Query 002016
Match_columns 981
No_of_seqs 321 out of 1114
Neff 6.8
Searched_HMMs 46136
Date Thu Mar 28 14:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002016.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002016hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2103 Uncharacterized conser 100.0 6E-169 1E-173 1443.2 70.4 877 19-981 14-910 (910)
2 PF07774 DUF1620: Protein of u 100.0 4.5E-71 9.7E-76 579.1 21.2 210 762-980 1-217 (217)
3 PRK11138 outer membrane biogen 99.9 1.4E-19 3E-24 209.5 35.1 214 28-258 43-278 (394)
4 TIGR03300 assembly_YfgL outer 99.8 1E-17 2.2E-22 192.6 36.0 234 6-258 6-263 (377)
5 PRK11138 outer membrane biogen 99.8 2.4E-16 5.2E-21 182.6 29.6 213 26-258 86-316 (394)
6 PF13360 PQQ_2: PQQ-like domai 99.7 7.8E-16 1.7E-20 164.5 26.4 219 23-258 7-234 (238)
7 TIGR03300 assembly_YfgL outer 99.7 1.3E-14 2.8E-19 166.9 30.9 210 25-258 81-301 (377)
8 cd00216 PQQ_DH Dehydrogenases 99.6 2.8E-14 6.1E-19 169.8 24.1 222 27-258 37-323 (488)
9 cd00216 PQQ_DH Dehydrogenases 99.6 3.8E-14 8.1E-19 168.7 24.9 230 25-265 126-434 (488)
10 PF13360 PQQ_2: PQQ-like domai 99.6 1.7E-13 3.7E-18 146.4 22.2 182 61-258 1-195 (238)
11 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.5 2.5E-12 5.4E-17 154.0 23.4 219 29-257 47-336 (527)
12 TIGR03074 PQQ_membr_DH membran 99.5 3.7E-12 8.1E-17 156.8 25.0 210 48-258 189-481 (764)
13 COG1520 FOG: WD40-like repeat 99.5 3.7E-12 8.1E-17 146.5 23.0 219 25-258 39-272 (370)
14 COG1520 FOG: WD40-like repeat 99.3 4.3E-11 9.4E-16 137.7 18.1 185 24-221 83-279 (370)
15 TIGR03074 PQQ_membr_DH membran 99.3 1.2E-10 2.7E-15 143.5 21.4 190 25-219 210-486 (764)
16 TIGR03075 PQQ_enz_alc_DH PQQ-d 99.3 1.5E-10 3.4E-15 138.7 19.8 190 25-218 85-341 (527)
17 KOG4649 PQQ (pyrrolo-quinoline 99.0 3.7E-08 8E-13 103.6 18.5 183 53-257 23-209 (354)
18 KOG4649 PQQ (pyrrolo-quinoline 98.7 2.6E-06 5.6E-11 90.0 22.9 178 25-223 39-219 (354)
19 COG4993 Gcd Glucose dehydrogen 98.7 7.8E-07 1.7E-11 103.3 18.7 206 51-257 212-491 (773)
20 COG4993 Gcd Glucose dehydrogen 98.0 0.00014 3.1E-09 85.1 15.8 199 19-218 225-496 (773)
21 TIGR03866 PQQ_ABC_repeats PQQ- 97.7 0.12 2.6E-06 56.2 34.8 184 55-257 3-190 (300)
22 PF01011 PQQ: PQQ enzyme repea 97.4 0.00023 5E-09 54.5 4.8 31 54-84 1-31 (38)
23 PF02239 Cytochrom_D1: Cytochr 97.4 0.3 6.5E-06 56.6 32.1 320 21-362 18-355 (369)
24 TIGR02658 TTQ_MADH_Hv methylam 97.3 0.54 1.2E-05 54.0 33.4 190 52-257 11-226 (352)
25 cd00200 WD40 WD40 domain, foun 97.3 0.15 3.3E-06 53.5 26.1 188 53-257 63-252 (289)
26 TIGR03866 PQQ_ABC_repeats PQQ- 97.3 0.4 8.8E-06 52.1 31.7 190 52-257 41-240 (300)
27 PF02239 Cytochrom_D1: Cytochr 97.2 0.36 7.8E-06 56.0 29.7 157 54-222 6-170 (369)
28 TIGR02658 TTQ_MADH_Hv methylam 97.1 0.11 2.5E-06 59.5 24.1 206 49-257 53-333 (352)
29 PF05096 Glu_cyclase_2: Glutam 97.1 0.11 2.5E-06 56.7 22.3 155 52-220 54-213 (264)
30 cd00200 WD40 WD40 domain, foun 97.0 0.2 4.4E-06 52.6 23.3 188 53-257 21-210 (289)
31 PF13570 PQQ_3: PQQ-like domai 96.7 0.0025 5.5E-08 49.1 4.7 40 73-115 1-40 (40)
32 PF13570 PQQ_3: PQQ-like domai 96.7 0.0035 7.5E-08 48.4 5.1 40 29-72 1-40 (40)
33 PF01011 PQQ: PQQ enzyme repea 96.7 0.0037 8E-08 47.8 5.2 32 98-129 2-33 (38)
34 smart00564 PQQ beta-propeller 96.7 0.0021 4.6E-08 47.1 3.6 28 52-79 5-32 (33)
35 PTZ00421 coronin; Provisional 96.6 0.37 8E-06 58.0 24.5 196 53-257 88-293 (493)
36 PF10282 Lactonase: Lactonase, 96.3 3 6.5E-05 47.7 32.7 222 25-253 21-274 (345)
37 KOG2103 Uncharacterized conser 96.1 0.15 3.3E-06 62.2 16.4 196 22-246 60-267 (910)
38 smart00564 PQQ beta-propeller 95.8 0.017 3.6E-07 42.2 4.4 29 94-122 4-32 (33)
39 KOG1539 WD repeat protein [Gen 95.7 3.4 7.4E-05 51.1 25.6 191 53-257 124-321 (910)
40 KOG0296 Angio-associated migra 95.7 0.45 9.7E-06 53.5 16.7 156 52-219 201-365 (399)
41 PF10282 Lactonase: Lactonase, 95.6 5.6 0.00012 45.5 37.2 196 56-257 2-227 (345)
42 PTZ00420 coronin; Provisional 95.6 4.3 9.3E-05 49.8 26.6 193 53-257 87-296 (568)
43 PF05935 Arylsulfotrans: Aryls 95.5 0.49 1.1E-05 56.8 18.1 151 53-218 113-309 (477)
44 PHA02713 hypothetical protein; 94.7 1.9 4.1E-05 52.9 20.2 171 52-239 302-517 (557)
45 PTZ00421 coronin; Provisional 94.7 3.7 8E-05 49.6 22.2 155 53-218 138-298 (493)
46 KOG2048 WD40 repeat protein [G 94.7 7.9 0.00017 47.0 23.9 188 52-257 36-236 (691)
47 KOG0316 Conserved WD40 repeat- 94.5 2.3 5.1E-05 45.5 17.3 194 51-258 27-261 (307)
48 KOG2048 WD40 repeat protein [G 94.4 2.1 4.5E-05 51.7 18.5 159 52-218 121-283 (691)
49 KOG0278 Serine/threonine kinas 93.9 2.1 4.6E-05 46.1 15.4 146 52-224 154-302 (334)
50 KOG1539 WD repeat protein [Gen 93.3 7 0.00015 48.5 20.5 158 45-215 165-325 (910)
51 PLN02919 haloacid dehalogenase 93.3 6.4 0.00014 52.0 22.2 200 53-257 635-891 (1057)
52 PHA03098 kelch-like protein; P 93.1 6.9 0.00015 47.5 20.9 152 52-219 293-471 (534)
53 PF05096 Glu_cyclase_2: Glutam 93.0 5.5 0.00012 43.9 17.6 155 95-268 54-216 (264)
54 PHA02790 Kelch-like protein; P 93.0 11 0.00024 45.3 22.1 146 52-219 270-430 (480)
55 PF05935 Arylsulfotrans: Aryls 92.9 2.1 4.5E-05 51.5 15.6 145 23-174 131-313 (477)
56 KOG0318 WD40 repeat stress pro 92.9 26 0.00056 41.7 32.9 151 51-213 200-353 (603)
57 COG3823 Glutamine cyclotransfe 92.8 2.9 6.3E-05 44.2 14.1 78 51-129 53-134 (262)
58 PF14269 Arylsulfotran_2: Aryl 92.7 20 0.00043 40.5 22.1 65 152-219 94-182 (299)
59 PF06433 Me-amine-dh_H: Methyl 92.6 23 0.00049 40.5 24.5 195 52-257 105-323 (342)
60 PRK11028 6-phosphogluconolacto 92.3 23 0.0005 39.9 32.8 189 55-255 3-206 (330)
61 KOG0291 WD40-repeat-containing 92.2 5.7 0.00012 48.7 17.4 111 95-218 361-474 (893)
62 TIGR03548 mutarot_permut cycli 92.0 21 0.00045 40.3 21.7 161 25-197 45-232 (323)
63 KOG2055 WD40 repeat protein [G 92.0 19 0.00041 42.2 20.5 199 39-255 214-418 (514)
64 COG4257 Vgb Streptogramin lyas 91.9 6.6 0.00014 43.2 15.9 192 53-265 72-271 (353)
65 KOG3881 Uncharacterized conser 91.5 6.6 0.00014 44.9 16.1 154 50-217 112-284 (412)
66 PLN00181 protein SPA1-RELATED; 91.5 29 0.00063 44.5 24.5 106 53-166 545-652 (793)
67 PLN00181 protein SPA1-RELATED; 91.3 53 0.0012 42.1 29.2 190 52-255 494-691 (793)
68 TIGR03548 mutarot_permut cycli 91.2 30 0.00065 39.0 22.9 145 64-218 40-200 (323)
69 KOG0296 Angio-associated migra 91.2 32 0.00069 39.3 27.0 151 53-219 76-229 (399)
70 KOG0291 WD40-repeat-containing 91.2 47 0.001 41.2 34.1 97 153-257 371-469 (893)
71 PHA02713 hypothetical protein; 91.0 5 0.00011 49.3 16.2 149 52-218 350-539 (557)
72 KOG0274 Cdc4 and related F-box 90.3 24 0.00052 43.1 20.9 180 53-256 218-402 (537)
73 KOG0310 Conserved WD40 repeat- 90.2 10 0.00022 44.5 16.3 151 52-218 121-276 (487)
74 PRK11028 6-phosphogluconolacto 89.9 38 0.00083 38.1 30.2 196 52-255 45-259 (330)
75 KOG0266 WD40 repeat-containing 89.7 36 0.00078 40.7 21.6 155 52-219 214-373 (456)
76 PTZ00420 coronin; Provisional 89.7 20 0.00042 44.2 19.5 69 56-126 141-209 (568)
77 KOG0275 Conserved WD40 repeat- 89.7 3.4 7.3E-05 45.9 11.5 152 95-258 317-471 (508)
78 PRK14131 N-acetylneuraminic ac 89.4 38 0.00083 39.3 21.0 70 53-124 38-122 (376)
79 KOG0310 Conserved WD40 repeat- 88.6 8.4 0.00018 45.1 14.3 131 54-198 167-300 (487)
80 TIGR03547 muta_rot_YjhT mutatr 88.4 32 0.0007 39.2 19.3 162 53-223 17-238 (346)
81 PLN02919 haloacid dehalogenase 88.4 22 0.00047 47.1 19.9 157 53-215 694-893 (1057)
82 PHA02790 Kelch-like protein; P 87.8 15 0.00032 44.3 16.7 147 52-213 317-473 (480)
83 PF08450 SGL: SMP-30/Gluconola 87.6 44 0.00096 35.9 24.6 152 53-221 51-223 (246)
84 PF08450 SGL: SMP-30/Gluconola 87.5 45 0.00098 35.8 26.3 143 53-210 11-164 (246)
85 KOG1446 Histone H3 (Lys4) meth 87.5 54 0.0012 36.8 23.2 217 20-257 37-265 (311)
86 KOG0278 Serine/threonine kinas 87.4 16 0.00034 39.8 14.3 108 95-218 154-262 (334)
87 KOG1274 WD40 repeat protein [G 86.0 35 0.00076 43.1 18.2 153 52-219 65-227 (933)
88 KOG0319 WD40-repeat-containing 86.0 22 0.00047 43.9 16.1 193 52-257 73-314 (775)
89 PRK05137 tolB translocation pr 85.9 81 0.0018 37.3 24.4 187 52-257 212-415 (435)
90 KOG0316 Conserved WD40 repeat- 85.9 57 0.0012 35.4 22.7 145 95-257 29-176 (307)
91 TIGR03547 muta_rot_YjhT mutatr 85.7 68 0.0015 36.5 20.0 137 52-197 62-266 (346)
92 PF14269 Arylsulfotran_2: Aryl 85.6 12 0.00026 42.3 13.4 116 53-171 154-297 (299)
93 KOG0266 WD40 repeat-containing 84.8 35 0.00076 40.8 17.7 157 53-218 258-417 (456)
94 PRK03629 tolB translocation pr 84.4 95 0.0021 36.7 23.2 150 52-215 209-368 (429)
95 PRK04922 tolB translocation pr 84.3 95 0.0021 36.7 23.2 150 52-215 214-373 (433)
96 KOG0649 WD40 repeat protein [G 84.3 2.7 5.7E-05 45.2 6.8 68 52-121 125-193 (325)
97 KOG1445 Tumor-specific antigen 83.4 9.3 0.0002 46.0 11.3 150 52-219 639-809 (1012)
98 PRK04792 tolB translocation pr 82.9 1.1E+02 0.0024 36.4 23.6 147 52-214 228-386 (448)
99 KOG0270 WD40 repeat-containing 81.8 41 0.00089 39.3 15.4 116 97-228 257-378 (463)
100 KOG4547 WD40 repeat-containing 80.2 38 0.00083 40.7 15.0 106 145-258 69-176 (541)
101 KOG0303 Actin-binding protein 79.8 36 0.00078 39.3 13.9 73 52-126 143-215 (472)
102 COG3391 Uncharacterized conser 79.3 1.3E+02 0.0029 35.0 22.4 191 52-257 84-286 (381)
103 COG3391 Uncharacterized conser 78.5 1.4E+02 0.003 34.8 20.0 155 51-218 125-291 (381)
104 KOG4441 Proteins containing BT 78.4 59 0.0013 40.2 16.7 151 53-219 284-459 (571)
105 KOG0270 WD40 repeat-containing 77.5 50 0.0011 38.6 14.3 74 53-129 299-376 (463)
106 PF14727 PHTB1_N: PTHB1 N-term 77.4 38 0.00082 40.1 14.0 92 31-127 231-329 (418)
107 PHA03098 kelch-like protein; P 77.0 73 0.0016 38.7 17.0 123 93-228 292-430 (534)
108 KOG0315 G-protein beta subunit 75.9 1.3E+02 0.0028 33.0 18.1 60 53-114 95-154 (311)
109 COG4946 Uncharacterized protei 75.8 1.8E+02 0.0039 34.6 18.8 194 48-257 230-434 (668)
110 PLN02153 epithiospecifier prot 75.4 1.5E+02 0.0033 33.6 20.8 158 52-218 31-231 (341)
111 KOG4441 Proteins containing BT 75.2 90 0.0019 38.6 17.1 150 52-218 331-505 (571)
112 COG3823 Glutamine cyclotransfe 74.1 81 0.0017 33.8 13.6 101 105-222 67-170 (262)
113 PF14870 PSII_BNR: Photosynthe 73.9 1.6E+02 0.0036 33.3 18.4 150 52-219 113-268 (302)
114 PRK00178 tolB translocation pr 73.7 1.9E+02 0.0041 33.9 23.5 146 52-214 209-367 (430)
115 PRK00178 tolB translocation pr 73.1 2E+02 0.0042 33.8 23.1 149 94-257 209-366 (430)
116 COG2706 3-carboxymuconate cycl 70.7 2E+02 0.0044 33.0 25.7 200 51-253 49-273 (346)
117 PLN02193 nitrile-specifier pro 69.4 2.6E+02 0.0055 33.6 22.2 157 52-219 174-358 (470)
118 TIGR02800 propeller_TolB tol-p 69.1 2.2E+02 0.0049 32.9 23.2 149 51-214 199-358 (417)
119 PF14583 Pectate_lyase22: Olig 69.0 1.8E+02 0.0039 34.1 16.4 70 53-125 47-121 (386)
120 PLN02193 nitrile-specifier pro 68.9 2.1E+02 0.0044 34.4 17.9 156 52-218 227-416 (470)
121 KOG2106 Uncharacterized conser 67.8 1.9E+02 0.0041 34.7 16.1 144 54-216 340-484 (626)
122 PRK14131 N-acetylneuraminic ac 67.7 2.4E+02 0.0052 32.7 20.5 51 52-104 83-148 (376)
123 COG4257 Vgb Streptogramin lyas 67.4 2.1E+02 0.0046 32.0 15.8 194 53-266 114-315 (353)
124 KOG0286 G-protein beta subunit 66.7 2.2E+02 0.0048 32.0 15.9 151 52-215 155-308 (343)
125 KOG1274 WD40 repeat protein [G 65.7 1.5E+02 0.0032 37.9 15.6 119 52-173 107-229 (933)
126 KOG4547 WD40 repeat-containing 65.0 3.2E+02 0.007 33.2 17.7 116 53-176 70-186 (541)
127 KOG0285 Pleiotropic regulator 64.4 2.7E+02 0.0059 32.1 19.2 110 55-172 207-317 (460)
128 PLN00033 photosystem II stabil 64.0 3E+02 0.0065 32.5 21.4 133 24-171 69-214 (398)
129 PLN02153 epithiospecifier prot 63.3 2.7E+02 0.0058 31.6 18.2 156 52-218 84-290 (341)
130 PRK13684 Ycf48-like protein; P 62.7 2.8E+02 0.0061 31.7 18.1 179 22-218 110-294 (334)
131 KOG1027 Serine/threonine prote 62.5 26 0.00056 44.2 8.5 109 52-177 106-216 (903)
132 KOG0282 mRNA splicing factor [ 62.5 64 0.0014 38.1 11.1 142 97-256 227-374 (503)
133 PRK04043 tolB translocation pr 61.5 3.3E+02 0.0073 32.2 23.7 147 52-214 198-361 (419)
134 PRK05137 tolB translocation pr 61.5 3.3E+02 0.0072 32.1 23.1 109 94-214 212-326 (435)
135 cd00028 B_lectin Bulb-type man 61.1 55 0.0012 31.2 9.0 71 73-170 41-112 (116)
136 KOG0293 WD40 repeat-containing 60.6 2E+02 0.0044 33.6 14.4 120 35-163 263-385 (519)
137 KOG4378 Nuclear protein COP1 [ 60.4 2E+02 0.0043 34.5 14.4 144 53-210 133-280 (673)
138 COG3386 Gluconolactonase [Carb 60.3 3E+02 0.0065 31.2 16.6 32 143-175 221-255 (307)
139 smart00108 B_lectin Bulb-type 60.2 67 0.0015 30.4 9.4 71 73-170 40-111 (114)
140 PRK02888 nitrous-oxide reducta 60.0 2.7E+02 0.0058 34.7 16.3 142 55-216 206-357 (635)
141 KOG2055 WD40 repeat protein [G 59.0 88 0.0019 36.9 11.4 78 50-129 312-389 (514)
142 KOG0315 G-protein beta subunit 58.5 2.9E+02 0.0063 30.5 21.4 134 98-257 11-157 (311)
143 PRK13684 Ycf48-like protein; P 58.3 3.3E+02 0.0072 31.1 22.6 186 7-219 15-209 (334)
144 KOG0318 WD40 repeat stress pro 58.1 4.1E+02 0.0089 32.2 27.5 183 53-257 290-476 (603)
145 PF05567 Neisseria_PilC: Neiss 58.1 2.2E+02 0.0047 32.8 14.7 55 201-257 180-242 (335)
146 KOG1036 Mitotic spindle checkp 57.0 2.7E+02 0.0058 31.5 14.2 103 53-168 65-169 (323)
147 KOG0265 U5 snRNP-specific prot 57.0 2.9E+02 0.0063 31.2 14.4 34 95-128 101-134 (338)
148 KOG0275 Conserved WD40 repeat- 55.8 2E+02 0.0042 32.6 12.9 196 51-264 223-431 (508)
149 KOG0319 WD40-repeat-containing 55.6 1.7E+02 0.0038 36.5 13.5 195 43-254 152-354 (775)
150 KOG2321 WD40 repeat protein [G 55.1 2.5E+02 0.0054 34.3 14.3 115 56-173 148-269 (703)
151 KOG0649 WD40 repeat protein [G 54.8 3.3E+02 0.0071 30.0 24.6 195 53-265 22-245 (325)
152 KOG0303 Actin-binding protein 54.5 1.6E+02 0.0034 34.3 12.2 93 95-198 143-237 (472)
153 COG3386 Gluconolactonase [Carb 54.1 3.4E+02 0.0074 30.8 15.2 143 97-254 38-193 (307)
154 KOG0295 WD40 repeat-containing 53.5 3E+02 0.0065 31.8 14.1 149 93-257 203-367 (406)
155 KOG0271 Notchless-like WD40 re 53.5 68 0.0015 37.0 9.1 109 51-167 167-281 (480)
156 KOG0647 mRNA export protein (c 51.8 4E+02 0.0087 30.1 17.0 105 52-168 83-190 (347)
157 PRK04792 tolB translocation pr 51.6 4.9E+02 0.011 31.0 26.6 150 94-257 228-385 (448)
158 PRK03629 tolB translocation pr 51.4 4.8E+02 0.01 30.8 23.4 149 94-257 209-366 (429)
159 KOG0285 Pleiotropic regulator 48.9 3.4E+02 0.0073 31.4 13.5 175 22-215 123-312 (460)
160 KOG0274 Cdc4 and related F-box 48.3 6.1E+02 0.013 31.2 23.1 180 53-257 261-444 (537)
161 KOG0282 mRNA splicing factor [ 48.0 1.8E+02 0.004 34.5 11.7 73 52-125 269-341 (503)
162 TIGR02800 propeller_TolB tol-p 47.6 5E+02 0.011 30.0 23.3 149 94-257 200-357 (417)
163 PF14783 BBS2_Mid: Ciliary BBS 46.9 2.8E+02 0.006 26.8 12.1 68 53-127 15-82 (111)
164 PRK01742 tolB translocation pr 46.8 5.5E+02 0.012 30.2 21.4 143 52-215 214-366 (429)
165 PF06977 SdiA-regulated: SdiA- 46.8 4.3E+02 0.0094 29.0 19.2 60 52-113 32-93 (248)
166 KOG0280 Uncharacterized conser 45.7 41 0.00089 37.5 5.8 70 53-124 178-252 (339)
167 KOG0281 Beta-TrCP (transducin 45.6 2.7E+02 0.0059 31.9 12.1 100 95-216 246-354 (499)
168 KOG0263 Transcription initiati 44.7 1.7E+02 0.0037 36.6 11.4 68 98-173 549-618 (707)
169 KOG3881 Uncharacterized conser 43.9 38 0.00083 38.9 5.4 73 52-124 258-330 (412)
170 COG2706 3-carboxymuconate cycl 43.6 5.7E+02 0.012 29.5 31.3 191 55-255 4-222 (346)
171 PF14583 Pectate_lyase22: Olig 43.4 6E+02 0.013 29.9 15.0 75 94-175 46-123 (386)
172 KOG0646 WD40 repeat protein [G 43.0 6.5E+02 0.014 30.0 17.7 135 55-198 95-239 (476)
173 PF05262 Borrelia_P83: Borreli 42.9 1.4E+02 0.0031 36.0 10.2 97 153-256 374-472 (489)
174 KOG0646 WD40 repeat protein [G 42.8 6.5E+02 0.014 30.0 16.6 31 94-124 90-121 (476)
175 KOG1240 Protein kinase contain 41.3 1.1E+03 0.023 32.0 17.8 67 152-222 1171-1239(1431)
176 PF14870 PSII_BNR: Photosynthe 40.1 6E+02 0.013 28.8 15.5 169 20-198 123-296 (302)
177 PF06433 Me-amine-dh_H: Methyl 39.7 6.5E+02 0.014 29.1 29.9 190 54-258 3-217 (342)
178 COG3419 PilY1 Tfp pilus assemb 39.4 4.3E+02 0.0094 34.7 14.0 27 97-123 583-609 (1036)
179 PF14727 PHTB1_N: PTHB1 N-term 39.2 7.3E+02 0.016 29.5 19.5 82 631-752 189-280 (418)
180 KOG1517 Guanine nucleotide bin 38.4 4.9E+02 0.011 34.3 14.0 136 97-242 1178-1323(1387)
181 TIGR02276 beta_rpt_yvtn 40-res 37.3 82 0.0018 23.6 4.9 31 52-82 2-33 (42)
182 KOG0288 WD40 repeat protein Ti 37.3 2.5E+02 0.0053 33.0 10.4 107 100-218 315-425 (459)
183 PF01453 B_lectin: D-mannose b 36.4 2.3E+02 0.005 27.1 8.9 59 95-170 19-78 (114)
184 KOG0643 Translation initiation 35.8 6.7E+02 0.014 28.1 19.0 27 102-128 70-96 (327)
185 PF03178 CPSF_A: CPSF A subuni 35.3 6.8E+02 0.015 28.0 22.3 175 64-254 3-202 (321)
186 PRK04922 tolB translocation pr 35.1 8.1E+02 0.018 28.8 22.6 149 94-257 214-371 (433)
187 KOG0639 Transducin-like enhanc 34.5 4.8E+02 0.01 31.5 12.3 111 52-172 520-631 (705)
188 KOG0379 Kelch repeat-containin 34.2 6.9E+02 0.015 30.2 14.5 155 53-218 122-307 (482)
189 KOG0281 Beta-TrCP (transducin 34.2 88 0.0019 35.6 6.2 72 52-126 329-400 (499)
190 KOG0283 WD40 repeat-containing 34.0 5.8E+02 0.013 32.3 13.7 110 96-218 421-540 (712)
191 smart00108 B_lectin Bulb-type 33.3 4.2E+02 0.009 24.9 10.5 22 151-173 61-82 (114)
192 PF08553 VID27: VID27 cytoplas 33.1 2.1E+02 0.0045 36.8 10.0 101 53-161 542-646 (794)
193 KOG0292 Vesicle coat complex C 32.9 1.2E+03 0.027 30.3 21.0 126 56-211 220-349 (1202)
194 KOG4499 Ca2+-binding protein R 32.1 1.2E+02 0.0025 33.2 6.4 78 153-236 179-265 (310)
195 PF06977 SdiA-regulated: SdiA- 32.1 4E+02 0.0087 29.3 11.0 70 181-255 26-95 (248)
196 PF15525 DUF4652: Domain of un 31.6 5.2E+02 0.011 27.4 10.8 66 496-573 87-153 (200)
197 KOG2106 Uncharacterized conser 31.6 1E+03 0.022 28.9 25.6 221 52-312 256-489 (626)
198 PF14781 BBS2_N: Ciliary BBSom 31.3 5.2E+02 0.011 25.8 10.4 73 94-171 62-134 (136)
199 KOG0288 WD40 repeat protein Ti 31.2 9.4E+02 0.02 28.4 14.1 185 53-258 231-421 (459)
200 KOG0263 Transcription initiati 31.1 1.9E+02 0.0041 36.2 8.8 72 54-126 548-619 (707)
201 KOG3914 WD repeat protein WDR4 31.0 1E+02 0.0022 35.7 6.2 72 52-125 162-234 (390)
202 PF09910 DUF2139: Uncharacteri 31.0 8.4E+02 0.018 27.8 17.5 106 98-216 70-187 (339)
203 KOG0273 Beta-transducin family 30.9 4.5E+02 0.0098 31.4 11.3 67 102-175 428-495 (524)
204 KOG4499 Ca2+-binding protein R 30.8 2.1E+02 0.0046 31.2 8.1 83 95-177 169-256 (310)
205 KOG0265 U5 snRNP-specific prot 30.8 1.2E+02 0.0026 34.1 6.5 63 52-115 101-164 (338)
206 cd00028 B_lectin Bulb-type man 30.5 4.3E+02 0.0092 25.0 9.7 22 151-173 62-83 (116)
207 KOG0271 Notchless-like WD40 re 30.4 9.5E+02 0.021 28.2 14.5 67 52-119 126-192 (480)
208 TIGR00548 lolB outer membrane 30.2 75 0.0016 33.7 4.8 58 53-118 51-108 (202)
209 KOG1188 WD40 repeat protein [G 30.0 5.8E+02 0.013 29.4 11.7 64 147-214 42-106 (376)
210 KOG0639 Transducin-like enhanc 29.7 1.8E+02 0.004 34.7 8.0 74 51-127 561-634 (705)
211 KOG0268 Sof1-like rRNA process 29.1 5.6E+02 0.012 29.8 11.3 59 55-117 81-139 (433)
212 KOG1273 WD40 repeat protein [G 28.9 9.3E+02 0.02 27.6 16.9 191 50-252 74-277 (405)
213 PF04841 Vps16_N: Vps16, N-ter 28.8 1E+03 0.022 28.1 16.7 99 64-170 62-163 (410)
214 KOG0289 mRNA splicing factor [ 27.9 1.1E+03 0.024 28.1 18.9 76 51-127 313-390 (506)
215 PLN00033 photosystem II stabil 27.8 1.1E+03 0.023 27.9 19.7 149 53-219 189-363 (398)
216 KOG1272 WD40-repeat-containing 27.7 1.6E+02 0.0035 34.9 7.1 111 53-177 141-254 (545)
217 KOG1912 WD40 repeat protein [G 27.3 8.1E+02 0.018 31.3 13.0 77 98-177 81-158 (1062)
218 KOG1445 Tumor-specific antigen 26.0 6.4E+02 0.014 31.3 11.6 60 94-162 139-200 (1012)
219 PRK01742 tolB translocation pr 25.8 1.1E+03 0.024 27.6 22.3 145 94-257 214-364 (429)
220 PF09910 DUF2139: Uncharacteri 25.5 1E+03 0.023 27.1 16.6 102 152-258 76-185 (339)
221 KOG0650 WD40 repeat nucleolar 24.1 2.1E+02 0.0045 35.0 7.3 61 98-164 414-474 (733)
222 COG3419 PilY1 Tfp pilus assemb 24.0 1.2E+03 0.025 31.0 14.1 74 54-127 583-686 (1036)
223 PF08553 VID27: VID27 cytoplas 23.7 1.2E+03 0.026 30.2 14.3 152 54-213 443-608 (794)
224 PF02333 Phytase: Phytase; In 23.6 1.2E+03 0.027 27.3 15.6 45 627-681 171-215 (381)
225 KOG0292 Vesicle coat complex C 22.8 1.8E+03 0.039 28.9 28.3 173 99-314 220-399 (1202)
226 KOG0306 WD40-repeat-containing 22.4 1.7E+03 0.037 28.5 27.1 103 56-169 339-449 (888)
227 KOG1188 WD40 repeat protein [G 22.2 1.2E+03 0.027 26.8 12.5 132 69-213 17-154 (376)
228 PRK02889 tolB translocation pr 22.1 1.3E+03 0.029 27.0 24.0 197 50-264 204-411 (427)
229 KOG0279 G protein beta subunit 22.1 1.2E+03 0.025 26.4 20.0 212 34-264 98-313 (315)
230 KOG1446 Histone H3 (Lys4) meth 21.6 1.2E+03 0.026 26.5 26.9 88 37-128 13-102 (311)
231 KOG1036 Mitotic spindle checkp 20.8 1.3E+03 0.027 26.4 22.3 145 52-216 24-169 (323)
232 COG3292 Predicted periplasmic 20.7 4.7E+02 0.01 32.2 9.2 70 53-129 175-244 (671)
233 KOG1898 Splicing factor 3b, su 20.7 4.3E+02 0.0093 34.7 9.4 45 696-755 538-582 (1205)
234 KOG2395 Protein involved in va 20.6 1.3E+03 0.028 28.3 12.7 115 95-216 344-464 (644)
235 PF06388 DUF1075: Protein of u 20.5 74 0.0016 32.0 2.4 61 912-980 53-131 (146)
236 KOG0294 WD40 repeat-containing 20.1 1.3E+03 0.029 26.3 17.5 77 45-127 90-170 (362)
237 KOG0280 Uncharacterized conser 20.0 1.3E+03 0.028 26.2 12.2 110 53-172 133-252 (339)
No 1
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.1e-169 Score=1443.23 Aligned_cols=877 Identities=37% Similarity=0.535 Sum_probs=716.7
Q ss_pred ccccccccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeE
Q 002016 19 PSLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYV 98 (981)
Q Consensus 19 ~~~AlyedqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~v 98 (981)
+|+|+||||+||+|||++++| ++...|+.-.+..+++||+|++|+|++||++||+++|||.++.+....+.. ..
T Consensus 14 ~~aav~edq~gkfdwr~~~vG-~~k~~~~~~~t~~~rlivsT~~~vlAsL~~~tGei~WRqvl~~~~~~~~~~--~~--- 87 (910)
T KOG2103|consen 14 RAAAVYEDQAGKFDWRQQLVG-VKKVNFLVYDTKSKRLIVSTEKGVLASLNLRTGEIIWRQVLEPKTSGLGVP--LT--- 87 (910)
T ss_pred HHHHHHHHHhhhcchhhhccc-ceeEEEEeecCCCceEEEEeccchhheecccCCcEEEEEeccCCCcccCcc--ee---
Confidence 455999999999999999999 554556666677899999999999999999999999999998874332221 11
Q ss_pred EEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEeccCccee
Q 002016 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVE 178 (981)
Q Consensus 99 V~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~~~~~ 178 (981)
-++|.+|..+|+||.++|.+.|+..+..+ . +...+. ...+ +.++ +| .....|+.+|.+.......+
T Consensus 88 ~~iS~dg~~lr~wn~~~g~l~~~i~l~~g-~-~~~~~~------v~~~-i~v~-~g----~~~~~g~l~w~~~~~~~~~~ 153 (910)
T KOG2103|consen 88 NTISVDGRYLRSWNTNNGILDWEIELADG-F-KGLLLE------VNKG-IAVL-NG----HTRKFGELKWVESFSISIEE 153 (910)
T ss_pred EEEccCCcEEEeecCCCceeeeecccccc-c-ceeEEE------Eccc-eEEE-cc----eeccccceeehhhccccchh
Confidence 15788889999999999999999999876 3 222222 1112 2232 23 67789999999988765554
Q ss_pred eeEEEEeecCCeEEEEEecCCceeEEEEEECCCCcee-eeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeecCe
Q 002016 179 VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL-NHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 179 ~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~l-w~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
..|+..+...+.+|++++--.++..+++++..+|... |+.++..|+.-...|..+.+-+++|.+ |.+...|+..++
T Consensus 154 ~~q~~~~~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~~pw~~~~~c~~~k~~vl~~s~---g~l~s~di~~~~ 230 (910)
T KOG2103|consen 154 DLQDAKIYGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVLGPWFKVLSCSTDKEVVLVCSN---GTLISLDISSQK 230 (910)
T ss_pred HHHHhhhccCcEEEEEEEEecCCceEEEEEccCCcEecceeeeecCcccccccccccceEEEcCC---CCeEEEEEEeec
Confidence 4554445678899999887656668999999999999 888888886544456555566788875 578888887655
Q ss_pred eeEEEEeecccCCCCCCceEEeecCCcc-ceEEEecCcEEEEEEecCCcEEEEEeecCcceeeeeeeecCCceeEEEEEE
Q 002016 258 IAFQETHLSNLGEDSSGMVEILPSSLTG-MFTVKINNYKLFIRLTSEDKLEVVHKVDHETVVSDALVFSEGKEAFAVVEH 336 (981)
Q Consensus 258 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (981)
....+... +++-. ..| ...+..++|..++.+++.|..+++......-..+.+++..++..++.++.+
T Consensus 231 ~~~~q~~~-----------e~l~~-l~g~~i~~~g~~~~~~V~V~s~~~~~v~~~~~~e~~lsdsl~~~~d~e~~~si~~ 298 (910)
T KOG2103|consen 231 VQISQLLA-----------EILLP-LTGDLILLDGNKHTAMVSVNSSSNHWVYLFCRSEVDLSDSLEAGGDTEASKSIHP 298 (910)
T ss_pred cchhhhhh-----------hhhhc-cCCceEEecCCCceeEEEEecCCCeEEEeecccceeeccccccccccccceeeec
Confidence 21111111 11110 112 334444557789999877777775543222344555555666677766555
Q ss_pred cCceEEEEEeeeeeeccCccceeeeeccCCCceeEEEEEEEeecCCcceeEEEEEEcCCcEEEEECCeEe-EEeeccccc
Q 002016 337 GGSKVDITVKPGQDWNNNLVQESIEMDHQRGLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIV-WNREDALAS 415 (981)
Q Consensus 337 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~l~~~~d~~~~l~~~g~~~-W~ReEsLa~ 415 (981)
.++...-.++-++..-....+....++...+.|+++.. |..++++.+||++++++|+.+.++|||.+. |+|||+||+
T Consensus 299 ~ss~~~~~V~~vn~l~~~~~~~~~~~~~~l~~p~~F~~--~~~~~~e~~~~al~~~~d~~~~~~qng~i~~WsREEsLa~ 376 (910)
T KOG2103|consen 299 ESSYLFDQVFIVNNLYLVLDAQSILLEQKLSRPEVFGT--FEYFDREIGALALVVNDDHSLLFLQNGLILVWSREESLAN 376 (910)
T ss_pred ccchhhheeeehhhhhhcchhhhhhhhcccCcchhcce--eEEeccccceEEEEEecCceEEEEeCcceEEeehhhhhhh
Confidence 55432211222221111112223334444556644333 444555669999999999999999998876 999999999
Q ss_pred ceeEEEEeCCCCcccchhhhhhhhhh----hhHHHHHH-hhhcccccCChhhHHHHHh-------cc-ccccCccc-ccc
Q 002016 416 IIDVTTSELPVEKEGVSVAKVEHSLF----EWLKGHML-KLKGTLMLASPEDVAAIQA-------IR-LKSSEKSK-MTR 481 (981)
Q Consensus 416 i~~~~~~dlp~~~~~~~~~~le~e~~----~~~~~~~~-Rl~~~~~~~~~~~~~~l~~-------~~-~~~~~~~~-~~r 481 (981)
+++++|+|||++++ ++.+|.|+. +++.+||+ |+.+ |+.+|++ .+ ++++.+++ +.|
T Consensus 377 vvd~~~vdlpLs~~---~~~~e~e~~~~~~~~l~~afl~R~~t--------q~~ql~~~~~h~~~~~~~~s~~~n~~l~r 445 (910)
T KOG2103|consen 377 VVDVEMVDLPLSRD---QGLLEDEFEDKESNSLWGAFLKRLTT--------QFNQLINLLKHNQGLPTPLSALKNKDLSR 445 (910)
T ss_pred hccceeeccccccc---hhhHHHHhhccccchHHHHHHHHHHH--------HHHHHHHHHHhhhccCCCcccccccceee
Confidence 99999999999998 667777763 37999999 9999 7777665 22 44555666 999
Q ss_pred cCCCceeEEEEEeCCceEEEEECCCCcEEEEEecCCCC-CCCCccccceeecccCccccCCCCCeEEEEEecCCCCCCCc
Q 002016 482 DHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSE-ACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPA 560 (981)
Q Consensus 482 D~fGf~K~iv~~T~~Gkl~alds~~G~i~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~~~ 560 (981)
|.||||||||++|+.|||||||+.+|+++|++.+++.. +++.+ .+++|+..+||+ .++.+.|++.++ -++++
T Consensus 446 D~Fgl~K~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~~~~e~v--~l~vqr~~~H~~---~d~~~svlf~~k--~s~~g 518 (910)
T KOG2103|consen 446 DKFGLRKMIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQQNPEGV--KLFVQRTTAHFP---LDEDPSVLFVHK--GSGNG 518 (910)
T ss_pred cccCceeEEEEEecCceEEEEEcCCCeEEEEEecCcccCCcccc--eEEEEeccccCC---CCCCCeEEEEec--cCCCe
Confidence 99999999999999999999999999999999998654 33444 677888888987 666777776654 46889
Q ss_pred EEEEEEccCCceecccccccceeEEeeecccCCccceEEEEEcCCCceEEccCChhhhhhhhccccceEEEEEEccCCeE
Q 002016 561 ILSFVDTYTGKELNSFDLVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGII 640 (981)
Q Consensus 561 ~~~~~~~~tG~~~~~~~l~~~~~~~~~lp~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~i 640 (981)
+++.|||++|++++...++++++|.++||.++.++.+.++++|+.+.+++||.+.+....++++++++|+|++|.++|.|
T Consensus 519 vly~fn~~~Gkv~s~~~l~~~v~q~sllp~~~~d~~~~illidd~~~v~l~P~~~~~l~~~~~~a~s~y~Yt~e~~~~~i 598 (910)
T KOG2103|consen 519 VLYEFNPITGKVISRSPLDYRVKQLSLLPVTEHDHQYLILLIDDHLKVKLYPGTSTDLEIVANEASSIYLYTVEADTGGI 598 (910)
T ss_pred EEEEEecCcceeeecCccCCceeeEEeccccccccceeEEEecccceEEecCCCcccchhhhhccCccEEEEEEcccCcE
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeecCCCccccccceeeeEeEEEEccCCcceEEEEeecCCCCceecceEecCCCceEecccCCceEEEEEecCCCC
Q 002016 641 KGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVAPKAS 720 (981)
Q Consensus 641 ~G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~e~Iv~~~~~~~~e~v~S~g~vlgdrsVlYKYLNPNl~~v~t~~~~~~ 720 (981)
+||.++.+ ++..++|+.++|++.|+||++..|+++|+|||+|||||||+||||||||||+||+|.+++
T Consensus 599 ~Gy~i~~~----------lT~~~~W~~~l~~e~e~IIav~~r~p~e~VhSqGrVlgdrsVlYKYlnPNL~A~~t~~~~-- 666 (910)
T KOG2103|consen 599 YGYIIKAD----------LTTTQTWKKNLPSEKEKIIAVKGRNPNEHVHSQGRVLGDRSVLYKYLNPNLAAVATANPD-- 666 (910)
T ss_pred EEEEEecc----------cceeeeeeeccCchhheeeEeccCCcchheeecceecccceeeeeccCcchhheeecCcC--
Confidence 99999844 578899999999878999999999999999999999999999999999999999999983
Q ss_pred CCcCCCCCCCcEEEEEEEEceeceEEEEEeecCCCCCeeEEEecCeEEEEEecccceeeEEEEEEeccCCccCchhhhhh
Q 002016 721 GHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKL 800 (981)
Q Consensus 721 ~~~~~~~~~~~~l~v~liD~VtG~il~s~~h~~~~~pi~~v~~ENWivYsy~~~~~~~~ei~v~ELyE~~~~~~~~~~~~ 800 (981)
.+++ ..+||||+|||+|+|+++|+++.+|||+||||||+||||||++.+|+|++|+||||+..+++|.
T Consensus 667 -----~~~~---~~~~LiD~VTG~Ivht~~h~k~~~PvhiVfSENWvvYsYfs~k~~rteltvvELYEgs~~~nk~---- 734 (910)
T KOG2103|consen 667 -----DHHE---TFLYLIDTVTGSIVHTQSHQKARGPVHIVFSENWVVYSYFSDKARRTELTVVELYEGSEQDNKL---- 734 (910)
T ss_pred -----Ccee---EEEEEEeeeeeEEEEeeehhhhcCceEEEEecceEEEEEeccccccceEEEEEEecCCcccccc----
Confidence 2222 1569999999999999999999999999999999999999999999999999999999776641
Q ss_pred hcccccCcccccCCCCCc-e-eEEEEEeecccccceEEeeeecCccccccEEEEecCCcEEEeeccccCCCCCCCCCccc
Q 002016 801 VLGKHNLTAPVSSYSRPE-I-TTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINPTQAE 878 (981)
Q Consensus 801 ~~~~~~~t~~~Ss~~~~~-~-~v~~qsyi~p~~I~~m~vT~T~~GIT~K~iL~~l~sgqI~~ipk~~LdpRRp~~pt~~~ 878 (981)
+.. |+|++.|+ | +|.+||||||+.|++|++|.|++|||+|+||+||+||||++|||+|||||||..||+++
T Consensus 735 ------s~~-~~sl~ap~lp~~v~tqsYIfp~~I~tm~vT~Te~GITsk~iLigl~sgqI~~ipk~LLdprRp~~pte~~ 807 (910)
T KOG2103|consen 735 ------SNV-FDSLSAPPLPGQVQTQSYIFPQIIKTMSVTITEQGITSKHILIGLPSGQILEIPKALLDPRRPPAPTEKK 807 (910)
T ss_pred ------ccc-hhcccCCCCCchhheeeeechhheeeeeeeecccCcchhheEEecCCCCcccchHHhhCCCCCCCcchhh
Confidence 233 88887654 5 89999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCcCCcccCCCCCccceEEeEEeccccCeEeccCCCcceeEEEEEcCeEEEEEecCCCccccCCCCCChhhHHHHHH
Q 002016 879 KEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIV 958 (981)
Q Consensus 879 ~Eegl~pY~p~lp~~~~~~ith~~~v~~~~~I~t~Pt~LESTslV~a~G~DiF~Trv~PS~~FDiL~~~Fnk~~L~~ti~ 958 (981)
+|||+|||+|+||++++.+|||||+|.++|+|+|+||+|||||||||||+|+||||++||++||+|++||||.+|++|++
T Consensus 808 rEe~~IPY~P~ipi~~e~~InynqtV~~~rgI~TaPS~LESTtlV~ayGlDlF~TR~aPSktfD~LkddFdy~ll~itlf 887 (910)
T KOG2103|consen 808 REEMAIPYTPEIPINDEFIINYNQTVLRVRGIYTAPSGLESTTLVLAYGLDLFFTRLAPSKTFDLLKDDFDYVLLSITLF 887 (910)
T ss_pred hhccCCCCCCccccChhhhccccceeecccceeecCCCccceEEEeecCcceEEEeecCCccccccccccchhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHhHHHHhhcC
Q 002016 959 ALVAAIFVTWVLSEKKELREKWR 981 (981)
Q Consensus 959 ~L~~~~~v~~~~~~~K~L~~~W~ 981 (981)
||++|+|++||++++|+||+||+
T Consensus 888 gLv~atyitk~La~~K~L~~~W~ 910 (910)
T KOG2103|consen 888 GLVVATYITKPLASKKLLKSKWR 910 (910)
T ss_pred HHHHhhhehhhhhhhhhhhhhcC
Confidence 99999999999999999999996
No 2
>PF07774 DUF1620: Protein of unknown function (DUF1620); InterPro: IPR011678 These sequences are mainly derived from predicted eukaryotic proteins. The region in question lies towards the C terminus of these large proteins and is approximately 300 amino acid residues long.
Probab=100.00 E-value=4.5e-71 Score=579.07 Aligned_cols=210 Identities=49% Similarity=0.858 Sum_probs=198.5
Q ss_pred EecCeEEEEEecccceeeEEEEEEeccCCccCchhhhhhhcccccCcccccCC----CCCceeEEEEEeecccccceEEe
Q 002016 762 LSENWVVYHYFNLRAHRYEMSVTEIYDQSRAENKDVLKLVLGKHNLTAPVSSY----SRPEITTKSQTYFFTHSVKAVAV 837 (981)
Q Consensus 762 ~~ENWivYsy~~~~~~~~ei~v~ELyE~~~~~~~~~~~~~~~~~~~t~~~Ss~----~~~~~~v~~qsyi~p~~I~~m~v 837 (981)
|+|||+||||||.+.+|+||+|+||||+..++++... .. .+||+ ..+.|+|++|+|+||++|++|++
T Consensus 1 ~~ENwivysy~~~~~~~~~i~vvELye~~~~~~~~~~--------~~-~~ss~~~~~~~~~p~v~~qsyi~p~~I~~l~v 71 (217)
T PF07774_consen 1 FSENWIVYSYFNSKSRRQEIVVVELYESKEPNNRTSF--------IS-SFSSFNSSASSPPPIVLSQSYIFPEPIKALGV 71 (217)
T ss_pred CcccEEEEEEEcCCCceEEEEEEEeecCCCcCCCccc--------cc-cccccccccCCCCcEEEEEEEccCCccceEEe
Confidence 6899999999999999999999999999977765322 11 25655 66778999999999999999999
Q ss_pred eeecCccccccEEEEecCCcEEEeeccccCCCCCC--CCCccccccCC-cCCcccCCCCCccceEEeEEeccccCeEecc
Q 002016 838 TSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSI--NPTQAEKEEGI-IPLADSLPIIPQSYVTHSLKVEGLRGILTVP 914 (981)
Q Consensus 838 T~T~~GIT~K~iL~~l~sgqI~~ipk~~LdpRRp~--~pt~~~~Eegl-~pY~p~lp~~~~~~ith~~~v~~~~~I~t~P 914 (981)
|+|++|||+|+||++|++|||++|||++||||||. +||++|+|||+ +||+|+||++|+.+|||+++|.++++|.|+|
T Consensus 72 T~T~~GIT~K~iL~~~~~gqi~~ipk~~LdpRRp~~~~~t~~~~ee~ll~pY~p~lp~~~~~~ish~~~v~~~~~I~t~p 151 (217)
T PF07774_consen 72 TRTKQGITSKSILIGLESGQIVSIPKRLLDPRRPVGRDPTPEEQEEGLLIPYSPLLPIDPQSVISHNQQVAGIRKIITSP 151 (217)
T ss_pred eeccccchhhhhheEcCCCCEEEeeHHhcCCCCCCCCCCCHHHHHhcCcCCCccccCCCCceEEEEEEEeeccceEEECC
Confidence 99999999999999999999999999999999995 68999999998 9999999999999999999999999999999
Q ss_pred CCCcceeEEEEEcCeEEEEEecCCCccccCCCCCChhhHHHHHHHHHHHHHhhHHHHHhHHHHhhc
Q 002016 915 AKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKW 980 (981)
Q Consensus 915 t~LESTslV~a~G~DiF~Trv~PS~~FDiL~~~Fnk~~L~~ti~~L~~~~~v~~~~~~~K~L~~~W 980 (981)
|+|||||||||||+|+||||++||++||+|++||||++|++|+++|+++++++|||++||+||++|
T Consensus 152 t~LESTslv~a~G~DlF~Tri~PS~~FD~L~~dFnk~~L~~ti~~L~v~~~v~k~~~~~K~L~~~W 217 (217)
T PF07774_consen 152 TNLESTSLVFAYGLDLFCTRIAPSKSFDLLSEDFNKALLILTIIALFVGTLVTKPLVRRKQLNQKW 217 (217)
T ss_pred CCcccccEEEEECCceEEEEecCCccccccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999
No 3
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.87 E-value=1.4e-19 Score=209.47 Aligned_cols=214 Identities=20% Similarity=0.332 Sum_probs=150.2
Q ss_pred cccEeEEEeccCceeeeee--eecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcc---------eeeeeeeecC
Q 002016 28 VGLMDWHQQYIGKVKHAVF--HTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDV---------VDGIDIALGK 96 (981)
Q Consensus 28 vG~~dW~~~~vG~~~~~~f--~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~---------i~~l~~~~~~ 96 (981)
.++..|+..+ |......+ ..|...+++||+++.+|.|+|+|++||+++|++.+..... +.+. +...+
T Consensus 43 ~~~~~W~~~~-g~g~~~~~~~~sPvv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 120 (394)
T PRK11138 43 TPTTVWSTSV-GDGVGDYYSRLHPAVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGG-VTVAG 120 (394)
T ss_pred CcceeeEEEc-CCCCccceeeeccEEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccc-cEEEC
Confidence 5778999886 43221111 2466779999999999999999999999999999875210 1111 34566
Q ss_pred eEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCc
Q 002016 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE 175 (981)
Q Consensus 97 ~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~ 175 (981)
+.|++++.++.++|+|++||+++|+.++.++.. +.+++ .++.|++. .+|.|+|||++||+++|+++...+
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--ssP~v-------~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 191 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTKVAGEAL--SRPVV-------SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVP 191 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCcccccCCCcee--cCCEE-------ECCEEEEECCCCEEEEEEccCCCEeeeecCCCC
Confidence 777777777799999999999999999876543 22233 25677776 589999999999999999987543
Q ss_pred ceeee-EEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCC---------ccCceEEEcCcEEEEEECCC
Q 002016 176 SVEVQ-QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG---------FVGDVALVSSDTLVTLDTTR 245 (981)
Q Consensus 176 ~~~~~-~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~---------~~~~~~~vg~~~lv~~d~~~ 245 (981)
..... ...+...++.+|+.+..| .++|+|+++|+.+|+..+..+.+ +...+++.+ +.+++.+ .+
T Consensus 192 ~~~~~~~~sP~v~~~~v~~~~~~g----~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~-~~vy~~~-~~ 265 (394)
T PRK11138 192 SLTLRGESAPATAFGGAIVGGDNG----RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVG-GVVYALA-YN 265 (394)
T ss_pred cccccCCCCCEEECCEEEEEcCCC----EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEEC-CEEEEEE-cC
Confidence 22110 111233567788755444 69999999999999987765532 112334434 4444444 35
Q ss_pred CeEEEEEeecCee
Q 002016 246 SILVTVSFKNRKI 258 (981)
Q Consensus 246 g~L~v~~L~sg~~ 258 (981)
|.++++++.+|++
T Consensus 266 g~l~ald~~tG~~ 278 (394)
T PRK11138 266 GNLVALDLRSGQI 278 (394)
T ss_pred CeEEEEECCCCCE
Confidence 8999999999984
No 4
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.83 E-value=1e-17 Score=192.64 Aligned_cols=234 Identities=18% Similarity=0.313 Sum_probs=160.9
Q ss_pred HHHHHHHHhccCCc-----------cccccccccccEeEEEeccCceee-e-eeeecccCCCEEEEEcCCCEEEEEECCC
Q 002016 6 IILTLLFLSSCTIP-----------SLSLYEDQVGLMDWHQQYIGKVKH-A-VFHTQKTGRKRVVVSTEENVIASLDLRH 72 (981)
Q Consensus 6 ~l~~~~~l~~~~~~-----------~~AlyedqvG~~dW~~~~vG~~~~-~-~f~~~~~~~~~VyvaT~~g~L~ALd~~t 72 (981)
+++.+.+|++|+.- ...+..++.|+..|++++ |.... . .-..|...+++||+++.+|.|+|+|++|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~~~~~~~~~~~p~v~~~~v~v~~~~g~v~a~d~~t 84 (377)
T TIGR03300 6 VIALAALLSGCSWFSSKDEEPQPAELPEFQPTVKVDQVWSASV-GDGVGHYYLRLQPAVAGGKVYAADADGTVVALDAET 84 (377)
T ss_pred HHHHHHHHhcccCCCCCCCcCCCCCcccccccCcceeeeEEEc-CCCcCccccccceEEECCEEEEECCCCeEEEEEccC
Confidence 34555567777531 123345678999999987 44321 1 1124666789999999999999999999
Q ss_pred CccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-
Q 002016 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS- 151 (981)
Q Consensus 73 G~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~- 151 (981)
|+++|++.+... +.+. ++.+++.+++++.++.|+|||++||+++|+....++.. ..+.+ .++.|++.
T Consensus 85 G~~~W~~~~~~~--~~~~-p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~--~~p~v-------~~~~v~v~~ 152 (377)
T TIGR03300 85 GKRLWRVDLDER--LSGG-VGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL--SPPLV-------ANGLVVVRT 152 (377)
T ss_pred CcEeeeecCCCC--cccc-eEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee--cCCEE-------ECCEEEEEC
Confidence 999999998765 2222 35667778887767799999999999999998876543 22222 25567775
Q ss_pred eCCEEEEEECCCCcEeEEEeccCcceeee-EEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCc----
Q 002016 152 SKGCLHAVSSIDGEILWTRDFAAESVEVQ-QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGF---- 226 (981)
Q Consensus 152 ~~g~l~aLd~~tG~~~W~~~~~~~~~~~~-~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~---- 226 (981)
.+|.|+++|.++|+.+|+++...+..... ...+...++.+|+ +..++ +++++|+++|+.+|+..+..+.+.
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~g---~v~ald~~tG~~~W~~~~~~~~g~~~~~ 228 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAGG---KLVALDLQTGQPLWEQRVALPKGRTELE 228 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCCC---EEEEEEccCCCEeeeeccccCCCCCchh
Confidence 68999999999999999998765432110 0111234566665 43332 699999999999999876554321
Q ss_pred -----cCceEEEcCcEEEEEECCCCeEEEEEeecCee
Q 002016 227 -----VGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 227 -----~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
...+ ++.++.+++.+ ..|.++++++++|++
T Consensus 229 ~~~~~~~~p-~~~~~~vy~~~-~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 229 RLVDVDGDP-VVDGGQVYAVS-YQGRVAALDLRSGRV 263 (377)
T ss_pred hhhccCCcc-EEECCEEEEEE-cCCEEEEEECCCCcE
Confidence 1223 33445555444 357899999999874
No 5
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.76 E-value=2.4e-16 Score=182.58 Aligned_cols=213 Identities=15% Similarity=0.254 Sum_probs=146.7
Q ss_pred cccccEeEEEeccCceee-------eeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeE
Q 002016 26 DQVGLMDWHQQYIGKVKH-------AVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYV 98 (981)
Q Consensus 26 dqvG~~dW~~~~vG~~~~-------~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~v 98 (981)
.+.|+..|++++-+.... .....|...+++||+++.+|.|+|||++||+++|+..+... +... +...++.
T Consensus 86 ~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~ss-P~v~~~~ 162 (394)
T PRK11138 86 ADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGE--ALSR-PVVSDGL 162 (394)
T ss_pred CCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCCc--eecC-CEEECCE
Confidence 346999999987542110 01123556789999999999999999999999999988654 2222 3455667
Q ss_pred EEEEccCCEEEEEeCCCCcEeEEEeccCcccc---CCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccC
Q 002016 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS---KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAA 174 (981)
Q Consensus 99 V~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s---~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~ 174 (981)
++++..++.++|+|++||+++|+.....+... ...+.+ . ++.|++. .+|.++++|.++|+++|+.+...
T Consensus 163 v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v------~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 163 VLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT------A-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred EEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE------E-CCEEEEEcCCCEEEEEEccCChhhheecccc
Confidence 77776667999999999999999987643220 112222 2 4456665 69999999999999999986543
Q ss_pred cc--eeee-----EEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCe
Q 002016 175 ES--VEVQ-----QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSI 247 (981)
Q Consensus 175 ~~--~~~~-----~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~ 247 (981)
+. .... ...+...++.+|+.+..| .++|+|+.+|+.+|+.....+. .+. +.++.+++.+ .+|.
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g----~l~ald~~tG~~~W~~~~~~~~----~~~-~~~~~vy~~~-~~g~ 305 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYNG----NLVALDLRSGQIVWKREYGSVN----DFA-VDGGRIYLVD-QNDR 305 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcCC----eEEEEECCCCCEEEeecCCCcc----CcE-EECCEEEEEc-CCCe
Confidence 21 0000 011234688999877655 5999999999999998654322 223 3344444443 3688
Q ss_pred EEEEEeecCee
Q 002016 248 LVTVSFKNRKI 258 (981)
Q Consensus 248 L~v~~L~sg~~ 258 (981)
+++++..+|++
T Consensus 306 l~ald~~tG~~ 316 (394)
T PRK11138 306 VYALDTRGGVE 316 (394)
T ss_pred EEEEECCCCcE
Confidence 99999988874
No 6
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.73 E-value=7.8e-16 Score=164.46 Aligned_cols=219 Identities=18% Similarity=0.276 Sum_probs=145.4
Q ss_pred ccccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEE
Q 002016 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS 102 (981)
Q Consensus 23 lyedqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs 102 (981)
.++.+.|+..|+.++ +.........+...++.+|+++.++.|+|+|++||+++|++.++.+ +...+...++.+++.+
T Consensus 7 ~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~~~~~~~v~v~~ 83 (238)
T PF13360_consen 7 ALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAPVVDGGRVYVGT 83 (238)
T ss_dssp EEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGEEEETTEEEEEE
T ss_pred EEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccceeeeccccccccc
Confidence 345568999999988 4322111212333688999999999999999999999999999655 2222223455555545
Q ss_pred ccCCEEEEEeCCCCcEeEEE-eccCccccCCceeecccccccCCcEEEEEe-CCEEEEEECCCCcEeEEEeccCcce-ee
Q 002016 103 SDGSTLRAWNLPDGQMVWES-FLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESV-EV 179 (981)
Q Consensus 103 ~~g~~V~A~da~tG~llWe~-~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~-~g~l~aLd~~tG~~~W~~~~~~~~~-~~ 179 (981)
. ++.++++|+.||+++|+. ....+.. . ..........++.+++.. +|.|+++|++||+++|++....+.. ..
T Consensus 84 ~-~~~l~~~d~~tG~~~W~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~ 158 (238)
T PF13360_consen 84 S-DGSLYALDAKTGKVLWSIYLTSSPPA-G---VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSP 158 (238)
T ss_dssp T-TSEEEEEETTTSCEEEEEEE-SSCTC-S---TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--
T ss_pred c-eeeeEecccCCcceeeeecccccccc-c---cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcc
Confidence 4 459999999999999995 4432222 0 000001111255677765 9999999999999999998855331 11
Q ss_pred e------EEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEe
Q 002016 180 Q------QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSF 253 (981)
Q Consensus 180 ~------~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L 253 (981)
. ...+...++.+|+.+..|. +.++|..+|+.+|+..... .. ..+...++.+++.+ ..+.++++|+
T Consensus 159 ~~~~~~~~~~~~~~~~~v~~~~~~g~----~~~~d~~tg~~~w~~~~~~---~~-~~~~~~~~~l~~~~-~~~~l~~~d~ 229 (238)
T PF13360_consen 159 ISSFSDINGSPVISDGRVYVSSGDGR----VVAVDLATGEKLWSKPISG---IY-SLPSVDGGTLYVTS-SDGRLYALDL 229 (238)
T ss_dssp EEEETTEEEEEECCTTEEEEECCTSS----EEEEETTTTEEEEEECSS----EC-ECEECCCTEEEEEE-TTTEEEEEET
T ss_pred eeeecccccceEEECCEEEEEcCCCe----EEEEECCCCCEEEEecCCC---cc-CCceeeCCEEEEEe-CCCEEEEEEC
Confidence 0 1112345678888766663 8888999999999764222 11 22344567777777 5789999999
Q ss_pred ecCee
Q 002016 254 KNRKI 258 (981)
Q Consensus 254 ~sg~~ 258 (981)
.+|++
T Consensus 230 ~tG~~ 234 (238)
T PF13360_consen 230 KTGKV 234 (238)
T ss_dssp TTTEE
T ss_pred CCCCE
Confidence 99984
No 7
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.69 E-value=1.3e-14 Score=166.88 Aligned_cols=210 Identities=20% Similarity=0.307 Sum_probs=145.5
Q ss_pred ccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEcc
Q 002016 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD 104 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~ 104 (981)
+.+.|+..|++++-+... ..|..+++++|+++.+|.|+|||++||+++|+..+... +... +...++.++++..
