Query 002017
Match_columns 981
No_of_seqs 285 out of 1197
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 08:51:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 100.0 2E-200 5E-205 1800.4 80.1 852 11-961 4-966 (968)
2 2kre_A Ubiquitin conjugation f 99.8 6.6E-22 2.3E-26 184.3 -0.2 95 863-958 6-100 (100)
3 1wgm_A Ubiquitin conjugation f 99.8 1.9E-20 6.4E-25 173.9 6.7 85 874-958 10-94 (98)
4 2kr4_A Ubiquitin conjugation f 99.8 1.3E-20 4.4E-25 170.3 5.2 82 875-957 3-84 (85)
5 2f42_A STIP1 homology and U-bo 99.7 1.5E-17 5E-22 169.9 9.8 94 853-955 81-175 (179)
6 2yu4_A E3 SUMO-protein ligase 99.6 9.1E-16 3.1E-20 141.0 5.3 72 882-954 3-84 (94)
7 2c2l_A CHIP, carboxy terminus 99.6 2E-15 6.7E-20 162.3 8.5 77 878-955 200-277 (281)
8 2bay_A PRE-mRNA splicing facto 99.5 5E-15 1.7E-19 125.8 3.0 55 886-941 3-58 (61)
9 1t1h_A Gspef-atpub14, armadill 99.5 2.8E-14 9.6E-19 125.7 6.6 74 881-955 3-77 (78)
10 3ztg_A E3 ubiquitin-protein li 99.2 3.9E-11 1.3E-15 108.8 8.2 79 879-958 6-88 (92)
11 3htk_C E3 SUMO-protein ligase 99.0 1.2E-10 4.2E-15 124.5 3.0 77 876-953 171-252 (267)
12 3fl2_A E3 ubiquitin-protein li 98.9 1.7E-10 5.9E-15 110.5 1.4 72 882-954 48-121 (124)
13 2y43_A E3 ubiquitin-protein li 98.9 8.4E-10 2.9E-14 101.5 3.2 75 881-956 17-92 (99)
14 1z6u_A NP95-like ring finger p 98.8 9.2E-10 3.1E-14 109.4 3.2 71 881-952 73-145 (150)
15 2ckl_A Polycomb group ring fin 98.7 1E-08 3.6E-13 95.7 4.1 70 881-951 10-84 (108)
16 2csy_A Zinc finger protein 183 98.6 1.2E-08 3.9E-13 90.5 3.3 66 881-948 10-75 (81)
17 3hct_A TNF receptor-associated 98.6 1.2E-08 4.1E-13 96.9 3.6 72 879-951 11-83 (118)
18 2ecw_A Tripartite motif-contai 98.6 7.5E-09 2.6E-13 91.5 1.3 66 879-945 12-83 (85)
19 1jm7_A BRCA1, breast cancer ty 98.6 9E-09 3.1E-13 96.2 1.7 68 884-952 19-89 (112)
20 2egp_A Tripartite motif-contai 98.6 2.5E-09 8.7E-14 93.7 -2.7 65 880-945 6-77 (79)
21 2ecv_A Tripartite motif-contai 98.6 8.5E-09 2.9E-13 91.1 0.6 66 879-945 12-83 (85)
22 1jm7_B BARD1, BRCA1-associated 98.6 1E-08 3.5E-13 97.3 1.0 69 883-954 19-88 (117)
23 2djb_A Polycomb group ring fin 98.5 7E-08 2.4E-12 83.6 5.7 61 879-940 8-69 (72)
24 4ayc_A E3 ubiquitin-protein li 98.5 5.6E-08 1.9E-12 94.9 4.9 66 883-951 50-115 (138)
25 2yur_A Retinoblastoma-binding 98.5 6.1E-08 2.1E-12 84.5 4.6 61 878-939 7-71 (74)
26 2ckl_B Ubiquitin ligase protei 98.5 3.9E-08 1.4E-12 98.6 3.5 71 881-952 49-122 (165)
27 3lrq_A E3 ubiquitin-protein li 98.5 6.5E-08 2.2E-12 89.4 4.0 71 882-953 18-90 (100)
28 2ecy_A TNF receptor-associated 98.4 1.4E-07 4.9E-12 80.1 4.9 57 879-936 8-65 (66)
29 3hcs_A TNF receptor-associated 98.4 1E-07 3.6E-12 95.9 4.2 71 879-950 11-82 (170)
30 3l11_A E3 ubiquitin-protein li 98.4 5.8E-08 2E-12 91.6 0.7 73 881-954 10-90 (115)
31 2ysl_A Tripartite motif-contai 98.3 3.5E-07 1.2E-11 78.8 4.9 58 878-936 12-72 (73)
32 1rmd_A RAG1; V(D)J recombinati 98.3 2.1E-07 7.3E-12 87.8 2.8 66 883-949 20-87 (116)
33 3knv_A TNF receptor-associated 98.2 1.6E-07 5.5E-12 92.4 0.2 67 881-948 26-102 (141)
34 3ng2_A RNF4, snurf, ring finge 98.2 1.1E-06 3.8E-11 75.2 4.1 57 882-939 6-69 (71)
35 1g25_A CDK-activating kinase a 98.1 2.1E-06 7.2E-11 72.6 5.0 54 885-939 2-61 (65)
36 2ct2_A Tripartite motif protei 98.1 2.9E-06 1E-10 75.5 5.5 56 879-935 8-70 (88)
37 2xeu_A Ring finger protein 4; 98.1 1.4E-06 4.7E-11 72.9 3.1 54 885-939 2-62 (64)
38 2d8t_A Dactylidin, ring finger 98.1 8E-07 2.7E-11 76.6 1.7 55 881-936 10-64 (71)
