BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002017
(981 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LF41|UBE4_ARATH Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana
GN=PUB1 PE=1 SV=1
Length = 1038
Score = 1403 bits (3632), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 719/1051 (68%), Positives = 830/1051 (78%), Gaps = 83/1051 (7%)
Query: 1 MATTKPQRSPEEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDL 60
MAT+KPQRSP EIEDIILRKIF VTL E +TD+DPRI YLE+TAAE+LSEGK++ LSRDL
Sbjct: 1 MATSKPQRSPAEIEDIILRKIFYVTLTE-STDSDPRIVYLEMTAAEILSEGKELLLSRDL 59
Query: 61 MERVLVDRLSGNFPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMI 120
MERVL+DRLSG+F AEPPF YLI C+RRA+DE KKI +MKDKNLRSE+E V KQAKK+
Sbjct: 60 MERVLIDRLSGDFSDAEPPFPYLIGCHRRAYDESKKIQSMKDKNLRSEMEIVTKQAKKLA 119
Query: 121 VSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGG-IDGFGNSTSSGS 179
VSYCRIHL NPD FG+++ + ++N K ++SP+LP IFAEVG G +D FG ++SSG
Sbjct: 120 VSYCRIHLGNPDMFGNSDKPSGGLDNRLKKRNVSPVLPLIFAEVGSGSLDMFG-ASSSGV 178
Query: 180 QCPPGFLKEFFEEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGV 239
Q PPGFL EFF+++DFD+LD ILK LYE+LR +V+NVS LG+FQ PLRAL YLVS PVG
Sbjct: 179 QAPPGFLDEFFKDSDFDSLDSILKELYEDLRSTVINVSVLGDFQPPLRALKYLVSLPVGA 238
Query: 240 KSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRR 299
KSLV+H+WW+P+ Y+NGR +E+TSILGPFFH+SALPD+ +FKSQPDVGQQCFSEAS RR
Sbjct: 239 KSLVSHEWWVPRGAYMNGRAMELTSILGPFFHISALPDNTLFKSQPDVGQQCFSEASERR 298
Query: 300 PADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRAHIQVEP 359
PADLLSSF+TIK M LY L DVL+ LLK+TDTRE VL++LAEVIN N+SRAHIQV+P
Sbjct: 299 PADLLSSFSTIKNFMNILYSGLHDVLMILLKSTDTRERVLQFLAEVINANASRAHIQVDP 358
Query: 360 LSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEV 419
+SCASSGMFVNLSAVMLRLC+PFLD +LTKRDKIDPKY F RL L LTALHASSEEV
Sbjct: 359 VSCASSGMFVNLSAVMLRLCEPFLDPHLTKRDKIDPKYAFCGHRLKLSDLTALHASSEEV 418
Query: 420 SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPF 479
+EWI K A A+ + + E++LLQS+EATSSS AS G+ A +KY F
Sbjct: 419 TEWIGKDAMANANDAGRENGNESRLLQSKEATSSSSNAS------GQNAK---SATKYTF 469
Query: 480 ICECFFMTARVL-----------------------NLGLLKAFSD---FKHLVQDISRAE 513
ICECFFMTARVL NL LKA D L DISR E
Sbjct: 470 ICECFFMTARVLNLGLLKALSDFKHLAQDISRGEDNLATLKAMRDQAPSPQLELDISRME 529
Query: 514 DTLATLKATQGQTPSSQL------------------------------------NLEITR 537
L L + + +Q+ +E +
Sbjct: 530 KEL-ELSSQEKLCHEAQILRDGDFIQRALSFYRLMVVWLVGLVGGFKMPLPSTCPMEFSC 588
Query: 538 IEKEIELSSQEKLCYEAQILR-------DDFMNFIIMFMASPKYIRNPYLRSKMVEVLNC 590
+ + + E L + ++I + DDFMNFIIMFMASP+Y+RNPYLR+KMVEVLNC
Sbjct: 589 MPEHFVEDAMELLIFASRIPKALDGVPLDDFMNFIIMFMASPEYVRNPYLRAKMVEVLNC 648
Query: 591 WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL 650
WMPR S SSSAT+TLFEGHQ+SLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL
Sbjct: 649 WMPRSSSSSSATSTLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELL 708
Query: 651 EYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNT 710
EYLWQVPSHRNAWR+IAK+EEKGVYLNFLNFL+NDSIYLLDESLNKILE+K IEA+MSNT
Sbjct: 709 EYLWQVPSHRNAWRRIAKDEEKGVYLNFLNFLVNDSIYLLDESLNKILEIKQIEADMSNT 768
Query: 711 AEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVA 770
AEWE+RP QERQERTRLFHSQENI+RIDMKLANEDV+MLAFTSE+I APFLLPEM+ERVA
Sbjct: 769 AEWEQRPTQERQERTRLFHSQENIVRIDMKLANEDVTMLAFTSEEITAPFLLPEMVERVA 828
Query: 771 SMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSD 830
+MLNYFLLQLVGPQRKSL+LKDPEKYEFRPKQLLKQIV IYV+LARGDT N+FP AISSD
Sbjct: 829 NMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKQLLKQIVRIYVNLARGDTVNIFPGAISSD 888
Query: 831 GRSYNEQLFSAAADVLWKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDP 890
GRSYNEQLF+A ADVL +IGE+GRIIQEF+ELG KAKAAASEA+DAEAALG+IPDEFLDP
Sbjct: 889 GRSYNEQLFNAGADVLRRIGEEGRIIQEFMELGTKAKAAASEALDAEAALGEIPDEFLDP 948
Query: 891 IQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 950
IQYTLM+DPVILPSSRITVDRP+IQRHLLSD DPFNR+HLT+DMLIP+ ELKAKI+EF+
Sbjct: 949 IQYTLMRDPVILPSSRITVDRPIIQRHLLSDNHDPFNRAHLTSDMLIPDIELKAKIDEFV 1008
Query: 951 KSQGLKRHGEGLNIQSIKDTIQTTNGDMLID 981
KS K+ G + S K+ IQTTN DMLID
Sbjct: 1009 KSHQSKKRTSGED-SSNKERIQTTNSDMLID 1038
>sp|A5PKG6|UBE4A_BOVIN Ubiquitin conjugation factor E4 A OS=Bos taurus GN=UBE4A PE=2 SV=1
Length = 1067
Score = 288 bits (736), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 159/402 (39%), Positives = 240/402 (59%), Gaps = 17/402 (4%)
Query: 562 MNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQMSLEY----- 615
++FI +F S + ++NP+LR+K+ EVL MP + + +++F ++ +
Sbjct: 658 LHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHMDQTPNPLVSSVFHRKRVFCNFPYASH 717
Query: 616 LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV- 674
L L+K++VDIEFTG QF KFN R + +L+Y+W ++R + + +A K +
Sbjct: 718 LAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILKYMWGTDTYRESIKDLADYASKNLE 777
Query: 675 ------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLF 728
+L FLN L+ND+I+LLDE++ + ++K+ + E + EW+ + R+E+
Sbjct: 778 AMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDNLTPEARREKEAGL 836
Query: 729 HSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSL 788
+ R ++NE + LAF + +I + F+ P + ER+ SMLNYFL LVGP+ +L
Sbjct: 837 QMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGAL 896
Query: 789 TLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK 848
+KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+ LF+ VL K
Sbjct: 897 KVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKK 953
Query: 849 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 908
I + G +I F L + K+ A E D DEFLDPI TLM DPV+LPSSR+T
Sbjct: 954 INKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVT 1013
Query: 909 VDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 950
VDR I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 1014 VDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 92/429 (21%), Positives = 159/429 (37%), Gaps = 97/429 (22%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEGKDM----RLSRDLME 62
++++IFL+TL+ ++DP R YLE A +L E +D + + +
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVDL--EDQDWLDMNNVEQAVFT 140
Query: 63 RVLVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLR 106
R+L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 141 RLLLQDPGNHLINMTSSTTLNLSADRDAGEKHIFCYLYSCFQRAKEEITKVP-------- 192
Query: 107 SELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGG 166