T Consensus 81 d~~tG~~~W~~~~~~~~~----~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~--~~~~-p~v~~~~v~v~~~ 153 (377)
T TIGR03300 81 DAETGKRLWRVDLDERLS----GGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSE--VLSP-PLVANGLVVVRTN 153 (377)
T ss_pred EccCCcEeeeecCCCCcc----cceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCce--eecC-CEEECCEEEEECC
Confidence 446899999998855432 23556788999999999999999999999999987654 2222 2345567777666
Q ss_pred CCEEEEEeCCCCcEeEEEeccCcccc---CCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcc--ee
Q 002016 105 GSTLRAWNLPDGQMVWESFLRGSKHS---KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES--VE 178 (981)
Q Consensus 105 g~~V~A~da~tG~llWe~~~~~~~~s---~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~--~~ 178 (981)
++.+++||+++|+.+|+.....+... ...+.+ .++.+++. .+|.++++|+++|+.+|+.....+. ..
T Consensus 154 ~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-------~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~ 226 (377)
T TIGR03300 154 DGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-------ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTE 226 (377)
T ss_pred CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE-------ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCc
Confidence 67999999999999999987654320 111122 24556665 5799999999999999997654221 00
Q ss_pred ee-----EEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEe
Q 002016 179 VQ-----QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSF 253 (981)
Q Consensus 179 ~~-----~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L 253 (981)
.. ...+...++.+|+.+..| .++|+|++||+.+|+...... ..+. +.++.+++.+ .+|.+++++.
T Consensus 227 ~~~~~~~~~~p~~~~~~vy~~~~~g----~l~a~d~~tG~~~W~~~~~~~----~~p~-~~~~~vyv~~-~~G~l~~~d~ 296 (377)
T TIGR03300 227 LERLVDVDGDPVVDGGQVYAVSYQG----RVAALDLRSGRVLWKRDASSY----QGPA-VDDNRLYVTD-ADGVVVALDR 296 (377)
T ss_pred hhhhhccCCccEEECCEEEEEEcCC----EEEEEECCCCcEEEeeccCCc----cCce-EeCCEEEEEC-CCCeEEEEEC
Confidence 00 011224678899877655 599999999999999863221 1222 3334444443 4688999998
Q ss_pred ecCee
Q 002016 254 KNRKI 258 (981)
Q Consensus 254 ~sg~~ 258 (981)
.+|++
T Consensus 297 ~tG~~ 301 (377)
T TIGR03300 297 RSGSE 301 (377)
T ss_pred CCCcE
Confidence 88874
No 8
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.62 E-value=2.8e-14 Score=169.81 Aligned_cols=222 Identities=14% Similarity=0.158 Sum_probs=142.3
Q ss_pred ccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCc-----ceeeeeeeecC-eEEE
Q 002016 27 QVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-----VVDGIDIALGK-YVIT 100 (981)
Q Consensus 27 qvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-----~i~~l~~~~~~-~vV~ 100 (981)
+.+++.|+.+. |.. ......|...+++||+++.+|.|+|||++||+++|++.+.... .+..-.++..+ +.|+
T Consensus 37 ~~~~~~W~~~~-~~~-~~~~~sPvv~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~ 114 (488)
T cd00216 37 KKLKVAWTFST-GDE-RGQEGTPLVVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVF 114 (488)
T ss_pred hcceeeEEEEC-CCC-CCcccCCEEECCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEE
Confidence 45789999887 320 0112246667899999999999999999999999999886541 00000113334 7888
Q ss_pred EEccCCEEEEEeCCCCcEeEEEeccCcc-----ccCCceeecccccccCCcEEEEEe----------CCEEEEEECCCCc
Q 002016 101 LSSDGSTLRAWNLPDGQMVWESFLRGSK-----HSKPLLLVPTNLKVDKDSLILVSS----------KGCLHAVSSIDGE 165 (981)
Q Consensus 101 Vs~~g~~V~A~da~tG~llWe~~~~~~~-----~s~~~~~v~~~~~~~~~~~V~V~~----------~g~l~aLd~~tG~ 165 (981)
+++.++.|+|+|++||+++|++....+. . .+.+.+ .++.|++.+ +|.|+|||++||+
T Consensus 115 v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i-~ssP~v-------~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~ 186 (488)
T cd00216 115 FGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTM-TGAPTI-------VKKLVIIGSSGAEFFACGVRGALRAYDVETGK 186 (488)
T ss_pred EecCCCeEEEEECCCCCEeeeecCCCCcCcceEe-cCCCEE-------ECCEEEEeccccccccCCCCcEEEEEECCCCc
Confidence 8777789999999999999999987652 1 112222 246666642 5789999999999
Q ss_pred EeEEEeccCcc-eeee--------------EE--EEee--cCCeEEEEEecCC--------------ceeEEEEEECCCC
Q 002016 166 ILWTRDFAAES-VEVQ--------------QV--IQLD--ESDQIYVVGYAGS--------------SQFHAYQINAMNG 212 (981)
Q Consensus 166 ~~W~~~~~~~~-~~~~--------------~v--v~s~--~~~~Vyvvg~~g~--------------~~~~v~aLd~~tG 212 (981)
++|+++...+. .... .+ .++. ..+.||+.+..+. ....++|||++||
T Consensus 187 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG 266 (488)
T cd00216 187 LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTG 266 (488)
T ss_pred eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCC
Confidence 99999774221 0000 00 0111 3577887543320 1236999999999
Q ss_pred ceeeeeeeeccC----CccCceEEE-----cCc--EEEEEECCCCeEEEEEeecCee
Q 002016 213 ELLNHETAAFSG----GFVGDVALV-----SSD--TLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 213 ~~lw~~~v~~p~----~~~~~~~~v-----g~~--~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
+++|+++...+. .......+. .+. .++++-..+|.+++++.++|+.
T Consensus 267 ~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~ 323 (488)
T cd00216 267 KVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL 323 (488)
T ss_pred CEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcE
Confidence 999999764331 111112221 111 1233333568899999999873
No 9
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=99.62 E-value=3.8e-14 Score=168.71 Aligned_cols=230 Identities=10% Similarity=0.152 Sum_probs=145.0
Q ss_pred ccccccEeEEEeccCce--eeeeeeecccCCCEEEEEcC---------CCEEEEEECCCCccceEEEcCCCcc-------
Q 002016 25 EDQVGLMDWHQQYIGKV--KHAVFHTQKTGRKRVVVSTE---------ENVIASLDLRHGEIFWRHVLGINDV------- 86 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~--~~~~f~~~~~~~~~VyvaT~---------~g~L~ALd~~tG~ivWR~~l~~~~~------- 86 (981)
+.+.|+..|++++-+.. ....-..|...++.+|+++. .|.|+|||++||+++|++.+..+..
T Consensus 126 D~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~ 205 (488)
T cd00216 126 DAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWG 205 (488)
T ss_pred ECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCC
Confidence 46689999999885542 11112235556788999874 5789999999999999998853210
Q ss_pred ------------eeeeeeee--cCeEEEEEccCC------------------EEEEEeCCCCcEeEEEeccCccc----c
Q 002016 87 ------------VDGIDIAL--GKYVITLSSDGS------------------TLRAWNLPDGQMVWESFLRGSKH----S 130 (981)
Q Consensus 87 ------------i~~l~~~~--~~~vV~Vs~~g~------------------~V~A~da~tG~llWe~~~~~~~~----s 130 (981)
+-.. ++. .+++|+++..++ .|+|+|++||+++|+++...... .
T Consensus 206 ~~~~~~~~~g~~vw~~-pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~ 284 (488)
T cd00216 206 PDRQMWGPGGGTSWAS-PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDG 284 (488)
T ss_pred CCcceecCCCCCccCC-eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCccccc
Confidence 0011 222 357888865332 79999999999999998653311 0
Q ss_pred -CCceeecccccccCC--cEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEec---------
Q 002016 131 -KPLLLVPTNLKVDKD--SLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYA--------- 197 (981)
Q Consensus 131 -~~~~~v~~~~~~~~~--~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~--------- 197 (981)
.++.+.... ..+.+ ..|++. .+|.|+|||++||+++|+.+...... +..++.||+.+..
T Consensus 285 ~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~-------~~~~~~vyv~~~~~~~~~~~~~ 356 (488)
T cd00216 285 PNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPM-------AYDPGLVYLGAFHIPLGLPPQK 356 (488)
T ss_pred CCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeecccc-------ccCCceEEEccccccccCcccc
Confidence 111111100 01111 135554 48999999999999999987542111 1244777774321
Q ss_pred -----CCceeEEEEEECCCCceeeeeeeecc-------CCccCceEEEcCcEEEEEECCCCeEEEEEeecCeeeEEEEee
Q 002016 198 -----GSSQFHAYQINAMNGELLNHETAAFS-------GGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (981)
Q Consensus 198 -----g~~~~~v~aLd~~tG~~lw~~~v~~p-------~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~~~~~~~l 265 (981)
......++|||+.||+.+|+...... .......+.+.++.+++.+ .+|.|++++.++|++ .-+..+
T Consensus 357 ~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~~-lW~~~~ 434 (488)
T cd00216 357 KKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGKE-LWKFRT 434 (488)
T ss_pred cCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC-CCCeEEEEECCCCce-eeEEEC
Confidence 11235799999999999999976511 0111223334556665555 468999999999984 333443
No 10
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.58 E-value=1.7e-13 Score=146.43 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=119.0
Q ss_pred CCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeeccc
Q 002016 61 EENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTN 139 (981)
Q Consensus 61 ~~g~L~ALd~~tG~ivWR~~l~~~~-~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~ 139 (981)
++|.|.|+|+++|+++|+..+..+. ..... +...++.++++..++.+++||+.||+++|+..+..+.. ..+..
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~--~~~~~--- 74 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS--GAPVV--- 74 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG--SGEEE---
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc--ceeee---
Confidence 4789999999999999999995431 11111 23356666666556799999999999999999966543 22222
Q ss_pred ccccCCcEEEEE-eCCEEEEEECCCCcEeEEE-eccCccee-eeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceee
Q 002016 140 LKVDKDSLILVS-SKGCLHAVSSIDGEILWTR-DFAAESVE-VQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (981)
Q Consensus 140 ~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~-~~~~~~~~-~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw 216 (981)
.++.+++. .++.++++|..||+++|+. ....+... .........++.+|+....| .++++|++||+++|
T Consensus 75 ----~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~l~~~d~~tG~~~w 146 (238)
T PF13360_consen 75 ----DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSG----KLVALDPKTGKLLW 146 (238)
T ss_dssp ----ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCS----EEEEEETTTTEEEE
T ss_pred ----cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccC----cEEEEecCCCcEEE
Confidence 25667776 4889999999999999994 54322211 01111123567777654344 69999999999999
Q ss_pred eeeeeccCCcc---------CceEEEcCcEEEEEECCCCeEEEEEeecCee
Q 002016 217 HETAAFSGGFV---------GDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 217 ~~~v~~p~~~~---------~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
+..+..+.... +.+++ .++.+...+ ..+.+..+++.+|+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~-~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 147 KYPVGEPRGSSPISSFSDINGSPVI-SDGRVYVSS-GDGRVVAVDLATGEK 195 (238)
T ss_dssp EEESSTT-SS--EEEETTEEEEEEC-CTTEEEEEC-CTSSEEEEETTTTEE
T ss_pred EeecCCCCCCcceeeecccccceEE-ECCEEEEEc-CCCeEEEEECCCCCE
Confidence 99886544221 23333 333443343 345555558888873
No 11
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.48 E-value=2.5e-12 Score=153.98 Aligned_cols=219 Identities=16% Similarity=0.187 Sum_probs=139.2
Q ss_pred ccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceee--------eeeeecCeEEE
Q 002016 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDG--------IDIALGKYVIT 100 (981)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~--------l~~~~~~~vV~ 100 (981)
.+..|++++ |... ....+|...+++||+++..|.|+|||++||+++|++....+..... -.++..++.|+
T Consensus 47 L~~~W~~~~-g~~~-g~~stPvv~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~ 124 (527)
T TIGR03075 47 LQPAWTFSL-GKLR-GQESQPLVVDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVF 124 (527)
T ss_pred ceEEEEEEC-CCCC-CcccCCEEECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEE
Confidence 457899887 4321 1123466678999999999999999999999999998754321110 00234556777
Q ss_pred EEccCCEEEEEeCCCCcEeEEEeccCccc---cCCceeecccccccCCcEEEEEe-------CCEEEEEECCCCcEeEEE
Q 002016 101 LSSDGSTLRAWNLPDGQMVWESFLRGSKH---SKPLLLVPTNLKVDKDSLILVSS-------KGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 101 Vs~~g~~V~A~da~tG~llWe~~~~~~~~---s~~~~~v~~~~~~~~~~~V~V~~-------~g~l~aLd~~tG~~~W~~ 170 (981)
+++.++.|+|+|+.||+++|+........ ..+.+++ .++.|++.. +|.|+|||++||+++|++
T Consensus 125 v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-------~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 125 FGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLV-------VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEcCCCEEEEEECCCCCEEeecccccccccccccCCcEE-------ECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 77767799999999999999988743211 0122222 255677742 589999999999999998
Q ss_pred eccCcce------------ee----------e----EEE--Eee--cCCeEEEEEec-----CC-------ceeEEEEEE
Q 002016 171 DFAAESV------------EV----------Q----QVI--QLD--ESDQIYVVGYA-----GS-------SQFHAYQIN 208 (981)
Q Consensus 171 ~~~~~~~------------~~----------~----~vv--~s~--~~~~Vyvvg~~-----g~-------~~~~v~aLd 208 (981)
....+.- ++ . .+. .+. ..+.||+..-. +. +.=.++|||
T Consensus 198 ~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 198 YTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred cCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 6642210 00 0 000 011 35577764421 21 112599999
Q ss_pred CCCCceeeeeeeecc--CCcc--CceEEE----cCc---EEEEEECCCCeEEEEEeecCe
Q 002016 209 AMNGELLNHETAAFS--GGFV--GDVALV----SSD---TLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 209 ~~tG~~lw~~~v~~p--~~~~--~~~~~v----g~~---~lv~~d~~~g~L~v~~L~sg~ 257 (981)
++||+..|.++..-. ++.. ...+++ ++. .++.. ..+|.++++|-.+|+
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-DRNGFFYVLDRTNGK 336 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEe-CCCceEEEEECCCCc
Confidence 999999999975221 2221 223333 222 34444 467889999988887
No 12
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.48 E-value=3.7e-12 Score=156.83 Aligned_cols=210 Identities=15% Similarity=0.165 Sum_probs=130.0
Q ss_pred ecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcce-------eeee----------------eeecCeEEEEEcc
Q 002016 48 TQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVV-------DGID----------------IALGKYVITLSSD 104 (981)
Q Consensus 48 ~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i-------~~l~----------------~~~~~~vV~Vs~~ 104 (981)
+|...+++||++|..|.|+|||++||+++||+..+..... .++. +...++.|++++.
T Consensus 189 TPlvvgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 189 TPLKVGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred CCEEECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 3556789999999999999999999999999988654210 0110 1123457777777
Q ss_pred CCEEEEEeCCCCcEeEEEeccCccc-c------CCceeecccccccCCcEEEEEe-----------CCEEEEEECCCCcE
Q 002016 105 GSTLRAWNLPDGQMVWESFLRGSKH-S------KPLLLVPTNLKVDKDSLILVSS-----------KGCLHAVSSIDGEI 166 (981)
Q Consensus 105 g~~V~A~da~tG~llWe~~~~~~~~-s------~~~~~v~~~~~~~~~~~V~V~~-----------~g~l~aLd~~tG~~ 166 (981)
+++|+|+|++||+++|++...+... . .+......+.+...++.|++.. +|.|+|+|++||++
T Consensus 269 Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl 348 (764)
T TIGR03074 269 DARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGAL 348 (764)
T ss_pred CCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcE
Confidence 7899999999999999976543220 0 0000001111222356677742 58899999999999
Q ss_pred eEEEeccCccee----eeE------------EEEeecCCeEEEEEe------cC--------CceeEEEEEECCCCceee
Q 002016 167 LWTRDFAAESVE----VQQ------------VIQLDESDQIYVVGY------AG--------SSQFHAYQINAMNGELLN 216 (981)
Q Consensus 167 ~W~~~~~~~~~~----~~~------------vv~s~~~~~Vyvvg~------~g--------~~~~~v~aLd~~tG~~lw 216 (981)
+|++....+... ... ...-...+.+|+-.- .| .+.-.++|||++||+.+|
T Consensus 349 ~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W 428 (764)
T TIGR03074 349 VWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERW 428 (764)
T ss_pred eeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEE
Confidence 999976422110 000 000012355555211 01 123469999999999999
Q ss_pred eeeeecc--C--CccCceEEE----cCc----EEEEEECCCCeEEEEEeecCee
Q 002016 217 HETAAFS--G--GFVGDVALV----SSD----TLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 217 ~~~v~~p--~--~~~~~~~~v----g~~----~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
.++..-. + ++.....++ .++ .++..+ .+|.++++|-++|+.
T Consensus 429 ~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~-K~G~~~vlDr~tG~~ 481 (764)
T TIGR03074 429 VFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPT-KQGQIYVLDRRTGEP 481 (764)
T ss_pred EecccCCccccccccCCceEEeeecCCCcEeeEEEEEC-CCCEEEEEECCCCCE
Confidence 9975221 1 222223332 122 455554 578999999999884
No 13
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.47 E-value=3.7e-12 Score=146.48 Aligned_cols=219 Identities=20% Similarity=0.241 Sum_probs=148.3
Q ss_pred ccccccEeEEEeccCceeeeeeeec--ccCCCEEEEEcCCCEEEEEECCCCccceEEEcCC-CcceeeeeeeecCeEEEE
Q 002016 25 EDQVGLMDWHQQYIGKVKHAVFHTQ--KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIALGKYVITL 101 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~~f~~~--~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~-~~~i~~l~~~~~~~vV~V 101 (981)
....|...|.... +......+..| ...+++||+++.+|.|.|+|+.+|+++|+..+.. ...+.+. +...++.+++
T Consensus 39 ~~~~g~~~W~~~~-~~~~~~~~~~~~~~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~-~~~~~G~i~~ 116 (370)
T COG1520 39 NNTSGTLLWSVSL-GSGGGGIYAGPAPADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGP-ILGSDGKIYV 116 (370)
T ss_pred cccCcceeeeeec-ccCccceEeccccEeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCc-eEEeCCeEEE
Confidence 3445888897663 22222334444 6679999999999999999999999999998875 1112222 2344667887
Q ss_pred EccCCEEEEEeCCCCcEeEEEeccC-ccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceee
Q 002016 102 SSDGSTLRAWNLPDGQMVWESFLRG-SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEV 179 (981)
Q Consensus 102 s~~g~~V~A~da~tG~llWe~~~~~-~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~ 179 (981)
++..++++++|+.||+++|+..... ..... .++ ..++.|++. .+|.++++|+.||+.+|++..+.+ +..
T Consensus 117 g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~-~~v-------~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~-~~~ 187 (370)
T COG1520 117 GSWDGKLYALDASTGTLVWSRNVGGSPYYAS-PPV-------VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAP-LSL 187 (370)
T ss_pred ecccceEEEEECCCCcEEEEEecCCCeEEec-CcE-------EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCc-ccc
Confidence 8777799999999999999999987 22211 112 346678887 589999999999999999888753 211
Q ss_pred eEE-EEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCcc---------CceEEEcCcEEEEEECCCCeEE
Q 002016 180 QQV-IQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFV---------GDVALVSSDTLVTLDTTRSILV 249 (981)
Q Consensus 180 ~~v-v~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~---------~~~~~vg~~~lv~~d~~~g~L~ 249 (981)
.-. .+....+.+|+.... . ..+++|+|+.+|+..|+.....+.+.+ ...++++++. |.-..++.+.
T Consensus 188 ~~~~~~~~~~~~vy~~~~~-~-~~~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~--~~~~~~g~~~ 263 (370)
T COG1520 188 SIYGSPAIASGTVYVGSDG-Y-DGILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGV--YAGSYGGKLL 263 (370)
T ss_pred ccccCceeecceEEEecCC-C-cceEEEEEccCCcEeeeeeeecccCcccccccccccCceEEECCcE--EEEecCCeEE
Confidence 111 012467888875442 1 236999999999999997554443221 2344445454 2333456677
Q ss_pred EEEeecCee
Q 002016 250 TVSFKNRKI 258 (981)
Q Consensus 250 v~~L~sg~~ 258 (981)
.++..+|+.
T Consensus 264 ~l~~~~G~~ 272 (370)
T COG1520 264 CLDADTGEL 272 (370)
T ss_pred EEEcCCCce
Confidence 777777773
No 14
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=99.31 E-value=4.3e-11 Score=137.69 Aligned_cols=185 Identities=19% Similarity=0.335 Sum_probs=125.7
Q ss_pred cccccccEeEEEeccCceeeeeeeec-ccCCCEEEEEcCCCEEEEEECCCCccceEEEcCC-CcceeeeeeeecCeEEEE
Q 002016 24 YEDQVGLMDWHQQYIGKVKHAVFHTQ-KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI-NDVVDGIDIALGKYVITL 101 (981)
Q Consensus 24 yedqvG~~dW~~~~vG~~~~~~f~~~-~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~-~~~i~~l~~~~~~~vV~V 101 (981)
++.+.|+..|+..+.+. ...+..| ...+++||+++.+|.++|||++||+++|++.... .. ... ++..++++|++
T Consensus 83 ~d~~~g~~~W~~~~~~~--~~~~~~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~-~~~-~~v~~~~~v~~ 158 (370)
T COG1520 83 LNPDTGLVKWSYPLLGA--VAQLSGPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPY-YAS-PPVVGDGTVYV 158 (370)
T ss_pred EeCCCCcEEecccCcCc--ceeccCceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeE-Eec-CcEEcCcEEEE
Confidence 45667888899988771 1222233 2247889999999999999999999999999977 10 111 23567788887
Q ss_pred EccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEe---CCEEEEEECCCCcEeEEEeccCcc--
Q 002016 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAES-- 176 (981)
Q Consensus 102 s~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~---~g~l~aLd~~tG~~~W~~~~~~~~-- 176 (981)
+++.+.++|+|+.||+++|+.....+ .. .... ..+...++.|++.. ++.++|+|+.+|..+|+.+.....
T Consensus 159 ~s~~g~~~al~~~tG~~~W~~~~~~~-~~--~~~~--~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~~~w~~~~~~~~~~ 233 (370)
T COG1520 159 GTDDGHLYALNADTGTLKWTYETPAP-LS--LSIY--GSPAIASGTVYVGSDGYDGILYALNAEDGTLKWSQKVSQTIGR 233 (370)
T ss_pred ecCCCeEEEEEccCCcEEEEEecCCc-cc--cccc--cCceeecceEEEecCCCcceEEEEEccCCcEeeeeeeecccCc
Confidence 76667999999999999999988653 20 0111 11113356677763 458999999999999996432111
Q ss_pred eee--eEEE---EeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeee
Q 002016 177 VEV--QQVI---QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAA 221 (981)
Q Consensus 177 ~~~--~~vv---~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~ 221 (981)
... ...+ ++..++.+|..+..| +++|+|..+|+.+|++...
T Consensus 234 ~~~~~~~~~~~~~v~v~~~~~~~~~~g----~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 234 TAISTTPAVDGGPVYVDGGVYAGSYGG----KLLCLDADTGELIWSFPAG 279 (370)
T ss_pred ccccccccccCceEEECCcEEEEecCC----eEEEEEcCCCceEEEEecc
Confidence 100 0111 122445555544444 5999999999999999654
No 15
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=99.29 E-value=1.2e-10 Score=143.55 Aligned_cols=190 Identities=13% Similarity=0.192 Sum_probs=115.9
Q ss_pred ccccccEeEEEeccCceee----------eeeee------------cccCCCEEEEEcCCCEEEEEECCCCccceEEEcC
Q 002016 25 EDQVGLMDWHQQYIGKVKH----------AVFHT------------QKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLG 82 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~~~----------~~f~~------------~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~ 82 (981)
+.+.|+..|++..-..... +.+.. |...+++||++|.++.|+|||++||+++|++..+
T Consensus 210 Da~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~ 289 (764)
T TIGR03074 210 DAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNN 289 (764)
T ss_pred ECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCC
Confidence 4568999999986332211 11211 3345779999999999999999999999986542
Q ss_pred CCc--------------ceeeeeeeecCeEEEEEcc----------CCEEEEEeCCCCcEeEEEeccCccccC----Cce
Q 002016 83 IND--------------VVDGIDIALGKYVITLSSD----------GSTLRAWNLPDGQMVWESFLRGSKHSK----PLL 134 (981)
Q Consensus 83 ~~~--------------~i~~l~~~~~~~vV~Vs~~----------g~~V~A~da~tG~llWe~~~~~~~~s~----~~~ 134 (981)
... .+.+. +.+.+++|++++. ++.|+|+|++||+++|++....+.... +..
T Consensus 290 G~vdl~~~~g~~~~g~~~~ts~-P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~ 368 (764)
T TIGR03074 290 GTVDLTAGMGTTPPGYYYPTSP-PLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPPAPGET 368 (764)
T ss_pred CceeeecccCcCCCcccccccC-CEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCCCCCCE
Confidence 210 01122 3456677777642 468999999999999999864322100 000
Q ss_pred ee-cccc-----cc-cCCcEEEE-------------------EeCCEEEEEECCCCcEeEEEeccCcce----eee--EE
Q 002016 135 LV-PTNL-----KV-DKDSLILV-------------------SSKGCLHAVSSIDGEILWTRDFAAESV----EVQ--QV 182 (981)
Q Consensus 135 ~v-~~~~-----~~-~~~~~V~V-------------------~~~g~l~aLd~~tG~~~W~~~~~~~~~----~~~--~v 182 (981)
.. +... .. .+.+.||+ ...+.|.|||++||+.+|.++....++ .+. .+
T Consensus 369 ~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L 448 (764)
T TIGR03074 369 YTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSL 448 (764)
T ss_pred eccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCCccccccccCCceE
Confidence 00 0000 00 01223333 125789999999999999997732211 011 12
Q ss_pred EEeec-CC----eEEEEEecCCceeEEEEEECCCCceeeeee
Q 002016 183 IQLDE-SD----QIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (981)
Q Consensus 183 v~s~~-~~----~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~ 219 (981)
++... ++ .||..+- ++.+++||.+||+++|...
T Consensus 449 ~d~~~~~G~~~~~v~~~~K----~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 449 VDLPDADGTTVPALVAPTK----QGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EeeecCCCcEeeEEEEECC----CCEEEEEECCCCCEEeece
Confidence 22222 44 4444333 3479999999999999864
No 16
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=99.26 E-value=1.5e-10 Score=138.67 Aligned_cols=190 Identities=15% Similarity=0.234 Sum_probs=117.0
Q ss_pred ccccccEeEEEeccCcee-ee-----ee-eecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCc---ceeeeeeee
Q 002016 25 EDQVGLMDWHQQYIGKVK-HA-----VF-HTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND---VVDGIDIAL 94 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~~-~~-----~f-~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~---~i~~l~~~~ 94 (981)
+.+.|+..|++..-.... .. .. ..+...+++||+++.+|.|+|||++||+++|++.+.... .+.+. +.+
T Consensus 85 Da~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tss-P~v 163 (527)
T TIGR03075 85 DAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAA-PLV 163 (527)
T ss_pred ECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCC-cEE
Confidence 467899999998622110 00 01 123456789999999999999999999999999875321 12222 345
Q ss_pred cCeEEEEEcc------CCEEEEEeCCCCcEeEEEeccCcccc----------CCc--------eeeccc-----c-ccc-
Q 002016 95 GKYVITLSSD------GSTLRAWNLPDGQMVWESFLRGSKHS----------KPL--------LLVPTN-----L-KVD- 143 (981)
Q Consensus 95 ~~~vV~Vs~~------g~~V~A~da~tG~llWe~~~~~~~~s----------~~~--------~~v~~~-----~-~~~- 143 (981)
.++.|+++.. .+.|+|+|++||+++|++....+.-. ... ...... . ..+
T Consensus 164 ~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~ 243 (527)
T TIGR03075 164 VKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP 243 (527)
T ss_pred ECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC
Confidence 5566776532 36899999999999999887533200 000 000000 0 001
Q ss_pred CCcEEEEEe------CC-----------EEEEEECCCCcEeEEEeccCcce------eeeEEEEeecCCe---EEEEEec
Q 002016 144 KDSLILVSS------KG-----------CLHAVSSIDGEILWTRDFAAESV------EVQQVIQLDESDQ---IYVVGYA 197 (981)
Q Consensus 144 ~~~~V~V~~------~g-----------~l~aLd~~tG~~~W~~~~~~~~~------~~~~vv~s~~~~~---Vyvvg~~ 197 (981)
..+.||+.. ++ .|.|||++||+.+|.++...... ....+++...++. +++.+
T Consensus 244 ~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~-- 321 (527)
T TIGR03075 244 ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHA-- 321 (527)
T ss_pred CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEe--
Confidence 244677743 22 89999999999999997753321 1112222222333 33322
Q ss_pred CCceeEEEEEECCCCceeeee
Q 002016 198 GSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 198 g~~~~~v~aLd~~tG~~lw~~ 218 (981)
.+++.+++||..||+++|..
T Consensus 322 -~K~G~~~vlDr~tG~~i~~~ 341 (527)
T TIGR03075 322 -DRNGFFYVLDRTNGKLLSAE 341 (527)
T ss_pred -CCCceEEEEECCCCceeccc
Confidence 23457999999999998754
No 17
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=3.7e-08 Score=103.64 Aligned_cols=183 Identities=16% Similarity=0.273 Sum_probs=129.0
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~ 132 (981)
...||.++..+.+.|+|+++|++.|++.++.. +.+.+...++- |++|-..+.++-++-+||.+.|.+..-+++- -
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~R--iE~sa~vvgdf-VV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--~ 97 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVR--IECSAIVVGDF-VVLGCYSGGLYFLCVKTGSQIWNFVILETVK--V 97 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCce--eeeeeEEECCE-EEEEEccCcEEEEEecchhheeeeeehhhhc--c
Confidence 44699999999999999999999999999765 54443345554 6667777799999999999999999876553 1
Q ss_pred ceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCC
Q 002016 133 LLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (981)
Q Consensus 133 ~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~t 211 (981)
.+.+. -..+.++.. .|+.++|||..+-.-+|+.+-+.+.. ...++ ...++.+|+....| .|.|.+.++
T Consensus 98 ~a~~d-----~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f-~sP~i-~~g~~sly~a~t~G----~vlavt~~~ 166 (354)
T KOG4649|consen 98 RAQCD-----FDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTF-VSPVI-APGDGSLYAAITAG----AVLAVTKNP 166 (354)
T ss_pred ceEEc-----CCCceEEEecCCCcEEEecccccceEEecccCCcee-cccee-cCCCceEEEEeccc----eEEEEccCC
Confidence 22220 124567776 59999999999999999976665443 12222 24578899887777 599999999
Q ss_pred C--ceeeeeeeeccCCccCceEEEcCc-EEEEEECCCCeEEEEEeecCe
Q 002016 212 G--ELLNHETAAFSGGFVGDVALVSSD-TLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 212 G--~~lw~~~v~~p~~~~~~~~~vg~~-~lv~~d~~~g~L~v~~L~sg~ 257 (981)
+ ..+|..+...|- -+++..++.- ++.|+| |.|...+ .+|+
T Consensus 167 ~~~~~~w~~~~~~Pi--F~splcv~~sv~i~~Vd---G~l~~f~-~sG~ 209 (354)
T KOG4649|consen 167 YSSTEFWAATRFGPI--FASPLCVGSSVIITTVD---GVLTSFD-ESGR 209 (354)
T ss_pred CCcceehhhhcCCcc--ccCceeccceEEEEEec---cEEEEEc-CCCc
Confidence 9 889998766652 2222333332 333443 4565555 5555
No 18
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.73 E-value=2.6e-06 Score=90.02 Aligned_cols=178 Identities=13% Similarity=0.154 Sum_probs=130.5
Q ss_pred ccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEcc
Q 002016 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD 104 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~ 104 (981)
+.|.|+..|++-+-++....... -++.|+++-.+|.|+-|+-+||+..|..+..+....... ..-..++++.++.
T Consensus 39 d~~sG~~~We~ilg~RiE~sa~v----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~-~d~~~glIycgsh 113 (354)
T KOG4649|consen 39 DPQSGNLIWEAILGVRIECSAIV----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ-CDFDGGLIYCGSH 113 (354)
T ss_pred cCCCCcEEeehhhCceeeeeeEE----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE-EcCCCceEEEecC
Confidence 57899999999887776533222 377899999999999999999999999987655211111 2246678888998
Q ss_pred CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCC--cEeEEEeccCcceeeeE
Q 002016 105 GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDG--EILWTRDFAAESVEVQQ 181 (981)
Q Consensus 105 g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG--~~~W~~~~~~~~~~~~~ 181 (981)
+++.+|+|..+=.-+|+.+-.+...+.+. +. ..++.+++. ..|.|.|.+.+++ ...|.+....|-..-.+
T Consensus 114 d~~~yalD~~~~~cVykskcgG~~f~sP~-i~------~g~~sly~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~spl 186 (354)
T KOG4649|consen 114 DGNFYALDPKTYGCVYKSKCGGGTFVSPV-IA------PGDGSLYAAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPL 186 (354)
T ss_pred CCcEEEecccccceEEecccCCceeccce-ec------CCCceEEEEeccceEEEEccCCCCcceehhhhcCCccccCce
Confidence 89999999999999999888776652222 22 235567776 7999999999999 89999988776552222
Q ss_pred EEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeecc
Q 002016 182 VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS 223 (981)
Q Consensus 182 vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p 223 (981)
++ ...+.....+| .+.++| ..|+.+|+.....|
T Consensus 187 cv----~~sv~i~~VdG----~l~~f~-~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 187 CV----GSSVIITTVDG----VLTSFD-ESGRQVWRPATKGP 219 (354)
T ss_pred ec----cceEEEEEecc----EEEEEc-CCCcEEEeecCCCc
Confidence 32 22344434455 599999 79999998864443
No 19
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.67 E-value=7.8e-07 Score=103.26 Aligned_cols=206 Identities=17% Similarity=0.213 Sum_probs=124.8
Q ss_pred cCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCccee-------eee--eeecC------eEEEEEccCCEEEEEeCCC
Q 002016 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVD-------GID--IALGK------YVITLSSDGSTLRAWNLPD 115 (981)
Q Consensus 51 ~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~-------~l~--~~~~~------~vV~Vs~~g~~V~A~da~t 115 (981)
..++.+|+.|.-|.+.|||++||+++|+.+-+.+..+. ++. .+..+ ..|++...+.+|.|+|++|
T Consensus 212 kvgdtlYvcTphn~v~ALDa~TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~t 291 (773)
T COG4993 212 KVGDTLYVCTPHNRVFALDAATGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADT 291 (773)
T ss_pred EECCEEEEecCcceeEEeeccCCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCC
Confidence 34788999999999999999999999998765543221 111 11122 2367766678999999999
Q ss_pred CcEeEEEeccCccc-------cCCceeecccccccCCcEEEE-E----------eCCEEEEEECCCCcEeEEEeccCcce
Q 002016 116 GQMVWESFLRGSKH-------SKPLLLVPTNLKVDKDSLILV-S----------SKGCLHAVSSIDGEILWTRDFAAESV 177 (981)
Q Consensus 116 G~llWe~~~~~~~~-------s~~~~~v~~~~~~~~~~~V~V-~----------~~g~l~aLd~~tG~~~W~~~~~~~~~ 177 (981)
|+..|.+.-.+... .++-.+.+.+.+.-.+..+++ . ..|.+.++|..+|+..|.++...++.
T Consensus 292 Gkvc~~Fa~~Ga~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~ 371 (773)
T COG4993 292 GKVCWSFANKGALNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDP 371 (773)
T ss_pred CcEeheeccCceeeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCCC
Confidence 99999976543211 112222222222222222333 2 15778899999999999998765432
Q ss_pred e----eeEEE----------Ee--ecCCeEEEEEec------C--------CceeEEEEEECCCCceeeeeeeecc--CC
Q 002016 178 E----VQQVI----------QL--DESDQIYVVGYA------G--------SSQFHAYQINAMNGELLNHETAAFS--GG 225 (981)
Q Consensus 178 ~----~~~vv----------~s--~~~~~Vyvvg~~------g--------~~~~~v~aLd~~tG~~lw~~~v~~p--~~ 225 (981)
. +.+-- .+ ..-+.||+---. | .+.-.++|+|+.||+..|-++..-. ++
T Consensus 372 t~p~~~g~tyt~nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWD 451 (773)
T COG4993 372 TAPTAPGQTYTRNSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWD 451 (773)
T ss_pred CCCCCCCceeecCCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhc
Confidence 1 11100 01 134566653211 1 1234589999999999998864221 22
Q ss_pred ccC--ceEEE----cCc---EEEEEECCCCeEEEEEeecCe
Q 002016 226 FVG--DVALV----SSD---TLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 226 ~~~--~~~~v----g~~---~lv~~d~~~g~L~v~~L~sg~ 257 (981)
.+. ...+. .+. .++.-+ .+|.++++|-.+|+
T Consensus 452 mDvp~qp~L~D~~~DG~~vpalv~pt-k~G~~YVlDRrtGe 491 (773)
T COG4993 452 MDVPAQPTLLDITKDGKVVPALVHPT-KNGFIYVLDRRTGE 491 (773)
T ss_pred ccCCCCceEEEeecCCcEeeeeeccc-ccCcEEEEEcCCCc
Confidence 222 22222 111 445555 46889999988887
No 20
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.97 E-value=0.00014 Score=85.06 Aligned_cols=199 Identities=15% Similarity=0.250 Sum_probs=110.4
Q ss_pred ccccccccccccEeEEEecc-Cce---ee------eeeeec----ccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCC
Q 002016 19 PSLSLYEDQVGLMDWHQQYI-GKV---KH------AVFHTQ----KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN 84 (981)
Q Consensus 19 ~~~AlyedqvG~~dW~~~~v-G~~---~~------~~f~~~----~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~ 84 (981)
.+.||-.+ .|+..|++.-- +.. ++ ..+.-. +....|||..|.+..|.|||++||++.|.+.-...
T Consensus 225 ~v~ALDa~-TGkekWkydp~~~~nv~~~~~tCrgVsy~~a~a~~k~pc~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga 303 (773)
T COG4993 225 RVFALDAA-TGKEKWKYDPNLKSNVDPQHQTCRGVSYGAAKADAKSPCPRRIFLPTADARLIALDADTGKVCWSFANKGA 303 (773)
T ss_pred eeEEeecc-CCceeeecCCCCCCCcccccccccceecccccccccCCCceeEEeecCCceEEEEeCCCCcEeheeccCce
Confidence 34455555 59999998641 111 10 011111 12345699999999999999999999999643211
Q ss_pred c--------c----eeeee-eeecCeEEEEEcc----------CCEEEEEeCCCCcEeEEEeccCccccCCce---eecc
Q 002016 85 D--------V----VDGID-IALGKYVITLSSD----------GSTLRAWNLPDGQMVWESFLRGSKHSKPLL---LVPT 138 (981)
Q Consensus 85 ~--------~----i~~l~-~~~~~~vV~Vs~~----------g~~V~A~da~tG~llWe~~~~~~~~s~~~~---~v~~ 138 (981)
. . ..+.+ +..+...+++++. .+-+|++|..+|++.|.+....+....++. .-..
T Consensus 304 ~~l~tgm~~~k~g~y~~tS~p~~~~~~~v~~g~v~Dn~st~e~sgVir~fdv~tG~l~w~~D~gnpD~t~p~~~g~tyt~ 383 (773)
T COG4993 304 LNLETGMKDTKDGLYYGTSPPEFGVKGIVIAGSVADNESTWEPSGVIRGFDVLTGKLTWAGDPGNPDPTAPTAPGQTYTR 383 (773)
T ss_pred eeeeccCCCCCCCeEeecCCCcccceeEEEeeccCCCceeeccCccccccccccCceEEccCCCCCCCCCCCCCCceeec
Confidence 0 0 00111 1222233333221 246899999999999998865443200000 0000
Q ss_pred ccc--------ccCCcEEEEE-e------------------CCEEEEEECCCCcEeEEEeccCcce----eeeEE--EEe
Q 002016 139 NLK--------VDKDSLILVS-S------------------KGCLHAVSSIDGEILWTRDFAAESV----EVQQV--IQL 185 (981)
Q Consensus 139 ~~~--------~~~~~~V~V~-~------------------~g~l~aLd~~tG~~~W~~~~~~~~~----~~~~v--v~s 185 (981)
+++ -.+-+.|++- . ...+.|+|+.||+.+|.+.....++ .+.|. .+.
T Consensus 384 nspn~W~~~SyD~~lnlVy~p~Gn~~pd~wg~trtp~dekysssivAlD~~TG~~kW~yQtvhhDlWDmDvp~qp~L~D~ 463 (773)
T COG4993 384 NSPNSWASASYDAKLNLVYVPMGNQTPDTWGGTRTPGDEKYSSSIVALDATTGKLKWVYQTVHHDLWDMDVPAQPTLLDI 463 (773)
T ss_pred CCCCcccccccCCCCCeEEEeCCCCChhhccCCCCcccccccceeEEecCCCcceeeeeeccCcchhcccCCCCceEEEe
Confidence 000 0123456652 2 2479999999999999987653322 12222 233
Q ss_pred ecCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 186 DESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 186 ~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
..++.+.=+-.....++.++.||..||+++-..
T Consensus 464 ~~DG~~vpalv~ptk~G~~YVlDRrtGe~lv~~ 496 (773)
T COG4993 464 TKDGKVVPALVHPTKNGFIYVLDRRTGELLVPI 496 (773)
T ss_pred ecCCcEeeeeecccccCcEEEEEcCCCcccccc
Confidence 334544322223334456999999999987433
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.70 E-value=0.12 Score=56.18 Aligned_cols=184 Identities=13% Similarity=0.143 Sum_probs=103.1
Q ss_pred EEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEE-EccCCEEEEEeCCCCcEeEEEeccCccccCCc
Q 002016 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (981)
Q Consensus 55 ~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~V-s~~g~~V~A~da~tG~llWe~~~~~~~~s~~~ 133 (981)
.++.++.+|.|..+|..+|+.+........ ..++....++..+++ ++.++.++.||..+|+.+.+........ ..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~ 78 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR--PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE--LF 78 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECCCC--CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc--EE
Confidence 345667889999999999998777654322 223322223344443 4556799999999999876654332211 11
Q ss_pred eeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCC
Q 002016 134 LLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (981)
Q Consensus 134 ~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~t 211 (981)
.+. ..++.+++. .++.+..+|..+++.+...+.... +..+... .++..++++..++. .+..+|..+
T Consensus 79 ~~~------~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~-~dg~~l~~~~~~~~--~~~~~d~~~ 146 (300)
T TIGR03866 79 ALH------PNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVS-PDGKIVVNTSETTN--MAHFIDTKT 146 (300)
T ss_pred EEC------CCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEEC-CCCCEEEEEecCCC--eEEEEeCCC
Confidence 111 123456664 378999999999988777653321 1222212 23444444433221 355678888
Q ss_pred CceeeeeeeeccCCccCceEEE-cCcEEEEEECCCCeEEEEEeecCe
Q 002016 212 GELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 212 G~~lw~~~v~~p~~~~~~~~~v-g~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
|+........ ... ..+.+. .+..++......+.+.+.++++++
T Consensus 147 ~~~~~~~~~~--~~~-~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~ 190 (300)
T TIGR03866 147 YEIVDNVLVD--QRP-RFAEFTADGKELWVSSEIGGTVSVIDVATRK 190 (300)
T ss_pred CeEEEEEEcC--CCc-cEEEECCCCCEEEEEcCCCCEEEEEEcCcce
Confidence 8776543211 111 111222 223333333345788899998876
No 22
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=97.43 E-value=0.00023 Score=54.46 Aligned_cols=31 Identities=29% Similarity=0.595 Sum_probs=28.6
Q ss_pred CEEEEEcCCCEEEEEECCCCccceEEEcCCC
Q 002016 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGIN 84 (981)
Q Consensus 54 ~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~ 84 (981)
++||+++.+|.|+|||++||+++|+++.+..
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~ 31 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPP 31 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSG
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCC
Confidence 4799999999999999999999999998765
No 23
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.39 E-value=0.3 Score=56.62 Aligned_cols=320 Identities=13% Similarity=0.140 Sum_probs=147.9
Q ss_pred ccccccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEE
Q 002016 21 LSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVIT 100 (981)
Q Consensus 21 ~AlyedqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~ 100 (981)
.++.+.+..+..-+....|.+ +... ..+.++..+|+++.+|.|.-+|+.+++++-+...... ..+.....++..++
T Consensus 18 v~viD~~t~~~~~~i~~~~~~-h~~~-~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~--~~~i~~s~DG~~~~ 93 (369)
T PF02239_consen 18 VAVIDGATNKVVARIPTGGAP-HAGL-KFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN--PRGIAVSPDGKYVY 93 (369)
T ss_dssp EEEEETTT-SEEEEEE-STTE-EEEE-E-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE--EEEEEE--TTTEEE
T ss_pred EEEEECCCCeEEEEEcCCCCc-eeEE-EecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC--cceEEEcCCCCEEE
Confidence 466676677777776664544 2211 1123466799999999999999999999999887654 22342344556667
Q ss_pred EEc-cCCEEEEEeCCCCcEeEEEeccCccc----cCCceeecccccccCCcEEEEEe-CCEEEEEECCCCcEeEEEeccC
Q 002016 101 LSS-DGSTLRAWNLPDGQMVWESFLRGSKH----SKPLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAA 174 (981)
Q Consensus 101 Vs~-~g~~V~A~da~tG~llWe~~~~~~~~----s~~~~~v~~~~~~~~~~~V~V~~-~g~l~aLd~~tG~~~W~~~~~~ 174 (981)
++. ..+.+..+|++|.+++=+.+..+... +....++.+ ..+...|+.+. .+++.-+|-.+.+.+.......
T Consensus 94 v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s---~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 94 VANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS---PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE----SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-
T ss_pred EEecCCCceeEeccccccceeecccccccccccCCCceeEEec---CCCCEEEEEEccCCeEEEEEeccccccceeeecc
Confidence 665 46799999999999998876643211 000111110 01121233332 4666666666665554433322
Q ss_pred cceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeec-cCCccC-ceEEEcCcEEEEEECCCCeEEEEE
Q 002016 175 ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVG-DVALVSSDTLVTLDTTRSILVTVS 252 (981)
Q Consensus 175 ~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~-p~~~~~-~~~~vg~~~lv~~d~~~g~L~v~~ 252 (981)
+.. +.... ...++..|+++..++. ++..+|.++++.++....+. |....+ ..+..+.+.+ |.....+...+-.
T Consensus 171 g~~-~~D~~-~dpdgry~~va~~~sn--~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~v-w~~~~~~~~~~~~ 245 (369)
T PF02239_consen 171 GRF-PHDGG-FDPDGRYFLVAANGSN--KIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPV-WATSGLGYFAIPL 245 (369)
T ss_dssp -TT-EEEEE-E-TTSSEEEEEEGGGT--EEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEE-EEEEBSSSSEEEE
T ss_pred ccc-ccccc-cCcccceeeecccccc--eeEEEeeccceEEEEeeccccccccccccccCCCcceE-Eeeccccceeccc
Confidence 221 11111 1234455555555433 68999999999987653321 111111 1222233332 3322233333333
Q ss_pred eecCeeeEEEEeecccCCCCCCceEEeecCCccceEEEecC--cEEEEEEe---cCCcEEEEEeecCcceeeeeeeecCC
Q 002016 253 FKNRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINN--YKLFIRLT---SEDKLEVVHKVDHETVVSDALVFSEG 327 (981)
Q Consensus 253 L~sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~ 327 (981)
+++..+ .-... ..-..++-++.+..| +.+...| +++.+... +++.+.+++..... .+ ..+....+
T Consensus 246 ig~~~v--~v~d~-----~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~-~~-~~i~~~~~ 315 (369)
T PF02239_consen 246 IGTDPV--SVHDD-----YAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK-VV-KTITPGPG 315 (369)
T ss_dssp EE--TT--T-STT-----TBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE-EE-E-HHHHHT
T ss_pred ccCCcc--ccchh-----hcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc-ee-EEEeccCC
Confidence 333221 00000 011123333433444 4444344 55565522 33467777754431 11 11111112
Q ss_pred ceeEE-EEEEcCceEEEE---Ee-eeeeeccCccceeeee
Q 002016 328 KEAFA-VVEHGGSKVDIT---VK-PGQDWNNNLVQESIEM 362 (981)
Q Consensus 328 ~~~~~-~~~~~~~~v~~~---~~-~~~~~~~~~~~~~~~~ 362 (981)
+.+.. -.+..+..+++. .. ++.++|..+.++.-.+
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 11222 124555566666 22 6888998877764333
No 24
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.31 E-value=0.54 Score=54.04 Aligned_cols=190 Identities=11% Similarity=0.052 Sum_probs=115.4
Q ss_pred CCCEEEEEcCC-----CEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEE-Ec---------cCCEEEEEeCCCC
Q 002016 52 GRKRVVVSTEE-----NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SS---------DGSTLRAWNLPDG 116 (981)
Q Consensus 52 ~~~~VyvaT~~-----g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~V-s~---------~g~~V~A~da~tG 116 (981)
+..++||.+.. |.|+.+|.++++++=........ .+. .+-++..+++ .+ ....|..||++|+
T Consensus 11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P--~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLP--NPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCC--cee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 46789999887 89999999999887555554331 122 3344455555 45 4579999999999
Q ss_pred cEeEEEeccCccc---cCCceeecccccccCCcEEEEE--e-CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCe
Q 002016 117 QMVWESFLRGSKH---SKPLLLVPTNLKVDKDSLILVS--S-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (981)
Q Consensus 117 ~llWe~~~~~~~~---s~~~~~v~~~~~~~~~~~V~V~--~-~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~ 190 (981)
+++.+..+..... ....... .....++.++|. . +..|..+|.++|+++=+...+.... +. ...++.
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~---~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~----vy-~t~e~~ 159 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMT---SLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH----IF-PTANDT 159 (352)
T ss_pred cEEeEEccCCCchhhccCccceE---EECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE----EE-EecCCc
Confidence 9999999753311 0000011 011235578875 4 8999999999999999988765432 22 234555
Q ss_pred EEEEEecCCceeEEEEEECCCCceeeeeeeec--c--CCc-cCceEEEcCcEEEEEECCCCeEEEEEeecCe
Q 002016 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAF--S--GGF-VGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 191 Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~--p--~~~-~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
-++.+.+|. ...+.+| .+|+.. ..+... . -.+ ....+...++..+|++.. |.++++|+....
T Consensus 160 ~~~~~~Dg~--~~~v~~d-~~g~~~-~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~ 226 (352)
T TIGR02658 160 FFMHCRDGS--LAKVGYG-TKGNPK-IKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGD 226 (352)
T ss_pred cEEEeecCc--eEEEEec-CCCceE-EeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCc
Confidence 556676664 2344555 456633 221111 1 001 112122235566777655 999999986644
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.28 E-value=0.15 Score=53.49 Aligned_cols=188 Identities=13% Similarity=0.151 Sum_probs=111.0
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~ 132 (981)
++.+++++.+|.|...|..+++...+...... .+..+.....+.+++.++.++.++.||..+++............ ..
T Consensus 63 ~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i-~~ 140 (289)
T cd00200 63 GTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV-NS 140 (289)
T ss_pred CCEEEEEcCCCeEEEEEcCcccceEEEeccCC-cEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE-EE
Confidence 45799999999999999999988777654332 23333212233566656646799999999999988877433222 11
Q ss_pred ceeecccccccCCcEEEEEe-CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCC
Q 002016 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (981)
Q Consensus 133 ~~~v~~~~~~~~~~~V~V~~-~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~t 211 (981)
..+. ..+..+++.. +|.+..+|..+|+............ ..+.....+..+++.+..| .+..+|..+
T Consensus 141 ~~~~------~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~~~----~i~i~d~~~ 208 (289)
T cd00200 141 VAFS------PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEV--NSVAFSPDGEKLLSSSSDG----TIKLWDLST 208 (289)
T ss_pred EEEc------CcCCEEEEEcCCCcEEEEEccccccceeEecCcccc--ceEEECCCcCEEEEecCCC----cEEEEECCC
Confidence 1111 1133444455 9999999999998887776443222 1222122333555544433 488889988
Q ss_pred CceeeeeeeeccCCccCceEEEc-CcEEEEEECCCCeEEEEEeecCe
Q 002016 212 GELLNHETAAFSGGFVGDVALVS-SDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 212 G~~lw~~~v~~p~~~~~~~~~vg-~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
|+.+.+.... +..+.. +.+-. +..+++.+ .++.+++.++.++.
T Consensus 209 ~~~~~~~~~~-~~~i~~-~~~~~~~~~~~~~~-~~~~i~i~~~~~~~ 252 (289)
T cd00200 209 GKCLGTLRGH-ENGVNS-VAFSPDGYLLASGS-EDGTIRVWDLRTGE 252 (289)
T ss_pred Cceecchhhc-CCceEE-EEEcCCCcEEEEEc-CCCcEEEEEcCCce
Confidence 8877655211 111111 11112 23444443 46788888887665
No 26
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.28 E-value=0.4 Score=52.05 Aligned_cols=190 Identities=12% Similarity=0.142 Sum_probs=102.1
Q ss_pred CCCEEEEE-cCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEE-ccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 52 GRKRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 52 ~~~~Vyva-T~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs-~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
+++.+|++ +.++.|..+|.++|+...+...... ...+....+++.++++ ..++.++.||..+++.+.+........
T Consensus 41 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 118 (300)
T TIGR03866 41 DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD--PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPE 118 (300)
T ss_pred CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC--ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcc
Confidence 34567654 5779999999999987654433221 1222112234455554 446799999999999887765432211
Q ss_pred cCCceeecccccccCCcEEEEEe-C-CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEE
Q 002016 130 SKPLLLVPTNLKVDKDSLILVSS-K-GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (981)
Q Consensus 130 s~~~~~v~~~~~~~~~~~V~V~~-~-g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aL 207 (981)
...+. ..+..+++.. + ..+..+|..+|+.......... +..+..+..+..+++.+..++ .+..+
T Consensus 119 --~~~~~------~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~---~v~i~ 184 (300)
T TIGR03866 119 --GMAVS------PDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSEIGG---TVSVI 184 (300)
T ss_pred --eEEEC------CCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcCCCC---EEEEE
Confidence 11121 1133344433 3 3567779888877655433221 112222334455655433232 58889
Q ss_pred ECCCCceeeeeeeeccC----CccC-ceEEE-cCcEEEEEECCCCeEEEEEeecCe
Q 002016 208 NAMNGELLNHETAAFSG----GFVG-DVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 208 d~~tG~~lw~~~v~~p~----~~~~-~~~~v-g~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
|..+|+.+-......+. .... .+.+- .+..+++.....+.+++.++++++
T Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~ 240 (300)
T TIGR03866 185 DVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE 240 (300)
T ss_pred EcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc
Confidence 99999876544322211 1111 12221 233433333345678888888776
No 27
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.19 E-value=0.36 Score=55.99 Aligned_cols=157 Identities=13% Similarity=0.144 Sum_probs=92.8
Q ss_pred CEEEEE-cCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC
Q 002016 54 KRVVVS-TEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (981)
Q Consensus 54 ~~Vyva-T~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~ 132 (981)
+..||. .++|.|+.+|.+|.+++-+......- ..++....++..++|++.++.|.-+|+.+++++-+.+...... +
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~-h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~--~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAP-HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR--G 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTE-EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE--E
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCc-eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc--e
Confidence 344444 46799999999999999998775431 1112112334456666556799999999999999998865432 2
Q ss_pred ceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCc-----ceeeeEEEEeecCCeEEEEEecCCceeEEE
Q 002016 133 LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE-----SVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (981)
Q Consensus 133 ~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~-----~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~ 205 (981)
..+. ..++++++. ..+.+..+|+++.+++=+.+.... ......++. .....-|++..-.. .++.
T Consensus 83 i~~s------~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~-s~~~~~fVv~lkd~--~~I~ 153 (369)
T PF02239_consen 83 IAVS------PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVA-SPGRPEFVVNLKDT--GEIW 153 (369)
T ss_dssp EEE--------TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE--SSSSEEEEEETTT--TEEE
T ss_pred EEEc------CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEe-cCCCCEEEEEEccC--CeEE
Confidence 2111 235677775 489999999999998877654321 111223332 23444466666532 2577
Q ss_pred EEECCCCceeeeeeeec
Q 002016 206 QINAMNGELLNHETAAF 222 (981)
Q Consensus 206 aLd~~tG~~lw~~~v~~ 222 (981)
.+|..+.+.+....+..
T Consensus 154 vVdy~d~~~~~~~~i~~ 170 (369)
T PF02239_consen 154 VVDYSDPKNLKVTTIKV 170 (369)
T ss_dssp EEETTTSSCEEEEEEE-
T ss_pred EEEeccccccceeeecc
Confidence 88888877766555544
No 28
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.11 E-value=0.11 Score=59.45 Aligned_cols=206 Identities=12% Similarity=0.094 Sum_probs=124.5
Q ss_pred cccCCCEEEEEcC----------CCEEEEEECCCCccceEEEcCCCcc-----e-eeeeeeecCeEEEEEc-c-CCEEEE
Q 002016 49 QKTGRKRVVVSTE----------ENVIASLDLRHGEIFWRHVLGINDV-----V-DGIDIALGKYVITLSS-D-GSTLRA 110 (981)
Q Consensus 49 ~~~~~~~VyvaT~----------~g~L~ALd~~tG~ivWR~~l~~~~~-----i-~~l~~~~~~~vV~Vs~-~-g~~V~A 110 (981)
.+.+++.+|+++. .+.|..+|++|++++.+..++..-. . ..+....++..++|+. + .+.|..
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V 132 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV 132 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence 3456778999865 7899999999999999999864411 0 0222244566777765 3 578999
Q ss_pred EeCCCCcEeEEEeccCccc------------c------------------CCceee-c------ccc--cccCCcEEEEE
Q 002016 111 WNLPDGQMVWESFLRGSKH------------S------------------KPLLLV-P------TNL--KVDKDSLILVS 151 (981)
Q Consensus 111 ~da~tG~llWe~~~~~~~~------------s------------------~~~~~v-~------~~~--~~~~~~~V~V~ 151 (981)
+|.++|+.+=+..+.+... + ...++. + ... ....+..+++.
T Consensus 133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs 212 (352)
T TIGR02658 133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT 212 (352)
T ss_pred EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence 9999999998888754321 0 000010 1 001 11134567776
Q ss_pred eCCEEEEEECCCCc----EeEEE-eccCc--ceeeeE---EEEeecCCeEEEEEecCC------ceeEEEEEECCCCcee
Q 002016 152 SKGCLHAVSSIDGE----ILWTR-DFAAE--SVEVQQ---VIQLDESDQIYVVGYAGS------SQFHAYQINAMNGELL 215 (981)
Q Consensus 152 ~~g~l~aLd~~tG~----~~W~~-~~~~~--~~~~~~---vv~s~~~~~Vyvvg~~g~------~~~~v~aLd~~tG~~l 215 (981)
..|.|+.+|..+.+ ..|.. ..... ...|.. +.....++.+||....+. ..-+|..+|++|++++
T Consensus 213 ~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi 292 (352)
T TIGR02658 213 YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRL 292 (352)
T ss_pred cCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEE
Confidence 67999999944333 23443 21111 111211 222346789998654321 0126999999999999
Q ss_pred eeeeeeccCCccCceEEE-cCc-EEEEEECCCCeEEEEEeecCe
Q 002016 216 NHETAAFSGGFVGDVALV-SSD-TLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 216 w~~~v~~p~~~~~~~~~v-g~~-~lv~~d~~~g~L~v~~L~sg~ 257 (981)
-...++.. .. .+.+- .+. .+++++...+.+.++|..+++
T Consensus 293 ~~i~vG~~--~~-~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 293 RKIELGHE--ID-SINVSQDAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred EEEeCCCc--ee-eEEECCCCCeEEEEeCCCCCcEEEEECcCCe
Confidence 87754432 11 12222 233 666676667889999999987
No 29
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.06 E-value=0.11 Score=56.71 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=99.4
Q ss_pred CCCEEEEEcCC---CEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcc
Q 002016 52 GRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 52 ~~~~VyvaT~~---g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~ 128 (981)
.++.+|-+|.. ..|..+|++||++..++.|+...-..|+ ...++.++-++=..+....+|++|-+.+=+++..++.
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGi-t~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EG 132 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGI-TILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEG 132 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEE-EEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeE-EEECCEEEEEEecCCeEEEEccccceEEEEEecCCcc
Confidence 47899999964 4899999999999999999876312255 3467777777877789999999999999888877654
Q ss_pred ccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEE-EeecCCeEEEEEecCCceeEEEE
Q 002016 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVI-QLDESDQIYVVGYAGSSQFHAYQ 206 (981)
Q Consensus 129 ~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv-~s~~~~~Vyvvg~~g~~~~~v~a 206 (981)
. .+. ..++.+++. +..+|+-+|+++-+..=+...........++- .-..++.+|+=-+... .++.
T Consensus 133 W----GLt------~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~td---~I~~ 199 (264)
T PF05096_consen 133 W----GLT------SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQTD---RIVR 199 (264)
T ss_dssp -----EEE------ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTSS---EEEE
T ss_pred e----EEE------cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCCC---eEEE
Confidence 4 222 113334443 35699999999987765554432222111110 0124788886444333 5899
Q ss_pred EECCCCceeeeeee
Q 002016 207 INAMNGELLNHETA 220 (981)
Q Consensus 207 Ld~~tG~~lw~~~v 220 (981)
+|+.||++.-...+
T Consensus 200 Idp~tG~V~~~iDl 213 (264)
T PF05096_consen 200 IDPETGKVVGWIDL 213 (264)
T ss_dssp EETTT-BEEEEEE-
T ss_pred EeCCCCeEEEEEEh
Confidence 99999999866644
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=96.97 E-value=0.2 Score=52.55 Aligned_cols=188 Identities=15% Similarity=0.143 Sum_probs=109.5
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~ 132 (981)
++.+++++.+|.+...|..+++...+...... .+..+.....+..+++++.++.++.||..+++...+........ ..
