcceeeEEEEEEEEEeccCCCCCcccCCCchhheeEecchhhHHHHHhCCCHHHHHHHhccCCCcc-----ccCC
Confidence 56678999999999999999999999999999999999999999999999999999999999999998753 4567
Q ss_pred CcccC-CHHHHHHHHHHhcCChhhHHHHHHhhhcCCcceeecccccEEeecCCC-----CceEEEEEeeCCcEEEEeccc
Q 002015 542 ELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVEVGGI 615 (981)
Q Consensus 542 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~grGig~a~~~~~~~~~-----~~~a~v~l~~DG~v~v~~g~~ 615 (981)
+.+++ .+.+||+++++.++|.+++++...++..++|++||+++++..++.+.. .+.+.|+|++||+|+|.+|++
T Consensus 962 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~rGi~~~~~~~~~g~~~~~~~~~~a~v~i~~DGsv~v~~G~~ 1041 (1335)
T 3zyv_A 962 QEFDPTNLLQCWEACVENSSYYNRKKAVDEFNQQRFWKKRGIAIIPMKFSVGFPKTFYYQAAALVQIYTDGSVLVAHGGV 1041 (1335)
T ss_dssp CBC--CCHHHHHHHHHHHTTHHHHHHHHHHHHHHCSSSEEEEEEEEEEEECCCSSGGGGCEEEEEEECTTSCEEECBSCC
T ss_pred cccccccHHHHHHHHHHhhhHHHHHHhhhhhhccCcceeeeeEEEEEEeeccCCcccccceeEEEEEeCCCcEEEEECCc
Confidence 77766 999999999999999999999889999999999999999888877653 478999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002015 616 ELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERL 695 (981)
Q Consensus 616 d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~ 695 (981)
|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++|++||++++++.
T Consensus 1042 e~GQG~~T~~aQiaAe~LGi--------p~e~I~v~~~DT~~~P~~~gt~gSr~t~~~G~Av~~Aa~~l~~rl~~~a~~~ 1113 (1335)
T 3zyv_A 1042 ELGQGINTKMIQVASRELKI--------PMSYIHLDEMSTVTVPNTVTTGASTGADVNGRAVQNACQILMKRLEPIIKQN 1113 (1335)
T ss_dssp CSSSCHHHHHHHHHHHHHTS--------CGGGEEECCEETTTSCSCCCSCTTCHHHHHHHHHHHHHHHHHHHTTTHHHHS
T ss_pred CCCCchhHHHHHHHHHHhCC--------CHHHEEEecCCcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999998876
Q ss_pred hhccCCCCHHHHHHHHhhccceeeEeEEecCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhh
Q 002015 696 QAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLI 775 (981)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (981)
+ ..+|++++..++...+.|.+.++|....... .+...
T Consensus 1114 ~----~~~~~~~~~~~~~~~v~l~a~~~~~~~~~~~---~~~~g------------------------------------ 1150 (1335)
T 3zyv_A 1114 P----SGTWEEWVKEAFVQSISLSATGYFRGYQADM---DWEKG------------------------------------ 1150 (1335)
T ss_dssp T----TSCHHHHHHHHHHTTCCCEEEEEECCCCCEE---ETTTT------------------------------------
T ss_pred C----CCCHHHHHHHhhhcccceeEEEEeccCcCCc---CcccC------------------------------------
Confidence 4 3689999998888899998888876532110 00000
Q ss_pred hccccccccccccccccccceeeeEEEEEccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCCC
Q 002015 776 YHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSD 855 (981)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~a~~aeVEVD~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~ 855 (981)
.....+.|+|+||++|||||++||+|+|+|+++++|||++|||++++||||||++||||+||+||+.||++
T Consensus 1151 ---------~g~~~~~~~~ga~~aEVeVD~~TG~v~V~r~~~v~D~G~vINP~~~~gQieGG~vqGiG~AL~Ee~~~d~~ 1221 (1335)
T 3zyv_A 1151 ---------EGDIFPYFVFGAACSEVEIDCLTGAHKNIRTDIVMDGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPE 1221 (1335)
T ss_dssp ---------EEECCSCEEEEEEEEEEEECTTTCCEEEEEEEEEECCSSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCTT
T ss_pred ---------cCCcCccCcceEEEEEEEEECCCCcEEEEEEEEEEecCcccCHHHHHHHHHHHHHHHHHHHHhCCCEECCC
Confidence 00012468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCCCCceEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCc
Q 002015 856 GLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDL 935 (981)
Q Consensus 856 G~~l~~~~~dY~iP~~~DiP~~i~v~~~e~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~ 935 (981)
|+++|.||+||+||++.|+|++++++++++.++|.+|||+||+||+|+++++++++||+|||++|+++. |..+
T Consensus 1222 G~~~t~~~~dY~iP~~~DiP~~~~v~~~~~~~~p~~p~GaKGvGE~g~~~~~~v~~AI~nAv~~A~~~~-------g~~g 1294 (1335)
T 3zyv_A 1222 GVLYTRGPHQYKIASVTDIPEEFHVSLLTPTPNPKAIYSSKGLGEAGTFLGCSVFFAIAAAVAAAREER-------GLSP 1294 (1335)
T ss_dssp CCBCCCSTTTSCCCCTTTSCSEEEEEECCCCCCTTSGGGCCCCTTGGGGGGHHHHHHHHHHHHHHHHHC-----------
T ss_pred CcCCCCChhhCcCcChhhCCCceEEEEecCCCCCCCCCCCeEeecccccccchHHHHHHHHHHHHHHhc-------CCCC
Confidence 999999999999999999997688888865558999999999999999988889999999999999764 4445
Q ss_pred ccccCCCCCHHHHHHhcCCC
Q 002015 936 TFDLEVPATVQVVKELCGPD 955 (981)
Q Consensus 936 ~~~~~lP~Tpe~v~~al~~~ 955 (981)
++++++|+||||||+||+.+
T Consensus 1295 ~~~~~~P~TperV~~A~~d~ 1314 (1335)
T 3zyv_A 1295 IWAINSPATAEVIRMACEDQ 1314 (1335)
T ss_dssp -CCCCSSCCHHHHHHHSCCT
T ss_pred CcccCCCCCHHHHHHHhhhh
Confidence 77899999999999999764
No 2
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=100.00 E-value=1.9e-171 Score=1593.12 Aligned_cols=818 Identities=23% Similarity=0.286 Sum_probs=703.4
Q ss_pred eEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------EeeecccccCC--------------------
Q 002015 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP-------------------- 62 (981)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~dg~~~~~~-------------------- 62 (981)
+.|+|+|||+.+++ +++|+++|||+||++++|||+|.|| |+|||+++++|
T Consensus 2 ~~~~~~~ng~~~~~-~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~~~~~~~g~~i~Tiegl~ 80 (907)
T 1vlb_A 2 IQKVITVNGIEQNL-FVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVG 80 (907)
T ss_dssp EEEEEEETTEEEEE-EECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHHC
T ss_pred ceEEEEECCEEEEE-ecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEECCeEeechHhHHHHHcCCCcEEEECCCC
Confidence 36999999999999 7999999999999999999999999 99999987643
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHhh--CCcccCCCCHHHHHHHHHHhhcccccc
Q 002015 63 ---------------------EPPPGFS-----------KLTISEAEKAIA--GNLCRCTGYRPIADACKSFAADVDIED 108 (981)
Q Consensus 63 ---------------------~~~pG~~-----------~p~~~~i~~~l~--gnlCRCtgY~~i~~A~~~~~~~~~~~~ 108 (981)
.|||||+ +||++||+++|+ |||||||||.+|++|++.+++....+.
T Consensus 81 ~~~~~~~~q~a~~~~~~~qCG~c~pg~~~~~~~ll~~~~~p~~~~i~~~~~~~gn~cRctgY~~i~~a~~~aa~~~~~~~ 160 (907)
T 1vlb_A 81 QPENLHPLQKAWVLHGGAQCGFCSPGFIVSAKGLLDTNADPSREDVRDWFQKHRNACRCTGYKPLVDAVMDAAAVINGKK 160 (907)
T ss_dssp BTTBCCHHHHHHHHHTCCSSCTTHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCcCcCHHHHHHHHcCCCCCCcChHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhhccCC
Confidence 1566662 689999999999 999999999999999998765421100
Q ss_pred ccccccCCCCchhhhhhhcccccccccccccccccCccccccccCccccccceeeeeecC---CCCCCeEEEEEccCCCC
Q 002015 109 LGDRLCGYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVRLSREYFPVGEAIFVDDI---PSPINCLYGAFVYSTKP 185 (981)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~tG~a~Y~~Di---~~~pgmL~a~vvrSp~a 185 (981)
.++ .. .|..+.. -...|++++|.|+.+|+||+++|++|+ . +|||||++++|||++
T Consensus 161 ~~~-------------~~------~~k~p~~--~~~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~-~~gmL~a~~vrSp~a 218 (907)
T 1vlb_A 161 PET-------------DL------EFKMPAD--GRIWGSKYPRPTAVAKVTGTLDYGADLGLKM-PAGTLHLAMVQAKVS 218 (907)
T ss_dssp CGG-------------GG------SCCCCSS--CCCTTSCCCCTTHHHHHTTCSCCHHHHHHTS-CTTCEEEEEEECSSS
T ss_pred ccc-------------cc------cccCccc--cccCCCcCccccchhhcCCceeeecccCcCC-CCCCeEEEEEecCCC
Confidence 000 00 0000000 123699999999999999999999999 6 789999999999999
Q ss_pred CeEEEeEecCCCC-CCCEEEEEEccCCCcCCCCcccC------CCCCCccccCCCceeecCCcEEEEEeCCHHHHHHhcc
Q 002015 186 LVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSR------TKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAAD 258 (981)
Q Consensus 186 ~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~~~~~------~~~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~ 258 (981)
||||++||+|+|+ +|||++|+|++|+|......+.. ....++|+|++++|||+|||||+|||+|+|+|++|++
T Consensus 219 harI~sID~s~A~~~pGV~~V~t~~D~p~~~~~~g~~~~~~~~~~~~~~~~la~~~Vr~~Gq~VA~VvA~t~~~A~~Aa~ 298 (907)
T 1vlb_A 219 HANIKGIDTSEALTMPGVHSVITHKDVKGKNRITGLITFPTNKGDGWDRPILCDEKVFQYGDCIALVCADSEANARAAAE 298 (907)
T ss_dssp SEEEEEEECHHHHTSTTEEEEECGGGCCSCSEECCSSCCTTCSSCSCCEESSCSSEECSTTCEEEEEEESSHHHHHHHHT
T ss_pred CeEEEEechhHHhcCCCeEEEEEcccCcccccccCccccccccccCCCchhccCCeEEEcCCeEEEEEECCHHHHHHHhc
Confidence 9999999999999 99999999999998321111110 0134789999999999999999999999999999999
Q ss_pred cceEEEccCCCCCCCCCHHHHhcCCCC--cccCCccc---ccccCChhhhc-ccCCeEEEEEEEEEccccccCCCCCeeE
Q 002015 259 LAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY---PKSVGDISKGM-NEADHKILSAEVKLGSQYYFYMETQTAL 332 (981)
Q Consensus 259 lI~Vey~~e~l~p~v~d~~~Al~~~a~--~~~~~~~~---~~~~Gdve~af-~~A~~vvve~~y~~~~~~h~~mEp~~av 332 (981)
+|+||| |+| |+++|+++|++++++ |+..+|+. ...+||++++| ++|+++ ||++|++++++|++|||++|+
T Consensus 299 ~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~n~~~~~~~~~Gd~~~af~a~A~~v-ve~~y~~~~~~h~~mEp~~~~ 374 (907)
T 1vlb_A 299 KVKVDL--EEL-PAYMSGPAAAAEDAIEIHPGTPNVYFEQPIVKGEDTGPIFASADVT-VEGDFYVGRQPHMPIEPDVAF 374 (907)
T ss_dssp TCEEEE--EEC-CCCCSHHHHHSTTCCCSSTTSCSEEEEEEEEESSCHHHHHHHCSEE-EEEEEEECCCCCCCSSCCEEE
T ss_pred ceEEEE--EcC-CCCCCHHHHHhhcCccccccccccccccccccCChhhhhcccCCeE-EEEEEEECCccccCCCCCeEE
Confidence 999999 889 999999999998875 33113542 35789999999 999986 999999999999999999999
Q ss_pred EEECCCCeEEEEeCCCChHHHHHHHHHHhCCCCceEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCcEEEEcCHHH
Q 002015 333 AVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKT 412 (981)
Q Consensus 333 A~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E 412 (981)
|+|++||+|+||+|||+|+.+|..||++||||++||||+++++|||||+|... +. ++.+|++|+++||||||+|||+|
T Consensus 375 A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K~~~-~~-~~~aA~~A~~~grPVkl~~tR~e 452 (907)
T 1vlb_A 375 AYMGDDGKCYIHSKSIGVHLHLYMIAPGVGLEPDQLVLVANPMGGTFGYKFSP-TS-EALVAVAAMATGRPVHLRYNYQQ 452 (907)
T ss_dssp EEECTTSCEEEEESCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTGGGSC-SS-HHHHHHHHHHHSSCEEEECCHHH
T ss_pred EEEcCCCcEEEEECCcChHHHHHHHHHHhCCChhhEEEEeCcCCCCCCCCccc-cH-HHHHHHHHHHhCCCEEEEechHH
Confidence 99997679999999999999999999999999999999999999999999864 33 67889999999999999999999
Q ss_pred HHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC-chhHhhhccCCCcccccEEEEEEEeecCCCccccc
Q 002015 413 DMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAM 491 (981)
Q Consensus 413 ~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~-~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~ 491 (981)
+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++.....+..++|+|||++++++.|+||++|+|||
T Consensus 453 ~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~ 532 (907)
T 1vlb_A 453 QQQYTGKRSPWEMNVKFAAKKDGTLLAMESDWLVDHGPYSEFGDLLTLRGAQFIGAGYNIPNIRGLGRTVATNHVWGSAF 532 (907)
T ss_dssp HHHSSCBCCCEEEEEEEEECTTCCEEEEEEEEEEECTTCCTTHHHHHHHHHHHTTTTBCCCEEEEEEEEECCSSCCBCCC
T ss_pred HhhccCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcccccchHHHHHHHhccCCCcCCCcEEEEEEEEcCCCCCCccc
Confidence 99999999999999999999999999999999999999987765 33344456779999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCCCcccC-CHHHHHHHHHHhcCChhhHHHHHH
Q 002015 492 RAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKE 570 (981)
Q Consensus 492 RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 570 (981)
||||.||++|++|++||++|++|||||+|||+||++++++. ++.|+.+++ ++.+||++++++ |.+++++.+.
T Consensus 533 Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~~~~-----~~~g~~~~~~~~~~~l~~~~~~--w~~r~~~~~~ 605 (907)
T 1vlb_A 533 RGYGAPQSMFASECLMDMLAEKLGMDPLELRYKNAYRPGDT-----NPTGQEPEVFSLPDMIDQLRPK--YQAALEKAQK 605 (907)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCC-----CTTSCCCSCCCHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCc-----CCCCccccCccHHHHHHHHHHH--HHHhhhhhhh
Confidence 99999999999999999999999999999999999988753 455766655 899999999999 9877665544
Q ss_pred hhhcCCcceeecccccEEeecCCC---CceEEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHh---cccccCCCCCC
Q 002015 571 FNRSNLWRKKGISRVPIVYDVPLM---STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFAL---SSIQCGGMGDL 644 (981)
Q Consensus 571 ~~~~~~~~grGig~a~~~~~~~~~---~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~L---gi~~~~~~~~~ 644 (981)
| ..++| +||+|+++..++.++. .+++.|+|++||+|+|.+|++|||||++|+++|||||+| || |
T Consensus 606 ~-~~g~~-~rGiGiA~~~~~~g~~~~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L~~~Gi--------p 675 (907)
T 1vlb_A 606 E-STATH-KKGVGISIGVYGSGLDGPDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGV--------A 675 (907)
T ss_dssp H-CCSSE-EEEEEEEEEEEESSSTTTCEEEEEEEECTTSCEEEECCCCCSSSCHHHHHHHHHHHHHGGGTC--------C
T ss_pred c-cCCCc-eeEEEEEEEEeccccCCCCCccEEEEEeCCCeEEEEECCccCCCCHHHHHHHHHHHHHhhcCC--------C
Confidence 4 34555 5788887788887743 488999999999999999999999999999999999999 99 9
Q ss_pred CCcEEEEcCCCCcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHhhccceeeEeEEe
Q 002015 645 LETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQMGSVKWETLIQQAYLQSVSLSASSLY 724 (981)
Q Consensus 645 ~e~V~v~~~DT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 724 (981)
+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||+++|+++ ++|++++..++ .+.....|
T Consensus 676 ~~~V~v~~~DT~~~p~~~~t~gSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~------l~~~el~~~~~----~~~~~~~~ 745 (907)
T 1vlb_A 676 PEKIKFTWPNTATTPNSGPSGGSRQQVMTGNAIRVACENLLKACEKPGGGY------YTYDELKAADK----PTKITGNW 745 (907)
T ss_dssp GGGEEECCCBTTTSCCCCCSCTTCHHHHHHHHHHHHHHHHHHHHBCTTSSB------CCHHHHHHTTC----CCEEEEEE
T ss_pred HHHEEEecCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhcc------CCHHHHHhhcc----ccccccee
Confidence 999999999999999999999999999999999999999999999888754 48999986432 12222222
Q ss_pred cCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccceeeeEEEEE
Q 002015 725 LPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEIN 804 (981)
Q Consensus 725 ~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVEVD 804 (981)
...... .+.. + ..... ....|+|+||++|||||
T Consensus 746 ~~~~~~----~~~~---~-------------------------------------~~~~~---p~~~~~~ga~~aEVeVD 778 (907)
T 1vlb_A 746 TASGAT----HCDA---V-------------------------------------TGLGK---PFVVYMYGVFMAEVTVD 778 (907)
T ss_dssp ECTTCB----CCCT---T-------------------------------------TCCSB---CCSCEEEEEEEEEEEEE
T ss_pred cCCCcc----cccc---c-------------------------------------cCCCC---CCCCcceEEEEEEEEEE
Confidence 210000 0000 0 00000 02468999999999999
Q ss_pred ccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCCCCccccCCCCCCCCCCCCCCCCceEEEEec
Q 002015 805 LLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILN 884 (981)
Q Consensus 805 ~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~G~~l~~~~~dY~iP~~~DiP~~i~v~~~e 884 (981)
++||+++|+|+++++|||++|||++++||||||++||||+||+||+. |+++|.||+||++|++.|+|++|+++++|
T Consensus 779 ~~TG~v~V~r~~~v~D~G~viNP~~~~gQieGG~~qGlG~aL~Ee~~----G~~~~~~~~dY~ip~~~D~P~~i~v~~ve 854 (907)
T 1vlb_A 779 VATGQTTVDGMTLMADLGSLCNQLATDGQIYGGLAQGIGLALSEDFE----DIKKHATLVGAGFPFIKQIPDKLDIVYVN 854 (907)
T ss_dssp TTTCCEEEEEEEEEEECSSCSCHHHHHHHHHHHHHHHHHHHHTCCCC----STTTSSSTTTTTCCCGGGSCSCEEEEECC
T ss_pred CCCCcEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CeeCCCChhhCcCCChHhCCCcEEEEEec
Confidence 99999999999999999999999999999999999999999999998 99999999999999999999659999999
Q ss_pred CCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002015 885 SGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 953 (981)
Q Consensus 885 ~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~ 953 (981)
++ ++.+|||+||+||+++++ +++||+|||++|+| +++++||+|||+||++|+
T Consensus 855 ~~-~~~~p~GaKGvGE~~~~~---~~~AIaNAv~~A~G-------------~r~~~lP~tpe~v~~al~ 906 (907)
T 1vlb_A 855 HP-RPDGPFGASGVGELPLTS---PHAAIINAIKSATG-------------VRIYRLPAYPEKVLEALK 906 (907)
T ss_dssp CC-CTTSGGGCCCCTTGGGSS---HHHHHHHHHHHHHS-------------CCCCBSCCCHHHHHHHHH
T ss_pred CC-CCCCCCcCccccccccch---HHHHHHHHHHHhhC-------------CccccCCCCHHHHHHHhh
Confidence 86 678999999999999997 78899999999996 678899999999999874
No 3
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=100.00 E-value=6.3e-170 Score=1621.67 Aligned_cols=729 Identities=36% Similarity=0.597 Sum_probs=655.6
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCC-cccCC
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQN-IGSRT 222 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~-~~~~~ 222 (981)
.|++++|.|+..|+||+++|++|++.+|||||++++|||++||||++||+|+|+ +|||++|+|++|+| +.| ++
T Consensus 573 iG~~v~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~sID~s~A~~~pGV~~V~t~~Dip--~~~~~g--- 647 (1332)
T 3unc_A 573 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIP--GSNETG--- 647 (1332)
T ss_dssp TTSCCCCTTHHHHHHTCSCCGGGSCCBTTCEEEEEEECSSSSEEEEEEECTTGGGSTTEEEEECGGGCS--SCSEES---
T ss_pred CCCCCcCcchHHhcccccccccccCCCCCcEEEEEEeCCCCCeeEeeechHHHhcCCCEEEEEeccccC--CcccCC---
Confidence 488889999999999999999999645899999999999999999999999999 99999999999998 433 22
Q ss_pred CCCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCCcccCCcccccccCChhh
Q 002015 223 KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISK 302 (981)
Q Consensus 223 ~~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gdve~ 302 (981)
...++|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|++++++.. +. .....||+++
T Consensus 648 ~~~d~~~la~~~Vry~GqpVa~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~A~~~~~~~~-~~--~~~~~Gd~~~ 721 (1332)
T 3unc_A 648 LFNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTY--EDL-PAIITIEDAIKNNSFYG-SE--LKIEKGDLKK 721 (1332)
T ss_dssp TTSCEESSCCSEECSTTCEEEEEEESSHHHHHHHHHTCEEEE--EEC-CCCCSHHHHHHTTCEEE-EE--EEEEESCHHH
T ss_pred CCCCcccccCceEEEcCCeEEEEEECCHHHHHHHhhcCceEE--EcC-CCcCCHHHHhhccCccC-Cc--cccccCCHhH
Confidence 235899999999999999999999999999999999999999 889 99999999999876532 11 1357899999
Q ss_pred hcccCCeEEEEEEEEEccccccCCCCCeeEEEEC-CCCeEEEEeCCCChHHHHHHHHHHhCCCCceEEEEeccCCCCCCC
Q 002015 303 GMNEADHKILSAEVKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGG 381 (981)
Q Consensus 303 af~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~-~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~ 381 (981)
+|++|+++ ||++|++++|+|+||||++|+|+|+ ++|+|+||+|||+|+.+|..||++||||++||||+++++|||||+
T Consensus 722 afa~A~~v-ve~~y~~~~~~H~~mEp~~~~A~~~~~~g~l~v~~sTQ~p~~~r~~vA~~Lglp~~kVrV~~~~vGGgFG~ 800 (1332)
T 3unc_A 722 GFSEADNV-VSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGG 800 (1332)
T ss_dssp HHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTT
T ss_pred HhhcCCeE-eeeeEEeCCccccCCCCceEEEEEeCCCCeEEEEECCCCHHHHHHHHHHHhCCCchhEEEEeCCCCCCCCC
Confidence 99999996 9999999999999999999999998 678999999999999999999999999999999999999999999
Q ss_pred CCcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC-chhH
Q 002015 382 KAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPA 460 (981)
Q Consensus 382 K~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~-~~~~ 460 (981)
|......++++||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++..
T Consensus 801 K~~~~~~~~~~aAlaA~~~gRPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~v~~~ 880 (1332)
T 3unc_A 801 KETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMER 880 (1332)
T ss_dssp TSSTTHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTSCEEEEEEEEEEEEESSCTTHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHhCCCEEEEecHHHHHhhcCCCCceeEEEEEEECCCCcEEEEEEEEEEcCCcCccccHHHHHH
Confidence 986444567889999999999999999999999999999999999999999999999999999999999988764 4445
Q ss_pred hhhccCCCcccccEEEEEEEeecCCCcccccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCC
Q 002015 461 YMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSA 540 (981)
Q Consensus 461 ~~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~ 540 (981)
.+.++.++|+|||++++++.|+||+|++|||||||.||++|++|++||++|++|||||+|||+||++++++. +++
T Consensus 881 ~~~~~~~~Y~ipn~~~~~~~v~TN~~~~~a~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~g~~-----t~~ 955 (1332)
T 3unc_A 881 ALFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDL-----THF 955 (1332)
T ss_dssp HHHTTTTTBCCSSEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCB-----CTT
T ss_pred HHHhcCCCccCCcEEEEEEEEeCCCCCCCcccCCCcHHHHHHHHHHHHHHHHHHCcCHHHHHHHhcCCCCCc-----CCC
Confidence 556778999999999999999999999999999999999999999999999999999999999999998743 456
Q ss_pred CCcccC-CHHHHHHHHHHhcCChhhHHHHHHhhhcCCcceeecccccEEeecCCC-----CceEEEEEeeCCcEEEEecc
Q 002015 541 GELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVEVGG 614 (981)
Q Consensus 541 g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~grGig~a~~~~~~~~~-----~~~a~v~l~~DG~v~v~~g~ 614 (981)
|+.+++ .+++||++++++++|++|+++.+.||.+++|++||||+++..++++.. +++|.|+|++||+|+|.+|+
T Consensus 956 g~~~~~~~l~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGig~~~~~~g~g~~~~~~~~~~a~v~l~~DGsv~v~~g~ 1035 (1332)
T 3unc_A 956 NQRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGG 1035 (1332)
T ss_dssp CCBCCSCCHHHHHHHHHHHTTHHHHHHHHHHHHHHCSSEEEEEEEEEEEEEESCSSGGGCEEEEEEEECTTSCEEEEESC
T ss_pred CcccCCCCHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcceeeEEEEEEEeeeeccCCCCCcceEEEEEcCCCeEEEEECC
Confidence 888776 899999999999999999988888888889999999999888887753 47899999999999999999
Q ss_pred cccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002015 615 IELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRER 694 (981)
Q Consensus 615 ~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~ 694 (981)
+|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++|++||++++++
T Consensus 1036 ~e~GQG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~P~~~~t~aSr~t~~~G~Av~~A~~~l~~rl~~~aa~ 1107 (1332)
T 3unc_A 1036 TEMGQGLHTKMVQVASKALKI--------PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKK 1107 (1332)
T ss_dssp CCSSSCHHHHHHHHHHHHHTS--------CGGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhCC--------CHHHEEEEcCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999 999999999999999999999999999999999999999999999999886
Q ss_pred HhhccCCCCHHHHHHHHhhccceeeEeEEecCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhh
Q 002015 695 LQAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNL 774 (981)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 774 (981)
. ...+|++++..++...+.|.+.++|.+.... +.+..