39 2ysj_A Tripartite motif-contai 98.0 5.8E-06 2E-10 69.3 5.0 49 878-927 12-63 (63)
40 2ea6_A Ring finger protein 4; 97.9 6.7E-06 2.3E-10 69.7 4.3 52 881-933 10-68 (69)
41 2ect_A Ring finger protein 126 97.9 8.1E-06 2.8E-10 71.3 4.2 59 881-940 10-71 (78)
42 4ap4_A E3 ubiquitin ligase RNF 97.7 1.3E-05 4.5E-10 76.2 3.4 56 883-939 4-66 (133)
43 2ecj_A Tripartite motif-contai 97.7 2.2E-05 7.6E-10 64.3 3.9 48 879-927 8-58 (58)
44 1chc_A Equine herpes virus-1 r 97.6 4.3E-05 1.5E-09 64.8 4.7 48 885-933 4-52 (68)
45 2ecn_A Ring finger protein 141 97.6 1.4E-05 4.7E-10 68.4 1.2 56 879-936 8-63 (70)
46 2ep4_A Ring finger protein 24; 97.5 0.00011 3.7E-09 63.5 6.0 54 879-933 8-64 (74)
47 2kiz_A E3 ubiquitin-protein li 97.5 9.5E-05 3.3E-09 62.9 5.0 53 881-934 9-64 (69)
48 2ecm_A Ring finger and CHY zin 97.5 7E-05 2.4E-09 60.7 3.8 47 885-932 4-54 (55)
49 2y1n_A E3 ubiquitin-protein li 97.5 5.8E-05 2E-09 85.4 4.2 53 884-937 330-383 (389)
50 1iym_A EL5; ring-H2 finger, ub 97.4 8.3E-05 2.8E-09 60.3 3.6 49 883-932 2-54 (55)
51 2l0b_A E3 ubiquitin-protein li 97.4 0.0001 3.6E-09 66.6 4.2 52 881-933 35-89 (91)
52 1x4j_A Ring finger protein 38; 97.3 0.00014 4.9E-09 63.0 3.7 51 883-934 20-73 (75)
53 1bor_A Transcription factor PM 97.2 8.7E-05 3E-09 61.2 1.8 48 884-935 4-51 (56)
54 1e4u_A Transcriptional repress 97.2 0.00031 1.1E-08 62.2 5.2 55 881-936 6-65 (78)
55 4ap4_A E3 ubiquitin ligase RNF 97.1 0.00015 5.2E-09 68.7 2.3 56 883-939 69-131 (133)
56 4ic3_A E3 ubiquitin-protein li 97.1 4.5E-05 1.5E-09 66.5 -1.9 45 884-933 22-67 (74)
57 1v87_A Deltex protein 2; ring- 97.0 0.00049 1.7E-08 64.3 4.3 50 883-933 22-94 (114)
58 2ecg_A Baculoviral IAP repeat- 96.8 0.00017 5.9E-09 62.8 -0.4 44 886-934 25-69 (75)
59 2ecl_A Ring-box protein 2; RNF 96.6 0.00078 2.7E-08 59.6 2.6 51 885-935 14-78 (81)
60 2vje_A E3 ubiquitin-protein li 96.4 0.0022 7.4E-08 54.3 3.7 47 885-932 7-56 (64)
61 3t6p_A Baculoviral IAP repeat- 96.2 0.0005 1.7E-08 77.0 -1.5 46 883-933 292-338 (345)
62 2vje_B MDM4 protein; proto-onc 96.1 0.0031 1.1E-07 53.2 3.2 46 886-932 7-55 (63)
63 2yho_A E3 ubiquitin-protein li 96.0 0.00072 2.5E-08 59.8 -1.3 44 885-933 17-61 (79)
64 3dpl_R Ring-box protein 1; ubi 95.8 0.0074 2.5E-07 56.4 4.5 47 886-933 37-101 (106)
65 1wim_A KIAA0161 protein; ring 95.6 0.011 3.8E-07 53.4 5.0 51 884-935 3-68 (94)
66 2kkx_A Uncharacterized protein 94.4 0.021 7.2E-07 52.4 3.1 59 880-938 21-84 (102)
67 2d8s_A Cellular modulator of i 94.4 0.031 1E-06 49.6 4.1 52 884-935 13-72 (80)
68 2ea5_A Cell growth regulator w 94.2 0.031 1.1E-06 47.9 3.6 46 883-933 12-58 (68)
69 4a0k_B E3 ubiquitin-protein li 93.7 0.011 3.9E-07 56.2 0.0 45 888-933 50-112 (117)
70 3i2d_A E3 SUMO-protein ligase 93.6 0.028 9.5E-07 63.1 2.8 64 885-948 248-315 (371)
71 4fo9_A E3 SUMO-protein ligase 93.4 0.084 2.9E-06 59.1 6.2 66 883-948 212-281 (360)
72 2ct0_A Non-SMC element 1 homol 86.8 0.71 2.4E-05 40.4 4.8 46 888-933 17-64 (74)
73 3k1l_B Fancl; UBC, ring, RWD, 84.2 0.19 6.3E-06 56.1 -0.3 47 887-933 309-373 (381)
74 1vyx_A ORF K3, K3RING; zinc-bi 65.7 6 0.0002 32.9 4.1 48 886-933 6-59 (60)
75 2f6m_A Suppressor protein STP2 39.2 62 0.0021 27.6 6.1 29 657-696 3-31 (65)
76 3nw0_A Non-structural maintena 35.7 30 0.001 36.5 4.5 48 887-934 181-230 (238)
77 2jun_A Midline-1; B-BOX, TRIM, 33.7 22 0.00074 31.8 2.7 33 885-918 2-38 (101)
78 2fd4_A Avirulence protein AVRP 33.7 49 0.0017 30.5 4.8 60 876-935 28-112 (122)
79 6rxn_A Rubredoxin; electron tr 25.0 22 0.00075 28.3 0.9 16 879-894 23-38 (46)