L Q + + VS R L P+ + N + ++ + A +GG
Sbjct: 193 ENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIHEQLVD------------LMVEAILGG 240
Query: 167 GIDGFGNSTSSGSQCPPGFLKEFFEEADFD--------TLDPILKGLYENLRGSVLNVSA 218
+ FL E E D + P+ L ++ L
Sbjct: 241 HFESVAE-----------FLDEVIEALILDEEVRTFPEVMIPVFDILSSRIKDLELCQIL 289
Query: 219 LGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDH 278
L + L LLY K V+ +I NG++ + T +LG ++S L
Sbjct: 290 LYAY---LDILLYFTKQKDMAKVFVD---YIQPKDPSNGQMYQKT-LLGVILNISCL--- 339
Query: 279 AIFKSQPDV--GQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTR 335
P V F S P ++ I M ++ + +L LL+ + +T+
Sbjct: 340 ---LKTPGVIENHGYFLNPSRSSPQEIKVQEANIHQFMARYHEKIYQMLKNLLQLSPETK 396
Query: 336 ENVLEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTK 389
+L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 397 HCILSWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSR 456
Query: 390 RDKIDPKYV 398
+P Y
Sbjct: 457 LLTFNPTYC 465
>sp|Q14139|UBE4A_HUMAN Ubiquitin conjugation factor E4 A OS=Homo sapiens GN=UBE4A PE=1 SV=2
Length = 1066
Score = 286 bits (732), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 159/402 (39%), Positives = 239/402 (59%), Gaps = 17/402 (4%)
Query: 562 MNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQMSLEY----- 615
++FI +F S + ++NP+LR+K+ EVL MP + + +++F ++ +
Sbjct: 658 LHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQYAPQ 717
Query: 616 LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV- 674
L L+K++VDIEFTG QF KFN R + +L Y+W ++R + + +A K +
Sbjct: 718 LAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLE 777
Query: 675 ------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLF 728
+L FLN L+ND+I+LLDE++ + ++K+ + E + EW+ + R+E+
Sbjct: 778 AMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTPEARREKEAGL 836
Query: 729 HSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSL 788
+ R ++NE + LAF + +I + F+ P + ER+ SMLNYFL LVGP+ +L
Sbjct: 837 QMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGAL 896
Query: 789 TLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK 848
+KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+ LF+ VL K
Sbjct: 897 KVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKK 953
Query: 849 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 908
I + G +I F L + K+ A E D DEFLDPI TLM DPV+LPSSR+T
Sbjct: 954 INKPGNMIMAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVT 1013
Query: 909 VDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 950
VDR I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 1014 VDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 163/424 (38%), Gaps = 87/424 (20%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + L R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVELEDQDWLDMSNVEQALFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 241 -HFEDVTE--------FLEEVIEALILDEEVRTFPEVMIPVFDILLGRIKDLELCQILLY 291
Query: 225 P-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKS 283
L LLY K V ++ PK NG++ + T +LG +S L
Sbjct: 292 AYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILSISCL------LK 341
Query: 284 QPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLE 340
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 342 TPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILS 401
Query: 341 YLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKID 394
+L ++ N+ R I + AS F+NL A +L+LC PF ++ +
Sbjct: 402 WLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFN 461
Query: 395 PKYV 398
P Y
Sbjct: 462 PTYC 465
>sp|Q5R9G3|UBE4A_PONAB Ubiquitin conjugation factor E4 A OS=Pongo abelii GN=UBE4A PE=2 SV=2
Length = 1066
Score = 286 bits (731), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 159/402 (39%), Positives = 239/402 (59%), Gaps = 17/402 (4%)
Query: 562 MNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQMSLEY----- 615
++FI +F S + ++NP+LR+K+ EVL MP + + +++F ++ +
Sbjct: 658 LHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPNPLVSSVFHRKRVFCNFQYAPQ 717
Query: 616 LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV- 674
L L+K++VDIEFTG QF KFN R + +L Y+W ++R + + +A K +
Sbjct: 718 LAEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDTYRESIKDLADYASKNLE 777
Query: 675 ------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLF 728
+L FLN L+ND+I+LLDE++ + ++K+ + E + EW+ + R+E+
Sbjct: 778 AMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWDSLTPEARREKEAGL 836
Query: 729 HSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSL 788
+ R ++NE + LAF + +I + F+ P + ER+ SMLNYFL LVGP+ +L
Sbjct: 837 QMFGQLARFHNIMSNETIGTLAFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGAL 896
Query: 789 TLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK 848
+KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+ LF+ VL K
Sbjct: 897 KVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKK 953
Query: 849 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 908
I + G +I F L + K+ A E D DEFLDPI TLM DPV+LPSSR+T
Sbjct: 954 INKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVT 1013
Query: 909 VDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 950
VDR I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 1014 VDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 95/424 (22%), Positives = 164/424 (38%), Gaps = 87/424 (20%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEG-KDM-RLSRDLMERV 64
++++IFL+TL+ ++DP R YLE A EL + DM + + L R+
Sbjct: 87 MIQRIFLITLD----NSDPSLKSGNGIPSRCVYLEEMAVELEDQDWLDMGNVEQALFARL 142
Query: 65 LVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLRSE 108
L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 143 LLQDPGNHLINMTSSTTLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP--------EN 194
Query: 109 LEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGI 168
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 195 LLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQGA- 240
Query: 169 DGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNFQQ 224
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 241 -HFEDVTE--------FLEEVIEALILDEEVRTFSEVMIPVFDILLGRIKDLELCQILLY 291
Query: 225 P-LRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKS 283
L LLY K V ++ PK NG++ + T +LG ++S L
Sbjct: 292 AYLDILLYFTRQKDMAKVFV--EYIQPKDP-TNGQMYQKT-LLGVILNISCL------LK 341
Query: 284 QPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTRENVLE 340