T Consensus 1108 ~----~~~~~~~~~~~a~~~~~~l~~~~~~~~~~~~---~~~~~------------------------------------ 1144 (1332)
T 3unc_A 1108 N----PDGSWEDWVMAAYQDRVSLSTTGFYRTPNLG---YSFET------------------------------------ 1144 (1332)
T ss_dssp C----TTSCHHHHHHHHHHTTCCCEEEEEEECCSCC---CBTTT------------------------------------
T ss_pred C----CCCCHHHHHHHhhccCCceEEEEEEecCCcc---ccccc------------------------------------
Confidence 4 3468999988888778888888888653211 01000
Q ss_pred hhccccccccccccccccccceeeeEEEEEccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCC
Q 002015 775 IYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNS 854 (981)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~a~~aeVEVD~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~ 854 (981)
........|+||||++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||+
T Consensus 1145 ---------~~g~~~~~~~~Ga~~aEVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~GQieGG~~qGiG~aL~Ee~~~d~ 1215 (1332)
T 3unc_A 1145 ---------NSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSP 1215 (1332)
T ss_dssp ---------TBSCSCSEEEEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCT
T ss_pred ---------CCCCCCcccceEEEEEEEEEECCCCcEEEEEEEEEEeCCccCCHHHHHHHHHhhHHHHHHHHHhCcceECC
Confidence 00001246899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCCceEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCC
Q 002015 855 DGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSD 934 (981)
Q Consensus 855 ~G~~l~~~~~dY~iP~~~DiP~~i~v~~~e~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~ 934 (981)
+|+++|.||+||+||++.|+|++|++.+++..++|.+|||+||+||++++++++|++||.|||++|+.+++ ..|..
T Consensus 1216 ~G~l~t~~~~dY~iP~~~DiP~~~~v~~~~~~~~p~~p~GaKGvGE~~~~~~~av~~AI~nAv~~A~~~~~----~~g~~ 1291 (1332)
T 3unc_A 1216 EGSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAARAQHT----NNNTK 1291 (1332)
T ss_dssp TSCBCCCSTTTSCCCCGGGSCSEEEEEECSSCCCTTSGGGBCCCSSTTGGGGHHHHHHHHHHHHHHHHHHT----CCCTT
T ss_pred CCCCCCCCHHHcCCcchhhcCCcEEEEEecCCCCCCCCCCccccCCcccccchHHHHHHHHHHHHHhhhcc----cccCC
Confidence 99999999999999999999966999999733478899999999999999988899999999999983210 01222
Q ss_pred cccccCCCCCHHHHHHhcCC
Q 002015 935 LTFDLEVPATVQVVKELCGP 954 (981)
Q Consensus 935 ~~~~~~lP~Tpe~v~~al~~ 954 (981)
+++++++|+||||||++|+.
T Consensus 1292 g~~~~~~P~Tpe~v~~a~~~ 1311 (1332)
T 3unc_A 1292 ELFRLDSPATPEKIRNACVD 1311 (1332)
T ss_dssp CCCCCCBSCCHHHHHHHSCC
T ss_pred CceecCCCCCHHHHHHHHhh
Confidence 36789999999999999986
No 4
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=100.00 E-value=2.7e-170 Score=1582.74 Aligned_cols=816 Identities=22% Similarity=0.282 Sum_probs=699.5
Q ss_pred eEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------EeeecccccCC--------------------
Q 002015 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP-------------------- 62 (981)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~dg~~~~~~-------------------- 62 (981)
+.|+|+|||+.+++ +++|+++|||+||++++|||+|.|| |+|||+++++|
T Consensus 2 ~~~~~~~ng~~~~~-~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl~ 80 (907)
T 1dgj_A 2 ETKTLIVNGMARRL-LVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIG 80 (907)
T ss_dssp EEEECEETTBCCEE-EECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGTC
T ss_pred ceEEEEECCEEEEE-ecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCCC
Confidence 36999999999999 7999999999999999999999999 99999987643
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHhh--CCcccCCCCHHHHHHHHHHhhcccccc
Q 002015 63 ---------------------EPPPGFS-----------KLTISEAEKAIA--GNLCRCTGYRPIADACKSFAADVDIED 108 (981)
Q Consensus 63 ---------------------~~~pG~~-----------~p~~~~i~~~l~--gnlCRCtgY~~i~~A~~~~~~~~~~~~ 108 (981)
.|||||+ +||++||+++|+ |||||||||.+|++|++.+++....+.
T Consensus 81 ~~~~~~~~q~a~~~~~~~qCG~c~pg~~~~~~~ll~~~~~p~~~~i~~~~~~~gnlcRctgY~~i~~a~~~aa~~~~~~~ 160 (907)
T 1dgj_A 81 APDCLHPLQHAWIQHGAAQCGFCTPGFIVSAKALLDENVAPSREDVRDWFQKHHNICRCTGYKPLVDAVMDAAAILRGEK 160 (907)
T ss_dssp BTTBCCHHHHHHHHHTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCcccCHHHHHHHHcCCCCCCcChhHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHhhccCC
Confidence 1566662 689999999999 999999999999999997765421100
Q ss_pred ccccccCCCCchhhhhhhcccccccccccccccccCccccccccCccccccceeeeeec--C-CCCCCeEEEEEccCCCC
Q 002015 109 LGDRLCGYSNSVLLKDSLMQQNHEQFDKSKVLTLLSSAEQVVRLSREYFPVGEAIFVDD--I-PSPINCLYGAFVYSTKP 185 (981)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~tG~a~Y~~D--i-~~~pgmL~a~vvrSp~a 185 (981)
+ .+... |..+.. -...|++++|.|+.+|+||+++|++| + . +|||||++++|||++
T Consensus 161 ----------~---~~~~~------~k~p~~--~~~iG~~~~R~d~~~kvtG~a~Y~~D~~~~~-~~gmL~a~~vrSp~a 218 (907)
T 1dgj_A 161 ----------T---VEEIS------FKMPAD--GRIWGSSIPRPSAVAKVTGLAEFGADAALRM-PENTLHLALAQAKVS 218 (907)
T ss_dssp ----------C---HHHHS------CCCCTT--CCCTTSCCCCTTHHHHHHTCCCBHHHHGGGS-CTTCEEEEEEECSSS
T ss_pred ----------C---hhhhc------ccCccc--ccccCCCCCCcchhhhcCCceEeecCcCccC-CCCCeEEEEEecCCC
Confidence 0 00000 000000 12369999999999999999999999 8 6 789999999999999
Q ss_pred CeEEEeEecCCCC-CCCEEEEEEccCCCcCCCCcccC------CCCCCccccCCCceeecCCcEEEEEeCCHHHHHHhcc
Q 002015 186 LVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSR------TKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAAD 258 (981)
Q Consensus 186 ~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~~~~~------~~~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~ 258 (981)
||||++||+|+|+ +|||++|+|++|+|......+.. ....++|+|++++|||+|||||+|||+|+++|++|++
T Consensus 219 harI~sID~s~A~~~PGV~~V~t~~D~p~~~~~~g~~~~~~~~~~~~~~~~la~~~Vry~Gq~VA~VvAet~~~A~~Aa~ 298 (907)
T 1dgj_A 219 HALIKGIDTSEAEKMPGVYKVLTHKDVKGKNRITGLITFPTNKGDGWERPILNDSKIFQYGDALAIVCADSEANARAAAE 298 (907)
T ss_dssp SEEEEEEECHHHHHSTTEEEEECGGGCCSCSEECCSSCCTTCSSCSCCEESSCSSEECSTTCEEEEEEESSHHHHHHHHT
T ss_pred CEEEEeCChHHHhcCCCcEEEEEcccCCccccccCccccccccccCCCcccccCCeEEEcCCeEEEEEECCHHHHHHHhc
Confidence 9999999999999 99999999999998321111110 0134789999999999999999999999999999999
Q ss_pred cceEEEccCCCCCCCCCHHHHhcCCCC--cccCCccc---ccccCChhhhc--ccCCeEEEEEEEEEccccccCCCCCee
Q 002015 259 LAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY---PKSVGDISKGM--NEADHKILSAEVKLGSQYYFYMETQTA 331 (981)
Q Consensus 259 lI~Vey~~e~l~p~v~d~~~Al~~~a~--~~~~~~~~---~~~~Gdve~af--~~A~~vvve~~y~~~~~~h~~mEp~~a 331 (981)
+|+||| |+| |+++|+++|++++++ |+..+|+. ...+||++++| ++|+++ ||++|++++++|++|||++|
T Consensus 299 ~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~n~~~~~~~~~Gd~~~af~~a~A~~v-ve~~y~~~~~~h~~mEp~~~ 374 (907)
T 1dgj_A 299 KVKFDL--ELL-PEYMSAPEAMAPDAIEIHPGTPNVYYDQLEEKGEDTVPFFNDPANVV-AEGSYYTQRQPHLPIEPDVG 374 (907)
T ss_dssp TCEEEE--EEC-CCCCSHHHHHSTTCCCSBTTBCSEEEEEEEEESSCSHHHHSCTTSEE-EEEEEEECCCCCCCSSCCEE
T ss_pred ccEEEE--EcC-CCCCCHHHHHhhcCcccccccccccceeccccCChhhhhcccCCCEE-EEEEEEECCccccCCCCCeE
Confidence 999999 889 999999999998875 33113542 34789999999 999986 99999999999999999999
Q ss_pred EEEECCCCeEEEEeCCCChHHHHHHHHHHhCCC-CceEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCcEEEEcCH
Q 002015 332 LAVPDEDNCLVVYSSIQCPEYAHATIARCLGIP-EHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNR 410 (981)
Q Consensus 332 vA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp-~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVkl~~sR 410 (981)
+|+|++||+|+||+|||+|+.+|..||++|||| ++||||+++++|||||+|... +. ++.+|++|+++||||||+|||
T Consensus 375 ~A~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~~VrV~~~~vGGgFG~K~~~-~~-~~~aA~~A~~~grPVkl~~tR 452 (907)
T 1dgj_A 375 YGYINEQGQVVIHSKSVAIHLHALMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSP-TM-EALVGVAVMATGRPCHLRYNY 452 (907)
T ss_dssp EEEECTTSCEEEEECCSCHHHHHHHHHHHHTCCTTTTEEEEECBCSCCTTGGGSC-SS-HHHHHHHHHHHCSCEEEECCH
T ss_pred EEEEcCCCcEEEEECCcCHHHHHHHHHHHhCCCCCccEEEEeCCCCCCCCCCccc-cH-HHHHHHHHHHhCCCEEEEeeh
Confidence 999997689999999999999999999999999 999999999999999999864 33 678899999999999999999
Q ss_pred HHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC-chhHhhhccCCCcccccEEEEEEEeecCCCccc
Q 002015 411 KTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRT 489 (981)
Q Consensus 411 ~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~-~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~g 489 (981)
+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++.....+..++|+|||++++++.|+||++|+|
T Consensus 453 ~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Gay~~~~~~v~~~~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~g 532 (907)
T 1dgj_A 453 EQQQNYTGKRSPFWTTMRYAADRQGKILAMETDWSVDHGPYSEFGDLLTLRGAQYIGAGYGIANIRGTGRTVATNHCWGA 532 (907)
T ss_dssp HHHHHSSCBCCCEEEEEEEEECTTSCEEEEEEEEEEECCSCCTTHHHHHHHHHHHTTTTBCCSEEEEEEEEECCSSCCBC
T ss_pred HHHhhhcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcccccchHHHHHHHHhcCCCcCCCcEEEEEEEEcCCCCCCc
Confidence 9999999999999999999999999999999999999999987765 333444567799999999999999999999999
Q ss_pred ccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCCCcccC-CHHHHHHHHHHhcCChhhHHHH
Q 002015 490 AMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVI 568 (981)
Q Consensus 490 a~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~ 568 (981)
||||||.||++|++|++||++|++|||||+|||+||++++++. ++.|+.+++ ++.+||++++++ |.+++++.
T Consensus 533 a~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~~~~-----~~~g~~~~s~~~~~~l~~~~~~--w~~r~~~~ 605 (907)
T 1dgj_A 533 AFRGYGAPESEFPSEVLMDELAEKLGMDPFELRALNCYREGDT-----TSSGQIPEVMSLPEMFDKMRPY--YEESKKRV 605 (907)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCC-----CTTSCCCSCCCHHHHHHHHHHH--HHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCc-----CCCCccccCccHHHHHHHHHHH--HHhhhhhh
Confidence 9999999999999999999999999999999999999988753 455766665 899999999999 98766554
Q ss_pred HHhhhcCCcceeecccccEEeecCCC---CceEEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHh---cccccCCCC
Q 002015 569 KEFNRSNLWRKKGISRVPIVYDVPLM---STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFAL---SSIQCGGMG 642 (981)
Q Consensus 569 ~~~~~~~~~~grGig~a~~~~~~~~~---~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~L---gi~~~~~~~ 642 (981)
+.| ..++| +||+|+++..+++++. .+++.|+|++||+|+|.+|++|||||++|+++|||||+| ||
T Consensus 606 ~~~-~~g~~-~rG~Gia~~~~~~g~~~~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L~~~Gi------- 676 (907)
T 1dgj_A 606 KER-STAEI-KRGVGVALGVYGAGLDGPDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGI------- 676 (907)
T ss_dssp HTT-CCSSE-EEEEEEEEEEEEESSSSSCEEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHTGGGTC-------
T ss_pred hcc-cCCCe-eEEEEEEEEEecccCCCCCCccEEEEEeCCCeEEEEECCcCCCccHHHHHHHHHHHHHhhcCC-------
Confidence 433 34555 5777777777777643 488999999999999999999999999999999999999 99
Q ss_pred CCCCcEEEEcCCCCcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHhhccceeeEeE
Q 002015 643 DLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQMGSVKWETLIQQAYLQSVSLSASS 722 (981)
Q Consensus 643 ~~~e~V~v~~~DT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 722 (981)
|+|+|+|..+||+.+|++++|+|||+|+++|+||++||++|++||+++|++++ +|+++. . .. .+ +....
T Consensus 677 -p~~~V~v~~~DT~~~p~~~~t~gSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l------~~~~l~-~-~g-~~-~~~~~ 745 (907)
T 1dgj_A 677 -TPENIHLVMNDTSKTPNSGPAGGSRSQVVTGNAIRVACEMLIEGMRKPGGGFF------TPAEMK-A-EG-RP-MRYDG 745 (907)
T ss_dssp -CGGGEEEEESBTTTSCCCCCSCTTCTTTHHHHHHHHHHHHHHHHTBCSSSSBC------CHHHHH-H-TT-CC-CEEEE
T ss_pred -CHHHEEEecCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CHHHHh-h-CC-eE-EEecc
Confidence 99999999999999999999999999999999999999999999998887553 677776 2 11 11 11111
Q ss_pred EecCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccceeeeEEE
Q 002015 723 LYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVE 802 (981)
Q Consensus 723 ~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVE 802 (981)
.|..... . +++ . ........|+|+||++|||
T Consensus 746 ~~~~~~~-----~------------------------------------------~~~-~-~~~~~~~~~~~ga~~aEVe 776 (907)
T 1dgj_A 746 KWTAPAK-----D------------------------------------------CDA-K-GQGSPFACYMYGLFLTEVA 776 (907)
T ss_dssp EEECSCB-----C------------------------------------------CCT-T-SCSBCCSEEEEEEEEEEEE
T ss_pred eeeccCC-----C------------------------------------------cCC-C-CCCCCCCCCceEEEEEEEE
Confidence 1211000 0 000 0 0000013689999999999
Q ss_pred EEccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCCCCccccCCCCCCCCCCCCCCCCceEEEE
Q 002015 803 INLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEI 882 (981)
Q Consensus 803 VD~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~G~~l~~~~~dY~iP~~~DiP~~i~v~~ 882 (981)
||++||+++|+|+++++|||++|||++++||||||++||||+||+||+. |+++|.||+||++|++.|+|++|++++
T Consensus 777 VD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~----G~~~~~~~~dY~ip~~~D~P~~i~v~~ 852 (907)
T 1dgj_A 777 VEVATGKATVEKMVCVADIGKICNKLVVDGQIYGGLAQGVGLALSEDYE----DLKKHSTMGGAGIPSIKMIPDDIEIVY 852 (907)
T ss_dssp EETTTTEEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCC----STTTTSSTTTTTCCCGGGSCSCEEEEE
T ss_pred EECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHHHHhc----CeeCCCChhhCcCCChHHCCCcEEEEE
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999996599999
Q ss_pred ecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002015 883 LNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 953 (981)
Q Consensus 883 ~e~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~ 953 (981)
+|++ ++.+|||+||+||+++++ +++||+|||++|+| ++++++|+|||+||++|+
T Consensus 853 ~e~~-~~~~p~GaKGvGE~~~~~---~~~AIaNAv~~A~G-------------~r~~~lP~tpe~v~~al~ 906 (907)
T 1dgj_A 853 VETP-RKDGPFGASGVGEMPLTA---PHAAIINGIYNACG-------------ARVRHLPARPEKVLEAMP 906 (907)
T ss_dssp CCCC-CTTSGGGBCCCTTGGGSS---HHHHHHHHHHHHHS-------------CCCCBSCCCHHHHHHTCC
T ss_pred ecCC-CCCCCCCCcccCccccch---HHHHHHHHHHHhhC-------------CccccCCCCHHHHHHHhh
Confidence 9986 678999999999999997 78899999999996 578899999999999985
No 5
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=100.00 E-value=1.9e-160 Score=1469.25 Aligned_cols=731 Identities=35% Similarity=0.591 Sum_probs=653.6
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCCcccCCC
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTK 223 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~~~~~~~ 223 (981)
.|++++|.|+.+|+||+++|++|++.+|||||++++|||++||||++||+|+|+ +|||++|+|++|+| +.|... .
T Consensus 3 iG~~~~R~d~~~kvtG~a~Y~~Di~~~pgmL~a~~vrSp~aha~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~~g--~ 78 (755)
T 3nvz_C 3 VGRPLPHLAAAMQASGEAVYCDDIPRYENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIP--GSNETG--L 78 (755)
T ss_dssp TTSCCCCTTHHHHHHTCSCCGGGSCCBTTCEEEEEEECSSSSEEEEEEECTTGGGSTTEEEEECGGGCS--SCSEES--T
T ss_pred CCCCCcCcchHHhcccccccccccCCCCCcEEEEEEECCCCCeEEEEeehHHHhcCCCeEEEEEcCCCC--ccccCC--C
Confidence 589999999999999999999999635899999999999999999999999999 99999999999998 433211 2
Q ss_pred CCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCCcccCCcccccccCChhhh
Q 002015 224 FGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISKG 303 (981)
Q Consensus 224 ~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gdve~a 303 (981)
..++|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|++++++.. +. .....||++++
T Consensus 79 ~~~~~~la~~~Vry~Gq~Va~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~a~~~~~~~~-~~--~~~~~Gd~~~a 152 (755)
T 3nvz_C 79 FNDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTY--EDL-PAIITIEDAIKNNSFYG-SE--LKIEKGDLKKG 152 (755)
T ss_dssp TSCEESSCCSEECSTTCEEEEEEESSHHHHHHHHHTCEEEE--EEC-CCCCSHHHHHHTTCEEE-EE--EEEEESCHHHH
T ss_pred CCCcccccCCeEEEcCCeEEEEEECCHHHHHHHhcccceEE--EcC-CCCCCHHHHhhccCccC-CC--cccccCCHhHH
Confidence 35789999999999999999999999999999999999999 889 99999999998876432 11 13578999999
Q ss_pred cccCCeEEEEEEEEEccccccCCCCCeeEEEEC-CCCeEEEEeCCCChHHHHHHHHHHhCCCCceEEEEeccCCCCCCCC
Q 002015 304 MNEADHKILSAEVKLGSQYYFYMETQTALAVPD-EDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGK 382 (981)
Q Consensus 304 f~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~-~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K 382 (981)
|++|+++ ||++|++++++|++|||++|+|+|+ ++|+|+||+|||+|+.+|..||++||||++||||+++++|||||+|
T Consensus 153 ~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~VrV~~~~vGGgFG~K 231 (755)
T 3nvz_C 153 FSEADNV-VSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGK 231 (755)
T ss_dssp HHHCSEE-EEEEEEECCBCCCCSSCCEEEEEECSSTTCEEEEECCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTTT
T ss_pred hhcCCeE-EEEEEEeCCccccCCCCceEEEEEeCCCCeEEEEECCCCHHHHHHHHHHHHCCCCccEEEEECCCCCCCCCc
Confidence 9999996 9999999999999999999999998 6779999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC-chhHh
Q 002015 383 AIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAY 461 (981)
Q Consensus 383 ~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~-~~~~~ 461 (981)
......++++||++|+++||||||+|||+|+|+.+++||++.+++|+|+|+||+|+||+++++.|+|+|.+++. ++...
T Consensus 232 ~~~~~~~~~~aa~aA~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~~~~~~ 311 (755)
T 3nvz_C 232 ETRSTLVSVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERA 311 (755)
T ss_dssp SSTTHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCBCCEEEEEEEEECTTCCEEEEEEEEEEEEESSCTTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhCCCEEEEecHHHHHhhcCCCCceEEEEEEEECCCCcEEEEEEEEEEccCcCcCccHHHHHHH
Confidence 86433467889999999999999999999999999999999999999999999999999999999999987654 34445
Q ss_pred hhccCCCcccccEEEEEEEeecCCCcccccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccccCCCC
Q 002015 462 MIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFYESSAG 541 (981)
Q Consensus 462 ~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~~~~~g 541 (981)
..+..++|+|||++++++.|+||++|+|||||||.||++|++|++||+||++|||||+|||+||++++++. +++|
T Consensus 312 ~~~~~~~Y~ipn~~~~~~~v~Tn~~~~~a~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N~~~~~~~-----~~~g 386 (755)
T 3nvz_C 312 LFHMDNCYKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDL-----THFN 386 (755)
T ss_dssp HHTTTTTBCCSSEEEEEEEEECSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHBCCTTCB-----CTTC
T ss_pred HHhcCCCccCCcEEEEEEEEeCCCCCCCcccCCChHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCCCc-----CCCC
Confidence 56678999999999999999999999999999999999999999999999999999999999999998743 4568
Q ss_pred CcccC-CHHHHHHHHHHhcCChhhHHHHHHhhhcCCcceeecccccEEeecCCC-----CceEEEEEeeCCcEEEEeccc
Q 002015 542 ELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STPGKVSILSDGSVVVEVGGI 615 (981)
Q Consensus 542 ~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~grGig~a~~~~~~~~~-----~~~a~v~l~~DG~v~v~~g~~ 615 (981)
+.+++ .+++||++++++++|++|+++.+.++.+++|++||+|+++..++++.. ++++.|+|++||+|+|.+|++
T Consensus 387 ~~~~s~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGig~~~~~~g~g~~~~~~~~~~a~v~l~~DG~v~v~~g~~ 466 (755)
T 3nvz_C 387 QRLEGFSVPRCWDECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGT 466 (755)
T ss_dssp CBCTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHCSSEEEEEEEEEEEEEESCSSGGGCEEEEEEEECTTSCEEEEESCC
T ss_pred ccccCCCHHHHHHHHHHhcCHHHHHHHHHhhhccCCccceeEEEEEEEecccccCCCCCcceEEEEEecCCeEEEEECCC
Confidence 88776 999999999999999999888888888888999999999888887753 478999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002015 616 ELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERL 695 (981)
Q Consensus 616 d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~ 695 (981)
|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||+||++++++.
T Consensus 467 e~GQG~~T~~aQiaAe~Lgi--------~~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~ 538 (755)
T 3nvz_C 467 EMGQGLHTKMVQVASKALKI--------PISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKN 538 (755)
T ss_dssp CSSSCHHHHHHHHHHHHHTS--------CGGGEECCCEETTTSCSCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCC--------CHHHEEEECCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999 9999999999999999999999999999999999999999999999998854
Q ss_pred hhccCCCCHHHHHHHHhhccceeeEeEEecCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhh
Q 002015 696 QAQMGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLI 775 (981)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 775 (981)
...+|++++..++...+.|...++|.+.... +.+..
T Consensus 539 ----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~------------------------------------- 574 (755)
T 3nvz_C 539 ----PDGSWEDWVMAAYQDRVSLSTTGFYRTPNLG---YSFET------------------------------------- 574 (755)
T ss_dssp ----TTSCHHHHHHHHHHTTCCCEEEEEEECSSCC---CBTTT-------------------------------------
T ss_pred ----CCCCHHHHHHHhhccccceEEEEEEecCCcc---ccccc-------------------------------------
Confidence 3468999888777777788887777653211 00000
Q ss_pred hccccccccccccccccccceeeeEEEEEccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCCC
Q 002015 776 YHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSD 855 (981)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~a~~aeVEVD~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~ 855 (981)
........|+|+||++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||++
T Consensus 575 --------~~g~~~~~~~~ga~~aeVeVD~~TG~v~v~r~~~v~D~G~~iNP~~~~GQi~GG~~qGiG~aL~Ee~~~d~~ 646 (755)
T 3nvz_C 575 --------NSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQGLGLFTLEELHYSPE 646 (755)
T ss_dssp --------TBSCSCSEEEEEEEEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCTT
T ss_pred --------CCCCCccccceEEEEEEEEEECCCCCEEEEEEEEEEeCCccCCHHHHHHHHHhhHHHHHHHHhhCceEECCC
Confidence 000112468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCCCCCCceEEEEec-CCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCC
Q 002015 856 GLVVSEGTWTYKIPTLDTIPKQFNVEILN-SGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSD 934 (981)
Q Consensus 856 G~~l~~~~~dY~iP~~~DiP~~i~v~~~e-~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~ 934 (981)
|+++|.||+||+||++.|+|++|++.+++ ++ +|.+|||+||+||+++++++++++||.|||++|+.+.+ ..|..