80 1e8j_A Rubredoxin; iron-sulfur 23.4 31 0.0011 28.0 1.5 15 880-894 30-44 (52)
81 2kn9_A Rubredoxin; metalloprot 21.6 34 0.0011 30.4 1.5 17 879-895 53-69 (81)
82 4rxn_A Rubredoxin; electron tr 21.3 28 0.00096 28.6 0.9 16 879-894 29-44 (54)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=100.00 E-value=1.5e-200 Score=1800.35 Aligned_cols=852 Identities=28% Similarity=0.472 Sum_probs=770.1
Q ss_pred HHHHHHHHHHhheeeccCCCCCCCCCeeechhhHHHHhhcCCccccChhhhhHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q 002017 11 EEIEDIILRKIFLVTLNEATTDADPRIAYLELTAAELLSEGKDMRLSRDLMERVLVDRLSGNFPAAEPPFLYLINCYRRA 90 (981)
Q Consensus 11 ~~~~~~~l~~if~vTl~~~~~~~~~~~~~L~~l~~el~~e~~~~~l~~d~ld~~l~erl~~~~~~~~~~~~YL~~c~~R~ 90 (981)
+.-.-.+|++||+||+||+. .+| .+||. +.|| ++|. .|+.|.+|+|||+||++.+ +.++||+||++||+||
T Consensus 4 ~~~~~~~l~~if~vtl~~~~-~~~--~~~~~--~~el-~~~~--~l~~d~ld~~l~e~ls~~~-~~~~p~~YL~~c~~R~ 74 (968)
T 3m62_A 4 EFRSMTAIEDILQITTDPSD-TRG--YSLLK--SEEV-PQGS--TLGVDFIDTLLLYQLTENE-KLDKPFEYLNDCFRRN 74 (968)
T ss_dssp HHHHHHHHHHHHTEESSCCS-SSS--CEECC--SCST-TCCS--CCCGGGHHHHHHHHHHTCS-SCCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHeeecCccc-cCC--ceEee--HHHh-ccCC--CCChhhHHHHHHHHHhcCC-CCCCcHHHHHHHHHHH
Confidence 33345679999999999984 234 45555 5566 3554 5999999999999999977 4479999999999999
Q ss_pred HHHHHhhcCCCCccchhHHHHHHHHHHHHHHhhhHHhhcCCcccCCCCCCcccccccCCCCCCCCchhHHHhhcCCCCCC
Q 002017 91 HDELKKIGNMKDKNLRSELEAVVKQAKKMIVSYCRIHLANPDFFGSNNDNNYEINNSNNKSSISPLLPFIFAEVGGGIDG 170 (981)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~vsy~~~~l~~Pd~F~~~~~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~ 170 (981)
.+++|+++++ ...+++.++++++++||||||++++++||||++++ ..+++++++.+.+
T Consensus 75 ~~~~r~~~~~---~~~~~~~~~l~~~~~L~~sy~~~~l~~Pdmf~~~~--------------~~~~~~~ll~~~~----- 132 (968)
T 3m62_A 75 QQQKRITKNK---PNAESLHSTFQEIDRLVIGYGVVALQIENFCMNGA--------------FINYITGIVSNVN----- 132 (968)
T ss_dssp HHHHHHHHTS---TTGGGGHHHHHHHHHHHHHHHHHHTTCTTSSSSCC--------------HHHHHHHHHHTGG-----
T ss_pred HHHHHhcccC---CCchHHHHHHHHHHHHHHHhHHHHhcCCccCCCCc--------------hHHHHHHHHhccc-----
Confidence 9999988542 23477789999999999999999999999998643 2357888887521
Q ss_pred CCCCCCCCCCCChHHHHHHHHhhcc-CChHHHHHHHHHHH----HHHhhccccccc--cchHHHHHHHhhCChhHHHhhh
Q 002017 171 FGNSTSSGSQCPPGFLKEFFEEADF-DTLDPILKGLYENL----RGSVLNVSALGN--FQQPLRALLYLVSFPVGVKSLV 243 (981)
Q Consensus 171 ~~~s~~~~~~~~~~Fl~eli~r~~~-d~l~~vf~~~~~~l----~~~~~~~s~~~~--~~~~l~~L~~L~~~k~ia~~l~ 243 (981)
...+||.++|+|+++ |++.++|+|+|..+ +..+.++++.++ |++++++|..|+++||||++|+
T Consensus 133 ----------~~~~FL~~~i~r~~~d~~l~~~~~~~f~~l~~~i~~~l~~~~l~~~~~~~~~l~~l~~lv~~kpia~~l~ 202 (968)
T 3m62_A 133 ----------SYTDFLSQIIQRAILEGTALDLLNAVFPTLLEYCNKHVSHFDLNESVIYNNVLTIFELFVTFKPIAEIFT 202 (968)
T ss_dssp ----------GTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSSSCCSTTCHHHHHHHHHHHHHHHTSHHHHHHGG
T ss_pred ----------chHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhhcCCCccchhHHHHHHHHHHHhCccHHHHHHH
Confidence 235999999999954 45888888888777 555667777765 9999999999999999999999
Q ss_pred cCCCCCCCccCCCchhhhhccccccccccCCCCCCccccCCChhhhhhcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 002017 244 NHQWWIPKSVYLNGRVIEMTSILGPFFHVSALPDHAIFKSQPDVGQQCFSEASTRRPADLLSSFTTIKTVMRGLYKDLGD 323 (981)
Q Consensus 244 ~~~~f~p~~~~~~G~~~E~~SlLGp~f~lS~l~~~~~f~~~p~v~~~~F~~~~~~~~~~i~~~~~slr~~l~~~~~~L~~ 323 (981)