P V + F S P ++ I M ++ + +L LL+ + +T+ +L
Sbjct: 342 TPGVVENHGYFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHCILS 401
Query: 341 YLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRDKID 394
+L ++ N+ R I + AS F+NL A +L+LC PF ++ +
Sbjct: 402 WLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLLTFN 461
Query: 395 PKYV 398
P Y
Sbjct: 462 PTYC 465
>sp|Q6P7A2|UBE4A_RAT Ubiquitin conjugation factor E4 A OS=Rattus norvegicus GN=Ube4a PE=2
SV=1
Length = 1066
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 160/402 (39%), Positives = 238/402 (59%), Gaps = 17/402 (4%)
Query: 562 MNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSA-TATLFEGHQMSLEY----- 615
++FI +F S + ++NP+LR+K+ EVL MP + S +++F ++ +
Sbjct: 658 LHFITIFTGSIERMKNPHLRAKLAEVLEAVMPHLDQTPSPLVSSVFHRKRVFCNFPYAPQ 717
Query: 616 LVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGV- 674
L L+K++VDIEFTG QF KFN R + +L Y+W S+R + + +A K +
Sbjct: 718 LSEALIKVFVDIEFTGDPHQFEQKFNYRRPMYPILRYMWGTDSYRESIKDLADYASKNLE 777
Query: 675 ------YLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLF 728
+L FLN L+ND+I+LLDE++ + ++K+ + E + EWE + R+E+
Sbjct: 778 AMNPPLFLRFLNLLMNDAIFLLDEAIQYLSKIKIQQIE-KDRGEWESLTPEARREKEAGL 836
Query: 729 HSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSL 788
+ R ++NE + L+F + +I + F+ P + ER+ SMLNYFL LVGP+ +L
Sbjct: 837 QMFGQLARFHNIMSNETIGTLSFLTSEIKSLFVHPFLAERIISMLNYFLQHLVGPKMGAL 896
Query: 789 TLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWK 848
+KD +++F+P+QL+ I IY++L GD +N F A + DGRSY+ LF+ VL K
Sbjct: 897 KVKDFSEFDFKPQQLVSDICTIYLNL--GDEEN-FCATVPKDGRSYSPTLFAQTVRVLKK 953
Query: 849 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 908
I + G +I F L + K+ A E D DEFLDPI TLM DPV+LPSSR+T
Sbjct: 954 INKPGNMIVAFSNLAERIKSLADLQQQEEETYADACDEFLDPIMSTLMSDPVVLPSSRVT 1013
Query: 909 VDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFI 950
VD I RHLLSD TDPFNRS LT D + PNTELK KI+ ++
Sbjct: 1014 VDGSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWL 1055
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 94/427 (22%), Positives = 168/427 (39%), Gaps = 93/427 (21%)
Query: 17 ILRKIFLVTLNEATTDADP----------RIAYLELTAAELLSEGKDM----RLSRDLME 62
++++IFL+TL+ ++DP R YLE A EL E +D + + +
Sbjct: 87 MIQRIFLITLD----NSDPNLKSGNGIPSRCVYLEEMAVEL--EDQDWLDMSNVEQAIFA 140
Query: 63 RVLVD---------------RLSGNFPAAEPP-FLYLINCYRRAHDELKKIGNMKDKNLR 106
R+L+ LS + A E F YL +C++RA +E+ K+
Sbjct: 141 RLLLQDPGNHLISMTSSATLNLSADRDAGERHIFCYLYSCFQRAKEEITKVP-------- 192
Query: 107 SELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGG 166
L Q + + VS R L P+ + N + L+ + + G
Sbjct: 193 ENLLPFAVQCRNLTVSNTRTVLLTPEIYVDQNIH-------------EQLVDLMLEAIQG 239
Query: 167 GIDGFGNSTSSGSQCPPGFLKEFFEEADFD----TLDPILKGLYENLRGSVLNVSALGNF 222
F + T FL+E E D T ++ +++ L G + ++
Sbjct: 240 A--HFEDVTE--------FLEEVIEALLLDEEVRTFPEVMIPVFDILLGRIKDLELC--- 286
Query: 223 QQPLRALLYLVSFPVGVKSL--VNHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAI 280
Q L A L ++ + K + V ++ PK NG++ + T +LG ++S L
Sbjct: 287 QILLYAYLDILLYFTRQKDMAKVFLEYIQPKDPS-NGQMYQKT-LLGVILNISCL----- 339
Query: 281 FKSQPDVGQQ--CFSEASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLK-NTDTREN 337
P V + F S P ++ I M ++ + +L LL+ + +T+
Sbjct: 340 -LKTPGVVENHGFFLNPSRSSPQEIKVQEANIHQFMAQFHEKIYQMLKNLLQLSPETKHG 398
Query: 338 VLEYLAEVINRNSSRAHIQVEPLS------CASSGMFVNLSAVMLRLCDPFLDANLTKRD 391
+L +L ++ N+ R I + AS F+NL A +L+LC PF ++
Sbjct: 399 ILFWLGNCLHANAGRTKIWANQMPEIFFQMYASDAFFLNLGAALLKLCQPFCKPRSSRLL 458
Query: 392 KIDPKYV 398
+P Y
Sbjct: 459 TFNPTYC 465
>sp|Q9ES00|UBE4B_MOUSE Ubiquitin conjugation factor E4 B OS=Mus musculus GN=Ube4b PE=1 SV=3
Length = 1173
Score = 277 bits (708), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 155/414 (37%), Positives = 239/414 (57%), Gaps = 16/414 (3%)
Query: 552 YEAQILRD----DFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFE 607
Y Q+L + D + F+++ + + YIRNPYL +K+VEV+ P + + E
Sbjct: 769 YSPQVLYEPCTQDIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPSVQPRTQKFFEMIE 828
Query: 608 GHQMSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIA 667
H +S + LV +L+K Y D+E TG+ ++FYDKF IR++I+ + + LWQ +H + +
Sbjct: 829 NHPLSTKLLVPSLMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEF 888
Query: 668 KEEEKGVYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRL 727
++ ++ ++N LIND+ +LLDESL + + ++ EM N +W++ P ++Q R
Sbjct: 889 NSGKQ--FVRYINMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQ 946
Query: 728 FHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKS 787
E + R + LA E V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ +
Sbjct: 947 LAQDERVSRSYLALATETVDMFHLLTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRD 1006
Query: 788 LTLKDPEKYEFRPKQLLKQIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADV 845
L +++PEKY F PK+LL Q+ IY+ L AR F AI+ D RSY+++LF
Sbjct: 1007 LKVENPEKYGFEPKKLLDQLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISK 1060
Query: 846 LWKIGEDGRI-IQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPS 904
+ K G I I++F L K + ++ AE D PDEF DP+ TLM DPV LPS
Sbjct: 1061 MRKAGIKSTIAIEKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPS 1120
Query: 905 SRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 958
+ +DR +I RHLL+ TDPFNR LT ML P ELK +I+ +++ + H
Sbjct: 1121 GTV-MDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQSSDH 1173
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 96/410 (23%), Positives = 163/410 (39%), Gaps = 84/410 (20%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L F+ PL AL L
Sbjct: 369 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLESDY---FKYPLMALGELCET 425
Query: 236 PVG-----VKSLVNHQWWIPKSVYL-NGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G + + W+PKS+ +GR ++ S LG FF S + V +
Sbjct: 426 KFGKTHPMCNLVASLPLWLPKSLSPGSGRELQRLSYLGAFFSFSVFAE-----DDAKVVE 480
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 481 KYFS-----GPAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 534
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS-SR 403
++N N +A +Q + ++ G +NL V+ +L + K + +DP Y+F+ R
Sbjct: 535 LVNANMKKAQMQADDRLVSTDGFMLNLLWVLQQL------STKIKLETVDPTYIFHPRCR 588
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V+E + E SEP
Sbjct: 589 ITLPNDETRINATMEDVNERLT------------------------ELYGDQPPFSEPKF 624