T Consensus 647 G~~~t~~~~dY~iP~~~DiP~~~~v~~~~~~~-~p~~p~GaKGvGE~~~~~~~av~~Ai~~Av~~A~~~~~----~~g~~ 721 (755)
T 3nvz_C 647 GSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCP-NKKAIYASKAVGEPPLFLGASVFFAIKDAIRAARAQHT----NNNTK 721 (755)
T ss_dssp SCBCCCSTTTSCCCCGGGSCSEEEEEECSSCC-CTTSGGGBCCCSSTTGGGGHHHHHHHHHHHHHHHHHHT----CSCTT
T ss_pred CCCCCCCHHhccCCchhhCCCcEEEEEEeCCC-CCCCCCCCcccCcccccchHHHHHHHHHHHHHHhhhcc----ccccC
Confidence 99999999999999999999658999997 54 78899999999999999988899999999999982110 01222
Q ss_pred cccccCCCCCHHHHHHhcCCCc
Q 002015 935 LTFDLEVPATVQVVKELCGPDS 956 (981)
Q Consensus 935 ~~~~~~lP~Tpe~v~~al~~~~ 956 (981)
+++++++|+||||||++|+..-
T Consensus 722 g~~~~~~P~Tpe~v~~a~~~~~ 743 (755)
T 3nvz_C 722 ELFRLDSPATPEKIRNACVDKF 743 (755)
T ss_dssp CCCCCCBSCCHHHHHHHSCSTT
T ss_pred CceecCCCCCHHHHHHHHhHHH
Confidence 2678999999999999998744
No 6
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=100.00 E-value=2.4e-157 Score=1447.44 Aligned_cols=727 Identities=33% Similarity=0.476 Sum_probs=645.9
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCC-cccCC
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQN-IGSRT 222 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~-~~~~~ 222 (981)
.|++++|.|+..|+||+++|++|++.+|||||++++|||++||||++||+|+|+ +|||++|+|++|+|. .+ .+.
T Consensus 3 iG~~~~R~d~~~kvtG~a~Y~~D~~~~~gmL~a~~vrSp~a~a~I~siD~s~A~~~pGV~~V~t~~d~p~--~~~~g~-- 78 (777)
T 2w3s_B 3 VGKPLPHDSARAHVTGQARYLDDLPCPANTLHLAFGLSTEASAAITGLDLEPVRESPGVIAVFTAADLPH--DNDASP-- 78 (777)
T ss_dssp TTSCCCCTTHHHHHHTCCCCGGGSCCCTTCEEEEEEECSCSSEEEEEEECHHHHTSTTEEEEEEGGGCSS--CCCCCS--
T ss_pred CCCCCCCcchHHhccccceeccccCCCCCCEEEEEEECCCCCeEEEEeEhHHHhcCCCcEEEEEcccCCC--cccCCC--
Confidence 588999999999999999999999437899999999999999999999999999 999999999999983 22 221
Q ss_pred CCCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCCcccCCcccccccCChhh
Q 002015 223 KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSFFEVPSFLYPKSVGDISK 302 (981)
Q Consensus 223 ~~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~~~~~~~~~~~~~Gdve~ 302 (981)
...++|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|+++++...... .....||+++
T Consensus 79 ~~~~~~~la~~~Vry~GqpVa~VvA~t~~~A~~Aa~~v~V~y--e~l-p~v~~~~~a~~~~~~~~~~~--~~~~~Gd~~~ 153 (777)
T 2w3s_B 79 APSPEPVLATGEVHFVGQPIFLVAATSHRAARIAARKARITY--APR-PAILTLDQALAADSRFEGGP--VIWARGDVET 153 (777)
T ss_dssp SSSCCCSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHHHTCBSSSSC--EEEEESCHHH
T ss_pred CCCCcccccCceEEecCCeEEEEEECCHHHHHHHhcceEEEE--EcC-CCCCCHHHHhhccCccccCc--cccccCChhH
Confidence 245889999999999999999999999999999999999999 889 99999999998754321111 1347899999
Q ss_pred hcccCCeEEEEEEEEEccccccCCCCCeeEEEECCCCeEEEEeCCCChHHHHHHHHHHhCCCCceEEEEeccCCCCCCCC
Q 002015 303 GMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGGGFGGK 382 (981)
Q Consensus 303 af~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGGgFG~K 382 (981)
+|++|+++ ||++|++++++|++|||++|+|+|++|| |+||+|||+|+.+|..||++||||++||||+++++|||||+|
T Consensus 154 a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~-l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGGgFG~K 231 (777)
T 2w3s_B 154 ALAGAAHL-AEGCFEIGGQEHFYLEGQAALALPAEGG-VVIHCSSQHPSEIQHKVAHALGLAFHDVRVEMRRMGGGFGGK 231 (777)
T ss_dssp HHHTCSEE-EEEEEEECCCCCCCSSCCEEEEEEETTE-EEEEESCSCHHHHHHHHHHHHTCCGGGEEEEECCCSCCTTTT
T ss_pred HhhcCCeE-EEEEEEECCccccCCcCCeEEEEEECCc-cEEEECCcCHHHHHHHHHHHHCCCHHHEEEEeCCCCCCCCcC
Confidence 99999996 9999999999999999999999999766 999999999999999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC-chhHh
Q 002015 383 AIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP-NIPAY 461 (981)
Q Consensus 383 ~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~-~~~~~ 461 (981)
....+++++.+|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|+|.+++. ++...
T Consensus 232 ~~~~~~~~~~aA~~A~~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Ga~~~~~~~v~~~~ 311 (777)
T 2w3s_B 232 ESQGNHLAIACAVAARATGRPCKMRYDRDDDMVITGKRHDFRIRYRIGADASGKLLGADFVHLARCGWSADLSLPVCDRA 311 (777)
T ss_dssp TTTTHHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCCCCCEEEEEEEEECTTSCEEEEEEEEEEECCSSCTTHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCCCceEEEEEEEECCCCCEEEEEEEEEEcCCcccccchhHHHHH
Confidence 86555678899999999999999999999999999999999999999999999999999999999999987665 33445
Q ss_pred hhccCCCcccccEEEEEEEeecCCCcccccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCC------------
Q 002015 462 MIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTH------------ 529 (981)
Q Consensus 462 ~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~------------ 529 (981)
..+..++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||+||++++
T Consensus 312 ~~~~~~~Y~ipn~~~~~~~v~Tn~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N~~~~~~~~~~~~~~~~ 391 (777)
T 2w3s_B 312 MLHADGSYFVPALRIESHRLRTNTQSNTAFRGFGGPQGALGMERAIEHLARGMGRDPAELRALNFYDPPERGGLSAPPSP 391 (777)
T ss_dssp HHTTTTTBCCSSEEEEEEEECCSSCCCCCCTTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHTTBCCCC-----------
T ss_pred HHhcCCccccCCEEEEEEEEeCCCCCCCccCCCChHHHHHHHHHHHHHHHHHhCcCHHHHHHHhccCccccccccccccc
Confidence 55678999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ------CCccccccCCCCCcccC-CHHHHHHHHHHhcCChhhHHHHHHhhhcCCcceeecccccEEeecCCC-----Cce
Q 002015 530 ------NSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM-----STP 597 (981)
Q Consensus 530 ------~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~grGig~a~~~~~~~~~-----~~~ 597 (981)
++ |+.++.|+.+++ ++.+||+++++.++|++++++.+.+|..++|++||||+++..++.++. .++
T Consensus 392 ~~~~~~~~---p~~~~~g~~~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~~rGiG~a~~~~g~~~~~~~~~~~~ 468 (777)
T 2w3s_B 392 PEPIATKK---TQTTHYGQEVADCVLGELVTRLQKSANFTTRRAEIAAWNSTNRTLARGIALSPVKFGISFTLTHLNQAG 468 (777)
T ss_dssp ------CC---CCBCTTCCBCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHTCSSEEEEEEEEEEEEECSCSSGGGCEEE
T ss_pred ccccCCCC---CccCCCCccccCCCHHHHHHHHHHhcCHHHHHHHHHHhhcCCCCeeEEEEEEEeeEccccccccCCCCc
Confidence 52 355777888766 899999999999999998888888888787778999999888888742 378
Q ss_pred EEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCCCCccchhhhhHHHHH
Q 002015 598 GKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAV 677 (981)
Q Consensus 598 a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~gt~aSr~t~~~g~Av 677 (981)
+.|+|++||+|+|.+|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||
T Consensus 469 a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av 540 (777)
T 2w3s_B 469 ALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGI--------DPVQVRITATDTSKVPNTSATAASSGADMNGMAV 540 (777)
T ss_dssp EEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTS--------CGGGEEECCEETTTSCSCCCSCTTCHHHHHHHHH
T ss_pred eEEEEccCCeEEEEECCccCCCChhHHHHHHHHHHHCC--------CHHHEEEEcCCCCCCCCCCCCccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc---------------CCCCHHHHHHHHhhccceeeEeEEecCCCCccccccceeEEEe
Q 002015 678 RNCCKILVERLTPLRERLQAQM---------------GSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSE 742 (981)
Q Consensus 678 ~~Aa~~l~~~l~~~aa~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~e 742 (981)
++||++||+||+++|+++++.. ..++|++++..++...+.|....+|..+.. .+.. +
T Consensus 541 ~~Aa~~l~~~l~~~aa~~~~~~~~~l~~~~g~v~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~-----~~~~---~ 612 (777)
T 2w3s_B 541 KDACETLRGRLAGFVAAREGCAARDVIFDAGQVQASGKSWRFAEIVAAAYMARISLSATGFYATPKL-----SWDR---L 612 (777)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGCEEETTEEEETTEEEEHHHHHHHHHHTTCCCEEEEEEECSSC-----EEET---T
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHEEEECCEEEECCCcccHHHHHHHhhhcCcceEEEEEEeCCCc-----cccc---c
Confidence 9999999999999999987531 147899999887776777777776654210 0000 0
Q ss_pred eeccccccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccceeeeEEEEEccCCcEEEEEEEEEeccC
Q 002015 743 VSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCG 822 (981)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVEVD~~TG~v~V~r~~~v~D~G 822 (981)
.. .......|+|+||++|||||++||+++|+|+++++|||
T Consensus 613 ---------------------------------------~~-~g~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G 652 (777)
T 2w3s_B 613 ---------------------------------------RG-QGRPFLYFAYGAAITEVVIDRLTGENRILRTDILHDAG 652 (777)
T ss_dssp ---------------------------------------TT-EEECCSCEEEEEEEEEEEEETTTCCEEEEEEEEEEECB
T ss_pred ---------------------------------------cc-CCCCcccceeeeEEEEEEEecCCCEEEEEEEEEEEECC
Confidence 00 00012368999999999999999999999999999999
Q ss_pred cccChhhhhhhhhhhHHhhHhHHhcccceeCCCCccccCCCCCCCCCCCCCCCCceEEEEecCCCCCCCCCCccccCCCC
Q 002015 823 QSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPP 902 (981)
Q Consensus 823 ~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~G~~l~~~~~dY~iP~~~DiP~~i~v~~~e~~~~~~gp~GaKGvGE~~ 902 (981)
++|||++++||||||++||||+||+||+.||++|+++|.||+||+||++.|+|++|++.++|+++++.+|||+||+||++
T Consensus 653 ~~iNP~~~~GQi~GG~~qGiG~aL~Ee~~~d~~G~~~t~~~~~Y~iP~~~DvP~~~~v~~~e~~~~~~~p~gaKGvGE~~ 732 (777)
T 2w3s_B 653 ASLNPALDIGQIEGAYVQGAGWLTTEELVWDHCGRLMTHAPSTYKIPAFSDRPRIFNVALWDQPNREETIFRSKAVGEPP 732 (777)
T ss_dssp SCSCHHHHHHHHHHHHHHHHHHTTTCCCCBCTTSCBSCCSTTTSCCCCGGGSCSEEEEEEECCCCSSCCGGGBCCCSSGG
T ss_pred ccCCHHHHHHHHHhhHHhhhchhheeeeEECCCCCCCCCChHhccCcchhhCCCceEEEEEcCCCCCCCCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999559999999766778999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002015 903 LLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 953 (981)
Q Consensus 903 ~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~ 953 (981)
+++++++++||.|||.+|++ .++++++|+|||+||++|+
T Consensus 733 ~~~~~a~~~Ai~~Ai~~a~g------------~~~~~~~P~Tpe~v~~al~ 771 (777)
T 2w3s_B 733 FLLGISAFLALHDACAACGP------------HWPDLQAPATPEAVLAAVR 771 (777)
T ss_dssp GGGGHHHHHHHHHHHTTSCS------------SCCCCCSSCCHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcC------------CceecCCCCCHHHHHHHHh
Confidence 99865556666666655543 1467899999999999985
No 7
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=100.00 E-value=3.5e-157 Score=1450.38 Aligned_cols=716 Identities=22% Similarity=0.264 Sum_probs=632.5
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCCcccC--
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSR-- 221 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~~~~~-- 221 (981)
.|++++|.|+.+|+||+++|++|+. +|||||++++|||++||||++||+|+|+ +|||++|+|++|+|. .+.+..
T Consensus 18 iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aharI~sID~s~A~~~PGV~~V~t~~D~p~--~~~~~~~~ 94 (803)
T 1ffv_B 18 MGASRLRKEDARFIQGKGNYVDDIK-MPGMLHMDIVRAPIAHGRIKKIHKDAALAMPGVHAVLTAEDLKP--LKLHWMPT 94 (803)
T ss_dssp TTCCCCCSSHHHHTTTCCCCGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEECHHHHGG--GTCSEEEC
T ss_pred CCCCCcCcChHhhcccceecccccC-CCCCEEEEEEeCCCCCeEEEEeehHHHhcCCCeEEEEehhhccC--cccccccc
Confidence 6999999999999999999999996 7899999999999999999999999999 999999999999983 222111
Q ss_pred CCCCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCC--ccc-CC--------
Q 002015 222 TKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEV-PS-------- 290 (981)
Q Consensus 222 ~~~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~--~~~-~~-------- 290 (981)
....++|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|++++++ |+. ++
T Consensus 95 ~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~~~~~~~~~~ 171 (803)
T 1ffv_B 95 LAGDVAAVLADEKVHFQMQEVAIVIADDRYIAADAVEAVKVEY--DEL-PVVIDPIDALKPDAPVLREDLAGKTSGAHGP 171 (803)
T ss_dssp TTSCEEESSCCSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCHHHHTSTTCCCSCGGGTTCCEETTEE
T ss_pred cCCCccccccCceEEEcCCcEEEEEECCHHHHHHHhcCCEEEE--eeC-CccCCHHHHhhcCCceecccccccccccccc
Confidence 0113568999999999999999999999999999999999999 889 999999999998873 431 12
Q ss_pred ----ccc---cccc-CChhhhcccCCeEEEEEEEEEccccccCCCCCeeEEEECC-CCeEEEEeCCCChHHHHHHHHHHh
Q 002015 291 ----FLY---PKSV-GDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCL 361 (981)
Q Consensus 291 ----~~~---~~~~-Gdve~af~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~L 361 (981)
|+. ...+ ||++++|++|+++ ||++|++++++|++|||++|+|+|++ +|+|+||+|||+|+.+|..||++|
T Consensus 172 ~~~~n~~~~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA~~L 250 (803)
T 1ffv_B 172 REHHNHIFTWGAGDKAATDAVFANAPVT-VSQHMYYPRVHPCPLETCGCVASFDPIKGDLTTYITSQAPHVVRTVVSMLS 250 (803)
T ss_dssp CSSTTEEEEEEEECHHHHHHHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHH
T ss_pred cccccccccccccccCChhhhhccCCEE-EEEEEEECCEeccCCCCceEEEEEeCCCceEEEEECCCCHHHHHHHHHHHh
Confidence 542 2467 9999999999996 99999999999999999999999985 689999999999999999999999
Q ss_pred CCCCceEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEE
Q 002015 362 GIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQ 441 (981)
Q Consensus 362 glp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~ 441 (981)
|||++||||+++++|||||+|.. .++.++++|++|+++||||||+|||+|+|+.+++||++.+++|+|+|+||+|+|++
T Consensus 251 glp~~~VrV~~~~vGGgFG~K~~-~~~~~~~aa~~A~~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~ 329 (803)
T 1ffv_B 251 GIPESKVRIVSPDIGGGFGNKVG-IYPGYVCAIVASIVLGRPVKWVEDRVENISTTAFARDYHMDGELAATPDGKILGLR 329 (803)
T ss_dssp CCCGGGEEEECCCCSCCTTTTSS-CCHHHHHHHHHHHHHTSCEEEECCHHHHHHHSCEECCEEEEEEEEECTTCCEEEEE
T ss_pred CCCHHHEEEEeCCCCCCCCcccc-ccHHHHHHHHHHHHhCCCEEEEechHHHhhhcCCCCCeEEEEEEEECCCCCEEEEE
Confidence 99999999999999999999986 35556789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCC-CCCchhH-hhhc-cCCCcccccEEEEEEEeecCCCccc-ccCCCCh-hHHHHHHHHHHHHHHHHcCC
Q 002015 442 LNILIDAGQYPD-VSPNIPA-YMIG-ALKKYDWGALHFDIKVCRTNLPSRT-AMRAPGE-VQGSFIAEAVIEHVASTLSM 516 (981)
Q Consensus 442 ~~~~~d~Gay~~-~~~~~~~-~~~~-~~g~Y~ipn~~~~~~~v~TN~~p~g-a~RG~G~-pq~~fa~E~~mD~lA~~lG~ 516 (981)
++++.|+|+|.. +++.+.. ...+ ..++|+|||++++++.|+||++|+| +|||||. ||++|++|++||++|++|||
T Consensus 330 ~~~~~d~Gay~~~~~~~v~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~p~g~a~Rg~G~~~q~~fa~E~~mDelA~~lG~ 409 (803)
T 1ffv_B 330 VNVVADHGAFDACADPTKFPAGLFHICSGSYDIPRAHCSVKGVYTNKAPGGVAYXXSFRVTEAVYLIERMVDVLAQKLNM 409 (803)
T ss_dssp EEEEEECCSSCCCCCCTTCTTTTGGGTTTTBCCSEEEEEEEEECCSSCCEESCSSCTTTHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEecCCcccccccchhHHHHHHhhcCCCccCCcEEEEEEEEEcCCCCCccceeccCCCchhHHHHHHHHHHHHHHHCc
Confidence 999999999965 6663322 2333 4789999999999999999999999 9999999 99999999999999999999
Q ss_pred CHHHHHHhhcCCCCCccccccCCCCCcccC-CHHHHHHHHHHhcCChhhHHHHHHhhhcCC-cceeecccccEEeecCCC
Q 002015 517 EVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNL-WRKKGISRVPIVYDVPLM 594 (981)
Q Consensus 517 DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~grGig~a~~~~~~~~~ 594 (981)
||+|||+||++++++ +||.+++|+.+++ ++.+||++++++++|.+++++..++++.++ |++||+|++++.++.+..
T Consensus 410 DP~e~R~~N~~~~~~--~p~~~~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~g~~~~~rGiG~a~~~~~~g~~ 487 (803)
T 1ffv_B 410 DKAEIRAKNFIRKEQ--FPYTTQFGFEYDSGDYHTALKKVLDAVDYPALRAEQAARRADPNSPTLMGIGLVTFTEVVGAG 487 (803)
T ss_dssp CTTHHHHHHBCCGGG--CSEECTTSCEECCCCHHHHHHHHHHHHTHHHHHHHHHHHHHCTTCSEEEEEEEEEEECCBCCC
T ss_pred CHHHHHHHhCCCCCc--CccccCCCcccCCccHHHHHHHHHHHCCchhHHHHhHhhhccCCCcceEEEEEEEEEEecccc
Confidence 999999999998764 4677888888876 899999999999999987777677777777 467899998888877643
Q ss_pred ------------CceEEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCC
Q 002015 595 ------------STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGG 662 (981)
Q Consensus 595 ------------~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~ 662 (981)
.+++.|+|++||+|+|.+|++|||||++|+++||+||+||| |+|+|+|..+||+.+|+++
T Consensus 488 ~~~~~~~~~~~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------~~e~V~v~~~DT~~~p~~~ 559 (803)
T 1ffv_B 488 PSKMCDILGVGMFDSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGI--------PSEVIQVEEGDTSTAPYGL 559 (803)
T ss_dssp CTTTCEETTEESCEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEECCBTTTSCCCC
T ss_pred ccccccccccCCcccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCC--------CHHHEEEecCCCCCCCCCC
Confidence 37899999999999999999999999999999999999999 9999999999999999999
Q ss_pred CCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------CCCCHHHHHHHHhhc---cc--eee
Q 002015 663 LTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQM------------------GSVKWETLIQQAYLQ---SV--SLS 719 (981)
Q Consensus 663 gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~------------------~~~~~~~~~~~~~~~---~~--~l~ 719 (981)
+|+|||+|+++|+||++||++||+||+++|+++++.. ..++|.+++..++.. ++ .|.
T Consensus 560 ~t~aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~el~~~a~~~~~~~~~~gl~ 639 (803)
T 1ffv_B 560 GTYGSRSTPVAGAAIALAARKIHAKARKIAAHMLEVNENDLDWEVDRFKVKGDDSKFKTMADIAWQAYHQPPAGLEPGLE 639 (803)
T ss_dssp CSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEECSSEEEESSCTTCEEEHHHHHHHHHHCCCTTCCSSEE
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEeCCEEEEcCCCCCccCHHHHHHHHHhccCccccccee
Confidence 9999999999999999999999999999999987531 124455554433200 00 011
Q ss_pred EeEEecCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccceeee
Q 002015 720 ASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMS 799 (981)
Q Consensus 720 ~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~a 799 (981)
....| . .....|+|+||++
T Consensus 640 ~~~~~------------------------------------------------------~-------~~~~~~~~ga~~a 658 (803)
T 1ffv_B 640 AVHYY------------------------------------------------------D-------PPNFTYPFGIYLC 658 (803)
T ss_dssp EEEEE------------------------------------------------------C-------CSSCBCCEEEEEE
T ss_pred eeeee------------------------------------------------------c-------CCCCCcceeEEEE
Confidence 11111 0 0123688999999
Q ss_pred EEEEEccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCCCCccccCCCCCCCCCCCCCCCCceE
Q 002015 800 QVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFN 879 (981)
Q Consensus 800 eVEVD~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~G~~l~~~~~dY~iP~~~DiP~~i~ 879 (981)
|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||++|+++|.||+||++|++.|+|+ |+
T Consensus 659 eVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~~G~~~~~~~~dY~ip~~~D~P~-i~ 737 (803)
T 1ffv_B 659 VVDIDRATGETKVRRFYALDDCGTRINPMIIEGQIHGGLTEGYAVAMGQQMPFDAQGNLLGNTLMDYFLPTAVETPH-WE 737 (803)
T ss_dssp EEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCCBCTTCCBCSCSTTTSCCCCTTTSCC-CE
T ss_pred EEEEEcCCCeEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCceEECCCCCCCCCCHhhccCCCcccCCC-eE
Confidence 99999999999999999999999999999999999999999999999999999989999999999999999999995 99
Q ss_pred EEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCC
Q 002015 880 VEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGP 954 (981)
Q Consensus 880 v~~~e~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~~ 954 (981)
++++|++ ++.+|||+||+||+++++ +++||+|||+||+.++ | +++++||+|||+||++|+.
T Consensus 738 v~~~e~p-~~~~p~GaKGvGE~~~~~---~apAiaNAI~~A~~~~-------G---~r~~~lP~tpe~v~~al~~ 798 (803)
T 1ffv_B 738 TDHTVTP-SPHHPIGAKGVAESPHVG---SIPTFTAAVVDAFAHV-------G---VTHLDMPHTSYRVWKSLKE 798 (803)
T ss_dssp EEECCCC-CTTSTTCBCCCTTHHHHH---HHHHHHHHHHHHHGGG-------T---CCCCCSCCCHHHHHHHHHH
T ss_pred EEEEeCC-CCCCCCCCccccCCccch---HHHHHHHHHHHHHHcc-------C---CccccCCCCHHHHHHHhhh
Confidence 9999986 678999999999999987 7789999999999433 2 6789999999999999864
No 8
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=100.00 E-value=1.1e-156 Score=1445.02 Aligned_cols=722 Identities=23% Similarity=0.258 Sum_probs=623.4
Q ss_pred CccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCC--ccc
Q 002015 144 SSAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQN--IGS 220 (981)
Q Consensus 144 ~~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~--~~~ 220 (981)
..|++++|.|+.+|+||+++|++|+. +|||||++++|||++||||++||+|+|+ +|||++|+|++|+|. .| .+.
T Consensus 13 ~iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aharI~sID~s~A~~~pGV~~V~t~~D~p~--~~~~~~~ 89 (788)
T 1t3q_B 13 SIGTSVLRREDTRLLTGRGRYIADLV-LSGMLHVASLRSPFAHARIVSIDVADAQALPGVELVWCGADVAE--LSQGIVA 89 (788)
T ss_dssp STTSCCCCTTHHHHHTTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEEEHHHHHT--TCCCEEE
T ss_pred cCCCCCcCcchHHhCccceecccccC-CCCCEEEEEEecCCCCEEEEEeEhHHHhhCCCeEEEEeHHHCcc--cccccCc
Confidence 47999999999999999999999996 7899999999999999999999999999 999999999999983 22 111
Q ss_pred CCC-----CCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCC-Cccc-CCccc
Q 002015 221 RTK-----FGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSS-FFEV-PSFLY 293 (981)
Q Consensus 221 ~~~-----~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a-~~~~-~~~~~ 293 (981)
... ..+.|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|+++++ +|+. ++|+.