++|+|+|+.. .+|++||+.|+|||||++||++ |+|+.+||+++.++++++++++++++|++++.++++||+
T Consensus 203 ~~~~f~P~~~-~~g~~~E~~tlLGp~f~lS~l~--------~~v~~~~f~~~~~~~~~~~~~~~~sl~~~~~~~~~~L~~ 273 (968)
T 3m62_A 203 KIDGFFADYS-CKPQDFERKTILGPILSLSPIE--------AAVAIRNYGDNLLRSKQQTAMIHESLQAEHKVVIDRLFF 273 (968)
T ss_dssp GSTTSSCCTT-CCGGGHHHHSTTHHHHTCCTTS--------HHHHHHHTTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccCCCCC-ccHHHHHHHHhHHhhhhcccCC--------cchHhhcCCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999843 5899999999999999999994 688999999999999999999999999999999999999
Q ss_pred HHHHHhc-CchhHHHHHHHHHHHHHhchhhccccCCCCccCchhhhHHHHHHHHHhhhhhccCCCCCcCcccccccccCC
Q 002017 324 VLLALLK-NTDTRENVLEYLAEVINRNSSRAHIQVEPLSCASSGMFVNLSAVMLRLCDPFLDANLTKRDKIDPKYVFYSS 402 (981)
Q Consensus 324 I~~~Llr-~~~sRe~vL~w~a~~l~~N~~R~~~~~d~~~~aSDGFmlNl~~VLlrLc~PF~d~~~~K~dKID~~Y~~~~~ 402 (981)
|+++||| |+++|++||+|||+||++||+|++||+||.++||||||+|+++||+|||+||||++++|+||||++||++++
T Consensus 274 I~~~llr~s~etR~~~L~w~a~~ln~N~~R~~~q~d~~~vaSDgFm~Nl~~VL~rLc~PF~d~~~~KidkID~~Y~~~~~ 353 (968)
T 3m62_A 274 IVDKLVRGSLNSRTDMISYFAHIANKNHLRRADHPPFKELSSNGFMSNITLLLVRFSQPFLDISYKKIDKIDANYFNNPS 353 (968)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTCGGGGSSSCCGGGSCCHHHHHHHHHHHHHHHGGGGSTTCTTGGGSCTTTTTSCC
T ss_pred HHHHHHhCCcchHHHHHHHHHHHHHhCcHHHhcCCCccccCccHHHHHHHHHHHHhhhhhccccccchheeChhhcCCCC
Confidence 9999999 899999999999999999999999999999999999999999999999999999999999999999999765
Q ss_pred -ccCCCCcccccCChHHHHHHHhcCCCCCCCCCCCCCcchhhhhhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCchh
Q 002017 403 -RLDLRSLTALHASSEEVSEWINKGNPAKADGSKHFSDGENQLLQSQEATSSSGGASEPSLPAGRPASIGGGKSKYPFIC 481 (981)
Q Consensus 403 -rvdi~~eTrl~a~~~e~~~~~~~~~p~~~~~~~~~~~~e~~~l~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~nFIt 481 (981)
|+|+++|||||+|++++++||++.+ ....+++||||
T Consensus 354 ~ridi~~ETrlna~~~e~~~~~~~~~-------------------------------------------~~~~~~~nFIt 390 (968)
T 3m62_A 354 LFIDLSGETRLNSDFKEADAFYDKNR-------------------------------------------KTADSKPNFIS 390 (968)
T ss_dssp SSSCCTTCCBSSCCHHHHHHHHHHHC-------------------------------------------CCSSCCCCHHH
T ss_pred CCCCCChhhhhcCCHHHHHHHHhhcc-------------------------------------------cCCCCCCCchH
Confidence 5999999999999999999997532 01446899999
Q ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCh----HHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 002017 482 ECFFMTARVLNLGLLKAFSDFKHLVQDISRAEDTLATLKATQGQTPSS----QLNLEITRIEKEIELSSQEKLCYEAQIL 557 (981)
Q Consensus 482 ecFFLT~~~lhlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~l~~l~~~~~~~~~~~L 557 (981)
||||||+++||||+++++.+|+++.++|++++++++++++.+. .+| .+++++++++++++++.+.++|+++.++
T Consensus 391 ecFFLT~~a~hlG~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~--~~p~~~~~~~~~l~~~~~~l~~~~~~k~~~~~~l~ 468 (968)
T 3m62_A 391 DCFFLTLTYLHYGLGGTLSFEEKMGSEIKALKEEIEKVKKIAA--NHDVFARFITAQLSKMEKALKTTESLRFALQGFFA 468 (968)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999987632 233 2467899999999999999999887332
Q ss_pred HH------------------------------------------------------------------------------
Q 002017 558 RD------------------------------------------------------------------------------ 559 (981)
Q Consensus 558 ~~------------------------------------------------------------------------------ 559 (981)
++
T Consensus 469 d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iEdi~d~~~F~ 548 (968)