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i-~~ 98 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV-SS 98 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcE-EE
Confidence 56788999999999999999987777654332 22222112233355556657799999999998888877544222 11
Q ss_pred ceeecccccccCCcEEEEEe-CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCC
Q 002016 133 LLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (981)
Q Consensus 133 ~~~v~~~~~~~~~~~V~V~~-~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~t 211 (981)
..+. ..+..+++.. +|.+..+|..+++............ ..+... ..+.+++.+..++ .+..+|..+
T Consensus 99 ~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i--~~~~~~-~~~~~l~~~~~~~---~i~i~d~~~ 166 (289)
T cd00200 99 VAFS------PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWV--NSVAFS-PDGTFVASSSQDG---TIKLWDLRT 166 (289)
T ss_pred EEEc------CCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcE--EEEEEc-CcCCEEEEEcCCC---cEEEEEccc
Confidence 1111 1133444444 8999999999999888776332222 222211 2244444444222 488889988
Q ss_pred CceeeeeeeeccCCccCceEEEcC-cEEEEEECCCCeEEEEEeecCe
Q 002016 212 GELLNHETAAFSGGFVGDVALVSS-DTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 212 G~~lw~~~v~~p~~~~~~~~~vg~-~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
++.+....... ..+. .+.+..+ ..++... .++.+.+.++.+++
T Consensus 167 ~~~~~~~~~~~-~~i~-~~~~~~~~~~l~~~~-~~~~i~i~d~~~~~ 210 (289)
T cd00200 167 GKCVATLTGHT-GEVN-SVAFSPDGEKLLSSS-SDGTIKLWDLSTGK 210 (289)
T ss_pred cccceeEecCc-cccc-eEEECCCcCEEEEec-CCCcEEEEECCCCc
Confidence 88876654111 1111 1222222 2444443 26778888887655
No 31
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=96.73 E-value=0.0025 Score=49.15 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=26.4
Q ss_pred CccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCC
Q 002016 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPD 115 (981)
Q Consensus 73 G~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~t 115 (981)
|+++|++.++.+ +.+. ++..++.|++++.+++++|+|++|
T Consensus 1 G~~~W~~~~~~~--~~~~-~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGP--IWSS-PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS-----S---EECTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCC--cCcC-CEEECCEEEEEcCCCEEEEEeCCC
Confidence 899999999764 3333 456778888888788999999975
No 32
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=96.69 E-value=0.0035 Score=48.38 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=27.5
Q ss_pred ccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCC
Q 002016 29 GLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRH 72 (981)
Q Consensus 29 G~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~t 72 (981)
|+..|++++-|.. +..|...+++||+++.+|.|+|||++|
T Consensus 1 G~~~W~~~~~~~~----~~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 1 GKVLWSYDTGGPI----WSSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S-EEEEEE-SS-------S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred CceeEEEECCCCc----CcCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 7889999885422 345677799999999999999999976
No 33
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=96.68 E-value=0.0037 Score=47.78 Aligned_cols=32 Identities=13% Similarity=0.229 Sum_probs=27.1
Q ss_pred EEEEEccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 98 vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
.|+++..++.++|+|+.||+++|+++......
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~ 33 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGPPVD 33 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSSGGG
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCCCCc
Confidence 56677777899999999999999999876543
No 34
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=96.66 E-value=0.0021 Score=47.07 Aligned_cols=28 Identities=29% Similarity=0.584 Sum_probs=25.7
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEE
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRH 79 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~ 79 (981)
.++.+|+++.+|.|+|+|+++|+++|++
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 3568999999999999999999999985
No 35
>PTZ00421 coronin; Provisional
Probab=96.65 E-value=0.37 Score=58.02 Aligned_cols=196 Identities=13% Similarity=0.103 Sum_probs=106.1
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceE-----EEcCCC-cceeeeeee-ecCeEEEEEccCCEEEEEeCCCCcEeEEEecc
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWR-----HVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR-----~~l~~~-~~i~~l~~~-~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~ 125 (981)
++.+++++++|.|...|..++..... ..+... ..+..+... .++.+++.++.++.|+.||..+|+.+=.....
T Consensus 88 ~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h 167 (493)
T PTZ00421 88 PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCH 167 (493)
T ss_pred CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCC
Confidence 55799999999999999887643211 112211 122222111 23345555666789999999999876555433
Q ss_pred CccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEE
Q 002016 126 GSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (981)
Q Consensus 126 ~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v 204 (981)
...+ ....+- ..+..++.. .|+.+..+|..+|+...+.....+.. ...+......+.++.+|+.+.....+
T Consensus 168 ~~~V-~sla~s------pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~-~~~~~w~~~~~~ivt~G~s~s~Dr~V 239 (493)
T PTZ00421 168 SDQI-TSLEWN------LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK-SQRCLWAKRKDLIITLGCSKSQQRQI 239 (493)
T ss_pred CCce-EEEEEE------CCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCc-ceEEEEcCCCCeEEEEecCCCCCCeE
Confidence 3222 112121 113333334 49999999999999887765433221 11222223455666666654334457
Q ss_pred EEEECCCCceee-eeeeeccCCccCceEEE-cCcEEEEEECCCCeEEEEEeecCe
Q 002016 205 YQINAMNGELLN-HETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 205 ~aLd~~tG~~lw-~~~v~~p~~~~~~~~~v-g~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
...|+.+..... ...+....... .+.+- +++.++......+.+++.++.++.
T Consensus 240 klWDlr~~~~p~~~~~~d~~~~~~-~~~~d~d~~~L~lggkgDg~Iriwdl~~~~ 293 (493)
T PTZ00421 240 MLWDTRKMASPYSTVDLDQSSALF-IPFFDEDTNLLYIGSKGEGNIRCFELMNER 293 (493)
T ss_pred EEEeCCCCCCceeEeccCCCCceE-EEEEcCCCCEEEEEEeCCCeEEEEEeeCCc
Confidence 777877654222 11111111110 11111 334444443346788899998877
No 36
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.28 E-value=3 Score=47.74 Aligned_cols=222 Identities=13% Similarity=0.184 Sum_probs=115.1
Q ss_pred ccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCC----CEEEEE--ECCCCccceEEEcCCCccee-eeeeeecCe
Q 002016 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEE----NVIASL--DLRHGEIFWRHVLGINDVVD-GIDIALGKY 97 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~----g~L~AL--d~~tG~ivWR~~l~~~~~i~-~l~~~~~~~ 97 (981)
+++.|+....+... ....+.+-....+++.+|++++. |.|.++ +.++|++.-.......+.-. .+....++.
T Consensus 21 d~~~g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~ 99 (345)
T PF10282_consen 21 DEETGTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGR 99 (345)
T ss_dssp ETTTTEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSS
T ss_pred cCCCCCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCC
Confidence 44556654444321 11122232333467889999884 566555 55557776655544221111 121123556
Q ss_pred EEEEEcc-CCEEEEEeCCC-CcEeEEEecc-----Cccc--c-CCc--eeecccccccCCcEEEEE--eCCEEEEEECCC
Q 002016 98 VITLSSD-GSTLRAWNLPD-GQMVWESFLR-----GSKH--S-KPL--LLVPTNLKVDKDSLILVS--SKGCLHAVSSID 163 (981)
Q Consensus 98 vV~Vs~~-g~~V~A~da~t-G~llWe~~~~-----~~~~--s-~~~--~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~t 163 (981)
.++++.. ++.|..++..+ |++.-..... ++.. . .+- .+.. ...++.++|. ...+|+.++...
T Consensus 100 ~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~----~pdg~~v~v~dlG~D~v~~~~~~~ 175 (345)
T PF10282_consen 100 FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVF----SPDGRFVYVPDLGADRVYVYDIDD 175 (345)
T ss_dssp EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-----TTSSEEEEEETTTTEEEEEEE-T
T ss_pred EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEE----CCCCCEEEEEecCCCEEEEEEEeC
Confidence 7776653 67898888875 8777664321 1100 0 000 1110 0124567774 456777666655
Q ss_pred Cc--EeEEE--eccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeec-cCCccC-----ceEEE
Q 002016 164 GE--ILWTR--DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF-SGGFVG-----DVALV 233 (981)
Q Consensus 164 G~--~~W~~--~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~-p~~~~~-----~~~~v 233 (981)
+. ..-.. ..+.+ ..|+.+....++..+|++.... ..+.++.++..+|+......+.. |.+..+ .+.+-
T Consensus 176 ~~~~l~~~~~~~~~~G-~GPRh~~f~pdg~~~Yv~~e~s-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 176 DTGKLTPVDSIKVPPG-SGPRHLAFSPDGKYAYVVNELS-NTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp TS-TEEEEEEEECSTT-SSEEEEEE-TTSSEEEEEETTT-TEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred CCceEEEeeccccccC-CCCcEEEEcCCcCEEEEecCCC-CcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 54 33211 22222 2377776555667888876544 45666666766887765555443 333322 22222
Q ss_pred -cCcEEEEEECCCCeEEEEEe
Q 002016 234 -SSDTLVTLDTTRSILVTVSF 253 (981)
Q Consensus 234 -g~~~lv~~d~~~g~L~v~~L 253 (981)
.+..+++.++..+++.+.++
T Consensus 254 pdg~~lyvsnr~~~sI~vf~~ 274 (345)
T PF10282_consen 254 PDGRFLYVSNRGSNSISVFDL 274 (345)
T ss_dssp TTSSEEEEEECTTTEEEEEEE
T ss_pred cCCCEEEEEeccCCEEEEEEE
Confidence 34577778877788888888
No 37
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.08 E-value=0.15 Score=62.24 Aligned_cols=196 Identities=16% Similarity=0.224 Sum_probs=114.3
Q ss_pred cccccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEE
Q 002016 22 SLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL 101 (981)
Q Consensus 22 AlyedqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~V 101 (981)
|-.....|.+-|||.+-++.... +-+- .-++..+...+.+-|.++|...|...+..+ ..++...+..++.++
T Consensus 60 AsL~~~tGei~WRqvl~~~~~~~--~~~~----~~~iS~dg~~lr~wn~~~g~l~~~i~l~~g--~~~~~~~v~~~i~v~ 131 (910)
T KOG2103|consen 60 ASLNLRTGEIIWRQVLEPKTSGL--GVPL----TNTISVDGRYLRSWNTNNGILDWEIELADG--FKGLLLEVNKGIAVL 131 (910)
T ss_pred heecccCCcEEEEEeccCCCccc--Ccce----eEEEccCCcEEEeecCCCceeeeecccccc--cceeEEEEccceEEE
Confidence 33344579999999874443221 1111 125555666899999999999999988766 222212344444444
Q ss_pred EccCCEEEEEeCCCCcEeEEEeccCccc--cCCceeecccccccCCcEEEEE-----eCCEEEEEECCCCcEe-EEEecc
Q 002016 102 SSDGSTLRAWNLPDGQMVWESFLRGSKH--SKPLLLVPTNLKVDKDSLILVS-----SKGCLHAVSSIDGEIL-WTRDFA 173 (981)
Q Consensus 102 s~~g~~V~A~da~tG~llWe~~~~~~~~--s~~~~~v~~~~~~~~~~~V~V~-----~~g~l~aLd~~tG~~~-W~~~~~ 173 (981)
++ |....|.+.|+..+..... -+++.. ...+.|+++ ++-.+++++..+|++. |+....
T Consensus 132 ~g-------~~~~~g~l~w~~~~~~~~~~~~q~~~~-------~~t~vvy~~~~l~~s~~~V~~~~~~~g~v~~~~~~v~ 197 (910)
T KOG2103|consen 132 NG-------HTRKFGELKWVESFSISIEEDLQDAKI-------YGTDVVYVLGLLKRSGSCVQQVFSDDGEVTGPQSTVL 197 (910)
T ss_pred cc-------eeccccceeehhhccccchhHHHHhhh-------ccCcEEEEEEEEecCCceEEEEEccCCcEecceeeee
Confidence 43 8899999999998875432 011111 123445542 3668999999999987 988887
Q ss_pred CcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeee-eeeccCCccCceEEE-cC--cEEEEEECCCC
Q 002016 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE-TAAFSGGFVGDVALV-SS--DTLVTLDTTRS 246 (981)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~-~v~~p~~~~~~~~~v-g~--~~lv~~d~~~g 246 (981)
.|......| +...+.++ ++..|. +..+|...++.--.+ ....-..+.++...+ |+ +.++|+++.++
T Consensus 198 ~pw~~~~~c--~~~k~~vl-~~s~g~----l~s~di~~~~~~~~q~~~e~l~~l~g~~i~~~g~~~~~~V~V~s~~~ 267 (910)
T KOG2103|consen 198 GPWFKVLSC--STDKEVVL-VCSNGT----LISLDISSQKVQISQLLAEILLPLTGDLILLDGNKHTAMVSVNSSSN 267 (910)
T ss_pred cCccccccc--ccccceEE-EcCCCC----eEEEEEEeeccchhhhhhhhhhccCCceEEecCCCceeEEEEecCCC
Confidence 777655444 23444444 455553 566666544332111 111112334444444 32 37888876533
No 38
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=95.75 E-value=0.017 Score=42.25 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=24.1
Q ss_pred ecCeEEEEEccCCEEEEEeCCCCcEeEEE
Q 002016 94 LGKYVITLSSDGSTLRAWNLPDGQMVWES 122 (981)
Q Consensus 94 ~~~~vV~Vs~~g~~V~A~da~tG~llWe~ 122 (981)
..++.+++++.++.++|+|+++|+++|+.
T Consensus 4 ~~~~~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 4 LSDGTVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EECCEEEEEcCCCEEEEEEcccCcEEEEc
Confidence 34557777777789999999999999986
No 39
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=95.72 E-value=3.4 Score=51.07 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=111.0
Q ss_pred CCEEEEEcCCCEEEEEECCCC-ccceEEE--cCCC-ccee-eeeeee-cCeEEEEEccCCEEEEEeCCCCcEeEEEeccC
Q 002016 53 RKRVVVSTEENVIASLDLRHG-EIFWRHV--LGIN-DVVD-GIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG-~ivWR~~--l~~~-~~i~-~l~~~~-~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
++.++..+.+|.+.-.+-.++ +++--+. ++.. +-|. .++++. =+.+++ |..+|.+.-||..+|+++.+++-..
T Consensus 124 Ge~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvv-Gs~~G~lql~Nvrt~K~v~~f~~~~ 202 (910)
T KOG1539|consen 124 GEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVV-GSSQGRLQLWNVRTGKVVYTFQEFF 202 (910)
T ss_pred cceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEE-eecCCcEEEEEeccCcEEEEecccc
Confidence 455677777777776666654 2211110 0111 1122 122222 234444 5556799999999999999998765
Q ss_pred ccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEE
Q 002016 127 SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (981)
Q Consensus 127 ~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~ 205 (981)
... ..+.++ ++ =++|.+. .+|+++-+|.+.|+.+=+++.+.+..+ .+.-.+++..+.+.|-. .+.+.
T Consensus 203 s~I----T~ieqs-Pa--LDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~Vt--slSFrtDG~p~las~~~---~G~m~ 270 (910)
T KOG1539|consen 203 SRI----TAIEQS-PA--LDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVT--SLSFRTDGNPLLASGRS---NGDMA 270 (910)
T ss_pred cce----eEeccC-Cc--ceEEEEeccCceEEEEEcccCcEEEEEEcccccee--EEEeccCCCeeEEeccC---CceEE
Confidence 322 112111 11 2344444 699999999999999999988744432 22222456666665543 23588
Q ss_pred EEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeecCe
Q 002016 206 QINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 206 aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
-.|+..-+.+|...-+...++.+..++.|..+++..-.+ .+|++-...+|+
T Consensus 271 ~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~D-nSlk~~vfD~~d 321 (910)
T KOG1539|consen 271 FWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGAD-NSLKVWVFDSGD 321 (910)
T ss_pred EEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCC-CceeEEEeeCCC
Confidence 889988888898864444555554455566666654433 455544444443
No 40
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.67 E-value=0.45 Score=53.47 Aligned_cols=156 Identities=13% Similarity=0.114 Sum_probs=94.6
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccc--
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH-- 129 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~-- 129 (981)
++++++++.++|.|.+.|++||+++-+..-...............-+++-+..++.+...+..+|+++--..-..+.+
T Consensus 201 dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~ 280 (399)
T KOG0296|consen 201 DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKP 280 (399)
T ss_pred CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccc
Confidence 588899999999999999999999988663222111112112233344435556788999999999998777433222
Q ss_pred -----cCCceeecccccccCCcEEEE-E-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCcee
Q 002016 130 -----SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQF 202 (981)
Q Consensus 130 -----s~~~~~v~~~~~~~~~~~V~V-~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~ 202 (981)
.......|... .=-+.+ . -+|++.-+|.+.-+++-....+.+.. ++.-. ....+|..+.+|
T Consensus 281 ~~e~~~esve~~~~ss----~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~---~l~w~-~t~~l~t~c~~g---- 348 (399)
T KOG0296|consen 281 SQEELDESVESIPSSS----KLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVT---KLKWL-NTDYLLTACANG---- 348 (399)
T ss_pred cchhhhhhhhhccccc----ccchhhcccccceEEEEecccchhheeccCCCceE---EEEEc-CcchheeeccCc----
Confidence 01111111110 000111 1 28888888877655555555444422 22211 245667666666
Q ss_pred EEEEEECCCCceeeeee
Q 002016 203 HAYQINAMNGELLNHET 219 (981)
Q Consensus 203 ~v~aLd~~tG~~lw~~~ 219 (981)
+|+..|++||+.+..++
T Consensus 349 ~v~~wDaRtG~l~~~y~ 365 (399)
T KOG0296|consen 349 KVRQWDARTGQLKFTYT 365 (399)
T ss_pred eEEeeeccccceEEEEe
Confidence 69999999999998884
No 41
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=95.63 E-value=5.6 Score=45.54 Aligned_cols=196 Identities=10% Similarity=0.144 Sum_probs=106.4
Q ss_pred EEEEcCC----CE--EEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEc----cCCEEEEEeCC--CCcEeEEEe
Q 002016 56 VVVSTEE----NV--IASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----DGSTLRAWNLP--DGQMVWESF 123 (981)
Q Consensus 56 VyvaT~~----g~--L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~----~g~~V~A~da~--tG~llWe~~ 123 (981)
+|+++.. +- ++.+|.++|++--.+.+........+.....+..+|+.. ..+.|.+|+.. +|++.--.+
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~ 81 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS 81 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee
Confidence 6777765 34 455666889877666543322222231223555666543 24677666654 488877666
Q ss_pred ccCccccCCceeecccccccCCcEEEEE--eCCEEEEEECCC-CcEeEE-----Eecc--Cc----ceeeeEEEEeecCC
Q 002016 124 LRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSID-GEILWT-----RDFA--AE----SVEVQQVIQLDESD 189 (981)
Q Consensus 124 ~~~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~t-G~~~W~-----~~~~--~~----~~~~~~vv~s~~~~ 189 (981)
..... ..++.+.. ...++.+++. .+|.+..++..+ |++.-. .... .+ ..-+-++....++.
T Consensus 82 ~~~~g--~~p~~i~~---~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~ 156 (345)
T PF10282_consen 82 VPSGG--SSPCHIAV---DPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR 156 (345)
T ss_dssp EEESS--SCEEEEEE---CTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS
T ss_pred eccCC--CCcEEEEE---ecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCC
Confidence 54221 12222211 1235577775 488998888765 765433 2111 11 01133343334556
Q ss_pred eEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEE--cCcEEEEEECCCCeEEEEEee--cCe
Q 002016 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFK--NRK 257 (981)
Q Consensus 190 ~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~v--g~~~lv~~d~~~g~L~v~~L~--sg~ 257 (981)
.+|+..+ |...+.++.+|..+|++.....+..+.+-....+.. .+..+++++...+.+.+..+. +|.
T Consensus 157 ~v~v~dl-G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~ 227 (345)
T PF10282_consen 157 FVYVPDL-GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGS 227 (345)
T ss_dssp EEEEEET-TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred EEEEEec-CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCc
Confidence 7776544 555677777777777765545555554332233333 445777888778899999998 565
No 42
>PTZ00420 coronin; Provisional
Probab=95.62 E-value=4.3 Score=49.77 Aligned_cols=193 Identities=10% Similarity=0.082 Sum_probs=102.2
Q ss_pred CCEEEEEcCCCEEEEEECCCCccce------EEEcCCC-cceeeeeee-ecCeEEEEEccCCEEEEEeCCCCcEeEEEec
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFW------RHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivW------R~~l~~~-~~i~~l~~~-~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~ 124 (981)
+..++.++.+|.|.-.|..++...- ...+... ..+..+... .+..+++.++.++.++-||..+|+..++...
T Consensus 87 ~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~ 166 (568)
T PTZ00420 87 SEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM 166 (568)
T ss_pred CCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec
Confidence 4578899999999999988764311 1122211 123222111 2344444455678999999999999887764
Q ss_pred cCccccCCceeecccccccCCcEEEE-E-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEE---eecCCeEEEEEecCC
Q 002016 125 RGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ---LDESDQIYVVGYAGS 199 (981)
Q Consensus 125 ~~~~~s~~~~~v~~~~~~~~~~~V~V-~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~---s~~~~~Vyvvg~~g~ 199 (981)
..... .+.+- .++.+++ . .++.+..+|..+|+.+-++....+......+.. +..++.+...|+.+.
T Consensus 167 ~~~V~--Slsws-------pdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~ 237 (568)
T PTZ00420 167 PKKLS--SLKWN-------IKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN 237 (568)
T ss_pred CCcEE--EEEEC-------CCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC
Confidence 33221 12111 1333444 4 389999999999998866544333211111110 123445555566653
Q ss_pred ceeEEEEEECCC-CceeeeeeeeccCCccCceEEE--cCc-EEEEEECCCCeEEEEEeecCe
Q 002016 200 SQFHAYQINAMN-GELLNHETAAFSGGFVGDVALV--SSD-TLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 200 ~~~~v~aLd~~t-G~~lw~~~v~~p~~~~~~~~~v--g~~-~lv~~d~~~g~L~v~~L~sg~ 257 (981)
+...+.-.|+.+ ++++-...+....+ .-..+. ..+ ++++.. .++.+++-++..+.
T Consensus 238 ~~R~VkLWDlr~~~~pl~~~~ld~~~~--~L~p~~D~~tg~l~lsGk-GD~tIr~~e~~~~~ 296 (568)
T PTZ00420 238 NMREMKLWDLKNTTSALVTMSIDNASA--PLIPHYDESTGLIYLIGK-GDGNCRYYQHSLGS 296 (568)
T ss_pred CccEEEEEECCCCCCceEEEEecCCcc--ceEEeeeCCCCCEEEEEE-CCCeEEEEEccCCc
Confidence 333466677774 55554332222111 001111 222 344443 45677777776664
No 43
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=95.51 E-value=0.49 Score=56.77 Aligned_cols=151 Identities=18% Similarity=0.256 Sum_probs=78.9
Q ss_pred CCEEEEEcC-----CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCc
Q 002016 53 RKRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (981)
Q Consensus 53 ~~~VyvaT~-----~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~ 127 (981)
.+.+|+.+. ....+++| .+|.++|...+....... +....++.+++.++ ..++.+|. .|+++|++.++.+
T Consensus 113 ~~gl~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~-~~~l~nG~ll~~~~--~~~~e~D~-~G~v~~~~~l~~~ 187 (477)
T PF05935_consen 113 EDGLYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS-FKQLPNGNLLIGSG--NRLYEIDL-LGKVIWEYDLPGG 187 (477)
T ss_dssp TT-EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS-EEE-TTS-EEEEEB--TEEEEE-T-T--EEEEEE--TT
T ss_pred CCcEEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce-eeEcCCCCEEEecC--CceEEEcC-CCCEEEeeecCCc
Confidence 445777666 67899999 589999999886652211 21123344444333 68999997 6999999999875
Q ss_pred c--ccCCceeecccccccCCcEEEEEe--------------CCEEEEEECCCCcEeEEEeccCc---cee----------
Q 002016 128 K--HSKPLLLVPTNLKVDKDSLILVSS--------------KGCLHAVSSIDGEILWTRDFAAE---SVE---------- 178 (981)
Q Consensus 128 ~--~s~~~~~v~~~~~~~~~~~V~V~~--------------~g~l~aLd~~tG~~~W~~~~~~~---~~~---------- 178 (981)
. ..=+.... ..++.++... ...+.-+| .+|+++|+|+...- ...
T Consensus 188 ~~~~HHD~~~l------~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~ 260 (477)
T PF05935_consen 188 YYDFHHDIDEL------PNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGD 260 (477)
T ss_dssp EE-B-S-EEE-------TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSS
T ss_pred ccccccccEEC------CCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccc
Confidence 3 10111111 2233332222 46799999 99999999976421 000
Q ss_pred ---------eeEE--E-EeecCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 179 ---------VQQV--I-QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 179 ---------~~~v--v-~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
...+ + .-..++.+++.+-.-+ .|..+|..||++.|-.
T Consensus 261 ~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s---~V~~Id~~t~~i~Wil 309 (477)
T PF05935_consen 261 ISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQS---AVIKIDYRTGKIKWIL 309 (477)
T ss_dssp SS-SSTTSBS--EEEEEEETTTTEEEEEETTT----EEEEEE-TTS-EEEEE
T ss_pred cccCCCCCCccccCccEEeCCCCeEEEEcCcce---EEEEEECCCCcEEEEe
Confidence 0011 1 1123566665443322 5899999999999987
No 44
>PHA02713 hypothetical protein; Provisional
Probab=94.71 E-value=1.9 Score=52.90 Aligned_cols=171 Identities=9% Similarity=0.127 Sum_probs=93.9
Q ss_pred CCCEEEEEcCC-------CEEEEEECCCCccceEEEcCCCcce-e-eeeeeecCeEEEEEccC-----CEEEEEeCCCCc
Q 002016 52 GRKRVVVSTEE-------NVIASLDLRHGEIFWRHVLGINDVV-D-GIDIALGKYVITLSSDG-----STLRAWNLPDGQ 117 (981)
Q Consensus 52 ~~~~VyvaT~~-------g~L~ALd~~tG~ivWR~~l~~~~~i-~-~l~~~~~~~vV~Vs~~g-----~~V~A~da~tG~ 117 (981)
-++.||+..+. +.+..+|+++.. |+..-+-+..- . +. ++.++.++++||.+ ..+..||+.+.
T Consensus 302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~--W~~~~~m~~~R~~~~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~- 377 (557)
T PHA02713 302 VDNEIIIAGGYNFNNPSLNKVYKINIENKI--HVELPPMIKNRCRFSL-AVIDDTIYAIGGQNGTNVERTIECYTMGDD- 377 (557)
T ss_pred ECCEEEEEcCCCCCCCccceEEEEECCCCe--EeeCCCCcchhhceeE-EEECCEEEEECCcCCCCCCceEEEEECCCC-
Confidence 47789988663 358889998875 97544322111 1 22 34677777777753 34889999876
Q ss_pred EeEEEeccCccccCCceeecccccccCCcEEEEEe--C-----------------------CEEEEEECCCCcEeEEEec
Q 002016 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K-----------------------GCLHAVSSIDGEILWTRDF 172 (981)
Q Consensus 118 llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~-----------------------g~l~aLd~~tG~~~W~~~~ 172 (981)
.|+.-.+-+..-..... +.-++.+++.+ + ..+.++|+.+. .|+.-.
T Consensus 378 -~W~~~~~mp~~r~~~~~------~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td--~W~~v~ 448 (557)
T PHA02713 378 -KWKMLPDMPIALSSYGM------CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN--IWETLP 448 (557)
T ss_pred -eEEECCCCCcccccccE------EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC--eEeecC
Confidence 58863321110000001 12256677753 1 24778888776 588654
Q ss_pred cCcce-eeeEEEEeecCCeEEEEEecCC-c--eeEEEEEECCC-CceeeeeeeeccCCccC-ceEEEcCcEEE
Q 002016 173 AAESV-EVQQVIQLDESDQIYVVGYAGS-S--QFHAYQINAMN-GELLNHETAAFSGGFVG-DVALVSSDTLV 239 (981)
Q Consensus 173 ~~~~~-~~~~vv~s~~~~~Vyvvg~~g~-~--~~~v~aLd~~t-G~~lw~~~v~~p~~~~~-~~~~vg~~~lv 239 (981)
+.+.. ....+ +.-++.+|++|...+ . .-.+..+|+.+ . .|+.--..|..... ...++++.+++
T Consensus 449 ~m~~~r~~~~~--~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~r~~~~~~~~~~~iyv 517 (557)
T PHA02713 449 NFWTGTIRPGV--VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESRLSALHTILHDNTIMM 517 (557)
T ss_pred CCCcccccCcE--EEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcccccceeEEECCEEEE
Confidence 43211 01112 346889999875321 1 11367899987 4 48875455544443 23333444444
No 45
>PTZ00421 coronin; Provisional
Probab=94.69 E-value=3.7 Score=49.59 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=82.7
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~ 132 (981)
++.++.++.++.|.-.|.++|+.+=...- ..+.+..+....++..++.++.++.++.||+.+|+.+.+...........
T Consensus 138 ~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~ 216 (493)
T PTZ00421 138 MNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQR 216 (493)
T ss_pred CCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceE
Confidence 35688889999999999999976433221 11223333222234455556667899999999999988766543321001
Q ss_pred ceeecccccccCCcEEEEEe-----CCEEEEEECCCCcEeEE-EeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEE
Q 002016 133 LLLVPTNLKVDKDSLILVSS-----KGCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (981)
Q Consensus 133 ~~~v~~~~~~~~~~~V~V~~-----~g~l~aLd~~tG~~~W~-~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~a 206 (981)
.... ..++.++..+ ++.+.-.|..+...... ........ ........+.+.+|+.|. |. ..+..
T Consensus 217 ~~w~------~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~-~~~~~~d~d~~~L~lggk-gD--g~Iri 286 (493)
T PTZ00421 217 CLWA------KRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSA-LFIPFFDEDTNLLYIGSK-GE--GNIRC 286 (493)
T ss_pred EEEc------CCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCc-eEEEEEcCCCCEEEEEEe-CC--CeEEE
Confidence 1111 1123333321 56777777776543222 22111111 001111223445555442 22 24777
Q ss_pred EECCCCceeeee
Q 002016 207 INAMNGELLNHE 218 (981)
Q Consensus 207 Ld~~tG~~lw~~ 218 (981)
+|..+|++.-..
T Consensus 287 wdl~~~~~~~~~ 298 (493)
T PTZ00421 287 FELMNERLTFCS 298 (493)
T ss_pred EEeeCCceEEEe
Confidence 788888876543
No 46
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.65 E-value=7.9 Score=46.97 Aligned_cols=188 Identities=12% Similarity=0.130 Sum_probs=115.4
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcC----CCcceeeeeeee-cCeEEEEEccCCEEEEEeCCCCcEeEEEeccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLG----INDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~----~~~~i~~l~~~~-~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
.++.+-++=.+|.|---|+..+ |-+... .+..+.++ +-. ++.+..++. .|.+.-||..+|+++-+....+
T Consensus 36 kS~~lAvsRt~g~IEiwN~~~~---w~~~~vi~g~~drsIE~L-~W~e~~RLFS~g~-sg~i~EwDl~~lk~~~~~d~~g 110 (691)
T KOG2048|consen 36 KSNQLAVSRTDGNIEIWNLSNN---WFLEPVIHGPEDRSIESL-AWAEGGRLFSSGL-SGSITEWDLHTLKQKYNIDSNG 110 (691)
T ss_pred cCCceeeeccCCcEEEEccCCC---ceeeEEEecCCCCceeeE-EEccCCeEEeecC-CceEEEEecccCceeEEecCCC
Confidence 3455666667788888888774 776542 12245555 234 555555444 4699999999999999988776
Q ss_pred ccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeE-EEEEecCCceeEE
Q 002016 127 SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQI-YVVGYAGSSQFHA 204 (981)
Q Consensus 127 ~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~V-yvvg~~g~~~~~v 204 (981)
... ..+..+ ...+.+.|. .+|.++-++...|+...+............+ +-.++.. .+.|-.+ +.+
T Consensus 111 g~I----Wsiai~---p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl--sw~~~~~~i~~Gs~D---g~I 178 (691)
T KOG2048|consen 111 GAI----WSIAIN---PENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL--SWNPTGTKIAGGSID---GVI 178 (691)
T ss_pred cce----eEEEeC---CccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE--EecCCccEEEecccC---ceE
Confidence 543 222111 123345566 4889999999999988887666432212222 2223222 2333333 368
Q ss_pred EEEECCCCceeeeeeeeccC--CccC----ceEEEcCcEEEEEECCCCeEEEEEeecCe
Q 002016 205 YQINAMNGELLNHETAAFSG--GFVG----DVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 205 ~aLd~~tG~~lw~~~v~~p~--~~~~----~~~~vg~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
.+.|+.+|+.+--.+..... .... ++.++..+.++|.|+ .|....=|-..|+
T Consensus 179 riwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-~G~V~FWd~~~gT 236 (691)
T KOG2048|consen 179 RIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-AGTVTFWDSIFGT 236 (691)
T ss_pred EEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecC-CceEEEEcccCcc
Confidence 99999999988722211111 1011 344557889999995 5888777777776
No 47
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.54 E-value=2.3 Score=45.47 Aligned_cols=194 Identities=11% Similarity=0.092 Sum_probs=109.2
Q ss_pred cCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccc-
Q 002016 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH- 129 (981)
Q Consensus 51 ~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~- 129 (981)
.+++...+...+.+|.--||..|..+=.+.=...+-.+ +....++--+.-+|.+..++.||.+||++.-+++...+..
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD-~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLD-AALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVN 105 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCceeee-ccccccccccccCCCCceEEEEEcccCeeeeecccccceee
Confidence 35777888888889999999999887665432221111 1112222233324456789999999999998887654432
Q ss_pred --------------------------c---CCceeecccccccCCc---------EEEEE-eCCEEEEEECCCCcEeEEE
Q 002016 130 --------------------------S---KPLLLVPTNLKVDKDS---------LILVS-SKGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 130 --------------------------s---~~~~~v~~~~~~~~~~---------~V~V~-~~g~l~aLd~~tG~~~W~~ 170 (981)
+ .+..+. .. ..|+ .++.. .||++..+|...|..--.+
T Consensus 106 tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQil--de--a~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy 181 (307)
T KOG0316|consen 106 TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQIL--DE--AKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDY 181 (307)
T ss_pred EEEecCcceEEEeccccceeEEEEcccCCCCccchh--hh--hcCceeEEEecccEEEeeccCCcEEEEEeecceeehhh
Confidence 0 111111 00 0111 12223 3889999998888765444
Q ss_pred eccCcceeeeEEE-EeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEE
Q 002016 171 DFAAESVEVQQVI-QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILV 249 (981)
Q Consensus 171 ~~~~~~~~~~~vv-~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~ 249 (981)
-.. |..++ .+.+++-+.+.++.+ .+.-||-.||+++-.+.-......--+|-+-.....|..-+..|..+
T Consensus 182 ~g~-----pit~vs~s~d~nc~La~~l~s----tlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 182 FGH-----PITSVSFSKDGNCSLASSLDS----TLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred cCC-----cceeEEecCCCCEEEEeeccc----eeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEE
Confidence 221 11222 123455555545544 47889999999997774333222211333333333344444678888
Q ss_pred EEEeecCee
Q 002016 250 TVSFKNRKI 258 (981)
Q Consensus 250 v~~L~sg~~ 258 (981)
.-+|..+.+
T Consensus 253 ~wdLvd~~~ 261 (307)
T KOG0316|consen 253 FWDLVDETQ 261 (307)
T ss_pred EEEecccee
Confidence 888887763
No 48
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=2.1 Score=51.68 Aligned_cols=159 Identities=16% Similarity=0.170 Sum_probs=89.7
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCeE-EEEEccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYV-ITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~~l~~~~~~~v-V~Vs~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
..+.+-++.++|++.=++-..|++.....|... ..+-.+ .-...+. ++.|..|+.+++||+.+|..+-.....-..+
T Consensus 121 ~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLsl-sw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l 199 (691)
T KOG2048|consen 121 ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSL-SWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRL 199 (691)
T ss_pred ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEE-EecCCccEEEecccCceEEEEEcCCCceEEEeeeccccc
Confidence 356788999999999999999999999999776 233233 1233444 4545567899999999999887433332222
Q ss_pred cC-CceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEE
Q 002016 130 SK-PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (981)
Q Consensus 130 s~-~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aL 207 (981)
++ ...++ .+..--.++.++-. +.|.|.-.|.++|.+.=++..-.... ..+.-....+.|+..|.++ ++.-+
T Consensus 200 ~k~~~~iV-WSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adV--l~Lav~~~~d~vfsaGvd~----~ii~~ 272 (691)
T KOG2048|consen 200 SKREPTIV-WSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADV--LALAVADNEDRVFSAGVDP----KIIQY 272 (691)
T ss_pred ccCCceEE-EEEEEeecCcEEEecCCceEEEEcccCcchhhhhhhhhcce--eEEEEcCCCCeEEEccCCC----ceEEE
Confidence 22 11111 00000012222222 23444444444444333332222221 1122123557888888777 58888
Q ss_pred ECCCCceeeee
Q 002016 208 NAMNGELLNHE 218 (981)
Q Consensus 208 d~~tG~~lw~~ 218 (981)
...++.--|..
T Consensus 273 ~~~~~~~~wv~ 283 (691)
T KOG2048|consen 273 SLTTNKSEWVI 283 (691)
T ss_pred EecCCccceee
Confidence 87777666766
No 49
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.86 E-value=2.1 Score=46.13 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=94.9
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
.++.+.-+++++.|.--|-+||.++=+..+..+ +..+.+.-++++++ .++|+.|.-||+.+=.++=++.++-.+.
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~--VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P~nV~-- 228 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP--VTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMPCNVE-- 228 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCC--CcceeeccCCCEEE-EecCceeEEeccccccceeeccCccccc--
Confidence 355566668889999999999999988888766 44454444556666 4567899999999999998888775443
Q ss_pred CceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEEC
Q 002016 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~ 209 (981)
++.+-| .+ -++|. .++.++.+|-.||+.+=.+..... .|..++.-.-+|. ++|.--
T Consensus 229 SASL~P-----~k--~~fVaGged~~~~kfDy~TgeEi~~~nkgh~--gpVhcVrFSPdGE-------------~yAsGS 286 (334)
T KOG0278|consen 229 SASLHP-----KK--EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHF--GPVHCVRFSPDGE-------------LYASGS 286 (334)
T ss_pred cccccC-----CC--ceEEecCcceEEEEEeccCCceeeecccCCC--CceEEEEECCCCc-------------eeeccC
Confidence 222332 22 35664 489999999999987766522211 1223332223334 555555
Q ss_pred CCCce-eeeeeeeccC
Q 002016 210 MNGEL-LNHETAAFSG 224 (981)
Q Consensus 210 ~tG~~-lw~~~v~~p~ 224 (981)
++|.+ +||....-+.
T Consensus 287 EDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 287 EDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceEEEEEecCCCch
Confidence 67775 5998654443
No 50
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=93.33 E-value=7 Score=48.47 Aligned_cols=158 Identities=14% Similarity=0.169 Sum_probs=104.7
Q ss_pred eeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEec
Q 002016 45 VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 45 ~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~ 124 (981)
.+| |++.=++|.+++.+|.+.-+|.++|+++...+--. ..|..+..+-.=|+|.||-.+|+|.-+|...|+.+-+++.
T Consensus 165 l~H-P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~ 242 (910)
T KOG1539|consen 165 LLH-PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFF-SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQ 242 (910)
T ss_pred Eec-chhheeeEEEeecCCcEEEEEeccCcEEEEecccc-cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEc
Confidence 344 55556789999999999999999999999865322 2233332222336888888788999999999999999998
Q ss_pred cCccccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccC-cceeeeEEEEeecCCeEEEEEecCCce
Q 002016 125 RGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAA-ESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 125 ~~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~-~~~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
+-+.. ....+. .+ +..+++. ..|.+.-.|.+.-+..|...... +...-... ..+..|.+ +..++..
T Consensus 243 d~g~V-tslSFr-----tD-G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~f---l~~epVl~-ta~~DnS 311 (910)
T KOG1539|consen 243 DWGRV-TSLSFR-----TD-GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATF---LPGEPVLV-TAGADNS 311 (910)
T ss_pred cccce-eEEEec-----cC-CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCccccee---cCCCceEe-eccCCCc
Confidence 63322 233333 12 3345553 47899999999999999877543 22211122 13334443 3333346
Q ss_pred eEEEEEECCCCcee
Q 002016 202 FHAYQINAMNGELL 215 (981)
Q Consensus 202 ~~v~aLd~~tG~~l 215 (981)
+++..+|..+|.+.
T Consensus 312 lk~~vfD~~dg~pR 325 (910)
T KOG1539|consen 312 LKVWVFDSGDGVPR 325 (910)
T ss_pred eeEEEeeCCCCcch
Confidence 88999998788543
No 51
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.32 E-value=6.4 Score=51.98 Aligned_cols=200 Identities=11% Similarity=0.113 Sum_probs=101.9
Q ss_pred CCEEEEEcCC-CEEEEEECCCCccceEEE-------cCCCc--c---e---eeeeeeecCeEEEEE-ccCCEEEEEeCCC
Q 002016 53 RKRVVVSTEE-NVIASLDLRHGEIFWRHV-------LGIND--V---V---DGIDIALGKYVITLS-SDGSTLRAWNLPD 115 (981)
Q Consensus 53 ~~~VyvaT~~-g~L~ALd~~tG~ivWR~~-------l~~~~--~---i---~~l~~~~~~~vV~Vs-~~g~~V~A~da~t 115 (981)
++.+||++.. +.|..+|..+|.+.=-.- ...+. . + .++.....++.++|+ ..+++|+-||..+
T Consensus 635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~ 714 (1057)
T PLN02919 635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISD 714 (1057)
T ss_pred CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCC
Confidence 5568998754 578888887775310000 00000 0 0 022111224555555 3457899999999
Q ss_pred CcEeEEEeccCcc------ccCCcee-ecccccccC-CcEEEEE--eCCEEEEEECCCCcEeEEEeccC-----------
Q 002016 116 GQMVWESFLRGSK------HSKPLLL-VPTNLKVDK-DSLILVS--SKGCLHAVSSIDGEILWTRDFAA----------- 174 (981)
Q Consensus 116 G~llWe~~~~~~~------~s~~~~~-v~~~~~~~~-~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~----------- 174 (981)
|...- ....+.. ......+ .|..-.... ++.++|. .+++|..+|.++|...|......
T Consensus 715 g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~ 793 (1057)
T PLN02919 715 GVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGD 793 (1057)
T ss_pred CeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccC
Confidence 87642 1111000 0000000 000001112 3457775 37899999999988765431100
Q ss_pred --c-----ce-eeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeecc---------CCccC--ceEEEcC
Q 002016 175 --E-----SV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS---------GGFVG--DVALVSS 235 (981)
Q Consensus 175 --~-----~~-~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p---------~~~~~--~~~~vg~ 235 (981)
+ .+ .|..+. ...++.+||....++ ++..+|+.+|....-...+.+ ..+.. .+.+..+
T Consensus 794 ~dG~g~~~~l~~P~Gva-vd~dG~LYVADs~N~---rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 794 HDGVGSEVLLQHPLGVL-CAKDGQIYVADSYNH---KIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred CCCchhhhhccCCceee-EeCCCcEEEEECCCC---EEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0 00 133332 234567888665443 688899988877643321111 11111 1222234
Q ss_pred cEEEEEECCCCeEEEEEeecCe
Q 002016 236 DTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 236 ~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
+.++.+|..++.++++++.++.
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCCc
Confidence 4566788888889999998876
No 52
>PHA03098 kelch-like protein; Provisional
Probab=93.14 E-value=6.9 Score=47.53 Aligned_cols=152 Identities=14% Similarity=0.124 Sum_probs=82.2
Q ss_pred CCCEEEEEcCC-------CEEEEEECCCCccceEEEcCCCcc--eeeeeeeecCeEEEEEccC-----CEEEEEeCCCCc
Q 002016 52 GRKRVVVSTEE-------NVIASLDLRHGEIFWRHVLGINDV--VDGIDIALGKYVITLSSDG-----STLRAWNLPDGQ 117 (981)
Q Consensus 52 ~~~~VyvaT~~-------g~L~ALd~~tG~ivWR~~l~~~~~--i~~l~~~~~~~vV~Vs~~g-----~~V~A~da~tG~ 117 (981)
.++.+|+..+. +.+..+|+.+++ |+..-+.+.. ..+. +..++.++++||.+ ..+..||+.++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~R~~~~~-~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~- 368 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKVPELIYPRKNPGV-TVFNNRIYVIGGIYNSISLNTVESWKPGES- 368 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeECCCCCcccccceE-EEECCEEEEEeCCCCCEecceEEEEcCCCC-
Confidence 36677776642 368899998875 8654322211 1122 34567777777743 35788898766
Q ss_pred EeEEEeccCccccCCceeecccccccCCcEEEEEeC--------CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCC
Q 002016 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD 189 (981)
Q Consensus 118 llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~--------g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~ 189 (981)
.|+...+-+..-... ..+.-++.+++.++ ..+..+|..++ .|+.-.+.+.- .....-...++
T Consensus 369 -~W~~~~~lp~~r~~~------~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~-r~~~~~~~~~~ 438 (534)
T PHA03098 369 -KWREEPPLIFPRYNP------CVVNVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPIS-HYGGCAIYHDG 438 (534)
T ss_pred -ceeeCCCcCcCCccc------eEEEECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCcc-ccCceEEEECC
Confidence 487543211100000 01122556777532 35788998776 58865432211 01111124678
Q ss_pred eEEEEEecCCc-----eeEEEEEECCCCceeeeee
Q 002016 190 QIYVVGYAGSS-----QFHAYQINAMNGELLNHET 219 (981)
Q Consensus 190 ~Vyvvg~~g~~-----~~~v~aLd~~tG~~lw~~~ 219 (981)
.+|++|..... --.+..+|+.++ .|+..
T Consensus 439 ~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~ 471 (534)
T PHA03098 439 KIYVIGGISYIDNIKVYNIVESYNPVTN--KWTEL 471 (534)
T ss_pred EEEEECCccCCCCCcccceEEEecCCCC--ceeeC
Confidence 89988753211 123788898776 47653
No 53
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.03 E-value=5.5 Score=43.88 Aligned_cols=155 Identities=14% Similarity=0.161 Sum_probs=87.6
Q ss_pred cCeEEEEEcc--C-CEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEe--CCEEEEEECCCCcEeEE
Q 002016 95 GKYVITLSSD--G-STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWT 169 (981)
Q Consensus 95 ~~~vV~Vs~~--g-~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~g~l~aLd~~tG~~~W~ 169 (981)
+++.++.|++ | +.|+-+|.+||+.+.+..++......+..+. ++.++.++ ++..+.+|.++-+++=+
T Consensus 54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--------~d~l~qLTWk~~~~f~yd~~tl~~~~~ 125 (264)
T PF05096_consen 54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--------GDKLYQLTWKEGTGFVYDPNTLKKIGT 125 (264)
T ss_dssp ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--------TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--------CCEEEEEEecCCeEEEEccccceEEEE
Confidence 5556666542 3 6899999999999999999876654444444 45677763 89999999999988877
Q ss_pred EeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCcc---CceEEEcCcEEEEEECCCC
Q 002016 170 RDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFV---GDVALVSSDTLVTLDTTRS 246 (981)
Q Consensus 170 ~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~---~~~~~vg~~~lv~~d~~~g 246 (981)
++.+.... .+. .++..+++ + +|++ +++-+|+++-+...+.++......- +..-++++.+++=+- .+.
T Consensus 126 ~~y~~EGW---GLt--~dg~~Li~-S-DGS~--~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW-~td 195 (264)
T PF05096_consen 126 FPYPGEGW---GLT--SDGKRLIM-S-DGSS--RLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVW-QTD 195 (264)
T ss_dssp EE-SSS-----EEE--ECSSCEEE-E--SSS--EEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEET-TSS
T ss_pred EecCCcce---EEE--cCCCEEEE-E-CCcc--ceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeC-CCC
Confidence 76654333 221 34445543 3 4543 6888999998887776654321111 112223333332222 234
Q ss_pred eEEEEEeecCeeeEEEEeeccc
Q 002016 247 ILVTVSFKNRKIAFQETHLSNL 268 (981)
Q Consensus 247 ~L~v~~L~sg~~~~~~~~l~~l 268 (981)
.+.++|.++|.+ ...+.++.|
T Consensus 196 ~I~~Idp~tG~V-~~~iDls~L 216 (264)
T PF05096_consen 196 RIVRIDPETGKV-VGWIDLSGL 216 (264)
T ss_dssp EEEEEETTT-BE-EEEEE-HHH
T ss_pred eEEEEeCCCCeE-EEEEEhhHh
Confidence 566666677764 344455443
No 54
>PHA02790 Kelch-like protein; Provisional
Probab=93.01 E-value=11 Score=45.32 Aligned_cols=146 Identities=11% Similarity=0.100 Sum_probs=81.8
Q ss_pred CCCEEEEEcCC------CEEEEEECCCCccceEEEcCCCc--ceeeeeeeecCeEEEEEccC--CEEEEEeCCCCcEeEE
Q 002016 52 GRKRVVVSTEE------NVIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDG--STLRAWNLPDGQMVWE 121 (981)
Q Consensus 52 ~~~~VyvaT~~------g~L~ALd~~tG~ivWR~~l~~~~--~i~~l~~~~~~~vV~Vs~~g--~~V~A~da~tG~llWe 121 (981)
.++.||+..+. ..+...|+++++ |+..-+-+. ...+. ++.++.++++||.+ ..+.-||+.++ .|+
T Consensus 270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~--W~~~~~m~~~r~~~~~-v~~~~~iYviGG~~~~~sve~ydp~~n--~W~ 344 (480)
T PHA02790 270 VGEVVYLIGGWMNNEIHNNAIAVNYISNN--WIPIPPMNSPRLYASG-VPANNKLYVVGGLPNPTSVERWFHGDA--AWV 344 (480)
T ss_pred ECCEEEEEcCCCCCCcCCeEEEEECCCCE--EEECCCCCchhhcceE-EEECCEEEEECCcCCCCceEEEECCCC--eEE
Confidence 36678887653 357788999875 987543321 11122 34677777777742 46888887655 587
Q ss_pred EeccCccccCCceeecccccccCCcEEEEEeC-----CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEe
Q 002016 122 SFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-----GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGY 196 (981)
Q Consensus 122 ~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~-----g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~ 196 (981)
.-.+-+. +. . ....+.-++.++|.++ ..+..+|+.++ .|+...+.+.-...... +.-++.+|++|
T Consensus 345 ~~~~l~~---~r--~-~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~~~r~~~~~-~~~~~~IYv~G- 414 (480)
T PHA02790 345 NMPSLLK---PR--C-NPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTYYPHYKSCA-LVFGRRLFLVG- 414 (480)
T ss_pred ECCCCCC---CC--c-ccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCCCccccceE-EEECCEEEEEC-
Confidence 5322111 11 0 0011123566777532 34667887765 69875443211011111 34688999986
Q ss_pred cCCceeEEEEEECCCCceeeeee
Q 002016 197 AGSSQFHAYQINAMNGELLNHET 219 (981)
Q Consensus 197 ~g~~~~~v~aLd~~tG~~lw~~~ 219 (981)
| .+..+|+.++ .|+.-
T Consensus 415 -G----~~e~ydp~~~--~W~~~ 430 (480)
T PHA02790 415 -R----NAEFYCESSN--TWTLI 430 (480)
T ss_pred -C----ceEEecCCCC--cEeEc
Confidence 3 2567888765 68764
No 55
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=92.87 E-value=2.1 Score=51.51 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=74.6
Q ss_pred ccccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCc-ce--eeeeeeecCeEE
Q 002016 23 LYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VV--DGIDIALGKYVI 99 (981)
Q Consensus 23 lyedqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-~i--~~l~~~~~~~vV 99 (981)
..=|..|.+.|.....+..... |.+ ..++.+++++. +.++.+|. .|+++|...++... .+ +.. ....+.++
T Consensus 131 ~~iD~~G~Vrw~~~~~~~~~~~-~~~--l~nG~ll~~~~-~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~-~l~nGn~L 204 (477)
T PF05935_consen 131 YLIDNNGDVRWYLPLDSGSDNS-FKQ--LPNGNLLIGSG-NRLYEIDL-LGKVIWEYDLPGGYYDFHHDID-ELPNGNLL 204 (477)
T ss_dssp EEEETTS-EEEEE-GGGT--SS-EEE---TTS-EEEEEB-TEEEEE-T-T--EEEEEE--TTEE-B-S-EE-E-TTS-EE
T ss_pred EEECCCccEEEEEccCccccce-eeE--cCCCCEEEecC-CceEEEcC-CCCEEEeeecCCcccccccccE-ECCCCCEE
Confidence 3447889999998875544322 322 23677777777 89999997 79999999998752 11 111 11222333
Q ss_pred EEEc-------------cCCEEEEEeCCCCcEeEEEeccCcccc-CC----------ceeec-------ccccc--cCCc
Q 002016 100 TLSS-------------DGSTLRAWNLPDGQMVWESFLRGSKHS-KP----------LLLVP-------TNLKV--DKDS 146 (981)
Q Consensus 100 ~Vs~-------------~g~~V~A~da~tG~llWe~~~~~~~~s-~~----------~~~v~-------~~~~~--~~~~ 146 (981)
+++. -+..+.-+| .+|+++|++.+..-... .. ..... .++.. ..++
T Consensus 205 ~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd 283 (477)
T PF05935_consen 205 ILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDD 283 (477)
T ss_dssp EEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTT
T ss_pred EEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCC
Confidence 3332 134799999 99999999998642210 00 00000 00000 1255
Q ss_pred EEEEEe--CCEEEEEECCCCcEeEEEeccC
Q 002016 147 LILVSS--KGCLHAVSSIDGEILWTRDFAA 174 (981)
Q Consensus 147 ~V~V~~--~g~l~aLd~~tG~~~W~~~~~~ 174 (981)
.+++.. -..|..+|..+|+++|....+.
T Consensus 284 ~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 284 SIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred eEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 666643 5689999999999999986654
No 56
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=92.85 E-value=26 Score=41.73 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=95.9
Q ss_pred cCCCEEEEEcCCCEEEEEECCCCccceEEEcCCC--cceeeee-eeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCc
Q 002016 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN--DVVDGID-IALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (981)
Q Consensus 51 ~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~--~~i~~l~-~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~ 127 (981)
.++.+...++.+|.++..|-+||+.+=...-+.. +.|..+. -+.+..++++|++ ...+-||.+++++.=++.....
T Consensus 200 PDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaD-kt~KIWdVs~~slv~t~~~~~~ 278 (603)
T KOG0318|consen 200 PDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSAD-KTIKIWDVSTNSLVSTWPMGST 278 (603)
T ss_pred CCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCC-ceEEEEEeeccceEEEeecCCc
Confidence 3577788889999999999999998876442111 2233331 1356678887775 5999999999999988887654
Q ss_pred cccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEE
Q 002016 128 KHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (981)
Q Consensus 128 ~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aL 207 (981)
...+-...+ ..+|..+-|.-+|.+.-|++.++++.=....-...++...+ +.++..+|-.+++| .+..-
T Consensus 279 v~dqqvG~l-----Wqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv--~~d~~~i~SgsyDG----~I~~W 347 (603)
T KOG0318|consen 279 VEDQQVGCL-----WQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTV--SPDGKTIYSGSYDG----HINSW 347 (603)
T ss_pred hhceEEEEE-----EeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEE--cCCCCEEEeeccCc----eEEEE
Confidence 321111111 12343333345999999999999977666554444432223 23455566544444 56666
Q ss_pred ECCCCc
Q 002016 208 NAMNGE 213 (981)
Q Consensus 208 d~~tG~ 213 (981)
|..+|.
T Consensus 348 ~~~~g~ 353 (603)
T KOG0318|consen 348 DSGSGT 353 (603)
T ss_pred ecCCcc
Confidence 666654
No 57
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=2.9 Score=44.17 Aligned_cols=78 Identities=19% Similarity=0.190 Sum_probs=53.7
Q ss_pred cCCCEEEEEcCC---CEEEEEECCCCccceEEEcCCCccee-eeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccC
Q 002016 51 TGRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVD-GIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 51 ~~~~~VyvaT~~---g~L~ALd~~tG~ivWR~~l~~~~~i~-~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
..++.+|..|.. ..|...|..+|++.|.+.+..+..+. |. ...++.+..++-..+...-+|+.|=+.+=+++..+
T Consensus 53 ~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGi-t~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 53 YLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGI-TKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred eeCCEEEEeccccccceeEEEeccCceEEEEeecCCccccccce-eeccceEEEEEeccceeEEEChHHhhhhcccccCC
Confidence 346788888864 68999999999999999998421111 33 12344444556556678888888877777776666
Q ss_pred ccc
Q 002016 127 SKH 129 (981)
Q Consensus 127 ~~~ 129 (981)
+..
T Consensus 132 eGW 134 (262)
T COG3823 132 EGW 134 (262)
T ss_pred cce
Confidence 543
No 58
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=92.67 E-value=20 Score=40.49 Aligned_cols=65 Identities=12% Similarity=0.271 Sum_probs=40.9
Q ss_pred eCCEEEEEECCCCcEeEEEeccCcc----ee------------------eeEE--EEeecCCeEEEEEecCCceeEEEEE
Q 002016 152 SKGCLHAVSSIDGEILWTRDFAAES----VE------------------VQQV--IQLDESDQIYVVGYAGSSQFHAYQI 207 (981)
Q Consensus 152 ~~g~l~aLd~~tG~~~W~~~~~~~~----~~------------------~~~v--v~s~~~~~Vyvvg~~g~~~~~v~aL 207 (981)
.++.++-+|.+||+++|+|+...-- .. +..+ ++-..++.+ +++.-..+ .++.+
T Consensus 94 ~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~y-LiS~R~~~--~i~~I 170 (299)
T PF14269_consen 94 LDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDY-LISSRNTS--TIYKI 170 (299)
T ss_pred ecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccE-EEEecccC--EEEEE
Confidence 3788999999999999999764210 00 0000 011134444 34543322 58999
Q ss_pred ECCCCceeeeee
Q 002016 208 NAMNGELLNHET 219 (981)
Q Consensus 208 d~~tG~~lw~~~ 219 (981)
|.+||+++|+..
T Consensus 171 ~~~tG~I~W~lg 182 (299)
T PF14269_consen 171 DPSTGKIIWRLG 182 (299)
T ss_pred ECCCCcEEEEeC
Confidence 999999999983
No 59
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.61 E-value=23 Score=40.52 Aligned_cols=195 Identities=15% Similarity=0.107 Sum_probs=111.9
Q ss_pred CCCEEEE--EcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEE-EEEeCCCCcEeEEEeccCcc
Q 002016 52 GRKRVVV--STEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTL-RAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 52 ~~~~Vyv--aT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V-~A~da~tG~llWe~~~~~~~ 128 (981)
+++.+|| .|...-|..+|.+.++.+=.. +.++....+ +....+...++++|+.+ ..+| ++|+.. +... +.
T Consensus 105 dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei--~~PGC~~iy-P~~~~~F~~lC~DGsl~~v~Ld-~~Gk~~-~~~t--~~ 177 (342)
T PF06433_consen 105 DGKFLYVQNFTPATSVTVVDLAAKKVVGEI--DTPGCWLIY-PSGNRGFSMLCGDGSLLTVTLD-ADGKEA-QKST--KV 177 (342)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEE--EGTSEEEEE-EEETTEEEEEETTSCEEEEEET-STSSEE-EEEE--EE
T ss_pred CCcEEEEEccCCCCeEEEEECCCCceeeee--cCCCEEEEE-ecCCCceEEEecCCceEEEEEC-CCCCEe-Eeec--cc
Confidence 4555555 467789999999999987443 334333233 33456666778876433 3444 389997 4432 11
Q ss_pred c--cCCceeeccccc-ccCCcEEEEEeCCEEEEEECCCCcEeEEEeccC-------cceee--eEEEE-eecCCeEEEEE
Q 002016 129 H--SKPLLLVPTNLK-VDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA-------ESVEV--QQVIQ-LDESDQIYVVG 195 (981)
Q Consensus 129 ~--s~~~~~v~~~~~-~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~-------~~~~~--~~vv~-s~~~~~Vyvvg 195 (981)
. ..+..+. ...- ...+..+++..+|.|+.+|.....+.|..+... ....| .|++- -...+.+|++-
T Consensus 178 F~~~~dp~f~-~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 178 FDPDDDPLFE-HPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp SSTTTS-B-S---EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEE
T ss_pred cCCCCccccc-ccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEe
Confidence 1 0121111 1110 122335555579999999998888765443321 11222 22221 23678999876
Q ss_pred ecCC------ceeEEEEEECCCCceeeeeeeeccCCccCceEEE--cCcEEEEEECCCCeEEEEEeecCe
Q 002016 196 YAGS------SQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 196 ~~g~------~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~v--g~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
.+|. ..-++-++|++|++++-...+..+.. ++-+. ....+++++..++.|.+.|..+|+
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~---Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID---SIAVSQDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES---EEEEESSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc---eEEEccCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 6542 13689999999999997776544421 12222 223777888777899999999988
No 60
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=92.33 E-value=23 Score=39.90 Aligned_cols=189 Identities=12% Similarity=0.153 Sum_probs=90.6
Q ss_pred EEEEEc-CCCEEEEEECCC-CccceEEEcCCCcceeeeeeeecCeEEEEEc-cCCEEEEEeCC-CCcEeEEEeccCcccc
Q 002016 55 RVVVST-EENVIASLDLRH-GEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLP-DGQMVWESFLRGSKHS 130 (981)
Q Consensus 55 ~VyvaT-~~g~L~ALd~~t-G~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~-~g~~V~A~da~-tG~llWe~~~~~~~~s 130 (981)
++|+++ .++.|..+|..+ |++.=.+.++..+....+...-++..+++++ ..+.+..|+.. +|++.=......+.
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~-- 80 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG-- 80 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC--
Confidence 478884 467889988864 6533223343222222232223455666653 35678888875 56542111111110
Q ss_pred CCceeecccccccCCcEEEEE--eCCEEEEEECC-CCcE---eEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEE
Q 002016 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSI-DGEI---LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (981)
Q Consensus 131 ~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~-tG~~---~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v 204 (981)
.+..+... ..++.+++. .++.+..++.. +|.. ....... ..+..+....++..+|+.+...+ .+
T Consensus 81 ~p~~i~~~----~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~---~~~~~~~~~p~g~~l~v~~~~~~---~v 150 (330)
T PRK11028 81 SPTHISTD----HQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL---EGCHSANIDPDNRTLWVPCLKED---RI 150 (330)
T ss_pred CceEEEEC----CCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCC---CcccEeEeCCCCCEEEEeeCCCC---EE
Confidence 11111100 124466764 37888888875 4432 2211111 11223322335567777665433 46
Q ss_pred EEEECCC-Cceeee--eeeeccCCccC-ceEEE-cCcEEEEEECCCCeEEEEEeec
Q 002016 205 YQINAMN-GELLNH--ETAAFSGGFVG-DVALV-SSDTLVTLDTTRSILVTVSFKN 255 (981)
Q Consensus 205 ~aLd~~t-G~~lw~--~~v~~p~~~~~-~~~~v-g~~~lv~~d~~~g~L~v~~L~s 255 (981)
..+|..+ |...-. ..+..+.+-.. .+.+- ++..+++.+...+.+.+.++..