T Consensus 90 ~~~~~~~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~i~~~~~~n~~ 166 (788)
T 1t3q_B 90 TMQVEGFQTTIQPLLANGVTRFVGEIVAVVVASSRAIAEDAAQLIQVEY--EEL-PAVTGIEAALEGEARANDTLAGNVV 166 (788)
T ss_dssp CCSSTTCCCEEECSSCCSEECSTTCEEEEEEESSHHHHHHHHTTCEEEE--EEC-CCCCSHHHHHHCSCCSCTTSSSSEE
T ss_pred ccccccccCCccccccCCeEEEcCCeEEEEEECCHHHHHHHhCCCeEEE--eeC-CCcCCHHHHhhccCcccCCCCCccc
Confidence 101 12347799999999999999999999999999999999999 889 99999999998876 3431 35652
Q ss_pred ---ccccCChhhhcccCCeEEEEEEEEEccccccCCCCCeeEEEECC-CCeEEEEeCCCChHHHHHHHHHHhCCCCceEE
Q 002015 294 ---PKSVGDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVR 369 (981)
Q Consensus 294 ---~~~~Gdve~af~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVr 369 (981)
...+||++++|++|+++ ||++|++++++|++|||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++|||
T Consensus 167 ~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~lA~~Lglp~~~Vr 245 (788)
T 1t3q_B 167 SRTSRARDELAPIFASSAGV-VRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIE 245 (788)
T ss_dssp EEEEEEECCCHHHHHHSSEE-EEEEEEECBBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEE
T ss_pred cccccccCChhhhhccCCcE-EEEEEEECCEeccCCCCceEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCChHHEE
Confidence 34789999999999986 99999999999999999999999996 68999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCC
Q 002015 370 VITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAG 449 (981)
Q Consensus 370 V~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~G 449 (981)
|+++++|||||+|... +.+++.+|++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++++++.|+|
T Consensus 246 V~~~~vGGgFG~K~~~-~~~~~~aA~~A~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~G 324 (788)
T 1t3q_B 246 VRVPDVGGGFGQKAHL-HPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGG 324 (788)
T ss_dssp EECCBCSCCTTTTSSC-CHHHHHHHHHHHHHTSCEEEECCHHHHHHHSCBBCCEEEEEEEEECTTCCEEEEEEEEEEECC
T ss_pred EEeCCCCCCCCCCCcc-chHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCCCCeEEEEEEEECCCCcEEEEEEEEEEcCC
Confidence 9999999999999874 444788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC--CCCc-hh-HhhhccCCCcccccEEEEEEEeecCCCcccccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhh
Q 002015 450 QYPD--VSPN-IP-AYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSIN 525 (981)
Q Consensus 450 ay~~--~~~~-~~-~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kN 525 (981)
+|.+ ++.. .. ....+..++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||+||
T Consensus 325 ay~~~~~~~~v~~~~~~~~~~~~Y~ipn~~~~~~~v~Tn~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lG~DP~e~R~~N 404 (788)
T 1t3q_B 325 AYNNLPWTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRN 404 (788)
T ss_dssp SSCCTTTCGGGTHHHHHHTTTTTBCCSEEEEEEEEECCSSSCBCCCTTTTHHHHHHHHHHHHHHHHHHHTCCHHHHHHTT
T ss_pred CCccccccchhHHHHHHHhcCCCcCCCcEEEEEEEEECCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHCcCHHHHHHHh
Confidence 9987 6663 33 455567799999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccccCCCCCcccC-CHHHHHHHHHHhcCChhhHHHHHHhhhcCCcceeecccccEEeecCCC----------
Q 002015 526 LHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPLM---------- 594 (981)
Q Consensus 526 l~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~grGig~a~~~~~~~~~---------- 594 (981)
++++++ +||.++.|+.+++ ++.+||++++++++|..++++..+.+..++| ||+|+++..++.+..
T Consensus 405 ~~~~~~--~p~~~~~g~~~~s~~~~~~l~~~~~~~~w~~~~~r~~~~~~~g~~--~G~GiA~~~~~~g~~~~~~~~~~~~ 480 (788)
T 1t3q_B 405 VVMPED--FPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKY--LGLGVSVFNEVTGTGTRTLSFLGTP 480 (788)
T ss_dssp BCCGGG--CSEECTTSCEECSCCHHHHHHHHHHHHCHHHHHHHHHHHHTTTEE--EEEEEEEEEEEESCCHHHHHHTTCC
T ss_pred cCCCCC--ccccCCCCcccCCCCHHHHHHHHHHhcCCchhhhhhhhhhccCCe--EEEEEEEEEeccccCcccccccccc
Confidence 998774 5678888988876 8999999999999998332222222234555 455555555655522
Q ss_pred ---CceEEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCCCCccchhhh
Q 002015 595 ---STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSE 671 (981)
Q Consensus 595 ---~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~gt~aSr~t~ 671 (981)
.+++.|+|++||+|+|.+|++|||||++|+++|||||+||| |+|+|+|..+||+ +|++++|+|||+|+
T Consensus 481 ~~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------p~~~V~v~~~DT~-~p~~~~t~aSr~t~ 551 (788)
T 1t3q_B 481 TTTHDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGV--------PASDVVIQAGSTK-NTYGFGAYASRGAV 551 (788)
T ss_dssp CCCCBEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTS--------CGGGEEEECSBTT-SCCBCCSCTTCHHH
T ss_pred cCccccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCC--------CHHHEEEecCCCC-CCCCCCCccchHHH
Confidence 58899999999999999999999999999999999999999 9999999999999 99999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------CCCCHHHHHHHHhhccceeeEeEEecCCCCcccc
Q 002015 672 ASCQAVRNCCKILVERLTPLRERLQAQM------------------GSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKY 733 (981)
Q Consensus 672 ~~g~Av~~Aa~~l~~~l~~~aa~~~~~~------------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 733 (981)
++|+||++||++||+||+++|+++++.. ..++|++++..++.....+... +. +
T Consensus 552 ~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~el~~~~~~~~~~l~~~--~~----~--- 622 (788)
T 1t3q_B 552 IGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPG--FD----A--- 622 (788)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEETTEEEETTEEEEEEEHHHHHHHHHHCGGGCCTT--CC----C---
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhCCCHHHEEEeCCEEEEccCCCCcccHHHHHHHHhhcCcccccC--cc----C---
Confidence 9999999999999999999999887631 0134554443332110000000 00 0
Q ss_pred ccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccceeeeEEEEEccCCcEEEE
Q 002015 734 LNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIV 813 (981)
Q Consensus 734 ~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVEVD~~TG~v~V~ 813 (981)
.+.. ...+ ......|+|+||++|||||++||+++|+
T Consensus 623 -~~~~------------------------------------~~~~-------~~~~~~~~~ga~~aeVeVD~~TG~v~V~ 658 (788)
T 1t3q_B 623 -TLEA------------------------------------TATY-------DPSDLVLANGGHAAIVEIDASTYATRVT 658 (788)
T ss_dssp -CCEE------------------------------------EEEC-------CCSSCEEEEEEEEEEEEEETTTCCEEEE
T ss_pred -Cccc------------------------------------cccc-------CCCCCCcceEEEEEEEEEECCCceEEEE
Confidence 0000 0000 0113468999999999999999999999
Q ss_pred EEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCCCCccccCCCCCCCCCCCCCCCCceEEEEecCCCCCCCCC
Q 002015 814 QSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVL 893 (981)
Q Consensus 814 r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~G~~l~~~~~dY~iP~~~DiP~~i~v~~~e~~~~~~gp~ 893 (981)
|+++++|||++|||++++||||||++||||+||+|++.||++|+++|.||+||++|++.|+|+ |+++++|++ ++.+||
T Consensus 659 r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~~G~~~~~~~~dY~ip~~~D~P~-i~v~~ve~~-~~~~p~ 736 (788)
T 1t3q_B 659 DFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPD-IRIRHLETP-SPLVPG 736 (788)
T ss_dssp EEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCBCBCTTSCBCCCSTTTSCCCCTTTCCC-EEEEECCCC-CTTSGG
T ss_pred EEEEEEECCccCCHHHHHHHHHHhHHHHHHHHhcceeEECCCCCCCCCChhhccCCCcccCCC-EEEEEEeCC-CCCCCC
Confidence 999999999999999999999999999999999999999988999999999999999999995 999999986 678999
Q ss_pred CccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCC
Q 002015 894 SSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGP 954 (981)
Q Consensus 894 GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~~ 954 (981)
|+||+||+++++ +++||+|||+||+.++ | +++++||+|||+||++|+.
T Consensus 737 GaKGvGE~~~~~---~a~AiaNAI~~A~~~~-------G---~r~~~lP~tpe~v~~al~~ 784 (788)
T 1t3q_B 737 GIKGMGESAMIS---APAAVVAAVNDALAHL-------E---VVIETVPITPERIFRSIQE 784 (788)
T ss_dssp GBCCCTTHHHHH---HHHHHHHHHHHHHGGG-------T---CCCCEESCCHHHHHHHHHT
T ss_pred CCccccccchhh---HHHHHHHHHHHHHHhc-------C---CccccCCCCHHHHHHHHhh
Confidence 999999999987 6789999999999432 2 6789999999999999964
No 9
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=100.00 E-value=3.1e-156 Score=1444.64 Aligned_cols=715 Identities=22% Similarity=0.284 Sum_probs=627.0
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCCc--ccC
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNI--GSR 221 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~~--~~~ 221 (981)
.|++++|.|+.+|+||+++|++|+. +|||||++++|||++||||++||+|+|+ +|||++|+|++|+|. .|. +..
T Consensus 21 iG~~~~R~d~~~kvtG~a~Y~~D~~-~pgmL~a~~vrSp~aha~I~sID~s~A~~~PGV~~V~t~~D~p~--~~~~~~~~ 97 (809)
T 1n62_B 21 MGCKRKRVEDIRFTQGKGNYVDDVK-LPGMLFGDFVRSSHAHARIKSIDTSKAKALPGVFAVLTAADLKP--LNLHYMPT 97 (809)
T ss_dssp TTCCCCCTHHHHHTTTCCCBGGGCC-CTTCEEEEEEECSCSSEEEEEEECHHHHHSTTEEEEEEHHHHGG--GTCSEEEC
T ss_pred CCCCCcCcchHHhccceeeehhhcC-CCCCEEEEEEeCCCCceEEEecchHHHhhCCCeEEEEEhHHccc--cccccccc
Confidence 7999999999999999999999996 7899999999999999999999999999 999999999999983 221 111
Q ss_pred CCCCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCC--ccc-CC--------
Q 002015 222 TKFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEV-PS-------- 290 (981)
Q Consensus 222 ~~~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~--~~~-~~-------- 290 (981)
....++|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|++++++ |+. ++
T Consensus 98 ~~~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~Aa~~v~Vey--e~l-p~v~~~~~Al~~~a~~i~~~~~~~~~~~~~~ 174 (809)
T 1n62_B 98 LAGDVQAVLADEKVLFQNQEVAFVVAKDRYVAADAIELVEVDY--EPL-PVLVDPFKAMEPDAPLLREDIKDKMTGAHGA 174 (809)
T ss_dssp TTSSEEESSCSSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCGGGTTSTTCCCCCGGGTTCCEETTEE
T ss_pred cCCCCcccccCceEEEcCCcEEEEEECCHHHHHHHhCcceEEE--EeC-CCcCCHHHHhhcCCceecccccccccccccc
Confidence 1113578999999999999999999999999999999999999 889 999999999998873 431 22
Q ss_pred ----ccc---cccc-CChhhhcccCCeEEEEEEEEEccccccCCCCCeeEEEECC-CCeEEEEeCCCChHHHHHHHHHHh
Q 002015 291 ----FLY---PKSV-GDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCL 361 (981)
Q Consensus 291 ----~~~---~~~~-Gdve~af~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~L 361 (981)
|+. ...+ ||++++|++|+++ ||++|++++++|++|||++|+|+|++ +|+|+||+|||+|+.+|..||++|
T Consensus 175 ~~~~n~~~~~~~~~~Gd~~~afa~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~~A~~L 253 (809)
T 1n62_B 175 RKHHNHIFRWEIGDKEGTDATFAKAEVV-SKDMFTYHRVHPSPLETCQCVASMDKIKGELTLWGTFQAPHVIRTVVSLIS 253 (809)
T ss_dssp CSSTTEEEEEEEECHHHHHHHHHHCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSSHHHHHHHHHHHH
T ss_pred cccccccccccccccCChhhhhccCCEE-EEEEEEECCEeccCCCCceEEEEEeCCCCeEEEEECCcChHHHHHHHHHHh
Confidence 542 2467 9999999999996 99999999999999999999999985 689999999999999999999999
Q ss_pred CCCCceEEEEeccCCCCCCCCCcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEE
Q 002015 362 GIPEHNVRVITRRVGGGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQ 441 (981)
Q Consensus 362 glp~~kVrV~~~~vGGgFG~K~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~ 441 (981)
|||++||||+++++|||||+|.. .++.+++||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+|++
T Consensus 254 glp~~~VrV~~~~vGGgFG~K~~-~~~~~~~aA~~A~~~grPVkl~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~ 332 (809)
T 1n62_B 254 GLPEHKIHVIAPDIGGGFGNKVG-AYSGYVCAVVASIVLGVPVKWVEDRMENLSTTSFARDYHMTTELAATKDGKILAMR 332 (809)
T ss_dssp CCCGGGEEEECCBCSCCTTTTSS-CCHHHHHHHHHHHHHSSCEEEECCHHHHHHHSCEECCEEEEEEEEECTTCCEEEEE
T ss_pred CCCHHHEEEEeCCCCCCCccccc-cchHHHHHHHHHHHhCCCEEEEechHHHhhhcCCCCCeEEEEEEEECCCCcEEEEE
Confidence 99999999999999999999986 34556789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCC-CCCch-hHhhhc-cCCCcccccEEEEEEEeecCCCccc-ccCCCCh-hHHHHHHHHHHHHHHHHcCC
Q 002015 442 LNILIDAGQYPD-VSPNI-PAYMIG-ALKKYDWGALHFDIKVCRTNLPSRT-AMRAPGE-VQGSFIAEAVIEHVASTLSM 516 (981)
Q Consensus 442 ~~~~~d~Gay~~-~~~~~-~~~~~~-~~g~Y~ipn~~~~~~~v~TN~~p~g-a~RG~G~-pq~~fa~E~~mD~lA~~lG~ 516 (981)
++++.|+|+|.. ++..+ .....+ ..++|+|||++++++.|+||++|+| +|||||. ||++|++|++||++|++|||
T Consensus 333 ~~~~~d~Gay~~~~~~~v~~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~g~a~Rg~G~~~q~~fa~E~~mDelA~~lG~ 412 (809)
T 1n62_B 333 CHVLADHGAFDACADPSKWPAGFMNICTGSYDMPVAHLAVDGVYTNKASGGVAYRCSFRVTEAVYAIERAIETLAQRLEM 412 (809)
T ss_dssp EEEEEECCSSCCCCCCTTCTTTTGGGTTTTBCCSCEEEEEEEECCSSCCEESCSSCTTTHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEeCCcCcccccchhhhhhhhhhcCCCcCCCcEEEEEEEEECCCCCCCCEecCCCccHHHHHHHHHHHHHHHHHHCc
Confidence 999999999965 66533 223233 4789999999999999999999999 9999999 99999999999999999999
Q ss_pred CHHHHHHhhcCCCCCccccccCCCCCcccC-CHHHHHHHHHHhcCChhhHHHHH----HhhhcCCcceeecccccEEeec
Q 002015 517 EVDFVRSINLHTHNSLNLFYESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIK----EFNRSNLWRKKGISRVPIVYDV 591 (981)
Q Consensus 517 DP~e~R~kNl~~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~grGig~a~~~~~~ 591 (981)
||+|||+||++++++ +||.+++|+.+++ ++.+||++++++++|.+++++.. .||...+|++||+|++++.++.
T Consensus 413 DP~e~R~~N~~~~~~--~p~~~~~g~~~~~~~~~~~l~~~~~~~~w~~~~~~~~~~~~~fn~g~~~~~rGiGia~~~~~~ 490 (809)
T 1n62_B 413 DSADLRIKNFIQPEQ--FPYMAPLGWEYDSGNYPLAMKKAMDTVGYHQLRAEQKAKQEAFKRGETREIMGIGISFFTEIV 490 (809)
T ss_dssp CHHHHHHHHBCCGGG--CSEECTTSCEECCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEECCB
T ss_pred CHHHHHHHhccCCCC--CccccCCCcccCCCCHHHHHHHHHHHcCchhhHHhHHhhhhhhccCCCceeEEEEEEEEEEee
Confidence 999999999998774 4677888988876 89999999999999986543332 3443333567888888888776
Q ss_pred CCC------------CceEEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCccc
Q 002015 592 PLM------------STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVI 659 (981)
Q Consensus 592 ~~~------------~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p 659 (981)
+.. .+++.|+|++||+|+|.+|++|||||++|+++|||||+||| |+|+|+|..+||+.+|
T Consensus 491 g~~~~~~~~~~~~~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi--------p~e~V~v~~~DT~~~p 562 (809)
T 1n62_B 491 GAGPSKNCDILGVSMFDSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGI--------PADDIMIEEGNTDTAP 562 (809)
T ss_dssp SCCCTTTCEETTEECCEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEECCBTTTSC
T ss_pred cccccccccccccCCcccEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHhCC--------CHHHEEEecCCCCCCC
Confidence 643 37899999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------CCCCHHHHHHHHhhc---cc--
Q 002015 660 QGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQM------------------GSVKWETLIQQAYLQ---SV-- 716 (981)
Q Consensus 660 ~~~gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~------------------~~~~~~~~~~~~~~~---~~-- 716 (981)
++++|+|||+|+++|+||++||++||+||+++|+++++.. ..++|++++..++.. .+
T Consensus 563 ~~~~t~aSr~t~~~G~Av~~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 642 (809)
T 1n62_B 563 YGLGTYGSRSTPTAGAATAVAARKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTMKELAWASYNSPPPNLEP 642 (809)
T ss_dssp CCCCSCTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGEEECSSEEEETTEEEEEEEHHHHHHHHHHSCCTTSCS
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEeCCEEEEccCCCCcccHHHHHHHHhhccCccccc
Confidence 9999999999999999999999999999999999987531 013455544333210 00
Q ss_pred eeeEeEEecCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccce
Q 002015 717 SLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGA 796 (981)
Q Consensus 717 ~l~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 796 (981)
.|.....| . .....|+|+|
T Consensus 643 ~l~~~~~~------------------------------------------------------~-------~~~~~~~~ga 661 (809)
T 1n62_B 643 GLEAVNYY------------------------------------------------------D-------PPNMTYPFGA 661 (809)
T ss_dssp SCEEEEEE------------------------------------------------------C-------CSSCBCCEEE
T ss_pred cceeeeec------------------------------------------------------c-------CCCCccceeE
Confidence 01111111 0 0124689999
Q ss_pred eeeEEEEEccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeCCCCccccCCCCCCCCCCCCCCCC
Q 002015 797 LMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPK 876 (981)
Q Consensus 797 ~~aeVEVD~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~G~~l~~~~~dY~iP~~~DiP~ 876 (981)
|++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+||+.||++|+++|+||+||+||++.|+|+
T Consensus 662 ~~aeVeVD~~TG~v~V~r~~~v~D~G~viNP~~~~gQieGG~~qGlG~aL~Ee~~~d~~G~~~~~~~~dY~ip~~~D~P~ 741 (809)
T 1n62_B 662 YFCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPK 741 (809)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCEECTTCCEESCSTTTSCCCCTTTSCC
T ss_pred EEEEEEEECCcCeEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCceEECCCCCCCCCChhhccCCChhhCCC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999995
Q ss_pred ceEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcC
Q 002015 877 QFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCG 953 (981)
Q Consensus 877 ~i~v~~~e~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~ 953 (981)
|+++++|++ ++.+|||+||+||+++++ +++||+|||+||+.++ | +++++||+|||+||++|.
T Consensus 742 -i~v~~ve~~-~~~~p~GaKGvGE~~~~~---~apAiaNAI~~A~~~~-------G---~r~~~lP~tpe~v~~al~ 803 (809)
T 1n62_B 742 -WETDYTVTP-SPHHPIGAKGVGESPHVG---GVPCFSNAVNDAYAFL-------N---AGHIQMPHDAWRLWKVGE 803 (809)
T ss_dssp -CEEEECCCC-CTTSTTSBCCCTTHHHHH---HHHHHHHHHHHHHHTT-------T---CCCCCSCCCHHHHHHHHH
T ss_pred -eEEEEEeCC-CCCCCCCCcccCCcccch---HHHHHHHHHHHHHHhc-------C---CccccCCCCHHHHHHHHH
Confidence 999999986 678999999999999987 7789999999999432 2 678999999999999985
No 10
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=100.00 E-value=2e-155 Score=1430.57 Aligned_cols=717 Identities=22% Similarity=0.283 Sum_probs=629.2
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCCcccCCC
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQNIGSRTK 223 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~~~~~~~ 223 (981)
.|++++|.|+.+|+||+++|++|+. +|||||++++|||++||||++||+|+|+ +|||++|+|++|+|. |.+....
T Consensus 11 iG~~~~R~d~~~kvtG~a~Y~~D~~-~~gmL~a~~vrSp~aharI~siD~s~A~~~pGV~~V~t~~Dip~---~~g~~~~ 86 (769)
T 1rm6_A 11 VGVRTPLVDGVEKVTGKAKYTADIA-APDALVGRILRSPHAHARILAIDTSAAEALEGVIAVCTGAETPV---PFGVLPI 86 (769)
T ss_dssp TTSCCCCTTHHHHHHTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHHSTTEEEEEEGGGCCS---CBCSSTT
T ss_pred CCCCCcCcchHHhccceeeehhccC-CCCCEEEEEEECCCCCeEEEeeehhHHhcCCCeEEEEehHHcCC---ccCCCCC
Confidence 6999999999999999999999996 8899999999999999999999999999 999999999999983 3322111
Q ss_pred CCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCC--cc-cCCccc---cccc
Q 002015 224 FGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FE-VPSFLY---PKSV 297 (981)
Q Consensus 224 ~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~--~~-~~~~~~---~~~~ 297 (981)
..++|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|++++++ |+ .++|+. ...+
T Consensus 87 ~~~~~~la~~~Vry~Gq~VA~VvA~t~~~A~~A~~~v~Vey--e~l-p~v~~~~~al~~~a~~~~~~~~~n~~~~~~~~~ 163 (769)
T 1rm6_A 87 AENEYPLARDKVRYRGDPVAAVAAIDEVTAEKALALIKVDY--EVL-PAYMTPKAAMKAGAIALHDDKPNNILREVHAEF 163 (769)
T ss_dssp CCCBCSSCSSEECSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCSHHHHHSTTCCCSSTTCTTSEEEEEEEEE
T ss_pred CCCcccccCCEEEEcCCeEEEEEECCHHHHHHHhCCCeEEE--eeC-CCCCCHHHHhccCCceeccCCCCcccccccccc
Confidence 45788999999999999999999999999999999999999 889 999999999998875 33 125652 3478
Q ss_pred CChhhhcccCCeEEEEEEEEEccccccCCCCCeeEEEECC-CCeEEEEeCCCChHHHHHHHHHHhCCCCceEEEEeccCC
Q 002015 298 GDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDE-DNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVG 376 (981)
Q Consensus 298 Gdve~af~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~~-dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vG 376 (981)
||++++|++|+++ ||++|++++++|++|||++|+|+|++ +|+|+||+|||+|+.+|..||++||||++||||+++++|
T Consensus 164 Gd~~~a~a~A~~v-ve~~y~~~~~~h~~mEp~~~~A~~~~~~g~l~v~~stQ~p~~~r~~~A~~Lglp~~~VrV~~~~vG 242 (769)
T 1rm6_A 164 GDVAAAFAEADLI-REKTYTFAEVNHVHMELNATLAEYDPVRDMLTLNTTTQVPYYVHLKVAACLQMDSARIRVIKPFLG 242 (769)
T ss_dssp SCHHHHHHTCSEE-EEEEEEECCBCCCCSSCCEEEEEEETTTTEEEEEECCSCHHHHHHHHHHHHTCCGGGEEEECCBCC
T ss_pred CChhhhhccCCEE-EEEEEEECCccccCCCCceEEEEEeCCCCeEEEEECCcCHHHHHHHHHHHhCCCHHHEEEEeCCCC
Confidence 9999999999996 99999999999999999999999996 689999999999999999999999999999999999999
Q ss_pred CCCCCCCcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC
Q 002015 377 GGFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP 456 (981)
Q Consensus 377 GgFG~K~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~ 456 (981)
||||+|... +..++.+|++|+++||||||+|||+|+|+.+.+||++.+++|+|+|+||+|+|++++++.|+|+|.+++.