T 3m62_A 469 HRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVEGPVNYSLYI 548 (968)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCccCCCCccccccccccchhcccccCChHHhhCcHHHHHhHHHHHHHH
Confidence 21
Q ss_pred ---------------HHHHHHHHHhcCCCcccCchhhhhHHHHhhh-hcCCCCCCcchhHhhhhcccchHHHHHHHHHHH
Q 002017 560 ---------------DFMNFIIMFMASPKYIRNPYLRSKMVEVLNC-WMPRRSGSSSATATLFEGHQMSLEYLVRNLLKL 623 (981)
Q Consensus 560 ---------------~~~~f~i~~l~s~~~ikNP~LraklvevL~~-~~p~~~g~~~~~~~lf~~~~l~~~~L~~aLm~f 623 (981)
+|++|||+||+||+|||||||||||||+|+. ++|..++.+|.+.++|++||++++||+||||+|
T Consensus 549 ~r~~p~~l~~~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~la~~~L~~aLm~f 628 (968)
T 3m62_A 549 SKYQTSPIFRNPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDELVNKNLLYALLDF 628 (968)
T ss_dssp TTCTTCTTTTCTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHcCCCccccccchhHHHHHHHHHhCCccccCCHHHHHHHHHHHHhcccccccCCccHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999985 789877777888999999999999999999999
Q ss_pred hhhheecCCCccchhhhhhhHHHHHHHHHHc-CChhHHHHHHHHHHHhcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 002017 624 YVDIEFTGSHTQFYDKFNIRHNIAELLEYLW-QVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKV 702 (981)
Q Consensus 624 YidvE~TG~~~qFYdKFn~Ry~I~~Ilk~LW-~~~~~r~~l~~~a~~~~~~~FvrFvn~liND~t~lLDE~L~~L~~I~~ 702 (981)
|||||+||+|+|||||||+||+|++||++|| ++|.||++|.++++++ +++|+|||||||||+||||||+|++|++||+
T Consensus 629 YvdvE~TG~~~qFYdKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~-~~~FvrFvNlLiND~tyLLDEsL~~L~~I~~ 707 (968)
T 3m62_A 629 YVIVEKTGSSSQFYDKFNSRYSISIILEELYYKIPSYKNQLIWQSQNN-ADFFVRFVARMLNDLTFLLDEGLSNLAEVHN 707 (968)
T ss_dssp HHHGGGCCSCCSSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccCCcchHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999999999874 7899999999999999999999999999999
Q ss_pred HHHHhcchhhhcC-CCHHHHHHHHHHHHHhhhhhhhhhhchHHHHHHHHHhHhhhcCCCCchHHHHHHHHHHHHHHHhhc
Q 002017 703 IEAEMSNTAEWER-RPAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQIVAPFLLPEMIERVASMLNYFLLQLV 781 (981)
Q Consensus 703 ~q~~~~d~~~w~~-l~~eer~e~~~~l~~~e~~~rs~~~L~~etv~~l~~~T~~i~~~F~~peiv~RlA~MLny~L~~Lv 781 (981)
+|.++++.+.|.. ..+|+|+++++.++++||+||||++||++||+||+++|+++|++|++||||+|||+||||||++||
T Consensus 708 ~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~peiv~RlA~MLnynL~~Lv 787 (968)
T 3m62_A 708 IQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTPEIVYRLASMLNYNLESLV 787 (968)
T ss_dssp HHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccCCccchhHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHhchhhccHHHHHHHHHHHHHHHHHhc
Confidence 9999998877764 335678899999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccCCCcccCCChHHHHHHHHHHHHhhccCCCCchhhHhhhhcCCCCcHHHHHHHHHHHHhh-cC-ChHHHHHH
Q 002017 782 GPQRKSLTLKDPEKYEFRPKQLLKQIVCIYVHLARGDTQNLFPAAISSDGRSYNEQLFSAAADVLWKI-GE-DGRIIQEF 859 (981)
Q Consensus 782 Gpk~~~LkVknpekY~F~Pk~lL~~i~~iYlnL~~~~~~~~F~~ava~D~Rsy~~~lf~~a~~il~~~-~~-~~~~i~~~ 859 (981)
||||++||||||++|+|+||+||.+||+||+||++ +++|++|||+|||||++++|++|++||++. |+ +++.+++|
T Consensus 788 GPk~~~LKVknpekY~F~Pk~lL~~i~~IYlnL~~---~~~F~~aVa~DgRSy~~elF~~a~~il~~~~~l~~~~~i~~~ 864 (968)
T 3m62_A 788 GPKCGELKVKDPQSYSFNPKDLLKALTTVYINLSE---QSEFISAVAKDERSFNRNLFVRAVDILGRKTGLASPEFIEKL 864 (968)
T ss_dssp SHHHHTCCCSCGGGGTCCHHHHHHHHHHHHHHTTT---CHHHHHHHHHCTTTCCHHHHHHHHHHHTTSTTSSCHHHHHHH
T ss_pred CccccccccCCHhhcCCCHHHHHHHHHHHHhhccC---ChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 99999999999999999999999999999999995 347999999999999999999999999765 67 99999999