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 625 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 667
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDDFMNFIIMF 568
+ Q S L + R + +++ + K C +A +L + F+ + F
Sbjct: 668 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNF 717
>sp|O95155|UBE4B_HUMAN Ubiquitin conjugation factor E4 B OS=Homo sapiens GN=UBE4B PE=1 SV=1
Length = 1302
Score = 275 bits (704), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 153/402 (38%), Positives = 234/402 (58%), Gaps = 12/402 (2%)
Query: 560 DFMNFIIMFMASPKYIRNPYLRSKMVEVLNCWMPRRSGSSSATATLFEGHQMSLEYLVRN 619
D + F+++ + + YIRNPYL +K+VEV+ P + + E H +S + LV +
Sbjct: 910 DIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPS 969
Query: 620 LLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFL 679
L+K Y D+E TG+ ++FYDKF IR++I+ + + LWQ +H + + ++ ++ ++
Sbjct: 970 LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQ--FVRYI 1027
Query: 680 NFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDM 739
N LIND+ +LLDESL + + ++ EM N +W++ P ++Q R E + R +
Sbjct: 1028 NMLINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPRDQQQARQSQLAQDERVSRSYL 1087
Query: 740 KLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFR 799
LA E V M ++Q+ PFL PE+ R+A+MLN+ L QL GP+ + L +++PEKY F
Sbjct: 1088 ALATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFE 1147
Query: 800 PKQLLKQIVCIYVHL--ARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGRI-I 856
PK+LL Q+ IY+ L AR F AI+ D RSY+++LF + K G I I
Sbjct: 1148 PKKLLDQLTDIYLQLDCAR------FAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAI 1201
Query: 857 QEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQR 916
++F L K + ++ AE D PDEF DP+ TLM DPV LPS I +DR +I R
Sbjct: 1202 EKFKLLAEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILR 1260
Query: 917 HLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLKRH 958
HLL+ TDPFNR LT ML P ELK +I+ +++ + H
Sbjct: 1261 HLLNSPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQNSDH 1302
Score = 74.3 bits (181), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 99/410 (24%), Positives = 168/410 (40%), Gaps = 84/410 (20%)
Query: 182 PPGFLKEFF------EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSF 235
P GF++E EE PIL+GL + L+ F+ PL AL L
Sbjct: 498 PYGFIQELVRTTHQDEEVFKQIFIPILQGLALAAKECSLDSDY---FKYPLMALGELCET 554
Query: 236 PVG----VKSLV-NHQWWIPKSVYLN-GRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQ 289
G V +LV + + W+PKS+ GR ++ S LG FF S + + V +
Sbjct: 555 KFGKTHPVCNLVASLRLWLPKSLSPGCGRELQRLSYLGAFFSFSVFAEDDV-----KVVE 609
Query: 290 QCFSEASTRRPADLLSSFTTIKTVMRGLYKDLG-----DVLLALLKNTDTRENVLEYLAE 344
+ FS PA L + + ++ Y +LG +L ++L N +TRE L Y+A
Sbjct: 610 KYFSG-----PAITLENTRVVSQSLQH-YLELGRQELFKILHSILLNGETREAALSYMAA 663
Query: 345 VINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYS-SR 403
V+N N +A +Q + ++ G +N V+ +L + K + +DP Y+F+ R
Sbjct: 664 VVNANMKKAQMQTDDRLVSTDGFMLNFLWVLQQL------STKIKLETVDPTYIFHPRCR 717
Query: 404 LDL-RSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSL 462
+ L T ++A+ E+V++W+ E SEP
Sbjct: 718 ITLPNDETRVNATMEDVNDWLT------------------------ELYGDQPPFSEPKF 753
Query: 463 PAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKAT 522
P ECFF+T +L +L + + ++ I T+ LK
Sbjct: 754 PT-----------------ECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRTVEDLKNN 796
Query: 523 QGQTPSSQLNLE----ITRIEKEIELSSQEKLCYEAQILRDDFMNFIIMF 568
+ Q S L + R + +++ + K C +A +L + F+ + F
Sbjct: 797 ESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDESFLRRCLNF 846
>sp|P54860|UFD2_YEAST E4 ubiquitin-protein ligase UFD2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=UFD2 PE=1 SV=3
Length = 961
Score = 262 bits (670), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 157/403 (38%), Positives = 240/403 (59%), Gaps = 19/403 (4%)
Query: 561 FMNFIIMFMASPKYIRNPYLRSKMVEVLNCW-MPRRSGSSSATATLFEGHQMSLEYLVRN 619
F+ F M + P+ + NP+L+ K+V++L+ MP S +FE ++ + L+
Sbjct: 558 FVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYA 617
Query: 620 LLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNA--WRQIAKEEEKGVYL 676
LL YV +E TGS +QFYDKFN R++I+ +LE L+ ++PS++N W+ + ++
Sbjct: 618 LLDFYVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQS---QNNADFFV 674
Query: 677 NFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWE--RRPAQERQERTRLFHSQENI 734
F+ ++ND +LLDE L+ + E+ I+ E+ N A R ++++ +TRL S
Sbjct: 675 RFVARMLNDLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRL-ASASRQ 733
Query: 735 IRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPE 794
+ LA++ + + S+ I A F+ PE++ R+ASMLNY L LVGP+ L +KDP+
Sbjct: 734 AKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLVGPKCGELKVKDPQ 793
Query: 795 KYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKIGEDGR 854
Y F PK LLK + +Y++L+ Q+ F +A++ D RS+N LF A D+L + + G
Sbjct: 794 SYSFNPKDLLKALTTVYINLSE---QSEFISAVAKDERSFNRNLFVRAVDILGR--KTGL 848
Query: 855 IIQEFIE--LGAKAKAAASEAMDAEAAL--GDIPDEFLDPIQYTLMKDPVILPSSRITVD 910
EFIE L KA D E L GD+PDEFLDP+ YT+MKDPVILP+S++ +D
Sbjct: 849 ASPEFIEKLLNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNID 908
Query: 911 RPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953
R I+ HLLSD+TDPFNR L + + PN EL+ KI F K +
Sbjct: 909 RSTIKAHLLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQK 951
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 93/432 (21%), Positives = 171/432 (39%), Gaps = 61/432 (14%)
Query: 13 IEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGN 72
IEDI+ + TTD Y L +E + +G L D ++ +L+ +L+ N
Sbjct: 4 IEDIL----------QITTDPSDTRGY-SLLKSEEVPQGS--TLGVDFIDTLLLYQLTEN 50
Query: 73 FPAAEPPFLYLINCYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPD 132
+ PF YL +C+RR + K+I K+K L + ++ ++++ Y + L +
Sbjct: 51 -EKLDKPFEYLNDCFRRNQQQ-KRI--TKNKPNAESLHSTFQEIDRLVIGYGVVALQIEN 106
Query: 133 FFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEE 192
F + NY + G + + T SQ + E
Sbjct: 107 FCMNGAFINY---------------------ITGIVSNVNSYTDFLSQI---IQRAILEG 142
Query: 193 ADFDTLDPILKGLYENLRGSV----LNVSALGNFQQPLRALLYLVSF-PVGVKSLVNHQW 247
D L+ + L E V LN S + N L V+F P+ +
Sbjct: 143 TALDLLNAVFPTLLEYCNKHVSHFDLNESVIYN--NVLTIFELFVTFKPIAEIFTKIDGF 200
Query: 248 WIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSF 307
+ S + E +ILGP +S + + V + + + R
Sbjct: 201 FADYSC--KPQDFERKTILGPILSLSPI--------EAAVAIRNYGDNLLRSKQQTAMIH 250
Query: 308 TTIKTVMRGLYKDLGDVLLALLKNT-DTRENVLEYLAEVINRNSSRAHIQVEPLSCASSG 366