T Consensus 243 GgFG~K~~~-~~~~~~aA~~A~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~d~Gay~~~~~ 321 (769)
T 1rm6_A 243 GGFGARTEA-LHFEIIAGLLARKAKGTVRLLQTREETFIAHRGRPWTEVKMKIGLKKDGKIAALALEATQAGGAYAGYGI 321 (769)
T ss_dssp CCTTTTSSC-CHHHHHHHHHHHHHTSEEEEECCHHHHHHHCCCBCEEEEEEEEEECTTSCEEEEEEEEEEECCSSCTTHH
T ss_pred CCCCCcccc-ccHHHHHHHHHHHhCCCEEEEecHHHHhhhcCCCCCEEEEEEEEECCCCeEEEEEEEEEEeCCcCcccch
Confidence 999999863 3147888999999999999999999999999999999999999999999999999999999999988765
Q ss_pred -chhHhhhccCCCcccccEEEEEEEeecCCCcccccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCcccc
Q 002015 457 -NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLF 535 (981)
Q Consensus 457 -~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~ 535 (981)
++.....+..++|+|||++++++.|+||++|+|+|||||.||++|++|++||++|++|||||+|||+||++++++. |
T Consensus 322 ~v~~~~~~~~~~~Y~ipn~~~~~~~v~TN~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N~~~~~~~--~ 399 (769)
T 1rm6_A 322 ITILYTGALMHGLYHIPAIKHDAWRVYTNTPPCGAMRGHGTVDTRAAFEALLTEMGEELGIDSLKIRQINMLPQIPY--V 399 (769)
T ss_dssp HHHHHHHHTTSSSBCCSCEEEEEEEECCSSSCCCCCSSTTTHHHHHHHHHHHHHHHHHHTCCHHHHHHHTBCSSSSE--E
T ss_pred HHHHHHHHhcCCCcCCCcEEEEEEEEECCCCCCccccCCChHHHHHHHHHHHHHHHHHHCcCHHHHHHHhCCCCCCC--c
Confidence 3334445677999999999999999999999999999999999999999999999999999999999999987753 2
Q ss_pred ccCCCCCcccC-CHHHHHHHHHHhcCChhhHHHHHHhhhcCCcceeecccccEEeecCC---------CCceEEEEEeeC
Q 002015 536 YESSAGELEEY-TIPLIWDRLAVSSSFNQRTEVIKEFNRSNLWRKKGISRVPIVYDVPL---------MSTPGKVSILSD 605 (981)
Q Consensus 536 ~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~grGig~a~~~~~~~~---------~~~~a~v~l~~D 605 (981)
++.|+.+++ ++.+||++++++++|.+++++. .++ ||+|+++..+++++ ..+++.|+|++|
T Consensus 400 --~~~g~~~~s~~~~~~l~~~~~~~~w~~r~~~~------~~g--rG~Gia~~~~~~g~~~~~~~~~~~~~~a~v~l~~d 469 (769)
T 1rm6_A 400 --TMYAQRVMSYGVPECLEKVKAASGWEERKGKL------PKG--RGLGIALSHFVSGTSTPKHWTGEPHATVNLKLDFD 469 (769)
T ss_dssp --CTTCCEECCCCHHHHHHHHHHHHTHHHHTTCS------CTT--EEEEEEEEEEESSCSSCSSCCCCCSEEEEEEECTT
T ss_pred --CCCCccccCCCHHHHHHHHHHhCCchhhhhhh------ccC--ceEEEEEEEEecccCccccccCCCCccEEEEEeCC
Confidence 566877766 8999999999999997653321 122 67777777777653 248899999999
Q ss_pred CcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCCCCccchhhhhHHHHHHHHHHHHH
Q 002015 606 GSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEASCQAVRNCCKILV 685 (981)
Q Consensus 606 G~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~l~ 685 (981)
|+|+|.+|++|||||++|+++|||||+||| |+|+|+|..+||+.+|++++|+|||+|+++|+||++||++||
T Consensus 470 G~v~v~~g~~e~GqG~~T~~aQiaAe~Lgi--------p~e~V~v~~~DT~~~p~~~~t~aSr~t~~~G~Av~~Aa~~l~ 541 (769)
T 1rm6_A 470 GGITLLTGAADIGQGSNTMASQVAAEVLGV--------RLSRIRVISADSALTPKDNGSYSSRVTFMVGNASISAAEELK 541 (769)
T ss_dssp CCEEEEECCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEEESBTTTSCCCCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCccCCCCHHHHHHHHHHHHhCC--------CHHHEEEecCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc------------------cCCCCHHHHHHHHhhccceeeEeEEecCCCCccccccceeEEEeeeccc
Q 002015 686 ERLTPLRERLQAQ------------------MGSVKWETLIQQAYLQSVSLSASSLYLPDFTSMKYLNYGAAVSEVSFSI 747 (981)
Q Consensus 686 ~~l~~~aa~~~~~------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~e~~~~~ 747 (981)
+||+++|+++++. +..++|++++..++..++.+.....|.... . +.. . .
T Consensus 542 ~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~-~---~~~-~---~----- 608 (769)
T 1rm6_A 542 GVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMVDSGTITVKGTYTCPT-E---FQG-D---K----- 608 (769)
T ss_dssp HHHHHHHHHHTTCCGGGEEEETTEEEETTCSSCCEEHHHHHHHHHTTTCSEEEEEEECCCG-G---GSC-C---T-----
T ss_pred HHHHHHHHHHhCCCHHHeEEeCCEEEEccCCCCccCHHHHHHhhhhcccccccccceeccc-c---ccc-c---c-----
Confidence 9999999998763 124678888876654444454433332200 0 000 0 0
Q ss_pred cccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccceeeeEEEEEccCCcEEEEEEEEEeccCcccCh
Q 002015 748 SMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYGALMSQVEINLLTGETTIVQSDIIYDCGQSLNP 827 (981)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aeVEVD~~TG~v~V~r~~~v~D~G~~INP 827 (981)
.+ . .........|+|+||++|||||++||+++|+|+++++|||++|||
T Consensus 609 ------~g------------------------~--~~~~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP 656 (769)
T 1rm6_A 609 ------KI------------------------R--GSAIGATMGFCYAAQVVEASVDEITGKVTAHKVWVAVDVGKALNP 656 (769)
T ss_dssp ------TC------------------------G--GGGTTCCSCEEEEEEEEEEEECTTTCCEEEEEEEEEEECSSCSSH
T ss_pred ------cc------------------------c--ccccCCCCCcceEEEEEEEEEECCCceEEEEEEEEEEECCccCCH
Confidence 00 0 000001236899999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHhhHhHHhcccceeCCCCccccCCCCCCCCCCCCCCCCceEEEEecCCCCCCCCCCccccCCCCccchh
Q 002015 828 AVDLGQIEGSFVQGIGFFMLEEYPTNSDGLVVSEGTWTYKIPTLDTIPKQFNVEILNSGHHKKRVLSSKASGEPPLLLAV 907 (981)
Q Consensus 828 ~~v~GQi~Ggi~qGiG~AL~Ee~~yd~~G~~l~~~~~dY~iP~~~DiP~~i~v~~~e~~~~~~gp~GaKGvGE~~~~~~~ 907 (981)
++++||||||++||||+||+||+.||+ |+++|.||+||++|++.|+|+ |+++++|++ ++.+|||+||+||+++++
T Consensus 657 ~~~~gQieGG~~qGiG~aL~Ee~~~d~-G~~~~~~~~dY~ip~~~D~P~-i~v~~ve~~-~~~~p~GaKGvGE~~~~~-- 731 (769)
T 1rm6_A 657 LAVEGQTQGGVWMGMGQALSEETVYDN-GRMVHGNILDYRVPTIVESPD-IEVIIVESM-DPNGPFGAKEASEGMLAG-- 731 (769)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCEET-TEESCCSTTTSCCCCTTTCCE-EEEEEECCC-CTTSGGGCCCCSSTTTTT--
T ss_pred HHHHHHHHhHHHHHHHHHhcceeEecC-CEeCCCChhhccCCCcccCCC-EEEEEEeCC-CCCCCCCCccccccchhh--
Confidence 999999999999999999999999997 999999999999999999995 999999986 678999999999999987
Q ss_pred hHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCC
Q 002015 908 SVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGP 954 (981)
Q Consensus 908 av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~~ 954 (981)
+++||+|||++|+| +++++||+|||+||++|+.
T Consensus 732 -~~~AIaNAv~~A~G-------------~r~~~lP~tpe~v~~al~~ 764 (769)
T 1rm6_A 732 -FLPAIHEAVYEAVG-------------VRATDFPLSPDRITELLDA 764 (769)
T ss_dssp -HHHHHHHHHHHHHS-------------CCCCEESCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhC-------------CCcccCCCCHHHHHHHHhh
Confidence 78899999999996 5788999999999999853
No 11
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=4.3e-94 Score=830.79 Aligned_cols=398 Identities=26% Similarity=0.410 Sum_probs=364.2
Q ss_pred ccccccccCccccccceeeeeecCCCCCCeEEEEEccCCCCCeEEEeEecCCCC-CCCEEEEEEccCCCcCCCC-cccCC
Q 002015 145 SAEQVVRLSREYFPVGEAIFVDDIPSPINCLYGAFVYSTKPLVRIRSVEIKSKS-LPGVSAFLSYKDIPEAGQN-IGSRT 222 (981)
Q Consensus 145 ~g~~~~r~~~~~~~tG~a~Y~~Di~~~pgmL~a~vvrSp~a~arI~sID~s~A~-~pGVv~V~T~~D~p~~g~~-~~~~~ 222 (981)
+|++++|.|+..|+||+++|++|+. +|||||++++|||++||+|+|||+|+|+ +|||++|+|++|+| +.| ++ .
T Consensus 8 iG~~~~R~d~~~kvtG~a~Y~~Di~-~pgmL~a~~vrSp~a~a~I~siD~s~A~~~pGV~~V~t~~d~p--~~~~~~--~ 82 (425)
T 3hrd_A 8 LGKNKVKVDSLEKVMGTAKFAADYS-FPDMLYAGVFRSTVPHARIVSLDLSKARAIDGVEAVLDYHAIP--GKNRFG--I 82 (425)
T ss_dssp TBCCCCCTTHHHHHHTCCCBGGGCC-CTTCEEEEEEECSSSSEEEEEEECHHHHTSTTEEEEECGGGCS--SCCCBC--S
T ss_pred cCCcCcCcchHHHCCCceecccccC-CCCCEEEEEEeCCCCCEEEEEeEhHHHhcCCCeEEEEEcccCC--CcCcCC--C
Confidence 6999999999999999999999997 7899999999999999999999999999 99999999999998 333 22 2
Q ss_pred CCCCccccCCCceeecCCcEEEEEeCCHHHHHHhcccceEEEccCCCCCCCCCHHHHhcCCCC--cccCCccc---cccc
Q 002015 223 KFGPEPLFADELTHCAGQPIAFVVADTQKIANRAADLAVVDYDVGNLEPPILSVEEAVGRSSF--FEVPSFLY---PKSV 297 (981)
Q Consensus 223 ~~~~~p~la~~~Vry~G~pVA~VvAe~~~~A~~A~~lI~Vey~~e~l~p~v~d~~~Al~~~a~--~~~~~~~~---~~~~ 297 (981)
...++|+|++++|||+|||||+|||+|+|+|++|+++|+||| |+| |+++|+++|++++++ ++ ++|+. ....
T Consensus 83 ~~~~~~~la~~~Vr~~G~~VA~VvA~t~~~A~~A~~~v~V~y--e~l-p~v~~~~~a~~~~a~~~~~-~~n~~~~~~~~~ 158 (425)
T 3hrd_A 83 IIKDEPCLVDDKVRRYGDAIAVVAAQTPDLVQEALDAITIEY--EEL-EGIFTMERALEEDSPAIHG-DTNIHQVKHLEY 158 (425)
T ss_dssp SSCCBCSSCSSCBCSTTCEEEEEEESSHHHHHHHHHHCEEEE--EEC-CCCCCHHHHHSTTSCCSST-TCSEEEEEEEEE
T ss_pred CCCccccccCceEEECCCeEEEEEECCHHHHHHHhcCCeEEE--EeC-CCCCCHHHHhhcCCccccC-CCcccccccccc
Confidence 245889999999999999999999999999999999999999 889 999999999998874 33 34542 3578
Q ss_pred CChhhhcccCCeEEEEEEEEEccccccCCCCCeeEEEECCCCeEEEEeCCCChHHHHHHHHHHhCCCCceEEEEeccCCC
Q 002015 298 GDISKGMNEADHKILSAEVKLGSQYYFYMETQTALAVPDEDNCLVVYSSIQCPEYAHATIARCLGIPEHNVRVITRRVGG 377 (981)
Q Consensus 298 Gdve~af~~A~~vvve~~y~~~~~~h~~mEp~~avA~~~~dg~l~V~~stQ~p~~~r~~lA~~Lglp~~kVrV~~~~vGG 377 (981)
||++++|++|+++ ||++|++++++|++|||++|+|+|+++|+|+||+|||+|+.+|..||++||||++||||+++++||
T Consensus 159 Gd~~~a~a~A~~v-ve~~y~~~~~~H~~mEp~~~~A~~~~~g~l~v~~stQ~p~~~r~~vA~~Lglp~~~VrV~~~~vGG 237 (425)
T 3hrd_A 159 GDVDAAFKQCDIV-VEDTYSTHRLTHMFIEPDAGVSYYDNEGMLTVVVSTQNPHYDRGEVAGMLALPNSKVRIIQATTGG 237 (425)
T ss_dssp SCHHHHHHTCSEE-EEEEEEECCCCCCCSSCCEEEEEECTTCCEEEEECCSCHHHHHHHHHHHTTCCGGGEEEEECBCCC
T ss_pred CCHHHHhhcCceE-EEEEEEeCCccccCCCCceEEEEECCCCeEEEEECCCCHHHHHHHHHHHhCCChhhEEEEeCCCCC
Confidence 9999999999996 999999999999999999999999977799999999999999999999999999999999999999
Q ss_pred CCCCCCcccchHHHHHHHHHHhCCCcEEEEcCHHHHHhhcCCCCceEEEEEEEeCCCCcEEEEEEEEEEeCCCCCCCCC-
Q 002015 378 GFGGKAIKAMPVATACALAAYKLCRPVRIYVNRKTDMVMAGGRHPMKIEYNVGFKSNGKITALQLNILIDAGQYPDVSP- 456 (981)
Q Consensus 378 gFG~K~~~~~~~~~~aAlaA~~~gRPVkl~~sR~E~~~~~~~R~~~~~~~r~g~d~dG~i~a~~~~~~~d~Gay~~~~~- 456 (981)
|||+|.+. . .+++||++|+++||||||+|||+|+|+++++||++.+++|+|+|+||+|+||+++++.|+|+|.++++
T Consensus 238 gFG~K~~~-~-~~~~aa~~A~~~grPVk~~~tR~e~~~~~~~R~~~~~~~~~g~d~dG~i~a~~~~~~~~~Ga~~~~~~~ 315 (425)
T 3hrd_A 238 GFGGKLDL-S-VQCHCALLTYHTKKPVKMVRSREESTTVSSKRHPMTMHCKTGATKDGRLQAVQVEMFGDTGAYASYGPA 315 (425)
T ss_dssp CTTTTSSC-S-SHHHHHHHHHHHCSCEEEECCHHHHHHHSCBCCCEEEEEEEEECTTCCEEEEEEEEEEEEESSCTTHHH
T ss_pred CCCCCccc-C-HHHHHHHHHHHhCCCEEEEeehHHHhhhcCCCCCeEEEEEEEECCCCcEEEEEEEEEEccccccccchH
Confidence 99999863 3 34688999999999999999999999999999999999999999999999999999999999987765
Q ss_pred chhHhhhccCCCcccccEEEEEEEeecCCCcccccCCCChhHHHHHHHHHHHHHHHHcCCCHHHHHHhhcCCCCCccccc
Q 002015 457 NIPAYMIGALKKYDWGALHFDIKVCRTNLPSRTAMRAPGEVQGSFIAEAVIEHVASTLSMEVDFVRSINLHTHNSLNLFY 536 (981)
Q Consensus 457 ~~~~~~~~~~g~Y~ipn~~~~~~~v~TN~~p~ga~RG~G~pq~~fa~E~~mD~lA~~lG~DP~e~R~kNl~~~~~~~~~~ 536 (981)
.+.....+..++|+|||++++++.|+||+||+|||||||.+|++|++|++||++|++|||||+|||+||++++++.
T Consensus 316 ~~~~~~~~~~~~Y~ipn~~~~~~~v~tn~~~~ga~Rg~G~~q~~fa~E~~mDelA~~lg~DP~e~R~~N~~~~~~~---- 391 (425)
T 3hrd_A 316 VITRATVHCMGPYVVPNVRVDAKFVYTNNPMSGAFRGFGVPQASVCHEGQMNALAKALGMDPIDIRILNAHQVGAK---- 391 (425)
T ss_dssp HHHHHHHHTTCSBCCSCEEEEEEEEECSSSCBCCCTTTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHBCCTTCB----
T ss_pred HHHHHHhhcCCCccCCcEEEEEEEEECCCCCCCcccCCCchHHHHHHHHHHHHHHHHhCcCHHHHHHHhCCCCCCc----
Confidence 3334445567899999999999999999999999999999999999999999999999999999999999998753
Q ss_pred cCCCCCcc-cC-CHHHHHHHHHHhc
Q 002015 537 ESSAGELE-EY-TIPLIWDRLAVSS 559 (981)
Q Consensus 537 ~~~~g~~~-~~-~~~~~l~~~~~~~ 559 (981)
+++|+.+ ++ ++.+||+++++++
T Consensus 392 -~~~g~~~~~s~~~~~~l~~~~~~~ 415 (425)
T 3hrd_A 392 -LATGQVLENSVGLIETLEKAREKA 415 (425)
T ss_dssp -CTTSCBCCSCCCHHHHHHHHHHHH
T ss_pred -CCCCCEECCCCCHHHHHHHHHHHH
Confidence 4678887 55 8999999998865
No 12
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=100.00 E-value=6.3e-66 Score=576.20 Aligned_cols=303 Identities=25% Similarity=0.314 Sum_probs=267.0
Q ss_pred ceeecccccEEeecCC----CCceEEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcC
Q 002015 578 RKKGISRVPIVYDVPL----MSTPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQA 653 (981)
Q Consensus 578 ~grGig~a~~~~~~~~----~~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~ 653 (981)
++||+|++++.++++. ..+++.|+|++||+|+|.+|.+|||||++|+++||+||+||+ |+|+|+|..+
T Consensus 2 k~rGiGia~~~~~~g~~~~~~~~~a~v~i~~DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi--------~~e~V~v~~~ 73 (330)
T 3hrd_B 2 KKRGKGVGSMWYGIGNTGLPNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGL--------DYEKIHVTWG 73 (330)
T ss_dssp EEEEEEEEEEEEECSSTTSCCCEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHHTC--------CGGGEEEEES
T ss_pred cEEEEEEEEEEEecCCCCCCCcceEEEEEeCCCeEEEEECCCCCCCCHHHHHHHHHHHHhCC--------CHHHEEEEec
Confidence 4578888888887772 248899999999999999999999999999999999999999 9999999999
Q ss_pred CCCcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcc------------------CCCCHHHHHHHHhhcc
Q 002015 654 DTLSVIQGGLTAGSTKSEASCQAVRNCCKILVERLTPLRERLQAQM------------------GSVKWETLIQQAYLQS 715 (981)
Q Consensus 654 DT~~~p~~~gt~aSr~t~~~g~Av~~Aa~~l~~~l~~~aa~~~~~~------------------~~~~~~~~~~~~~~~~ 715 (981)
||+.+|++++|+|||+|+++|+|+++||++||++|+++|+++++.+ ..++|.+++..++..+
T Consensus 74 DT~~~p~~~~T~gSrst~~~g~Av~~Aa~~lr~~L~~~AA~~~~~~~~~l~~~~G~v~~~~~~~~~~s~~ela~~a~~~~ 153 (330)
T 3hrd_B 74 DTMVTPDGGATSASRQTLITGNAVILACRQAKETLAKTAAEKLDCAPEELSFRDNTVFITADPERSMTYGELMAAMKAAG 153 (330)
T ss_dssp BTTTSCCCCCSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCSSSCCCSSSBCCCCSSCSCSCCBHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcchHhHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHEEEeCCEEEECCCCCCcccHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999999887531 2578999998887777
Q ss_pred ceeeEeEEecCCCCccccccceeEEEeeeccccccccccchhhhhhhhhhHHhhhhhhhhhccccccccccccccccccc
Q 002015 716 VSLSASSLYLPDFTSMKYLNYGAAVSEVSFSISMDCFSHFFAFKIFLLSSILEKRSLNLIYHLDRQIILPYCSTLKYIYG 795 (981)
Q Consensus 716 ~~l~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (981)
..+...+.|.+....+ . . + ..+ ......|+|+
T Consensus 154 ~~l~~~g~~~~~~~~~---~--~---~---------------------------------~~~-------~~~~~~~~~g 185 (330)
T 3hrd_B 154 RMAVGAGSYNPNTTGL---A--P---E---------------------------------NMS-------GIPFEVYSYA 185 (330)
T ss_dssp CCEEEEEEECCCCCCC---C--T---T---------------------------------TCC-------SCCCSCEEEE
T ss_pred CceeEEEEecCCCCcc---c--c---c---------------------------------ccc-------CCCCCCCcee
Confidence 7788877776532110 0 0 0 000 0112468999
Q ss_pred eeeeEEEEEccCCcEEEEEEEEEeccCcccChhhhhhhhhhhHHhhHhHHhcccceeC-CCCccccCCCCCCCCCCCCCC
Q 002015 796 ALMSQVEINLLTGETTIVQSDIIYDCGQSLNPAVDLGQIEGSFVQGIGFFMLEEYPTN-SDGLVVSEGTWTYKIPTLDTI 874 (981)
Q Consensus 796 a~~aeVEVD~~TG~v~V~r~~~v~D~G~~INP~~v~GQi~Ggi~qGiG~AL~Ee~~yd-~~G~~l~~~~~dY~iP~~~Di 874 (981)
||++|||||++||+++|+|+++++|||++|||++++||||||++||||+||+|++.|| ++|++++.||+||++|++.|+
T Consensus 186 a~~~eVeVd~~tG~v~v~~~~~~~D~G~~iNp~~~~gQi~Gg~~~Glg~al~E~~~~d~~~G~~~~~~~~~Y~ip~~~d~ 265 (330)
T 3hrd_B 186 TTIAEVEVDTETGEVDVLKVVSAHDVGTPINRSMVEGQIEGGVTMGQGFVLMEEIEVNTKNGAIKNPSMSKYIIPSNRDV 265 (330)
T ss_dssp EEEEEEEEETTTCCEEEEEEEEEEEEESCSBHHHHHHHHHHHHHHHHHHHHTCCCCBCTTTCCBSCCSTTTSCCCCTTTC
T ss_pred EEEEEEEEECCCCcEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHhcCceEEeCCCCeECCCCHHHCcCCCcccC
Confidence 9999999999999999999999999999999999999999999999999999999998 679999999999999999999
Q ss_pred CCceEEEEecCCCCCCCCCCccccCCCCccchhhHHHHHHHHHHHHHHhhhcccccCCCCcccccCCCCCHHHHHHhcCC
Q 002015 875 PKQFNVEILNSGHHKKRVLSSKASGEPPLLLAVSVHCATRAAIREARKQLLSWSQLDQSDLTFDLEVPATVQVVKELCGP 954 (981)
Q Consensus 875 P~~i~v~~~e~~~~~~gp~GaKGvGE~~~~~~~av~~AI~nAi~~A~~~~~~~~~~~g~~~~~~~~lP~Tpe~v~~al~~ 954 (981)
|+ |+++++|++ ++.+|||+||+||+++++ +++||+|||++|+| +++++||+|||+||++|+.
T Consensus 266 P~-i~v~~~~~~-~~~~p~GakgvGE~~~~~---~~~Ai~nAi~~A~G-------------~r~~~lP~tpe~i~~al~~ 327 (330)
T 3hrd_B 266 PE-IHSILVESE-GGPGPFGAKGVGEPALIP---MIPAVVAAIEDALG-------------TRFTHTPIMPKDIVAAVKA 327 (330)
T ss_dssp CE-EEEEEEECS-CCSSGGGCCCCTTTTTTT---HHHHHHHHHHHHHT-------------SCCCBSCCCHHHHHHHHHH
T ss_pred CC-EEEEEecCC-CCCCCCcccccCcCcccc---hHHHHHHHHHHHhC-------------CccccCCCCHHHHHHHHHh
Confidence 95 999999986 577999999999999987 77899999999996 6789999999999999853
No 13
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=99.91 E-value=3.5e-25 Score=219.60 Aligned_cols=89 Identities=45% Similarity=0.787 Sum_probs=79.8
Q ss_pred eEEEEEECCEEE-EeccCCCCCchHHHHhcCCCCcCCCcCc---------Eeee----------cccccCC---------
Q 002015 12 HSVVFAVNGEKF-EVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVD----------AEKTHRP--------- 62 (981)
Q Consensus 12 ~~i~~~vNg~~~-~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~d----------g~~~~~~--------- 62 (981)
..|+|+|||+.+ ++ +++|+++|+||||++++|||||.|| |+|| |+++++|
T Consensus 3 ~~i~~~vNG~~~~~~-~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~G 81 (164)
T 3nvw_A 3 DELVFFVNGKKVVEK-NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHH 81 (164)
T ss_dssp CCEEEEETTEEEEET-TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTT
T ss_pred ceEEEEECCEEEEEe-cCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEccccccccccCCcEEehhhhhHHHhCC
Confidence 469999999997 55 7999999999999999999999999 9999 8988653
Q ss_pred --------------------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHH
Q 002015 63 --------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKS 99 (981)
Q Consensus 63 --------------------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~ 99 (981)
.|||||+ +|+++||+++|+|||||||||++|++|+++
T Consensus 82 ~~I~TiEGL~~~~~~lhpvQ~af~~~~~~QCGfCtPG~imsa~aLl~~~p~pt~~eI~~al~GNlCRCTgY~~I~~Av~~ 161 (164)
T 3nvw_A 82 VAVTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRT 161 (164)
T ss_dssp CEEECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHTSCTTCCCSSSCSHHHHHHHHT
T ss_pred cceEEecccCCCCCccCHHHHHHHHcCCCcCccchhhHHHHHHHHHHhCCCCCHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 1567773 699999999999999999999999999998
Q ss_pred Hh
Q 002015 100 FA 101 (981)
Q Consensus 100 ~~ 101 (981)
++
T Consensus 162 ~~ 163 (164)
T 3nvw_A 162 FA 163 (164)
T ss_dssp TC
T ss_pred Hh
Confidence 75
No 14
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=99.90 E-value=8e-25 Score=217.22 Aligned_cols=94 Identities=32% Similarity=0.541 Sum_probs=84.4
Q ss_pred CeeEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------EeeecccccCC------------------
Q 002015 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------ 62 (981)
Q Consensus 10 ~~~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------ 62 (981)
+.+.|+|+|||+.+++ +++|+++|+|+||++++|+|+|.|| |+|||+++++|
T Consensus 2 ~~~~i~~~vNG~~~~v-~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl 80 (160)
T 3hrd_D 2 NKITINLNLNGEARSI-VTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGV 80 (160)
T ss_dssp CCEEEEEEETTEEEEE-EECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGT
T ss_pred CcceEEEEECCEEEEE-ecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCC
Confidence 3568999999999999 7999999999999999999999999 99999987642
Q ss_pred ----------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHHhhcc
Q 002015 63 ----------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (981)
Q Consensus 63 ----------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~~~~~ 104 (981)
.|||||+ +||++||+++|+|||||||||++|++|++++++.+
T Consensus 81 ~~~~~l~pvq~af~~~~~~QCGfCtpG~ims~~all~~~~~pt~~eI~~al~GNlCRCtgY~~I~~Av~~aa~~~ 155 (160)
T 3hrd_D 81 AEDGKPSLLQQCFLEAGAVQCGYCTPGMILTAKALLDKNPDPTDEEITVAMSGNLCRCTGYIKIHAAVRYAVERC 155 (160)
T ss_dssp SBTTBCCHHHHHHHHHTCCSSCSSHHHHHHHHHHHHTTCSSCCHHHHHHHHTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHcCCCcCCcchhhHHHHHHHHHHhCCCCCHHHHHHHHcCCCCCCCCcHHHHHHHHHHHHHh
Confidence 2577773 69999999999999999999999999999988654
No 15
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=99.88 E-value=2.4e-23 Score=207.94 Aligned_cols=94 Identities=33% Similarity=0.580 Sum_probs=83.4
Q ss_pred CeeEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------EeeecccccCC------------------
Q 002015 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------ 62 (981)
Q Consensus 10 ~~~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------ 62 (981)
+.+.|+|+|||+.+++ +++|+++|||+||++++|+|+|.|| |+|||+++++|
T Consensus 2 ~~~~i~~~vNG~~~~~-~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~TiEgL 80 (163)
T 1ffv_A 2 AKKIITVNVNGKAQEK-AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGL 80 (163)
T ss_dssp -CEEEEEEETTEEEEE-EECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGT
T ss_pred CCceEEEEECCEEEEE-ecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEECCcEecchHhhHHHhCCceEEEECCC
Confidence 3458999999999999 7999999999999999999999999 99999987642
Q ss_pred ----------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHHhhcc
Q 002015 63 ----------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (981)
Q Consensus 63 ----------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~~~~~ 104 (981)
.|||||+ +|+++||+++|+|||||||||++|++|++.+++..