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q 002017 860 IELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 939 (981)
Q Consensus 860 ~~l~~~v~~~~~~~~~~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn 939 (981)
.+|++++++.+++.+++|++++++|++|+||||.+||+|||++|+||+||||++|++||.++++||+||+||+.++|+||
T Consensus 865 ~~l~~~~~~~~~~~~~~e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN 944 (968)
T 3m62_A 865 LNFANKAEEQRKADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN 944 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred HHHHHHHHHHHHHHHhhhccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence 99999999999888888999999999999999999999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCcCCcc
Q 002017 940 TELKAKIEEFIKSQGLKRHGEG 961 (981)
Q Consensus 940 ~~Lk~~I~~~~~~~~~~~~~~~ 961 (981)
.+||++|++|+.+++.++..+.
T Consensus 945 ~~Lk~~I~~w~~~~~~~~~~~~ 966 (968)
T 3m62_A 945 EELRQKILCFKKQKKEEAKHKA 966 (968)
T ss_dssp HHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHhhhcccc
Confidence 9999999999999988776443
No 2
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.82 E-value=6.6e-22 Score=184.25 Aligned_cols=95 Identities=44% Similarity=0.700 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhHhhhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHH
Q 002017 863 GAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTEL 942 (981)
Q Consensus 863 ~~~v~~~~~~~~~~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~L 942 (981)
+++++++.+..+++|.+..++|++|+||||.++|+|||++|+| |+|||++|.+|+.++++||+||++|+.++|+||..|
T Consensus 6 ~~~~~~~~~~~~~~e~~~~~~p~~~~CpI~~~~m~dPV~~~cG-htf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn~~L 84 (100)
T 2kre_A 6 AEKVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSG-TIMDRSIILRHLLNSPTDPFNRQTLTESMLEPVPEL 84 (100)
T ss_dssp SSCCCCSCSCSSCSSCSCSSCSTTTBCTTTCSBCSSEEEETTT-EEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEECHHH
T ss_pred HHHHHHHHHhhcchhhhhccCcHhhCCcCccCcccCCeECCCC-CEEchHHHHHHHHcCCCCCCCCCCCChhhceECHHH
Confidence 3344444444445567889999999999999999999999988 999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcC
Q 002017 943 KAKIEEFIKSQGLKRH 958 (981)
Q Consensus 943 k~~I~~~~~~~~~~~~ 958 (981)
|+.|++|+.+++.+++
T Consensus 85 k~~I~~~~~~~~~~~~ 100 (100)
T 2kre_A 85 KEQIQAWMREKQNSDH 100 (100)
T ss_dssp HHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHhhhccC
Confidence 9999999999887653
No 3
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.81 E-value=1.9e-20 Score=173.86 Aligned_cols=85 Identities=58% Similarity=0.838 Sum_probs=79.1
Q ss_pred HhHhhhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHc
Q 002017 874 MDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953 (981)
Q Consensus 874 ~~~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~ 953 (981)
+++++.+.++|++|+|||+.++|+|||++|+|||+|||++|++|+.++.+||+||++|+.++|+||..||+.|++|+..+
T Consensus 10 ~~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~ 89 (98)
T 1wgm_A 10 QQEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER 89 (98)
T ss_dssp CSCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred ccchhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence 34567788999999999999999999999999999999999999999899999999999999999999999999999998
Q ss_pred CCCcC
Q 002017 954 GLKRH 958 (981)
Q Consensus 954 ~~~~~ 958 (981)
+.++.