+++ + + L ++ L++ + ++R +++ Y A + N+N R +S+G
Sbjct: 251 ESLQAEHKVVIDRLFFIVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNG 310
Query: 367 MFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSR-LDLRSLTALHASSEEVSEWINK 425
N++ +++R PFLD + K DKID Y S +DL T L++ +E + +K
Sbjct: 311 FMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPSLFIDLSGETRLNSDFKEADAFYDK 370
Query: 426 GNPAKADGSKHF 437
N AD +F
Sbjct: 371 -NRKTADSKPNF 381
>sp|Q9HE05|UFD2_SCHPO Ubiquitin conjugation factor E4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ufd2 PE=2 SV=1
Length = 1010
Score = 253 bits (647), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 263/1017 (25%), Positives = 447/1017 (43%), Gaps = 193/1017 (18%)
Query: 26 LNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLIN 85
LN ++ D YLE +L EG + + + ++ L+ RLS F YL+
Sbjct: 89 LNITLSETDSSKYYLEGFKKDLEEEGSPLLFNENNVDSALLSRLST---TGNNTFSYLLQ 145
Query: 86 CYRRAHDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEIN 145
+ + K++ KD+N ++ + K ++VSY I + PD F S +
Sbjct: 146 SWSFLYQYKKRLP--KDENQDFKIH-YLSLLKSLLVSYAGIVVMLPDTFNSETID----- 197
Query: 146 NSNNKSSISPLLPFIFAEVGGGIDGFGNSTSSGSQCPPGFLKEFFEEADFDTLD----PI 201
AEV G +G P FL EF + + + LD P+
Sbjct: 198 ---------------LAEVLIGAEGI----------PLEFLSEFVQRFEHENLDELFIPV 232
Query: 202 LKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKSLVNHQWWIPKSVYLNGRVIE 261
L+ L +L+ ++NV + ++ +L LVS L W P + N IE
Sbjct: 233 LESL--SLKIGLMNVDTVQ--MNVMQIILQLVSLKPIALLLPKLPSWNPTN---NAGEIE 285
Query: 262 MTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDL 321
+ LG +S+L ++F DV + FS ++ R ++ SS +++K M L
Sbjct: 286 YKTFLG---RISSL---SVFTQ--DVASRYFSNSTERSAQNISSSISSLKLTMSTYQDVL 337
Query: 322 GDVLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCD 380
+ L++ +T RE+VL++ A V+N N R IQV S +N S V+ RL +
Sbjct: 338 FQIFNTLIRTSTSLRESVLDFFAMVVNANHKRQSIQVNHFDITSDACMLNFSHVLSRLSE 397
Query: 381 PFLDANLTKRDKIDPKYVFYSSRLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDG 440
PFLD +K D++ +Y + R+D++ T L+A + + +K A+GS +
Sbjct: 398 PFLDIGCSKIDRVQVEYFRRNPRVDIKEETKLNADQKASESFYSK----PAEGSNN---- 449
Query: 441 ENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFICECFFMTARVLNLGLLKAFS 500
FI + FF+ + G+ F
Sbjct: 450 --------------------------------------FISDIFFLNLAFHHYGVNATFK 471
Query: 501 DFKHLVQDISRAEDTLATLKATQ----GQTPSSQLNLEITRIEKEIELSSQEKLCYEAQI 556
+ LVQ I +E L+ Q G +++L +++R+++ ++L CYE +
Sbjct: 472 ALEQLVQSIRDSEKLKERLETEQQNMSGSFQATRLTAQLSRLDQRLDLDRSFVHCYEIML 531
Query: 557 LRD-------DFMNFIIMFMA------SPKYIRNPY--------------LRSKMVEVLN 589
+ F+NF+ ++++ S Y + P L +E +
Sbjct: 532 TQTSDTSRSFSFLNFVAIWLSRLADGQSSTYPKMPLSLPFNENAPEAFKCLPEYFIETIT 591
Query: 590 CWMPRRSGSSSATATLFEGH---QMSLEYLVR-NLLK-----------LYVDIEFTGSHT 634
+M +SS+T TL + + +L + N +K LY ++ +
Sbjct: 592 DYMLSLFKTSSSTLTLHSLEPLCEFCVSFLTQANYIKNPYLRAKLAEILYFGVQTHVGRS 651
Query: 635 QFY------DKFNIRHNIAELLEYLWQVPS--------------------HRNAWRQIA- 667
+ K R + L+ + ++ S R W+Q A
Sbjct: 652 ELLLDVVRTSKVATRWLLPALMAFYIEIESTGQSTQFYDKFNIRFYICEVFRTIWKQPAY 711
Query: 668 ----KEEEKG---VYLNFLNFLINDSIYLLDESLNKILELKVIEAEMSNTAEWERRPAQE 720
++E+K ++ F+ ++ND+ YLLDE+L K+ E+ +++ +++ A Q
Sbjct: 712 FGKLEQEQKTNLPFFVKFVALMLNDATYLLDEALLKLTEIHNLQSLLAD-AISNSNSNQN 770
Query: 721 RQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQL 780
QE + E +L NE + ML + I F E+++R+A+MLNY L L
Sbjct: 771 VQESQSNLAAAERQASTYCQLGNETIFMLKLFTSSIPKAFCAVEIVDRLAAMLNYNLQAL 830
Query: 781 VGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFS 840
GP+ +L ++DP KY F K LL I +Y++L + F A++ DGRSY++++F
Sbjct: 831 CGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLC---NEPAFVEAVAHDGRSYSKEIFE 887
Query: 841 AAADVL----WKIGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLM 896
A ++ K D I+EF+ + +A + E +GDIPD FLDP+ +T+M
Sbjct: 888 RATSIMTKHNLKSSFDIEAIKEFVN---RVEAFRLQEATEEEDMGDIPDYFLDPLMFTIM 944
Query: 897 KDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953
KDPV+LP S I++DR I+ HLLSDATDPFNR+ LT D + PN L+ +I F+KS+
Sbjct: 945 KDPVVLPRSGISIDRSTIKAHLLSDATDPFNRTPLTLDDVTPNDTLREEINTFLKSK 1001
>sp|Q09349|UBE4_CAEEL Probable ubiquitin conjugation factor E4 OS=Caenorhabditis elegans
GN=ufd-2 PE=2 SV=1
Length = 980
Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 203/851 (23%), Positives = 351/851 (41%), Gaps = 161/851 (18%)
Query: 191 EEADFDTLDPILKGLYENLRGSVLNVSALGNFQQPLRALLYLVSFPVGVKS--------- 241
+E D D + ++ LR ++ N + +R +L +++ + ++
Sbjct: 192 DECDEDAITETFNPIFGILRSGIICQRFEDNKDEIVRQILRVMNLLLSIRLPSNGPRPLS 251
Query: 242 --LVNHQWWIPK-SVYLNGRVIEMTSILGPFFHV-----SALPDHAIFKSQPDVGQQCFS 293
LVN + ++P S + GR + S LGPFF + P+H +F + ++
Sbjct: 252 NLLVNREDFLPTPSEKIQGREFGLMSFLGPFFSYGLESSARRPNHRVFVDCEEDARKYDG 311
Query: 294 EASTRRPADLLSSFTTIKTVMRGLYKDLGDVLLALLKNTDTRENVLEYLAEVINRNSSRA 353
+T + I+T++ L +L L + +R L ++A +I+ N R
Sbjct: 312 SVNTEQKL-YFQRMDPIRTMLHQL-------MLPLASDQGSRNKTLRWIATIISTNDIRT 363
Query: 354 HIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSSRLDLRSLTALH 413
+P N +VM Y+F S ++DL + +
Sbjct: 364 RSHYDPSDVLCDHYMTNFLSVM---------------------YMF-SEKIDLSKIIVDY 401
Query: 414 ASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGG 473
I+K K D SG + S A RP
Sbjct: 402 PFLPSSLINISKETRLKMD--------------------ESGAVAFASQFADRP------ 435
Query: 474 KSKYPFICECFFMT---ARVLNLGLLKAFSDF----KHLVQDISRAEDTLATLKATQGQT 526
+Y F CFF+T R++ L+ S++ K L I+ ++ L T+ +
Sbjct: 436 -DEYHFSTVCFFLTIAAQRLVIPPLMNQISEYSRHLKELKHKINALKEKLNTVSGFERAE 494
Query: 527 PSSQLNLEITRIEKEIELSSQEKLCYEAQI-----------LRDDFMNFII--------- 566
+LN E + +L S+ LC + Q D M FI+
Sbjct: 495 VEKKLNYET----EHWKLMSRHLLCVKTQAQDPALMASSMDFVDKQMKFILNLLCDNLDL 550
Query: 567 -------------MFMASPKYIRNPYLRSKMVEVLN---CWMPRRSGSSSATATLFEGH- 609
MF A P+Y L + + N M R + S LF +
Sbjct: 551 LGDDSQLPTEVSQMFCALPEYFLEDALDFYIFAISNGMKLLMERNADWISRLTVLFTQYH 610
Query: 610 -----------------------------QMSLEYLVRNLLKLYVDIEFTGSHTQFYDKF 640
+M+ E L+ ++K Y D E G FY+KF
Sbjct: 611 YIKSPFLVSKLVRVLSSIQPPLWFNVVRLRMAQENLLMCMIKFYSDFEDNGD---FYEKF 667
Query: 641 NIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILEL 700
N+R NI +LE + + ++ + +A+ E ++ F+N +IND+ + +DESL+ + +
Sbjct: 668 NVRGNIQYMLEKMEEDMFYKGKFMDMAR-ECGAEFIRFVNMVINDATWCIDESLSGLKSI 726
Query: 701 KVIEAEMSNTAEWERRPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPF 760
+E +M+N EW+ + R + ++ + ++ + A ++ +L + PF