T Consensus 81 ~~~~~l~pvq~a~~~~~~~QCG~CtpG~imsa~all~~~~~pt~~ei~~~l~gnlCRCtgY~~I~~Av~~~a~~~ 155 (163)
T 1ffv_A 81 ANKGVLHAVQEGFYKEHGLQCGFCTPGMLMRAYRFLQENPNPTEAEIRMGMTGNLCRCTGYQNIVKAVQYAARKL 155 (163)
T ss_dssp SBTTBCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHTTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHhCCccCccccHhHHHHHHHHHHcCCCCCHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHh
Confidence 1567773 79999999999999999999999999999987644
No 16
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=99.87 E-value=5e-23 Score=206.18 Aligned_cols=94 Identities=33% Similarity=0.587 Sum_probs=82.8
Q ss_pred CeeEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------EeeecccccCC------------------
Q 002015 10 TRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------ 62 (981)
Q Consensus 10 ~~~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------ 62 (981)
+.+.|+|+|||+.+++ +++|+++|||+||++++|+|+|.|| |+|||+++++|
T Consensus 2 ~~~~i~~~vNG~~~~~-~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~~~~~G~~V~TiEgL 80 (166)
T 1n62_A 2 AKAHIELTINGHPVEA-LVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGM 80 (166)
T ss_dssp -CEEEEEEETTEEEEE-EECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGS
T ss_pred CCceEEEEECCEEEEE-ecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEECCcEEechhhhHHHhCCceEEEeCCC
Confidence 3468999999999999 7999999999999999999999999 99999987542
Q ss_pred -----------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHHhhcc
Q 002015 63 -----------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (981)
Q Consensus 63 -----------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~~~~~ 104 (981)
.|||||+ +|+++||+++|+|||||||||++|++||+++++..
T Consensus 81 ~~~~~~~~pvq~a~~~~~~~QCG~CtpG~imsa~all~~~~~pt~~eI~~~l~gNlCRCtgY~~I~~Av~~~a~~~ 156 (166)
T 1n62_A 81 AAPDGTLSALQEGFRMMHGLQCGYCTPGMIMRSHRLLQENPSPTEAEIRFGIGGNLCRCTGYQNIVKAIQYAAAKI 156 (166)
T ss_dssp SCTTSCCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHTTTCCCSSSTTHHHHHHHHHHHHHH
T ss_pred CCcCCccCHHHHHHHHcCCccCCccchhHHHHHHHHHHcCCCCCHHHHHHHHcCCccCCCCCHHHHHHHHHHHHHh
Confidence 1567763 79999999999999999999999999999987643
No 17
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=99.81 E-value=1e-20 Score=189.35 Aligned_cols=93 Identities=34% Similarity=0.520 Sum_probs=82.5
Q ss_pred eeEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------EeeecccccCC-------------------
Q 002015 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP------------------- 62 (981)
Q Consensus 11 ~~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~dg~~~~~~------------------- 62 (981)
...|+|+|||+.+++ +++|+++||++||+.++++|+|.|| |+|||+++++|
T Consensus 2 ~~~i~~~vNG~~~~v-~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~v~TiEgL~ 80 (161)
T 1rm6_C 2 KNILRLTLNGRARED-LVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESLA 80 (161)
T ss_dssp EEEEEEEETTEEEEE-EEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGSS
T ss_pred CceEEEEECCEEEEE-ecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEECCcEEechHHHHHHhCCceEEEECCCC
Confidence 457999999999999 7999999999999999999999999 99999987642
Q ss_pred ---------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHHhhcc
Q 002015 63 ---------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (981)
Q Consensus 63 ---------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~~~~~ 104 (981)
.|+|||+ +|++++|+++|+|||||||||.+|++|++++++..
T Consensus 81 ~~~~~~p~q~a~~~~~~~qCG~Ctpg~im~a~~ll~~~~~pt~~~i~~~l~gnlcRCtgy~~i~~A~~~~~~~~ 154 (161)
T 1rm6_C 81 TQGTLSKLQAAFHEKLGTQCGFCTPGMIMASEALLRKNPSPSRDEIKAALAGNLCRCTGYVKIIKSVETAAAAR 154 (161)
T ss_dssp BTTBCCHHHHHHHHHTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHTTTCCCSSSCSHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHhCCCcCCCCchHHHHHHHHHHhcCCCCCHHHHHHHHcCCeECCCCCHHHHHHHHHHHHHH
Confidence 1456662 68999999999999999999999999999987644
No 18
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=99.78 E-value=4.1e-20 Score=214.69 Aligned_cols=89 Identities=37% Similarity=0.662 Sum_probs=80.4
Q ss_pred eEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------Eee----ecccccCC----------------
Q 002015 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLV----DAEKTHRP---------------- 62 (981)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~----dg~~~~~~---------------- 62 (981)
|.|+|+|||+.+++.+++|+++|+|+|| +++|||+|.|| |+| ||+++++|
T Consensus 1 ~~~~~~vNg~~~~~~~~~~~~~Ll~~Lr-~~~l~g~k~gC~~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiE 79 (462)
T 2w3s_A 1 MEIAFLLNGETRRVRIEDPTQSLLEWLR-AEGLTGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIE 79 (462)
T ss_dssp CEEEEEETTEEEEEECSCTTCBHHHHHH-HTTCTTSCCSCSSSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGG
T ss_pred CcEEEEECCEEEEEecCCCCCcHHHHHH-HcCCCccCCCCCCCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEEC
Confidence 3689999999999856999999999999 89999999999 999 99988654
Q ss_pred -------------------------CCCCCCC-------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHHh
Q 002015 63 -------------------------EPPPGFS-------KLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (981)
Q Consensus 63 -------------------------~~~pG~~-------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~~ 101 (981)
.|||||+ +||++||+++|+|||||||||++|++|++.++
T Consensus 80 gl~~~~~~~~~~q~a~~~~~~~QCG~CtpG~im~~~~ll~p~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 150 (462)
T 2w3s_A 80 GIAAPDGRLHPVQQAMIDHHGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCTGYAPILRAAEAAA 150 (462)
T ss_dssp GTSCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHTTCCCHHHHSTTCCCSSSCSHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHhCCCCCCCCcchHHHHHHHHHCCCHHHHHHHHcCCcccCCCcHHHHHHHHHHh
Confidence 1567764 69999999999999999999999999999987
No 19
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=99.70 E-value=7.7e-18 Score=170.14 Aligned_cols=95 Identities=28% Similarity=0.465 Sum_probs=82.4
Q ss_pred CCeeEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------EeeecccccCC-----------------
Q 002015 9 GTRHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVDAEKTHRP----------------- 62 (981)
Q Consensus 9 ~~~~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~dg~~~~~~----------------- 62 (981)
.+.+.|+|+|||+.+++ +++|+++||++||+.++++|+|.|| |+|||+++++|
T Consensus 7 ~~~m~i~~~ing~~~~~-~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~vdG~~v~sC~~~~~~~~G~~v~Tieg 85 (168)
T 1t3q_A 7 SQLMRISATINGKPRVF-YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEG 85 (168)
T ss_dssp CCCEEEEEEETTEEEEE-EECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGG
T ss_pred CCcceEEEEECCEEEEE-ecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEECCCEeechhhHHHHhCCCeEEEEcC
Confidence 35578999999999999 7999999999999989999999999 89999987542
Q ss_pred -----------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHHhhcc
Q 002015 63 -----------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFAADV 104 (981)
Q Consensus 63 -----------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~~~~~ 104 (981)
.|+|||+ +|++++|+++|+|||||||+|.+|++|++.+++..
T Consensus 86 l~~~~~~~~~q~a~~~~~~~qCG~C~pg~i~~a~~ll~~~~~p~~~~i~~~l~gnlcRCt~y~~~v~A~~~~~~~~ 161 (168)
T 1t3q_A 86 LSQGEKLNALQDSFRRHHALQCGFCTAGMLATARSILAENPAPSRDEVREVMSGNLCRCTGYETIIDAITDPAVAE 161 (168)
T ss_dssp TCCSSSCCHHHHHHHHTTCCSSCSSHHHHHHHHHHHHHHCSSCCHHHHHHHGGGSCCSSSCSHHHHHHHTCHHHHH
T ss_pred CCCccccCHHHHHHHHhCCCcCCCchHHHHHHHHHHHhcCCCCCHHHHHHHHcCCcccCCCchHHHHHHHHHHHHh
Confidence 1456652 58999999999999999999999999998877543
No 20
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=91.94 E-value=0.16 Score=45.35 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=33.1
Q ss_pred EEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+|++||+.+++ +++++++|++.||+. |+.|++.+|
T Consensus 2 ~v~i~~~g~~~~~-~~~~g~tll~a~~~~-gi~gi~~~C 38 (93)
T 1l5p_A 2 TITAVKGGVKKQL-KFEDDQTLFTVLTEA-GLMSADDTC 38 (93)
T ss_dssp EEEEEETTEEEEE-ECCTTEEHHHHHHTT-TSSCCTTSC
T ss_pred eEEEEeCCcEEEE-EECCCChHHHHHHHc-CCCcCCcCC
Confidence 5789999998888 699999999999986 888888888
No 21
>1rm6_A 4-hydroxybenzoyl-COA reductase alpha subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.41.1.1 d.133.1.1 PDB: 1sb3_A*
Probab=91.24 E-value=5.2 Score=49.22 Aligned_cols=187 Identities=17% Similarity=0.169 Sum_probs=109.9
Q ss_pred CCCCeeEEEECCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCceEEEEe------ccCCCCCCCCCcccchHHHHHH
Q 002015 326 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAIKAMPVATACA 394 (981)
Q Consensus 326 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~~~~~~~~~aA 394 (981)
++..++....+.||+++|+++++.. ..+.+.+|+.||+|.++|+|.. |+-+|.+|++.... .--++-
T Consensus 457 ~~~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~Lgip~e~V~v~~~DT~~~p~~~~t~aSr~t~~--~G~Av~ 534 (769)
T 1rm6_A 457 EPHATVNLKLDFDGGITLLTGAADIGQGSNTMASQVAAEVLGVRLSRIRVISADSALTPKDNGSYSSRVTFM--VGNASI 534 (769)
T ss_dssp CCSEEEEEEECTTCCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTTCHHHH--HHHHHH
T ss_pred CCCccEEEEEeCCCeEEEEECCccCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCCccchHHHH--HHHHHH
Confidence 3556788888889999999988544 3457778999999999999985 55677888885321 111111
Q ss_pred HHHH------------hCCCc---EE---------------EE--------------------cCHHHHHhhcCC-----
Q 002015 395 LAAY------------KLCRP---VR---------------IY--------------------VNRKTDMVMAGG----- 419 (981)
Q Consensus 395 laA~------------~~gRP---Vk---------------l~--------------------~sR~E~~~~~~~----- 419 (981)
.+|. .++.+ +. +. +.-...+...+.
T Consensus 535 ~Aa~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~ 614 (769)
T 1rm6_A 535 SAAEELKGVLVKAAAKKLDAREEDIEVIDEMFMVSGSQDPGLSFQEVVKAAMVDSGTITVKGTYTCPTEFQGDKKIRGSA 614 (769)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCGGGEEEETTEEEETTCSSCCEEHHHHHHHHHTTTCSEEEEEEECCCGGGSCCTTCGGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHeEEeCCEEEEccCCCCccCHHHHHHhhhhcccccccccceeccccccccccccccc
Confidence 1222 22210 00 00 100000100010
Q ss_pred ---CC--ce-EEEEEEEeCCC-CcEEEEEEEEEEeCCCCCCCCCchh--------H----hh------------hccCCC
Q 002015 420 ---RH--PM-KIEYNVGFKSN-GKITALQLNILIDAGQYPDVSPNIP--------A----YM------------IGALKK 468 (981)
Q Consensus 420 ---R~--~~-~~~~r~g~d~d-G~i~a~~~~~~~d~Gay~~~~~~~~--------~----~~------------~~~~g~ 468 (981)
.. ++ ..-.++.+|.+ |++.=.++....|+|--.+-. ... . ++ .....-
T Consensus 615 ~~~~~~~~~ga~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~-~~~gQieGG~~qGiG~aL~Ee~~~d~G~~~~~~~~d 693 (769)
T 1rm6_A 615 IGATMGFCYAAQVVEASVDEITGKVTAHKVWVAVDVGKALNPL-AVEGQTQGGVWMGMGQALSEETVYDNGRMVHGNILD 693 (769)
T ss_dssp TTCCSCEEEEEEEEEEEECTTTCCEEEEEEEEEEECSSCSSHH-HHHHHHHHHHHHHHHHHHTCCCCEETTEESCCSTTT
T ss_pred cCCCCCcceEEEEEEEEEECCCceEEEEEEEEEEECCccCCHH-HHHHHHHhHHHHHHHHHhcceeEecCCEeCCCChhh
Confidence 11 11 24578888875 999999999999999764310 000 0 00 011234
Q ss_pred cccccE----EEEEEEeecCCCccccc--CCCChhHHHHHHHHHHHHHHHHcCC
Q 002015 469 YDWGAL----HFDIKVCRTNLPSRTAM--RAPGEVQGSFIAEAVIEHVASTLSM 516 (981)
Q Consensus 469 Y~ipn~----~~~~~~v~TN~~p~ga~--RG~G~pq~~fa~E~~mD~lA~~lG~ 516 (981)
|.+|.. .++...+.+..+ .++| +|.|-+-..-+.=.+.+-+.+.+|.
T Consensus 694 Y~ip~~~D~P~i~v~~ve~~~~-~~p~GaKGvGE~~~~~~~~AIaNAv~~A~G~ 746 (769)
T 1rm6_A 694 YRVPTIVESPDIEVIIVESMDP-NGPFGAKEASEGMLAGFLPAIHEAVYEAVGV 746 (769)
T ss_dssp SCCCCTTTCCEEEEEEECCCCT-TSGGGCCCCSSTTTTTHHHHHHHHHHHHHSC
T ss_pred ccCCCcccCCCEEEEEEeCCCC-CCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 655432 466777777655 5676 7988877655555677777777775
No 22
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=90.14 E-value=5.1 Score=50.25 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=112.4
Q ss_pred CCCCeeEEEECCCCeEEEEeCCCCh-----HHHHHHHHHHh---CCCCceEEEEe------ccCCCCCCCCCcccchHHH
Q 002015 326 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCL---GIPEHNVRVIT------RRVGGGFGGKAIKAMPVAT 391 (981)
Q Consensus 326 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~L---glp~~kVrV~~------~~vGGgFG~K~~~~~~~~~ 391 (981)
+...++....+.||.++|+++++.. ..+.+.+|+.| |+|.++|+|.. |+-+|.+|++.... .--
T Consensus 631 ~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gSr~t~~--~G~ 708 (907)
T 1dgj_A 631 PDTSEAWVELNDDGSVTLGNSWEDHGQGADAGSLGTAHEALRPLGITPENIHLVMNDTSKTPNSGPAGGSRSQVV--TGN 708 (907)
T ss_dssp SCEEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHTGGGTCCGGGEEEEESBTTTSCCCCCSCTTCTTTH--HHH
T ss_pred CCCccEEEEEeCCCeEEEEECCcCCCccHHHHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccchHHHH--HHH
Confidence 3456778888889999999998544 34567788999 99999999985 55678899997532 222
Q ss_pred HHHHHHHhCCC---cEE-EEcCHHHHHhh--------------------cCCCCc-----e-EEEEEEEeCC-CCcEEEE
Q 002015 392 ACALAAYKLCR---PVR-IYVNRKTDMVM--------------------AGGRHP-----M-KIEYNVGFKS-NGKITAL 440 (981)
Q Consensus 392 ~aAlaA~~~gR---PVk-l~~sR~E~~~~--------------------~~~R~~-----~-~~~~r~g~d~-dG~i~a~ 440 (981)
++-.||.++++ ++. -.+ ..|++.. +...++ + ..-.++.+|. .|++.=.
T Consensus 709 Av~~Aa~~l~~~l~~~aa~~l-~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~aEVeVD~~TG~v~V~ 787 (907)
T 1dgj_A 709 AIRVACEMLIEGMRKPGGGFF-TPAEMKAEGRPMRYDGKWTAPAKDCDAKGQGSPFACYMYGLFLTEVAVEVATGKATVE 787 (907)
T ss_dssp HHHHHHHHHHHHTBCSSSSBC-CHHHHHHTTCCCEEEEEEECSCBCCCTTSCSBCCSEEEEEEEEEEEEEETTTTEEEEE
T ss_pred HHHHHHHHHHHHHHHHhhhcC-CHHHHhhCCeEEEecceeeccCCCcCCCCCCCCCCCCceEEEEEEEEEECCCCcEEEE
Confidence 22233333311 110 000 1122210 001021 1 2346778887 4999999
Q ss_pred EEEEEEeCCCCCCCCCchh--------H----hh---------hccCCCcccccE----E-EEEEEeecCCCccccc--C
Q 002015 441 QLNILIDAGQYPDVSPNIP--------A----YM---------IGALKKYDWGAL----H-FDIKVCRTNLPSRTAM--R 492 (981)
Q Consensus 441 ~~~~~~d~Gay~~~~~~~~--------~----~~---------~~~~g~Y~ipn~----~-~~~~~v~TN~~p~ga~--R 492 (981)
++....|+|--.+-. ... . ++ .....-|.+|.. . ++...+.+..+ .++| +
T Consensus 788 r~~~v~D~G~~iNP~-~~~gQieGG~~qGiG~aL~Ee~~G~~~~~~~~dY~ip~~~D~P~~i~v~~~e~~~~-~~p~GaK 865 (907)
T 1dgj_A 788 KMVCVADIGKICNKL-VVDGQIYGGLAQGVGLALSEDYEDLKKHSTMGGAGIPSIKMIPDDIEIVYVETPRK-DGPFGAS 865 (907)
T ss_dssp EEEEEEECBSCSCHH-HHHHHHHHHHHHHHHHHHTCCCCSTTTTSSTTTTTCCCGGGSCSCEEEEECCCCCT-TSGGGBC
T ss_pred EEEEEEECCccCCHH-HHHHHHHHHHHHHHHHHHHHHhcCeeCCCChhhCcCCChHHCCCcEEEEEecCCCC-CCCCCCc
Confidence 999999999764310 000 0 00 012234655543 2 56667777554 5777 7
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCC
Q 002015 493 APGEVQGSFIAEAVIEHVASTLSM 516 (981)
Q Consensus 493 G~G~pq~~fa~E~~mD~lA~~lG~ 516 (981)
|.|.+...-+.=.+.+.+.+.+|.
T Consensus 866 GvGE~~~~~~~~AIaNAv~~A~G~ 889 (907)
T 1dgj_A 866 GVGEMPLTAPHAAIINGIYNACGA 889 (907)
T ss_dssp CCTTGGGSSHHHHHHHHHHHHHSC
T ss_pred ccCccccchHHHHHHHHHHHhhCC
Confidence 999887665556677777777775
No 23
>1t3q_B Quinoline 2-oxidoreductase large subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.41.1.1 d.133.1.1
Probab=89.76 E-value=5.2 Score=49.42 Aligned_cols=184 Identities=16% Similarity=0.100 Sum_probs=106.8
Q ss_pred CCeeEEEECCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCceEEEEe-----ccCCCCCCCCCcccchHHHHHHHHH
Q 002015 328 TQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT-----RRVGGGFGGKAIKAMPVATACALAA 397 (981)
Q Consensus 328 p~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~-----~~vGGgFG~K~~~~~~~~~~aAlaA 397 (981)
..++....+.||+++|+++++.. ..+.+.+|+.||+|.++|+|.. |+-+|.+|++.... .--++-.||
T Consensus 484 ~~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~~~V~v~~~DT~~p~~~~t~aSr~t~~--~G~Av~~Aa 561 (788)
T 1t3q_B 484 HDSATVRIDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVI--GAGSIGRAA 561 (788)
T ss_dssp CBEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEEECSBTTSCCBCCSCTTCHHHH--HHHHHHHHH
T ss_pred cccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCccchHHHH--HHHHHHHHH
Confidence 35677888889999999988544 3457778999999999999996 55677888886421 112222222
Q ss_pred HhCCC-----------------------------cEE-EEcCHH--------HHHhh------------cCCCC--ce-E
Q 002015 398 YKLCR-----------------------------PVR-IYVNRK--------TDMVM------------AGGRH--PM-K 424 (981)
Q Consensus 398 ~~~gR-----------------------------PVk-l~~sR~--------E~~~~------------~~~R~--~~-~ 424 (981)
.++++ |-| +.|..- .++.. ..... ++ .
T Consensus 562 ~~l~~~l~~~aa~~l~~~~~~l~~~~g~~~~~~~~~~~~~~~el~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ga 641 (788)
T 1t3q_B 562 SIVRERVKQLAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGG 641 (788)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEEETTEEEETTEEEEEEEHHHHHHHHHHCGGGCCTTCCCCCEEEEECCCSSCEEEEEE
T ss_pred HHHHHHHHHHhHhhhCCCHHHEEEeCCEEEEccCCCCcccHHHHHHHHhhcCcccccCccCCcccccccCCCCCCcceEE
Confidence 22211 000 111000 00100 00000 11 2
Q ss_pred EEEEEEeCCC-CcEEEEEEEEEEeCCCCCCCC----Cc-------hhHhh-------------hccCCCcccccE----E
Q 002015 425 IEYNVGFKSN-GKITALQLNILIDAGQYPDVS----PN-------IPAYM-------------IGALKKYDWGAL----H 475 (981)
Q Consensus 425 ~~~r~g~d~d-G~i~a~~~~~~~d~Gay~~~~----~~-------~~~~~-------------~~~~g~Y~ipn~----~ 475 (981)
+-.++.+|.+ |++.=.++....|+|--.+-. .+ +..++ .....-|.+|.. .
T Consensus 642 ~~aeVeVD~~TG~v~V~r~~~v~D~G~~iNP~~~~gQieGG~~qGiG~aL~Ee~~~d~~G~~~~~~~~dY~ip~~~D~P~ 721 (788)
T 1t3q_B 642 HAAIVEIDASTYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTTLMDYLIPTTLDVPD 721 (788)
T ss_dssp EEEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCBCBCTTSCBCCCSTTTSCCCCTTTCCC
T ss_pred EEEEEEEECCCceEEEEEEEEEEECCccCCHHHHHHHHHHhHHHHHHHHhcceeEECCCCCCCCCChhhccCCCcccCCC
Confidence 3467778875 999999999999999764310 00 00000 011233644432 3
Q ss_pred EEEEEeecCCCccccc--CCCChhHHHHHHHHHHHHHHHHc
Q 002015 476 FDIKVCRTNLPSRTAM--RAPGEVQGSFIAEAVIEHVASTL 514 (981)
Q Consensus 476 ~~~~~v~TN~~p~ga~--RG~G~pq~~fa~E~~mD~lA~~l 514 (981)
++...+.+..+ .++| +|.|-+-..-+.=.+.+-+.+.+
T Consensus 722 i~v~~ve~~~~-~~p~GaKGvGE~~~~~~a~AiaNAI~~A~ 761 (788)
T 1t3q_B 722 IRIRHLETPSP-LVPGGIKGMGESAMISAPAAVVAAVNDAL 761 (788)
T ss_dssp EEEEECCCCCT-TSGGGBCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCC-CCCCCCccccccchhhHHHHHHHHHHHHH
Confidence 55666776554 5676 79999887776667777777777
No 24
>1n62_B Carbon monoxide dehydrogenase large chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.41.1.1 d.133.1.1 PDB: 1n5w_B* 1n61_B* 1n60_B* 1n63_B* 1zxi_B*
Probab=89.22 E-value=11 Score=46.73 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=105.9
Q ss_pred CeeEEEECCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCceEEEEe------ccCCCCCCCCCcccchHHHHHHHHH
Q 002015 329 QTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAIKAMPVATACALAA 397 (981)
Q Consensus 329 ~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~~~~~~~~~aAlaA 397 (981)
.++....+.||+++|+++++.. ..+.+.+|+.||+|.++|+|.. |+-+|.+|++..... --++-.||
T Consensus 507 ~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aSr~t~~~--G~Av~~Aa 584 (809)
T 1n62_B 507 DSAEIRIHPTGSVIARMGTKSQGQGHETTYAQIIATELGIPADDIMIEEGNTDTAPYGLGTYGSRSTPTA--GAATAVAA 584 (809)
T ss_dssp EEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTTCTTTTH--HHHHHHHH
T ss_pred ccEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEecCCCCCCCCCCCcccchHHHHH--HHHHHHHH
Confidence 5677788889999999988544 3456778899999999999985 455788999875332 22222233
Q ss_pred HhCCC-----------------------------cE-EEEcCHHHHHhhc-------------------C--CCCce-EE
Q 002015 398 YKLCR-----------------------------PV-RIYVNRKTDMVMA-------------------G--GRHPM-KI 425 (981)
Q Consensus 398 ~~~gR-----------------------------PV-kl~~sR~E~~~~~-------------------~--~R~~~-~~ 425 (981)
.++++ |= ++.| +|-.... . ...++ ..