T Consensus 151 ~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 151 RLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 6666655 443211 11122211111 12222 3446667776678899999873
No 61
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.17 E-value=5.7 Score=48.74 Aligned_cols=111 Identities=15% Similarity=0.191 Sum_probs=71.0
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee-CCEEEEEECCCCcEeEEEec
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KGCLHAVSSIDGEILWTRDF 172 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~-~g~l~aLd~~tG~~~W~~~~ 172 (981)
++..++.|+++++|..||..+|-=.=.+.-+...+ ....+. ..+.+++ .+ ||+|.|.|.+.++--=++..
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~V-t~v~f~-------~~g~~llssSLDGtVRAwDlkRYrNfRTft~ 432 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGV-TAVQFT-------ARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS 432 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEeccCCCce-EEEEEE-------ecCCEEEEeecCCeEEeeeecccceeeeecC
Confidence 33455547778899999999998776665554332 122222 2333555 44 99999999999988888877
Q ss_pred cCcceeeeEEEEee-cCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 173 AAESVEVQQVIQLD-ESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 173 ~~~~~~~~~vv~s~-~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
|.+.. ..++-+. +++.|++ |... ++.+...+.+||+.+.-.
T Consensus 433 P~p~Q--fscvavD~sGelV~A-G~~d--~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 433 PEPIQ--FSCVAVDPSGELVCA-GAQD--SFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred CCcee--eeEEEEcCCCCEEEe-eccc--eEEEEEEEeecCeeeehh
Confidence 76542 2333122 3455554 4433 467888899999988544
No 62
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=92.04 E-value=21 Score=40.33 Aligned_cols=161 Identities=9% Similarity=0.067 Sum_probs=77.8
Q ss_pred ccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCC------CEEEEEECCCCcc--ceEEEcCCCccee-eeeeeec
Q 002016 25 EDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEE------NVIASLDLRHGEI--FWRHVLGINDVVD-GIDIALG 95 (981)
Q Consensus 25 edqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~------g~L~ALd~~tG~i--vWR~~l~~~~~i~-~l~~~~~ 95 (981)
+++..+..|+..- ..|.....+....-++.||+.... +.+..+|+.+.+- .|+..-+-+.... ......+
T Consensus 45 ~~~~~~~~W~~~~-~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~ 123 (323)
T TIGR03548 45 KDENSNLKWVKDG-QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD 123 (323)
T ss_pred ecCCCceeEEEcc-cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC
Confidence 3444455687522 222211112222236778877653 4788889887752 4554322221111 1112345
Q ss_pred CeEEEEEcc-----CCEEEEEeCCCCcEeEEEeccCc--cccCCceeecccccccCCcEEEEEe--CC----EEEEEECC
Q 002016 96 KYVITLSSD-----GSTLRAWNLPDGQMVWESFLRGS--KHSKPLLLVPTNLKVDKDSLILVSS--KG----CLHAVSSI 162 (981)
Q Consensus 96 ~~vV~Vs~~-----g~~V~A~da~tG~llWe~~~~~~--~~s~~~~~v~~~~~~~~~~~V~V~~--~g----~l~aLd~~ 162 (981)
+.++++||. -..+..+|+.+. .|+.-..-+ ...... . ...++.++|++ ++ .+.++|.+
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~-~------~~~~~~iYv~GG~~~~~~~~~~~yd~~ 194 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPV-C------VKLQNELYVFGGGSNIAYTDGYKYSPK 194 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcce-E------EEECCEEEEEcCCCCccccceEEEecC
Confidence 566666663 146889998765 487643211 110111 1 11245677763 21 35688888
Q ss_pred CCcEeEEEeccCcce-eeeE----EEEeecCCeEEEEEec
Q 002016 163 DGEILWTRDFAAESV-EVQQ----VIQLDESDQIYVVGYA 197 (981)
Q Consensus 163 tG~~~W~~~~~~~~~-~~~~----vv~s~~~~~Vyvvg~~ 197 (981)
+. .|+.-.+.... .+.. ......++.+|++|-.
T Consensus 195 ~~--~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~ 232 (323)
T TIGR03548 195 KN--QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGF 232 (323)
T ss_pred CC--eeEECCCCCCCCCceeccceeEEEECCCEEEEECCc
Confidence 75 58764432110 1111 1112356889987643
No 63
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=92.01 E-value=19 Score=42.18 Aligned_cols=199 Identities=15% Similarity=0.152 Sum_probs=107.4
Q ss_pred CceeeeeeeecccCCCEEEEEcCCC--EEEEEECCCCccceEEEcCCCcceeeee-eeecCeEEEEEccCCEEEEEeCCC
Q 002016 39 GKVKHAVFHTQKTGRKRVVVSTEEN--VIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDGSTLRAWNLPD 115 (981)
Q Consensus 39 G~~~~~~f~~~~~~~~~VyvaT~~g--~L~ALd~~tG~ivWR~~l~~~~~i~~l~-~~~~~~vV~Vs~~g~~V~A~da~t 115 (981)
|...+..||.- ...+.|+.-+| .|+.+|-++-..+=...|+.- .|.... .+.|...++.++....++.||..+
T Consensus 214 ~~I~sv~FHp~---~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~f-Pi~~a~f~p~G~~~i~~s~rrky~ysyDle~ 289 (514)
T KOG2055|consen 214 GGITSVQFHPT---APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKF-PIQKAEFAPNGHSVIFTSGRRKYLYSYDLET 289 (514)
T ss_pred CCceEEEecCC---CceEEEecCCCcEEEEEecCccChhheeeeeccC-ccceeeecCCCceEEEecccceEEEEeeccc
Confidence 44445577732 44688888777 467887766665554445432 232221 234554777677777899999999
Q ss_pred CcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEE
Q 002016 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (981)
Q Consensus 116 G~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv 194 (981)
+++.=-.+..+-. .+..... .....+..+++. ..|.++-|.++||+.+=+.+...... .+.-+..+..+++.
T Consensus 290 ak~~k~~~~~g~e-~~~~e~F---eVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~---~~~fsSdsk~l~~~ 362 (514)
T KOG2055|consen 290 AKVTKLKPPYGVE-EKSMERF---EVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS---DFTFSSDSKELLAS 362 (514)
T ss_pred cccccccCCCCcc-cchhhee---EecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe---eEEEecCCcEEEEE
Confidence 8875222221111 0112111 111113333333 58999999999999887776653221 11112345666666
Q ss_pred EecCCceeEEEEEECCCCceeeeeeeeccCCccCc--eEEEcCcEEEEEECCCCeEEEEEeec
Q 002016 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGD--VALVSSDTLVTLDTTRSILVTVSFKN 255 (981)
Q Consensus 195 g~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~--~~~vg~~~lv~~d~~~g~L~v~~L~s 255 (981)
|..| .|+.+|+..-..+..+ .-...+.+. |.-..+.+++|.. +.|-+.+.+.++
T Consensus 363 ~~~G----eV~v~nl~~~~~~~rf--~D~G~v~gts~~~S~ng~ylA~GS-~~GiVNIYd~~s 418 (514)
T KOG2055|consen 363 GGTG----EVYVWNLRQNSCLHRF--VDDGSVHGTSLCISLNGSYLATGS-DSGIVNIYDGNS 418 (514)
T ss_pred cCCc----eEEEEecCCcceEEEE--eecCccceeeeeecCCCceEEecc-CcceEEEeccch
Confidence 5555 5888888766554333 112333332 2222233555543 456655555444
No 64
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.86 E-value=6.6 Score=43.19 Aligned_cols=192 Identities=13% Similarity=0.101 Sum_probs=104.4
Q ss_pred CC-EEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeee-eecCeEEEEEccCCEEEEEeCCCCcE-eEEEeccCccc
Q 002016 53 RK-RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQM-VWESFLRGSKH 129 (981)
Q Consensus 53 ~~-~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~-~~~~~vV~Vs~~g~~V~A~da~tG~l-lWe~~~~~~~~ 129 (981)
++ .=|.+...+.+..||++||++. ++.|..+..-.+... ..+..+++ ..+.-+.-+|.+++.. .|.....-+..
T Consensus 72 dG~VWft~qg~gaiGhLdP~tGev~-~ypLg~Ga~Phgiv~gpdg~~Wit--d~~~aI~R~dpkt~evt~f~lp~~~a~~ 148 (353)
T COG4257 72 DGAVWFTAQGTGAIGHLDPATGEVE-TYPLGSGASPHGIVVGPDGSAWIT--DTGLAIGRLDPKTLEVTRFPLPLEHADA 148 (353)
T ss_pred CCceEEecCccccceecCCCCCceE-EEecCCCCCCceEEECCCCCeeEe--cCcceeEEecCcccceEEeecccccCCC
Confidence 44 4667778899999999999864 556655422112200 12333444 2233577888877654 45544322111
Q ss_pred cCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcE-eEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEE
Q 002016 130 SKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI-LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQI 207 (981)
Q Consensus 130 s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~-~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aL 207 (981)
.-...+. +..+.+... ..|--=+||..++.+ .|......+ +..+. +..++.||+.+++|++ +.-+
T Consensus 149 nlet~vf------D~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~g---pyGi~-atpdGsvwyaslagna---iari 215 (353)
T COG4257 149 NLETAVF------DPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGG---PYGIC-ATPDGSVWYASLAGNA---IARI 215 (353)
T ss_pred cccceee------CCCccEEEeeccccceecCcccCceeeeccCCCCC---CcceE-ECCCCcEEEEeccccc---eEEc
Confidence 0001111 334445443 455555899988864 465543322 33443 4678999999999874 8889
Q ss_pred ECCCCceeeeeeeeccCCccC-c-eEEE-cCcEEEEEECCCCeEEEEEeecCeeeEEEEee
Q 002016 208 NAMNGELLNHETAAFSGGFVG-D-VALV-SSDTLVTLDTTRSILVTVSFKNRKIAFQETHL 265 (981)
Q Consensus 208 d~~tG~~lw~~~v~~p~~~~~-~-~~~v-g~~~lv~~d~~~g~L~v~~L~sg~~~~~~~~l 265 (981)
|+.+|.. ..+..|..+.. . .+-+ ..+-+-..+..+++++..+-.+.+ ..+-+|
T Consensus 216 dp~~~~a---ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypL 271 (353)
T COG4257 216 DPFAGHA---EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPL 271 (353)
T ss_pred ccccCCc---ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeC
Confidence 9999932 22344544222 1 1111 112333344455677777665544 555665
No 65
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.49 E-value=6.6 Score=44.87 Aligned_cols=154 Identities=10% Similarity=0.161 Sum_probs=95.3
Q ss_pred ccCCCEEEEEcCCCEEEEEECCCC-----ccceEEEcCCCcceeeeee-eecCeEEEEEccC--CEEEEEeCCCCcEeEE
Q 002016 50 KTGRKRVVVSTEENVIASLDLRHG-----EIFWRHVLGINDVVDGIDI-ALGKYVITLSSDG--STLRAWNLPDGQMVWE 121 (981)
Q Consensus 50 ~~~~~~VyvaT~~g~L~ALd~~tG-----~ivWR~~l~~~~~i~~l~~-~~~~~vV~Vs~~g--~~V~A~da~tG~llWe 121 (981)
...++.|.++.++|.+...+.++| .++|-+..+.- ..++- .....+|..||.- ..+--||.+.++.+|+
T Consensus 112 ~~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~---~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~ 188 (412)
T KOG3881|consen 112 KLADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGL---YDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS 188 (412)
T ss_pred hhcCCEEEEEecCCcEEEEeccCCccccccceeeecCCce---eeeccCCCCCceEecCchhcccceeeeecccceeeee
Confidence 446788999999999988888844 45565443221 11111 1233456546544 5789999999999999
Q ss_pred EeccCc-cc-------cCCceeecccccccCCcEEEEE--eCCEEEEEECCCCc-EeEEEeccCcceeeeEEEEeecCCe
Q 002016 122 SFLRGS-KH-------SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQ 190 (981)
Q Consensus 122 ~~~~~~-~~-------s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~-~~W~~~~~~~~~~~~~vv~s~~~~~ 190 (981)
..--.. .+ -.++.+++ ..+...++. .-+.|.-+|...|+ ++=+++..+..++-... ...++.
T Consensus 189 aKNvpnD~L~LrVPvW~tdi~Fl~-----g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l--~p~gn~ 261 (412)
T KOG3881|consen 189 AKNVPNDRLGLRVPVWITDIRFLE-----GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGL--TPSGNF 261 (412)
T ss_pred ccCCCCccccceeeeeeccceecC-----CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeee--cCCCcE
Confidence 864321 11 12233331 112455664 37899999999886 56666655443322222 246677
Q ss_pred EEEEEecCCceeEEEEEECCCCceeee
Q 002016 191 IYVVGYAGSSQFHAYQINAMNGELLNH 217 (981)
Q Consensus 191 Vyvvg~~g~~~~~v~aLd~~tG~~lw~ 217 (981)
||+....| .+..+|..+|+.+-.
T Consensus 262 Iy~gn~~g----~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 262 IYTGNTKG----QLAKFDLRGGKLLGC 284 (412)
T ss_pred EEEecccc----hhheecccCceeecc
Confidence 77754444 599999999988754
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.49 E-value=29 Score=44.49 Aligned_cols=106 Identities=11% Similarity=0.130 Sum_probs=66.4
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~-~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
+..+++++.+|.|...|..+|+.+....-.. +.+..+... .++..++.++.++.|+.||..+|..+-.........
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~-- 621 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-- 621 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeE--
Confidence 4568889999999999999998887764322 223333222 234455556667899999999998765554332211
Q ss_pred CceeecccccccCCcEEEEE-eCCEEEEEECCCCcE
Q 002016 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI 166 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~ 166 (981)
...+.+ ..+..+++. .+|.++.+|..+++.
T Consensus 622 ~v~~~~-----~~g~~latgs~dg~I~iwD~~~~~~ 652 (793)
T PLN00181 622 CVQFPS-----ESGRSLAFGSADHKVYYYDLRNPKL 652 (793)
T ss_pred EEEEeC-----CCCCEEEEEeCCCeEEEEECCCCCc
Confidence 111110 113333443 589999999988763
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=91.34 E-value=53 Score=42.09 Aligned_cols=190 Identities=18% Similarity=0.102 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEE------EcCCCcceeeeee-eecCeEEEEEccCCEEEEEeCCCCcEeEEEec
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRH------VLGINDVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~------~l~~~~~i~~l~~-~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~ 124 (981)
+++.+.+++.++.|.-.|..+...-++. .+.....+..+.- ...+..++.++.++.|+.||..+|+.+.+...
T Consensus 494 dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~ 573 (793)
T PLN00181 494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKE 573 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecC
Confidence 4566888899999988886542111110 0111111111210 11234555566678999999999999988765
Q ss_pred cCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeE
Q 002016 125 RGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFH 203 (981)
Q Consensus 125 ~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~ 203 (981)
....+ ....+-+ ..+..++.. .||.+...|..+|...-+...... ...+.....++..++.|...+ .
T Consensus 574 H~~~V-~~l~~~p-----~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~---v~~v~~~~~~g~~latgs~dg---~ 641 (793)
T PLN00181 574 HEKRV-WSIDYSS-----ADPTLLASGSDDGSVKLWSINQGVSIGTIKTKAN---ICCVQFPSESGRSLAFGSADH---K 641 (793)
T ss_pred CCCCE-EEEEEcC-----CCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCC---eEEEEEeCCCCCEEEEEeCCC---e
Confidence 54332 1111111 112333334 489999999999887655443211 111111123344555444332 5
Q ss_pred EEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeec
Q 002016 204 AYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (981)
Q Consensus 204 v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~s 255 (981)
+..+|..+++.......+-...+. .+.+..+..+++.. .++.+.+-++..
T Consensus 642 I~iwD~~~~~~~~~~~~~h~~~V~-~v~f~~~~~lvs~s-~D~~ikiWd~~~ 691 (793)
T PLN00181 642 VYYYDLRNPKLPLCTMIGHSKTVS-YVRFVDSSTLVSSS-TDNTLKLWDLSM 691 (793)
T ss_pred EEEEECCCCCccceEecCCCCCEE-EEEEeCCCEEEEEE-CCCEEEEEeCCC
Confidence 888888877532211111111111 12222344555544 356777777654
No 68
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=91.24 E-value=30 Score=39.05 Aligned_cols=145 Identities=10% Similarity=0.077 Sum_probs=75.2
Q ss_pred EEEEEECCCCccceEEEcCCCcce-eeeeeeecCeEEEEEccC-----CEEEEEeCCCCcE--eEEEeccCccccCCcee
Q 002016 64 VIASLDLRHGEIFWRHVLGINDVV-DGIDIALGKYVITLSSDG-----STLRAWNLPDGQM--VWESFLRGSKHSKPLLL 135 (981)
Q Consensus 64 ~L~ALd~~tG~ivWR~~l~~~~~i-~~l~~~~~~~vV~Vs~~g-----~~V~A~da~tG~l--lWe~~~~~~~~s~~~~~ 135 (981)
.++.++..+.+..|+..-+-+..- .+..++.++.++++||.. ..+..+|..+.+- .|+....-+. +.
T Consensus 40 ~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~---~~-- 114 (323)
T TIGR03548 40 GIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPF---TF-- 114 (323)
T ss_pred eeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCc---Cc--
Confidence 466675334556798754333211 122134677777777642 3688888877653 4543211110 00
Q ss_pred ecccccccCCcEEEEEeC-------CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCC-ceeEEEEE
Q 002016 136 VPTNLKVDKDSLILVSSK-------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS-SQFHAYQI 207 (981)
Q Consensus 136 v~~~~~~~~~~~V~V~~~-------g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~-~~~~v~aL 207 (981)
. ....+..++.++|..+ ..+.++|..+. .|+.-.+.+........-...++.+|++|-..+ ....+.++
T Consensus 115 ~-~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 115 E-NGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQ--EWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred c-CceEEEECCEEEEEeCcCCCccCceEEEEcCCCC--CeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEE
Confidence 0 0011122566777632 36888998865 598644322110011111246789999875432 11346788
Q ss_pred ECCCCceeeee
Q 002016 208 NAMNGELLNHE 218 (981)
Q Consensus 208 d~~tG~~lw~~ 218 (981)
|+.+.+ |+.
T Consensus 192 d~~~~~--W~~ 200 (323)
T TIGR03548 192 SPKKNQ--WQK 200 (323)
T ss_pred ecCCCe--eEE
Confidence 988764 765
No 69
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=91.23 E-value=32 Score=39.29 Aligned_cols=151 Identities=13% Similarity=0.164 Sum_probs=82.2
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCeEEEEEcc-CCEEEEEeCCCCcEeEEEeccCcccc
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSD-GSTLRAWNLPDGQMVWESFLRGSKHS 130 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~~l~~~~~~~vV~Vs~~-g~~V~A~da~tG~llWe~~~~~~~~s 130 (981)
..-+.+++++..-+-.+..+|+ |-..+... +++.... -..++.+..+|+ .|.|+.|...+|...|...-..+
T Consensus 76 ~~l~aTGGgDD~AflW~~~~ge--~~~eltgHKDSVt~~~-FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~--- 149 (399)
T KOG0296|consen 76 NNLVATGGGDDLAFLWDISTGE--FAGELTGHKDSVTCCS-FSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE--- 149 (399)
T ss_pred CceEEecCCCceEEEEEccCCc--ceeEecCCCCceEEEE-EccCceEEEecCCCccEEEEEcccCceEEEeecccC---
Confidence 4456677778877888888888 66666443 4444432 233444544554 68999999999999999862221
Q ss_pred CCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEEC
Q 002016 131 KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (981)
Q Consensus 131 ~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~ 209 (981)
++..+-.+. ....+++. .||.+......++...=.+......-+-..++ ..+.++ +.++..+ .+.+.|+
T Consensus 150 -dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~--pdGKr~-~tgy~dg---ti~~Wn~ 219 (399)
T KOG0296|consen 150 -DIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI--PDGKRI-LTGYDDG---TIIVWNP 219 (399)
T ss_pred -ceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCccccccc--CCCceE-EEEecCc---eEEEEec
Confidence 223332211 12223333 35655555554432222222111111111111 233344 4455543 5999999
Q ss_pred CCCceeeeee
Q 002016 210 MNGELLNHET 219 (981)
Q Consensus 210 ~tG~~lw~~~ 219 (981)
+||+++-..+
T Consensus 220 ktg~p~~~~~ 229 (399)
T KOG0296|consen 220 KTGQPLHKIT 229 (399)
T ss_pred CCCceeEEec
Confidence 9999986654
No 70
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=91.19 E-value=47 Score=41.24 Aligned_cols=97 Identities=11% Similarity=0.010 Sum_probs=56.5
Q ss_pred CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEE
Q 002016 153 KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL 232 (981)
Q Consensus 153 ~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~ 232 (981)
||.|...|..+|-=.=++.......+..+. ...+..++-.+++| .|.|.|+..++--..+ .+|...+-.|+.
T Consensus 371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f--~~~g~~llssSLDG----tVRAwDlkRYrNfRTf--t~P~p~Qfscva 442 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQF--TARGNVLLSSSLDG----TVRAWDLKRYRNFRTF--TSPEPIQFSCVA 442 (893)
T ss_pred CCcEEEEeccCceEEEEeccCCCceEEEEE--EecCCEEEEeecCC----eEEeeeecccceeeee--cCCCceeeeEEE
Confidence 455555555444444344333333322233 34566666667777 5999999988776665 455555556777
Q ss_pred Ec-CcEEEEEE-CCCCeEEEEEeecCe
Q 002016 233 VS-SDTLVTLD-TTRSILVTVSFKNRK 257 (981)
Q Consensus 233 vg-~~~lv~~d-~~~g~L~v~~L~sg~ 257 (981)
|. .+.+||+- .+.=.+++-++++|+
T Consensus 443 vD~sGelV~AG~~d~F~IfvWS~qTGq 469 (893)
T KOG0291|consen 443 VDPSGELVCAGAQDSFEIFVWSVQTGQ 469 (893)
T ss_pred EcCCCCEEEeeccceEEEEEEEeecCe
Confidence 74 34555553 222256777888887
No 71
>PHA02713 hypothetical protein; Provisional
Probab=91.00 E-value=5 Score=49.26 Aligned_cols=149 Identities=12% Similarity=0.186 Sum_probs=83.2
Q ss_pred CCCEEEEEcCC------CEEEEEECCCCccceEEEcCCCccee--eeeeeecCeEEEEEccC------------------
Q 002016 52 GRKRVVVSTEE------NVIASLDLRHGEIFWRHVLGINDVVD--GIDIALGKYVITLSSDG------------------ 105 (981)
Q Consensus 52 ~~~~VyvaT~~------g~L~ALd~~tG~ivWR~~l~~~~~i~--~l~~~~~~~vV~Vs~~g------------------ 105 (981)
-+++||+..+. +.+..+|+++. .|+..-+-+.... +. ++.++.++++||..
T Consensus 350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~--~W~~~~~mp~~r~~~~~-~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 350 IDDTIYAIGGQNGTNVERTIECYTMGDD--KWKMLPDMPIALSSYGM-CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ECCEEEEECCcCCCCCCceEEEEECCCC--eEEECCCCCcccccccE-EEECCEEEEEeCCCcccccccccccccccccc
Confidence 37789887653 35888999987 4987443221111 22 34566677767642
Q ss_pred -----CEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeC--------CEEEEEECCC-CcEeEEEe
Q 002016 106 -----STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSID-GEILWTRD 171 (981)
Q Consensus 106 -----~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~--------g~l~aLd~~t-G~~~W~~~ 171 (981)
..+..+|+.+. .|+.-.+-... . .. .+.+.-++.++|.++ ..+.++|+.+ . .|+.-
T Consensus 427 ~~~~~~~ve~YDP~td--~W~~v~~m~~~---r--~~-~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~ 496 (557)
T PHA02713 427 DTHSSNKVIRYDTVNN--IWETLPNFWTG---T--IR-PGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELI 496 (557)
T ss_pred cccccceEEEECCCCC--eEeecCCCCcc---c--cc-CcEEEECCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEc
Confidence 35888998876 48754321110 0 00 011123566777642 2467899887 4 49864
Q ss_pred ccCcce-eeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 172 FAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 172 ~~~~~~-~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
.+-+.- ....+ +.-++.+|++|...+. ..+-++|+.|++ |+.
T Consensus 497 ~~m~~~r~~~~~--~~~~~~iyv~Gg~~~~-~~~e~yd~~~~~--W~~ 539 (557)
T PHA02713 497 TTTESRLSALHT--ILHDNTIMMLHCYESY-MLQDTFNVYTYE--WNH 539 (557)
T ss_pred cccCccccccee--EEECCEEEEEeeecce-eehhhcCccccc--ccc
Confidence 443221 01112 3468899998754332 136677876653 554
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=90.34 E-value=24 Score=43.12 Aligned_cols=180 Identities=15% Similarity=0.179 Sum_probs=111.8
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~ 132 (981)
++.++.++.++.|...|..+|..+=..-.+..+.+-++....+++.++-++.+.+++-||..+|.-.=.........
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv--- 294 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSV--- 294 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceE---
Confidence 77899999999999999999987655333333333344223345666645557899999999999887766554432
Q ss_pred ceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECC
Q 002016 133 LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (981)
Q Consensus 133 ~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~ 210 (981)
..+ ...+.+.+. .|..|.+.+..+|..+=....... +...+ ....+.++.++++| .+...|+.
T Consensus 295 -~~~------~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~---~V~~v-~~~~~~lvsgs~d~----~v~VW~~~ 359 (537)
T KOG0274|consen 295 -RCL------TIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG---PVNCV-QLDEPLLVSGSYDG----TVKVWDPR 359 (537)
T ss_pred -EEE------EccCceEeeccCCceEEEEeccCcceEEEeccccc---cEEEE-EecCCEEEEEecCc----eEEEEEhh
Confidence 111 123445554 478888888888877666553211 11222 13466666666555 47788888
Q ss_pred CCceeeeeeeeccCCccC--ceEEEcC-cEEEEEECCCCeEEEEEeecC
Q 002016 211 NGELLNHETAAFSGGFVG--DVALVSS-DTLVTLDTTRSILVTVSFKNR 256 (981)
Q Consensus 211 tG~~lw~~~v~~p~~~~~--~~~~vg~-~~lv~~d~~~g~L~v~~L~sg 256 (981)
+|+.+...+- -++ .++++++ +.++-... ++.+.+=|+.++
T Consensus 360 ~~~cl~sl~g-----H~~~V~sl~~~~~~~~~Sgs~-D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 360 TGKCLKSLSG-----HTGRVYSLIVDSENRLLSGSL-DTTIKVWDLRTK 402 (537)
T ss_pred hceeeeeecC-----CcceEEEEEecCcceEEeeee-ccceEeecCCch
Confidence 9988876632 222 2344555 54444332 356777777766
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=90.15 E-value=10 Score=44.47 Aligned_cols=151 Identities=16% Similarity=0.191 Sum_probs=82.1
Q ss_pred CCCE-EEEEcCCCEEEEEECCCCccceEEEcCCC-cceeeeeee-ecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcc
Q 002016 52 GRKR-VVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 52 ~~~~-VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~~l~~~-~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~ 128 (981)
.++. +..++++.++---|+.++.+ ...+... +.+...... .++.+|+-|++++.||.||..+=. -|...+.-+.
T Consensus 121 ~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~ 197 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHGC 197 (487)
T ss_pred cCCeEEEecCCCceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCCC
Confidence 3455 45566677777777766663 4455433 333322222 333455546779999999987664 6666665321
Q ss_pred ccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEec-cCcceeeeEEEEeecCCeEEEEEecCCceeEEEE
Q 002016 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF-AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (981)
Q Consensus 129 ~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~-~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~a 206 (981)
--.....+| .+..++. ++..+...|..+|.++=.... -.... .-+.....+..++-+|+++ +|-+
T Consensus 198 pVe~vl~lp-------sgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtV--TcL~l~s~~~rLlS~sLD~----~VKV 264 (487)
T KOG0310|consen 198 PVESVLALP-------SGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTV--TCLRLASDSTRLLSGSLDR----HVKV 264 (487)
T ss_pred ceeeEEEcC-------CCCEEEEcCCCeEEEEEecCCceehhhhhcccceE--EEEEeecCCceEeeccccc----ceEE
Confidence 102233332 2234454 456677777776665433222 11111 1122233557777777777 4788
Q ss_pred EECCCCceeeee
Q 002016 207 INAMNGELLNHE 218 (981)
Q Consensus 207 Ld~~tG~~lw~~ 218 (981)
+|..+=+++...
T Consensus 265 fd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 265 FDTTNYKVVHSW 276 (487)
T ss_pred EEccceEEEEee
Confidence 887676666444
No 74
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.88 E-value=38 Score=38.06 Aligned_cols=196 Identities=14% Similarity=0.165 Sum_probs=91.3
Q ss_pred CCCEEEEEcC-CCEEEEEECC-CCccceEEEcCCCcceeeeeeeecCeEEEEEc-cCCEEEEEeCC-CCcEe-EEEeccC
Q 002016 52 GRKRVVVSTE-ENVIASLDLR-HGEIFWRHVLGINDVVDGIDIALGKYVITLSS-DGSTLRAWNLP-DGQMV-WESFLRG 126 (981)
Q Consensus 52 ~~~~VyvaT~-~g~L~ALd~~-tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~-~g~~V~A~da~-tG~ll-We~~~~~ 126 (981)
+++.+|+++. ++.|..++.. +|++.=.......+....+....++..++++. .++.+..||.+ +|.+. -......
T Consensus 45 d~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~ 124 (330)
T PRK11028 45 DKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG 124 (330)
T ss_pred CCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC
Confidence 4667898865 5667666654 56531111111111112221123445666654 36789999886 45321 1111111
Q ss_pred ccccCCceeecccccccCCcEEEEE--eCCEEEEEECCC-CcEe----EEEeccCcceeeeEEEEeecCCeEEEEEecCC
Q 002016 127 SKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSID-GEIL----WTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (981)
Q Consensus 127 ~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~t-G~~~----W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~ 199 (981)
.. .+..+. . ...++.+++. .++.|..+|..+ |... .....+.+. .|..+....++..+|++.. ++
T Consensus 125 ~~--~~~~~~-~---~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~-~p~~~~~~pdg~~lyv~~~-~~ 196 (330)
T PRK11028 125 LE--GCHSAN-I---DPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGA-GPRHMVFHPNQQYAYCVNE-LN 196 (330)
T ss_pred CC--cccEeE-e---CCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCC-CCceEEECCCCCEEEEEec-CC
Confidence 10 011111 0 0124567664 478888888866 4321 222222221 2444543445567777543 33
Q ss_pred ceeEEEEEECCCCceeeeeeee-ccCCccC-----ceEEE-cCcEEEEEECCCCeEEEEEeec
Q 002016 200 SQFHAYQINAMNGELLNHETAA-FSGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFKN 255 (981)
Q Consensus 200 ~~~~v~aLd~~tG~~lw~~~v~-~p~~~~~-----~~~~v-g~~~lv~~d~~~g~L~v~~L~s 255 (981)
..+.++.++..+|+.....++. .|....+ .+.+- .+..+++.+...+.+.+.++.+
T Consensus 197 ~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 197 SSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred CEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 3445555555467654333332 2322211 12221 3345555665567788877754
No 75
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.72 E-value=36 Score=40.68 Aligned_cols=155 Identities=17% Similarity=0.200 Sum_probs=83.3
Q ss_pred CCCEEEEEcCCCEEEEEECCC-CccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcccc
Q 002016 52 GRKRVVVSTEENVIASLDLRH-GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~t-G~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s 130 (981)
++..+..++.++.+...|.++ |..+=. .-.....+..+.....+..++-+++++.||.||..+|+.+=.........
T Consensus 214 d~~~l~s~s~D~tiriwd~~~~~~~~~~-l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~i- 291 (456)
T KOG0266|consen 214 DGSYLLSGSDDKTLRIWDLKDDGRNLKT-LKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGI- 291 (456)
T ss_pred CCcEEEEecCCceEEEeeccCCCeEEEE-ecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCce-
Confidence 455788888999999999844 343322 21222223222112222445446667899999999999987777765443
Q ss_pred CCceeecccccccCCcEEEE-E-eCCEEEEEECCCCcEe--EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEE
Q 002016 131 KPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEIL--WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (981)
Q Consensus 131 ~~~~~v~~~~~~~~~~~V~V-~-~~g~l~aLd~~tG~~~--W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~a 206 (981)
....+ ..++..++ . .||.+...|..+|..+ =+............+. ...+..|++....+. .+.-
T Consensus 292 s~~~f-------~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--fsp~~~~ll~~~~d~--~~~~ 360 (456)
T KOG0266|consen 292 SGLAF-------SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQ--FSPNGKYLLSASLDR--TLKL 360 (456)
T ss_pred EEEEE-------CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEE--ECCCCcEEEEecCCC--eEEE
Confidence 11111 12333444 4 4999999999999943 1111111110011222 223333333322221 3566
Q ss_pred EECCCCceeeeee
Q 002016 207 INAMNGELLNHET 219 (981)
Q Consensus 207 Ld~~tG~~lw~~~ 219 (981)
.|..+|...-++.
T Consensus 361 w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 361 WDLRSGKSVGTYT 373 (456)
T ss_pred EEccCCcceeeec
Confidence 6777887776653
No 76
>PTZ00420 coronin; Provisional
Probab=89.69 E-value=20 Score=44.16 Aligned_cols=69 Identities=4% Similarity=0.078 Sum_probs=48.4
Q ss_pred EEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccC
Q 002016 56 VVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 56 VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
+..++.+|.|.-.|.++|+.+++..... .+..+.....+.+++.++.++.++.||+.+|+.+-+.....
T Consensus 141 LaSgS~DgtIrIWDl~tg~~~~~i~~~~--~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~ 209 (568)
T PTZ00420 141 MCSSGFDSFVNIWDIENEKRAFQINMPK--KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD 209 (568)
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEecCC--cEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence 3467889999999999999888765432 24333222344555556667899999999999986665543
No 77
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=89.66 E-value=3.4 Score=45.85 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=89.3
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEecc
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
++..+.-++.+..+|.-..++|+.+=|++..+..+ ..+.+. +.+..++-. +||.+...+.++++-+=+++..
T Consensus 317 D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyv-n~a~ft------~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~ 389 (508)
T KOG0275|consen 317 DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYV-NEATFT------DDGHHIISASSDGTVKVWHGKTTECLSTFKPL 389 (508)
T ss_pred CcchhhcccccceEEEeccccchhHHHhcCccccc-cceEEc------CCCCeEEEecCCccEEEecCcchhhhhhccCC
Confidence 33333325557789998999999999999887654 333333 223344444 6999999999999988888776
Q ss_pred CcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccC--CccCceEEEcCcEEEEEECCCCeEEEE
Q 002016 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSG--GFVGDVALVSSDTLVTLDTTRSILVTV 251 (981)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~--~~~~~~~~vg~~~lv~~d~~~g~L~v~ 251 (981)
......-.++....+-.-++++.... .++.++. .|+++...+-+-.. ++-..++-.-+..++|+- .++.|+..
T Consensus 390 ~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcig-ED~vlYCF 464 (508)
T KOG0275|consen 390 GTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIG-EDGVLYCF 464 (508)
T ss_pred CCcccceeEEEcCCCCceEEEEcCCC---eEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEc-cCcEEEEE
Confidence 54443333332222222333443322 3555554 46666655322111 111112222345777875 46889999
Q ss_pred EeecCee
Q 002016 252 SFKNRKI 258 (981)
Q Consensus 252 ~L~sg~~ 258 (981)
...+|..
T Consensus 465 ~~~sG~L 471 (508)
T KOG0275|consen 465 SVLSGKL 471 (508)
T ss_pred EeecCce
Confidence 8888874
No 78
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=89.37 E-value=38 Score=39.26 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=42.2
Q ss_pred CCEEEEEcC--CCEEEEEECCCCccceEEEcCCCc--ceeeeeeeecCeEEEEEccC-----------CEEEEEeCCCCc
Q 002016 53 RKRVVVSTE--ENVIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDG-----------STLRAWNLPDGQ 117 (981)
Q Consensus 53 ~~~VyvaT~--~g~L~ALd~~tG~ivWR~~l~~~~--~i~~l~~~~~~~vV~Vs~~g-----------~~V~A~da~tG~ 117 (981)
++.||++.. .+.+..+|.++.+-.|+...+.+. ......+..++.++++||.+ ..+..||+.+.
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n- 116 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN- 116 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC-
Confidence 678888544 367889998765567986443221 11111134566777777643 24788888764
Q ss_pred EeEEEec
Q 002016 118 MVWESFL 124 (981)
Q Consensus 118 llWe~~~ 124 (981)
.|+.-.
T Consensus 117 -~W~~~~ 122 (376)
T PRK14131 117 -SWQKLD 122 (376)
T ss_pred -EEEeCC
Confidence 587643
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=88.65 E-value=8.4 Score=45.10 Aligned_cols=131 Identities=15% Similarity=0.247 Sum_probs=79.1
Q ss_pred CEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEec--cCccccC
Q 002016 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL--RGSKHSK 131 (981)
Q Consensus 54 ~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~--~~~~~s~ 131 (981)
-.++.++.+|.|.--|.++-. -|-..++.+..+... .+...+-.+++..|+.|+.||..+|..+=-... ...+.
T Consensus 167 hivvtGsYDg~vrl~DtR~~~-~~v~elnhg~pVe~v-l~lpsgs~iasAgGn~vkVWDl~~G~qll~~~~~H~KtVT-- 242 (487)
T KOG0310|consen 167 HIVVTGSYDGKVRLWDTRSLT-SRVVELNHGCPVESV-LALPSGSLIASAGGNSVKVWDLTTGGQLLTSMFNHNKTVT-- 242 (487)
T ss_pred eEEEecCCCceEEEEEeccCC-ceeEEecCCCceeeE-EEcCCCCEEEEcCCCeEEEEEecCCceehhhhhcccceEE--
Confidence 358889999999999998765 688888766445433 234444444466678999999997765533222 12111
Q ss_pred CceeecccccccCCcEEEEEe-CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecC
Q 002016 132 PLLLVPTNLKVDKDSLILVSS-KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~~-~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g 198 (981)
.+.+. ..+..++-.+ |+.|-.+|..+=++.-+++.+.+.++ +-.+.++..++ +|..+
T Consensus 243 cL~l~------s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~pvLs---iavs~dd~t~v-iGmsn 300 (487)
T KOG0310|consen 243 CLRLA------SDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGPVLS---IAVSPDDQTVV-IGMSN 300 (487)
T ss_pred EEEee------cCCceEeecccccceEEEEccceEEEEeeecccceee---EEecCCCceEE-Eeccc
Confidence 11121 1112233333 99999999888888766666666542 21123444444 56554
No 80
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=88.39 E-value=32 Score=39.15 Aligned_cols=162 Identities=9% Similarity=0.087 Sum_probs=85.6
Q ss_pred CCEEEEEcCC--CEEEEEECCCCccceEEEcCCCc--cee-eeeeeecCeEEEEEccC-----------CEEEEEeCCCC
Q 002016 53 RKRVVVSTEE--NVIASLDLRHGEIFWRHVLGIND--VVD-GIDIALGKYVITLSSDG-----------STLRAWNLPDG 116 (981)
Q Consensus 53 ~~~VyvaT~~--g~L~ALd~~tG~ivWR~~l~~~~--~i~-~l~~~~~~~vV~Vs~~g-----------~~V~A~da~tG 116 (981)
++.||+.... +.+..+|+.+.+-.|+...+.+. ... ++ +..++.++++||.+ ..+..+|+.+.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~-~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~ 95 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVA-AAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKN 95 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceE-EEECCEEEEEeCCCCCCCCCcceecccEEEEECCCC
Confidence 6788886553 57888998666678997554321 111 22 34677777777742 24677787654
Q ss_pred cEeEEEeccCccccCCceeecccccccCCcEEEEEe--C---------------------------------------CE
Q 002016 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K---------------------------------------GC 155 (981)
Q Consensus 117 ~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~---------------------------------------g~ 155 (981)
.|+.-...... . .......+..++.|++.+ + ..
T Consensus 96 --~W~~~~~~~p~--~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (346)
T TIGR03547 96 --SWQKLDTRSPV--G--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKN 169 (346)
T ss_pred --EEecCCCCCCC--c--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccce
Confidence 47754321111 0 000000001255677753 1 35
Q ss_pred EEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCc---eeEEEEEECCCCceeeeeeeecc
Q 002016 156 LHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS---QFHAYQINAMNGELLNHETAAFS 223 (981)
Q Consensus 156 l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~---~~~v~aLd~~tG~~lw~~~v~~p 223 (981)
+..+|+.+. .|+...+.+........-+..++.+|++|-.... ...+..+|....+-.|+..-..|
T Consensus 170 v~~YDp~t~--~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~ 238 (346)
T TIGR03547 170 VLSYDPSTN--QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLP 238 (346)
T ss_pred EEEEECCCC--ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCC
Confidence 777887765 5877544321100111112457899998753211 12345566666667798644443
No 81
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=88.37 E-value=22 Score=47.13 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=84.3
Q ss_pred CCEEEEEc-CCCEEEEEECCCCccceEEEcCCC------c---------ceeeeeeeecCeEEEEE-ccCCEEEEEeCCC
Q 002016 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGIN------D---------VVDGIDIALGKYVITLS-SDGSTLRAWNLPD 115 (981)
Q Consensus 53 ~~~VyvaT-~~g~L~ALd~~tG~ivWR~~l~~~------~---------~i~~l~~~~~~~vV~Vs-~~g~~V~A~da~t 115 (981)
++.+|++. .++.|..+|+.+|.+. .....+ + ...++....+++.++|+ ..+++|+.||..+
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~t 771 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKT 771 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCC
Confidence 56788885 5678999998888542 110000 0 00122112233445554 4557999999999
Q ss_pred CcEeEEEeccC-------------ccccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCc-----
Q 002016 116 GQMVWESFLRG-------------SKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAE----- 175 (981)
Q Consensus 116 G~llWe~~~~~-------------~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~----- 175 (981)
|...|-..... +.........|.....+.++.++|. .++++..+|.++|.+.........
T Consensus 772 g~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG 851 (1057)
T PLN02919 772 GGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDG 851 (1057)
T ss_pred CcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCC
Confidence 88765432110 0000000000111111234557775 489999999999987754432210
Q ss_pred -----ce-eeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCcee
Q 002016 176 -----SV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (981)
Q Consensus 176 -----~~-~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~l 215 (981)
.+ .|..+. ...++.+|+....++ .+..+|+.+|+..
T Consensus 852 ~~~~a~l~~P~GIa-vd~dG~lyVaDt~Nn---~Irvid~~~~~~~ 893 (1057)
T PLN02919 852 KALKAQLSEPAGLA-LGENGRLFVADTNNS---LIRYLDLNKGEAA 893 (1057)
T ss_pred cccccccCCceEEE-EeCCCCEEEEECCCC---EEEEEECCCCccc
Confidence 01 233443 234667888654443 5888899888764
No 82
>PHA02790 Kelch-like protein; Provisional
Probab=87.76 E-value=15 Score=44.26 Aligned_cols=147 Identities=7% Similarity=-0.014 Sum_probs=79.3
Q ss_pred CCCEEEEEcCC---CEEEEEECCCCccceEEEcCCCcceee-eeeeecCeEEEEEccC---CEEEEEeCCCCcEeEEEec
Q 002016 52 GRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDG-IDIALGKYVITLSSDG---STLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 52 ~~~~VyvaT~~---g~L~ALd~~tG~ivWR~~l~~~~~i~~-l~~~~~~~vV~Vs~~g---~~V~A~da~tG~llWe~~~ 124 (981)
-++.||+..+. ..+-..|+.++ .|+..-+-+..-.. ..++.++.++++||.+ ..+..||+.++ .|+.-.
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n--~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDA--AWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD--QWQFGP 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCC--eEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC--EEEeCC
Confidence 46788887764 34677787766 48764332211111 1134566677767642 35778898765 688643
Q ss_pred cCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEeccCcc-eeeeEEEEeecCCeEEEEEecC-Cc-e
Q 002016 125 RGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGYAG-SS-Q 201 (981)
Q Consensus 125 ~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~~~-~~~~~vv~s~~~~~Vyvvg~~g-~~-~ 201 (981)
+-+. +. .. ...+.-++.++|.+ |.+.++|.+++ .|+.-.+.+. ..-..+ +.-++.+|++|... +. .
T Consensus 393 ~m~~---~r--~~-~~~~~~~~~IYv~G-G~~e~ydp~~~--~W~~~~~m~~~r~~~~~--~v~~~~IYviGG~~~~~~~ 461 (480)
T PHA02790 393 STYY---PH--YK-SCALVFGRRLFLVG-RNAEFYCESSN--TWTLIDDPIYPRDNPEL--IIVDNKLLLIGGFYRGSYI 461 (480)
T ss_pred CCCC---cc--cc-ceEEEECCEEEEEC-CceEEecCCCC--cEeEcCCCCCCccccEE--EEECCEEEEECCcCCCccc
Confidence 2111 00 00 01112255666654 55778888765 7986543221 101112 34688999987532 11 1
Q ss_pred eEEEEEECCCCc
Q 002016 202 FHAYQINAMNGE 213 (981)
Q Consensus 202 ~~v~aLd~~tG~ 213 (981)
-.+.++|+.+++
T Consensus 462 ~~ve~Yd~~~~~ 473 (480)
T PHA02790 462 DTIEVYNNRTYS 473 (480)
T ss_pred ceEEEEECCCCe
Confidence 246677887664
No 83
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.62 E-value=44 Score=35.90 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=80.9
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCc----ceeeeeeeecCeEEEEEccC---------CEEEEEeCCCCcEe
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND----VVDGIDIALGKYVITLSSDG---------STLRAWNLPDGQMV 119 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~----~i~~l~~~~~~~vV~Vs~~g---------~~V~A~da~tG~ll 119 (981)
++++|++...+. ..+|+++|++.--....... ....+ +...++.++++..+ +.++-+++. |+..
T Consensus 51 ~g~l~v~~~~~~-~~~d~~~g~~~~~~~~~~~~~~~~~~ND~-~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~ 127 (246)
T PF08450_consen 51 DGRLYVADSGGI-AVVDPDTGKVTVLADLPDGGVPFNRPNDV-AVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVT 127 (246)
T ss_dssp TSEEEEEETTCE-EEEETTTTEEEEEEEEETTCSCTEEEEEE-EE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEE
T ss_pred CCEEEEEEcCce-EEEecCCCcEEEEeeccCCCcccCCCceE-EEcCCCCEEEEecCCCccccccccceEEECCC-CeEE
Confidence 688999988765 44499999765444442111 11122 23344556655321 468888887 6643
Q ss_pred EEE-eccCccccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEE-----EeccCcceeeeEEEEeecCCeE
Q 002016 120 WES-FLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWT-----RDFAAESVEVQQVIQLDESDQI 191 (981)
Q Consensus 120 We~-~~~~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~-----~~~~~~~~~~~~vv~s~~~~~V 191 (981)
.-. .+..+ .++.+- ..++.+++. ..+++++++.......+. ...+...-.|..+. ...++.+
T Consensus 128 ~~~~~~~~p---NGi~~s------~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~-vD~~G~l 197 (246)
T PF08450_consen 128 VVADGLGFP---NGIAFS------PDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLA-VDSDGNL 197 (246)
T ss_dssp EEEEEESSE---EEEEEE------TTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEE-EBTTS-E
T ss_pred EEecCcccc---cceEEC------CcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcce-EcCCCCE
Confidence 222 12111 122222 124466665 388899988853222111 22222211133443 3468899
Q ss_pred EEEEecCCceeEEEEEECCCCceeeeeeee
Q 002016 192 YVVGYAGSSQFHAYQINAMNGELLNHETAA 221 (981)
Q Consensus 192 yvvg~~g~~~~~v~aLd~~tG~~lw~~~v~ 221 (981)
|+..+.++ ++..+|+. |+++-+..+.
T Consensus 198 ~va~~~~~---~I~~~~p~-G~~~~~i~~p 223 (246)
T PF08450_consen 198 WVADWGGG---RIVVFDPD-GKLLREIELP 223 (246)
T ss_dssp EEEEETTT---EEEEEETT-SCEEEEEE-S
T ss_pred EEEEcCCC---EEEEECCC-ccEEEEEcCC
Confidence 98776554 69999987 9998776544
No 84
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=87.47 E-value=45 Score=35.84 Aligned_cols=143 Identities=14% Similarity=0.137 Sum_probs=74.0
Q ss_pred CCEEEEEc-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 53 RKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT-~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
++.+|+.+ ..+.|+.+|+++|+.. ...++. ..++.....++.++++..+ .++.+|..+|+..--........
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~-~~~~~~---~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~~~~~-- 83 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVE-VIDLPG---PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLPDGGV-- 83 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEE-EEESSS---EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEETTCS--
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEE-EEecCC---CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeeccCCCc--
Confidence 67788777 5789999999888642 222332 2233222234666666554 35555999996654444321110
Q ss_pred CceeecccccccCCcEEEEEe--C--------CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCce
Q 002016 132 PLLLVPTNLKVDKDSLILVSS--K--------GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~~--~--------g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
....+-....+.++.+++.. . |.|++++.. |+...-...-. .+-.+..+.++..+|+.....+
T Consensus 84 -~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~---~pNGi~~s~dg~~lyv~ds~~~-- 156 (246)
T PF08450_consen 84 -PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG---FPNGIAFSPDGKTLYVADSFNG-- 156 (246)
T ss_dssp -CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES---SEEEEEEETTSSEEEEEETTTT--
T ss_pred -ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc---cccceEECCcchheeecccccc--
Confidence 01111111223455677742 1 789999988 77543332211 1223332345567777544333
Q ss_pred eEEEEEECC
Q 002016 202 FHAYQINAM 210 (981)
Q Consensus 202 ~~v~aLd~~ 210 (981)
++..++..
T Consensus 157 -~i~~~~~~ 164 (246)
T PF08450_consen 157 -RIWRFDLD 164 (246)
T ss_dssp -EEEEEEEE
T ss_pred -eeEEEecc
Confidence 46666654
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=87.47 E-value=54 Score=36.75 Aligned_cols=217 Identities=17% Similarity=0.204 Sum_probs=112.1
Q ss_pred cccccccccccEeE---EEeccCceeeeeeeecccCCCEEEEEcC--CCEEEEEECCCCccceEEEcCCCcceeeeeeee
Q 002016 20 SLSLYEDQVGLMDW---HQQYIGKVKHAVFHTQKTGRKRVVVSTE--ENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL 94 (981)
Q Consensus 20 ~~AlyedqvG~~dW---~~~~vG~~~~~~f~~~~~~~~~VyvaT~--~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~ 94 (981)
+.-||....|+..= +++| |.- .+.|.. .+..+..+|. +..|.-|+..|-+-+=-+ -+-...+..+.+.-
T Consensus 37 sl~LYd~~~g~~~~ti~skky-G~~-~~~Fth---~~~~~i~sStk~d~tIryLsl~dNkylRYF-~GH~~~V~sL~~sP 110 (311)
T KOG1446|consen 37 SLRLYDSLSGKQVKTINSKKY-GVD-LACFTH---HSNTVIHSSTKEDDTIRYLSLHDNKYLRYF-PGHKKRVNSLSVSP 110 (311)
T ss_pred eEEEEEcCCCceeeEeecccc-ccc-EEEEec---CCceEEEccCCCCCceEEEEeecCceEEEc-CCCCceEEEEEecC
Confidence 55678777776432 2223 222 223332 2455666665 678999998886543221 12222344443333
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEe-CC-EEEEEECCC--CcEeEEE
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS-KG-CLHAVSSID--GEILWTR 170 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~-~g-~l~aLd~~t--G~~~W~~ 170 (981)
.++.+.=++.+++||.||...=+-.=-..+.+. ++... +..|.+++.. ++ .+.-+|..+ +.+-=++
T Consensus 111 ~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~Af------Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 111 KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAF------DPEGLIFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred CCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeE------CCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence 445555355678999999863222211222221 11111 3355677753 33 566666543 2333333
Q ss_pred eccCcce-eeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCC-ccCceEEE-cCcEEEEEECCCCe
Q 002016 171 DFAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGG-FVGDVALV-SSDTLVTLDTTRSI 247 (981)
Q Consensus 171 ~~~~~~~-~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~-~~~~~~~v-g~~~lv~~d~~~g~ 247 (981)
....+.. +...+-- ..+|....++..++ .++.+|+-+|.++-..+.....+ +..++.+. .+..+.+.+ ++|.
T Consensus 181 ~i~~~~~~ew~~l~F-S~dGK~iLlsT~~s---~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs-~dg~ 255 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEF-SPDGKSILLSTNAS---FIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGS-DDGT 255 (311)
T ss_pred ccCCCCccceeeeEE-cCCCCEEEEEeCCC---cEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEec-CCCc
Confidence 3331111 1122221 24555555565554 47889999999877665433222 33344443 444444443 5799
Q ss_pred EEEEEeecCe
Q 002016 248 LVTVSFKNRK 257 (981)
Q Consensus 248 L~v~~L~sg~ 257 (981)
+++-.+++|.
T Consensus 256 i~vw~~~tg~ 265 (311)
T KOG1446|consen 256 IHVWNLETGK 265 (311)
T ss_pred EEEEEcCCCc
Confidence 9999999987
No 86
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=87.41 E-value=16 Score=39.76 Aligned_cols=108 Identities=18% Similarity=0.247 Sum_probs=73.2
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-EeCCEEEEEECCCCcEeEEEecc
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
.+..+.-+++++.||.||..||+..=...+..++- ++.+. .++.++. ..++.+.-+|+++=.++=+++.|
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt--SlEvs-------~dG~ilTia~gssV~Fwdaksf~~lKs~k~P 224 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT--SLEVS-------QDGRILTIAYGSSVKFWDAKSFGLLKSYKMP 224 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCc--ceeec-------cCCCEEEEecCceeEEeccccccceeeccCc
Confidence 33344325778899999999999998888877653 44443 2344455 46888999999998888888776
Q ss_pred CcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 174 AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
.... -..+ . -...+||.| +..++++-+|-.||+-+-.+
T Consensus 225 ~nV~-SASL--~-P~k~~fVaG---ged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 225 CNVE-SASL--H-PKKEFFVAG---GEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred cccc-cccc--c-CCCceEEec---CcceEEEEEeccCCceeeec
Confidence 4321 1111 1 223566644 34568999999999988664
No 87
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=86.04 E-value=35 Score=43.12 Aligned_cols=153 Identities=17% Similarity=0.113 Sum_probs=97.3
Q ss_pred CCCEEEEEcCCCEEEEEECCCCc---cceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGE---IFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~---ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~ 128 (981)
..+.+.++|+++.|.+..-.+|+ ++=|+.++-. .+.+..++..++.|+++-.|..++..|+...-..+...+.
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r----~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap 140 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIR----DLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP 140 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccce----EEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc
Confidence 45678899999999888766664 4455554332 3312234446666777888999999999888777766543
Q ss_pred ccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCccee------eeEEEEeecCCeEEEEEecCCce
Q 002016 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVE------VQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 129 ~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~------~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
. ..+.+- .++..+.+. ++|.|+.+|..+|...=++..-.+..+ .-++.....++..-+.+..+
T Consensus 141 V-l~l~~~------p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~--- 210 (933)
T KOG1274|consen 141 V-LQLSYD------PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN--- 210 (933)
T ss_pred e-eeeeEc------CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC---
Confidence 3 122222 235556664 799999999999998765554333221 11111234566776666665
Q ss_pred eEEEEEECCCCceeeeee
Q 002016 202 FHAYQINAMNGELLNHET 219 (981)
Q Consensus 202 ~~v~aLd~~tG~~lw~~~ 219 (981)
.|..++..+++.....+
T Consensus 211 -~Vkvy~r~~we~~f~Lr 227 (933)
T KOG1274|consen 211 -TVKVYSRKGWELQFKLR 227 (933)
T ss_pred -eEEEEccCCceeheeec
Confidence 47888888877765553
No 88
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=85.98 E-value=22 Score=43.86 Aligned_cols=193 Identities=14% Similarity=0.230 Sum_probs=107.1
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccc--eEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIF--WRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~iv--WR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
++..+|++.....+.-.+..+|+.+ |+..=+.+ +-.......+.++..+|.++.|+.||...|...=..+..+++.
T Consensus 73 d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~P--vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gGvV 150 (775)
T KOG0319|consen 73 DEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAP--VITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHSFKGHGGVV 150 (775)
T ss_pred CccEEEEeeccceEEEEEcccchHhHhHhhccCCC--eEEEEEcCCCceEEeccccceEEEEEeeCCEEEEEecCCCceE
Confidence 5677999999999999999999764 54432333 2222112334666666667899999999999988888766554
Q ss_pred cCCceeecccccccCCcEEEE-E-eCCEEEEEECCCCcE----------------------------------eEEEecc
Q 002016 130 SKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEI----------------------------------LWTRDFA 173 (981)
Q Consensus 130 s~~~~~v~~~~~~~~~~~V~V-~-~~g~l~aLd~~tG~~----------------------------------~W~~~~~ 173 (981)
..+.+-|. . ...+++ . .|+.+++.|..++.. +|.+..-
T Consensus 151 -ssl~F~~~----~-~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~ 224 (775)
T KOG0319|consen 151 -SSLLFHPH----W-NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQY 224 (775)
T ss_pred -EEEEeCCc----c-chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhh
Confidence 11111110 1 111222 2 367777777665554 2443111
Q ss_pred Ccc--e----eeeEEEEeec-----CCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEE
Q 002016 174 AES--V----EVQQVIQLDE-----SDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLD 242 (981)
Q Consensus 174 ~~~--~----~~~~vv~s~~-----~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d 242 (981)
... + ..+.++.... +..++.+|-.| .+--.|.++|+.+...+.+....+.+-.++.+.+.+.++.
T Consensus 225 ~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g----~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vt 300 (775)
T KOG0319|consen 225 KKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG----VVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVT 300 (775)
T ss_pred hhhheechhhheeeEEEechhcCCcceEEEEecCCc----eEEEEecccchhhhhhccCCchhhhcceeccccCceEEEE
Confidence 000 0 1122221111 22344433333 5777899999988766544222244434444556666665
Q ss_pred CCCCeEEEEEeecCe
Q 002016 243 TTRSILVTVSFKNRK 257 (981)
Q Consensus 243 ~~~g~L~v~~L~sg~ 257 (981)
++ .++...+..+..
T Consensus 301 ae-Qnl~l~d~~~l~ 314 (775)
T KOG0319|consen 301 AE-QNLFLYDEDELT 314 (775)
T ss_pred cc-ceEEEEEccccE
Confidence 43 567777777665
No 89
>PRK05137 tolB translocation protein TolB; Provisional
Probab=85.91 E-value=81 Score=37.25 Aligned_cols=187 Identities=16% Similarity=0.084 Sum_probs=88.5
Q ss_pred CCCEEEEEcC---CCEEEEEECCCCccceEEEcCCCcceeeeee-eecCeEEEEEcc--CCEEEEEeCCCCcEeEEEecc
Q 002016 52 GRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 52 ~~~~VyvaT~---~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~-~~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~~ 125 (981)
++++|+..+. +..|+.+|..+|+. ++....++....... +.|+.+++.... ...++.||..+|++. ++.
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~Lt 286 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT---RLT 286 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE---Ecc
Confidence 4556555543 46899999999864 222222211111111 244455554332 246999999888753 232
Q ss_pred Ccc-ccCCceeecccccccCCcEEEEEe----CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCc
Q 002016 126 GSK-HSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (981)
Q Consensus 126 ~~~-~s~~~~~v~~~~~~~~~~~V~V~~----~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~ 200 (981)
... ......+.| + +..+++.+ ...++.+|..+|+..--.... ... .....+.++..+++....++
T Consensus 287 ~~~~~~~~~~~sp-----D-G~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~-~~~--~~~~~SpdG~~ia~~~~~~~- 356 (435)
T PRK05137 287 DSPAIDTSPSYSP-----D-GSQIVFESDRSGSPQLYVMNADGSNPRRISFGG-GRY--STPVWSPRGDLIAFTKQGGG- 356 (435)
T ss_pred CCCCccCceeEcC-----C-CCEEEEEECCCCCCeEEEEECCCCCeEEeecCC-Ccc--cCeEECCCCCEEEEEEcCCC-
Confidence 211 101111111 2 33343332 247999998877654322111 111 11112346666666554332
Q ss_pred eeEEEEEECCCCceeeeeeeeccCCccCceEEE-cCcEEEEEECCC-----CeEEEEEeecCe
Q 002016 201 QFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTR-----SILVTVSFKNRK 257 (981)
Q Consensus 201 ~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~v-g~~~lv~~d~~~-----g~L~v~~L~sg~ 257 (981)
..++..+|+.+|... . +...... ..+.+. .+..+++..... ..|++.++..+.
T Consensus 357 ~~~i~~~d~~~~~~~-~--lt~~~~~-~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 357 QFSIGVMKPDGSGER-I--LTSGFLV-EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred ceEEEEEECCCCceE-e--ccCCCCC-CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 346778887666432 1 1111111 122222 334554443222 368888886654
No 90
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=85.86 E-value=57 Score=35.40 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=76.7
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEec
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDF 172 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~ 172 (981)
|+..++ .|.+.+|+.||+..|.++-++...+-.. -++... .|+.=+.. .|..++..|..||++.-+++.
T Consensus 29 GnY~lt-cGsdrtvrLWNp~rg~liktYsghG~EV-lD~~~s-------~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rg 99 (307)
T KOG0316|consen 29 GNYCLT-CGSDRTVRLWNPLRGALIKTYSGHGHEV-LDAALS-------SDNSKFASCGGDKAVQVWDVNTGKVDRRFRG 99 (307)
T ss_pred CCEEEE-cCCCceEEeecccccceeeeecCCCcee-eecccc-------ccccccccCCCCceEEEEEcccCeeeeeccc
Confidence 444555 4556899999999999999998876543 122111 23333443 366889999999998766655
Q ss_pred cCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccC-ceEEEcCcEEEEEECCCCeEEEE
Q 002016 173 AAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVALVSSDTLVTLDTTRSILVTV 251 (981)
Q Consensus 173 ~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~-~~~~vg~~~lv~~d~~~g~L~v~ 251 (981)
-.......+. -....|.+.|--. -.+.+.|-.+-..-=-+.+... ..+ ..+-+.+..++... ..|.++..
T Consensus 100 H~aqVNtV~f---NeesSVv~SgsfD---~s~r~wDCRS~s~ePiQildea--~D~V~Si~v~~heIvaGS-~DGtvRty 170 (307)
T KOG0316|consen 100 HLAQVNTVRF---NEESSVVASGSFD---SSVRLWDCRSRSFEPIQILDEA--KDGVSSIDVAEHEIVAGS-VDGTVRTY 170 (307)
T ss_pred ccceeeEEEe---cCcceEEEecccc---ceeEEEEcccCCCCccchhhhh--cCceeEEEecccEEEeec-cCCcEEEE
Confidence 4333211111 1222333322111 1355555433221100000000 011 11223445666654 46899999
Q ss_pred EeecCe
Q 002016 252 SFKNRK 257 (981)
Q Consensus 252 ~L~sg~ 257 (981)
++..|.