Sbjct: 727 HDVEKKMANKVEWDNTDQEIRNQDLGVYEEAKRKVKGWLGTAKSNLKLLLSITVNSPEPF 786
Query: 761 LLPEMIERVASMLNYFLLQLVGPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQ 820
P + ER+A+MLN+ L QL+G + L +KDP Y + P++ + ++ IY+ L
Sbjct: 787 RTPVLGERLAAMLNHNLSQLIGSKASELKVKDPRSYGWEPREFVSLLISIYLKL----NM 842
Query: 821 NLFPAAISSDGRSYNEQLFSAAADVLWKIGEDG-RIIQEFIELGAKAKAAASEAMDAEAA 879
F I+ D R+Y+ + F A + + K G ++ F L K + E
Sbjct: 843 PAFVKYIAYDERTYSPEFFHNAIECMRKNSIVGFSQLESFEHLAEDVKKEYEAKAELEEE 902
Query: 880 LGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 939
D+P+EF DPI +M DPV LPS + +DR VI+RHLLS +PFNR+ L+ + L P+
Sbjct: 903 YDDVPEEFKDPIMDAIMVDPVKLPSGHV-MDRAVIERHLLSTPNNPFNRAPLSHNELSPD 961
Query: 940 TELKAKIEEFI 950
+ELKAKI+E+I
Sbjct: 962 SELKAKIQEWI 972
>sp|Q5ZHY5|CHIP_CHICK STIP1 homology and U box-containing protein 1 OS=Gallus gallus
GN=STUB1 PE=2 SV=1
Length = 314
Score = 60.1 bits (144), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 882 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLTADMLIPNT 940
DIPD I + LM++P I PS IT DR I+ HL DP RS LT D LIPN
Sbjct: 237 DIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNL 295
Query: 941 ELKAKIEEFIKSQG 954
+K I+ FI G
Sbjct: 296 AMKEVIDAFISENG 309
>sp|Q9UNE7|CHIP_HUMAN E3 ubiquitin-protein ligase CHIP OS=Homo sapiens GN=STUB1 PE=1 SV=2
Length = 303
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 874 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLT 932
+D + DIPD I + LM++P I PS IT DR I+ HL DP RS LT
Sbjct: 218 VDEKRKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLT 276
Query: 933 ADMLIPNTELKAKIEEFIKSQG 954
+ LIPN +K I+ FI G
Sbjct: 277 QEQLIPNLAMKEVIDAFISENG 298
>sp|Q9WUD1|CHIP_MOUSE STIP1 homology and U box-containing protein 1 OS=Mus musculus
GN=Stub1 PE=1 SV=1
Length = 304
Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 874 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLT 932
+D + DIPD I + LM++P I PS IT DR I+ HL DP RS LT
Sbjct: 219 VDEKRKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPLT 277
Query: 933 ADMLIPNTELKAKIEEFIKSQG 954
+ LIPN +K I+ FI G
Sbjct: 278 QEQLIPNLAMKEVIDAFISENG 299
>sp|Q925F4|RNF37_MOUSE RING finger protein 37 OS=Mus musculus GN=Ubox5 PE=2 SV=2
Length = 539
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 8/76 (10%)
Query: 882 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA------TDPFNRSHLTA-D 934
D+P+EFLDPI +M P++LPS ++ +D+ +++ LS+A +DPF T
Sbjct: 258 DVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNLSEAAWGRVPSDPFTGLAFTPQS 316
Query: 935 MLIPNTELKAKIEEFI 950
+P+ LKA+I+ F+
Sbjct: 317 QPLPHPSLKARIDRFL 332
>sp|O94941|RNF37_HUMAN RING finger protein 37 OS=Homo sapiens GN=UBOX5 PE=2 SV=1
Length = 541
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 8/76 (10%)
Query: 882 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT------DPFNRSHLTA-D 934
D+P+EFLDPI +M P++LPS ++ +D+ +++ S+AT DPF T
Sbjct: 258 DVPEEFLDPITLEIMPCPMLLPSGKV-IDQSTLEKCNRSEATWGRVPSDPFTGVAFTPHS 316
Query: 935 MLIPNTELKAKIEEFI 950
+P+ LKA+I+ F+
Sbjct: 317 QPLPHPSLKARIDHFL 332
>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica
GN=SPL11 PE=1 SV=2
Length = 694
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 941
IPDEF PI LMKDPVI+ + + T +R I++ + S T P + ++ L PN
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQ-TYERACIEKWIASGHHTCPTTQQKMSTSALTPNYV 331
Query: 942 LKAKIEEFIKSQGLK 956
L++ I ++ ++ G++
Sbjct: 332 LRSLISQWCETNGME 346
>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1
SV=2
Length = 694
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 941
IPDEF PI LMKDPVI+ + + T +R I++ + S T P + ++ L PN
Sbjct: 273 IPDEFRCPISLELMKDPVIVSTGQ-TYERACIEKWIASGHHTCPTTQQKMSTSALTPNYV 331
Query: 942 LKAKIEEFIKSQGLK 956
L++ I ++ ++ G++
Sbjct: 332 LRSLISQWCETNGME 346
>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica
GN=PUB12 PE=2 SV=1
Length = 611
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 941
IPDEF PI LM+DPVI+ S + T +R IQ+ L S T P + L+ L PN
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQ-TYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFV 286
Query: 942 LKAKIEEFIKSQGLK 956
LK+ I ++ ++ G++
Sbjct: 287 LKSLISQWCEANGIE 301
>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20
PE=2 SV=1
Length = 431
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 941
IP +F PI Y LMKDPVI+ S IT DR I++ S T P + LT+ IPN
Sbjct: 33 IPSQFQCPISYELMKDPVIIASG-ITYDRENIEKWFESGYQTCPVTNTVLTSLEQIPNHT 91
Query: 942 LKAKIEEFIKSQ---GLKR 957
++ I+ + S G++R
Sbjct: 92 IRRMIQGWCGSSLGGGIER 110
>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12
PE=2 SV=1
Length = 654
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query: 884 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTEL 942
P+EF PI LM DPVI+ S + T +R I++ L T P + LT+D++ PN L
Sbjct: 257 PEEFRCPISLELMTDPVIVSSGQ-TYERECIKKWLEGGHLTCPKTQETLTSDIMTPNYVL 315
Query: 943 KAKIEEFIKSQGLK 956
++ I ++ +S G++
Sbjct: 316 RSLIAQWCESNGIE 329
>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13
PE=1 SV=1
Length = 660
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 73/144 (50%), Gaps = 15/144 (10%)
Query: 827 ISSDGRSYNEQLFSAAADVLWKIGEDG---RIIQEFIE----------LGAKAKAAASEA 873
++ + + +E + S+ DV I E ++I++F++ +G +++ +
Sbjct: 187 LAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSNGQTS 246
Query: 874 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLT 932
A + IPD+F PI +M+DPVI+ S + T +R I++ + +T P + LT
Sbjct: 247 TAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQ-TYERTCIEKWIEGGHSTCPKTQQALT 305
Query: 933 ADMLIPNTELKAKIEEFIKSQGLK 956
+ L PN L++ I ++ ++ ++
Sbjct: 306 STTLTPNYVLRSLIAQWCEANDIE 329
>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22
PE=1 SV=1
Length = 435
Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 874 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATD--PFNRSHL 931
MD E +IP FL PI +MKDPVI+ S+ IT DR I++ L S + P + +
Sbjct: 1 MDQEI---EIPSFFLCPISLDIMKDPVIV-STGITYDRESIEKWLFSGKKNSCPVTKQVI 56
Query: 932 TADMLIPNTELKAKIEEFIK---SQGLKR 957
T L PN L+ I+ + S G++R
Sbjct: 57 TETDLTPNHTLRRLIQSWCTLNASYGIER 85
>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10
PE=2 SV=1
Length = 628
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 941
IP++FL PI LMKDP I+ + + T +R IQR + + + P + L L PN
Sbjct: 243 IPEDFLCPISLELMKDPAIVSTGQ-TYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYV 301
Query: 942 LKAKIEEFIKSQGLKRHGEGLN--IQSIKDTIQTTNGDM 978