T Consensus 585 ~~l~~~l~~~aa~~l~~~~~~l~~~~g~v~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ga~ 662 (809)
T 1n62_B 585 RKIKAKAQMIAAHMLEVHEGDLEWDVDRFRVKGLPEKFKTM--KELAWASYNSPPPNLEPGLEAVNYYDPPNMTYPFGAY 662 (809)
T ss_dssp HHHHHHHHHHHHHHHTSCGGGEEECSSEEEETTEEEEEEEH--HHHHHHHHHSCCTTSCSSCEEEEEECCSSCBCCEEEE
T ss_pred HHHHHHHHHHHHHHhCCCHHHEEEeCCEEEEccCCCCcccH--HHHHHHHhhccCccccccceeeeeccCCCCccceeEE
Confidence 33210 00 0111 1111000 0 00011 23
Q ss_pred EEEEEeCC-CCcEEEEEEEEEEeCCCCCCCC----Cc-------hhHhh-------------hccCCCcccccE----EE
Q 002015 426 EYNVGFKS-NGKITALQLNILIDAGQYPDVS----PN-------IPAYM-------------IGALKKYDWGAL----HF 476 (981)
Q Consensus 426 ~~r~g~d~-dG~i~a~~~~~~~d~Gay~~~~----~~-------~~~~~-------------~~~~g~Y~ipn~----~~ 476 (981)
-.++-+|. .|++.=.++....|+|--.+-. .+ +..++ .....-|.+|.. .+
T Consensus 663 ~aeVeVD~~TG~v~V~r~~~v~D~G~viNP~~~~gQieGG~~qGlG~aL~Ee~~~d~~G~~~~~~~~dY~ip~~~D~P~i 742 (809)
T 1n62_B 663 FCIMDIDVDTGVAKTRRFYALDDCGTRINPMIIEGQVHGGLTEAFAVAMGQEIRYDEQGNVLGASFMDFFLPTAVETPKW 742 (809)
T ss_dssp EEEEEEETTTCCEEEEEEEEEEECBSCSCHHHHHHHHHHHHHHHHHHHHTCCCEECTTCCEESCSTTTSCCCCTTTSCCC
T ss_pred EEEEEEECCcCeEEEEEEEEEEECCccCCHHHHHHHHHHHHHHHHHHHHhCceEECCCCCCCCCChhhccCCChhhCCCe
Confidence 46777876 7999999999999999764310 00 00000 011233644432 34
Q ss_pred EEEEeecCCCccccc--CCCChhHHHHHHHHHHHHHHHHc
Q 002015 477 DIKVCRTNLPSRTAM--RAPGEVQGSFIAEAVIEHVASTL 514 (981)
Q Consensus 477 ~~~~v~TN~~p~ga~--RG~G~pq~~fa~E~~mD~lA~~l 514 (981)
+...+.+.. +.++| +|.|.+...-+.=.+.+-+.+.+
T Consensus 743 ~v~~ve~~~-~~~p~GaKGvGE~~~~~~apAiaNAI~~A~ 781 (809)
T 1n62_B 743 ETDYTVTPS-PHHPIGAKGVGESPHVGGVPCFSNAVNDAY 781 (809)
T ss_dssp EEEECCCCC-TTSTTSBCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCC-CCCCCCCcccCCcccchHHHHHHHHHHHHH
Confidence 555565542 35777 89999887666666677777777
No 25
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=86.10 E-value=0.59 Score=39.99 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=36.7
Q ss_pred eEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCcEeeecccccC
Q 002015 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGCVLVDAEKTHR 61 (981)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gCvl~dg~~~~~ 61 (981)
|+|+++|||+.....+++++.|+.|+|++ |++..-.. -|++||+.+..
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~-Lgl~~~~V-vV~vNG~~v~~ 48 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVRA-VDLSPHEV-TVLVDGRPVPE 48 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHHT-TCCCSSCC-CEECCCCCCCT
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHHH-cCCCcceE-EEEECCEECCH
Confidence 57899999986322267889999999974 78865554 59999998764
No 26
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=86.09 E-value=6.6 Score=51.36 Aligned_cols=89 Identities=38% Similarity=0.737 Sum_probs=76.4
Q ss_pred eEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------Eee---e---cc----cccCC----------
Q 002015 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLV---D---AE----KTHRP---------- 62 (981)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~---d---g~----~~~~~---------- 62 (981)
.+|.|+|||+.+++++++|++|||+|||++++|||||+|| |+| | ++ +|++|
T Consensus 8 ~~l~F~vNG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~~~~~~~~~~~~~avNsCl~~l~~~~g~ 87 (1335)
T 3zyv_A 8 DELIFFVNGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMISRYDPISKRISHFSATACLVPICSLHGA 87 (1335)
T ss_dssp CCEEEEETTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTC
T ss_pred CeEEEEECCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEeeEeCCCCeEEEEEhhHHHHHHHHhcCC
Confidence 4799999999999989999999999999999999999999 655 2 22 23322
Q ss_pred -------------------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHH
Q 002015 63 -------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSF 100 (981)
Q Consensus 63 -------------------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~ 100 (981)
.|||||+ .|+++||+++|+|||||||||+||++|++++
T Consensus 88 ~v~TvEglg~~~~~lHpvQ~~~a~~hgsQCGFCTPGfVMSmyall~~~~~pt~~~ie~al~GNLCRCTGYRPIldA~ksf 167 (1335)
T 3zyv_A 88 AVTTVEGIGSTKTRIHPVQERIAKGHGTQCGFCTPGMVMSIYTLLRNHPEPSTEQIMETLGGNLCRCTGYRPIVESAKSF 167 (1335)
T ss_dssp EEECHHHHCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHHHHTTCCCSSSCSHHHHHHHHTT
T ss_pred EEEeeCCCCCCCCCCCHHHHHHHhcCCCcCCCCCcHHHHHHHHHHHcCCCCCHHHHHHHhCCcccccCCCHHHHHHHHHh
Confidence 2788884 6999999999999999999999999999764
No 27
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=85.85 E-value=4.9 Score=50.41 Aligned_cols=187 Identities=15% Similarity=0.132 Sum_probs=111.0
Q ss_pred CCCCeeEEEECCCCeEEEEeCCCCh-----HHHHHHHHHHh---CCCCceEEEEe------ccCCCCCCCCCcccchHHH
Q 002015 326 METQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCL---GIPEHNVRVIT------RRVGGGFGGKAIKAMPVAT 391 (981)
Q Consensus 326 mEp~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~L---glp~~kVrV~~------~~vGGgFG~K~~~~~~~~~ 391 (981)
+...++....+.||.++|+++++.. ..+.+.+|+.| |+|.++|+|.. |+-+|.+|++.... .--
T Consensus 629 ~~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~L~~~Gip~~~V~v~~~DT~~~p~~~~t~gSr~t~~--~G~ 706 (907)
T 1vlb_A 629 PDASEAWAELNADGTITVHTAWEDHGQGADIGCVGTAHEALRPMGVAPEKIKFTWPNTATTPNSGPSGGSRQQVM--TGN 706 (907)
T ss_dssp TCEEEEEEEECTTSCEEEECCCCCSSSCHHHHHHHHHHHHHGGGTCCGGGEEECCCBTTTSCCCCCSCTTCHHHH--HHH
T ss_pred CCCccEEEEEeCCCeEEEEECCccCCCCHHHHHHHHHHHHHhhcCCCHHHEEEecCCCCCCCCCCCCccchHHHH--HHH
Confidence 3456778888889999999988544 34567788999 99999999985 55678899886422 222
Q ss_pred HHHHHHHhCCC---c---------------------EEEEcCHHHHHhh-cCC-C--C--ce-EEEEEEEeCC-CCcEEE
Q 002015 392 ACALAAYKLCR---P---------------------VRIYVNRKTDMVM-AGG-R--H--PM-KIEYNVGFKS-NGKITA 439 (981)
Q Consensus 392 ~aAlaA~~~gR---P---------------------Vkl~~sR~E~~~~-~~~-R--~--~~-~~~~r~g~d~-dG~i~a 439 (981)
++-.||.++++ + ..|.-.....+.. +.. . . ++ ..-.++.+|. .|++.=
T Consensus 707 Av~~Aa~~l~~~l~~~aa~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ga~~aEVeVD~~TG~v~V 786 (907)
T 1vlb_A 707 AIRVACENLLKACEKPGGGYYTYDELKAADKPTKITGNWTASGATHCDAVTGLGKPFVVYMYGVFMAEVTVDVATGQTTV 786 (907)
T ss_dssp HHHHHHHHHHHHHBCTTSSBCCHHHHHHTTCCCEEEEEEECTTCBCCCTTTCCSBCCSCEEEEEEEEEEEEETTTCCEEE
T ss_pred HHHHHHHHHHHHHHHHhhccCCHHHHHhhcccccccceecCCCccccccccCCCCCCCCcceEEEEEEEEEECCCCcEEE
Confidence 22223333311 1 1111000000000 011 1 1 11 2346788887 499999
Q ss_pred EEEEEEEeCCCCCCCCCchh--------H----hh---------hccCCCcccccE----E-EEEEEeecCCCccccc--
Q 002015 440 LQLNILIDAGQYPDVSPNIP--------A----YM---------IGALKKYDWGAL----H-FDIKVCRTNLPSRTAM-- 491 (981)
Q Consensus 440 ~~~~~~~d~Gay~~~~~~~~--------~----~~---------~~~~g~Y~ipn~----~-~~~~~v~TN~~p~ga~-- 491 (981)
.++....|+|--.+-. ... . ++ .....-|.+|.. . ++...+.+..+ .++|
T Consensus 787 ~r~~~v~D~G~viNP~-~~~gQieGG~~qGlG~aL~Ee~~G~~~~~~~~dY~ip~~~D~P~~i~v~~ve~~~~-~~p~Ga 864 (907)
T 1vlb_A 787 DGMTLMADLGSLCNQL-ATDGQIYGGLAQGIGLALSEDFEDIKKHATLVGAGFPFIKQIPDKLDIVYVNHPRP-DGPFGA 864 (907)
T ss_dssp EEEEEEEECSSCSCHH-HHHHHHHHHHHHHHHHHHTCCCCSTTTSSSTTTTTCCCGGGSCSCEEEEECCCCCT-TSGGGC
T ss_pred EEEEEEEECCccCCHH-HHHHHHHHHHHHHHHHHHHHHhcCeeCCCChhhCcCCChHhCCCcEEEEEecCCCC-CCCCcC
Confidence 9999999999764310 000 0 00 011234655542 2 56667777555 5777
Q ss_pred CCCChhHHHHHHHHHHHHHHHHcCC
Q 002015 492 RAPGEVQGSFIAEAVIEHVASTLSM 516 (981)
Q Consensus 492 RG~G~pq~~fa~E~~mD~lA~~lG~ 516 (981)
+|.|.+...-+.=.+.+.+.+.+|.
T Consensus 865 KGvGE~~~~~~~~AIaNAv~~A~G~ 889 (907)
T 1vlb_A 865 SGVGELPLTSPHAAIINAIKSATGV 889 (907)
T ss_dssp CCCTTGGGSSHHHHHHHHHHHHHSC
T ss_pred ccccccccchHHHHHHHHHHHhhCC
Confidence 7999887665556677777777775
No 28
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=85.83 E-value=0.43 Score=51.54 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=33.3
Q ss_pred EEEEeccCCC-CCchHHHHhc---CCC-CcCCCcCc---------EeeecccccCC
Q 002015 21 EKFEVSSVDP-STTLLEFLRY---HTR-FKSVKLGC---------VLVDAEKTHRP 62 (981)
Q Consensus 21 ~~~~~~~~~~-~~~L~~~LR~---~~~-l~g~k~gC---------vl~dg~~~~~~ 62 (981)
+.+++ ++++ +++|||+||+ +++ .++.|.|| |.|||+++.+|
T Consensus 55 ~~~~v-~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~~laC 109 (282)
T 3vr8_B 55 QKFDV-DLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLAC 109 (282)
T ss_pred EEEEE-EeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEEecch
Confidence 46777 6888 8999999996 344 37899988 99999998875
No 29
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=85.10 E-value=1.1 Score=40.05 Aligned_cols=38 Identities=8% Similarity=0.215 Sum_probs=30.7
Q ss_pred eeEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 11 RHSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 11 ~~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
..+|+|.+||...++ +++++++||+.|++. |+ .++.+|
T Consensus 2 ~~~v~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi-~i~~~C 39 (98)
T 1iue_A 2 FYNITLRTNDGEKKI-ECNEDEYILDASERQ-NV-ELPYSC 39 (98)
T ss_dssp EEEEEEEETTEEEEE-EEETTSCHHHHHHHT-TC-CCCCSS
T ss_pred cEEEEEEeCCCeEEE-EeCCCCcHHHHHHHc-CC-CCCCCC
Confidence 357899999965666 578999999999985 77 688888
No 30
>3hrd_B Nicotinate dehydrogenase medium molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=84.20 E-value=2.3 Score=46.88 Aligned_cols=59 Identities=14% Similarity=0.048 Sum_probs=46.1
Q ss_pred CCCCeeEEEECCCCeEEEEeCCC----ChH-HHHHHHHHHhCCCCceEEEEe------ccCCCCCCCCCc
Q 002015 326 METQTALAVPDEDNCLVVYSSIQ----CPE-YAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAI 384 (981)
Q Consensus 326 mEp~~avA~~~~dg~l~V~~stQ----~p~-~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~ 384 (981)
..+.++....+.||+++|+++.+ ..+ .+.+.+|+.||+|.++|+|.. |+-+|.+|++..
T Consensus 21 ~~~~~a~v~i~~DG~V~v~~g~~emGQG~~T~laQIaAe~Lgi~~e~V~v~~~DT~~~p~~~~T~gSrst 90 (330)
T 3hrd_B 21 PNPAAAFVEIHGDGSANVMFGAADIGQGSGTAMAQIAAEELGLDYEKIHVTWGDTMVTPDGGATSASRQT 90 (330)
T ss_dssp CCCEEEEEEECTTSCEEEEECCCCSSSCHHHHHHHHHHHHHTCCGGGEEEEESBTTTSCCCCCSCTTCHH
T ss_pred CCcceEEEEEeCCCeEEEEECCCCCCCCHHHHHHHHHHHHhCCCHHHEEEEecCCCCCCCCCCCcchHhH
Confidence 45667778888899999999865 443 446778899999999999985 455788888864
No 31
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=84.04 E-value=1.4 Score=39.47 Aligned_cols=37 Identities=11% Similarity=0.185 Sum_probs=29.4
Q ss_pred eEEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 12 HSVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
.+|+|..|+...++ +++++++||+.|++. |+. ++.+|
T Consensus 3 ~~v~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 39 (97)
T 1a70_A 3 YKVTLVTPTGNVEF-QCPDDVYILDAAEEE-GID-LPYSC 39 (97)
T ss_dssp EEEEEEETTEEEEE-EEETTSCHHHHHHHT-TCC-CCCSS
T ss_pred EEEEEEeCCceEEE-EeCCCCcHHHHHHHc-CCC-cccCC
Confidence 47888877755666 578999999999985 775 78887
No 32
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=83.96 E-value=0.7 Score=41.83 Aligned_cols=38 Identities=13% Similarity=0.350 Sum_probs=30.6
Q ss_pred eeEEEEE-ECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 11 RHSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 11 ~~~i~~~-vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
..+|+|. .||+.+++ +++++++||+.||+. |+. ++.+|
T Consensus 3 ~~~v~~~~~~g~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 41 (103)
T 2wlb_A 3 GIKVFFVTPEGREIMI-EGNEGDSILDLAHAN-NID-LEGAC 41 (103)
T ss_dssp CEEEEEECTTCCEEEE-EECTTCBHHHHHHHT-TCC-CCCTT
T ss_pred ceEEEEEeCCCCEEEE-EECCCCHHHHHHHHc-CCC-cCcCC
Confidence 4578999 99977777 588999999999985 765 66666
No 33
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=83.94 E-value=0.42 Score=50.12 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=34.9
Q ss_pred EEEEeccCCC--CCchHHHHhcCC---CCcCCCcCc---------EeeecccccCCC
Q 002015 21 EKFEVSSVDP--STTLLEFLRYHT---RFKSVKLGC---------VLVDAEKTHRPE 63 (981)
Q Consensus 21 ~~~~~~~~~~--~~~L~~~LR~~~---~l~g~k~gC---------vl~dg~~~~~~~ 63 (981)
+.+++ ++++ ++|||++||+.. ...+++.|| |.|||+++.+|.
T Consensus 21 ~~~~v-~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~ 76 (238)
T 2wdq_B 21 QDYTL-EADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACI 76 (238)
T ss_dssp EEEEE-ECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEETTEEEEGGG
T ss_pred EEEEe-ecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEECCEEEcccc
Confidence 45677 6888 999999999865 677999998 899999987654
No 34
>3hrd_A Nicotinate dehydrogenase large molybdopterin subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=82.59 E-value=1.9 Score=49.42 Aligned_cols=59 Identities=20% Similarity=0.099 Sum_probs=45.5
Q ss_pred CceEEEEEeeCCcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCCcccCCCCCccchhhhh
Q 002015 595 STPGKVSILSDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTLSVIQGGLTAGSTKSEA 672 (981)
Q Consensus 595 ~~~a~v~l~~DG~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~~~p~~~gt~aSr~t~~ 672 (981)
+..+....++||.++|.++++. . +...+.+|+.||+ |+++|+|+. |+-+|.+|++....
T Consensus 188 p~~~~A~~~~~g~l~v~~stQ~----p-~~~r~~vA~~Lgl--------p~~~VrV~~------~~vGGgFG~K~~~~ 246 (425)
T 3hrd_A 188 PDAGVSYYDNEGMLTVVVSTQN----P-HYDRGEVAGMLAL--------PNSKVRIIQ------ATTGGGFGGKLDLS 246 (425)
T ss_dssp CCEEEEEECTTCCEEEEECCSC----H-HHHHHHHHHHTTC--------CGGGEEEEE------CBCCCCTTTTSSCS
T ss_pred CceEEEEECCCCeEEEEECCCC----H-HHHHHHHHHHhCC--------ChhhEEEEe------CCCCCCCCCCcccC
Confidence 4667777777999999997543 2 2456678999999 999999984 56678899887643
No 35
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=78.81 E-value=1.2 Score=39.75 Aligned_cols=36 Identities=8% Similarity=0.154 Sum_probs=29.2
Q ss_pred EEEEEEC---CEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFAVN---GEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~vN---g~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
.+++++| |...++ +++++++||+.||+. |+. ++.+|
T Consensus 4 ~~~v~~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 42 (98)
T 1jq4_A 4 VHTITAVTEDGESLRF-ECRSDEDVITAALRQ-NIF-LMSSC 42 (98)
T ss_dssp EEEEEEEETTTEEEEE-EEESCCTHHHHHHHH-TCC-CCCSC
T ss_pred cEEEEEEecCCCcEEE-EeCCCChHHHHHHHc-CCC-CcCCC
Confidence 5677888 777777 688999999999975 775 78887
No 36
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=78.63 E-value=3.3 Score=36.61 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=28.4
Q ss_pred EEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+|..|+...++ +++++++||+.|++. |+ .++.+|
T Consensus 2 ~v~~~~~~g~~~~-~~~~g~tlL~a~~~~-gi-~i~~~C 37 (94)
T 1awd_A 2 KVTLKTPSGEETI-ECPEDTYILDAAEEA-GL-DLPYSC 37 (94)
T ss_dssp EEEEEETTEEEEE-ECCTTSCHHHHHHHT-TC-CCCCSS
T ss_pred EEEEEeCCCcEEE-EECCCCcHHHHHHHc-CC-CCCcCC
Confidence 5788866545666 688999999999975 77 578887
No 37
>3nvz_C Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3ns1_C* 3etr_C* 3nvv_C* 3nvw_C* 3nrz_C* 3nvy_C* 3eub_C* 3b9j_C* 1fiq_C* 3rca_C* 3sr6_C*
Probab=77.78 E-value=2.4 Score=52.10 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=46.4
Q ss_pred CCCCeeEEEECCCCeEEEEeCCC----ChH-HHHHHHHHHhCCCCceEEEEec------cCCCCCCCCCc
Q 002015 326 METQTALAVPDEDNCLVVYSSIQ----CPE-YAHATIARCLGIPEHNVRVITR------RVGGGFGGKAI 384 (981)
Q Consensus 326 mEp~~avA~~~~dg~l~V~~stQ----~p~-~~r~~lA~~Lglp~~kVrV~~~------~vGGgFG~K~~ 384 (981)
+.+.++....+.||.++|+++++ ..+ .+.+.+|+.||+|.++|+|... +-+|.+|++..
T Consensus 444 ~~~~~a~v~l~~DG~v~v~~g~~e~GQG~~T~~aQiaAe~Lgi~~e~V~v~~~DT~~~p~~~~t~aSr~t 513 (755)
T 3nvz_C 444 LNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQVASKALKIPISKIYISETSTNTVPNSSPTAASVST 513 (755)
T ss_dssp GCEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEECCCEETTTSCSCCCSCTTCHH
T ss_pred CCcceEEEEEecCCeEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCCCCCCchhHHH
Confidence 45677888888899999999975 433 3466778999999999999754 45788999864
No 38
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=76.04 E-value=1.9 Score=38.02 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=30.4
Q ss_pred eEEEEEECCEEEEeccCCCC-CchHHHHhcCCCCcCCCcCc-Eeeeccccc
Q 002015 12 HSVVFAVNGEKFEVSSVDPS-TTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (981)
Q Consensus 12 ~~i~~~vNg~~~~~~~~~~~-~~L~~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (981)
..++++|||+.+++ +.. .||.++|+. |++. ..++ |.+||+-+.
T Consensus 19 ~~M~I~vNGe~~el---~~~~~Tv~dLL~~-L~~~--~~~vaVavNg~iV~ 63 (87)
T 1tyg_B 19 GRHMLQLNGKDVKW---KKDTGTIQDLLAS-YQLE--NKIVIVERNKEIIG 63 (87)
T ss_dssp ---CEEETTEEECC---SSSCCBHHHHHHH-TTCT--TSCCEEEETTEEEC
T ss_pred cceEEEECCEEEEC---CCCCCcHHHHHHH-hCCC--CCCEEEEECCEECC
Confidence 46789999998865 455 899999975 6764 3445 888998765
No 39
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=75.51 E-value=2 Score=36.97 Aligned_cols=45 Identities=22% Similarity=0.204 Sum_probs=32.4
Q ss_pred EEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc-EeeecccccC
Q 002015 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (981)
Q Consensus 14 i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (981)
|+++|||+.+++ ......||.++|.+ +++.. ..+| |.+||+-+.+
T Consensus 1 M~I~vNGe~~e~-~~~~~~Tl~~LL~~-l~~~~-~~~vAVavNg~iVpr 46 (78)
T 2k5p_A 1 MNLTVNGKPSTV-DGAESLNVTELLSA-LKVAQ-AEYVTVELNGEVLER 46 (78)
T ss_dssp CEEEETTEEEEC-SSCSCEEHHHHHHH-HTCSC-TTTCCEEETTEECCT
T ss_pred CEEEECCEEEEc-CCCCCCcHHHHHHH-cCCCC-CCcEEEEECCEECCh
Confidence 368999999876 22146899999975 67651 3455 8899987764
No 40
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=74.69 E-value=2.2 Score=36.25 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=29.9
Q ss_pred EEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc-Eeeeccccc
Q 002015 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (981)
Q Consensus 15 ~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (981)
+++|||+.++ + +..||.++|.+ +++. ..+| |.+||+-++
T Consensus 2 ~I~vNG~~~e---~-~~~Tl~~LL~~-l~~~--~~~vAV~vNg~iVp 41 (73)
T 2kl0_A 2 LVTINGEQRE---V-QSASVAALMTE-LDCT--GGHFAVALNYDVVP 41 (73)
T ss_dssp CEEETTEEEC---C-CCSBHHHHHHH-TTCC--SSSCEEEESSSEEC
T ss_pred EEEECCEEEE---c-CCCcHHHHHHH-cCCC--CCcEEEEECCEECC
Confidence 5799999875 4 56999999975 6775 3455 889998765
No 41
>1ffv_B CUTL, molybdoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.41.1.1 d.133.1.1 PDB: 1ffu_B*
Probab=73.00 E-value=6.1 Score=48.85 Aligned_cols=56 Identities=16% Similarity=0.149 Sum_probs=45.2
Q ss_pred CeeEEEECCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCceEEEEe------ccCCCCCCCCCc
Q 002015 329 QTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAI 384 (981)
Q Consensus 329 ~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~ 384 (981)
.++....+.||.++|+++++.. ..+.+.+|+.||+|.++|+|.. |+-+|.+|++..
T Consensus 501 ~~a~v~l~~dG~v~v~~g~~e~GqG~~T~~aQiaAe~LGi~~e~V~v~~~DT~~~p~~~~t~aSr~t 567 (803)
T 1ffv_B 501 DSCEIRIHPTGSAIARMGTITQGQGHQTTYAQIIATELGIPSEVIQVEEGDTSTAPYGLGTYGSRST 567 (803)
T ss_dssp EEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTCCGGGEEEECCBTTTSCCCCCSCTTCHH
T ss_pred ccEEEEEecCCeEEEEECCcCCCCCHHHHHHHHHHHHHCCCHHHEEEecCCCCCCCCCCCcccchHH
Confidence 5677788889999999988544 3457778999999999999985 455788888864
No 42
>2w3s_B Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 1jrp_B* 2w3r_B* 1jro_B* 2w54_B* 2w55_B*
Probab=72.61 E-value=5 Score=49.45 Aligned_cols=58 Identities=16% Similarity=0.082 Sum_probs=46.2
Q ss_pred CCCeeEEEECCCCeEEEEeCCCCh-----HHHHHHHHHHhCCCCceEEEEe------ccCCCCCCCCCc
Q 002015 327 ETQTALAVPDEDNCLVVYSSIQCP-----EYAHATIARCLGIPEHNVRVIT------RRVGGGFGGKAI 384 (981)
Q Consensus 327 Ep~~avA~~~~dg~l~V~~stQ~p-----~~~r~~lA~~Lglp~~kVrV~~------~~vGGgFG~K~~ 384 (981)
...++....+.||.++|+++++.. ..+.+.+|+.||+|.++|+|.. |+-+|.+|++..