T Consensus 171 diR~G~ 176 (307)
T KOG0316|consen 171 DIRKGT 176 (307)
T ss_pred Eeecce
Confidence 999887
No 91
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=85.71 E-value=68 Score=36.50 Aligned_cols=137 Identities=9% Similarity=0.067 Sum_probs=69.6
Q ss_pred CCCEEEEEcCC------------CEEEEEECCCCccceEEEcC-CCcceeeee-e-eecCeEEEEEccC-----------
Q 002016 52 GRKRVVVSTEE------------NVIASLDLRHGEIFWRHVLG-INDVVDGID-I-ALGKYVITLSSDG----------- 105 (981)
Q Consensus 52 ~~~~VyvaT~~------------g~L~ALd~~tG~ivWR~~l~-~~~~i~~l~-~-~~~~~vV~Vs~~g----------- 105 (981)
-++.||+.... +.+..+|+.+.+ |+.... .+....+.. . ..++.++++||.+
T Consensus 62 ~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~--W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~ 139 (346)
T TIGR03547 62 IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS--WQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADL 139 (346)
T ss_pred ECCEEEEEeCCCCCCCCCcceecccEEEEECCCCE--EecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhH
Confidence 46788987753 347788988764 987642 111111111 1 2466666667642
Q ss_pred ----------------------------CEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeC----
Q 002016 106 ----------------------------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK---- 153 (981)
Q Consensus 106 ----------------------------~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~---- 153 (981)
+.+..+|+.+. .|+.-..-+.. .. . ....+..++.++|.++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~--~W~~~~~~p~~--~r--~-~~~~~~~~~~iyv~GG~~~~ 212 (346)
T TIGR03547 140 SAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN--QWRNLGENPFL--GT--A-GSAIVHKGNKLLLINGEIKP 212 (346)
T ss_pred hhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC--ceeECccCCCC--cC--C-CceEEEECCEEEEEeeeeCC
Confidence 46788888765 58764321110 00 0 0011122456666531
Q ss_pred ----CEEEEEECCCCcEeEEEeccCcce--e-e---eEEEEeecCCeEEEEEec
Q 002016 154 ----GCLHAVSSIDGEILWTRDFAAESV--E-V---QQVIQLDESDQIYVVGYA 197 (981)
Q Consensus 154 ----g~l~aLd~~tG~~~W~~~~~~~~~--~-~---~~vv~s~~~~~Vyvvg~~ 197 (981)
..+..++....+-.|+...+.+.- . + ....-...++.+|++|-.
T Consensus 213 ~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~ 266 (346)
T TIGR03547 213 GLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGA 266 (346)
T ss_pred CccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecC
Confidence 124556665566779865443210 0 0 111112458899998753
No 92
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=85.58 E-value=12 Score=42.27 Aligned_cols=116 Identities=14% Similarity=0.181 Sum_probs=64.0
Q ss_pred CCEEEEEcC-CCEEEEEECCCCccceEEEcCCCc-------cee---eeeee---ecCeEEEE-Ec----------cCCE
Q 002016 53 RKRVVVSTE-ENVIASLDLRHGEIFWRHVLGIND-------VVD---GIDIA---LGKYVITL-SS----------DGST 107 (981)
Q Consensus 53 ~~~VyvaT~-~g~L~ALd~~tG~ivWR~~l~~~~-------~i~---~l~~~---~~~~vV~V-s~----------~g~~ 107 (981)
++.+++.++ -..|+.+|++||+++|+..=+... .+. -.+.. .+++.+.+ -. ..+.
T Consensus 154 ~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~~~~~~~~~~s~~~ 233 (299)
T PF14269_consen 154 DGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNANSDFNGTEPSRGL 233 (299)
T ss_pred CccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCCCCCCCCCcCCCce
Confidence 445666665 479999999999999997422010 010 00111 12333333 11 2368
Q ss_pred EEEEeCCCCcEeEEEecc-CccccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEe
Q 002016 108 LRAWNLPDGQMVWESFLR-GSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRD 171 (981)
Q Consensus 108 V~A~da~tG~llWe~~~~-~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~ 171 (981)
+..+|..+....|..... .+.- .-....+.......+ -++|. ..|++.-++ .+|+++|++.
T Consensus 234 v~~ld~~~~~~~~~~~~~~~~~~-~~s~~~G~~Q~L~nG-n~li~~g~~g~~~E~~-~~G~vv~~~~ 297 (299)
T PF14269_consen 234 VLELDPETMTVTLVREYSDHPDG-FYSPSQGSAQRLPNG-NVLIGWGNNGRISEFT-PDGEVVWEAQ 297 (299)
T ss_pred EEEEECCCCEEEEEEEeecCCCc-ccccCCCcceECCCC-CEEEecCCCceEEEEC-CCCCEEEEEE
Confidence 999999988776666554 1110 001111110111223 35664 478888888 7899999985
No 93
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.80 E-value=35 Score=40.75 Aligned_cols=157 Identities=16% Similarity=0.223 Sum_probs=86.7
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEec-cCccccC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL-RGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~-~~~~~s~ 131 (981)
+..++-++.++.+..-|.++|+..=......+ .+.++....++..++.++.++.++.||..+|..+ -... .....+.
T Consensus 258 g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~~ 335 (456)
T KOG0266|consen 258 GNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENSA 335 (456)
T ss_pred CCEEEEecCCCcEEEEeccCCeEEEeeeccCC-ceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCCC
Confidence 46799999999999999999887655444333 3434422233444444566789999999999954 1111 1111100
Q ss_pred CceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcc-eeeeEEEEeecCCeEEEEEecCCceeEEEEEEC
Q 002016 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~-~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~ 209 (981)
+...+ . . ...++++++. .|+.+.-.|..+|+..=++...... ........ ..++...+.|...+ .++..|.
T Consensus 336 ~~~~~-~-f-sp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~sg~~d~---~v~~~~~ 408 (456)
T KOG0266|consen 336 PVTSV-Q-F-SPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL-STGGKLIYSGSEDG---SVYVWDS 408 (456)
T ss_pred ceeEE-E-E-CCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc-cCCCCeEEEEeCCc---eEEEEeC
Confidence 01111 0 0 0124455554 3668888888888766554443221 12222222 23334433343332 5888899
Q ss_pred CCCceeeee
Q 002016 210 MNGELLNHE 218 (981)
Q Consensus 210 ~tG~~lw~~ 218 (981)
.+|..+-..
T Consensus 409 ~s~~~~~~l 417 (456)
T KOG0266|consen 409 SSGGILQRL 417 (456)
T ss_pred Cccchhhhh
Confidence 888776444
No 94
>PRK03629 tolB translocation protein TolB; Provisional
Probab=84.36 E-value=95 Score=36.72 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=72.4
Q ss_pred CCCEEEEEc---CCCEEEEEECCCCccceEEEcCCCcceeeeee-eecCeEEEEEc-cC-CEEEEEeCCCCcEeEEEecc
Q 002016 52 GRKRVVVST---EENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSS-DG-STLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 52 ~~~~VyvaT---~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~-~~~~~vV~Vs~-~g-~~V~A~da~tG~llWe~~~~ 125 (981)
+++.+.+.+ ....|+..|..+|+..--..++.. ...... +.|..+++++. .| ..++.||.++|++.=-....
T Consensus 209 DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~--~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~ 286 (429)
T PRK03629 209 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR 286 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC--cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC
Confidence 455554443 345788889888874322122211 111111 24555666533 22 36999999988764211111
Q ss_pred CccccCCceeecccccccCCcEEEE-Ee-C--CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCce
Q 002016 126 GSKHSKPLLLVPTNLKVDKDSLILV-SS-K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 126 ~~~~s~~~~~v~~~~~~~~~~~V~V-~~-~--g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
. .. ....+.| + ++.++. .. + -.++.+|..+|+..--.... ... .....+.++..+++.+..++ .
T Consensus 287 ~-~~-~~~~wSP-----D-G~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~-~~~--~~~~~SpDG~~Ia~~~~~~g-~ 354 (429)
T PRK03629 287 S-NN-TEPTWFP-----D-SQNLAYTSDQAGRPQVYKVNINGGAPQRITWEG-SQN--QDADVSSDGKFMVMVSSNGG-Q 354 (429)
T ss_pred C-Cc-CceEECC-----C-CCEEEEEeCCCCCceEEEEECCCCCeEEeecCC-CCc--cCEEECCCCCEEEEEEccCC-C
Confidence 1 11 1111221 2 333433 32 2 37888898888654221111 111 11111345556655554432 2
Q ss_pred eEEEEEECCCCcee
Q 002016 202 FHAYQINAMNGELL 215 (981)
Q Consensus 202 ~~v~aLd~~tG~~l 215 (981)
..++.+|+.+|+..
T Consensus 355 ~~I~~~dl~~g~~~ 368 (429)
T PRK03629 355 QHIAKQDLATGGVQ 368 (429)
T ss_pred ceEEEEECCCCCeE
Confidence 45888899998743
No 95
>PRK04922 tolB translocation protein TolB; Provisional
Probab=84.35 E-value=95 Score=36.69 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=73.8
Q ss_pred CCCEEEEEcC---CCEEEEEECCCCccceEEEcCCCcceeeeee-eecCeEEEEEc-cC-CEEEEEeCCCCcEeEEEecc
Q 002016 52 GRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSS-DG-STLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 52 ~~~~VyvaT~---~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~-~~~~~vV~Vs~-~g-~~V~A~da~tG~llWe~~~~ 125 (981)
+++.+++.+. ...|+.+|.++|+..--..++ +....... +.++.+++... +| ..++.||..+|+.. +....
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~ 290 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--GINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNH 290 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--CCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccC
Confidence 4556666553 347999999888753221121 11111111 23445555432 22 47999999998753 21111
Q ss_pred CccccCCceeecccccccCCcEEEEEe--C--CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCce
Q 002016 126 GSKHSKPLLLVPTNLKVDKDSLILVSS--K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 126 ~~~~s~~~~~v~~~~~~~~~~~V~V~~--~--g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
.... ....+.| + +..+++.+ + ..++.+|..+|+..--........ ....+.++..+++....++ .
T Consensus 291 ~~~~-~~~~~sp-----D-G~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~---~~~~SpDG~~Ia~~~~~~~-~ 359 (433)
T PRK04922 291 FGID-TEPTWAP-----D-GKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNA---RASVSPDGKKIAMVHGSGG-Q 359 (433)
T ss_pred CCCc-cceEECC-----C-CCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCcc---CEEECCCCCEEEEEECCCC-c
Confidence 1111 1111221 2 33344432 2 358889988887532211111111 1112345666666544332 3
Q ss_pred eEEEEEECCCCcee
Q 002016 202 FHAYQINAMNGELL 215 (981)
Q Consensus 202 ~~v~aLd~~tG~~l 215 (981)
..+..+|+.+|+..
T Consensus 360 ~~I~v~d~~~g~~~ 373 (433)
T PRK04922 360 YRIAVMDLSTGSVR 373 (433)
T ss_pred eeEEEEECCCCCeE
Confidence 46888899888764
No 96
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=84.30 E-value=2.7 Score=45.25 Aligned_cols=68 Identities=19% Similarity=0.279 Sum_probs=45.6
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCeEEEEEccCCEEEEEeCCCCcEeEE
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQMVWE 121 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~-~~~~vV~Vs~~g~~V~A~da~tG~llWe 121 (981)
..+.|++|..+++++.+|.+||++.=...=. .+.+..+ +. ....-+.-|+.+|.+|.||..||+-.=.
T Consensus 125 ~enSi~~AgGD~~~y~~dlE~G~i~r~~rGH-tDYvH~v-v~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ 193 (325)
T KOG0649|consen 125 SENSILFAGGDGVIYQVDLEDGRIQREYRGH-TDYVHSV-VGRNANGQILSGAEDGTVRVWDTKTQKHVSM 193 (325)
T ss_pred CCCcEEEecCCeEEEEEEecCCEEEEEEcCC-cceeeee-eecccCcceeecCCCccEEEEeccccceeEE
Confidence 4667899999999999999999864333211 1233333 11 2233444377788999999999987643
No 97
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=83.44 E-value=9.3 Score=46.04 Aligned_cols=150 Identities=16% Similarity=0.226 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCC-------c--------ceeeeee-eecCeEEEEEccCCEEEEEeCCC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-------D--------VVDGIDI-ALGKYVITLSSDGSTLRAWNLPD 115 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-------~--------~i~~l~~-~~~~~vV~Vs~~g~~V~A~da~t 115 (981)
++.++-|++++|.|- +||...+.- . .|..++- +.+.+++.+++++.+++.||..+
T Consensus 639 D~~rLAVa~ddg~i~---------lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~ 709 (1012)
T KOG1445|consen 639 DDERLAVATDDGQIN---------LWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLAN 709 (1012)
T ss_pred ChHHeeecccCceEE---------EEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhh
Confidence 466788898888763 577654321 0 1222221 24456777777788999999999
Q ss_pred CcEeEEEeccCccccCCceeecccccccCCcEEEE-E-eCCEEEEEECCCCcEe-EEEeccCcceeeeEEEEeecCCeEE
Q 002016 116 GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S-SKGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIY 192 (981)
Q Consensus 116 G~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~-~~g~l~aLd~~tG~~~-W~~~~~~~~~~~~~vv~s~~~~~Vy 192 (981)
+++.=+........ -+...- .++..++ . .||+++.+++.++++- .+-+.+.+. .-.+++.+-++..|.
T Consensus 710 ~~~~~~l~gHtdqI-f~~AWS-------pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgt-RgARi~wacdgr~vi 780 (1012)
T KOG1445|consen 710 AKLYSRLVGHTDQI-FGIAWS-------PDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGT-RGARILWACDGRIVI 780 (1012)
T ss_pred hhhhheeccCcCce-eEEEEC-------CCCcceeeeecCceEEEeCCCCCCCccccCCCCccC-cceeEEEEecCcEEE
Confidence 99987776654432 122111 2333333 3 5999999999998753 443333332 234444455777888
Q ss_pred EEEecCCceeEEEEEECC--CCceeeeee
Q 002016 193 VVGYAGSSQFHAYQINAM--NGELLNHET 219 (981)
Q Consensus 193 vvg~~g~~~~~v~aLd~~--tG~~lw~~~ 219 (981)
++|++..+...+..+|++ +|.++....
T Consensus 781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~ 809 (1012)
T KOG1445|consen 781 VVGFDKSSERQVQMYDAQTLDLRPLYTQV 809 (1012)
T ss_pred EecccccchhhhhhhhhhhccCCcceeee
Confidence 888887655555556655 455555443
No 98
>PRK04792 tolB translocation protein TolB; Provisional
Probab=82.95 E-value=1.1e+02 Score=36.43 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=73.4
Q ss_pred CCCEEEEEc-CC--CEEEEEECCCCccceEEEcCCCcceeeee-eeecCeEEEEEccC--CEEEEEeCCCCcEeEEEecc
Q 002016 52 GRKRVVVST-EE--NVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSSDG--STLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 52 ~~~~VyvaT-~~--g~L~ALd~~tG~ivWR~~l~~~~~i~~l~-~~~~~~vV~Vs~~g--~~V~A~da~tG~llWe~~~~ 125 (981)
++++|+..+ ++ ..|+.+|..+|+.. +....++...... .+.++.+++.+..+ ..++.+|..+|+.. ++.
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~---~lt 302 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVRE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT---RIT 302 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE---ECc
Confidence 455555543 32 47999999988752 2111111111111 12455566654333 36999999888742 222
Q ss_pred Ccc-ccCCceeecccccccCCcEEEEEe----CCEEEEEECCCCcEeE-EEeccCcceeeeEEEEeecCCeEEEEEecCC
Q 002016 126 GSK-HSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILW-TRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (981)
Q Consensus 126 ~~~-~s~~~~~v~~~~~~~~~~~V~V~~----~g~l~aLd~~tG~~~W-~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~ 199 (981)
... ......+.| + +..+++.+ ...++.+|.++|+..- ++.. .... ....+.++..+++.+..++
T Consensus 303 ~~~~~~~~p~wSp-----D-G~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g-~~~~---~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 303 RHRAIDTEPSWHP-----D-GKSLIFTSERGGKPQIYRVNLASGKVSRLTFEG-EQNL---GGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred cCCCCccceEECC-----C-CCEEEEEECCCCCceEEEEECCCCCEEEEecCC-CCCc---CeeECCCCCEEEEEEecCC
Confidence 111 101111111 2 33344432 3479999998887532 1111 1111 1111346667776655432
Q ss_pred ceeEEEEEECCCCce
Q 002016 200 SQFHAYQINAMNGEL 214 (981)
Q Consensus 200 ~~~~v~aLd~~tG~~ 214 (981)
..+++.+|+.+|+.
T Consensus 373 -~~~I~~~dl~~g~~ 386 (448)
T PRK04792 373 -KFNIARQDLETGAM 386 (448)
T ss_pred -ceEEEEEECCCCCe
Confidence 34688899999875
No 99
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.80 E-value=41 Score=39.28 Aligned_cols=116 Identities=18% Similarity=0.228 Sum_probs=69.8
Q ss_pred eEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE--eCCEEEEEECC---CCcEeEEEe
Q 002016 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSI---DGEILWTRD 171 (981)
Q Consensus 97 ~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~---tG~~~W~~~ 171 (981)
++++=|+.+.+|..||.++|+..=.....+..+ +.+..-+. ...+++. .+++|...|.. +-...|++.
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~V-q~l~wh~~------~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKKV-QTLEWHPY------EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCce-eEEEecCC------CceEEEeccccceEEeeeccCccccCceEEec
Confidence 344434457899999999999987777555444 22322211 1224443 38888888876 444678886
Q ss_pred ccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECC-CCceeeeeeeeccCCccC
Q 002016 172 FAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM-NGELLNHETAAFSGGFVG 228 (981)
Q Consensus 172 ~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~-tG~~lw~~~v~~p~~~~~ 228 (981)
..- +.+..-......++++...| .|+-+|++ .|+++|+....-. ++++
T Consensus 330 g~V-----Ekv~w~~~se~~f~~~tddG---~v~~~D~R~~~~~vwt~~AHd~-~ISg 378 (463)
T KOG0270|consen 330 GEV-----EKVAWDPHSENSFFVSTDDG---TVYYFDIRNPGKPVWTLKAHDD-EISG 378 (463)
T ss_pred cce-----EEEEecCCCceeEEEecCCc---eEEeeecCCCCCceeEEEeccC-Ccce
Confidence 543 22321223444555565543 68889986 5799999865433 4444
No 100
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.23 E-value=38 Score=40.71 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=63.0
Q ss_pred CcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeec
Q 002016 145 DSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (981)
Q Consensus 145 ~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~ 222 (981)
|..++|+ ..|.+..++...|++.|+...+...-..-.+......+.+|-+|. ..++.-++.++++..-.+....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~a----d~~v~~~~~~~~~~~~~~~~~~ 144 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGA----DLKVVYILEKEKVIIRIWKEQK 144 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCC----ceeEEEEecccceeeeeeccCC
Confidence 4456666 489999999999999999975432110111111223445554333 3468889999998874443333
Q ss_pred cCCccCceEEEcCcEEEEEECCCCeEEEEEeecCee
Q 002016 223 SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 223 p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
+. .+.-|+...+.+++.. .+++.+.+++++++
T Consensus 145 ~~-~~sl~is~D~~~l~~a---s~~ik~~~~~~kev 176 (541)
T KOG4547|consen 145 PL-VSSLCISPDGKILLTA---SRQIKVLDIETKEV 176 (541)
T ss_pred Cc-cceEEEcCCCCEEEec---cceEEEEEccCceE
Confidence 32 2222333233344433 46899999999884
No 101
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=79.80 E-value=36 Score=39.26 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
+.+.+..++.+|+|.--|..||+.+=+.. .++-+....-..++..+.-+..+.+||.||+-+|+++|+.....
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~he 215 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHE 215 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeeccccc
Confidence 35668888899999999999999777633 44433332112222333324456799999999999999985443
No 102
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=79.34 E-value=1.3e+02 Score=34.98 Aligned_cols=191 Identities=9% Similarity=0.150 Sum_probs=103.8
Q ss_pred CCCEEEEEcCC-CEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEcc---CCEEEEEeCCCCcEeEEEeccCc
Q 002016 52 GRKRVVVSTEE-NVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD---GSTLRAWNLPDGQMVWESFLRGS 127 (981)
Q Consensus 52 ~~~~VyvaT~~-g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~---g~~V~A~da~tG~llWe~~~~~~ 127 (981)
.++++|+.+.+ +.+..+|.++=.+.=....... ..++.+...+..++|+.. .+.+..+|..++++.=+......
T Consensus 84 ~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~--P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~ 161 (381)
T COG3391 84 AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLG--PVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT 161 (381)
T ss_pred CCCeEEEecCCCCeEEEEcCcccceeeEeeeccC--CceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC
Confidence 46679999865 8899999544332222222211 112322234445555433 57999999999988766444321
Q ss_pred cccCCceeecccccccCCcEEEEEe--CCEEEEEECCCCcEeEEEeccCcc----eeeeEEEEeecCCeEEEEEecCCce
Q 002016 128 KHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAES----VEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 128 ~~s~~~~~v~~~~~~~~~~~V~V~~--~g~l~aLd~~tG~~~W~~~~~~~~----~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
.. ...+- ..+..+++.. ++.+..+| .++..+|+ ...... ..|..+....++..+|+..... ..
T Consensus 162 P~--~~a~~------p~g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~-~~ 230 (381)
T COG3391 162 PT--GVAVD------PDGNKVYVTNSDDNTVSVID-TSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS-GS 230 (381)
T ss_pred cc--eEEEC------CCCCeEEEEecCCCeEEEEe-CCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccC-CC
Confidence 11 11111 1244577764 89999999 55566665 222111 1244443234666788754432 22
Q ss_pred eEEEEEECCCCceeee-eeeeccCCccCceEEE-cCcEEEEEECCCCeEEEEEeecCe
Q 002016 202 FHAYQINAMNGELLNH-ETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 202 ~~v~aLd~~tG~~lw~-~~v~~p~~~~~~~~~v-g~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
..+..+|..+|...+. ..+... ...+ ..+. .+..++..+...+.+.+++..+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~-~~~~-v~~~p~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSG-APRG-VAVDPAGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred ceEEEEeCCCceEEEeccccccC-CCCc-eeECCCCCEEEEEecCCCeEEEEeCCCCc
Confidence 4689999999999877 322221 1111 1111 223333343445677777776655
No 103
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=78.54 E-value=1.4e+02 Score=34.79 Aligned_cols=155 Identities=15% Similarity=0.176 Sum_probs=91.7
Q ss_pred cCCCEEEEEcC---CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEE-ccCCEEEEEeCCCCcEeEEEeccC
Q 002016 51 TGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 51 ~~~~~VyvaT~---~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs-~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
.+++.+||+.. .+.+..+|..++++.=....... . .+..+...+..+++. ...+.+..+| .++..+|+ ....
T Consensus 125 ~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~-P-~~~a~~p~g~~vyv~~~~~~~v~vi~-~~~~~v~~-~~~~ 200 (381)
T COG3391 125 PDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNT-P-TGVAVDPDGNKVYVTNSDDNTVSVID-TSGNSVVR-GSVG 200 (381)
T ss_pred CCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCC-c-ceEEECCCCCeEEEEecCCCeEEEEe-CCCcceec-cccc
Confidence 35778999987 68999999999987665443321 1 122122334445544 3567999999 46777776 3221
Q ss_pred ccc---cCCceeecccccccCCcEEEEEe--C--CEEEEEECCCCcEeEE-EeccCcceeeeEEEEeecCCeEEEEEecC
Q 002016 127 SKH---SKPLLLVPTNLKVDKDSLILVSS--K--GCLHAVSSIDGEILWT-RDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (981)
Q Consensus 127 ~~~---s~~~~~v~~~~~~~~~~~V~V~~--~--g~l~aLd~~tG~~~W~-~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g 198 (981)
... ..+..+.- ...+..++|.. + +.+..+|..+|.+.|. ...... .+..+.....+..+|+.-..+
T Consensus 201 ~~~~~~~~P~~i~v----~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~--~~~~v~~~p~g~~~yv~~~~~ 274 (381)
T COG3391 201 SLVGVGTGPAGIAV----DPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG--APRGVAVDPAGKAAYVANSQG 274 (381)
T ss_pred cccccCCCCceEEE----CCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC--CCCceeECCCCCEEEEEecCC
Confidence 111 01111110 01244577752 3 6999999999999987 333332 122333234667777654443
Q ss_pred CceeEEEEEECCCCceeeee
Q 002016 199 SSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 199 ~~~~~v~aLd~~tG~~lw~~ 218 (981)
+ .+..+|..+.++.-..
T Consensus 275 ~---~V~vid~~~~~v~~~~ 291 (381)
T COG3391 275 G---TVSVIDGATDRVVKTG 291 (381)
T ss_pred C---eEEEEeCCCCceeeee
Confidence 3 5888898888777554
No 104
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=78.38 E-value=59 Score=40.16 Aligned_cols=151 Identities=10% Similarity=0.098 Sum_probs=83.5
Q ss_pred CCEEEEEcCC-------CEEEEEECCCCccceEEEcCCCc--ceeeeeeeecCeEEEEEccC------CEEEEEeCCCCc
Q 002016 53 RKRVVVSTEE-------NVIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDG------STLRAWNLPDGQ 117 (981)
Q Consensus 53 ~~~VyvaT~~-------g~L~ALd~~tG~ivWR~~l~~~~--~i~~l~~~~~~~vV~Vs~~g------~~V~A~da~tG~ 117 (981)
.+.+|+..+. ..+-++|++++ .|+...+-+. .-.+. +..++.++++||.+ ..+.-+|+.+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~m~~~r~~~~~-~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAPMPSPRCRVGV-AVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC--cEeecCCCCcccccccE-EEECCEEEEEccccCCCcccceEEEecCCCCc
Confidence 4556655432 46889999999 5876554432 11123 34566777777755 468889998888
Q ss_pred EeEEEeccCccccCCceeecccccccCCcEEEEEe--CC-----EEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCe
Q 002016 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KG-----CLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (981)
Q Consensus 118 llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~g-----~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~ 190 (981)
|.. +..-.. ..... +.+.-++.+|+.+ +| .+-++|+.+ -.|+...+.... ....-...-++.
T Consensus 361 --W~~-~a~M~~--~R~~~---~v~~l~g~iYavGG~dg~~~l~svE~YDp~~--~~W~~va~m~~~-r~~~gv~~~~g~ 429 (571)
T KOG4441|consen 361 --WTP-VAPMNT--KRSDF---GVAVLDGKLYAVGGFDGEKSLNSVECYDPVT--NKWTPVAPMLTR-RSGHGVAVLGGK 429 (571)
T ss_pred --eec-cCCccC--ccccc---eeEEECCEEEEEeccccccccccEEEecCCC--CcccccCCCCcc-eeeeEEEEECCE
Confidence 876 221111 11000 0011244455532 22 345555543 368876654331 112212357899
Q ss_pred EEEEEecCCce---eEEEEEECCCCceeeeee
Q 002016 191 IYVVGYAGSSQ---FHAYQINAMNGELLNHET 219 (981)
Q Consensus 191 Vyvvg~~g~~~---~~v~aLd~~tG~~lw~~~ 219 (981)
+|++|...+.. -.+-++|+.|++ |...
T Consensus 430 iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~ 459 (571)
T KOG4441|consen 430 LYIIGGGDGSSNCLNSVECYDPETNT--WTLI 459 (571)
T ss_pred EEEEcCcCCCccccceEEEEcCCCCc--eeec
Confidence 99988643222 457889998874 6653
No 105
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=77.54 E-value=50 Score=38.62 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=53.4
Q ss_pred CCEEEEEcCCCEEEEEECC---CCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCC-CCcEeEEEeccCcc
Q 002016 53 RKRVVVSTEENVIASLDLR---HGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFLRGSK 128 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~---tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~-tG~llWe~~~~~~~ 128 (981)
...+..++.++.|+-.|-+ .-...|++.-+-+. + .. -.......++|.++|.||.+|+. .|+.+|+.......
T Consensus 299 p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEk-v-~w-~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ 375 (463)
T KOG0270|consen 299 PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEK-V-AW-DPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE 375 (463)
T ss_pred ceEEEeccccceEEeeeccCccccCceEEeccceEE-E-Ee-cCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC
Confidence 3458888999999999988 56677886543220 1 11 12455677778888999999986 68999999988765
Q ss_pred c
Q 002016 129 H 129 (981)
Q Consensus 129 ~ 129 (981)
.
T Consensus 376 I 376 (463)
T KOG0270|consen 376 I 376 (463)
T ss_pred c
Confidence 4
No 106
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=77.38 E-value=38 Score=40.08 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=58.8
Q ss_pred EeEEEeccCcee-eeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCc-ceeeeee-eecC----eEEEEEc
Q 002016 31 MDWHQQYIGKVK-HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDI-ALGK----YVITLSS 103 (981)
Q Consensus 31 ~dW~~~~vG~~~-~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-~i~~l~~-~~~~----~vV~Vs~ 103 (981)
.||...+ |... .-...+-......|+|..+.+ |++|+. +|+++|...|+-.. ....+.. ...+ ..+.|++
T Consensus 231 ~dWs~nl-GE~~l~i~v~~~~~~~~~IvvLger~-Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t 307 (418)
T PF14727_consen 231 PDWSFNL-GEQALDIQVVRFSSSESDIVVLGERS-LFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGT 307 (418)
T ss_pred ceeEEEC-CceeEEEEEEEcCCCCceEEEEecce-EEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEe
Confidence 8999876 6543 211111111234577777775 999996 89999999997652 1111211 1111 2366677
Q ss_pred cCCEEEEEeCCCCcEeEEEeccCc
Q 002016 104 DGSTLRAWNLPDGQMVWESFLRGS 127 (981)
Q Consensus 104 ~g~~V~A~da~tG~llWe~~~~~~ 127 (981)
+.+.+.-+ .+.+++|..++...
T Consensus 308 ~t~~LlVy--~d~~L~WsA~l~~~ 329 (418)
T PF14727_consen 308 HTGTLLVY--EDTTLVWSAQLPHV 329 (418)
T ss_pred cCCeEEEE--eCCeEEEecCCCCC
Confidence 77899999 58999999998643
No 107
>PHA03098 kelch-like protein; Provisional
Probab=76.97 E-value=73 Score=38.66 Aligned_cols=123 Identities=9% Similarity=0.069 Sum_probs=63.5
Q ss_pred eecCeEEEEEccC------CEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeC-------CEEEEE
Q 002016 93 ALGKYVITLSSDG------STLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------GCLHAV 159 (981)
Q Consensus 93 ~~~~~vV~Vs~~g------~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~-------g~l~aL 159 (981)
..++.++++||.+ ..+..+|..+++ |+.- +.... +.. ....+.-++.+++.++ ..+..+
T Consensus 292 ~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~--W~~~-~~~~~--~R~---~~~~~~~~~~lyv~GG~~~~~~~~~v~~y 363 (534)
T PHA03098 292 VLNNVIYFIGGMNKNNLSVNSVVSYDTKTKS--WNKV-PELIY--PRK---NPGVTVFNNRIYVIGGIYNSISLNTVESW 363 (534)
T ss_pred EECCEEEEECCCcCCCCeeccEEEEeCCCCe--eeEC-CCCCc--ccc---cceEEEECCEEEEEeCCCCCEecceEEEE
Confidence 4577777777642 257889988764 7532 21110 000 0011122456776532 246778
Q ss_pred ECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecC--C-ceeEEEEEECCCCceeeeeeeeccCCccC
Q 002016 160 SSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG--S-SQFHAYQINAMNGELLNHETAAFSGGFVG 228 (981)
Q Consensus 160 d~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g--~-~~~~v~aLd~~tG~~lw~~~v~~p~~~~~ 228 (981)
|..++ .|+...+.+.-. .....+..++.+|++|... + ..-.+..+|+.++ .|+..-..|....+
T Consensus 364 d~~~~--~W~~~~~lp~~r-~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~--~W~~~~~~p~~r~~ 430 (534)
T PHA03098 364 KPGES--KWREEPPLIFPR-YNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN--KWSKGSPLPISHYG 430 (534)
T ss_pred cCCCC--ceeeCCCcCcCC-ccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC--eeeecCCCCccccC
Confidence 87765 587644322110 0111124678999987532 1 1124778898775 48775444544444
No 108
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=75.91 E-value=1.3e+02 Score=33.05 Aligned_cols=60 Identities=15% Similarity=0.296 Sum_probs=37.3
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP 114 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~ 114 (981)
+.-.|+++++|.+.--|.++ +.=.+.+.....+..+-+.-...-++++...|.+|.||..
T Consensus 95 grWMyTgseDgt~kIWdlR~--~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 95 GRWMYTGSEDGTVKIWDLRS--LSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred CeEEEecCCCceEEEEeccC--cccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 44599999999999989887 2222223222223322122345555657667899999984
No 109
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=75.79 E-value=1.8e+02 Score=34.63 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=94.8
Q ss_pred ecccCCCEEEEEcC---CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeE-EEe
Q 002016 48 TQKTGRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVW-ESF 123 (981)
Q Consensus 48 ~~~~~~~~VyvaT~---~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llW-e~~ 123 (981)
.|...+++||+.|+ -|.|++.|. +|+-+=|+.--.+--...+ -..|..+|+ +. +|.++.+|+++-++.= +..
T Consensus 230 ~PmIV~~RvYFlsD~eG~GnlYSvdl-dGkDlrrHTnFtdYY~R~~-nsDGkrIvF-q~-~GdIylydP~td~lekldI~ 305 (668)
T COG4946 230 SPMIVGERVYFLSDHEGVGNLYSVDL-DGKDLRRHTNFTDYYPRNA-NSDGKRIVF-QN-AGDIYLYDPETDSLEKLDIG 305 (668)
T ss_pred CceEEcceEEEEecccCccceEEecc-CCchhhhcCCchhcccccc-CCCCcEEEE-ec-CCcEEEeCCCcCcceeeecC
Confidence 35556889999986 478999997 6776665432111000011 124555666 54 4579999998876541 222
Q ss_pred ccCc---c---ccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEeccCcc-eeeeEEEEeecCCeEEEEEe
Q 002016 124 LRGS---K---HSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAES-VEVQQVIQLDESDQIYVVGY 196 (981)
Q Consensus 124 ~~~~---~---~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~~~-~~~~~vv~s~~~~~Vyvvg~ 196 (981)
++.. . ...+...++..++.. ++.+...+.|..+-.+.-.|-.+ +.+... ....+. ...++.+.+...
T Consensus 306 lpl~rk~k~~k~~~pskyledfa~~~-Gd~ia~VSRGkaFi~~~~~~~~i---qv~~~~~VrY~r~--~~~~e~~vigt~ 379 (668)
T COG4946 306 LPLDRKKKQPKFVNPSKYLEDFAVVN-GDYIALVSRGKAFIMRPWDGYSI---QVGKKGGVRYRRI--QVDPEGDVIGTN 379 (668)
T ss_pred CccccccccccccCHHHhhhhhccCC-CcEEEEEecCcEEEECCCCCeeE---EcCCCCceEEEEE--ccCCcceEEecc
Confidence 1111 0 001111121111222 33333347777777776555322 222111 111222 234444444444
Q ss_pred cCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeecCe
Q 002016 197 AGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 197 ~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
.|. .+..+|..+|+..--. .+-+.-..+-+--++..+++..++..|.++++.+|.
T Consensus 380 dgD---~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 380 DGD---KLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCc---eEEEEecCCceEEEee---CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCC
Confidence 454 4788899999854221 111111111111222333333356788888888887
No 110
>PLN02153 epithiospecifier protein
Probab=75.41 E-value=1.5e+02 Score=33.64 Aligned_cols=158 Identities=14% Similarity=0.162 Sum_probs=79.9
Q ss_pred CCCEEEEEcCC--------CEEEEEECCCCccceEEEcCCCc--ce--eeee-eeecCeEEEEEccC-----CEEEEEeC
Q 002016 52 GRKRVVVSTEE--------NVIASLDLRHGEIFWRHVLGIND--VV--DGID-IALGKYVITLSSDG-----STLRAWNL 113 (981)
Q Consensus 52 ~~~~VyvaT~~--------g~L~ALd~~tG~ivWR~~l~~~~--~i--~~l~-~~~~~~vV~Vs~~g-----~~V~A~da 113 (981)
.++.||+.... +.+..+|+.+. .|+..-.... .. .+.. ++.++.++++||.+ ..+..+|.
T Consensus 31 ~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 31 VGDKLYSFGGELKPNEHIDKDLYVFDFNTH--TWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred ECCEEEEECCccCCCCceeCcEEEEECCCC--EEEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEEC
Confidence 46788886542 46899999886 4986432211 11 1111 34577777777642 35888998
Q ss_pred CCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeC-------------CEEEEEECCCCcEeEEEeccCcce-ee
Q 002016 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK-------------GCLHAVSSIDGEILWTRDFAAESV-EV 179 (981)
Q Consensus 114 ~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~-------------g~l~aLd~~tG~~~W~~~~~~~~~-~~ 179 (981)
.+. .|+.-..-.....+.+.. .+..+..++.++|+++ ..+.++|.++. .|+.-...+.. .+
T Consensus 109 ~t~--~W~~~~~~~~~~~p~~R~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~~~~~~~~~ 183 (341)
T PLN02153 109 VKN--EWTFLTKLDEEGGPEART-FHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLPDPGENFEK 183 (341)
T ss_pred CCC--EEEEeccCCCCCCCCCce-eeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCCCCCCCCCC
Confidence 754 587532110000011111 1111123456777531 14778888765 58863322110 00
Q ss_pred e-EEEEeecCCeEEEEEec------CCc----eeEEEEEECCCCceeeee
Q 002016 180 Q-QVIQLDESDQIYVVGYA------GSS----QFHAYQINAMNGELLNHE 218 (981)
Q Consensus 180 ~-~vv~s~~~~~Vyvvg~~------g~~----~~~v~aLd~~tG~~lw~~ 218 (981)
+ ....+..++.+|+++-. |+. .-.+.++|+.+.+ |+.
T Consensus 184 r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~--W~~ 231 (341)
T PLN02153 184 RGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK--WTE 231 (341)
T ss_pred CCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCc--EEe
Confidence 0 01112357788886532 110 1247888987644 775
No 111
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=75.20 E-value=90 Score=38.60 Aligned_cols=150 Identities=11% Similarity=0.096 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCC-------EEEEEECCCCccceEEEcCCCc--ceeeeeeeecCeEEEEEccC-----CEEEEEeCCCCc
Q 002016 52 GRKRVVVSTEEN-------VIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDG-----STLRAWNLPDGQ 117 (981)
Q Consensus 52 ~~~~VyvaT~~g-------~L~ALd~~tG~ivWR~~l~~~~--~i~~l~~~~~~~vV~Vs~~g-----~~V~A~da~tG~ 117 (981)
-++.||+..+.+ .+...|+++++ |+..-+-.. .-.++ ++.++.+++|||.+ ..+--||+. .
T Consensus 331 ~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v-~~l~g~iYavGG~dg~~~l~svE~YDp~--~ 405 (571)
T KOG4441|consen 331 LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGV-AVLDGKLYAVGGFDGEKSLNSVECYDPV--T 405 (571)
T ss_pred ECCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCcccccee-EEECCEEEEEeccccccccccEEEecCC--C
Confidence 367888876544 57788999988 998443321 11133 34677788887754 236667764 3
Q ss_pred EeEEEeccCccccCCceeecccccccCCcEEEEEeC--------CEEEEEECCCCcEeEEEeccCcce-eeeEEEEeecC
Q 002016 118 MVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK--------GCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDES 188 (981)
Q Consensus 118 llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~--------g~l~aLd~~tG~~~W~~~~~~~~~-~~~~vv~s~~~ 188 (981)
-.|+.-.+-... ....+.+..++.+++.++ ..+.++|+.++ .|+...+.... .-..+ ..-+
T Consensus 406 ~~W~~va~m~~~------r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~~~R~~~g~--a~~~ 475 (571)
T KOG4441|consen 406 NKWTPVAPMLTR------RSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMNTRRSGFGV--AVLN 475 (571)
T ss_pred CcccccCCCCcc------eeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcccccccceE--EEEC
Confidence 457765432211 001111233566777531 46788888876 58876553321 11112 3578
Q ss_pred CeEEEEEecCCc--eeEEEEEECCCCceeeee
Q 002016 189 DQIYVVGYAGSS--QFHAYQINAMNGELLNHE 218 (981)
Q Consensus 189 ~~Vyvvg~~g~~--~~~v~aLd~~tG~~lw~~ 218 (981)
+.+|++|-..+. --.+.++|+.+-+ |..
T Consensus 476 ~~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~ 505 (571)
T KOG4441|consen 476 GKIYVVGGFDGTSALSSVERYDPETNQ--WTM 505 (571)
T ss_pred CEEEEECCccCCCccceEEEEcCCCCc--eeE
Confidence 899988754321 1247888987653 555
No 112
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.10 E-value=81 Score=33.78 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=59.0
Q ss_pred CCEEEEEeCCCCcEeEEEeccCc-cccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeE
Q 002016 105 GSTLRAWNLPDGQMVWESFLRGS-KHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQ 181 (981)
Q Consensus 105 g~~V~A~da~tG~llWe~~~~~~-~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~ 181 (981)
.+.+|-||..+|+..|+..+..+ ....+.. .-++.++.+ .+|.-+.+|+.+=+.+=+++-+.... .
T Consensus 67 ~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit--------~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW---g 135 (262)
T COG3823 67 FSKIRVSDLTTGQEIFSEKLAPDTVFGEGIT--------KLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW---G 135 (262)
T ss_pred cceeEEEeccCceEEEEeecCCcccccccee--------eccceEEEEEeccceeEEEChHHhhhhcccccCCcce---e
Confidence 47899999999999999999842 2212221 225577776 38888889988766655554443322 1
Q ss_pred EEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeec
Q 002016 182 VIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAF 222 (981)
Q Consensus 182 vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~ 222 (981)
+ ..++..+.. .+|.+ .++-.|++|=..+....+..
T Consensus 136 L--t~d~~~Lim--sdGsa--tL~frdP~tfa~~~~v~VT~ 170 (262)
T COG3823 136 L--TSDDKNLIM--SDGSA--TLQFRDPKTFAELDTVQVTD 170 (262)
T ss_pred e--ecCCcceEe--eCCce--EEEecCHHHhhhcceEEEEE
Confidence 1 122333322 23432 35666776655555554433
No 113
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=73.85 E-value=1.6e+02 Score=33.28 Aligned_cols=150 Identities=15% Similarity=0.319 Sum_probs=74.2
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccC--cc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG--SK 128 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~--~~ 128 (981)
.++.+++++..|.|+.= .+|-.-|+...... ..+.......++..|.|+..|.-+..|| .|+.-|+..-.. ..
T Consensus 113 ~~~~~~l~~~~G~iy~T--~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~~~~r~~~~r 188 (302)
T PF14870_consen 113 GDGSAELAGDRGAIYRT--TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQPHNRNSSRR 188 (302)
T ss_dssp ETTEEEEEETT--EEEE--SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-EEEE--SSS-
T ss_pred CCCcEEEEcCCCcEEEe--CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEec--CCCccceEEccCccce
Confidence 35567777777766554 57888999877544 2233332234556777888887888997 499999865432 11
Q ss_pred ccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEE--eecCCeEEEEEecCCceeEEE
Q 002016 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQ--LDESDQIYVVGYAGSSQFHAY 205 (981)
Q Consensus 129 ~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~--s~~~~~Vyvvg~~g~~~~~v~ 205 (981)
+ +.+.+. .++.+... .+|.++.-+..+...-|+.........-..+.+ -..++.++++|..|. ++
T Consensus 189 i-q~~gf~-------~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~----l~ 256 (302)
T PF14870_consen 189 I-QSMGFS-------PDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT----LL 256 (302)
T ss_dssp E-EEEEE--------TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-----EE
T ss_pred e-hhceec-------CCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc----EE
Confidence 2 222222 23445444 578888777566667888755332121122221 136788998887663 22
Q ss_pred EEECCCCceeeeee
Q 002016 206 QINAMNGELLNHET 219 (981)
Q Consensus 206 aLd~~tG~~lw~~~ 219 (981)
.. .+|-.-|++.
T Consensus 257 -~S-~DgGktW~~~ 268 (302)
T PF14870_consen 257 -VS-TDGGKTWQKD 268 (302)
T ss_dssp -EE-SSTTSS-EE-
T ss_pred -Ee-CCCCccceEC
Confidence 23 3556678874
No 114
>PRK00178 tolB translocation protein TolB; Provisional
Probab=73.67 E-value=1.9e+02 Score=33.92 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=73.0
Q ss_pred CCCEEEEEc-CC--CEEEEEECCCCccceEEEcCC-Ccceeeeee-eecCeEEEEEcc--CCEEEEEeCCCCcEeEEEec
Q 002016 52 GRKRVVVST-EE--NVIASLDLRHGEIFWRHVLGI-NDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 52 ~~~~VyvaT-~~--g~L~ALd~~tG~ivWR~~l~~-~~~i~~l~~-~~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~ 124 (981)
++++|++.+ ++ ..|+.+|..+|+.. .+.. .+....... +.++.+++.... ...++.+|..+|+..- +
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~~---~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~---l 282 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRRE---QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR---V 282 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCEE---EccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE---c
Confidence 455664443 32 47888999888742 2222 111111111 244555554332 2479999999887532 2
Q ss_pred cCcc-ccCCceeecccccccCCcEEEEEe----CCEEEEEECCCCcEe-EEEeccCcceeeeEEEEeecCCeEEEEEecC
Q 002016 125 RGSK-HSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEIL-WTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (981)
Q Consensus 125 ~~~~-~s~~~~~v~~~~~~~~~~~V~V~~----~g~l~aLd~~tG~~~-W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g 198 (981)
.... ......+.| + ++.+++.+ ...++.+|..+|+.. .+... ... .....+.+++.+++....+
T Consensus 283 t~~~~~~~~~~~sp-----D-g~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~--~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 283 TNHPAIDTEPFWGK-----D-GRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYN--ARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred ccCCCCcCCeEECC-----C-CCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCc--cceEECCCCCEEEEEEccC
Confidence 2111 101111111 2 33444432 347999999888753 22211 111 0111134566676655443
Q ss_pred CceeEEEEEECCCCce
Q 002016 199 SSQFHAYQINAMNGEL 214 (981)
Q Consensus 199 ~~~~~v~aLd~~tG~~ 214 (981)
+ ...++.+|+.+|+.
T Consensus 353 ~-~~~l~~~dl~tg~~ 367 (430)
T PRK00178 353 G-NFHVAAQDLQRGSV 367 (430)
T ss_pred C-ceEEEEEECCCCCE
Confidence 2 34688899999875
No 115
>PRK00178 tolB translocation protein TolB; Provisional
Probab=73.12 E-value=2e+02 Score=33.82 Aligned_cols=149 Identities=15% Similarity=0.192 Sum_probs=72.5
Q ss_pred ecCeEEEEEcc--CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee-C--CEEEEEECCCCcEe
Q 002016 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-K--GCLHAVSSIDGEIL 167 (981)
Q Consensus 94 ~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~-~--g~l~aLd~~tG~~~ 167 (981)
.++.+++++.. ...++.||..+|+..--....+.. ....+.| + ++.+++ .. + ..++.+|.++|+..
T Consensus 209 DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~--~~~~~Sp-----D-G~~la~~~~~~g~~~Iy~~d~~~~~~~ 280 (430)
T PRK00178 209 DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLN--GAPAWSP-----D-GSKLAFVLSKDGNPEIYVMDLASRQLS 280 (430)
T ss_pred CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCc--CCeEECC-----C-CCEEEEEEccCCCceEEEEECCCCCeE
Confidence 45667776633 357999999999764322222111 1111211 2 334443 32 3 37999999988753
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEE-EcCcEEEEEECCCC
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTRS 246 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~-vg~~~lv~~d~~~g 246 (981)
--........ ....+.++..+++.+..++ ...++.+|+.+|+... +.........+.+ ..++.+++.....+
T Consensus 281 ~lt~~~~~~~---~~~~spDg~~i~f~s~~~g-~~~iy~~d~~~g~~~~---lt~~~~~~~~~~~Spdg~~i~~~~~~~~ 353 (430)
T PRK00178 281 RVTNHPAIDT---EPFWGKDGRTLYFTSDRGG-KPQIYKVNVNGGRAER---VTFVGNYNARPRLSADGKTLVMVHRQDG 353 (430)
T ss_pred EcccCCCCcC---CeEECCCCCEEEEEECCCC-CceEEEEECCCCCEEE---eecCCCCccceEECCCCCEEEEEEccCC
Confidence 2111111111 1111345566666554332 2368888998887431 1111111111112 13445555543333
Q ss_pred --eEEEEEeecCe
Q 002016 247 --ILVTVSFKNRK 257 (981)
Q Consensus 247 --~L~v~~L~sg~ 257 (981)
.++..++.+|.
T Consensus 354 ~~~l~~~dl~tg~ 366 (430)
T PRK00178 354 NFHVAAQDLQRGS 366 (430)
T ss_pred ceEEEEEECCCCC
Confidence 47777777765
No 116
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=70.72 E-value=2e+02 Score=32.98 Aligned_cols=200 Identities=12% Similarity=0.145 Sum_probs=101.1
Q ss_pred cCCCEEEEEcCC---CEE--EEEECCCCccce--EEEcCCCcceeeeeeeecCeEEEEEcc-CCEEEEEeCC-CCcEeEE
Q 002016 51 TGRKRVVVSTEE---NVI--ASLDLRHGEIFW--RHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNLP-DGQMVWE 121 (981)
Q Consensus 51 ~~~~~VyvaT~~---g~L--~ALd~~tG~ivW--R~~l~~~~~i~~l~~~~~~~vV~Vs~~-g~~V~A~da~-tG~llWe 121 (981)
..++.+|++-+. |-+ +++|+++|+.-- |+.+..... -.+.+...+..|+++.. .+.|..+-.. +|.+ |.
T Consensus 49 ~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p-~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l-~~ 126 (346)
T COG2706 49 PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPP-CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL-QP 126 (346)
T ss_pred CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCC-eEEEECCCCCEEEEEEccCceEEEEEcccCCcc-cc
Confidence 346679998765 444 556777786533 222222211 11111234446666654 5788888774 4554 43
Q ss_pred E-ecc--Cccc---cCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEecc-CcceeeeEEEEeecCCeEE
Q 002016 122 S-FLR--GSKH---SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFA-AESVEVQQVIQLDESDQIY 192 (981)
Q Consensus 122 ~-~~~--~~~~---s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~-~~~~~~~~vv~s~~~~~Vy 192 (981)
. ... .+.. .+..+-+=.......++.|++- .-.+++.++.++|...=..... .+...|+.++--......|
T Consensus 127 ~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY 206 (346)
T COG2706 127 VVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAY 206 (346)
T ss_pred ceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEE
Confidence 3 221 1110 0000000000001124466663 5678888888899864332221 2222356665444666777
Q ss_pred EEEecCCceeEEEEEECCCCceeeeeee-eccCCccCc----eEEE--cCcEEEEEECCCCeEEEEEe
Q 002016 193 VVGYAGSSQFHAYQINAMNGELLNHETA-AFSGGFVGD----VALV--SSDTLVTLDTTRSILVTVSF 253 (981)
Q Consensus 193 vvg~~g~~~~~v~aLd~~tG~~lw~~~v-~~p~~~~~~----~~~v--g~~~lv~~d~~~g~L~v~~L 253 (981)
+++--. +.+.+..+|...|+.---.++ ..|.++.+. -+.+ .+..+++.++..+++.+.-+
T Consensus 207 ~v~EL~-stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 207 LVNELN-STVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred EEeccC-CEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 766433 346677778776776543333 457666661 1222 44577777766565544433
No 117
>PLN02193 nitrile-specifier protein
Probab=69.40 E-value=2.6e+02 Score=33.63 Aligned_cols=157 Identities=10% Similarity=0.136 Sum_probs=80.1
Q ss_pred CCCEEEEEcCC--------CEEEEEECCCCccceEEEcCCCc--ce--eeee-eeecCeEEEEEccC-----CEEEEEeC
Q 002016 52 GRKRVVVSTEE--------NVIASLDLRHGEIFWRHVLGIND--VV--DGID-IALGKYVITLSSDG-----STLRAWNL 113 (981)
Q Consensus 52 ~~~~VyvaT~~--------g~L~ALd~~tG~ivWR~~l~~~~--~i--~~l~-~~~~~~vV~Vs~~g-----~~V~A~da 113 (981)
.++.||+.... +.+.++|+++. .|+..-.... .. .+.. +..++.++++||.+ +.++.+|+
T Consensus 174 ~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~--~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~ 251 (470)
T PLN02193 174 VGNKIYSFGGEFTPNQPIDKHLYVFDLETR--TWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDT 251 (470)
T ss_pred ECCEEEEECCcCCCCCCeeCcEEEEECCCC--EEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEEC
Confidence 36778886553 35889999886 4986322111 00 1111 23566666667642 46889998
Q ss_pred CCCcEeEEEeccCccccCCceeecccccccCCcEEEEEe--C-----CEEEEEECCCCcEeEEEeccCcce-eee-EEEE
Q 002016 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K-----GCLHAVSSIDGEILWTRDFAAESV-EVQ-QVIQ 184 (981)
Q Consensus 114 ~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~-----g~l~aLd~~tG~~~W~~~~~~~~~-~~~-~vv~ 184 (981)
.+. .|+.-...+.. +.+.. .+..+..++.++++. + ..+.++|..+. .|+.-...... .++ ....
T Consensus 252 ~t~--~W~~l~~~~~~--P~~R~-~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~~~~R~~~~~ 324 (470)
T PLN02193 252 TTN--EWKLLTPVEEG--PTPRS-FHSMAADEENVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDSFSIRGGAGL 324 (470)
T ss_pred CCC--EEEEcCcCCCC--CCCcc-ceEEEEECCEEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCCCCCCCCcEE
Confidence 865 58763321110 00100 011112245566653 1 24778888765 58764321110 000 0000
Q ss_pred eecCCeEEEEEec-CCceeEEEEEECCCCceeeeee
Q 002016 185 LDESDQIYVVGYA-GSSQFHAYQINAMNGELLNHET 219 (981)
Q Consensus 185 s~~~~~Vyvvg~~-g~~~~~v~aLd~~tG~~lw~~~ 219 (981)
...++.+|+++-. |...-.+.++|+.+.+ |+..
T Consensus 325 ~~~~gkiyviGG~~g~~~~dv~~yD~~t~~--W~~~ 358 (470)
T PLN02193 325 EVVQGKVWVVYGFNGCEVDDVHYYDPVQDK--WTQV 358 (470)
T ss_pred EEECCcEEEEECCCCCccCceEEEECCCCE--EEEe
Confidence 2346778877643 2111348889998764 8764
No 118
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=69.12 E-value=2.2e+02 Score=32.87 Aligned_cols=149 Identities=15% Similarity=0.043 Sum_probs=71.8
Q ss_pred cCCCEEEEEcCC---CEEEEEECCCCccceEEEcCCCcceeeeee-eecCeEEEEEcc--CCEEEEEeCCCCcEeEEEec
Q 002016 51 TGRKRVVVSTEE---NVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSD--GSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 51 ~~~~~VyvaT~~---g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~-~~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~ 124 (981)
.+++.+++.+.. ..|+.+|.++|+..--...... ...... +.++.+++.... ...++.||..+|... .+
T Consensus 199 pdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~--~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~---~l 273 (417)
T TIGR02800 199 PDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM--NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT---RL 273 (417)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCC--ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE---EC
Confidence 345556555433 4799999999975332222211 111111 234455554432 246999999888643 22
Q ss_pred cCc-cccCCceeecccccccCCcEEEEEe----CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCC
Q 002016 125 RGS-KHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (981)
Q Consensus 125 ~~~-~~s~~~~~v~~~~~~~~~~~V~V~~----~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~ 199 (981)
... .......+.+ + +..+++.. ...++.+|..+|+..--.... ... .....+..+..+++.+..+
T Consensus 274 ~~~~~~~~~~~~s~-----d-g~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~-~~~--~~~~~spdg~~i~~~~~~~- 343 (417)
T TIGR02800 274 TNGPGIDTEPSWSP-----D-GKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRG-GYN--ASPSWSPDGDLIAFVHREG- 343 (417)
T ss_pred CCCCCCCCCEEECC-----C-CCEEEEEECCCCCceEEEEECCCCCEEEeecCC-CCc--cCeEECCCCCEEEEEEccC-
Confidence 111 1101111111 2 33444432 237999998888743211111 111 1111133455555544333
Q ss_pred ceeEEEEEECCCCce
Q 002016 200 SQFHAYQINAMNGEL 214 (981)
Q Consensus 200 ~~~~v~aLd~~tG~~ 214 (981)
...+++.+|+.+|..
T Consensus 344 ~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 344 GGFNIAVMDLDGGGE 358 (417)
T ss_pred CceEEEEEeCCCCCe
Confidence 235788899988754
No 119
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=69.05 E-value=1.8e+02 Score=34.08 Aligned_cols=70 Identities=16% Similarity=0.168 Sum_probs=35.9
Q ss_pred CCEEEEEcC---CCEEEEEECCCCccceEEEcCCCc--ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEecc
Q 002016 53 RKRVVVSTE---ENVIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 53 ~~~VyvaT~---~g~L~ALd~~tG~ivWR~~l~~~~--~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~ 125 (981)
+++++++++ ...++.||++||++. |-.+.++ ...+.-.+.+..++++.. +..|+++|.+|++..==+.++
T Consensus 47 G~kllF~s~~dg~~nly~lDL~t~~i~--QLTdg~g~~~~g~~~s~~~~~~~Yv~~-~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 47 GRKLLFASDFDGNRNLYLLDLATGEIT--QLTDGPGDNTFGGFLSPDDRALYYVKN-GRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp S-EEEEEE-TTSS-EEEEEETTT-EEE--E---SS-B-TTT-EE-TTSSEEEEEET-TTEEEEEETTT--EEEEEE--
T ss_pred CCEEEEEeccCCCcceEEEEcccCEEE--ECccCCCCCccceEEecCCCeEEEEEC-CCeEEEEECCcCcEEEEEECC
Confidence 445555554 358999999999873 3333221 222221234556677765 358999999999875334443
No 120
>PLN02193 nitrile-specifier protein
Probab=68.87 E-value=2.1e+02 Score=34.44 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=78.9
Q ss_pred CCCEEEEEcCC------CEEEEEECCCCccceEEEcCCC---cceeeee-eeecCeEEEEEccC-----CEEEEEeCCCC
Q 002016 52 GRKRVVVSTEE------NVIASLDLRHGEIFWRHVLGIN---DVVDGID-IALGKYVITLSSDG-----STLRAWNLPDG 116 (981)
Q Consensus 52 ~~~~VyvaT~~------g~L~ALd~~tG~ivWR~~l~~~---~~i~~l~-~~~~~~vV~Vs~~g-----~~V~A~da~tG 116 (981)
.++.+|+.... +.+.++|+++. .|++.-... ..-.... +..++.++++||.+ ..+..+|+.+.
T Consensus 227 ~~~~lYvfGG~~~~~~~ndv~~yD~~t~--~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~ 304 (470)
T PLN02193 227 IGSTLYVFGGRDASRQYNGFYSFDTTTN--EWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK 304 (470)
T ss_pred ECCEEEEECCCCCCCCCccEEEEECCCC--EEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC
Confidence 36778887653 57999999986 599754321 1111111 23456666667642 35788998765
Q ss_pred cEeEEEeccCccccCCceeecccccccCCcEEEEEe--C----CEEEEEECCCCcEeEEEeccCcce-eee-EEEEeecC
Q 002016 117 QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--K----GCLHAVSSIDGEILWTRDFAAESV-EVQ-QVIQLDES 188 (981)
Q Consensus 117 ~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~----g~l~aLd~~tG~~~W~~~~~~~~~-~~~-~vv~s~~~ 188 (981)
.|+.-...... ..+ ......+..++.+++.. + ..++.+|.++. .|+...+.+.. .++ ...-+..+
T Consensus 305 --~W~~~~~~~~~--~~~-R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~--~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 305 --KWFHCSTPGDS--FSI-RGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD--KWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred --EEEeCCCCCCC--CCC-CCCcEEEEECCcEEEEECCCCCccCceEEEECCCC--EEEEeccCCCCCCCcceeEEEEEC
Confidence 58753221111 000 00000011134466542 2 46889998876 48865432111 011 11112356
Q ss_pred CeEEEEEecCC-----------ceeEEEEEECCCCceeeee
Q 002016 189 DQIYVVGYAGS-----------SQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 189 ~~Vyvvg~~g~-----------~~~~v~aLd~~tG~~lw~~ 218 (981)
+.+|+.|-... ..-.+.+||+.+. .|+.
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~--~W~~ 416 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETL--QWER 416 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcCcC--EEEE
Confidence 78887764310 0013677777654 3654
No 121
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=67.82 E-value=1.9e+02 Score=34.67 Aligned_cols=144 Identities=19% Similarity=0.311 Sum_probs=77.5
Q ss_pred CEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCc
Q 002016 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (981)
Q Consensus 54 ~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~ 133 (981)
+.+|++|..|.|--=+..+|--.=- +...+..-++.....+..+.-++.++.|+.|| +-++.|...+..+.. .+
T Consensus 340 ~di~vGTtrN~iL~Gt~~~~f~~~v--~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~--~~ 413 (626)
T KOG2106|consen 340 GDILVGTTRNFILQGTLENGFTLTV--QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAE--CA 413 (626)
T ss_pred CcEEEeeccceEEEeeecCCceEEE--EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEecCcee--Ee
Confidence 3399999888775444444311100 01111111332223344444466678999999 889999999877643 12
Q ss_pred eeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCC
Q 002016 134 LLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNG 212 (981)
Q Consensus 134 ~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG 212 (981)
.+-| .+.|.+. ..|+...+|.++ +.+=+.......+ .++.-.-++..+++|.+.. ++.++-+|. +|
T Consensus 414 ~fhp-------sg~va~Gt~~G~w~V~d~e~-~~lv~~~~d~~~l---s~v~ysp~G~~lAvgs~d~-~iyiy~Vs~-~g 480 (626)
T KOG2106|consen 414 DFHP-------SGVVAVGTATGRWFVLDTET-QDLVTIHTDNEQL---SVVRYSPDGAFLAVGSHDN-HIYIYRVSA-NG 480 (626)
T ss_pred eccC-------cceEEEeeccceEEEEeccc-ceeEEEEecCCce---EEEEEcCCCCEEEEecCCC-eEEEEEECC-CC
Confidence 2221 2345554 589999999999 4443433333322 3332123444555555443 456666663 55
Q ss_pred ceee
Q 002016 213 ELLN 216 (981)
Q Consensus 213 ~~lw 216 (981)
+..-
T Consensus 481 ~~y~ 484 (626)
T KOG2106|consen 481 RKYS 484 (626)
T ss_pred cEEE
Confidence 5543
No 122
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=67.71 E-value=2.4e+02 Score=32.66 Aligned_cols=51 Identities=8% Similarity=0.038 Sum_probs=28.5
Q ss_pred CCCEEEEEcCC------------CEEEEEECCCCccceEEEcCC-Ccceee-eeee-ecCeEEEEEcc
Q 002016 52 GRKRVVVSTEE------------NVIASLDLRHGEIFWRHVLGI-NDVVDG-IDIA-LGKYVITLSSD 104 (981)
Q Consensus 52 ~~~~VyvaT~~------------g~L~ALd~~tG~ivWR~~l~~-~~~i~~-l~~~-~~~~vV~Vs~~ 104 (981)
-++.||+.... +.+.++|+.+. .|+..-.. +....+ ..++ .++.++++||.