L++ I ++ +++ G +N ++ + + +GDM
Sbjct: 302 LRSLISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDM 340
>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21
PE=2 SV=1
Length = 435
Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTE 941
IP EF PI LMKDPVI+ S+ IT DR I+ + S + T P + LT IPN
Sbjct: 31 IPPEFQCPISIDLMKDPVII-STGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIPNHT 89
Query: 942 LKAKIEEFIKSQG 954
++ I+ + +G
Sbjct: 90 IRKMIQGWCVEKG 102
>sp|Q6EUK7|PUB04_ORYSJ U-box domain-containing protein 4 OS=Oryza sativa subsp. japonica
GN=PUB4 PE=2 SV=1
Length = 728
Score = 42.7 bits (99), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRP-VIQRHLLSDATDPFNRSHLTADMLIPNTE 941
+P EF PI LM+DPV+ + + T DRP +IQ +T P + L L+PN
Sbjct: 297 VPKEFSCPISLDLMRDPVVASTGQ-TYDRPSIIQWIEEGHSTCPNSGQTLADHRLVPNRA 355
Query: 942 LKAKIEEFIKSQGLK 956
L++ I ++ GL+
Sbjct: 356 LRSLISQWCGVYGLQ 370
>sp|Q9SRT0|PUB9_ARATH U-box domain-containing protein 9 OS=Arabidopsis thaliana GN=PUB9
PE=1 SV=1
Length = 460
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 884 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTEL 942
P+EF P+ LM+DPV+L S + T D+ IQ+ L S + T P + L L PN +
Sbjct: 75 PEEFRCPLSNELMRDPVVLASGQ-TYDKLFIQKWLSSGNRTCPKTQQVLPHTALTPNLLI 133
Query: 943 KAKIEEFIKSQGLK 956
+ I ++ K GL+
Sbjct: 134 REMISKWCKKNGLE 147
>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23
PE=1 SV=1
Length = 411
Score = 42.0 bits (97), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 874 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATD--PFNRSHL 931
MD E +IP FL PI +MKDPVI+ S+ IT DR I++ L + + P + +
Sbjct: 6 MDEEI---EIPPFFLCPISLEIMKDPVIV-STGITYDRDSIEKWLFAGKKNSCPVTKQDI 61
Query: 932 TADMLIPNTELKAKIEEFIK---SQGLKR 957
T L PN L+ I+ + S G++R
Sbjct: 62 TDADLTPNHTLRRLIQSWCTLNASYGVER 90
>sp|Q8N9V3|WSDU1_HUMAN WD repeat, SAM and U-box domain-containing protein 1 OS=Homo
sapiens GN=WDSUB1 PE=1 SV=3
Length = 476
Score = 41.6 bits (96), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 849 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 908
+G +++++ EL K K+ +S IPDEF+ PI LMKDPVI S +
Sbjct: 380 LGLRSKVLRKIEELRTKVKSLSS----------GIPDEFICPITRELMKDPVI-ASDGYS 428
Query: 909 VDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953
++ ++ + T P L + +L PN LK I ++++
Sbjct: 429 YEKEAMENWISKKKRTSPMTNLVLPSAVLTPNRTLKMAINRWLETH 474
>sp|Q9D0I6|WSDU1_MOUSE WD repeat, SAM and U-box domain-containing protein 1 OS=Mus
musculus GN=Wdsub1 PE=2 SV=1
Length = 474
Score = 41.2 bits (95), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 849 IGEDGRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRIT 908
+G ++++ EL AK + +S IPDEF+ PI LMKDPVI S +
Sbjct: 378 LGLRSKVLRSIEELRAKMDSLSS----------GIPDEFICPITRELMKDPVI-ASDGYS 426
Query: 909 VDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953
+R ++ + T P L + +L PN LK I ++++
Sbjct: 427 YEREAMESWIHKKKRTSPMTNLALPSLVLTPNRTLKMAINRWLETH 472
>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17
PE=2 SV=1
Length = 729
Score = 41.2 bits (95), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 941
+P +F+ PI LM DPVI+ + + T DR I R + T P L ++PN
Sbjct: 305 VPKDFVCPISLDLMTDPVIISTGQ-TYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRA 363
Query: 942 LKAKIEEFIKSQGLKRHGE 960
LK I ++ + G+ E
Sbjct: 364 LKNLIVQWCTASGISYESE 382
>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3
PE=2 SV=2
Length = 760
Score = 40.8 bits (94), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 877 EAALG-DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTAD 934
E A G IP F P+ LM DPVI+ S + T DR I++ L + A P R LT
Sbjct: 231 EVAKGISIPPYFRCPLSTELMLDPVIVASGQ-TFDRTSIKKWLDNGLAVCPRTRQVLTHQ 289
Query: 935 MLIPNTELKAKIEEFIKS 952
LIPN +KA I ++++
Sbjct: 290 ELIPNYTVKAMIASWLEA 307
>sp|A0AUS0|WSDU1_DANRE WD repeat, SAM and U-box domain-containing protein 1 OS=Danio rerio
GN=wdsub1 PE=2 SV=1
Length = 487
Score = 40.4 bits (93), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 884 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTEL 942
PDEFL PI +MKDPVI + + +R I+ + + + T P L +L PN L
Sbjct: 418 PDEFLCPITREIMKDPVI-AADGYSYEREAIEAWISTKNRTSPMTNLPLQTTLLTPNRTL 476
Query: 943 KAKIEEFIKSQ 953
K I + SQ
Sbjct: 477 KMAIFRWSTSQ 487
>sp|O23225|PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5
PE=2 SV=3
Length = 718
Score = 40.4 bits (93), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATD--PFNRSHLTADMLIP 938
G +P++F + T+M DPVI+ S T +R IQ+ + D P ++ L L P
Sbjct: 217 GTLPEKFKCTLSRTVMYDPVIISSGN-TFERMQIQK-WFDEGNDSCPISKRKLDDFTLKP 274
Query: 939 NTELKAKIEEFIKSQGL 955
N ELK++I E+ GL
Sbjct: 275 NVELKSQISEWCAKNGL 291
>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25
PE=2 SV=1
Length = 421
Score = 40.4 bits (93), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQR--HLLSDATDPFNRSHLTADMLIPNT 940
IP F PI LM+DPV + + + T DR I+ + ++ T P R+ L+ LIPN
Sbjct: 14 IPYHFRCPISLELMQDPVTVCTGQ-TYDRASIESWVSIGNNTTCPVTRAPLSDFTLIPNH 72
Query: 941 ELKAKIEEFI---KSQGLKR 957
L+ I+E+ +S G++R
Sbjct: 73 TLRRLIQEWCVANRSNGVER 92
>sp|Q5FVN8|WSDU1_RAT WD repeat, SAM and U-box domain-containing protein 1 OS=Rattus
norvegicus GN=Wdsub1 PE=2 SV=1
Length = 476
Score = 40.4 bits (93), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTE 941
IPDEF+ PI LMKDPVI S + +R ++ + T P L + +L PN
Sbjct: 404 IPDEFICPITRELMKDPVI-ASDGYSYEREAMESWIHKKKRTSPMTNLALPSLVLTPNRT 462
Query: 942 LKAKIEEFIKSQ 953
LK I ++++
Sbjct: 463 LKMAINRWLETH 474
>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14
PE=1 SV=1
Length = 632
Score = 40.4 bits (93), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 941
IP+ F PI LMKDPVI+ + + T +R IQ+ L T P ++ L L PN
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQ-TYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYV 306
Query: 942 LKAKIEEFIKSQGLK 956
LK+ I + +S G++
Sbjct: 307 LKSLIALWCESNGIE 321
>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11
PE=2 SV=2
Length = 612
Score = 40.0 bits (92), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 941
IP +FL P+ LMKDPVI+ + + T +R IQR + + T P + L L PN
Sbjct: 241 IPVDFLCPVSLELMKDPVIVATGQ-TYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYV 299
Query: 942 LKAKIEEFIKSQGLKRHGEGLN 963
L++ I + +++ +N
Sbjct: 300 LRSLISRWCAEHNIEQPAGYIN 321
>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26
PE=2 SV=1
Length = 421