T Consensus 465 ~~~~a~v~l~~DG~v~v~~g~~e~GqG~~T~~aQiaAe~LGip~e~V~v~~~DT~~~p~~~~t~aSr~t 533 (777)
T 2w3s_B 465 NQAGALVQIYTDGSVALNHGGTEMGQGLHAKMVQVAAAVLGIDPVQVRITATDTSKVPNTSATAASSGA 533 (777)
T ss_dssp CEEEEEEEECTTSCEEEEESCCCSSSCHHHHHHHHHHHHHTSCGGGEEECCEETTTSCSCCCSCTTCHH
T ss_pred CCCceEEEEccCCeEEEEECCccCCCChhHHHHHHHHHHHCCCHHHEEEEcCCCCCCCCCCCCccchHH
Confidence 446778888889999999987543 3456778899999999999974 566888999864
No 43
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=70.51 E-value=3.5 Score=36.37 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=28.8
Q ss_pred EEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+|..||..+++ +++++++||+.|++. | .++.+|
T Consensus 3 ~V~~~~~~~~~~~-~~~~g~tlL~a~~~~-g--~i~~~C 37 (93)
T 1wri_A 3 KVTLKTPDGDITF-DVEPGERLIDIGSEK-A--DLPLSC 37 (93)
T ss_dssp EEEEEETTEEEEE-EECTTSCHHHHHHHH-S--CCCCSS
T ss_pred EEEEEECCCeEEE-EECCCCcHHHHHHHC-c--CCCCCC
Confidence 6888888866666 588999999999986 6 678887
No 44
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=65.84 E-value=3.2 Score=43.80 Aligned_cols=41 Identities=15% Similarity=0.241 Sum_probs=32.2
Q ss_pred EEEEeccCCC-CCchHHHHhcCC---C-CcCCCcCc---------EeeecccccCC
Q 002015 21 EKFEVSSVDP-STTLLEFLRYHT---R-FKSVKLGC---------VLVDAEKTHRP 62 (981)
Q Consensus 21 ~~~~~~~~~~-~~~L~~~LR~~~---~-l~g~k~gC---------vl~dg~~~~~~ 62 (981)
+.+++ ++++ +++|||+||+.. . ..+.+.+| |.|||+++.+|
T Consensus 31 ~~~~v-~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~~~~aC 85 (252)
T 2h88_B 31 QTYEV-DLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLAC 85 (252)
T ss_dssp EEEEE-EGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGG
T ss_pred EEEEE-ecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCcEEccc
Confidence 56777 6778 999999999842 2 46788888 89999987654
No 45
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=65.34 E-value=3.3 Score=43.34 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=31.1
Q ss_pred EEEEeccCCCCCchHHHHhc---CCCC-cCCCcCc---------EeeecccccCC
Q 002015 21 EKFEVSSVDPSTTLLEFLRY---HTRF-KSVKLGC---------VLVDAEKTHRP 62 (981)
Q Consensus 21 ~~~~~~~~~~~~~L~~~LR~---~~~l-~g~k~gC---------vl~dg~~~~~~ 62 (981)
+.+++ +++++++|||.||+ +++. .+.+.+| |.|||+++.+|
T Consensus 24 ~~~~v-~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~~~~aC 77 (241)
T 2bs2_B 24 QEYKI-EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLAC 77 (241)
T ss_dssp EEEEE-ECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGG
T ss_pred EEEEE-eCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCCeecch
Confidence 55777 68899999999985 2333 2678887 88899987654
No 46
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=64.34 E-value=4.9 Score=35.73 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=27.8
Q ss_pred eEEEEEECC--EEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 12 HSVVFAVNG--EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 12 ~~i~~~vNg--~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
.+|+|..|+ +..++ +++++++||+.|++. |+. +..+|
T Consensus 3 ~~V~~~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 41 (98)
T 1frd_A 3 YQVRLINKKQDIDTTI-EIDEETTILDGAEEN-GIE-LPFSC 41 (98)
T ss_dssp EEEEEEETTTTEEEEE-EEETTSCHHHHHHHT-TCC-CCCSS
T ss_pred eEEEEEeCCCCCCEEE-EeCCCCcHHHHHHHc-CCC-cccCC
Confidence 478888854 25566 578999999999875 764 77777
No 47
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=62.83 E-value=3.1 Score=34.33 Aligned_cols=40 Identities=13% Similarity=0.236 Sum_probs=29.7
Q ss_pred EEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc-Eeeeccccc
Q 002015 15 VFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (981)
Q Consensus 15 ~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (981)
+++|||+.+++ +...||.++|+. +++. ..+| |.+||+-+.
T Consensus 2 ~i~vNg~~~~~---~~~~tv~~ll~~-l~~~--~~~v~vavN~~~v~ 42 (66)
T 1f0z_A 2 QILFNDQAMQC---AAGQTVHELLEQ-LDQR--QAGAALAINQQIVP 42 (66)
T ss_dssp CEEESSCEECC---CTTCCHHHHHHH-HTCC--CSSEEEEETTEEEC
T ss_pred EEEECCEEEEc---CCCCcHHHHHHH-cCCC--CCCEEEEECCEECC
Confidence 57999998765 467899999975 5654 3455 888988764
No 48
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=62.77 E-value=5.3 Score=36.15 Aligned_cols=37 Identities=22% Similarity=0.463 Sum_probs=30.2
Q ss_pred EEEEE-ECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~-vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+|. .||+.+++ ++.++++|++.|++. |+.|+...|
T Consensus 2 ~vt~~~~~G~~~~~-~~~~g~tll~a~~~~-gi~~i~~~C 39 (104)
T 3lxf_A 2 AILVTTRDGTRTEI-QAEPGLSLMEALRDA-GIDELLALC 39 (104)
T ss_dssp EEEEECTTSCEEEE-ECCTTSBHHHHHHHT-TCTTCCCTT
T ss_pred EEEEEeCCCCEEEE-EECCCChHHHHHHHc-CCCCCCcCC
Confidence 45664 68998898 799999999999975 887777777
No 49
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=60.40 E-value=6.2 Score=37.18 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=30.4
Q ss_pred eEEEEE-ECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 12 HSVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 12 ~~i~~~-vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
.+|+|. .+|+..++ ++.++++|++.|++. |+.|+...|
T Consensus 22 ~~Vt~~~~~G~~~~v-~~~~G~tLL~aa~~~-gi~gi~~~C 60 (126)
T 3hui_A 22 AKINFVDHTGETRTV-EVEEGATVMEAAIRN-AIPGVEAEC 60 (126)
T ss_dssp EEEEEECTTSCEEEE-EEETTSBHHHHHHTT-TCTTCCCTT
T ss_pred eEEEEEeCCCCEEEE-EECCCCcHHHHHHHc-CCCCCccCC
Confidence 378887 88977777 588999999999875 776676666
No 50
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=59.84 E-value=5.2 Score=36.11 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=28.8
Q ss_pred EEEE-EECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~-~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+| ..||+..++ .+.++++||+.+++. |+.|+...|
T Consensus 2 ~V~~~~~~g~~~~~-~~~~g~tlLeaa~~~-gi~~i~~~C 39 (106)
T 1xlq_A 2 KVVYVSHDGTRREL-DVADGVSLMQAAVSN-GIYDIVGDC 39 (106)
T ss_dssp EEEEECTTSCEEEE-ECCTTCBHHHHHHHT-TCTTSCCTT
T ss_pred EEEEEeCCCCEEEE-EECCCCcHHHHHHHc-CCCCCCcCC
Confidence 5778 579976777 588999999999875 776566666
No 51
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=58.61 E-value=6.2 Score=35.64 Aligned_cols=37 Identities=27% Similarity=0.558 Sum_probs=28.6
Q ss_pred EEEE-EECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~-~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+| ..||+..++ .++++++||+.+++. |+.|+...|
T Consensus 2 ~v~~~~~~g~~~~~-~~~~g~tlL~aa~~~-gi~~i~~~C 39 (106)
T 1uwm_A 2 KIIFIEHNGTRHEV-EAKPGLTVMEAARDN-GVPGIDADC 39 (106)
T ss_dssp EEEEECTTCCEEEE-ECCTTSBHHHHHHTT-TCTTCCCTT
T ss_pred EEEEEeCCCCEEEE-EECCCCcHHHHHHHc-CCCCcccCC
Confidence 5778 578966777 588999999999875 776566666
No 52
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=57.87 E-value=8.3 Score=45.79 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=37.9
Q ss_pred EEEEECCEEEEeccCCCCCchHHHHhcCCCCcCC-----------CcCc----Eeeecc-cccCCC--CCCCCC
Q 002015 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSV-----------KLGC----VLVDAE-KTHRPE--PPPGFS 69 (981)
Q Consensus 14 i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~-----------k~gC----vl~dg~-~~~~~~--~~pG~~ 69 (981)
|+|++||+.+++ +++++||+.||+. |+... .-.| |.+||+ .+.+|. ...||.
T Consensus 2 v~~~ing~~v~v---~~g~tiL~a~~~~-gi~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~ 71 (574)
T 3c8y_A 2 KTIIINGVQFNT---DEDTTILKFARDN-NIDISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMI 71 (574)
T ss_dssp EEEEETTEEEEE---CCCCBHHHHHHHT-TCCCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCE
T ss_pred eEEEECCEEEEe---CCCCHHHHHHHHc-CCCCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCccccee
Confidence 789999998865 6899999999985 55211 2245 899998 666653 357774
No 53
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=57.59 E-value=7.6 Score=34.52 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=27.0
Q ss_pred eEEEEEECCE--EEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 12 HSVVFAVNGE--KFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 12 ~~i~~~vNg~--~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
.+|+|..++. ..++ +++++++||+.|++. |+. +..+|
T Consensus 3 ~~V~~~~~~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 41 (98)
T 1czp_A 3 FKVTLINEAEGTKHEI-EVPDDEYILDAAEEQ-GYD-LPFSC 41 (98)
T ss_dssp EEEEEEETTTTEEEEE-EEETTSCHHHHHHHT-TCC-CCCSS
T ss_pred eEEEEEeCCCCCcEEE-EeCCCCCHHHHHHHc-CCC-ccCCC
Confidence 4678877532 4555 477999999999975 774 77777
No 54
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=56.65 E-value=4.2 Score=42.57 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=31.3
Q ss_pred EEEEeccCCCCCchHHHHhcCCC-----CcCCCcCc---------EeeecccccCCC
Q 002015 21 EKFEVSSVDPSTTLLEFLRYHTR-----FKSVKLGC---------VLVDAEKTHRPE 63 (981)
Q Consensus 21 ~~~~~~~~~~~~~L~~~LR~~~~-----l~g~k~gC---------vl~dg~~~~~~~ 63 (981)
+.+++ ++++++|||+.||+. + ..+.+.+| |.|||+++.+|.
T Consensus 24 ~~~~~-~~~~~~tll~al~~~-~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~ 78 (243)
T 1kf6_B 24 AFYEV-PYDATTSLLDALGYI-KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACK 78 (243)
T ss_dssp EEEEE-EECTTCBHHHHHHHH-HHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGG
T ss_pred EEEEE-ecCCCChHHHHHHHc-CcccCCCcccccCCCCCcCCCCEeEECCEEEeeee
Confidence 44666 678999999999974 4 23678877 899999887653
No 55
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=56.43 E-value=6.6 Score=34.56 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=26.7
Q ss_pred EEEEE-ECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~-vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+|. .|| ..++ +++++++||+.|++. |+ .+..+|
T Consensus 3 ~v~~~~~~g-~~~~-~~~~g~tlL~a~~~~-gi-~i~~~C 38 (95)
T 1frr_A 3 KTVLKTPSG-EFTL-DVPEGTTILDAAEEA-GY-DLPFSC 38 (95)
T ss_dssp EEEEEETTE-EEEE-EECTTCCHHHHHHHT-TC-CCCCSS
T ss_pred EEEEEeCCC-cEEE-EeCCCCcHHHHHHHc-CC-CCCCCC
Confidence 67886 888 4455 468999999999875 76 467777
No 56
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=56.20 E-value=10 Score=49.39 Aligned_cols=89 Identities=44% Similarity=0.765 Sum_probs=78.9
Q ss_pred EEEEEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc---------Eeee----------cccccCC-----------
Q 002015 13 SVVFAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC---------VLVD----------AEKTHRP----------- 62 (981)
Q Consensus 13 ~i~~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC---------vl~d----------g~~~~~~----------- 62 (981)
.|+|+|||+.+++.+++|+++||+|||++++|||||+|| |+|| |++|++|
T Consensus 5 ~i~~~vNg~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~ 84 (1332)
T 3unc_A 5 ELVFFVNGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVA 84 (1332)
T ss_dssp CEEEEETTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCE
T ss_pred cEEEEECCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCCE
Confidence 699999999998647999999999999999999999999 8885 8888654
Q ss_pred ------------------------------CCCCCCC-----------CCCHHHHHHHhhCCcccCCCCHHHHHHHHHHh
Q 002015 63 ------------------------------EPPPGFS-----------KLTISEAEKAIAGNLCRCTGYRPIADACKSFA 101 (981)
Q Consensus 63 ------------------------------~~~pG~~-----------~p~~~~i~~~l~gnlCRCtgY~~i~~A~~~~~ 101 (981)
.|||||+ +|+++||+++|+|||||||||++|++|++.++
T Consensus 85 i~TiEgl~~~~~~~hpvq~a~~~~~~~QCG~CtpG~vms~~~ll~~~~~p~~~~i~~~l~gnlCRCtgy~~i~~a~~~~~ 164 (1332)
T 3unc_A 85 VTTVEGIGSTKTRLHPVQERIAKSHGSQCGFCTPGIVMSMYTLLRNQPEPTVEEIEDAFQGNLCRCTGYRPILQGFRTFA 164 (1332)
T ss_dssp EECGGGTCCTTSCCCHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHCSSCCHHHHHHTTTTCCCSSSCSHHHHHHHGGGC
T ss_pred EEEeccccCCCCCcCHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCHHHHHHHHhCCcccCCCchhHHHHHHHHh
Confidence 1567773 69999999999999999999999999997654
No 57
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=53.04 E-value=6.9 Score=32.67 Aligned_cols=43 Identities=12% Similarity=0.098 Sum_probs=30.5
Q ss_pred EEEEEECCEE----EEeccCCCCCchHHHHhcCCCCcCCCcCc-EeeecccccC
Q 002015 13 SVVFAVNGEK----FEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTHR 61 (981)
Q Consensus 13 ~i~~~vNg~~----~~~~~~~~~~~L~~~LR~~~~l~g~k~gC-vl~dg~~~~~ 61 (981)
.++++|||+. +++ +...|+.++|+. +++. ..++ |.+||+.+..
T Consensus 4 ~m~i~vNg~~~~~~~~~---~~~~tv~~Ll~~-l~~~--~~~v~vavN~~~v~~ 51 (70)
T 1ryj_A 4 GMKFTVITDDGKKILES---GAPRRIKDVLGE-LEIP--IETVVVKKNGQIVID 51 (70)
T ss_dssp CEEEEEEETTEEEEEEE---SSCCBHHHHHHH-TTCC--TTTEEEEETTEECCT
T ss_pred eEEEEEeCccCceeEEC---CCCCcHHHHHHH-hCCC--CCCEEEEECCEECCC
Confidence 3688999988 655 456899999975 5654 3344 7889887653
No 58
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=51.83 E-value=5 Score=36.21 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=27.8
Q ss_pred EEEE-EECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVF-AVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~-~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+| ..||+..++ .++++++||+.+++. |+.|+...|
T Consensus 2 ~V~~~~~~g~~~~~-~~~~g~tlL~aa~~~-gi~~i~~~C 39 (105)
T 1b9r_A 2 RVVFIDEQSGEYAV-DAQDGQSLMEVATQN-GVPGIVAEC 39 (105)
T ss_dssp EEEECCTTTSCEEE-ECCTTCCTTHHHHHH-TCCCCCCSS
T ss_pred EEEEEeCCCCEEEE-EECCCChHHHHHHHc-CCCCcCcCC
Confidence 5777 578965666 578999999999875 765566666
No 59
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=44.27 E-value=10 Score=34.45 Aligned_cols=36 Identities=11% Similarity=0.276 Sum_probs=25.2
Q ss_pred EEEEEEC-C---EEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFAVN-G---EKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~vN-g---~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+|+.| | ...++ +++++++||+.|++. |+. +..+|
T Consensus 3 ~i~~~~~~g~~~~~~~~-~~~~g~tlL~a~~~~-gi~-i~~~C 42 (111)
T 1i7h_A 3 KIVILPHQDLCPDGAVL-EANSGETILDAALRN-GIE-IEHAC 42 (111)
T ss_dssp EEEECCBTTTBTTCEEE-ECCTTCBHHHHHHHT-TCC-CCCTT
T ss_pred EEEEEeCCCcCCCCeEE-EeCCCCcHHHHHHHc-CCC-CcccC
Confidence 6788873 2 22344 467899999999976 764 66666
No 60
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=40.37 E-value=15 Score=29.87 Aligned_cols=38 Identities=29% Similarity=0.284 Sum_probs=27.8
Q ss_pred EEECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc-Eeeeccccc
Q 002015 16 FAVNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC-VLVDAEKTH 60 (981)
Q Consensus 16 ~~vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC-vl~dg~~~~ 60 (981)
++|||+.++ + ...|+.++|+. +++. ...+ |.+||+-+.
T Consensus 2 i~vNg~~~~---~-~~~tv~~ll~~-l~~~--~~~v~vavN~~~v~ 40 (64)
T 2cu3_A 2 VWLNGEPRP---L-EGKTLKEVLEE-MGVE--LKGVAVLLNEEAFL 40 (64)
T ss_dssp EEETTEEEC---C-TTCCHHHHHHH-HTBC--GGGEEEEETTEEEE
T ss_pred EEECCEEEE---c-CCCcHHHHHHH-cCCC--CCcEEEEECCEECC
Confidence 689999875 4 56899999975 5654 3445 788988765
No 61
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=37.22 E-value=28 Score=32.82 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=22.6
Q ss_pred eEEEEEccCCcEEEEEEEEEeccCcccChh
Q 002015 799 SQVEINLLTGETTIVQSDIIYDCGQSLNPA 828 (981)
Q Consensus 799 aeVEVD~~TG~v~V~r~~~v~D~G~~INP~ 828 (981)
++|++|++||.++|-+.+.|.|= +-||.
T Consensus 45 ~~V~id~~tG~~~v~~~~~VVee--ved~~ 72 (129)
T 2kwp_A 45 VRVQIDRKSGDFDTFRRWLVVDE--VTQPT 72 (129)
T ss_dssp EEEEEETTTTEEEEEEEEEEETT--CSCTT
T ss_pred eEEEEECCCCeEEEEEEEEEecC--CCCCc
Confidence 56999999999999999888862 44553
No 62
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=31.63 E-value=27 Score=31.40 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=23.1
Q ss_pred EEEEE-ECCEEEEeccCCCCCchHHHHhcCCCC
Q 002015 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRF 44 (981)
Q Consensus 13 ~i~~~-vNg~~~~~~~~~~~~~L~~~LR~~~~l 44 (981)
+|+|. -+|+.+++ ++.++++||+.+++. |+
T Consensus 8 ~V~~~~~~g~~~~v-~~~~g~tLL~aa~~~-gi 38 (108)
T 2bt6_A 8 TVHFINRDGETLTT-KGKIGDSLLDVVVQN-NL 38 (108)
T ss_dssp EEEEECTTSCEEEE-EEETTCBHHHHHHHT-TC
T ss_pred EEEEECCCCCEEEE-EECCCChHHHHHHHc-CC
Confidence 56665 47887777 688999999999875 44
No 63
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=31.28 E-value=34 Score=30.80 Aligned_cols=36 Identities=25% Similarity=0.457 Sum_probs=25.5
Q ss_pred EEEEE-ECCEEEEeccCCCCCchHHHHhcCCCCcCCCcCc
Q 002015 13 SVVFA-VNGEKFEVSSVDPSTTLLEFLRYHTRFKSVKLGC 51 (981)
Q Consensus 13 ~i~~~-vNg~~~~~~~~~~~~~L~~~LR~~~~l~g~k~gC 51 (981)
+|+|. -||+.+++ .++++++||+.+++. |+. +...|
T Consensus 7 ~v~~~~~~g~~~~~-~~~~g~tlL~aa~~~-gi~-i~~~C 43 (109)
T 2y5c_A 7 NVVFVDRSGQRIPV-SGRVGDNVLHLAQRH-GVD-LEGAC 43 (109)
T ss_dssp EEEEECTTSCEEEE-EEETTCBHHHHHHHT-TCC-CCCTT
T ss_pred EEEEEcCCCCEEEE-EECCCCcHHHHHHHc-CCC-CCcCC
Confidence 55653 48998777 688999999999875 542 34444
No 64
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=25.85 E-value=46 Score=31.45 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=20.0
Q ss_pred CccccccCCeeEEEEEECCEEEEeccCCC
Q 002015 2 GEQEQDRGTRHSVVFAVNGEKFEVSSVDP 30 (981)
Q Consensus 2 ~~~~~~~~~~~~i~~~vNg~~~~~~~~~~ 30 (981)
|+|+||+-.+..+++.|||+.++. -+|-
T Consensus 13 ~~~~~d~~~RP~v~i~I~G~~~~~-LlDT 40 (132)
T 3slz_A 13 GGQGQEPPPEPRITLKVGGQPVTF-LVDT 40 (132)
T ss_dssp -----CCCCSSEEEEEETTEEEEE-EECT
T ss_pred cccCCCccCCCEEEEEECCEEEEE-EEeC
Confidence 789999999999999999999887 4554
No 65
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=25.55 E-value=35 Score=27.07 Aligned_cols=30 Identities=37% Similarity=0.439 Sum_probs=23.9
Q ss_pred HHHHHHHhCCCCceEEEEeccCCC---CCCCCC
Q 002015 354 HATIARCLGIPEHNVRVITRRVGG---GFGGKA 383 (981)
Q Consensus 354 r~~lA~~Lglp~~kVrV~~~~vGG---gFG~K~ 383 (981)
-+.+++.||+|++.|.|.-..+-. ||||+.
T Consensus 25 t~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~ 57 (64)
T 3abf_A 25 TEMASRLLGEPYEEVRVILYEVRRDQWAAGGVL 57 (64)
T ss_dssp HHHHHHHTTCCGGGEEEEEEEECGGGEEETTEE
T ss_pred HHHHHHHhCCCcccEEEEEEEcCHHHeeECCEE
Confidence 345778899999999998777765 688774
No 66
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=23.79 E-value=36 Score=30.82 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.0
Q ss_pred ccCCeeEEEE-EECCEEEEeccCCCCCchHHH
Q 002015 7 DRGTRHSVVF-AVNGEKFEVSSVDPSTTLLEF 37 (981)
Q Consensus 7 ~~~~~~~i~~-~vNg~~~~~~~~~~~~~L~~~ 37 (981)
.++..|.|++ +++|+.+++ +|+|+.|+.++
T Consensus 3 ~~~~~M~I~Vk~l~g~~~~v-~V~~~~TV~dL 33 (105)
T 1v2y_A 3 SGSSGMTVRVCKMDGEVMPV-VVVQNATVLDL 33 (105)
T ss_dssp CCCCSEEEEEECSSSCEEEE-EECTTCBHHHH
T ss_pred CCCCcEEEEEEecCCCEEEE-EECCCChHHHH
Confidence 4556678877 689999999 79999997764
No 67
>1n91_A ORF, hypothetical protein; alpha+beta, northeast structural genomics consortium, PSI, P structure initiative, NESG; NMR {Escherichia coli} SCOP: d.206.1.1 PDB: 1yh5_A
Probab=21.24 E-value=74 Score=28.99 Aligned_cols=45 Identities=7% Similarity=-0.002 Sum_probs=40.3
Q ss_pred eCCcEEEEecccccCCchhhHHHHHHHHHhcccccCCCCCCCCcEEEEcCCCC
Q 002015 604 SDGSVVVEVGGIELGQGLWTKVKQMAAFALSSIQCGGMGDLLETVRVIQADTL 656 (981)
Q Consensus 604 ~DG~v~v~~g~~d~GQG~~T~~aqiaAe~Lgi~~~~~~~~~~e~V~v~~~DT~ 656 (981)
.++.+.|...+....--.+..+....|+.||+ |..+|+++.|.|.
T Consensus 34 ~~~~LkV~v~ApP~dGkAN~ali~~LAk~l~V--------~ks~V~Iv~G~tS 78 (108)
T 1n91_A 34 HGDEVKVAITAPPVDGQANSHLVKFLGKQFRV--------AKSQVVIEKGELG 78 (108)
T ss_dssp CSSCEEEECCCCSSHHHHHHHHHHHHHHHTCC--------CTTTEEESSCTTS
T ss_pred cCCEEEEEEecCCCCChHHHHHHHHHHHHhCC--------ccceEEEEecCCC
Confidence 36889999988888777899999999999999 9999999999885
No 68
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=20.35 E-value=90 Score=38.29 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=21.4
Q ss_pred EEEEECCEEEEeccCCCCCchHHHHhcC
Q 002015 14 VVFAVNGEKFEVSSVDPSTTLLEFLRYH 41 (981)
Q Consensus 14 i~~~vNg~~~~~~~~~~~~~L~~~LR~~ 41 (981)
++|+|||+.+++ ++++|||+.++..
T Consensus 2 v~i~idg~~~~v---~~g~til~a~~~~ 26 (783)
T 3i9v_3 2 VRVKVNDRIVEV---PPGTSVMDAVFHA 26 (783)
T ss_dssp EEEECSSCEEEE---CTTCBHHHHHHHT
T ss_pred eEEEECCEEEEe---CCCChHHHHHHHh
Confidence 789999998765 5899999999864
Done!