T Consensus 83 ~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n--~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~ 148 (376)
T PRK14131 83 IDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTN--SWQKLDTRSPVGLAGHVAVSLHNGKAYITGGV 148 (376)
T ss_pred ECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCC--EEEeCCCCCCCcccceEEEEeeCCEEEEECCC
Confidence 36778887643 34788898876 49885421 111111 1122 45566666764
No 123
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=67.45 E-value=2.1e+02 Score=31.97 Aligned_cols=194 Identities=9% Similarity=0.032 Sum_probs=106.3
Q ss_pred CCEEEEEcCCCEEEEEECCCCcc-ceEEEcCCCc-ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcE-eEEEeccCccc
Q 002016 53 RKRVVVSTEENVIASLDLRHGEI-FWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM-VWESFLRGSKH 129 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~i-vWR~~l~~~~-~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~l-lWe~~~~~~~~ 129 (981)
++...+.+..+.|..||+++++. .|...++... ..... +....+.+-.++..|.-=-+|+.++.+ +|........
T Consensus 114 dg~~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~-vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gp- 191 (353)
T COG4257 114 DGSAWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETA-VFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQGGGP- 191 (353)
T ss_pred CCCeeEecCcceeEEecCcccceEEeecccccCCCcccce-eeCCCccEEEeeccccceecCcccCceeeeccCCCCCC-
Confidence 44566666666999999998874 3443333321 12222 234445443333222333578887755 4555533222
Q ss_pred cCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcce-eeeEEEEeecCCeEEEEEecCCceeEEEE
Q 002016 130 SKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESV-EVQQVIQLDESDQIYVVGYAGSSQFHAYQ 206 (981)
Q Consensus 130 s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~-~~~~vv~s~~~~~Vyvvg~~g~~~~~v~a 206 (981)
.+++.. -++-|.+. .+..+.++|..+|... ....+.+-. ..+++ .+...+.+.+. -+|. ..+..
T Consensus 192 -yGi~at-------pdGsvwyaslagnaiaridp~~~~ae-v~p~P~~~~~gsRri-wsdpig~~wit-twg~--g~l~r 258 (353)
T COG4257 192 -YGICAT-------PDGSVWYASLAGNAIARIDPFAGHAE-VVPQPNALKAGSRRI-WSDPIGRAWIT-TWGT--GSLHR 258 (353)
T ss_pred -cceEEC-------CCCcEEEEeccccceEEcccccCCcc-eecCCCccccccccc-ccCccCcEEEe-ccCC--ceeeE
Confidence 233333 24557764 6889999999999421 111111100 01112 13355667764 3432 25899
Q ss_pred EECCCCceeeeeeeeccC-CccCceEEEcCcEEEEE-ECCCCeEEEEEeecCeeeEEEEeec
Q 002016 207 INAMNGELLNHETAAFSG-GFVGDVALVSSDTLVTL-DTTRSILVTVSFKNRKIAFQETHLS 266 (981)
Q Consensus 207 Ld~~tG~~lw~~~v~~p~-~~~~~~~~vg~~~lv~~-d~~~g~L~v~~L~sg~~~~~~~~l~ 266 (981)
+|+.+-. |+.= ..|. ......+.|.+.-.||+ |.+.+.++..|-++.+ +..+++.
T Consensus 259 fdPs~~s--W~ey-pLPgs~arpys~rVD~~grVW~sea~agai~rfdpeta~--ftv~p~p 315 (353)
T COG4257 259 FDPSVTS--WIEY-PLPGSKARPYSMRVDRHGRVWLSEADAGAIGRFDPETAR--FTVLPIP 315 (353)
T ss_pred eCccccc--ceee-eCCCCCCCcceeeeccCCcEEeeccccCceeecCcccce--EEEecCC
Confidence 9998765 6431 2222 22234556766666776 7777888888887766 6777764
No 124
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=66.72 E-value=2.2e+02 Score=31.95 Aligned_cols=151 Identities=13% Similarity=0.150 Sum_probs=92.1
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeee-cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcccc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS 130 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~-~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s 130 (981)
+++.|+++|.+..-+--|.++|+..=.+.=...+ +-++..+- ...+++-++.++..+.||...|.-+=.+.......
T Consensus 155 dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gD-V~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDI- 232 (343)
T KOG0286|consen 155 DDNHILTGSGDMTCALWDIETGQQTQVFHGHTGD-VMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDI- 232 (343)
T ss_pred CCCceEecCCCceEEEEEcccceEEEEecCCccc-EEEEecCCCCCCeEEecccccceeeeeccCcceeEeeccccccc-
Confidence 4778999999999999999999865443311222 22232222 34454435667899999999998877777665444
Q ss_pred CCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEE
Q 002016 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (981)
Q Consensus 131 ~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd 208 (981)
.+..+.| ++.-|+. .|+....+|...+..+=.|..+......-.+--+ ..|.+...|+.. .....-|
T Consensus 233 Nsv~ffP-------~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS-~SGRlLfagy~d---~~c~vWD 301 (343)
T KOG0286|consen 233 NSVRFFP-------SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFS-KSGRLLFAGYDD---FTCNVWD 301 (343)
T ss_pred ceEEEcc-------CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEc-ccccEEEeeecC---CceeEee
Confidence 4444553 2334553 4889999999999888887755433211122222 334444445543 2356666
Q ss_pred CCCCcee
Q 002016 209 AMNGELL 215 (981)
Q Consensus 209 ~~tG~~l 215 (981)
.-.|++.
T Consensus 302 tlk~e~v 308 (343)
T KOG0286|consen 302 TLKGERV 308 (343)
T ss_pred ccccceE
Confidence 6655554
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=65.74 E-value=1.5e+02 Score=37.91 Aligned_cols=119 Identities=12% Similarity=0.060 Sum_probs=72.1
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcccc-
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHS- 130 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s- 130 (981)
++..+..|+++-.|-.+|..|+...=...= -...+.++...-.+..++++..+|+|+-||..+|.+.-....-.+...
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~ 185 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-HDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEF 185 (933)
T ss_pred CCcEEEeecCceeEEEEeccccchheeecc-cCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccc
Confidence 455788899999999999999876443211 111233332223455677676678999999999998766554322210
Q ss_pred --CCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEecc
Q 002016 131 --KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 131 --~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
......+.-. .+++...+. .++.|..++..+++.+-..+..
T Consensus 186 ~~s~i~~~~aW~--Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~ 229 (933)
T KOG1274|consen 186 ILSRICTRLAWH--PKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK 229 (933)
T ss_pred cccceeeeeeec--CCCCeEEeeccCCeEEEEccCCceeheeeccc
Confidence 0001111000 123444554 6899999999888887777554
No 126
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=65.01 E-value=3.2e+02 Score=33.20 Aligned_cols=116 Identities=13% Similarity=-0.005 Sum_probs=79.2
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
...+..++..|.|-..+...|++-|+...+... .+....-...-+.++=++.+.++--|+..+++..=.+....+.. .
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~-~ 148 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLV-S 148 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCcc-c
Confidence 445888999999999999999999998754432 12111001122344433445699999999999988887776544 3
Q ss_pred CceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEeccCcc
Q 002016 132 PLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAAES 176 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~~~ 176 (981)
+..+. .|+...+...+.+-.+|.++++++=++..-.+.
T Consensus 149 sl~is-------~D~~~l~~as~~ik~~~~~~kevv~~ftgh~s~ 186 (541)
T KOG4547|consen 149 SLCIS-------PDGKILLTASRQIKVLDIETKEVVITFTGHGSP 186 (541)
T ss_pred eEEEc-------CCCCEEEeccceEEEEEccCceEEEEecCCCcc
Confidence 33332 234456667889999999999999888765443
No 127
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=64.37 E-value=2.7e+02 Score=32.10 Aligned_cols=110 Identities=13% Similarity=0.137 Sum_probs=63.1
Q ss_pred EEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCce
Q 002016 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLL 134 (981)
Q Consensus 55 ~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~ 134 (981)
.+|-+.+++.|-|-|+..-+++=.+-=-- ..+.++...-..++++-++.+..+|.||..+-..+--.......+ ....
T Consensus 207 YlFs~gedk~VKCwDLe~nkvIR~YhGHl-S~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V-~~V~ 284 (460)
T KOG0285|consen 207 YLFSAGEDKQVKCWDLEYNKVIRHYHGHL-SGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPV-ASVM 284 (460)
T ss_pred eEEEecCCCeeEEEechhhhhHHHhcccc-ceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcc-eeEE
Confidence 48888889999999987766543321000 012233111234566656778899999998777666555443222 1111
Q ss_pred eecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEec
Q 002016 135 LVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF 172 (981)
Q Consensus 135 ~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~ 172 (981)
.- ..+..|+-. .|+.+.-.|...|+..=+...
T Consensus 285 ~~------~~dpqvit~S~D~tvrlWDl~agkt~~tlt~ 317 (460)
T KOG0285|consen 285 CQ------PTDPQVITGSHDSTVRLWDLRAGKTMITLTH 317 (460)
T ss_pred ee------cCCCceEEecCCceEEEeeeccCceeEeeec
Confidence 11 114445554 488888888888876655433
No 128
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=63.98 E-value=3e+02 Score=32.47 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=66.3
Q ss_pred cccccccEeEEEeccCceeee--eeeeccc---CCCEEEEEcCCCEEEEEECCCCccceEEEcCCC----c---ceeeee
Q 002016 24 YEDQVGLMDWHQQYIGKVKHA--VFHTQKT---GRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN----D---VVDGID 91 (981)
Q Consensus 24 yedqvG~~dW~~~~vG~~~~~--~f~~~~~---~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~----~---~i~~l~ 91 (981)
.+++.|+ -|++.. .|..+ .+..... +.++-++..+.|+|..= .||-.-|+...... + ....+.
T Consensus 69 ~~~d~G~-~W~q~~--~p~~~~~~L~~V~F~~~d~~~GwAVG~~G~IL~T--~DGG~tW~~~~~~~~~~~~~~~~l~~v~ 143 (398)
T PLN00033 69 DAAEQSS-EWEQVD--LPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLET--KDGGKTWVPRSIPSAEDEDFNYRFNSIS 143 (398)
T ss_pred ccccCCC-ccEEee--cCCCCCCceEEEEeccCCCCEEEEEcCCCEEEEE--cCCCCCceECccCcccccccccceeeeE
Confidence 3333444 599876 33322 2222211 35567887888876554 58999999854211 1 112221
Q ss_pred eeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCc-EEEEEeCCEEEEEECCCCcEeEEE
Q 002016 92 IALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDS-LILVSSKGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 92 ~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~-~V~V~~~g~l~aLd~~tG~~~W~~ 170 (981)
..++..+++|.. -+.+-..||-.-|+........+.....+. ...++ ..++...|.++.- .+|-.-|+.
T Consensus 144 -f~~~~g~~vG~~---G~il~T~DgG~tW~~~~~~~~~p~~~~~i~----~~~~~~~~ivg~~G~v~~S--~D~G~tW~~ 213 (398)
T PLN00033 144 -FKGKEGWIIGKP---AILLHTSDGGETWERIPLSPKLPGEPVLIK----ATGPKSAEMVTDEGAIYVT--SNAGRNWKA 213 (398)
T ss_pred -EECCEEEEEcCc---eEEEEEcCCCCCceECccccCCCCCceEEE----EECCCceEEEeccceEEEE--CCCCCCceE
Confidence 134444444433 355666799999987543221111111110 11122 2333345654444 577788986
Q ss_pred e
Q 002016 171 D 171 (981)
Q Consensus 171 ~ 171 (981)
.
T Consensus 214 ~ 214 (398)
T PLN00033 214 A 214 (398)
T ss_pred c
Confidence 4
No 129
>PLN02153 epithiospecifier protein
Probab=63.27 E-value=2.7e+02 Score=31.65 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=77.2
Q ss_pred CCCEEEEEcCC------CEEEEEECCCCccceEEEcCC-----Cc-ceeeeeeeecCeEEEEEccC-----------CEE
Q 002016 52 GRKRVVVSTEE------NVIASLDLRHGEIFWRHVLGI-----ND-VVDGIDIALGKYVITLSSDG-----------STL 108 (981)
Q Consensus 52 ~~~~VyvaT~~------g~L~ALd~~tG~ivWR~~l~~-----~~-~i~~l~~~~~~~vV~Vs~~g-----------~~V 108 (981)
-++.||+-... +.+..+|+++. .|+..-.. +. ......+..++.++++||.. ..+
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKN--EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCC--EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 36778877653 47899999876 59864221 10 01111123455666666632 257
Q ss_pred EEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeC---------------CEEEEEECCCCcEeEEEecc
Q 002016 109 RAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSK---------------GCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 109 ~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~---------------g~l~aLd~~tG~~~W~~~~~ 173 (981)
..+|+++. .|+.-...... .........+.-++.+++..+ ..+.++|..+. .|+.-..
T Consensus 162 ~~yd~~~~--~W~~l~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~--~W~~~~~ 234 (341)
T PLN02153 162 EAYNIADG--KWVQLPDPGEN---FEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG--KWTEVET 234 (341)
T ss_pred EEEECCCC--eEeeCCCCCCC---CCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCC--cEEeccc
Confidence 88998766 58853221100 000000001112445666421 35788887754 4886432
Q ss_pred Ccce-eee-EEEEeecCCeEEEEEecC---------C--ceeEEEEEECCCCceeeee
Q 002016 174 AESV-EVQ-QVIQLDESDQIYVVGYAG---------S--SQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 174 ~~~~-~~~-~vv~s~~~~~Vyvvg~~g---------~--~~~~v~aLd~~tG~~lw~~ 218 (981)
.+.. .++ ...-+..++.+|+.|-.. . ..-.++++|+.+. .|+.
T Consensus 235 ~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~--~W~~ 290 (341)
T PLN02153 235 TGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL--VWEK 290 (341)
T ss_pred cCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCcc--EEEe
Confidence 1111 000 111123568888876531 0 0115788887644 5764
No 130
>PRK13684 Ycf48-like protein; Provisional
Probab=62.74 E-value=2.8e+02 Score=31.69 Aligned_cols=179 Identities=15% Similarity=0.228 Sum_probs=85.7
Q ss_pred cccccccccEeEEEeccCc--eeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCeE
Q 002016 22 SLYEDQVGLMDWHQQYIGK--VKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYV 98 (981)
Q Consensus 22 AlyedqvG~~dW~~~~vG~--~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~~l~~~~~~~v 98 (981)
.+|..+-|-..|+....+. +.+. +.--...++.+++++..|.|+.-+ +|-.-|+...... ..+..+....++..
T Consensus 110 ~i~~S~DgG~tW~~~~~~~~~~~~~-~~i~~~~~~~~~~~g~~G~i~~S~--DgG~tW~~~~~~~~g~~~~i~~~~~g~~ 186 (334)
T PRK13684 110 LLLHTTDGGKNWTRIPLSEKLPGSP-YLITALGPGTAEMATNVGAIYRTT--DGGKNWEALVEDAAGVVRNLRRSPDGKY 186 (334)
T ss_pred eEEEECCCCCCCeEccCCcCCCCCc-eEEEEECCCcceeeeccceEEEEC--CCCCCceeCcCCCcceEEEEEECCCCeE
Confidence 4666555666788754331 1111 111112345577778887665553 6778899754332 22223311223344
Q ss_pred EEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEeccC-c--
Q 002016 99 ITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRDFAA-E-- 175 (981)
Q Consensus 99 V~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~~~~-~-- 175 (981)
++++..| .++.- ..+|..-|+....... .....+. ....+..+++..+|.+ .+...+|-.-|+..... .
T Consensus 187 v~~g~~G-~i~~s-~~~gg~tW~~~~~~~~--~~l~~i~---~~~~g~~~~vg~~G~~-~~~s~d~G~sW~~~~~~~~~~ 258 (334)
T PRK13684 187 VAVSSRG-NFYST-WEPGQTAWTPHQRNSS--RRLQSMG---FQPDGNLWMLARGGQI-RFNDPDDLESWSKPIIPEITN 258 (334)
T ss_pred EEEeCCc-eEEEE-cCCCCCeEEEeeCCCc--ccceeee---EcCCCCEEEEecCCEE-EEccCCCCCccccccCCcccc
Confidence 5545544 44432 2467788976533211 1111110 0122333444455654 35446677789853221 1
Q ss_pred ceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 176 SVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 176 ~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
......+. ...++.+++++..|. ++ .. .+|-.-|+.
T Consensus 259 ~~~l~~v~-~~~~~~~~~~G~~G~----v~-~S-~d~G~tW~~ 294 (334)
T PRK13684 259 GYGYLDLA-YRTPGEIWAGGGNGT----LL-VS-KDGGKTWEK 294 (334)
T ss_pred ccceeeEE-EcCCCCEEEEcCCCe----EE-Ee-CCCCCCCeE
Confidence 11122222 123667888777662 22 23 355567876
No 131
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=62.54 E-value=26 Score=44.17 Aligned_cols=109 Identities=17% Similarity=0.249 Sum_probs=64.9
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
.++.+|.++.++..+-+|++||+..|......+ +..+ +..+..-++| .-.|..+=...|......-.. .
T Consensus 106 sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~--~~~~-v~~grt~ytv-------~m~d~~~~~~~wn~t~~dy~a-~ 174 (903)
T KOG1027|consen 106 SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEP--IKQL-VYLGRTNYTV-------TMYDKNVRGKTWNTTFGDYSA-Q 174 (903)
T ss_pred CCCeEEecccccceEEecCCccceeEEEecCCc--chhh-eecccceeEE-------ecccCcccCceeeccccchhc-c
Confidence 577899999999999999999999999887664 3222 1223222222 222333333445544432211 0
Q ss_pred CceeecccccccCCcEEEE--EeCCEEEEEECCCCcEeEEEeccCcce
Q 002016 132 PLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEILWTRDFAAESV 177 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V--~~~g~l~aLd~~tG~~~W~~~~~~~~~ 177 (981)
...-+ .+.....+ .++|-+.-+|.++|+.+|..+...+..
T Consensus 175 ~~~~~------~~~~~~~~~~~~~g~i~t~D~~~g~~~~~q~~~spvv 216 (903)
T KOG1027|consen 175 YPSGV------RGEKMSHFHSLGNGYIVTVDSESGEKLWLQDLLSPVV 216 (903)
T ss_pred CCCcc------CCceeEEEeecCCccEEeccCcccceeeccccCCceE
Confidence 00000 11222222 257888889999999999988776543
No 132
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=62.49 E-value=64 Score=38.14 Aligned_cols=142 Identities=11% Similarity=0.113 Sum_probs=84.5
Q ss_pred eEEEEE-ccCCEEEEEeCCC-CcEeEEEeccCccccCCceeecccccccCCcEEEE--EeCCEEEEEECCCCcEeEEEec
Q 002016 97 YVITLS-SDGSTLRAWNLPD-GQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV--SSKGCLHAVSSIDGEILWTRDF 172 (981)
Q Consensus 97 ~vV~Vs-~~g~~V~A~da~t-G~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V--~~~g~l~aLd~~tG~~~W~~~~ 172 (981)
+.++++ +-++.|..||.-+ |+.+=.+......+ .++..- .++.=+. ..|+.+.-.|.+||+++=++..
T Consensus 227 ~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~V-rd~~~s-------~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~ 298 (503)
T KOG0282|consen 227 GHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPV-RDASFN-------NCGTSFLSASFDRFLKLWDTETGQVLSRFHL 298 (503)
T ss_pred eeEEEecCCCceEEEEEEecCcceehhhhcchhhh-hhhhcc-------ccCCeeeeeecceeeeeeccccceEEEEEec
Confidence 344444 4578999999886 88887777665544 233221 2232233 2599999999999999998877
Q ss_pred cCcceeeeEEE-EeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEE-cCcEEEEEECCCCeEEE
Q 002016 173 AAESVEVQQVI-QLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRSILVT 250 (981)
Q Consensus 173 ~~~~~~~~~vv-~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~v-g~~~lv~~d~~~g~L~v 250 (981)
..... ++ .-.++..+|++|...+ ++...|.++|+++-++.-..... .+..++ .+..++.. ++.+++.+
T Consensus 299 ~~~~~----cvkf~pd~~n~fl~G~sd~---ki~~wDiRs~kvvqeYd~hLg~i--~~i~F~~~g~rFiss-SDdks~ri 368 (503)
T KOG0282|consen 299 DKVPT----CVKFHPDNQNIFLVGGSDK---KIRQWDIRSGKVVQEYDRHLGAI--LDITFVDEGRRFISS-SDDKSVRI 368 (503)
T ss_pred CCCce----eeecCCCCCcEEEEecCCC---cEEEEeccchHHHHHHHhhhhhe--eeeEEccCCceEeee-ccCccEEE
Confidence 64322 22 1124446666665443 79999999999987773222111 134444 33344433 24456655
Q ss_pred EEeecC
Q 002016 251 VSFKNR 256 (981)
Q Consensus 251 ~~L~sg 256 (981)
-+...+
T Consensus 369 We~~~~ 374 (503)
T KOG0282|consen 369 WENRIP 374 (503)
T ss_pred EEcCCC
Confidence 554433
No 133
>PRK04043 tolB translocation protein TolB; Provisional
Probab=61.53 E-value=3.3e+02 Score=32.19 Aligned_cols=147 Identities=10% Similarity=0.024 Sum_probs=73.2
Q ss_pred CCCE-EEEEcC---CCEEEEEECCCCccceEEEcCCCcceeeee-eeecCeEEEEEc--cCCEEEEEeCCCCcEeEEEec
Q 002016 52 GRKR-VVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGID-IALGKYVITLSS--DGSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 52 ~~~~-VyvaT~---~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~-~~~~~~vV~Vs~--~g~~V~A~da~tG~llWe~~~ 124 (981)
++++ +|+.+. ...|+.+|..+|+..-= ...++...... .+.+..+++... ....++.+|..+|+. +.-.
T Consensus 198 DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l--t~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~--~~LT 273 (419)
T PRK04043 198 KEQTAFYYTSYGERKPTLYKYNLYTGKKEKI--ASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL--TQIT 273 (419)
T ss_pred CCCcEEEEEEccCCCCEEEEEECCCCcEEEE--ecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE--EEcc
Confidence 4443 555433 35799999999864221 12221111111 124555665533 235799999888863 2211
Q ss_pred cCccccCCceeecccccccCCcEEEEEe----CCEEEEEECCCCcE-eEEEeccCcceeeeEEEEeecCCeEEEEEecCC
Q 002016 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEI-LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (981)
Q Consensus 125 ~~~~~s~~~~~v~~~~~~~~~~~V~V~~----~g~l~aLd~~tG~~-~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~ 199 (981)
..+.......+.| + +..+++.+ ...|+.+|..+|+. +-++.. .... .. +.++..+.+.+....
T Consensus 274 ~~~~~d~~p~~SP-----D-G~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g---~~~~-~~--SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 274 NYPGIDVNGNFVE-----D-DKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG---KNNS-SV--STYKNYIVYSSRETN 341 (419)
T ss_pred cCCCccCccEECC-----C-CCEEEEEECCCCCceEEEEECCCCCeEeCccCC---CcCc-eE--CCCCCEEEEEEcCCC
Confidence 1111101111221 2 33444443 23899999999986 333221 1111 12 345555555544321
Q ss_pred -----ceeEEEEEECCCCce
Q 002016 200 -----SQFHAYQINAMNGEL 214 (981)
Q Consensus 200 -----~~~~v~aLd~~tG~~ 214 (981)
....++.+|+.+|+.
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI 361 (419)
T ss_pred cccCCCCcEEEEEECCCCCe
Confidence 114688889988874
No 134
>PRK05137 tolB translocation protein TolB; Provisional
Probab=61.47 E-value=3.3e+02 Score=32.11 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=54.1
Q ss_pred ecCeEEEEEc--cCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee---CCEEEEEECCCCcEe
Q 002016 94 LGKYVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS---KGCLHAVSSIDGEIL 167 (981)
Q Consensus 94 ~~~~vV~Vs~--~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~---~g~l~aLd~~tG~~~ 167 (981)
.++.+++++. ++..|+.||..+|+..=-....+... ...+.| + ++.+++ .. +..++.+|.++|+..
T Consensus 212 DG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~--~~~~SP-----D-G~~la~~~~~~g~~~Iy~~d~~~~~~~ 283 (435)
T PRK05137 212 NRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF--APRFSP-----D-GRKVVMSLSQGGNTDIYTMDLRSGTTT 283 (435)
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc--CcEECC-----C-CCEEEEEEecCCCceEEEEECCCCceE
Confidence 5566777753 24689999999997531111111111 111111 2 333433 32 346999999888753
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCce
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~ 214 (981)
= ........ .....+.++..+++.+..++ ...++.+|+.+|+.
T Consensus 284 ~-Lt~~~~~~--~~~~~spDG~~i~f~s~~~g-~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 284 R-LTDSPAID--TSPSYSPDGSQIVFESDRSG-SPQLYVMNADGSNP 326 (435)
T ss_pred E-ccCCCCcc--CceeEcCCCCEEEEEECCCC-CCeEEEEECCCCCe
Confidence 1 11111111 01111335555655443222 23588888877765
No 135
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=61.12 E-value=55 Score=31.19 Aligned_cols=71 Identities=28% Similarity=0.471 Sum_probs=42.4
Q ss_pred CccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-E
Q 002016 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-S 151 (981)
Q Consensus 73 G~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~ 151 (981)
+.++|......+ ......+.+..+| .+...|. +|..+|+..... .. +..+++ .
T Consensus 41 ~~~vW~snt~~~--------~~~~~~l~l~~dG-nLvl~~~-~g~~vW~S~~~~-~~---------------~~~~~~L~ 94 (116)
T cd00028 41 RTVVWVANRDNP--------SGSSCTLTLQSDG-NLVIYDG-SGTVVWSSNTTR-VN---------------GNYVLVLL 94 (116)
T ss_pred CeEEEECCCCCC--------CCCCEEEEEecCC-CeEEEcC-CCcEEEEecccC-CC---------------CceEEEEe
Confidence 678898654332 1122234445544 6777775 689999876543 11 112333 3
Q ss_pred eCCEEEEEECCCCcEeEEE
Q 002016 152 SKGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 152 ~~g~l~aLd~~tG~~~W~~ 170 (981)
.+|.+.-++. +|+++|+-
T Consensus 95 ddGnlvl~~~-~~~~~W~S 112 (116)
T cd00028 95 DDGNLVLYDS-DGNFLWQS 112 (116)
T ss_pred CCCCEEEECC-CCCEEEcC
Confidence 6788887775 58999974
No 136
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=60.61 E-value=2e+02 Score=33.63 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=60.1
Q ss_pred EeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeee-eeeecCeEEEEEccCCEEEEEeC
Q 002016 35 QQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGI-DIALGKYVITLSSDGSTLRAWNL 113 (981)
Q Consensus 35 ~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l-~~~~~~~vV~Vs~~g~~V~A~da 113 (981)
+.++|..+...|-.=++++..+.+-.-+-.+.--|+.||+.+=...-..+.+.... --+.|...|+ |+.++.+.+||.
T Consensus 263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs~dr~i~~wdl 341 (519)
T KOG0293|consen 263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GSPDRTIIMWDL 341 (519)
T ss_pred eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cCCCCcEEEecC
Confidence 34444443333332234455566666666677778888876544322211111111 1234445444 666789999996
Q ss_pred CCCcEeEEEeccC-ccccCCceeecccccccCCcEEEEE-eCCEEEEEECCC
Q 002016 114 PDGQMVWESFLRG-SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSID 163 (981)
Q Consensus 114 ~tG~llWe~~~~~-~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~t 163 (981)
||.++=.++... +-+ -++.+. ..+..|+.. .|.++..++..+
T Consensus 342 -Dgn~~~~W~gvr~~~v-~dlait------~Dgk~vl~v~~d~~i~l~~~e~ 385 (519)
T KOG0293|consen 342 -DGNILGNWEGVRDPKV-HDLAIT------YDGKYVLLVTVDKKIRLYNREA 385 (519)
T ss_pred -Ccchhhccccccccee-EEEEEc------CCCcEEEEEecccceeeechhh
Confidence 788763333221 111 122111 234455554 577777776544
No 137
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=60.45 E-value=2e+02 Score=34.48 Aligned_cols=144 Identities=9% Similarity=0.116 Sum_probs=76.2
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCe-EEEEEccCCEEEEEeCCCCcEeEEEec-cCcccc
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKY-VITLSSDGSTLRAWNLPDGQMVWESFL-RGSKHS 130 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~-vV~Vs~~g~~V~A~da~tG~llWe~~~-~~~~~s 130 (981)
+..|-.++..|.|.-.+.+||..-=....+.+..+..++...... ++...+++|.|..||...-.+...+.- .....
T Consensus 133 DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~- 211 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPC- 211 (673)
T ss_pred cceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCc-
Confidence 334555667788888898888755444444333332332222333 333356678999999865455544322 12222
Q ss_pred CCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEE
Q 002016 131 KPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQIN 208 (981)
Q Consensus 131 ~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd 208 (981)
.+.++.|. ...++|. -|.+++-+|..+-+..=...... |...+.-...|...++|. ++++++++|
T Consensus 212 ~gicfsps------ne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~----Plstvaf~~~G~~L~aG~---s~G~~i~YD 278 (673)
T KOG4378|consen 212 RGICFSPS------NEALLVSVGYDKKINIYDIRSQASTDRLTYSH----PLSTVAFSECGTYLCAGN---SKGELIAYD 278 (673)
T ss_pred CcceecCC------ccceEEEecccceEEEeecccccccceeeecC----CcceeeecCCceEEEeec---CCceEEEEe
Confidence 45566543 3345553 48999999876433221111111 122221123444444443 445899999
Q ss_pred CC
Q 002016 209 AM 210 (981)
Q Consensus 209 ~~ 210 (981)
++
T Consensus 279 ~R 280 (673)
T KOG4378|consen 279 MR 280 (673)
T ss_pred cc
Confidence 86
No 138
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=60.29 E-value=3e+02 Score=31.25 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=24.2
Q ss_pred cCCcEEEEE--eC-CEEEEEECCCCcEeEEEeccCc
Q 002016 143 DKDSLILVS--SK-GCLHAVSSIDGEILWTRDFAAE 175 (981)
Q Consensus 143 ~~~~~V~V~--~~-g~l~aLd~~tG~~~W~~~~~~~ 175 (981)
++++.+++. .+ +.|.++++. |+++=++..+..
T Consensus 221 DadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~ 255 (307)
T COG3386 221 DADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVK 255 (307)
T ss_pred eCCCCEEEecccCCceEEEECCC-CcEEEEEECCCC
Confidence 566777753 34 399999998 999999888743
No 139
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=60.15 E-value=67 Score=30.44 Aligned_cols=71 Identities=30% Similarity=0.521 Sum_probs=41.5
Q ss_pred CccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-
Q 002016 73 GEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS- 151 (981)
Q Consensus 73 G~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~- 151 (981)
+.++|......+ ......+.+..+ |.+...|. +|..+|+...... .+..++++
T Consensus 40 ~~~vW~snt~~~--------~~~~~~l~l~~d-GnLvl~~~-~g~~vW~S~t~~~----------------~~~~~~~L~ 93 (114)
T smart00108 40 RTVVWVANRDNP--------VSDSCTLTLQSD-GNLVLYDG-DGRVVWSSNTTGA----------------NGNYVLVLL 93 (114)
T ss_pred CcEEEECCCCCC--------CCCCEEEEEeCC-CCEEEEeC-CCCEEEEecccCC----------------CCceEEEEe
Confidence 678998544322 111134444554 46777775 5899999765411 01223343
Q ss_pred eCCEEEEEECCCCcEeEEE
Q 002016 152 SKGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 152 ~~g~l~aLd~~tG~~~W~~ 170 (981)
.+|.|.-++. .|+++|+-
T Consensus 94 ddGnlvl~~~-~~~~~W~S 111 (114)
T smart00108 94 DDGNLVIYDS-DGNFLWQS 111 (114)
T ss_pred CCCCEEEECC-CCCEEeCC
Confidence 6788877774 77899974
No 140
>PRK02888 nitrous-oxide reductase; Validated
Probab=60.03 E-value=2.7e+02 Score=34.74 Aligned_cols=142 Identities=12% Similarity=0.130 Sum_probs=79.0
Q ss_pred EEEEEcC-CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEc----cCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 55 RVVVSTE-ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSS----DGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 55 ~VyvaT~-~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~----~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
.++..++ .|.+.++|+++-++.|+..++.. .+.....-+++.++++. .|..+...++++-. |-..+.-...
T Consensus 206 ~l~~~~ey~~~vSvID~etmeV~~qV~Vdgn--pd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d--~~vvfni~~i 281 (635)
T PRK02888 206 DLDDPKKYRSLFTAVDAETMEVAWQVMVDGN--LDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERD--WVVVFNIARI 281 (635)
T ss_pred EeecccceeEEEEEEECccceEEEEEEeCCC--cccceECCCCCEEEEeccCcccCcceeeeccccCc--eEEEEchHHH
Confidence 4555543 48999999999999999988764 22222233556666664 24556666654433 3333322111
Q ss_pred cCCceeecccccccCCcEEEEEeCCEEEEEECCC----C-cEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEE
Q 002016 130 SKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSID----G-EILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHA 204 (981)
Q Consensus 130 s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~t----G-~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v 204 (981)
..++ ..++..++ .+++|..+|..+ | +++=....+.. |-.+-.+.++..+|+.+--.. .+
T Consensus 282 ---ea~v------kdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKs---PHGV~vSPDGkylyVanklS~---tV 345 (635)
T PRK02888 282 ---EEAV------KAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKN---PHGVNTSPDGKYFIANGKLSP---TV 345 (635)
T ss_pred ---HHhh------hCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCC---ccceEECCCCCEEEEeCCCCC---cE
Confidence 0011 12334444 577899999988 4 33333333321 334433445666666443222 48
Q ss_pred EEEECCCCceee
Q 002016 205 YQINAMNGELLN 216 (981)
Q Consensus 205 ~aLd~~tG~~lw 216 (981)
..+|.++-+.+-
T Consensus 346 SVIDv~k~k~~~ 357 (635)
T PRK02888 346 TVIDVRKLDDLF 357 (635)
T ss_pred EEEEChhhhhhh
Confidence 888988866543
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=58.97 E-value=88 Score=36.89 Aligned_cols=78 Identities=14% Similarity=0.170 Sum_probs=54.0
Q ss_pred ccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 50 ~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
++++..|.++...|.|.-|.++||+.+=...++.. +..+....++..+++++..|.|+-||...-+.+-++.-.+.+.
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~KieG~--v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~ 389 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV--VSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVH 389 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheeeeccE--EeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccc
Confidence 45677788889999999999999997777766554 3322122333444444444599999998888877777666554
No 142
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=58.49 E-value=2.9e+02 Score=30.48 Aligned_cols=134 Identities=12% Similarity=0.122 Sum_probs=74.7
Q ss_pred EEEE-EccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcE--eEEEeccC
Q 002016 98 VITL-SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI--LWTRDFAA 174 (981)
Q Consensus 98 vV~V-s~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~--~W~~~~~~ 174 (981)
++.+ ++.+.++|-|.+.||.=.-..+-+...+ ..+.+.| + .+.+.+.++-.+.-+|..++++ +=++....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqV-NrLeiTp-----d-k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~ 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQV-NRLEITP-----D-KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHT 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccce-eeEEEcC-----C-cchhhhccCCeeEEEEccCCCCCceeEEeccC
Confidence 4444 4678899999999999998888776654 3444442 1 2234445778888888888864 44444332
Q ss_pred cceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCce-eeeeee-------eccCCccCceEEE--cCcEEEEEECC
Q 002016 175 ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL-LNHETA-------AFSGGFVGDVALV--SSDTLVTLDTT 244 (981)
Q Consensus 175 ~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~-lw~~~v-------~~p~~~~~~~~~v--g~~~lv~~d~~ 244 (981)
. .|-++||+-. ++-..-.-++|.. +|+.+. ..++.+. +++. .+..+...|.
T Consensus 84 k--------------NVtaVgF~~d--grWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn--~vvlhpnQteLis~dq- 144 (311)
T KOG0315|consen 84 K--------------NVTAVGFQCD--GRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVN--TVVLHPNQTELISGDQ- 144 (311)
T ss_pred C--------------ceEEEEEeec--CeEEEecCCCceEEEEeccCcccchhccCCCCcc--eEEecCCcceEEeecC-
Confidence 2 3333444311 0111112233332 354432 2222222 2332 4446666664
Q ss_pred CCeEEEEEeecCe
Q 002016 245 RSILVTVSFKNRK 257 (981)
Q Consensus 245 ~g~L~v~~L~sg~ 257 (981)
+|.+++=||+...
T Consensus 145 sg~irvWDl~~~~ 157 (311)
T KOG0315|consen 145 SGNIRVWDLGENS 157 (311)
T ss_pred CCcEEEEEccCCc
Confidence 5889999998764
No 143
>PRK13684 Ycf48-like protein; Provisional
Probab=58.31 E-value=3.3e+02 Score=31.10 Aligned_cols=186 Identities=14% Similarity=0.160 Sum_probs=84.0
Q ss_pred HHHHHHHhccCCccccccccccccEeEEEeccCcee---eeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCC
Q 002016 7 ILTLLFLSSCTIPSLSLYEDQVGLMDWHQQYIGKVK---HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGI 83 (981)
Q Consensus 7 l~~~~~l~~~~~~~~AlyedqvG~~dW~~~~vG~~~---~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~ 83 (981)
|+++++|++|..+..... ...-|++...+... .-.|. +++..|+....|.|..= .||-.-|++....
T Consensus 15 ~~~~~~~~~~~~~~~~~~----~~~~W~~~~~~~~~~l~~v~F~----d~~~g~avG~~G~il~T--~DgG~tW~~~~~~ 84 (334)
T PRK13684 15 LALLLVLSGCSTTRVPML----SSSPWQVIDLPTEANLLDIAFT----DPNHGWLVGSNRTLLET--NDGGETWEERSLD 84 (334)
T ss_pred HHHHhhccccCCCCcccc----cCCCcEEEecCCCCceEEEEEe----CCCcEEEEECCCEEEEE--cCCCCCceECccC
Confidence 344455566643222222 22349987754322 12333 23445555556655443 4677889986432
Q ss_pred C--c--ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC-ceeecccccccCCcEEEEE-eCCEEE
Q 002016 84 N--D--VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP-LLLVPTNLKVDKDSLILVS-SKGCLH 157 (981)
Q Consensus 84 ~--~--~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~-~~~v~~~~~~~~~~~V~V~-~~g~l~ 157 (981)
. . .+..+. ..++..++++. .+. .|-..||-.-|+........+.. ..+.. ..++.+++. ..|.++
T Consensus 85 ~~~~~~~l~~v~-~~~~~~~~~G~-~g~--i~~S~DgG~tW~~~~~~~~~~~~~~~i~~-----~~~~~~~~~g~~G~i~ 155 (334)
T PRK13684 85 LPEENFRLISIS-FKGDEGWIVGQ-PSL--LLHTTDGGKNWTRIPLSEKLPGSPYLITA-----LGPGTAEMATNVGAIY 155 (334)
T ss_pred CcccccceeeeE-EcCCcEEEeCC-Cce--EEEECCCCCCCeEccCCcCCCCCceEEEE-----ECCCcceeeeccceEE
Confidence 1 1 111221 12333334343 333 34457899999876422111001 11110 112223332 345443
Q ss_pred EEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeee
Q 002016 158 AVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (981)
Q Consensus 158 aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~ 219 (981)
...+|-.-|+............+. ...++.+++++..| .++. ...+|...|+..
T Consensus 156 --~S~DgG~tW~~~~~~~~g~~~~i~-~~~~g~~v~~g~~G----~i~~-s~~~gg~tW~~~ 209 (334)
T PRK13684 156 --RTTDGGKNWEALVEDAAGVVRNLR-RSPDGKYVAVSSRG----NFYS-TWEPGQTAWTPH 209 (334)
T ss_pred --EECCCCCCceeCcCCCcceEEEEE-ECCCCeEEEEeCCc----eEEE-EcCCCCCeEEEe
Confidence 345677789864432221122222 12345555556555 2332 233666778763
No 144
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=58.14 E-value=4.1e+02 Score=32.16 Aligned_cols=183 Identities=11% Similarity=0.158 Sum_probs=94.7
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKP 132 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~ 132 (981)
.+.+++.+-.|.|-=||+.++++. ++.-.....|..+.+..++..++-++.+|.+.-||..+|..- ++.+... +
T Consensus 290 kd~lItVSl~G~in~ln~~d~~~~-~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~---~~~g~~h--~ 363 (603)
T KOG0318|consen 290 KDHLITVSLSGTINYLNPSDPSVL-KVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD---RLAGKGH--T 363 (603)
T ss_pred CCeEEEEEcCcEEEEecccCCChh-heecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc---ccccccc--c
Confidence 678999999999999999999943 332233334555533344455554666889999999988754 2221111 1
Q ss_pred ceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEE--EeccCcceeeeEEEEeecC-CeEEEEEecCCceeEEEEEEC
Q 002016 133 LLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWT--RDFAAESVEVQQVIQLDES-DQIYVVGYAGSSQFHAYQINA 209 (981)
Q Consensus 133 ~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~--~~~~~~~~~~~~vv~s~~~-~~Vyvvg~~g~~~~~v~aLd~ 209 (981)
..+... ....++.++-+..|..|..++.+.+..-=. .+.+.. |..+. +..+ +...+++..+ ++.|.-
T Consensus 364 nqI~~~-~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~Q---P~~la-v~~d~~~avv~~~~~-----iv~l~~ 433 (603)
T KOG0318|consen 364 NQIKGM-AASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQ---PKGLA-VLSDGGTAVVACISD-----IVLLQD 433 (603)
T ss_pred ceEEEE-eecCCCcEEEEecCCeEEEEecccCcccccceeecCCC---ceeEE-EcCCCCEEEEEecCc-----EEEEec
Confidence 111110 001223333334688898888765532211 122211 22221 1233 3444433333 555553
Q ss_pred CCCceeeeeeeeccCCccCceEEEc-CcEEEEEECCCCeEEEEEeecCe
Q 002016 210 MNGELLNHETAAFSGGFVGDVALVS-SDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 210 ~tG~~lw~~~v~~p~~~~~~~~~vg-~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
.++ +-+. |-+....++.+. ++..+|+-...+.+|+..|..+.
T Consensus 434 ~~~--~~~~----~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~ 476 (603)
T KOG0318|consen 434 QTK--VSSI----PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE 476 (603)
T ss_pred CCc--ceee----ccccccceEEEcCCCCEEEEecccceEEEEEecCCc
Confidence 332 2222 223333444442 23344444456778888887654
No 145
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=58.05 E-value=2.2e+02 Score=32.75 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=31.4
Q ss_pred eeEEEEEECCC-CceeeeeeeeccC-CccCceEEEc---Cc---EEEEEECCCCeEEEEEeecCe
Q 002016 201 QFHAYQINAMN-GELLNHETAAFSG-GFVGDVALVS---SD---TLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 201 ~~~v~aLd~~t-G~~lw~~~v~~p~-~~~~~~~~vg---~~---~lv~~d~~~g~L~v~~L~sg~ 257 (981)
...++.+|++| |..+|+..+.... +++. +.++. ++ .+++.|. .|++...|+.+..
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~-~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~~ 242 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSS-PAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSAN 242 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEE-EEEE-TTSSSEE-EEEEEET-TSEEEEEE--TTS
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccc-cEEEeccCCCeEEEEEEEcC-CCcEEEEECCCCC
Confidence 47899999999 9999987654432 3332 32331 22 6667785 5899999987543
No 146
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=56.98 E-value=2.7e+02 Score=31.46 Aligned_cols=103 Identities=12% Similarity=0.073 Sum_probs=57.9
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
...+|+++-+|.|.-+|..+|... .+.+. +.+.++.-.-..+.|+-|+.++++.-||+-.-...=.......+.
T Consensus 65 ~~~~~~G~~dg~vr~~Dln~~~~~---~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy-- 139 (323)
T KOG1036|consen 65 ESTIVTGGLDGQVRRYDLNTGNED---QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVY-- 139 (323)
T ss_pred CceEEEeccCceEEEEEecCCcce---eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEE--
Confidence 567999999999999999998642 22222 223333222334455547778899999986511111111111000
Q ss_pred CceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeE
Q 002016 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILW 168 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W 168 (981)
.+ ...++.++|. .+..+..+|..+=+.--
T Consensus 140 ---~~-----~v~g~~LvVg~~~r~v~iyDLRn~~~~~ 169 (323)
T KOG1036|consen 140 ---CM-----DVSGNRLVVGTSDRKVLIYDLRNLDEPF 169 (323)
T ss_pred ---EE-----eccCCEEEEeecCceEEEEEcccccchh
Confidence 01 1124455664 57778888876654433
No 147
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=56.98 E-value=2.9e+02 Score=31.17 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=25.4
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcc
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~ 128 (981)
++..++-.+.+.+|++||+++|+..-+.+....-
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~ 134 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF 134 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccce
Confidence 3334443455679999999999999998887654
No 148
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=55.82 E-value=2e+02 Score=32.59 Aligned_cols=196 Identities=13% Similarity=0.126 Sum_probs=102.2
Q ss_pred cCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcc-------eeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEe
Q 002016 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDV-------VDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESF 123 (981)
Q Consensus 51 ~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~-------i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~ 123 (981)
.++..++.++-+|-+-.-|-.+|+++=.......+. +......-+..++.-|+.+|++..|...||.-+-++.
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd 302 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD 302 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh
Confidence 356678889999999999999998753322222221 1122112333455545556788888888888776655
Q ss_pred ccCccccCCceeecccccccCCc-EEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCce
Q 002016 124 LRGSKHSKPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 124 ~~~~~~s~~~~~v~~~~~~~~~~-~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
-.-. ++...+. - ..|+ .++-. .|-.+.-.-.++|+.+=+++....-..- +....++..+.-.+.+|
T Consensus 303 rAHt---kGvt~l~--F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~--a~ft~dG~~iisaSsDg--- 370 (508)
T KOG0275|consen 303 RAHT---KGVTCLS--F--SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE--ATFTDDGHHIISASSDG--- 370 (508)
T ss_pred hhhc---cCeeEEE--E--ccCcchhhcccccceEEEeccccchhHHHhcCccccccc--eEEcCCCCeEEEecCCc---
Confidence 2211 1111110 0 1122 22222 3566666667899988777654432211 11122333443333333
Q ss_pred eEEEEEECCCCceeeeeeeeccCCccC-ceEEE-cC--cEEEEEECCCCeEEEEEeecCeeeEEEEe
Q 002016 202 FHAYQINAMNGELLNHETAAFSGGFVG-DVALV-SS--DTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (981)
Q Consensus 202 ~~v~aLd~~tG~~lw~~~v~~p~~~~~-~~~~v-g~--~~lv~~d~~~g~L~v~~L~sg~~~~~~~~ 264 (981)
.+-..+.+|++-+..++... .+..- ++.+. -+ .++||-- ...+++..+. |++ ++.++
T Consensus 371 -tvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNr--sntv~imn~q-GQv-Vrsfs 431 (508)
T KOG0275|consen 371 -TVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNR--SNTVYIMNMQ-GQV-VRSFS 431 (508)
T ss_pred -cEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcC--CCeEEEEecc-ceE-Eeeec
Confidence 46667778887776654221 11111 22222 22 2677764 3578888875 443 44444
No 149
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=55.62 E-value=1.7e+02 Score=36.45 Aligned_cols=195 Identities=11% Similarity=0.183 Sum_probs=101.2
Q ss_pred eeeeeecccCCCEEEEEcCCCEEEEEECCCCcc---ceEEEcCCCcceeeeeee-ecCeEEEEEccCCEEEEEeCCCCcE
Q 002016 43 HAVFHTQKTGRKRVVVSTEENVIASLDLRHGEI---FWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPDGQM 118 (981)
Q Consensus 43 ~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~i---vWR~~l~~~~~i~~l~~~-~~~~vV~Vs~~g~~V~A~da~tG~l 118 (981)
+..|+.. .-..-++.+..+|++.+-|.+++.. .|+-... .+.++... .+..++++| .+..+..||..+=+.
T Consensus 152 sl~F~~~-~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S---~vtsL~~~~d~~~~ls~~-RDkvi~vwd~~~~~~ 226 (775)
T KOG0319|consen 152 SLLFHPH-WNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKS---AVTSLAFSEDSLELLSVG-RDKVIIVWDLVQYKK 226 (775)
T ss_pred EEEeCCc-cchhheeecCCCceEEEEEcccCchHHHHHHhhhh---heeeeeeccCCceEEEec-cCcEEEEeehhhhhh
Confidence 3456532 2234488899999999999998876 3443322 23344222 344455544 456899999855544
Q ss_pred eEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccC-cceeeeEEEEeecCCeEEEEEe
Q 002016 119 VWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAA-ESVEVQQVIQLDESDQIYVVGY 196 (981)
Q Consensus 119 lWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~-~~~~~~~vv~s~~~~~Vyvvg~ 196 (981)
+=..++.... .+...... +-..++.+.+.. .+|.+.-.|.++|+.+-+.+.+. +. ...+......+.+..+..
T Consensus 227 l~~lp~ye~~--E~vv~l~~-~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e--~~~~~~~~~~~~~l~vta 301 (775)
T KOG0319|consen 227 LKTLPLYESL--ESVVRLRE-ELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEE--IDHLLAIESMSQLLLVTA 301 (775)
T ss_pred hheechhhhe--eeEEEech-hcCCcceEEEEecCCceEEEEecccchhhhhhccCCchh--hhcceeccccCceEEEEc
Confidence 4333332211 11222211 000112344554 58999999999999888776653 22 122222233444444333
Q ss_pred cCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcC--cEEEEEECCCCeEEEEEee
Q 002016 197 AGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSS--DTLVTLDTTRSILVTVSFK 254 (981)
Q Consensus 197 ~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~--~~lv~~d~~~g~L~v~~L~ 254 (981)
.- .+.-+|..++++..+. ++....+. ++-++|. ..++.. ++.+.|++.++.
T Consensus 302 eQ----nl~l~d~~~l~i~k~i-vG~ndEI~-Dm~~lG~e~~~laVA-TNs~~lr~y~~~ 354 (775)
T KOG0319|consen 302 EQ----NLFLYDEDELTIVKQI-VGYNDEIL-DMKFLGPEESHLAVA-TNSPELRLYTLP 354 (775)
T ss_pred cc----eEEEEEccccEEehhh-cCCchhhe-eeeecCCccceEEEE-eCCCceEEEecC
Confidence 22 2555688888887665 22222222 3334452 233332 245566666543
No 150
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=55.09 E-value=2.5e+02 Score=34.27 Aligned_cols=115 Identities=16% Similarity=0.202 Sum_probs=64.9
Q ss_pred EEEEcCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccc----c
Q 002016 56 VVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH----S 130 (981)
Q Consensus 56 VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~----s 130 (981)
+|.+.....|+.||+.-|. |=..++... .+.....-.-.+++.+|+.+|.|-+||+-+-...=.......+- .
T Consensus 148 ly~~gsg~evYRlNLEqGr--fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 148 LYLVGSGSEVYRLNLEQGR--FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGG 225 (703)
T ss_pred EEEeecCcceEEEEccccc--cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccc
Confidence 8888888889999999995 444444331 12222122345677778877899999998766554444432211 0
Q ss_pred CCceeecccccccCCc-EEEEE-eCCEEEEEECCCCcEeEEEecc
Q 002016 131 KPLLLVPTNLKVDKDS-LILVS-SKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 131 ~~~~~v~~~~~~~~~~-~V~V~-~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
...+.+ ....-..++ .+-|. +.|.++-+|..+-+++-..+..
T Consensus 226 ~~~~sv-Tal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~ 269 (703)
T KOG2321|consen 226 DAAPSV-TALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHG 269 (703)
T ss_pred cccCcc-eEEEecCCceeEEeeccCCcEEEEEcccCCceeecccC
Confidence 000000 000001223 23333 5888888888877776655443
No 151
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=54.83 E-value=3.3e+02 Score=29.98 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=100.9
Q ss_pred CCEEEEEcCCCEEEEEECCC---CccceEEEcCCCc--cee------e--eeeeecCeEEEEEccCCEEEEEeC------
Q 002016 53 RKRVVVSTEENVIASLDLRH---GEIFWRHVLGIND--VVD------G--IDIALGKYVITLSSDGSTLRAWNL------ 113 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~t---G~ivWR~~l~~~~--~i~------~--l~~~~~~~vV~Vs~~g~~V~A~da------ 113 (981)
+..+++++-.|.|+-+..++ |+. +.++ .+. + ...+..++.+..+++ |.|++|.=
T Consensus 22 ~~~l~agn~~G~iav~sl~sl~s~sa------~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es 94 (325)
T KOG0649|consen 22 KQYLFAGNLFGDIAVLSLKSLDSGSA------EPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEES 94 (325)
T ss_pred ceEEEEecCCCeEEEEEehhhhcccc------CCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhh
Confidence 44578888888888776543 221 1111 110 0 001223444554554 79999952
Q ss_pred CCCcEeEEEeccCccccCCceeecccccc-c-CCcEEEE-EeCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCe
Q 002016 114 PDGQMVWESFLRGSKHSKPLLLVPTNLKV-D-KDSLILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQ 190 (981)
Q Consensus 114 ~tG~llWe~~~~~~~~s~~~~~v~~~~~~-~-~~~~V~V-~~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~ 190 (981)
.-=+.+||...+-... ..++-..+... + +.+.++. .+|+.++..|.++|+..=+++.-..-+ -.++.-...+.
T Consensus 95 ~~~K~lwe~~~P~~~~--~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYv--H~vv~R~~~~q 170 (325)
T KOG0649|consen 95 LATKRLWEVKIPMQVD--AVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYV--HSVVGRNANGQ 170 (325)
T ss_pred ccchhhhhhcCccccC--cccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCccee--eeeeecccCcc
Confidence 2347789877653321 11111111110 1 2333444 579999999999999998887654432 11221124555
Q ss_pred EEEEEecCCceeEEEEEECCCCceeeeeeeec-c---C-CccC--ceEEEcCcEEEEEECCCCeEEEEEeecCeeeEEEE
Q 002016 191 IYVVGYAGSSQFHAYQINAMNGELLNHETAAF-S---G-GFVG--DVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQET 263 (981)
Q Consensus 191 Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~-p---~-~~~~--~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~~~~~~ 263 (981)
++-.+-+| .+..-|.+||+-+.....-- | + .... -++-+....++|.- ...|..-.|.+-. ....+
T Consensus 171 ilsG~EDG----tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg--Gp~lslwhLrsse-~t~vf 243 (325)
T KOG0649|consen 171 ILSGAEDG----TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG--GPKLSLWHLRSSE-STCVF 243 (325)
T ss_pred eeecCCCc----cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC--CCceeEEeccCCC-ceEEE
Confidence 55434344 57888999988664331111 1 1 1111 24445667888873 3355555555533 24445
Q ss_pred ee
Q 002016 264 HL 265 (981)
Q Consensus 264 ~l 265 (981)
|+
T Consensus 244 pi 245 (325)
T KOG0649|consen 244 PI 245 (325)
T ss_pred ec
Confidence 54
No 152
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=54.55 E-value=1.6e+02 Score=34.34 Aligned_cols=93 Identities=13% Similarity=0.216 Sum_probs=56.9
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-e-CCEEEEEECCCCcEeEEEec
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSIDGEILWTRDF 172 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~-~g~l~aLd~~tG~~~W~~~~ 172 (981)
+.+++.-+|.+..|..||..||+.+-+...+.-.. +..+ ..|+..++. + |.++..+|..+|+++|+-..
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~--S~sf-------n~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~ 213 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY--SMSF-------NRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVA 213 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceeeecCCCCeEE--EEEe-------ccCCceeeeecccceeEEEcCCCCcEeeeccc
Confidence 33444435667899999999999888766332221 1111 124445554 3 89999999999999999844
Q ss_pred cCcceeeeEEEEeecCCeEEEEEecC
Q 002016 173 AAESVEVQQVIQLDESDQIYVVGYAG 198 (981)
Q Consensus 173 ~~~~~~~~~vv~s~~~~~Vyvvg~~g 198 (981)
-.+.- +.+++- ..++.++..|+..
T Consensus 214 heG~k-~~Raif-l~~g~i~tTGfsr 237 (472)
T KOG0303|consen 214 HEGAK-PARAIF-LASGKIFTTGFSR 237 (472)
T ss_pred ccCCC-cceeEE-eccCceeeecccc
Confidence 33332 333332 2344466666654
No 153
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=54.13 E-value=3.4e+02 Score=30.82 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=69.0
Q ss_pred eEEEEEccCCEEEEEeCCCC-cEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcE--eEEEecc
Q 002016 97 YVITLSSDGSTLRAWNLPDG-QMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEI--LWTRDFA 173 (981)
Q Consensus 97 ~vV~Vs~~g~~V~A~da~tG-~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~--~W~~~~~ 173 (981)
.++.+--.+++++.||+.+| ...|...-.-.. ...+ +.++ .++.++..++.++.++|.. .+....+
T Consensus 38 ~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~----~~~~------d~~g-~Lv~~~~g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 38 ALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS----GALI------DAGG-RLIACEHGVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred EEEEEeCCCCeEEEecCCcCceEEEECCCCccc----ceee------cCCC-eEEEEccccEEEeccCCceeEEeccccC
Confidence 35665556789999999988 667776543321 1122 3344 4444555566666666655 4443332
Q ss_pred CcceeeeEEEEeecCCeEEEEEec----C----CceeEEEEEECCCCceeeee--eeeccCCccCceEEEcCcEEEEEEC
Q 002016 174 AESVEVQQVIQLDESDQIYVVGYA----G----SSQFHAYQINAMNGELLNHE--TAAFSGGFVGDVALVSSDTLVTLDT 243 (981)
Q Consensus 174 ~~~~~~~~vv~s~~~~~Vyvvg~~----g----~~~~~v~aLd~~tG~~lw~~--~v~~p~~~~~~~~~vg~~~lv~~d~ 243 (981)
........-.....++.+|+.... + ...+.||-+|+ .|...-.. .+..|.++ ++--.+..++.+|+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGl---a~SpDg~tly~aDT 182 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGL---AFSPDGKTLYVADT 182 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCce---EECCCCCEEEEEeC
Confidence 211111111112355677765544 1 11246788887 34433222 13333322 11112334555555
Q ss_pred CCCeEEEEEee
Q 002016 244 TRSILVTVSFK 254 (981)
Q Consensus 244 ~~g~L~v~~L~ 254 (981)
..+.++..++.
T Consensus 183 ~~~~i~r~~~d 193 (307)
T COG3386 183 PANRIHRYDLD 193 (307)
T ss_pred CCCeEEEEecC
Confidence 55555555554
No 154
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=53.55 E-value=3e+02 Score=31.80 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred eecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEe--CCEEEEEECCCC------
Q 002016 93 ALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDG------ 164 (981)
Q Consensus 93 ~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~g~l~aLd~~tG------ 164 (981)
+.++.++. .+.+..+.+|+..+|--+-.++...+-+ ...-+. .|+.+++.+ +.+|+..-.+++
T Consensus 203 P~gd~ilS-~srD~tik~We~~tg~cv~t~~~h~ewv-r~v~v~-------~DGti~As~s~dqtl~vW~~~t~~~k~~l 273 (406)
T KOG0295|consen 203 PLGDHILS-CSRDNTIKAWECDTGYCVKTFPGHSEWV-RMVRVN-------QDGTIIASCSNDQTLRVWVVATKQCKAEL 273 (406)
T ss_pred ecCCeeee-cccccceeEEecccceeEEeccCchHhE-EEEEec-------CCeeEEEecCCCceEEEEEeccchhhhhh
Q ss_pred --------cEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCc
Q 002016 165 --------EILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSD 236 (981)
Q Consensus 165 --------~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~ 236 (981)
.+.|......+...-++- +..++.+.+.+-..+ .+-..|..||..+-+. ++-..++.+-.+-.|+.
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~--~~~~~~~l~s~SrDk---tIk~wdv~tg~cL~tL-~ghdnwVr~~af~p~Gk 347 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATG--STNGGQVLGSGSRDK---TIKIWDVSTGMCLFTL-VGHDNWVRGVAFSPGGK 347 (406)
T ss_pred hccccceEEEEecccccCcchhhccC--CCCCccEEEeecccc---eEEEEeccCCeEEEEE-ecccceeeeeEEcCCCe
Q ss_pred EEEEEECCCCeEEEEEeecCe
Q 002016 237 TLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 237 ~lv~~d~~~g~L~v~~L~sg~ 257 (981)
+++... ++++|++-|+++++
T Consensus 348 yi~Sca-DDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 348 YILSCA-DDKTLRVWDLKNLQ 367 (406)
T ss_pred EEEEEe-cCCcEEEEEeccce
No 155
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=53.47 E-value=68 Score=36.98 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=65.9
Q ss_pred cCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeee-----eeeecCeEEEEEccCCEEEEEeCCCCcEeEEEecc
Q 002016 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGI-----DIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 51 ~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l-----~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~ 125 (981)
++++.|..++-+|.|-.-||++|+..=|.--....-|.++ +..-....+.-++.++.++-||..-|+.+--....
T Consensus 167 PDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgH 246 (480)
T KOG0271|consen 167 PDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGH 246 (480)
T ss_pred CCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccC
Confidence 4567788888999999999999987655332222123222 11122233443555789999999999888766655
Q ss_pred CccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEe
Q 002016 126 GSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL 167 (981)
Q Consensus 126 ~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~ 167 (981)
...+ .++. ..+++.++-. .|+++...++.+|...
T Consensus 247 T~~V---TCvr-----wGG~gliySgS~DrtIkvw~a~dG~~~ 281 (480)
T KOG0271|consen 247 TASV---TCVR-----WGGEGLIYSGSQDRTIKVWRALDGKLC 281 (480)
T ss_pred ccce---EEEE-----EcCCceEEecCCCceEEEEEccchhHH
Confidence 4332 1222 1234455554 3777777777776543
No 156
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=51.78 E-value=4e+02 Score=30.14 Aligned_cols=105 Identities=12% Similarity=0.076 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCe--EEEEEccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKY--VITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~--vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
++.+||.++.++.+.-.|+.+|++. ...+.. ..+...+-..+.. .++-|+.+.+|+-||...-.++-+..++....