Score = 40.0 bits (92), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LSDATDPFNRSHLTADMLIPNTE 941
IP F PI LM DPV + + + T DR I + + + T P R L+ LIPN
Sbjct: 14 IPYHFRCPISLDLMSDPVTISTGQ-TYDRTSIDSWIAMGNTTCPVTRVALSDFTLIPNHT 72
Query: 942 LKAKIEEFI---KSQGLKR 957
L+ I+E+ +S G++R
Sbjct: 73 LRRLIQEWCVANRSNGVER 91
>sp|O81902|PUB8_ARATH U-box domain-containing protein 8 OS=Arabidopsis thaliana GN=PUB8
PE=2 SV=1
Length = 374
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 882 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLT-ADMLIPN 939
D+P++F PI +M DPVIL S T DR IQ+ + S + T P + L+ LIPN
Sbjct: 4 DLPNDFRCPISLEIMSDPVILQSGH-TFDRVSIQQWIDSGNRTCPITKLPLSETPYLIPN 62
Query: 940 TELKAKIEEF 949
L++ I F
Sbjct: 63 HALRSLILNF 72
>sp|Q5ZMC3|WSDU1_CHICK WD repeat, SAM and U-box domain-containing protein 1 OS=Gallus
gallus GN=WDSUB1 PE=2 SV=2
Length = 476
Score = 39.3 bits (90), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTE 941
+PDEFL PI LMKDPVI + + ++ ++ + ++ + P L + +L PN
Sbjct: 404 VPDEFLCPITRELMKDPVI-AADGYSYEKEAMENWISNNRRSSPMTNLPLPSLVLTPNRT 462
Query: 942 LKAKIEEFIKSQ 953
LK I ++++Q
Sbjct: 463 LKMAISRWLETQ 474
>sp|Q9SRS9|CHIP_ARATH E3 ubiquitin-protein ligase CHIP OS=Arabidopsis thaliana GN=CHIP
PE=1 SV=1
Length = 278
Score = 39.3 bits (90), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 882 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDAT-DPFNRSHLTADMLIPNT 940
++PD I + +DPVI PS +T +R I HL DP R + L+PN
Sbjct: 199 EVPDYLCCNITLEIFRDPVISPSG-VTYERAAILEHLKKVGKFDPITREKIDPANLVPNL 257
Query: 941 ELKAKIEEFIKSQ 953
+K + +++
Sbjct: 258 AIKEAVAAYLEKH 270
>sp|Q9SF15|PUB24_ARATH E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis thaliana GN=PUB24
PE=1 SV=1
Length = 456
Score = 37.4 bits (85), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 874 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTA 933
MD E +IP+ F+ PI +MKDPV S IT DR I + L + P + L
Sbjct: 1 MDQEEEEIEIPNYFICPISLEIMKDPVTTVSG-ITYDRQNIVKWLEKVPSCPVTKQPLPL 59
Query: 934 DM-LIPNTELKAKIEEF 949
D L PN L+ I+ +
Sbjct: 60 DSDLTPNHMLRRLIQHW 76
>sp|Q9STT1|PUB39_ARATH U-box domain-containing protein 39 OS=Arabidopsis thaliana GN=PUB39
PE=2 SV=1
Length = 509
Score = 36.2 bits (82), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 14/73 (19%)
Query: 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQ--RHL-----LSDATDPFNRSHLTA 933
G+ P EFL PI LM DPV++ S + T +R +Q R+L L D T P
Sbjct: 8 GETPTEFLCPITGFLMSDPVVVASGQ-TFERISVQVCRNLSFAPKLHDGTQP------DL 60
Query: 934 DMLIPNTELKAKI 946
+IPN +K+ I
Sbjct: 61 STVIPNLAMKSTI 73
>sp|P33107|KAD_MICLU Adenylate kinase OS=Micrococcus luteus GN=adk PE=3 SV=1
Length = 205
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|C5CC42|KAD_MICLC Adenylate kinase OS=Micrococcus luteus (strain ATCC 4698 / DSM
20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC 2665 /
VKM Ac-2230) GN=adk PE=3 SV=1
Length = 205
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 56/124 (45%), Gaps = 15/124 (12%)
Query: 352 RAHIQVEPLSCASSGMFVNLSAVM-LRLCDPFLDANLTKRDKI----DPKYVFYSSRLDL 406
R QVE L + +LSAV+ L + D L L KR +I D RLDL
Sbjct: 89 RTKGQVEALDAMLAEAGQSLSAVVELEVPDEELVERLLKRAEIEGRADDTQEVIEHRLDL 148
Query: 407 RSLTALHASSEEV-SEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAG 465
H +E V E++ +G A+ DG+ D +LLQ+ + S+ G SLP
Sbjct: 149 -----YHRETESVIQEYVERGIVARVDGTGQIDDVTERLLQAVYSVRSATG----SLPVI 199
Query: 466 RPAS 469
+P +
Sbjct: 200 QPGA 203
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana
GN=PUB50 PE=3 SV=1
Length = 765
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 865 KAKAAASEAMDAEAALGD---IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL-LS 920
K K EA ++ GD IP F+ PI +MK+P + + + + IQ L +
Sbjct: 668 KTKGGYEEATNSNMDEGDPNDIPSVFMCPILQEVMKNPHV-AADGFSYELEAIQEWLSMG 726
Query: 921 DATDPFNRSHLTADMLIPNTELKAKIEEF 949
T P L ML PN L++ I+++
Sbjct: 727 HDTSPMTNLRLDYQMLTPNHTLRSLIQDW 755
>sp|Q5ZRQ0|LUBX_LEGPH E3 ubiquitin-protein ligase LubX OS=Legionella pneumophila subsp.
pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
7513) GN=lubX PE=1 SV=1
Length = 246
Score = 35.4 bits (80), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 860 IELGAKAKAAASEAMDAEAALGDI-PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL 918
++ K+K A++A + + P PI +KDPVI P + ++ I + L
Sbjct: 13 FDIDHKSKYLREAALEANLSHPETTPTMLTCPIDSGFLKDPVITPEGFV-YNKSSILKWL 71
Query: 919 LSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953
+ DP +R LTA L P EL + F+++Q
Sbjct: 72 ETKKEDPQSRKPLTAKDLQPFPELLIIVNRFVETQ 106
>sp|Q5X159|LUBX_LEGPA E3 ubiquitin-protein ligase LubX OS=Legionella pneumophila (strain
Paris) GN=lubX PE=3 SV=1
Length = 240
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
Query: 860 IELGAKAKAAASEAMDAEAALGDI-PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHL 918
++ K+K A++A + + P PI +KDPVI P + ++ I + L
Sbjct: 7 FDIDHKSKYLREAALEANLSHPETTPTMLTCPIDSGFLKDPVITPEGFV-YNKSSILKWL 65
Query: 919 LSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953
+ DP +R LTA L P EL + F+++Q
Sbjct: 66 ETKKEDPQSRKPLTAKDLQPFPELLIIVNRFVETQ 100
>sp|O80742|PUB19_ARATH U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19
PE=2 SV=1
Length = 686
Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 885 DEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTELK 943
D+ PI +M DPV+L S T DR I + S + T P L + +L+ N +K
Sbjct: 280 DDLRCPISLEIMSDPVVLESGH-TYDRSSITKWFASGNITCPKTGKTLVSTVLVDNFSVK 338
Query: 944 AKIEEFIKSQGL 955
I+ + K G+
Sbjct: 339 QVIQSYSKQNGV 350
>sp|Q7M8Y8|SYFB_WOLSU Phenylalanine--tRNA ligase beta subunit OS=Wolinella succinogenes
(strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 /
FDC 602W) GN=pheT PE=3 SV=1
Length = 786
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 264 SILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRP 300
S++ PF H+SA+P I+K+ D+G + S S R P
Sbjct: 6 SLINPFVHLSAIPTQRIYKTLNDIGLEVDSFHSLRAP 42
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,176,145
Number of Sequences: 539616
Number of extensions: 14955125
Number of successful extensions: 74114
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 73709
Number of HSP's gapped (non-prelim): 370
length of query: 981
length of database: 191,569,459
effective HSP length: 127
effective length of query: 854
effective length of database: 123,038,227
effective search space: 105074645858
effective search space used: 105074645858
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)