T Consensus 90 ~~~~~ 94 (98)
T 1wgm_A 90 KQQSG 94 (98)
T ss_dssp TTCSC
T ss_pred chhhc
Confidence 76654
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.80 E-value=1.3e-20 Score=170.35 Aligned_cols=82 Identities=49% Similarity=0.769 Sum_probs=77.1
Q ss_pred hHhhhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcC
Q 002017 875 DAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQG 954 (981)
Q Consensus 875 ~~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~~ 954 (981)
++|+++.++|++|+|||+.++|+|||++|+| |+|||++|++|+.++++||+||++++.++|+||..||+.|++|+.+++
T Consensus 3 ~~e~~~~~~p~~~~CpI~~~~m~dPV~~~cG-htf~r~~I~~~l~~~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 3 SAEIDYSDAPDEFRDPLMDTLMTDPVRLPSG-TVMDRSIILRHLLNSPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp CCCCCCTTCCTTTBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred hhhhhhhcCchheECcccCchhcCCeECCCC-CEECHHHHHHHHhcCCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence 4577889999999999999999999999987 999999999999998999999999999999999999999999999887
Q ss_pred CCc
Q 002017 955 LKR 957 (981)
Q Consensus 955 ~~~ 957 (981)
.+|
T Consensus 82 ~~~ 84 (85)
T 2kr4_A 82 SSD 84 (85)
T ss_dssp HTC
T ss_pred hcc
Confidence 655
No 5
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.71 E-value=1.5e-17 Score=169.90 Aligned_cols=94 Identities=37% Similarity=0.580 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC-CCCCCCCCC
Q 002017 853 GRIIQEFIELGAKAKAAASEAMDAEAALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHL 931 (981)
Q Consensus 853 ~~~i~~~~~l~~~v~~~~~~~~~~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL 931 (981)
.+.++++..+..++.+. ....++|++|+||||.++|+|||++||| |+|||++|.+|+.+++ +||+||+||
T Consensus 81 ~~~i~~~~~l~~~~~~~--------~~~~~ip~~f~CPI~~elm~DPV~~~~G-htfer~~I~~~l~~~~~tcP~t~~~l 151 (179)
T 2f42_A 81 DKYLMDMDELFSQVDEK--------RKKREIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFDPVTRSPL 151 (179)
T ss_dssp HHHHHHHHHHHHHHHHG--------GGCCCCCGGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHTCSBCTTTCCBC
T ss_pred HHHHHHHHHHHHHHhhh--------ccccCCcHhhcccCccccCCCCeECCCC-CEECHHHHHHHHHhCCCCCCCCcCCC
Confidence 44566666666555321 3357899999999999999999999988 9999999999999864 799999999
Q ss_pred CCCCccccHHHHHHHHHHHHHcCC
Q 002017 932 TADMLIPNTELKAKIEEFIKSQGL 955 (981)
Q Consensus 932 ~~~~l~pn~~Lk~~I~~~~~~~~~ 955 (981)
+.++|+||..||+.|++|+..++.
T Consensus 152 ~~~~L~pN~~Lk~~Ie~~~~~~~~ 175 (179)
T 2f42_A 152 TQDQLIPNLAMKEVIDAFIQENGW 175 (179)
T ss_dssp CGGGCEECHHHHHHHHHHHHHCTT
T ss_pred ChhhCcchHHHHHHHHHHHHHCCC
Confidence 999999999999999999988764
No 6
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=9.1e-16 Score=141.00 Aligned_cols=72 Identities=26% Similarity=0.239 Sum_probs=65.4
Q ss_pred CCCCCCCCCCccccccCccccC-CCCeeecHHHHHHHHhcC------CCCCCCCCC---CCCCCccccHHHHHHHHHHHH
Q 002017 882 DIPDEFLDPIQYTLMKDPVILP-SSRITVDRPVIQRHLLSD------ATDPFNRSH---LTADMLIPNTELKAKIEEFIK 951 (981)
Q Consensus 882 ~iP~ef~cPI~~~lM~DPVilp-~g~~t~dR~~I~~~L~~~------~~dP~tr~p---L~~~~l~pn~~Lk~~I~~~~~ 951 (981)
..+++|.|||+.++|+|||++| +| |+|||++|.+|+.++ .+||+||.+ ++.++|+||..|++.|++|+.
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cG-h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCG-HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSC-CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CCCcEeECcCcCchhcCCEEcCCCC-CeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 4688999999999999999997 77 999999999999874 499997766 999999999999999999997
Q ss_pred HcC
Q 002017 952 SQG 954 (981)
Q Consensus 952 ~~~ 954 (981)
.+.
T Consensus 82 ~~~ 84 (94)
T 2yu4_A 82 KRH 84 (94)
T ss_dssp TCC
T ss_pred Hhc
Confidence 765
No 7
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.57 E-value=2e-15 Score=162.29 Aligned_cols=77 Identities=42% Similarity=0.649 Sum_probs=71.1
Q ss_pred hhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC-CCCCCCCCCCCCCccccHHHHHHHHHHHHHcCC
Q 002017 878 AALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFIKSQGL 955 (981)
Q Consensus 878 ~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~~~ 955 (981)
....++|++|+||||.++|+|||++||| |||||++|.+|+..++ +||+||+|++..+|+||..||+.|++|+.+++.