T Consensus 83 dgskVf~g~~Dk~~k~wDL~S~Q~~-~v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvY 160 (347)
T KOG0647|consen 83 DGSKVFSGGCDKQAKLWDLASGQVS-QVAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVY 160 (347)
T ss_pred CCceEEeeccCCceEEEEccCCCee-eeeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceee
Confidence 5677999999999999999999652 222211 1233332112222 33436668899999999988888888876544
Q ss_pred cCCceeecccccccCCcEEEE-EeCCEEEEEECCCCcEeE
Q 002016 130 SKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILW 168 (981)
Q Consensus 130 s~~~~~v~~~~~~~~~~~V~V-~~~g~l~aLd~~tG~~~W 168 (981)
.+.+. ....+| ..+..+..+++++|-..-
T Consensus 161 --a~Dv~--------~pm~vVata~r~i~vynL~n~~te~ 190 (347)
T KOG0647|consen 161 --AADVL--------YPMAVVATAERHIAVYNLENPPTEF 190 (347)
T ss_pred --ehhcc--------CceeEEEecCCcEEEEEcCCCcchh
Confidence 11111 223333 468889999998886543
No 157
>PRK04792 tolB translocation protein TolB; Provisional
Probab=51.57 E-value=4.9e+02 Score=31.01 Aligned_cols=150 Identities=10% Similarity=0.081 Sum_probs=71.7
Q ss_pred ecCeEEEEEcc--CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee-CC--EEEEEECCCCcEe
Q 002016 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KG--CLHAVSSIDGEIL 167 (981)
Q Consensus 94 ~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~-~g--~l~aLd~~tG~~~ 167 (981)
.++.+++++.. ...++.+|..+|+..--....+.. ....+.| + ++.+++ .. +| .|+.+|.++|+..
T Consensus 228 DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~--~~~~wSP-----D-G~~La~~~~~~g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 228 DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGIN--GAPRFSP-----D-GKKLALVLSKDGQPEIYVVDIATKALT 299 (448)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCc--CCeeECC-----C-CCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence 45567776532 247999999999764322222111 1111221 2 333443 33 44 5999999888642
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCC-
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRS- 246 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g- 246 (981)
........ ......+.++..+++.+..++ ...++.+|+.+|+...- +..... .........+..+++.....+
T Consensus 300 -~lt~~~~~--~~~p~wSpDG~~I~f~s~~~g-~~~Iy~~dl~~g~~~~L-t~~g~~-~~~~~~SpDG~~l~~~~~~~g~ 373 (448)
T PRK04792 300 -RITRHRAI--DTEPSWHPDGKSLIFTSERGG-KPQIYRVNLASGKVSRL-TFEGEQ-NLGGSITPDGRSMIMVNRTNGK 373 (448)
T ss_pred -ECccCCCC--ccceEECCCCCEEEEEECCCC-CceEEEEECCCCCEEEE-ecCCCC-CcCeeECCCCCEEEEEEecCCc
Confidence 11111111 111111345555665544332 24689999998875321 111111 111111123345555543333
Q ss_pred -eEEEEEeecCe
Q 002016 247 -ILVTVSFKNRK 257 (981)
Q Consensus 247 -~L~v~~L~sg~ 257 (981)
.++..++.+|.
T Consensus 374 ~~I~~~dl~~g~ 385 (448)
T PRK04792 374 FNIARQDLETGA 385 (448)
T ss_pred eEEEEEECCCCC
Confidence 46667777775
No 158
>PRK03629 tolB translocation protein TolB; Provisional
Probab=51.39 E-value=4.8e+02 Score=30.85 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=71.0
Q ss_pred ecCeEEEEEc--cCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee-CC--EEEEEECCCCcEe
Q 002016 94 LGKYVITLSS--DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KG--CLHAVSSIDGEIL 167 (981)
Q Consensus 94 ~~~~vV~Vs~--~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~-~g--~l~aLd~~tG~~~ 167 (981)
.|..+++++. .+..++.||..+|+..--....+.. ....+-| + +..+++ .. +| .|+.+|.++|+..
T Consensus 209 DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~--~~~~~SP-----D-G~~La~~~~~~g~~~I~~~d~~tg~~~ 280 (429)
T PRK03629 209 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN--GAPAFSP-----D-GSKLAFALSKTGSLNLYVMDLASGQIR 280 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc--CCeEECC-----C-CCEEEEEEcCCCCcEEEEEECCCCCEE
Confidence 4556777653 2357999999988754332222211 1112221 2 333443 32 33 6888998888753
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEE-EcCcEEEEEECCC-
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVAL-VSSDTLVTLDTTR- 245 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~-vg~~~lv~~d~~~- 245 (981)
=-....... .....+.++..+++.+..++ ...++.+|+.+|+... +.........+.+ ..+..++.....+
T Consensus 281 ~lt~~~~~~---~~~~wSPDG~~I~f~s~~~g-~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~SpDG~~Ia~~~~~~g 353 (429)
T PRK03629 281 QVTDGRSNN---TEPTWFPDSQNLAYTSDQAG-RPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMVSSNGG 353 (429)
T ss_pred EccCCCCCc---CceEECCCCCEEEEEeCCCC-CceEEEEECCCCCeEE---eecCCCCccCEEECCCCCEEEEEEccCC
Confidence 211111111 11112345555655554332 2468888998886531 1111111111111 1334455444332
Q ss_pred -CeEEEEEeecCe
Q 002016 246 -SILVTVSFKNRK 257 (981)
Q Consensus 246 -g~L~v~~L~sg~ 257 (981)
..+++.++.+|.
T Consensus 354 ~~~I~~~dl~~g~ 366 (429)
T PRK03629 354 QQHIAKQDLATGG 366 (429)
T ss_pred CceEEEEECCCCC
Confidence 346777777765
No 159
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=48.93 E-value=3.4e+02 Score=31.40 Aligned_cols=175 Identities=15% Similarity=0.219 Sum_probs=89.5
Q ss_pred cccccc---cccEeEEEec---------cCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCC-ccee
Q 002016 22 SLYEDQ---VGLMDWHQQY---------IGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVD 88 (981)
Q Consensus 22 Alyedq---vG~~dW~~~~---------vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~ 88 (981)
||++.. -.+..||-.+ +|=++...++ | .+.-...++.++.+.-.|.+||++.=. |..- ..+.
T Consensus 123 aL~~k~~~~~~rPeWHapwKl~rVi~gHlgWVr~vavd-P--~n~wf~tgs~DrtikIwDlatg~Lklt--ltGhi~~vr 197 (460)
T KOG0285|consen 123 ALMEKKASRMPRPEWHAPWKLYRVISGHLGWVRSVAVD-P--GNEWFATGSADRTIKIWDLATGQLKLT--LTGHIETVR 197 (460)
T ss_pred hhhhhccccCCCccccCcceehhhhhhccceEEEEeeC-C--CceeEEecCCCceeEEEEcccCeEEEe--ecchhheee
Confidence 555433 3567888764 2333333343 2 244467778899999999999986543 3221 1223
Q ss_pred eeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcE
Q 002016 89 GIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEI 166 (981)
Q Consensus 89 ~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~ 166 (981)
++.+..-.--++-.+.+++|..||.++-+.+-++...-..+ ..+.+-| . .+ |++. .|......|..+-..
T Consensus 198 ~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V-~~L~lhP----T--ld-vl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 198 GVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGV-YCLDLHP----T--LD-VLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeeecccCceEEEecCCCeeEEEechhhhhHHHhcccccee-EEEeccc----c--ce-eEEecCCcceEEEeeecccce
Confidence 44111122233335678899999999999988877653221 1111111 1 22 4443 255555555555444
Q ss_pred eEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCcee
Q 002016 167 LWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL 215 (981)
Q Consensus 167 ~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~l 215 (981)
+-....-... ..++.--..+..||-.+.++ .+---|...|+..
T Consensus 270 V~~l~GH~~~--V~~V~~~~~dpqvit~S~D~----tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 270 VHVLSGHTNP--VASVMCQPTDPQVITGSHDS----TVRLWDLRAGKTM 312 (460)
T ss_pred EEEecCCCCc--ceeEEeecCCCceEEecCCc----eEEEeeeccCcee
Confidence 4443321111 22222122455565544443 2444566666554
No 160
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=48.26 E-value=6.1e+02 Score=31.20 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=98.2
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEE-ccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLS-SDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs-~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
++.++.++.+..+.-=|.++|+-.=-...... .+..+ ... +.+.++ +.+.+|++||..+|+.+=-.....+.+
T Consensus 261 ~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s-tv~~~--~~~-~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V-- 334 (537)
T KOG0274|consen 261 GDKLVSGSTDKTERVWDCSTGECTHSLQGHTS-SVRCL--TID-PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPV-- 334 (537)
T ss_pred CCEEEEEecCCcEEeEecCCCcEEEEecCCCc-eEEEE--Ecc-CceEeeccCCceEEEEeccCcceEEEeccccccE--
Confidence 56677777777777777777764333221111 11111 223 344444 457899999999999886666433222
Q ss_pred CceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecC-CeEEEEEecCCceeEEEEEEC
Q 002016 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDES-DQIYVVGYAGSSQFHAYQINA 209 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~-~~Vyvvg~~g~~~~~v~aLd~ 209 (981)
--+ ...++.++.. .||.+...|..+|+.+=+.+.-.... ..+. .+. ..+|-.++++ .+-+-|+
T Consensus 335 --~~v-----~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V--~sl~--~~~~~~~~Sgs~D~----~IkvWdl 399 (537)
T KOG0274|consen 335 --NCV-----QLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV--YSLI--VDSENRLLSGSLDT----TIKVWDL 399 (537)
T ss_pred --EEE-----EecCCEEEEEecCceEEEEEhhhceeeeeecCCcceE--EEEE--ecCcceEEeeeecc----ceEeecC
Confidence 111 1224444444 48899999999888887766533332 2221 233 5555544544 3677777
Q ss_pred CCCc-eeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeecCe
Q 002016 210 MNGE-LLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRK 257 (981)
Q Consensus 210 ~tG~-~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~ 257 (981)
.++. .+-.. ..+..+. ..+..-++.+++-.. .+.+++-|.+++.
T Consensus 400 ~~~~~c~~tl--~~h~~~v-~~l~~~~~~Lvs~~a-D~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 400 RTKRKCIHTL--QGHTSLV-SSLLLRDNFLVSSSA-DGTIKLWDAEEGE 444 (537)
T ss_pred Cchhhhhhhh--cCCcccc-cccccccceeEeccc-cccEEEeecccCc
Confidence 7773 32222 1111111 112223456666543 4677777877776
No 161
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=48.00 E-value=1.8e+02 Score=34.53 Aligned_cols=73 Identities=12% Similarity=0.216 Sum_probs=55.5
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEecc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~ 125 (981)
.+.....++-+..|---|.+||+..=|..++......-++ +.+..++++|+.+++++.||..+|+++=++.-.
T Consensus 269 ~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~-pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~h 341 (503)
T KOG0282|consen 269 CGTSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFH-PDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRH 341 (503)
T ss_pred cCCeeeeeecceeeeeeccccceEEEEEecCCCceeeecC-CCCCcEEEEecCCCcEEEEeccchHHHHHHHhh
Confidence 4556888999999999999999999998886542211121 234578888888889999999999987666544
No 162
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=47.58 E-value=5e+02 Score=29.97 Aligned_cols=149 Identities=15% Similarity=0.153 Sum_probs=70.2
Q ss_pred ecCeEEEEEcc--CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee---CCEEEEEECCCCcEe
Q 002016 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS---KGCLHAVSSIDGEIL 167 (981)
Q Consensus 94 ~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~---~g~l~aLd~~tG~~~ 167 (981)
.+..+++++.. ...++.||..+|+..--........ ...+.| + ++.+++ .. +..++.+|..+|...
T Consensus 200 dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~--~~~~sp-----D-g~~l~~~~~~~~~~~i~~~d~~~~~~~ 271 (417)
T TIGR02800 200 DGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG--APAFSP-----D-GSKLAVSLSKDGNPDIYVMDLDGKQLT 271 (417)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc--ceEECC-----C-CCEEEEEECCCCCccEEEEECCCCCEE
Confidence 45556665432 2579999999997654433332211 111211 2 333443 32 346888998887642
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEE-cCcEEEEEECCC-
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTR- 245 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~v-g~~~lv~~d~~~- 245 (981)
=-.........+ .. +.++..+++.+..++ ...++.+|+.+|+.. ++.....-.....+. .+..+++.+...
T Consensus 272 ~l~~~~~~~~~~-~~--s~dg~~l~~~s~~~g-~~~iy~~d~~~~~~~---~l~~~~~~~~~~~~spdg~~i~~~~~~~~ 344 (417)
T TIGR02800 272 RLTNGPGIDTEP-SW--SPDGKSIAFTSDRGG-SPQIYMMDADGGEVR---RLTFRGGYNASPSWSPDGDLIAFVHREGG 344 (417)
T ss_pred ECCCCCCCCCCE-EE--CCCCCEEEEEECCCC-CceEEEEECCCCCEE---EeecCCCCccCeEECCCCCEEEEEEccCC
Confidence 111111111111 11 234555655554333 236888898888743 111111111112221 334555554332
Q ss_pred -CeEEEEEeecCe
Q 002016 246 -SILVTVSFKNRK 257 (981)
Q Consensus 246 -g~L~v~~L~sg~ 257 (981)
..+++.++.++.
T Consensus 345 ~~~i~~~d~~~~~ 357 (417)
T TIGR02800 345 GFNIAVMDLDGGG 357 (417)
T ss_pred ceEEEEEeCCCCC
Confidence 256777776654
No 163
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=46.89 E-value=2.8e+02 Score=26.80 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=48.0
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCc
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~ 127 (981)
.+.|+|+|++..|..++ ..++++...-... +..+.....+...| +-..|+|-.++. ...+|+.+-...
T Consensus 15 ~~eLlvGs~D~~IRvf~--~~e~~~Ei~e~~~--v~~L~~~~~~~F~Y-~l~NGTVGvY~~--~~RlWRiKSK~~ 82 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFK--GDEIVAEITETDK--VTSLCSLGGGRFAY-ALANGTVGVYDR--SQRLWRIKSKNQ 82 (111)
T ss_pred cceEEEecCCcEEEEEe--CCcEEEEEecccc--eEEEEEcCCCEEEE-EecCCEEEEEeC--cceeeeeccCCC
Confidence 46699999999999997 5688888765443 44442223344445 555579999975 889999986554
No 164
>PRK01742 tolB translocation protein TolB; Provisional
Probab=46.81 E-value=5.5e+02 Score=30.24 Aligned_cols=143 Identities=11% Similarity=0.048 Sum_probs=65.4
Q ss_pred CCCEEEEEcC---CCEEEEEECCCCccceEEEcCCCcceeeeee-eecCeEEEEEccCC--EEEEEeCCCCcEeEEEecc
Q 002016 52 GRKRVVVSTE---ENVIASLDLRHGEIFWRHVLGINDVVDGIDI-ALGKYVITLSSDGS--TLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 52 ~~~~VyvaT~---~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~-~~~~~vV~Vs~~g~--~V~A~da~tG~llWe~~~~ 125 (981)
++++++.++. ...|+.+|.++|+..--..++.. ...... +.+..+++.+..++ .++.||..+|...= ....
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~--~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~-lt~~ 290 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH--NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQ-LTSG 290 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc--cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEe-eccC
Confidence 4556655543 24799999999874322222221 111111 23444555443333 47788887776431 1111
Q ss_pred CccccCCceeecccccccCCcEEEEEe--C--CEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCce
Q 002016 126 GSKHSKPLLLVPTNLKVDKDSLILVSS--K--GCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 126 ~~~~s~~~~~v~~~~~~~~~~~V~V~~--~--g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
.... ....+.| + +..+++.+ + -.++.++..+|..... . ... . ....+.++..+++.+..
T Consensus 291 ~~~~-~~~~wSp-----D-G~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~~~-~---~~~~SpDG~~ia~~~~~---- 353 (429)
T PRK01742 291 AGNN-TEPSWSP-----D-GQSILFTSDRSGSPQVYRMSASGGGASLV-G-GRG-Y---SAQISADGKTLVMINGD---- 353 (429)
T ss_pred CCCc-CCEEECC-----C-CCEEEEEECCCCCceEEEEECCCCCeEEe-c-CCC-C---CccCCCCCCEEEEEcCC----
Confidence 1111 1111211 1 23333322 2 3566677666654332 1 111 1 11113455556554432
Q ss_pred eEEEEEECCCCcee
Q 002016 202 FHAYQINAMNGELL 215 (981)
Q Consensus 202 ~~v~aLd~~tG~~l 215 (981)
.+..+|+.+|+..
T Consensus 354 -~i~~~Dl~~g~~~ 366 (429)
T PRK01742 354 -NVVKQDLTSGSTE 366 (429)
T ss_pred -CEEEEECCCCCeE
Confidence 2666899999753
No 165
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=46.76 E-value=4.3e+02 Score=29.04 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=38.3
Q ss_pred CCCEEEEEc-CCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEcc-CCEEEEEeC
Q 002016 52 GRKRVVVST-EENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD-GSTLRAWNL 113 (981)
Q Consensus 52 ~~~~VyvaT-~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~-g~~V~A~da 113 (981)
+.+++|+.+ +.+.|+.||. +|+++-|..+...+...++ ...+++.++++.. .+.++.++.
T Consensus 32 d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI-~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 32 DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGI-TYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEE-EE-STTEEEEEETTTTEEEEEEE
T ss_pred CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeE-EEECCCEEEEEEcCCCcEEEEEE
Confidence 457777665 5589999996 7999999998764334455 3456667766553 567777776
No 166
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=45.74 E-value=41 Score=37.51 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=45.7
Q ss_pred CCEEEEEcCCCEEEEEECC-CCccceEEEc-CCCc--ceeeeeeeecCeEEEEEccCCEEEEEeCC-CCcEeEEEec
Q 002016 53 RKRVVVSTEENVIASLDLR-HGEIFWRHVL-GIND--VVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWESFL 124 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~-tG~ivWR~~l-~~~~--~i~~l~~~~~~~vV~Vs~~g~~V~A~da~-tG~llWe~~~ 124 (981)
.+.||.+++++.+.+.|.+ .++-+|+..- ...+ .|..- + .....++.|+.+..++.||.. =|+++-+..+
T Consensus 178 pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss-~-~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v 252 (339)
T KOG0280|consen 178 PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSS-P-PKPTYIATGSYDECIRVLDTRNMGKPLFKAKV 252 (339)
T ss_pred CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecC-C-CCCceEEEeccccceeeeehhcccCccccCcc
Confidence 3669999999999999999 8888998332 2211 11111 1 123355658888899999975 4555544433
No 167
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=45.56 E-value=2.7e+02 Score=31.90 Aligned_cols=100 Identities=19% Similarity=0.341 Sum_probs=53.7
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-EeCCEEEEEECCCCcEeEEEecc
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
.+.+++-|+.+.+|+.||-+||+++=..-..- +.++-+ +++|.+..-+..---.+|....+
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHc------------------eaVLhlrf~ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHC------------------EAVLHLRFSNGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhc------------------ceeEEEEEeCCEEEEecCCceeEEEeccCc
Confidence 34433334567899999999998873322221 111222 35666666665555678988776
Q ss_pred CcceeeeEE-------EEe-ecCCeEEEEEecCCceeEEEEEECCCCceee
Q 002016 174 AESVEVQQV-------IQL-DESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (981)
Q Consensus 174 ~~~~~~~~v-------v~s-~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw 216 (981)
.... ..++ +-+ ..++. |+++..|.. .+-.-+..||+-+-
T Consensus 308 s~it-~rrVLvGHrAaVNvVdfd~k-yIVsASgDR--TikvW~~st~efvR 354 (499)
T KOG0281|consen 308 TDIT-LRRVLVGHRAAVNVVDFDDK-YIVSASGDR--TIKVWSTSTCEFVR 354 (499)
T ss_pred hHHH-HHHHHhhhhhheeeeccccc-eEEEecCCc--eEEEEeccceeeeh
Confidence 5321 1111 111 22333 666666643 34445666666553
No 168
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=44.71 E-value=1.7e+02 Score=36.55 Aligned_cols=68 Identities=16% Similarity=0.167 Sum_probs=41.8
Q ss_pred EEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEecc
Q 002016 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 98 vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
-+.-|+.+.+||.||..+|..+--+......+ ..+.+. ..|.-++. .+|.+.-.|..+|+++=+....
T Consensus 549 Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V-~al~~S-------p~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H 618 (707)
T KOG0263|consen 549 YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPV-TALAFS-------PCGRYLASGDEDGLIKIWDLANGSLVKQLKGH 618 (707)
T ss_pred ccccCCCCceEEEEEcCCCcEEEEecCCCCce-EEEEEc-------CCCceEeecccCCcEEEEEcCCCcchhhhhcc
Confidence 33335667899999999999987776554332 111111 13333332 3788888888888776655444
No 169
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.89 E-value=38 Score=38.95 Aligned_cols=73 Identities=14% Similarity=0.247 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEec
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~ 124 (981)
+++.||+++..|.|+++|.+.|+..=+.-=+-.+++.+++...+..++.-+|-++.||-+|..|-+++-...+
T Consensus 258 ~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 258 SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 5677999999999999999999865442111112344443223334565566689999999998666654443
No 170
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=43.59 E-value=5.7e+02 Score=29.50 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=90.2
Q ss_pred EEEEEcCC-----C-EEEEEECCCCccceEEEc-CCCcceeeeeeeecCeEEEE-Ecc--CCE--EEEEeCCCCcEeEEE
Q 002016 55 RVVVSTEE-----N-VIASLDLRHGEIFWRHVL-GINDVVDGIDIALGKYVITL-SSD--GST--LRAWNLPDGQMVWES 122 (981)
Q Consensus 55 ~VyvaT~~-----g-~L~ALd~~tG~ivWR~~l-~~~~~i~~l~~~~~~~vV~V-s~~--g~~--V~A~da~tG~llWe~ 122 (981)
.+|++|.. | .+.-||.++|++ |-.++ .......-+...-.+..+++ -.. .+. .+.||..+|++---.
T Consensus 4 ~~YiGtyT~~~s~gI~v~~ld~~~g~l-~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln 82 (346)
T COG2706 4 TVYIGTYTKRESQGIYVFNLDTKTGEL-SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN 82 (346)
T ss_pred EEEEeeecccCCCceEEEEEeCccccc-chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee
Confidence 46777654 2 355666667764 33332 22222222211123334443 222 233 466777789887766
Q ss_pred eccCccccCCceeecccccccCC-cEEEEE--eCCEEEEEECC-CCcEeEE---EeccCcceeeeEEE------Ee-ecC
Q 002016 123 FLRGSKHSKPLLLVPTNLKVDKD-SLILVS--SKGCLHAVSSI-DGEILWT---RDFAAESVEVQQVI------QL-DES 188 (981)
Q Consensus 123 ~~~~~~~s~~~~~v~~~~~~~~~-~~V~V~--~~g~l~aLd~~-tG~~~W~---~~~~~~~~~~~~vv------~s-~~~ 188 (981)
+...+. .+++.+. .+.+ ..|++. ..|.+..+-.+ +|.+.=. .....+.-..+|.. .. ..+
T Consensus 83 ~~~~~g--~~p~yvs----vd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 83 RQTLPG--SPPCYVS----VDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG 156 (346)
T ss_pred ccccCC--CCCeEEE----ECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC
Confidence 554332 1223331 2333 367775 47777777663 3654321 11111100022221 11 233
Q ss_pred CeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEE--cCcEEEEEECCCCeEEEEEeec
Q 002016 189 DQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV--SSDTLVTLDTTRSILVTVSFKN 255 (981)
Q Consensus 189 ~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~v--g~~~lv~~d~~~g~L~v~~L~s 255 (981)
..+++..+ |.. +++.+++..|...-......+.+.-...++- .+.+.+|+..-++.+-+.....
T Consensus 157 ~~l~v~DL-G~D--ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~ 222 (346)
T COG2706 157 RYLVVPDL-GTD--RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNP 222 (346)
T ss_pred CEEEEeec-CCc--eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcC
Confidence 45555444 433 4677777788876544333332222233332 4456666665566776666665
No 171
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=43.37 E-value=6e+02 Score=29.86 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=38.1
Q ss_pred ecCeEEEEEcc--CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEE-EEEeCCEEEEEECCCCcEeEEE
Q 002016 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLI-LVSSKGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 94 ~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V-~V~~~g~l~aLd~~tG~~~W~~ 170 (981)
.|..+++.|.. ..+++.+|.++|+..==+...+... .+..+. .+++.+ ++..+..|.++|.+|++..=-+
T Consensus 46 dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~-~g~~~s------~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy 118 (386)
T PF14583_consen 46 DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT-FGGFLS------PDDRALYYVKNGRSLRRVDLDTLEERVVY 118 (386)
T ss_dssp TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T-TT-EE-------TTSSEEEEEETTTEEEEEETTT--EEEEE
T ss_pred CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCc-cceEEe------cCCCeEEEEECCCeEEEEECCcCcEEEEE
Confidence 45567776542 4789999999999873333222211 122222 223444 4445679999999999876555
Q ss_pred eccCc
Q 002016 171 DFAAE 175 (981)
Q Consensus 171 ~~~~~ 175 (981)
..+..
T Consensus 119 ~~p~~ 123 (386)
T PF14583_consen 119 EVPDD 123 (386)
T ss_dssp E--TT
T ss_pred ECCcc
Confidence 55543
No 172
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=43.02 E-value=6.5e+02 Score=30.02 Aligned_cols=135 Identities=12% Similarity=0.087 Sum_probs=67.7
Q ss_pred EEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEE-EccCCEEEEEeCCC-------CcEeEEEeccC
Q 002016 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SSDGSTLRAWNLPD-------GQMVWESFLRG 126 (981)
Q Consensus 55 ~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~V-s~~g~~V~A~da~t-------G~llWe~~~~~ 126 (981)
.|+.+|..|.||.--..||+.+--..--. -++..+. ..+++-+++ ++.++.|++|+..+ +...=......
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~aHY-Q~ITcL~-fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~ 172 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLSAHY-QSITCLK-FSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD 172 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHHhhc-cceeEEE-EeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc
Confidence 36666699999999999998764321111 1344552 345554444 55678999997532 11111111111
Q ss_pred cccc-CCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecC
Q 002016 127 SKHS-KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (981)
Q Consensus 127 ~~~s-~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g 198 (981)
-.++ .+. .++. + .-+..++-. -|..+...|...|.++=+...+.... .+..-.++..+|+.+-.|
T Consensus 173 HtlsITDl-~ig~-G--g~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~---av~lDpae~~~yiGt~~G 239 (476)
T KOG0646|consen 173 HTLSITDL-QIGS-G--GTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK---AVALDPAERVVYIGTEEG 239 (476)
T ss_pred CcceeEEE-EecC-C--CccceEEEecCCceEEEEEeccceeeEEEecCCcce---eEEEcccccEEEecCCcc
Confidence 0110 011 1100 0 012234443 37777888888888877776664322 222123455566543333
No 173
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=42.89 E-value=1.4e+02 Score=36.02 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=59.8
Q ss_pred CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccC-ceE
Q 002016 153 KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-DVA 231 (981)
Q Consensus 153 ~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~-~~~ 231 (981)
-|.|..+|+.+|+++-+-....-+. +.+ ....++.|.+.+..|...++|+-||+.|=++..+... .++. +++
T Consensus 374 ls~LvllD~~tg~~l~~S~~~~Ir~--r~~-~~~~~~~vaI~g~~G~~~ikLvlid~~tLev~kes~~----~i~~~S~l 446 (489)
T PF05262_consen 374 LSELVLLDSDTGDTLKRSPVNGIRG--RTF-YEREDDLVAIAGCSGNAAIKLVLIDPETLEVKKESED----EISWQSSL 446 (489)
T ss_pred ceeEEEEeCCCCceecccccceecc--cee-EEcCCCEEEEeccCCchheEEEecCcccceeeeeccc----cccccCce
Confidence 4789999999999887654432221 112 2234555555445565678899899999888877633 2332 455
Q ss_pred EE-cCcEEEEEECCCCeEEEEEeecC
Q 002016 232 LV-SSDTLVTLDTTRSILVTVSFKNR 256 (981)
Q Consensus 232 ~v-g~~~lv~~d~~~g~L~v~~L~sg 256 (981)
++ |+.+++++...+|..+..-+.++
T Consensus 447 ~~~~~~iyaVv~~~~g~~~L~rF~~~ 472 (489)
T PF05262_consen 447 IVDGQMIYAVVKKDNGKWYLGRFDSN 472 (489)
T ss_pred EEcCCeEEEEEEcCCCeEEEeecCcc
Confidence 55 55566666346677666665543
No 174
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=42.83 E-value=6.5e+02 Score=30.00 Aligned_cols=31 Identities=16% Similarity=0.137 Sum_probs=21.9
Q ss_pred ecCeEEEEEc-cCCEEEEEeCCCCcEeEEEec
Q 002016 94 LGKYVITLSS-DGSTLRAWNLPDGQMVWESFL 124 (981)
Q Consensus 94 ~~~~vV~Vs~-~g~~V~A~da~tG~llWe~~~ 124 (981)
...+.++++| ..+.++-|..++|.++=-...
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a 121 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSA 121 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHh
Confidence 4445555544 678999999999999855443
No 175
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=41.34 E-value=1.1e+03 Score=31.97 Aligned_cols=67 Identities=9% Similarity=-0.018 Sum_probs=43.5
Q ss_pred eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCcee--eeeeeec
Q 002016 152 SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELL--NHETAAF 222 (981)
Q Consensus 152 ~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~l--w~~~v~~ 222 (981)
..+++..+|...-...|+.+.+...-....+. ....+...++|..+| .+...|++=+.++ |+....+
T Consensus 1171 ~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~-idp~~~WlviGts~G---~l~lWDLRF~~~i~sw~~P~~~ 1239 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIV-IDPWCNWLVIGTSRG---QLVLWDLRFRVPILSWEHPARA 1239 (1431)
T ss_pred eccceEEecchhhhhHHhhhcCccccceeEEE-ecCCceEEEEecCCc---eEEEEEeecCceeecccCcccC
Confidence 58889999999888999887753221111221 123445666666554 6888999988887 7664433
No 176
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=40.07 E-value=6e+02 Score=28.80 Aligned_cols=169 Identities=17% Similarity=0.270 Sum_probs=74.2
Q ss_pred cccccccccccEeEEEeccCceeeeeeeecccCCCEEEEEcCCCEEE-EEECCCCccceEEEcCC-CcceeeeeeeecCe
Q 002016 20 SLSLYEDQVGLMDWHQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIA-SLDLRHGEIFWRHVLGI-NDVVDGIDIALGKY 97 (981)
Q Consensus 20 ~~AlyedqvG~~dW~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~-ALd~~tG~ivWR~~l~~-~~~i~~l~~~~~~~ 97 (981)
.-++|...-|-..|+...-+... .........++++++.+..|.++ ..| .|+-.|+..-.. ...+..+....++.
T Consensus 123 ~G~iy~T~DgG~tW~~~~~~~~g-s~~~~~r~~dG~~vavs~~G~~~~s~~--~G~~~w~~~~r~~~~riq~~gf~~~~~ 199 (302)
T PF14870_consen 123 RGAIYRTTDGGKTWQAVVSETSG-SINDITRSSDGRYVAVSSRGNFYSSWD--PGQTTWQPHNRNSSRRIQSMGFSPDGN 199 (302)
T ss_dssp T--EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE---TT-SS-EEEE--SSS-EEEEEE-TTS-
T ss_pred CCcEEEeCCCCCCeeEcccCCcc-eeEeEEECCCCcEEEEECcccEEEEec--CCCccceEEccCccceehhceecCCCC
Confidence 34778766677789876644332 22222223466666566665554 555 698899965432 23344331123344
Q ss_pred EEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcc
Q 002016 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES 176 (981)
Q Consensus 98 vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~ 176 (981)
+..++ .|+.++-=+..+...-|+........ ..-.++-. .-..++.+++. .+|.|+ -..+|-.-|+.......
T Consensus 200 lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~-~~~~~ld~--a~~~~~~~wa~gg~G~l~--~S~DgGktW~~~~~~~~ 273 (302)
T PF14870_consen 200 LWMLA-RGGQIQFSDDPDDGETWSEPIIPIKT-NGYGILDL--AYRPPNEIWAVGGSGTLL--VSTDGGKTWQKDRVGEN 273 (302)
T ss_dssp EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS---S-EEEE--EESSSS-EEEEESTT-EE--EESSTTSS-EE-GGGTT
T ss_pred EEEEe-CCcEEEEccCCCCccccccccCCccc-CceeeEEE--EecCCCCEEEEeCCccEE--EeCCCCccceECccccC
Confidence 44444 56788888866778888876543311 11111100 01123446665 455443 34667778998765332
Q ss_pred e--eeeEEEEeecCCeEEEEEecC
Q 002016 177 V--EVQQVIQLDESDQIYVVGYAG 198 (981)
Q Consensus 177 ~--~~~~vv~s~~~~~Vyvvg~~g 198 (981)
. .++.++- ..++.-|++|..|
T Consensus 274 ~~~n~~~i~f-~~~~~gf~lG~~G 296 (302)
T PF14870_consen 274 VPSNLYRIVF-VNPDKGFVLGQDG 296 (302)
T ss_dssp SSS---EEEE-EETTEEEEE-STT
T ss_pred CCCceEEEEE-cCCCceEEECCCc
Confidence 2 2344432 3556777777665
No 177
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=39.71 E-value=6.5e+02 Score=29.08 Aligned_cols=190 Identities=9% Similarity=0.083 Sum_probs=106.5
Q ss_pred CEEEEEcC-----CCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEE-Ec------cC---CEEEEEeCCCCcE
Q 002016 54 KRVVVSTE-----ENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITL-SS------DG---STLRAWNLPDGQM 118 (981)
Q Consensus 54 ~~VyvaT~-----~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~V-s~------~g---~~V~A~da~tG~l 118 (981)
.+|||.+. .+.++-+|+.+|+.+=.....-.. ....+-++..+++ ++ .| ..|..||..|=.+
T Consensus 3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~---~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~ 79 (342)
T PF06433_consen 3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLG---NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSP 79 (342)
T ss_dssp TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSE---EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEE
T ss_pred cEEEEECCccccccceEEEEECCCCcEEEEeecccCC---ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcc
Confidence 35666553 246777888887754333221111 1101222333332 21 11 3589999999999
Q ss_pred eEEEeccCc-cccCCceeecccccccCCcEEEEEe---CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEE
Q 002016 119 VWESFLRGS-KHSKPLLLVPTNLKVDKDSLILVSS---KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVV 194 (981)
Q Consensus 119 lWe~~~~~~-~~s~~~~~v~~~~~~~~~~~V~V~~---~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvv 194 (981)
.||..++.. -. ...+..........++.++|.. ...|..+|.+.++++=+.+.+.=.. +.+ ..+...+.+
T Consensus 80 ~~EI~iP~k~R~-~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~----iyP-~~~~~F~~l 153 (342)
T PF06433_consen 80 TGEIEIPPKPRA-QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWL----IYP-SGNRGFSML 153 (342)
T ss_dssp EEEEEETTS-B---BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEE----EEE-EETTEEEEE
T ss_pred cceEecCCcchh-eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEE----EEe-cCCCceEEE
Confidence 999999864 11 1111111111123467888853 7899999999999998777664222 222 355678877
Q ss_pred EecCCceeEEEEEECCCCceeeeeeeeccCCccC-----ceEEE-cCcEEEEEECCCCeEEEEEeecCee
Q 002016 195 GYAGSSQFHAYQINAMNGELLNHETAAFSGGFVG-----DVALV-SSDTLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 195 g~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~-----~~~~v-g~~~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
|-+|+ +..+.|| ..|+.. +..- ....... ...++ .++.++++. ++|.++..++.....
T Consensus 154 C~DGs--l~~v~Ld-~~Gk~~-~~~t-~~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~ 217 (342)
T PF06433_consen 154 CGDGS--LLTVTLD-ADGKEA-QKST-KVFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSA 217 (342)
T ss_dssp ETTSC--EEEEEET-STSSEE-EEEE-EESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSE
T ss_pred ecCCc--eEEEEEC-CCCCEe-Eeec-cccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcc
Confidence 87774 3344455 378887 3321 1222222 22333 345777775 689999999987664
No 178
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=39.36 E-value=4.3e+02 Score=34.65 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=23.8
Q ss_pred eEEEEEccCCEEEEEeCCCCcEeEEEe
Q 002016 97 YVITLSSDGSTLRAWNLPDGQMVWESF 123 (981)
Q Consensus 97 ~vV~Vs~~g~~V~A~da~tG~llWe~~ 123 (981)
-.|+|+..+|.++|||+++|..+.-+-
T Consensus 583 ~~VyvgandGmLhaFd~~tG~E~fA~~ 609 (1036)
T COG3419 583 PVVYVGANDGMLHAFDANTGSERFAYV 609 (1036)
T ss_pred ceEEEecCCceeeeccCCccceeeecC
Confidence 478889888999999999999998765
No 179
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=39.17 E-value=7.3e+02 Score=29.52 Aligned_cols=82 Identities=7% Similarity=0.082 Sum_probs=48.6
Q ss_pred EEEEccCCeEEEEEEeecCCCcccc----------ccceeeeEeEEEEccCCcceEEEEeecCCCCceecceEecCCCce
Q 002016 631 YSVEADNGIIKGHAVKSKCAGEVLD----------DFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDV 700 (981)
Q Consensus 631 ~~~~~~~~~i~G~~~~~~~~~~~~~----------~~~~~~~~~W~~~~~~~~e~Iv~~~~~~~~e~v~S~g~vlgdrsV 700 (981)
|++-..+..|+.|+.+.-..+...+ ...-+..+-|++++. |.|+.+..-+...
T Consensus 189 fvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlG---E~~l~i~v~~~~~-------------- 251 (418)
T PF14727_consen 189 FVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLG---EQALDIQVVRFSS-------------- 251 (418)
T ss_pred EEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECC---ceeEEEEEEEcCC--------------
Confidence 3344556799999975322110000 123355689999986 7788887543211
Q ss_pred EecccCCceEEEEEecCCCCCCcCCCCCCCcEEEEEEEEceeceEEEEEeec
Q 002016 701 MYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHH 752 (981)
Q Consensus 701 lYKYLNPNl~~v~t~~~~~~~~~~~~~~~~~~l~v~liD~VtG~il~s~~h~ 752 (981)
++.-+.|+.+. ++|+++. +|++.+.-+.+
T Consensus 252 -----~~~~IvvLger-----------------~Lf~l~~-~G~l~~~krLd 280 (418)
T PF14727_consen 252 -----SESDIVVLGER-----------------SLFCLKD-NGSLRFQKRLD 280 (418)
T ss_pred -----CCceEEEEecc-----------------eEEEEcC-CCeEEEEEecC
Confidence 44444444433 3788887 78888888773
No 180
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=38.43 E-value=4.9e+02 Score=34.33 Aligned_cols=136 Identities=9% Similarity=0.052 Sum_probs=67.6
Q ss_pred eEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcE-----eEEE
Q 002016 97 YVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEI-----LWTR 170 (981)
Q Consensus 97 ~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~-----~W~~ 170 (981)
+.++++|+-..||-||+..-...=.....++.+ +...+....+++.+++. .||.|..+|...-.+ .|+.
T Consensus 1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~-----vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~ 1252 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTL-----VTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE 1252 (1387)
T ss_pred CeEEecCCeeEEEEEecccceeEeecccCCCcc-----ceeecccccCCceEEEeecCCceEEeecccCCccccceeecc
Confidence 556667766789999987766665555544332 11122223445555554 799999999755433 5665
Q ss_pred eccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCcc--CceEEE--cCcEEEEEE
Q 002016 171 DFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFV--GDVALV--SSDTLVTLD 242 (981)
Q Consensus 171 ~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~--~~~~~v--g~~~lv~~d 242 (981)
....+.+.-..+- ...-+.++.++..| .+.-+|+..-....-.++..++.-. -.++.| -..+++|..
T Consensus 1253 h~~~~~Iv~~slq-~~G~~elvSgs~~G----~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1253 HNDVEPIVHLSLQ-RQGLGELVSGSQDG----DIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred cCCcccceeEEee-cCCCcceeeeccCC----eEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC
Confidence 4433222111111 01222344333334 4777787654222222333333111 123333 345666664
No 181
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=37.32 E-value=82 Score=23.59 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=24.3
Q ss_pred CCCEEEEEcC-CCEEEEEECCCCccceEEEcC
Q 002016 52 GRKRVVVSTE-ENVIASLDLRHGEIFWRHVLG 82 (981)
Q Consensus 52 ~~~~VyvaT~-~g~L~ALd~~tG~ivWR~~l~ 82 (981)
+++++|++.. .+.|..+|+++|+++=+....
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg 33 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPVG 33 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence 3667999885 689999999999876666553
No 182
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=37.31 E-value=2.5e+02 Score=32.96 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=63.3
Q ss_pred EEEcc-CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcce
Q 002016 100 TLSSD-GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESV 177 (981)
Q Consensus 100 ~Vs~~-g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~ 177 (981)
++|+. +.+||+||..++...-+.++.+-+. ++.+. ..+..|+.. -|..+-.+|..+-++.=.+....-..
T Consensus 315 ~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt--Sl~ls------~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~ 386 (459)
T KOG0288|consen 315 VISGHFDKKVRFWDIRSADKTRSVPLGGRVT--SLDLS------MDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKC 386 (459)
T ss_pred eeecccccceEEEeccCCceeeEeecCccee--eEeec------cCCeEEeeecCCCceeeeecccccEEEEeecccccc
Confidence 34664 6789999999999999998877443 22222 113334444 37788888888877776665542110
Q ss_pred --eeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 178 --EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 178 --~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
....++.++++..|-+ |+.++.|+.-+..+|+.....
T Consensus 387 asDwtrvvfSpd~~YvaA----GS~dgsv~iW~v~tgKlE~~l 425 (459)
T KOG0288|consen 387 ASDWTRVVFSPDGSYVAA----GSADGSVYIWSVFTGKLEKVL 425 (459)
T ss_pred ccccceeEECCCCceeee----ccCCCcEEEEEccCceEEEEe
Confidence 1112322333333333 323335888888888876555
No 183
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=36.39 E-value=2.3e+02 Score=27.06 Aligned_cols=59 Identities=29% Similarity=0.596 Sum_probs=37.7
Q ss_pred cCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-EeCCEEEEEECCCCcEeEEE
Q 002016 95 GKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SSKGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~~g~l~aLd~~tG~~~W~~ 170 (981)
+...+.+..+| .+..+|.. |+.+|......... . ....+. ..+|.|.-+| .+|+++|+-
T Consensus 19 ~~~~L~l~~dG-nLvl~~~~-~~~iWss~~t~~~~-------------~-~~~~~~L~~~GNlvl~d-~~~~~lW~S 78 (114)
T PF01453_consen 19 GNYTLILQSDG-NLVLYDSN-GSVIWSSNNTSGRG-------------N-SGCYLVLQDDGNLVLYD-SSGNVLWQS 78 (114)
T ss_dssp TTEEEEEETTS-EEEEEETT-TEEEEE--S-TTSS---------------SSEEEEEETTSEEEEEE-TTSEEEEES
T ss_pred ccccceECCCC-eEEEEcCC-CCEEEEecccCCcc-------------c-cCeEEEEeCCCCEEEEe-ecceEEEee
Confidence 55677777764 78888864 88899983222110 0 112233 3689999998 699999997
No 184
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=35.81 E-value=6.7e+02 Score=28.07 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=22.7
Q ss_pred EccCCEEEEEeCCCCcEeEEEeccCcc
Q 002016 102 SSDGSTLRAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 102 s~~g~~V~A~da~tG~llWe~~~~~~~ 128 (981)
++.+...+.||.++|+.+-.++...++
T Consensus 70 GSAD~t~kLWDv~tGk~la~~k~~~~V 96 (327)
T KOG0643|consen 70 GSADQTAKLWDVETGKQLATWKTNSPV 96 (327)
T ss_pred ccccceeEEEEcCCCcEEEEeecCCee
Confidence 555678999999999999999887654
No 185
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=35.33 E-value=6.8e+02 Score=28.01 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=86.0
Q ss_pred EEEEEECCCCccceEEEcCCCcceeeeee-e--e----cCeEEEEEcc---------C-CEEEEEeCCCC-------cEe
Q 002016 64 VIASLDLRHGEIFWRHVLGINDVVDGIDI-A--L----GKYVITLSSD---------G-STLRAWNLPDG-------QMV 119 (981)
Q Consensus 64 ~L~ALd~~tG~ivWR~~l~~~~~i~~l~~-~--~----~~~vV~Vs~~---------g-~~V~A~da~tG-------~ll 119 (981)
.|.-+|+.+.+++=+..|+....+..+.. . . ....++||+. . |+++-++...+ +++
T Consensus 3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i 82 (321)
T PF03178_consen 3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI 82 (321)
T ss_dssp EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence 46667888888887777776643332211 1 1 1345555432 1 68999999885 333
Q ss_pred EEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCc-EeEEEeccCcceeeeEEEEeecCCeEEEEEecC
Q 002016 120 WESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGE-ILWTRDFAAESVEVQQVIQLDESDQIYVVGYAG 198 (981)
Q Consensus 120 We~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~-~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g 198 (981)
.+....+++. + +. .-++.+++..++.|+.++....+ .+=......+.. ...+ ...++.+++.....
T Consensus 83 ~~~~~~g~V~--a--i~------~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~-i~sl--~~~~~~I~vgD~~~ 149 (321)
T PF03178_consen 83 HSTEVKGPVT--A--IC------SFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFY-ITSL--SVFKNYILVGDAMK 149 (321)
T ss_dssp EEEEESS-EE--E--EE------EETTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSS-EEEE--EEETTEEEEEESSS
T ss_pred EEEeecCcce--E--hh------hhCCEEEEeecCEEEEEEccCcccchhhheecceEE-EEEE--eccccEEEEEEccc
Confidence 4444444332 1 11 11455666778888888877777 221111111111 1122 23456666544433
Q ss_pred CceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEee
Q 002016 199 SSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFK 254 (981)
Q Consensus 199 ~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~ 254 (981)
+ +.++.++..+-+...-.+-..+..+..-.++..++.+++.|. .|++++....
T Consensus 150 s--v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~-~gnl~~l~~~ 202 (321)
T PF03178_consen 150 S--VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDK-DGNLFVLRYN 202 (321)
T ss_dssp S--EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEET-TSEEEEEEE-
T ss_pred C--EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcC-CCeEEEEEEC
Confidence 2 445566653322322221112323332233324457788885 4777777664
No 186
>PRK04922 tolB translocation protein TolB; Provisional
Probab=35.12 E-value=8.1e+02 Score=28.83 Aligned_cols=149 Identities=13% Similarity=0.189 Sum_probs=71.1
Q ss_pred ecCeEEEEEcc--CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee-C--CEEEEEECCCCcEe
Q 002016 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-K--GCLHAVSSIDGEIL 167 (981)
Q Consensus 94 ~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~-~--g~l~aLd~~tG~~~ 167 (981)
.++.+++++.. ...++.||..+|+..--....+.. ....+-| + ++.+++ .+ + ..|+.+|..+|+..
T Consensus 214 Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~--~~~~~Sp-----D-G~~l~~~~s~~g~~~Iy~~d~~~g~~~ 285 (433)
T PRK04922 214 DGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGIN--GAPSFSP-----D-GRRLALTLSRDGNPEIYVMDLGSRQLT 285 (433)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCc--cCceECC-----C-CCEEEEEEeCCCCceEEEEECCCCCeE
Confidence 45667776532 357999999999865333322211 1111111 2 334443 33 3 37999999998753
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEE-cCcEEEEEECCCC
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALV-SSDTLVTLDTTRS 246 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~v-g~~~lv~~d~~~g 246 (981)
=-........ ....+.++..+++.+-.++ ...++.+|+.+|+...- .........+.+- .+..++.....++
T Consensus 286 ~lt~~~~~~~---~~~~spDG~~l~f~sd~~g-~~~iy~~dl~~g~~~~l---t~~g~~~~~~~~SpDG~~Ia~~~~~~~ 358 (433)
T PRK04922 286 RLTNHFGIDT---EPTWAPDGKSIYFTSDRGG-RPQIYRVAASGGSAERL---TFQGNYNARASVSPDGKKIAMVHGSGG 358 (433)
T ss_pred ECccCCCCcc---ceEECCCCCEEEEEECCCC-CceEEEEECCCCCeEEe---ecCCCCccCEEECCCCCEEEEEECCCC
Confidence 2111111111 1111334555655443322 23588889888874321 1111111112221 3345555443322
Q ss_pred --eEEEEEeecCe
Q 002016 247 --ILVTVSFKNRK 257 (981)
Q Consensus 247 --~L~v~~L~sg~ 257 (981)
.+++.++.+|.
T Consensus 359 ~~~I~v~d~~~g~ 371 (433)
T PRK04922 359 QYRIAVMDLSTGS 371 (433)
T ss_pred ceeEEEEECCCCC
Confidence 46777776665
No 187
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=34.55 E-value=4.8e+02 Score=31.46 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=69.1
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
+.+..|..-.+|.|+..|..+-.++=..+ +..+....+-+..++.-+--||-++.||.||..+|+.+=+..+.+...
T Consensus 520 DakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIf-- 596 (705)
T KOG0639|consen 520 DAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIF-- 596 (705)
T ss_pred ccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhhe--
Confidence 44556666788999999987755443322 222222233222334444446667899999999999999998887665
Q ss_pred CceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEec
Q 002016 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDF 172 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~ 172 (981)
++...| .++.|.|. .++.+-.+. .+|..+.+...
T Consensus 597 SLg~cP------~~dWlavGMens~vevlh-~skp~kyqlhl 631 (705)
T KOG0639|consen 597 SLGYCP------TGDWLAVGMENSNVEVLH-TSKPEKYQLHL 631 (705)
T ss_pred ecccCC------CccceeeecccCcEEEEe-cCCccceeecc
Confidence 333343 25677775 577776666 45555555544
No 188
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=34.24 E-value=6.9e+02 Score=30.19 Aligned_cols=155 Identities=14% Similarity=0.213 Sum_probs=78.0
Q ss_pred CCEEEEEcCCC-------EEEEEECCCCccceEEEcCCCc-ce--eeee-eeecCeEEEEEccC------CEEEEEeCCC
Q 002016 53 RKRVVVSTEEN-------VIASLDLRHGEIFWRHVLGIND-VV--DGID-IALGKYVITLSSDG------STLRAWNLPD 115 (981)
Q Consensus 53 ~~~VyvaT~~g-------~L~ALd~~tG~ivWR~~l~~~~-~i--~~l~-~~~~~~vV~Vs~~g------~~V~A~da~t 115 (981)
++.+|+-.... .|..+|..|++ |+.....++ .. .+-. ...++.+++.||.+ +.++.+|..+
T Consensus 122 ~~~l~lfGG~~~~~~~~~~l~~~d~~t~~--W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~ 199 (482)
T KOG0379|consen 122 GDKLYLFGGTDKKYRNLNELHSLDLSTRT--WSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLET 199 (482)
T ss_pred CCeEEEEccccCCCCChhheEeccCCCCc--EEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeecccc
Confidence 45566554433 89999999985 887665443 11 1111 23565566656532 3589999987
Q ss_pred CcEeEEEeccCccccCCceeeccccc-ccCCcEEEEEe-C------CEEEEEECCCCcEeEEEeccCcceeeeEE--EEe
Q 002016 116 GQMVWESFLRGSKHSKPLLLVPTNLK-VDKDSLILVSS-K------GCLHAVSSIDGEILWTRDFAAESVEVQQV--IQL 185 (981)
Q Consensus 116 G~llWe~~~~~~~~s~~~~~v~~~~~-~~~~~~V~V~~-~------g~l~aLd~~tG~~~W~~~~~~~~~~~~~v--v~s 185 (981)
=+ |+.-...+.. +.+-. .+.. ..++...++.+ + +-++.||..+ -.|......+.....+. ..+
T Consensus 200 ~~--W~~~~~~g~~--P~pR~-gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~ 272 (482)
T KOG0379|consen 200 ST--WSELDTQGEA--PSPRY-GHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLT 272 (482)
T ss_pred cc--ceecccCCCC--CCCCC-CceEEEECCeEEEEeccccCCceecceEeeeccc--ceeeeccccCCCCCCcceeeeE
Confidence 77 9866544332 11101 1111 12333333332 2 3589999998 45552222222211111 112
Q ss_pred ecCCeEEEEEecCC----ceeEEEEEECCCCceeeee
Q 002016 186 DESDQIYVVGYAGS----SQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 186 ~~~~~Vyvvg~~g~----~~~~v~aLd~~tG~~lw~~ 218 (981)
..+..++++|.... .-..++.||.. +..|..
T Consensus 273 ~~~~~~~l~gG~~~~~~~~l~~~~~l~~~--~~~w~~ 307 (482)
T KOG0379|consen 273 VSGDHLLLFGGGTDPKQEPLGDLYGLDLE--TLVWSK 307 (482)
T ss_pred EECCEEEEEcCCccccccccccccccccc--ccceee
Confidence 45666666554321 11345666666 445555
No 189
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=34.23 E-value=88 Score=35.61 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=45.0
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
+++.++.|+.+..|..-|..||+-+=...-... .|..+ ...+..|+-|+.+.++|.||++.|+.+--.+...
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkR-GIACl--QYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-GIACL--QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccc-cceeh--hccCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 466688888898998888888875433211111 12222 2334444434567899999999999885444443
No 190
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=34.02 E-value=5.8e+02 Score=32.27 Aligned_cols=110 Identities=13% Similarity=0.175 Sum_probs=68.3
Q ss_pred CeEEEEEc-cCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEe--EEEe
Q 002016 96 KYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEIL--WTRD 171 (981)
Q Consensus 96 ~~vV~Vs~-~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~--W~~~ 171 (981)
++-++++| -++++|-|+..+=++.-.+.+..-+ .++++.| + +...+|. .+|..+.++..+=+.. |...
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lI--TAvcy~P-----d-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~ 492 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLI--TAVCYSP-----D-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIR 492 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhhhh--eeEEecc-----C-CceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence 44555655 4789999999999988888877433 4556664 2 4445665 6999999997766643 5554
Q ss_pred cc------CcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeee
Q 002016 172 FA------AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHE 218 (981)
Q Consensus 172 ~~------~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~ 218 (981)
.. ...++-.|..+ ...+.|.|.+.+. ++..+|..+-+++-.+
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p-~~~~~vLVTSnDS----rIRI~d~~~~~lv~Kf 540 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFP-GDPDEVLVTSNDS----RIRIYDGRDKDLVHKF 540 (712)
T ss_pred eccCccccCceeeeeEecC-CCCCeEEEecCCC----ceEEEeccchhhhhhh
Confidence 43 12234445542 2445666655443 4666676665665444
No 191
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=33.28 E-value=4.2e+02 Score=24.95 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=16.0
Q ss_pred EeCCEEEEEECCCCcEeEEEecc
Q 002016 151 SSKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 151 ~~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
..+|.|.-++. +|.++|+....
T Consensus 61 ~~dGnLvl~~~-~g~~vW~S~t~ 82 (114)
T smart00108 61 QSDGNLVLYDG-DGRVVWSSNTT 82 (114)
T ss_pred eCCCCEEEEeC-CCCEEEEeccc
Confidence 35888888774 48899986443
No 192
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=33.05 E-value=2.1e+02 Score=36.79 Aligned_cols=101 Identities=12% Similarity=0.159 Sum_probs=61.9
Q ss_pred CCEEEEEcCCCEEEEEECCC-C-ccceEEEcC--CCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcc
Q 002016 53 RKRVVVSTEENVIASLDLRH-G-EIFWRHVLG--INDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~t-G-~ivWR~~l~--~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~ 128 (981)
....|+|-.++.|..+||+- | +++|.+.-. ..-.+.++ +..++|-++||+..|.+|.+|. .|+. ....-+.
T Consensus 542 ~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~-aTt~~G~iavgs~~G~IRLyd~-~g~~---AKT~lp~ 616 (794)
T PF08553_consen 542 NEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCF-ATTEDGYIAVGSNKGDIRLYDR-LGKR---AKTALPG 616 (794)
T ss_pred CCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEE-EecCCceEEEEeCCCcEEeecc-cchh---hhhcCCC
Confidence 44689999999999999996 3 467754321 11123344 4567888888888889999995 5642 2222222
Q ss_pred ccCCceeecccccccCCcEEEEEeCCEEEEEEC
Q 002016 129 HSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSS 161 (981)
Q Consensus 129 ~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~ 161 (981)
+.. |+++... ...+.+|++.+...|.-++.
T Consensus 617 lG~--pI~~iDv-t~DGkwilaTc~tyLlLi~t 646 (794)
T PF08553_consen 617 LGD--PIIGIDV-TADGKWILATCKTYLLLIDT 646 (794)
T ss_pred CCC--CeeEEEe-cCCCcEEEEeecceEEEEEE
Confidence 312 2222111 12355667677887777774
No 193
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.94 E-value=1.2e+03 Score=30.30 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=62.0
Q ss_pred EEEEcCCCEEEEEECCCCccceEEEcCCCc--ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCc
Q 002016 56 VVVSTEENVIASLDLRHGEIFWRHVLGIND--VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPL 133 (981)
Q Consensus 56 VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~--~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~ 133 (981)
++|...+....-+=.-+-...|....=.+. ++.++--....+++.=.+.++.+|.||...-+-+=.++...
T Consensus 220 liVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren------- 292 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN------- 292 (1202)
T ss_pred eEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC-------
Confidence 444443333332222333445665543331 23333111233455434567899999997544444333222
Q ss_pred eeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCC
Q 002016 134 LLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMN 211 (981)
Q Consensus 134 ~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~t 211 (981)
|..=++. ....|+|---.+|-.+.......+.. + ..++.+|++- +. .+..+|..|
T Consensus 293 -----------dRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~----~---v~~n~LfYvk--d~---~i~~~d~~t 349 (1202)
T KOG0292|consen 293 -----------DRFWILAAHPELNLFAAGHDSGMIVFKLERERPAY----A---VNGNGLFYVK--DR---FIRSYDLRT 349 (1202)
T ss_pred -----------CeEEEEEecCCcceeeeecCCceEEEEEcccCceE----E---EcCCEEEEEc--cc---eEEeeeccc
Confidence 2211111 24566666667777777776654432 2 3556666543 21 366666665
No 194
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=32.15 E-value=1.2e+02 Score=33.18 Aligned_cols=78 Identities=14% Similarity=0.281 Sum_probs=49.5
Q ss_pred CCEEEEEE--CCCCcE-----eEEEecc--CcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeecc
Q 002016 153 KGCLHAVS--SIDGEI-----LWTRDFA--AESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFS 223 (981)
Q Consensus 153 ~g~l~aLd--~~tG~~-----~W~~~~~--~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p 223 (981)
+-++-|+| ..+|.. +...+.. .+...|..+. ....+.+|+..+.|+ +|.-+|+.||+++-+..+..+
T Consensus 179 n~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~-ID~eG~L~Va~~ng~---~V~~~dp~tGK~L~eiklPt~ 254 (310)
T KOG4499|consen 179 NYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMT-IDTEGNLYVATFNGG---TVQKVDPTTGKILLEIKLPTP 254 (310)
T ss_pred ceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcce-EccCCcEEEEEecCc---EEEEECCCCCcEEEEEEcCCC
Confidence 56675555 667753 2222221 1222233332 246889999999986 799999999999999876654
Q ss_pred CCccCceEEEcCc
Q 002016 224 GGFVGDVALVSSD 236 (981)
Q Consensus 224 ~~~~~~~~~vg~~ 236 (981)
. ..+|-++|.|
T Consensus 255 q--itsccFgGkn 265 (310)
T KOG4499|consen 255 Q--ITSCCFGGKN 265 (310)
T ss_pred c--eEEEEecCCC
Confidence 3 2356676764
No 195
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=32.12 E-value=4e+02 Score=29.30 Aligned_cols=70 Identities=10% Similarity=0.220 Sum_probs=44.3
Q ss_pred EEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeec
Q 002016 181 QVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKN 255 (981)
Q Consensus 181 ~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~s 255 (981)
.+......+.+|++.-..+ .++.||. +|+++....+....+.. .+.++|++.++..+-.++.|....+..
T Consensus 26 GLTy~pd~~tLfaV~d~~~---~i~els~-~G~vlr~i~l~g~~D~E-gI~y~g~~~~vl~~Er~~~L~~~~~~~ 95 (248)
T PF06977_consen 26 GLTYNPDTGTLFAVQDEPG---EIYELSL-DGKVLRRIPLDGFGDYE-GITYLGNGRYVLSEERDQRLYIFTIDD 95 (248)
T ss_dssp EEEEETTTTEEEEEETTTT---EEEEEET-T--EEEEEE-SS-SSEE-EEEE-STTEEEEEETTTTEEEEEEE--
T ss_pred ccEEcCCCCeEEEEECCCC---EEEEEcC-CCCEEEEEeCCCCCCce-eEEEECCCEEEEEEcCCCcEEEEEEec
Confidence 3433345678887765543 5899996 69999887654433443 366678898888886678888888843
No 196
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=31.62 E-value=5.2e+02 Score=27.36 Aligned_cols=66 Identities=21% Similarity=0.340 Sum_probs=40.5
Q ss_pred CceEEEEECCCCcEEEEEecCCCCCCCCccccceeecccCccccCCCCCeEEEEEe-cCCCCCCCcEEEEEEccCCcee
Q 002016 496 ARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGR-CGVSSKAPAILSFVDTYTGKEL 573 (981)
Q Consensus 496 ~Gkl~alds~~G~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~~~~~~~~~~~~~tG~~~ 573 (981)
-|+||-.|..+|+. |++.+.+.... ++ +..+-|- ++...++|++. .|. -+..|.+|.+|..||+..
T Consensus 87 iGkIYIkn~~~~~~-~~L~i~~~~~k--~s-PK~i~Wi-------DD~~L~vIIG~a~GT-vS~GGnLy~~nl~tg~~~ 153 (200)
T PF15525_consen 87 IGKIYIKNLNNNNW-WSLQIDQNEEK--YS-PKYIEWI-------DDNNLAVIIGYAHGT-VSKGGNLYKYNLNTGNLT 153 (200)
T ss_pred ceeEEEEecCCCce-EEEEecCcccc--cC-CceeEEe-------cCCcEEEEEccccce-EccCCeEEEEEccCCcee
Confidence 47888888887776 88877643211 21 2244453 23444556653 110 155688999999999865
No 197
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=31.62 E-value=1e+03 Score=28.92 Aligned_cols=221 Identities=13% Similarity=0.104 Sum_probs=107.6
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
.++.|++++..|.+.--++.+- ..=++...-++.+.++- ...++.+.-|+.++++.+|| .+=+.+=+..++.+.. .
T Consensus 256 engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~-~lr~GtllSGgKDRki~~Wd-~~y~k~r~~elPe~~G-~ 331 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLC-MLRDGTLLSGGKDRKIILWD-DNYRKLRETELPEQFG-P 331 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEE-EecCccEeecCccceEEecc-ccccccccccCchhcC-C
Confidence 3566899999999999987444 34444443333444452 34455444377789999999 4555555666654332 1
Q ss_pred CceeecccccccCCcEEEEE-eCCEEEE---------EECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCce
Q 002016 132 PLLLVPTNLKVDKDSLILVS-SKGCLHA---------VSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQ 201 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~-~~g~l~a---------Ld~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~ 201 (981)
...+.+ .+++ ++|. +...+.. .-..-|+.+|...... ....|+.+.+..
T Consensus 332 iRtv~e-----~~~d-i~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hp-------------s~~q~~T~gqdk-- 390 (626)
T KOG2106|consen 332 IRTVAE-----GKGD-ILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHP-------------SKNQLLTCGQDK-- 390 (626)
T ss_pred eeEEec-----CCCc-EEEeeccceEEEeeecCCceEEEEecccceeeEEcCC-------------ChhheeeccCcc--
Confidence 111111 1233 5554 3222222 2223345566653321 122233232321
Q ss_pred eEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeecCeeeEEEEeecccCCCCCCceEEeec
Q 002016 202 FHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETHLSNLGEDSSGMVEILPS 281 (981)
Q Consensus 202 ~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~~~~~~~l~~l~~~~~~~~~~~~~ 281 (981)
.+.--+ .-++.|...+.-|..-.+ +-+.+ .++.. ...|...+++.++.. +-++.-+ .........
T Consensus 391 -~v~lW~--~~k~~wt~~~~d~~~~~~--fhpsg-~va~G-t~~G~w~V~d~e~~~--lv~~~~d------~~~ls~v~y 455 (626)
T KOG2106|consen 391 -HVRLWN--DHKLEWTKIIEDPAECAD--FHPSG-VVAVG-TATGRWFVLDTETQD--LVTIHTD------NEQLSVVRY 455 (626)
T ss_pred -eEEEcc--CCceeEEEEecCceeEee--ccCcc-eEEEe-eccceEEEEecccce--eEEEEec------CCceEEEEE
Confidence 233334 677889997766642221 11122 33333 345777888877754 2222211 122222222
Q ss_pred CCcc-ceEEEecC-cEEEEEEecCC-cEEEEEee
Q 002016 282 SLTG-MFTVKINN-YKLFIRLTSED-KLEVVHKV 312 (981)
Q Consensus 282 ~~~~-~~~~~~~~-~~~l~~~~~~~-~~~v~~~~ 312 (981)
.+.| .+.+.+.+ +..+.+++.+| +...+..-
T Consensus 456 sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~ 489 (626)
T KOG2106|consen 456 SPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC 489 (626)
T ss_pred cCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee
Confidence 2334 33444433 55667777565 44444433
No 198
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=31.25 E-value=5.2e+02 Score=25.84 Aligned_cols=73 Identities=12% Similarity=0.261 Sum_probs=52.1
Q ss_pred ecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeEEEe
Q 002016 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILWTRD 171 (981)
Q Consensus 94 ~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~~ 171 (981)
.+.+++++++. ..+.|+|...-.-+....+..++- ..+++.-+. .....++|..+-.++.+|..-.+..|+..
T Consensus 62 ~~~D~LliGt~-t~llaYDV~~N~d~Fyke~~DGvn---~i~~g~~~~-~~~~l~ivGGncsi~Gfd~~G~e~fWtVt 134 (136)
T PF14781_consen 62 DGRDCLLIGTQ-TSLLAYDVENNSDLFYKEVPDGVN---AIVIGKLGD-IPSPLVIVGGNCSIQGFDYEGNEIFWTVT 134 (136)
T ss_pred CCcCEEEEecc-ceEEEEEcccCchhhhhhCcccee---EEEEEecCC-CCCcEEEECceEEEEEeCCCCcEEEEEec
Confidence 45678888875 589999999999988888887653 223322111 12445666678899999988888899864
No 199
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=31.20 E-value=9.4e+02 Score=28.41 Aligned_cols=185 Identities=11% Similarity=0.095 Sum_probs=91.0
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCC-cceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-DVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
+..++.+|.++.+.--|..+++.+=. |... +.+..+....+...|+=++.+.++--||...+.-.=+.- ..+.+ .
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r~~~T--LsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~c-n 306 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLRLRHT--LSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQC-N 306 (459)
T ss_pred CceEEeecCCCceeeeeccchhhhhh--hcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-ccccc-c
Confidence 44577788888777777666554322 3221 112111111222223324456788888876533221111 11111 1
Q ss_pred CceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEEC
Q 002016 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINA 209 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~ 209 (981)
+. + .. ...++. .|+.|...|..++...-+.+...... .+..+.++..+...+-+. .+-.+|.
T Consensus 307 DI--~------~~-~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt---Sl~ls~~g~~lLsssRDd----tl~viDl 370 (459)
T KOG0288|consen 307 DI--V------CS-ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT---SLDLSMDGLELLSSSRDD----TLKVIDL 370 (459)
T ss_pred ce--E------ec-ceeeeecccccceEEEeccCCceeeEeecCccee---eEeeccCCeEEeeecCCC----ceeeeec
Confidence 11 0 01 111221 38899999999998888876654211 121112333333322222 3566677
Q ss_pred CCCceeeeeeeec---cCCccCceEEEcCcEEEEEECCCCeEEEEEeecCee
Q 002016 210 MNGELLNHETAAF---SGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 210 ~tG~~lw~~~v~~---p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
.+-++.-.++... .++.+ .++|-.++-+++.-+.+|++++=++.+|++
T Consensus 371 Rt~eI~~~~sA~g~k~asDwt-rvvfSpd~~YvaAGS~dgsv~iW~v~tgKl 421 (459)
T KOG0288|consen 371 RTKEIRQTFSAEGFKCASDWT-RVVFSPDGSYVAAGSADGSVYIWSVFTGKL 421 (459)
T ss_pred ccccEEEEeeccccccccccc-eeEECCCCceeeeccCCCcEEEEEccCceE
Confidence 7766665553211 12222 233333344444445679999999999885
No 200
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=31.12 E-value=1.9e+02 Score=36.25 Aligned_cols=72 Identities=13% Similarity=0.239 Sum_probs=47.6
Q ss_pred CEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccC
Q 002016 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRG 126 (981)
Q Consensus 54 ~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~ 126 (981)
..+.+++.+-.+.--|..+|..+=.+. +...++..+.....+..+.-++.++.|.-||..+|+++=+.....
T Consensus 548 ~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht 619 (707)
T KOG0263|consen 548 NYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHT 619 (707)
T ss_pred cccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhccc
Confidence 346667778899999999998865542 222344444322333333335567899999999999987766653
No 201
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=31.03 E-value=1e+02 Score=35.69 Aligned_cols=72 Identities=19% Similarity=0.343 Sum_probs=39.3
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeee-cCeEEEEEccCCEEEEEeCCCCcEeEEEecc
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIAL-GKYVITLSSDGSTLRAWNLPDGQMVWESFLR 125 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~-~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~ 125 (981)
++..|++++.+..|.+.....=-.+=..-|+..+-+..+ .. .++.+.=++++++||.||-.+|+.+=...+.
T Consensus 162 D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i--sl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 162 DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI--SLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred CCCEEEEecCCceEEEEecCcccchhhhccccHhheeee--eeccCceeeecCCCCcEEEEecccCCcccccchh
Confidence 456677888777776665432211111222211112222 33 3344332445689999999999999555544
No 202
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=30.97 E-value=8.4e+02 Score=27.76 Aligned_cols=106 Identities=10% Similarity=0.194 Sum_probs=62.0
Q ss_pred EEEEEccCCEEEEEeCCCC--cEeEEEeccCccc----cCCceeecccccccCCcEEEEEeCC----EEEEEECCCCcEe
Q 002016 98 VITLSSDGSTLRAWNLPDG--QMVWESFLRGSKH----SKPLLLVPTNLKVDKDSLILVSSKG----CLHAVSSIDGEIL 167 (981)
Q Consensus 98 vV~Vs~~g~~V~A~da~tG--~llWe~~~~~~~~----s~~~~~v~~~~~~~~~~~V~V~~~g----~l~aLd~~tG~~~ 167 (981)
.+-....=+.|+.+|.++| +++|.-....+.. ..++..-| ..|..++.+.|| .|+.+|.++|+..
T Consensus 70 ~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP-----~~D~LLlAR~DGh~nLGvy~ldr~~g~~~ 144 (339)
T PF09910_consen 70 TIDFRNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDP-----YEDRLLLARADGHANLGVYSLDRRTGKAE 144 (339)
T ss_pred EEEEeeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCC-----CcCEEEEEecCCcceeeeEEEcccCCcee
Confidence 3433443368999999999 6789888765421 01222211 224444555655 6899999999999
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEec--CCceeEEEEEECCCCceee
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYA--GSSQFHAYQINAMNGELLN 216 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~--g~~~~~v~aLd~~tG~~lw 216 (981)
|-.+.+..-- .. ..+...|-+ .. ++ .-.+.|+|+.+|+.+-
T Consensus 145 ~L~~~ps~KG----~~--~~D~a~F~i-~~~~~g-~~~i~~~Dli~~~~~~ 187 (339)
T PF09910_consen 145 KLSSNPSLKG----TL--VHDYACFGI-NNFHKG-VSGIHCLDLISGKWVI 187 (339)
T ss_pred eccCCCCcCc----eE--eeeeEEEec-cccccC-CceEEEEEccCCeEEE
Confidence 9876654321 10 122222222 11 11 1249999999999854
No 203
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=30.87 E-value=4.5e+02 Score=31.38 Aligned_cols=67 Identities=16% Similarity=0.305 Sum_probs=44.0
Q ss_pred EccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCc
Q 002016 102 SSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAE 175 (981)
Q Consensus 102 s~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~ 175 (981)
.+.++.|++||+.+|.++-...-..+.+ .++.+.| .+.++.-. .||.|.-.+.++|+..=++.....
T Consensus 428 as~dstV~lwdv~~gv~i~~f~kH~~pV-ysvafS~------~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~ 495 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESGVPIHTLMKHQEPV-YSVAFSP------NGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG 495 (524)
T ss_pred eecCCeEEEEEccCCceeEeeccCCCce-EEEEecC------CCcEEEecCCCCeeEeccccchheeEeecCCCe
Confidence 4456799999999999999874443332 2222221 13333333 389999999999988877766544
No 204
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=30.78 E-value=2.1e+02 Score=31.25 Aligned_cols=83 Identities=19% Similarity=0.356 Sum_probs=50.2
Q ss_pred cCeEEEEEccCCEEEEEe--CCCCcEeEEEeccCccccCC-ceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEE
Q 002016 95 GKYVITLSSDGSTLRAWN--LPDGQMVWESFLRGSKHSKP-LLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWT 169 (981)
Q Consensus 95 ~~~vV~Vs~~g~~V~A~d--a~tG~llWe~~~~~~~~s~~-~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~ 169 (981)
.+..+++-+.+-.|-||| ..+|.+.=+..+-.-.-+++ -...|.....+.++.++|. .+|+++.+|+.||+.+=+
T Consensus 169 ~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~e 248 (310)
T KOG4499|consen 169 AKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLE 248 (310)
T ss_pred CcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEE
Confidence 344555545566898888 88887765433211000000 0112222223445666764 689999999999999999
Q ss_pred EeccCcce
Q 002016 170 RDFAAESV 177 (981)
Q Consensus 170 ~~~~~~~~ 177 (981)
...+.+..
T Consensus 249 iklPt~qi 256 (310)
T KOG4499|consen 249 IKLPTPQI 256 (310)
T ss_pred EEcCCCce
Confidence 99986654
No 205
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=30.76 E-value=1.2e+02 Score=34.06 Aligned_cols=63 Identities=17% Similarity=0.344 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeee-ecCeEEEEEccCCEEEEEeCCC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIA-LGKYVITLSSDGSTLRAWNLPD 115 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~-~~~~vV~Vs~~g~~V~A~da~t 115 (981)
++..||-++.+-.|+..|.++|+..-|+.....- +..+.+. .|-.+|.-++++++++.||.-+
T Consensus 101 d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~-vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~ 164 (338)
T KOG0265|consen 101 DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF-VNSLDPSRRGPQLVCSGSDDGTLKLWDIRK 164 (338)
T ss_pred CCCEEEEecCCceEEEEecccceeeehhccccce-eeecCccccCCeEEEecCCCceEEEEeecc
Confidence 4666999999999999999999999998876651 2233222 2333444345678999999853
No 206
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=30.47 E-value=4.3e+02 Score=25.01 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=16.0
Q ss_pred EeCCEEEEEECCCCcEeEEEecc
Q 002016 151 SSKGCLHAVSSIDGEILWTRDFA 173 (981)
Q Consensus 151 ~~~g~l~aLd~~tG~~~W~~~~~ 173 (981)
..+|.|..+|. +|.++|+....
T Consensus 62 ~~dGnLvl~~~-~g~~vW~S~~~ 83 (116)
T cd00028 62 QSDGNLVIYDG-SGTVVWSSNTT 83 (116)
T ss_pred ecCCCeEEEcC-CCcEEEEeccc
Confidence 35888877775 67899986543
No 207
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=30.35 E-value=9.5e+02 Score=28.18 Aligned_cols=67 Identities=18% Similarity=0.218 Sum_probs=36.4
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEe
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMV 119 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~ll 119 (981)
++.++..++.+..+.--|+.|-.+.-.-.=... =+..+.-+-++..+.-|.-+|.++-||+++|+++
T Consensus 126 ~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~ 192 (480)
T KOG0271|consen 126 TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQI 192 (480)
T ss_pred CCceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEECCCcchhhccccCCeEEEecCCCCCcc
Confidence 466788888888877767665333222110000 0111211122333332445789999999999876
No 208
>TIGR00548 lolB outer membrane lipoprotein LolB. This protein, LolB, is known so far only in the gamma and beta subdivisions of the Proteobacteria. It is a processed, lipid-modified outer membrane protein. It is required in E. coli for insertion of the major outer lipoprotein (Lpp) into the outer membrane. Lpp is transferred to LolB from the carrier protein LolA in the periplasm. Previously, this protein was thought to play in role in 5-aminolevulinic acid synthesis and was designated HemM.
Probab=30.19 E-value=75 Score=33.69 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcE
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQM 118 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~l 118 (981)
.+++-+-+.+. .-+|...|++.-+....+... .+.|..++-+.++++.+...+ .+|+.
T Consensus 51 ~Gria~~~~~~------~~sa~~~W~q~~~~~~~l~L~-~PlG~~~~~l~~~~~~v~l~~-~~g~~ 108 (202)
T TIGR00548 51 DGKVGYISPRD------SGSGRFFWQQRNQGYYDLRLS-GPLGRGALRLTGREGAVSLED-NGGGR 108 (202)
T ss_pred eeeEEEECCCc------eeEEEEEEEECCCCceEEEEE-ccCCCcEEEEEEcCCEEEEEE-CCCCE
Confidence 45555555543 235556799984433233322 235666666665555666666 45555
No 209
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=30.03 E-value=5.8e+02 Score=29.36 Aligned_cols=64 Identities=13% Similarity=0.083 Sum_probs=43.7
Q ss_pred EEEE-EeCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCce
Q 002016 147 LILV-SSKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGEL 214 (981)
Q Consensus 147 ~V~V-~~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~ 214 (981)
.|.| +++|.+..+|..+|+.+=+++...+.....+.+....+..|+..+..| .|...|+++-..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG----~Vr~wD~Rs~~e 106 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDG----TVRLWDIRSQAE 106 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCC----eEEEEEeecchh
Confidence 3555 489999999999999998888776655433333222566777766655 477777765443
No 210
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=29.69 E-value=1.8e+02 Score=34.74 Aligned_cols=74 Identities=12% Similarity=0.176 Sum_probs=57.8
Q ss_pred cCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCc
Q 002016 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGS 127 (981)
Q Consensus 51 ~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~ 127 (981)
.++-+++++.-+|.|.+-|.++|..+=++++... |-.+.---.++++.||-..++|..+.. +|....+..+...
T Consensus 561 ~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQ--IfSLg~cP~~dWlavGMens~vevlh~-skp~kyqlhlheS 634 (705)
T KOG0639|consen 561 KDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQ--IFSLGYCPTGDWLAVGMENSNVEVLHT-SKPEKYQLHLHES 634 (705)
T ss_pred CCCceeecCCCccceeehhhhhhhhhhhhhhhhh--heecccCCCccceeeecccCcEEEEec-CCccceeeccccc
Confidence 3466799999999999999999999888888765 333311246789999987788999985 7888888777653
No 211
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=29.10 E-value=5.6e+02 Score=29.78 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=43.3
Q ss_pred EEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCc
Q 002016 55 RVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQ 117 (981)
Q Consensus 55 ~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~ 117 (981)
.++.++.+|.|--.|+.+-+..|+..-..+ -+.|+ ....+..+++|. |.+|.-|-. +|.
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi-~v~~~~~~tvgd-DKtvK~wk~-~~~ 139 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGI-CVTQTSFFTVGD-DKTVKQWKI-DGP 139 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheeecccC-ceeeE-EecccceEEecC-Ccceeeeec-cCC
Confidence 478889999999999999999999887654 24566 233456667554 568999875 454
No 212
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=28.86 E-value=9.3e+02 Score=27.59 Aligned_cols=191 Identities=9% Similarity=0.027 Sum_probs=0.0
Q ss_pred ccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 50 KTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 50 ~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
+.++..+.++|.++.+.-.|...|.++-|..++.+.-...+++...+..|+ +--...-...+-.+++-.-=..-+...+
T Consensus 74 S~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va-~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 74 SRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVA-TIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred cCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEE-EEecCCcEEEEecCCceeeccCCCcccc
Q ss_pred cCCce---eecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEE
Q 002016 130 SKPLL---LVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAY 205 (981)
Q Consensus 130 s~~~~---~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~ 205 (981)
...+. +- ..++++++. +.|.+..+|+.|=+.+=+.+...... ..++. ..-.+..+++..+.. .+.
T Consensus 153 n~sas~~~fd------r~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~-IK~I~-~s~~g~~liiNtsDR---vIR 221 (405)
T KOG1273|consen 153 NSSASHGVFD------RRGKYIITGTSKGKLLVYDAETLECVASFRITSVQA-IKQII-VSRKGRFLIINTSDR---VIR 221 (405)
T ss_pred cccccccccc------CCCCEEEEecCcceEEEEecchheeeeeeeechhee-eeEEE-EeccCcEEEEecCCc---eEE
Q ss_pred EEECC---------CCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEE
Q 002016 206 QINAM---------NGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVS 252 (981)
Q Consensus 206 aLd~~---------tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~ 252 (981)
.++.+ -=++..+.+--...-.-.+|-+-|++.++|..+...--.-+|
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEE
No 213
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=28.85 E-value=1e+03 Score=28.05 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=59.6
Q ss_pred EEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecc---cc
Q 002016 64 VIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPT---NL 140 (981)
Q Consensus 64 ~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~---~~ 140 (981)
.|.-.| .+|+++|+...+.+ .+.++.-...+.+|+|..+ |.++-+|.. |+. ++.+..+.. ...+... ..
T Consensus 62 ~I~iys-~sG~ll~~i~w~~~-~iv~~~wt~~e~LvvV~~d-G~v~vy~~~-G~~--~fsl~~~i~--~~~v~e~~i~~~ 133 (410)
T PF04841_consen 62 SIQIYS-SSGKLLSSIPWDSG-RIVGMGWTDDEELVVVQSD-GTVRVYDLF-GEF--QFSLGEEIE--EEKVLECRIFAI 133 (410)
T ss_pred EEEEEC-CCCCEeEEEEECCC-CEEEEEECCCCeEEEEEcC-CEEEEEeCC-Cce--eechhhhcc--ccCccccccccc
Confidence 366666 48999999988773 3433322457788888876 489999975 777 666554332 1111100 00
Q ss_pred cccCCcEEEEEeCCEEEEEECCCCcEeEEE
Q 002016 141 KVDKDSLILVSSKGCLHAVSSIDGEILWTR 170 (981)
Q Consensus 141 ~~~~~~~V~V~~~g~l~aLd~~tG~~~W~~ 170 (981)
...+.|.++...+++++.++.-+...+|+.
T Consensus 134 ~~~~~GivvLt~~~~~~~v~n~~~~~~~~~ 163 (410)
T PF04841_consen 134 WFYKNGIVVLTGNNRFYVVNNIDEPVKLRR 163 (410)
T ss_pred ccCCCCEEEECCCCeEEEEeCccccchhhc
Confidence 112244333347889999987766556654
No 214
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=27.95 E-value=1.1e+03 Score=28.12 Aligned_cols=76 Identities=11% Similarity=0.029 Sum_probs=52.8
Q ss_pred cCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCeEEEE-EccCCEEEEEeCCCCcEeEEEeccCc
Q 002016 51 TGRKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITL-SSDGSTLRAWNLPDGQMVWESFLRGS 127 (981)
Q Consensus 51 ~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-~i~~l~~~~~~~vV~V-s~~g~~V~A~da~tG~llWe~~~~~~ 127 (981)
..++.+.-++.+|..+=-|.++|..+=.+.-+..+ .+... ...-++.++. +..++.|.-||...+...=++....+
T Consensus 313 ~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~-~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~ 390 (506)
T KOG0289|consen 313 PTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA-AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG 390 (506)
T ss_pred cCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe-eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC
Confidence 35777889999999998899999988777665332 12222 2234566665 44578999999999987666655443
No 215
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=27.84 E-value=1.1e+03 Score=27.94 Aligned_cols=149 Identities=15% Similarity=0.198 Sum_probs=71.0
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCC-c-------------------ceeeeeeeecCeEEEEEccCCEEEEEe
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIN-D-------------------VVDGIDIALGKYVITLSSDGSTLRAWN 112 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~-~-------------------~i~~l~~~~~~~vV~Vs~~g~~V~A~d 112 (981)
++..++.++.|.++.-+ +|..-|+...... + .+.++....++.++.++..|..++.||
T Consensus 189 ~~~~~ivg~~G~v~~S~--D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d 266 (398)
T PLN00033 189 PKSAEMVTDEGAIYVTS--NAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSRGNFYLTWE 266 (398)
T ss_pred CCceEEEeccceEEEEC--CCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECCccEEEecC
Confidence 44566777778766654 7778898752111 0 000111112334666666665556664
Q ss_pred CCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCCcEeE-----EEeccC-cceeeeEEEEee
Q 002016 113 LPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDGEILW-----TRDFAA-ESVEVQQVIQLD 186 (981)
Q Consensus 113 a~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG~~~W-----~~~~~~-~~~~~~~vv~s~ 186 (981)
+|..-|+..-..... ...-+ . ....+..+++..+|.++.- ..+| .-| ....-. ....+..+. -.
T Consensus 267 --~G~~~W~~~~~~~~~--~l~~v--~-~~~dg~l~l~g~~G~l~~S-~d~G-~~~~~~~f~~~~~~~~~~~l~~v~-~~ 336 (398)
T PLN00033 267 --PGQPYWQPHNRASAR--RIQNM--G-WRADGGLWLLTRGGGLYVS-KGTG-LTEEDFDFEEADIKSRGFGILDVG-YR 336 (398)
T ss_pred --CCCcceEEecCCCcc--ceeee--e-EcCCCCEEEEeCCceEEEe-cCCC-CcccccceeecccCCCCcceEEEE-Ec
Confidence 688889855433221 11101 0 0122333444456665543 2333 333 321111 111122222 23
Q ss_pred cCCeEEEEEecCCceeEEEEEECCCCceeeeee
Q 002016 187 ESDQIYVVGYAGSSQFHAYQINAMNGELLNHET 219 (981)
Q Consensus 187 ~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~ 219 (981)
.++.++++|..| +.... .+|-.-|+..
T Consensus 337 ~d~~~~a~G~~G-----~v~~s-~D~G~tW~~~ 363 (398)
T PLN00033 337 SKKEAWAAGGSG-----ILLRS-TDGGKSWKRD 363 (398)
T ss_pred CCCcEEEEECCC-----cEEEe-CCCCcceeEc
Confidence 677888888877 22222 3566678774
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=27.71 E-value=1.6e+02 Score=34.86 Aligned_cols=111 Identities=11% Similarity=0.126 Sum_probs=69.0
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCc-ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGIND-VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
+..+..+..+|.|+|+|-.|+++.-.+.+.+.. .+.-+ ..+..+.|.- ...++-+| ..|..+--.+-..++.
T Consensus 141 GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~L---Hneq~~AVAQ-K~y~yvYD-~~GtElHClk~~~~v~-- 213 (545)
T KOG1272|consen 141 GRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFL---HNEQFFAVAQ-KKYVYVYD-NNGTELHCLKRHIRVA-- 213 (545)
T ss_pred ccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhh---cchHHHHhhh-hceEEEec-CCCcEEeehhhcCchh--
Confidence 445899999999999999999999888876541 11111 2223333332 24566666 3566666555444432
Q ss_pred CceeecccccccCCcEEEEE--eCCEEEEEECCCCcEeEEEeccCcce
Q 002016 132 PLLLVPTNLKVDKDSLILVS--SKGCLHAVSSIDGEILWTRDFAAESV 177 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~--~~g~l~aLd~~tG~~~W~~~~~~~~~ 177 (981)
-+.+.|- -.+++. ..|-|.-.|..+|+.+=+.....+.+
T Consensus 214 rLeFLPy-------HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~ 254 (545)
T KOG1272|consen 214 RLEFLPY-------HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRT 254 (545)
T ss_pred hhcccch-------hheeeecccCCceEEEeechhhhhHHHHccCCcc
Confidence 2334431 234443 37889999999999887776655543
No 217
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=27.35 E-value=8.1e+02 Score=31.33 Aligned_cols=77 Identities=16% Similarity=0.189 Sum_probs=49.5
Q ss_pred EEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcc
Q 002016 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAES 176 (981)
Q Consensus 98 vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~ 176 (981)
++.++.-.|++..||-..|...=+..-+.... ++...++... +..+++.+. +...+.-.|..+|+..|+++.....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~~~~~~~-qdl~W~~~rd--~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i 157 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLSHSNDSV-QDLCWVPARD--DSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI 157 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhcCCCcch-hheeeeeccC--cchheeEEecCCcEEEEEEccCCceeeccccCCcc
Confidence 44434446799999999886554444333333 5666664322 111344444 5778999999999999999877554
Q ss_pred e
Q 002016 177 V 177 (981)
Q Consensus 177 ~ 177 (981)
+
T Consensus 158 L 158 (1062)
T KOG1912|consen 158 L 158 (1062)
T ss_pred e
Confidence 4
No 218
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=25.96 E-value=6.4e+02 Score=31.31 Aligned_cols=60 Identities=7% Similarity=0.014 Sum_probs=40.3
Q ss_pred ecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEE-e-CCEEEEEECC
Q 002016 94 LGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVS-S-KGCLHAVSSI 162 (981)
Q Consensus 94 ~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~-~-~g~l~aLd~~ 162 (981)
..+++++.++ ++.++.||+.+++.+-+.......+ +++... .|+.++.. + |..+.-+|+.
T Consensus 139 TaDgil~s~a-~g~v~i~D~stqk~~~el~~h~d~v-QSa~Ws-------eDG~llatscKdkqirifDPR 200 (1012)
T KOG1445|consen 139 TADGILASGA-HGSVYITDISTQKTAVELSGHTDKV-QSADWS-------EDGKLLATSCKDKQIRIFDPR 200 (1012)
T ss_pred CcCceEEecc-CceEEEEEcccCceeecccCCchhh-hccccc-------cCCceEeeecCCcceEEeCCc
Confidence 4667777554 5699999999999999988776655 333222 34545553 3 6667777764
No 219
>PRK01742 tolB translocation protein TolB; Provisional
Probab=25.79 E-value=1.1e+03 Score=27.58 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=66.9
Q ss_pred ecCeEEEEEcc--CCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEE-Ee-CC--EEEEEECCCCcEe
Q 002016 94 LGKYVITLSSD--GSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILV-SS-KG--CLHAVSSIDGEIL 167 (981)
Q Consensus 94 ~~~~vV~Vs~~--g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V-~~-~g--~l~aLd~~tG~~~ 167 (981)
.++.+++++.+ +.+++.||..+|+..--....+... ...+-| + +..+++ .. +| .++.+|..+|+..
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~--~~~wSP-----D-G~~La~~~~~~g~~~Iy~~d~~~~~~~ 285 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG--APAFSP-----D-GSRLAFASSKDGVLNIYVMGANGGTPS 285 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC--ceeECC-----C-CCEEEEEEecCCcEEEEEEECCCCCeE
Confidence 56667776543 3579999999997543233222111 111211 2 333443 32 44 4777887777642
Q ss_pred EEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCe
Q 002016 168 WTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSI 247 (981)
Q Consensus 168 W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~ 247 (981)
= ....... ......+.++..+++.+..++ ...++.+|..+|..... . ..+. ...+...+..++.... ..
T Consensus 286 ~-lt~~~~~--~~~~~wSpDG~~i~f~s~~~g-~~~I~~~~~~~~~~~~l---~-~~~~-~~~~SpDG~~ia~~~~--~~ 354 (429)
T PRK01742 286 Q-LTSGAGN--NTEPSWSPDGQSILFTSDRSG-SPQVYRMSASGGGASLV---G-GRGY-SAQISADGKTLVMING--DN 354 (429)
T ss_pred e-eccCCCC--cCCEEECCCCCEEEEEECCCC-CceEEEEECCCCCeEEe---c-CCCC-CccCCCCCCEEEEEcC--CC
Confidence 1 1111111 111112334555555443222 34678888877654321 1 1111 1011112334444432 34
Q ss_pred EEEEEeecCe
Q 002016 248 LVTVSFKNRK 257 (981)
Q Consensus 248 L~v~~L~sg~ 257 (981)
+...|+.+|.
T Consensus 355 i~~~Dl~~g~ 364 (429)
T PRK01742 355 VVKQDLTSGS 364 (429)
T ss_pred EEEEECCCCC
Confidence 6667887775
No 220
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.49 E-value=1e+03 Score=27.05 Aligned_cols=102 Identities=12% Similarity=0.204 Sum_probs=63.7
Q ss_pred eCCEEEEEECCCCcE--eEEEeccCcce---eeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCc
Q 002016 152 SKGCLHAVSSIDGEI--LWTRDFAAESV---EVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGF 226 (981)
Q Consensus 152 ~~g~l~aLd~~tG~~--~W~~~~~~~~~---~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~ 226 (981)
.-..|+.+|.++|++ +|+.+...+.- +...++.-...+.+++.=.+|..++-|+.+|.++|+..+-....++.+.
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~~~L~~~ps~KG~ 155 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKAEKLSSNPSLKGT 155 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCceeeccCCCCcCce
Confidence 357899999999985 79877654321 3334444456788887766777778899999999998876643333221
Q ss_pred c--C-ceEEEcCcEEEEEECCCCeEEEEEeecCee
Q 002016 227 V--G-DVALVSSDTLVTLDTTRSILVTVSFKNRKI 258 (981)
Q Consensus 227 ~--~-~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~ 258 (981)
. . .|+-+ .+. ......+++.||.+|+.
T Consensus 156 ~~~D~a~F~i-~~~----~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 156 LVHDYACFGI-NNF----HKGVSGIHCLDLISGKW 185 (339)
T ss_pred EeeeeEEEec-ccc----ccCCceEEEEEccCCeE
Confidence 1 1 12211 110 01123577888888773
No 221
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=24.15 E-value=2.1e+02 Score=35.05 Aligned_cols=61 Identities=21% Similarity=0.367 Sum_probs=38.0
Q ss_pred EEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEeCCEEEEEECCCC
Q 002016 98 VITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSSKGCLHAVSSIDG 164 (981)
Q Consensus 98 vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~~g~l~aLd~~tG 164 (981)
++.-|+++|.||.|...||+-+|.+.+.+.+- ....-|. ..-.++.|..++.+.-++..=|
T Consensus 414 wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~--~vaw~P~----~~~~vLAvA~~~~~~ivnp~~G 474 (733)
T KOG0650|consen 414 WLASGSDDGTVRIWEIATGRCVRTVQFDSEIR--SVAWNPL----SDLCVLAVAVGECVLIVNPIFG 474 (733)
T ss_pred eeeecCCCCcEEEEEeecceEEEEEeecceeE--EEEecCC----CCceeEEEEecCceEEeCcccc
Confidence 44436677899999999999999999987653 2222211 1122233334555666666666
No 222
>COG3419 PilY1 Tfp pilus assembly protein, tip-associated adhesin PilY1 [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.96 E-value=1.2e+03 Score=30.96 Aligned_cols=74 Identities=20% Similarity=0.292 Sum_probs=47.4
Q ss_pred CEEEEEcCCCEEEEEECCCCccceEEEcCC----------Ccc------eeeeee-e---ec--CeEEEEE---ccCCEE
Q 002016 54 KRVVVSTEENVIASLDLRHGEIFWRHVLGI----------NDV------VDGIDI-A---LG--KYVITLS---SDGSTL 108 (981)
Q Consensus 54 ~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~----------~~~------i~~l~~-~---~~--~~vV~Vs---~~g~~V 108 (981)
..||++--+|.|.|+|+.+|.++.-..-+. +.. +++-+. . .+ -..|.++ ..|+.+
T Consensus 583 ~~VyvgandGmLhaFd~~tG~E~fA~~P~avl~~l~~~t~~~y~~h~yyVDg~p~~~da~~ng~wrsvL~g~~G~GG~gl 662 (1036)
T COG3419 583 PVVYVGANDGMLHAFDANTGSERFAYVPSAVLSTLHSLTAPGYTAHQYYVDGSPTAADAYDNGQWRSVLVGGLGAGGRGL 662 (1036)
T ss_pred ceEEEecCCceeeeccCCccceeeecCcHHHHhhhhhhcCCCcccccceecCCceeehhhcCCcceEEEEeecCCCCcee
Confidence 349999999999999999999988775211 110 111110 0 11 1344443 245779
Q ss_pred EEEeCCCCc-----EeEEEeccCc
Q 002016 109 RAWNLPDGQ-----MVWESFLRGS 127 (981)
Q Consensus 109 ~A~da~tG~-----llWe~~~~~~ 127 (981)
+|+|..+=. ++|+......
T Consensus 663 yALDVTdP~~~~~~~Lw~~~~~d~ 686 (1036)
T COG3419 663 YALDVTDPDFSNSNLLWENNSNDD 686 (1036)
T ss_pred EEEEccCccccCCcchhcccCCCc
Confidence 999987554 8999887643
No 223
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=23.71 E-value=1.2e+03 Score=30.18 Aligned_cols=152 Identities=15% Similarity=0.160 Sum_probs=79.9
Q ss_pred CEEEEEcCCCEEEEEECC-CCccceEEEcCCCcceee--ee-----eeec-CeEEEEEc-cCCEEEEEeCCCCcEeEEEe
Q 002016 54 KRVVVSTEENVIASLDLR-HGEIFWRHVLGINDVVDG--ID-----IALG-KYVITLSS-DGSTLRAWNLPDGQMVWESF 123 (981)
Q Consensus 54 ~~VyvaT~~g~L~ALd~~-tG~ivWR~~l~~~~~i~~--l~-----~~~~-~~vV~Vs~-~g~~V~A~da~tG~llWe~~ 123 (981)
++-||.-++ .|..+.-. +|.+-....+..-....| +. ...+ ..++.... +...|+-+|.+.|+++=+|.
T Consensus 443 DrSfVvRg~-~igVFk~~~~~~l~f~t~i~~i~~~~g~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~ 521 (794)
T PF08553_consen 443 DRSFVVRGS-KIGVFKNTDDDGLEFSTAISNISTPKGKNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWK 521 (794)
T ss_pred CceEEECCC-cEeEEECCCCCceeeeEEecccccCCCcccCcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEee
Confidence 455555444 35556544 565655544322101011 00 1223 34555543 45789999999999988887
Q ss_pred ccCccccCCceeecccc-c-ccCCcEEEEEeCCEEEEEECCC-C-cEeEEEeccCcceeeeEEEEeecCCeEEEEEecCC
Q 002016 124 LRGSKHSKPLLLVPTNL-K-VDKDSLILVSSKGCLHAVSSID-G-EILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGS 199 (981)
Q Consensus 124 ~~~~~~s~~~~~v~~~~-~-~~~~~~V~V~~~g~l~aLd~~t-G-~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~ 199 (981)
+....- -..+.|..- + .......+.+++..|+++|+.- | +++|.....-..-..+++...+..|.+.|++..|.
T Consensus 522 ~~~~~~--v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~ 599 (794)
T PF08553_consen 522 VHDDIP--VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGD 599 (794)
T ss_pred cCCCcc--eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCceEEEEeCCCc
Confidence 764320 011222110 0 1223333445899999999865 3 36786543322222345654556777777665563
Q ss_pred ceeEEEEEECCCCc
Q 002016 200 SQFHAYQINAMNGE 213 (981)
Q Consensus 200 ~~~~v~aLd~~tG~ 213 (981)
++++ | ..|.
T Consensus 600 --IRLy--d-~~g~ 608 (794)
T PF08553_consen 600 --IRLY--D-RLGK 608 (794)
T ss_pred --EEee--c-ccch
Confidence 4555 5 4553
No 224
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=23.59 E-value=1.2e+03 Score=27.29 Aligned_cols=45 Identities=7% Similarity=0.048 Sum_probs=26.8
Q ss_pred ceEEEEEEccCCeEEEEEEeecCCCccccccceeeeEeEEEEccCCcceEEEEee
Q 002016 627 NIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVS 681 (981)
Q Consensus 627 ~~~~~~~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~e~Iv~~~~ 681 (981)
.+|.|+.+. +|.+.=|.+..++. +.+..+.+++|.++++ +-+++.
T Consensus 171 ~~ya~v~~k-~G~~~Qy~L~~~~~------g~v~~~lVR~f~~~sQ---~EGCVV 215 (381)
T PF02333_consen 171 ALYAFVNGK-DGRVEQYELTDDGD------GKVSATLVREFKVGSQ---PEGCVV 215 (381)
T ss_dssp -EEEEEEET-TSEEEEEEEEE-TT------SSEEEEEEEEEE-SS----EEEEEE
T ss_pred cEEEEEecC-CceEEEEEEEeCCC------CcEeeEEEEEecCCCc---ceEEEE
Confidence 456565554 58888888876543 3456677888888764 444444
No 225
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.78 E-value=1.8e+03 Score=28.91 Aligned_cols=173 Identities=12% Similarity=0.192 Sum_probs=80.0
Q ss_pred EEE-EccCCEEEEEeCCCCcEeEEEeccCccc-c-CCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccC
Q 002016 99 ITL-SSDGSTLRAWNLPDGQMVWESFLRGSKH-S-KPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAA 174 (981)
Q Consensus 99 V~V-s~~g~~V~A~da~tG~llWe~~~~~~~~-s-~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~ 174 (981)
++| |+++++|-.|.. +-.-.||...--+-. . .+..+-| +.+.++-. .|+.+...|...-..+=+++..
T Consensus 220 liVSG~DDRqVKlWrm-netKaWEvDtcrgH~nnVssvlfhp------~q~lIlSnsEDksirVwDm~kRt~v~tfrre- 291 (1202)
T KOG0292|consen 220 LIVSGADDRQVKLWRM-NETKAWEVDTCRGHYNNVSSVLFHP------HQDLILSNSEDKSIRVWDMTKRTSVQTFRRE- 291 (1202)
T ss_pred eEEecCCcceeeEEEe-ccccceeehhhhcccCCcceEEecC------ccceeEecCCCccEEEEecccccceeeeecc-
Confidence 344 556788999976 577789987642211 0 1111111 11222212 2555555554444333333333
Q ss_pred cceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEee
Q 002016 175 ESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFK 254 (981)
Q Consensus 175 ~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~ 254 (981)
.+..++++.+.. +.++|---.+|-++... ....++..+.+|.+.-+. ...++..|+.
T Consensus 292 -------------ndRFW~laahP~--lNLfAAgHDsGm~VFkl------eRErpa~~v~~n~LfYvk--d~~i~~~d~~ 348 (1202)
T KOG0292|consen 292 -------------NDRFWILAAHPE--LNLFAAGHDSGMIVFKL------ERERPAYAVNGNGLFYVK--DRFIRSYDLR 348 (1202)
T ss_pred -------------CCeEEEEEecCC--cceeeeecCCceEEEEE------cccCceEEEcCCEEEEEc--cceEEeeecc
Confidence 333333333221 12333333445444443 122245556666555553 4578888888
Q ss_pred cCeeeEEEEeecccCCCCCCceEEeecCCccceEEEecC--cEEEEEEe-cCCcEEEEEeecC
Q 002016 255 NRKIAFQETHLSNLGEDSSGMVEILPSSLTGMFTVKINN--YKLFIRLT-SEDKLEVVHKVDH 314 (981)
Q Consensus 255 sg~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~-~~~~~~v~~~~~~ 314 (981)
+.+ +..-.+|. ..+. +. ..++.+.-+| +.+|+-.+ ++|..+++..-.+
T Consensus 349 t~~-d~~v~~lr---~~g~--~~------~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~ 399 (1202)
T KOG0292|consen 349 TQK-DTAVASLR---RPGT--LW------QPPRSLSYNPAENAVLICSNLDNGEYELVQIPKD 399 (1202)
T ss_pred ccc-cceeEecc---CCCc--cc------CCcceeeeccccCeEEEEeccCCCeEEEEEecCc
Confidence 743 23323332 1111 00 1134444455 55666655 5567777654443
No 226
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=22.43 E-value=1.7e+03 Score=28.46 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=62.5
Q ss_pred EEEEcCCCEEEEEECCCCccceEEEcCCCc-------ceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCcc
Q 002016 56 VVVSTEENVIASLDLRHGEIFWRHVLGIND-------VVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSK 128 (981)
Q Consensus 56 VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~-------~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~ 128 (981)
|+.++....+++|+. +|+..=+-..-... .+.++. ...+..++.|+.|+.+.-||..+++-+-...-. -.
T Consensus 339 v~l~nNtv~~ysl~~-s~~~~p~~~~~~~i~~~GHR~dVRsl~-vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~ 415 (888)
T KOG0306|consen 339 VLLANNTVEWYSLEN-SGKTSPEADRTSNIEIGGHRSDVRSLC-VSSDSILLASGAGESIKIWNRDTLKCIRTITCG-YI 415 (888)
T ss_pred EEeecCceEEEEecc-CCCCCccccccceeeeccchhheeEEE-eecCceeeeecCCCcEEEEEccCcceeEEeccc-cE
Confidence 555666678899998 77664110000000 122331 234556666777789999999999988666543 22
Q ss_pred ccCCceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEE
Q 002016 129 HSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWT 169 (981)
Q Consensus 129 ~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~ 169 (981)
+ ...++| +|..|++. .+|.|..+|.+++..+=+
T Consensus 416 l--~~~Fvp------gd~~Iv~G~k~Gel~vfdlaS~~l~Et 449 (888)
T KOG0306|consen 416 L--ASKFVP------GDRYIVLGTKNGELQVFDLASASLVET 449 (888)
T ss_pred E--EEEecC------CCceEEEeccCCceEEEEeehhhhhhh
Confidence 2 233442 35556665 699999999988875433
No 227
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=22.22 E-value=1.2e+03 Score=26.81 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=70.7
Q ss_pred ECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccCCceeecccccccCCcEE
Q 002016 69 DLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLI 148 (981)
Q Consensus 69 d~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V 148 (981)
.++++..-|-...+....+. ..-+..|+|+-..+.++-+|..||+.+=+.....+.. ...-+... +....|
T Consensus 17 S~~~~~~~~~Lk~~~q~~~~----~~~e~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~-N~vrf~~~----ds~h~v 87 (376)
T KOG1188|consen 17 SVRVSNEDFCLKYDIQEQVK----DGFETAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATT-NGVRFISC----DSPHGV 87 (376)
T ss_pred ccccccccceeeccchhhhc----cCcceeEEEEecCCeEEEEeccchhhhheecCCCCcc-cceEEecC----CCCCee
Confidence 34556666665554221111 0112455556555799999999999998888776554 33333311 123345
Q ss_pred EEE-eCCEEEEEECCCCc----EeEEEeccCcceeeeEEEEeecCCeEEEEEe-cCCceeEEEEEECCCCc
Q 002016 149 LVS-SKGCLHAVSSIDGE----ILWTRDFAAESVEVQQVIQLDESDQIYVVGY-AGSSQFHAYQINAMNGE 213 (981)
Q Consensus 149 ~V~-~~g~l~aLd~~tG~----~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~-~g~~~~~v~aLd~~tG~ 213 (981)
+.. +||.|...|..+-. ..|+...+. +..+.+.-..+.++..|. .-++...|+-.|.+.-+
T Consensus 88 ~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~----~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q 154 (376)
T KOG1188|consen 88 ISCSSDGTVRLWDIRSQAESARISWTQQSGT----PFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ 154 (376)
T ss_pred EEeccCCeEEEEEeecchhhhheeccCCCCC----cceEeeccCcCCeEEeccccccCceEEEEEEecccc
Confidence 554 69999999887654 346554322 233332222344444332 11223346666765433
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=22.06 E-value=1.3e+03 Score=27.02 Aligned_cols=197 Identities=10% Similarity=0.005 Sum_probs=0.0
Q ss_pred ccCCCEEEEEcCCCE---EEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCE--EEEEeCCCCcEeEEEec
Q 002016 50 KTGRKRVVVSTEENV---IASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGST--LRAWNLPDGQMVWESFL 124 (981)
Q Consensus 50 ~~~~~~VyvaT~~g~---L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~--V~A~da~tG~llWe~~~ 124 (981)
+.+++.+++.+.++. |+..|..+|+..=-...+........ -+.+..+++....++. ++.+|..+|. .-+..-
T Consensus 204 SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~-SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~ 281 (427)
T PRK02889 204 SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAW-SPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ 281 (427)
T ss_pred cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEE-CCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC
Q ss_pred cCccccCCceeecccccccCCcEEEEEe----CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCc
Q 002016 125 RGSKHSKPLLLVPTNLKVDKDSLILVSS----KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSS 200 (981)
Q Consensus 125 ~~~~~s~~~~~v~~~~~~~~~~~V~V~~----~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~ 200 (981)
..... ....+. ..+..+++.+ ...++.++..+|+..=-........ ....+.++..+++.+..++
T Consensus 282 ~~~~~-~~~~wS------pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~---~~~~SpDG~~Ia~~s~~~g- 350 (427)
T PRK02889 282 SSGID-TEPFFS------PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNT---SPRISPDGKLLAYISRVGG- 350 (427)
T ss_pred CCCCC-cCeEEc------CCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcC---ceEECCCCCEEEEEEccCC-
Q ss_pred eeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCe--EEEEEeecCeeeEEEEe
Q 002016 201 QFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSI--LVTVSFKNRKIAFQETH 264 (981)
Q Consensus 201 ~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~--L~v~~L~sg~~~~~~~~ 264 (981)
...++.+|+.+|+ ...+..............+..++......|. |++.++..+. .+.++
T Consensus 351 ~~~I~v~d~~~g~---~~~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~--~~~l~ 411 (427)
T PRK02889 351 AFKLYVQDLATGQ---VTALTDTTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI--KQRLS 411 (427)
T ss_pred cEEEEEEECCCCC---eEEccCCCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc--eEEee
No 229
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=22.05 E-value=1.2e+03 Score=26.38 Aligned_cols=212 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred EEeccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeec--CeEEEEEccCCEEEEE
Q 002016 34 HQQYIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALG--KYVITLSSDGSTLRAW 111 (981)
Q Consensus 34 ~~~~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~--~~vV~Vs~~g~~V~A~ 111 (981)
+++++|..+...-...+.++..++.++.+..+---|...+...=+..-...+=+..++..-. +-+++=++.++.|+.|
T Consensus 98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvW 177 (315)
T KOG0279|consen 98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVW 177 (315)
T ss_pred EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEE
Q ss_pred eCCCCcEeEEEeccCccccCCceeecccccccCCcEEEEEe--CCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCC
Q 002016 112 NLPDGQMVWESFLRGSKHSKPLLLVPTNLKVDKDSLILVSS--KGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESD 189 (981)
Q Consensus 112 da~tG~llWe~~~~~~~~s~~~~~v~~~~~~~~~~~V~V~~--~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~ 189 (981)
|..+=+++=.+....... ....+ ..|+.+.+.+ +|.++-.|...|+-+-+.......... ...++
T Consensus 178 nl~~~~l~~~~~gh~~~v--~t~~v------SpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl-----~fspn 244 (315)
T KOG0279|consen 178 NLRNCQLRTTFIGHSGYV--NTVTV------SPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSL-----CFSPN 244 (315)
T ss_pred ccCCcchhhccccccccE--EEEEE------CCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeE-----EecCC
Q ss_pred eEEEEEecCCceeEEEEEECCCCceeeeeeeeccCCccCceEEEcCcEEEEEECCCCeEEEEEeecCeeeEEEEe
Q 002016 190 QIYVVGYAGSSQFHAYQINAMNGELLNHETAAFSGGFVGDVALVSSDTLVTLDTTRSILVTVSFKNRKIAFQETH 264 (981)
Q Consensus 190 ~Vyvvg~~g~~~~~v~aLd~~tG~~lw~~~v~~p~~~~~~~~~vg~~~lv~~d~~~g~L~v~~L~sg~~~~~~~~ 264 (981)
........+.+ +-..|..++..+-+.++...+. ..-.-+...+-|.-..+|+-...-.-++-+.+.++.
T Consensus 245 rywL~~at~~s---IkIwdl~~~~~v~~l~~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 245 RYWLCAATATS---IKIWDLESKAVVEELKLDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ceeEeeccCCc---eEEEeccchhhhhhcccccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
No 230
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=1.2e+03 Score=26.45 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=56.5
Q ss_pred ccCceeeeeeeecccCCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEcc--CCEEEEEeCC
Q 002016 37 YIGKVKHAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSD--GSTLRAWNLP 114 (981)
Q Consensus 37 ~vG~~~~~~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~--g~~V~A~da~ 114 (981)
+.|++.+-.|+. ++..+.+.+++..|.-.|..+|+.+=...-..-+ ++...-......+.-++. +..+|-++..
T Consensus 13 ~~~~i~sl~fs~---~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG-~~~~~Fth~~~~~i~sStk~d~tIryLsl~ 88 (311)
T KOG1446|consen 13 TNGKINSLDFSD---DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYG-VDLACFTHHSNTVIHSSTKEDDTIRYLSLH 88 (311)
T ss_pred CCCceeEEEecC---CCCEEEEecCCCeEEEEEcCCCceeeEeeccccc-ccEEEEecCCceEEEccCCCCCceEEEEee
Confidence 345555555662 3667888899999999999999877665544322 222212233334443443 5689999999
Q ss_pred CCcEeEEEeccCcc
Q 002016 115 DGQMVWESFLRGSK 128 (981)
Q Consensus 115 tG~llWe~~~~~~~ 128 (981)
|-+-+--+......
T Consensus 89 dNkylRYF~GH~~~ 102 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKR 102 (311)
T ss_pred cCceEEEcCCCCce
Confidence 98888777666543
No 231
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=20.85 E-value=1.3e+03 Score=26.35 Aligned_cols=145 Identities=10% Similarity=0.017 Sum_probs=74.3
Q ss_pred CCCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccccC
Q 002016 52 GRKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKHSK 131 (981)
Q Consensus 52 ~~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~s~ 131 (981)
..+.+.+++-+|.|.-.|...-+.+=....+.+ +... .-.++..+++|+-++.|+-+|.++|...==-....+..
T Consensus 24 ~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~p--lL~c-~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~i~-- 98 (323)
T KOG1036|consen 24 SSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAP--LLDC-AFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEGIR-- 98 (323)
T ss_pred cCCcEEEEeccCcEEEEeccchhhhhheecCCc--eeee-eccCCceEEEeccCceEEEEEecCCcceeeccCCCceE--
Confidence 356799999999887777655443333332222 2222 12445566667767899999999987652211111111
Q ss_pred CceeecccccccCCcEEEEE-eCCEEEEEECCCCcEeEEEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECC
Q 002016 132 PLLLVPTNLKVDKDSLILVS-SKGCLHAVSSIDGEILWTRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAM 210 (981)
Q Consensus 132 ~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~tG~~~W~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~ 210 (981)
-.... ...+.|+.. +|+++...|+.+-.+.=....+. ..+.+ ...++.+.| |.++. +|..+|+.
T Consensus 99 ci~~~------~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k---kVy~~--~v~g~~LvV-g~~~r---~v~iyDLR 163 (323)
T KOG1036|consen 99 CIEYS------YEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK---KVYCM--DVSGNRLVV-GTSDR---KVLIYDLR 163 (323)
T ss_pred EEEee------ccCCeEEEcccCccEEEEeccccccccccccCc---eEEEE--eccCCEEEE-eecCc---eEEEEEcc
Confidence 11111 123344444 68888877776511111111111 11112 234444443 44443 57778887
Q ss_pred CCceee
Q 002016 211 NGELLN 216 (981)
Q Consensus 211 tG~~lw 216 (981)
+=..--
T Consensus 164 n~~~~~ 169 (323)
T KOG1036|consen 164 NLDEPF 169 (323)
T ss_pred cccchh
Confidence 654433
No 232
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=20.70 E-value=4.7e+02 Score=32.20 Aligned_cols=70 Identities=11% Similarity=0.176 Sum_probs=43.4
Q ss_pred CCEEEEEcCCCEEEEEECCCCccceEEEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCCCCcEeEEEeccCccc
Q 002016 53 RKRVVVSTEENVIASLDLRHGEIFWRHVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLPDGQMVWESFLRGSKH 129 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~ivWR~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~tG~llWe~~~~~~~~ 129 (981)
.+.++++|++| |.-+|+.+|+++=+-.......|..+.....+.+.+ +++. -++-.+++. |++.-....+
T Consensus 175 ~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg~LWV-GTdq-Gv~~~e~~G----~~~sn~~~~l 244 (671)
T COG3292 175 NGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQGRLWV-GTDQ-GVYLQEAEG----WRASNWGPML 244 (671)
T ss_pred cCcEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcCcEEE-Eecc-ceEEEchhh----ccccccCCCC
Confidence 56799999999 888999999886554333322343331223444544 5553 366666654 8877665544
No 233
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=20.69 E-value=4.3e+02 Score=34.71 Aligned_cols=45 Identities=13% Similarity=0.123 Sum_probs=35.6
Q ss_pred CCCceEecccCCceEEEEEecCCCCCCcCCCCCCCcEEEEEEEEceeceEEEEEeecCCC
Q 002016 696 SEQDVMYKYISKNLLFVATVAPKASGHIGSADPDEAWLVVYLIDTITGRILHRMTHHGAQ 755 (981)
Q Consensus 696 gdrsVlYKYLNPNl~~v~t~~~~~~~~~~~~~~~~~~l~v~liD~VtG~il~s~~h~~~~ 755 (981)
+++++.++-.|.+.++|++.+. .|...++| ++|+..==..|+..+
T Consensus 538 ~~~~Iv~~avnr~qiVvalSng--------------elvyfe~d-~sgql~E~~er~tl~ 582 (1205)
T KOG1898|consen 538 ERVRIVKCAVNRRQIVVALSNG--------------ELVYFEGD-VSGQLNEFTERVTLS 582 (1205)
T ss_pred CceEEEEEeecceEEEEEccCC--------------eEEEEEec-cCccceeeeeeeeec
Confidence 3688899999999999999885 57777888 999987555565544
No 234
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.64 E-value=1.3e+03 Score=28.29 Aligned_cols=115 Identities=12% Similarity=0.153 Sum_probs=66.1
Q ss_pred cCeEEEEEc-cCCEEEEEeCCCCcEeEEEeccCccccCCceeeccc--ccccCCcEEEEEeCCEEEEEECC-CC--cEeE
Q 002016 95 GKYVITLSS-DGSTLRAWNLPDGQMVWESFLRGSKHSKPLLLVPTN--LKVDKDSLILVSSKGCLHAVSSI-DG--EILW 168 (981)
Q Consensus 95 ~~~vV~Vs~-~g~~V~A~da~tG~llWe~~~~~~~~s~~~~~v~~~--~~~~~~~~V~V~~~g~l~aLd~~-tG--~~~W 168 (981)
...+++.++ ....++-+|.+.|+++=+|.+....- -..+-|.. ........++.+++.+|.++|+. .| +..|
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~--mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~ 421 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDIN--MVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAV 421 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcc--eeeccCCcchhcccccccEEeecCCceEEecccccCcceeee
Confidence 345666644 34679999999999998887765411 00011100 00112334555789999999874 22 3557
Q ss_pred EEeccCcceeeeEEEEeecCCeEEEEEecCCceeEEEEEECCCCceee
Q 002016 169 TRDFAAESVEVQQVIQLDESDQIYVVGYAGSSQFHAYQINAMNGELLN 216 (981)
Q Consensus 169 ~~~~~~~~~~~~~vv~s~~~~~Vyvvg~~g~~~~~v~aLd~~tG~~lw 216 (981)
.....-..-.-+++...+.+|.+.+.+..|. +++ +|. .|....
T Consensus 422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS~~Gd--IRL--Ydr-i~~~AK 464 (644)
T KOG2395|consen 422 VQSKQYSTKNNFSCFATTESGYIVVGSLKGD--IRL--YDR-IGRRAK 464 (644)
T ss_pred eeccccccccccceeeecCCceEEEeecCCc--EEe--ehh-hhhhhh
Confidence 7655432222456665567888887777663 344 454 555443
No 235
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=20.51 E-value=74 Score=32.01 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=42.9
Q ss_pred eccCCCcceeEEEEEcCeEEEEEecCC-------CccccCCCCCCh-------hhHHHHHHHHHHHHHhhHHHHHhH---
Q 002016 912 TVPAKLESTTLVFAYGVDLFYTRLAPS-------RTYDSLTEDFSY-------ALLLLTIVALVAAIFVTWVLSEKK--- 974 (981)
Q Consensus 912 t~Pt~LESTslV~a~G~DiF~Trv~PS-------~~FDiL~~~Fnk-------~~L~~ti~~L~~~~~v~~~~~~~K--- 974 (981)
-.||++|=--||. |+-.+| =+||+|..-.|| +++.+||+|.++.++--|..++|.
T Consensus 53 ~~pt~~dKkiLvw--------tgrfKs~~eIPe~Vs~e~l~~arnk~RIkv~~~Mi~lTiiGc~~mv~sGK~aa~r~esl 124 (146)
T PF06388_consen 53 HKPTDFDKKILVW--------TGRFKSEEEIPETVSFEMLDAARNKARIKVCYIMIALTIIGCIAMVISGKRAAKRGESL 124 (146)
T ss_pred cCCcchhhhhhhh--------ccccCChhhCcCccCHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhHhhccCcH
Confidence 4577777666553 333333 468888776665 677899999999999999988886
Q ss_pred -HHHhhc
Q 002016 975 -ELREKW 980 (981)
Q Consensus 975 -~L~~~W 980 (981)
.+|..|
T Consensus 125 t~~Nle~ 131 (146)
T PF06388_consen 125 TKQNLEW 131 (146)
T ss_pred HHHhHHH
Confidence 455555
No 236
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.09 E-value=1.3e+03 Score=26.34 Aligned_cols=77 Identities=21% Similarity=0.455 Sum_probs=50.3
Q ss_pred eeeecccCCCEEEEEcCCCEEEEEECCCCccceEEE--cCCC-cceeeeee-eecCeEEEEEccCCEEEEEeCCCCcEeE
Q 002016 45 VFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHV--LGIN-DVVDGIDI-ALGKYVITLSSDGSTLRAWNLPDGQMVW 120 (981)
Q Consensus 45 ~f~~~~~~~~~VyvaT~~g~L~ALd~~tG~ivWR~~--l~~~-~~i~~l~~-~~~~~vV~Vs~~g~~V~A~da~tG~llW 120 (981)
.|..|.. ...++-++++|.+...+..+ |.-. +... ..+..+.. +.+.-.+.|+++ +.+|.||.-.|+.-.
T Consensus 90 ~F~~~~S-~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D-~~lr~WNLV~Gr~a~ 163 (362)
T KOG0294|consen 90 KFYPPLS-KSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSGKLALSVGGD-QVLRTWNLVRGRVAF 163 (362)
T ss_pred EecCCcc-hhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCCceEEEEcCC-ceeeeehhhcCccce
Confidence 5665543 34699999999999998765 7321 1111 12333322 245556677775 599999999999988
Q ss_pred EEeccCc
Q 002016 121 ESFLRGS 127 (981)
Q Consensus 121 e~~~~~~ 127 (981)
-.++...
T Consensus 164 v~~L~~~ 170 (362)
T KOG0294|consen 164 VLNLKNK 170 (362)
T ss_pred eeccCCc
Confidence 8877654
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=20.05 E-value=1.3e+03 Score=26.20 Aligned_cols=110 Identities=14% Similarity=0.282 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCEEEEEECCCCcc----ceE-EEcCCCcceeeeeeeecCeEEEEEccCCEEEEEeCC-CCcEeEE-Eecc
Q 002016 53 RKRVVVSTEENVIASLDLRHGEI----FWR-HVLGINDVVDGIDIALGKYVITLSSDGSTLRAWNLP-DGQMVWE-SFLR 125 (981)
Q Consensus 53 ~~~VyvaT~~g~L~ALd~~tG~i----vWR-~~l~~~~~i~~l~~~~~~~vV~Vs~~g~~V~A~da~-tG~llWe-~~~~ 125 (981)
+..+|+...+|.+.-++-..+.+ -|+ ++++... ..+ -....++|+-||+++.+++||.. -++-+|+ .+..
T Consensus 133 ~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wt--a~f-~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH 209 (339)
T KOG0280|consen 133 GTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWT--AKF-SDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVH 209 (339)
T ss_pred CceEEEEcCCCcEEEEecceeeeeecccccccceeeee--eec-ccCCCceEEecCCCceEEEEEecCCcceeeecceee
Confidence 45578887888777665544432 122 1111110 000 01233688878888999999998 7889998 3333
Q ss_pred C-ccccCCceeecccccccCCcEEEEE-eCCEEEEEECC-CCcEeEEEec
Q 002016 126 G-SKHSKPLLLVPTNLKVDKDSLILVS-SKGCLHAVSSI-DGEILWTRDF 172 (981)
Q Consensus 126 ~-~~~s~~~~~v~~~~~~~~~~~V~V~-~~g~l~aLd~~-tG~~~W~~~~ 172 (981)
. ++. .+-. ...+.-.++.. .|..+..+|.. =|+++-..+.
T Consensus 210 ~~GV~-----SI~s--s~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v 252 (339)
T KOG0280|consen 210 TSGVV-----SIYS--SPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV 252 (339)
T ss_pred ecceE-----EEec--CCCCCceEEEeccccceeeeehhcccCccccCcc
Confidence 2 222 1101 01123345555 47888888876 4555444333
Done!