T Consensus 200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~g-h~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 277 (281)
T 2c2l_A 200 RKKRDIPDYLCGKISFELMREPCITPSG-ITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW 277 (281)
T ss_dssp TSCCCCCSTTBCTTTCSBCSSEEECSSC-CEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred ccCCCCCcccCCcCcCCHhcCCeECCCC-CEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCC
Confidence 4457899999999999999999999988 9999999999999865 699999999999999999999999999987754
No 8
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.50 E-value=5e-15 Score=125.83 Aligned_cols=55 Identities=15% Similarity=0.307 Sum_probs=51.1
Q ss_pred CCCCCCccccccCcccc-CCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHH
Q 002017 886 EFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTE 941 (981)
Q Consensus 886 ef~cPI~~~lM~DPVil-p~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~ 941 (981)
.|+||||.++|+|||++ ++| ++|||++|++||.++++||+||+||+.++|+|+..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG-~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSR-TIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTT-EEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCC-cEEcHHHHHHHHHhCCCCcCCcCCCChhhcEECcc
Confidence 58999999999999999 666 99999999999999999999999999999999853
No 9
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.48 E-value=2.8e-14 Score=125.67 Aligned_cols=74 Identities=36% Similarity=0.508 Sum_probs=69.7
Q ss_pred CCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc-CCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcCC
Q 002017 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGL 955 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~~~ 955 (981)
.++|++|.|||+.++|+|||++|+| |+|+|.+|.+|+.+ ..+||.+|++++.++++||..|++.|++|+++++.
T Consensus 3 ~~~~~~~~C~IC~~~~~~Pv~~~Cg-H~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~ 77 (78)
T 1t1h_A 3 PEFPEYFRCPISLELMKDPVIVSTG-QTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGI 77 (78)
T ss_dssp CCCSSSSSCTTTSCCCSSEEEETTT-EEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCC
T ss_pred cCCcccCCCCCccccccCCEEcCCC-CeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCC
Confidence 4689999999999999999999988 99999999999997 57999999999999999999999999999998763
No 10
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.18 E-value=3.9e-11 Score=108.78 Aligned_cols=79 Identities=28% Similarity=0.393 Sum_probs=70.6
Q ss_pred hcCCCCCCCCCCCccccccCccccC-CCCeeecHHHHHHHHhcC--CCCCCCCCCC-CCCCccccHHHHHHHHHHHHHcC
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILP-SSRITVDRPVIQRHLLSD--ATDPFNRSHL-TADMLIPNTELKAKIEEFIKSQG 954 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp-~g~~t~dR~~I~~~L~~~--~~dP~tr~pL-~~~~l~pn~~Lk~~I~~~~~~~~ 954 (981)
..++++++|.|||+.++|.|||++| +| |+|++.+|.+|+... .+||.+|+++ ..+++.||..|++.|+.|+..+.
T Consensus 6 ~~~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 6 EDDPIPDELLCLICKDIMTDAVVIPCCG-NSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp SCCCCCTTTEETTTTEECSSCEECTTTC-CEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred ccccCCcCCCCCCCChhhcCceECCCCC-CHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence 3467899999999999999999999 66 999999999999865 4999999998 57899999999999999999876
Q ss_pred CCcC
Q 002017 955 LKRH 958 (981)
Q Consensus 955 ~~~~ 958 (981)
..+.
T Consensus 85 ~~~~ 88 (92)
T 3ztg_A 85 YTKR 88 (92)
T ss_dssp CCCC
T ss_pred HHhh
Confidence 6544
No 11
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.2e-10 Score=124.51 Aligned_cols=77 Identities=14% Similarity=0.106 Sum_probs=68.2
Q ss_pred HhhhcCCCCCCCCCCCccccccCcccc-CCCCeeecHHHHHHHHhcC--CCCCC--CCCCCCCCCccccHHHHHHHHHHH
Q 002017 876 AEAALGDIPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSD--ATDPF--NRSHLTADMLIPNTELKAKIEEFI 950 (981)
Q Consensus 876 ~e~~~~~iP~ef~cPI~~~lM~DPVil-p~g~~t~dR~~I~~~L~~~--~~dP~--tr~pL~~~~l~pn~~Lk~~I~~~~ 950 (981)
+|...+....+|.||||..+|+|||++ .|| |+|||++|.+|+... .+||. ||++++.++|+||..|++.|+.|.
T Consensus 171 DDI~v~~~~~el~CPIcl~~f~DPVts~~CG-HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k 249 (267)
T 3htk_C 171 DDLQIEGGKIELTCPITCKPYEAPLISRKCN-HVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAK 249 (267)
T ss_dssp SCCCCCSSBCCSBCTTTSSBCSSEEEESSSC-CEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHH
T ss_pred ccceecCCceeeECcCccCcccCCeeeCCCC-CcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHH
Confidence 344456788999999999999999986 777 999999999999875 38999 889999999999999999999998
Q ss_pred HHc
Q 002017 951 KSQ 953 (981)
Q Consensus 951 ~~~ 953 (981)
...
T Consensus 250 ~r~ 252 (267)
T 3htk_C 250 MKE 252 (267)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.92 E-value=1.7e-10 Score=110.47 Aligned_cols=72 Identities=15% Similarity=0.204 Sum_probs=64.8
Q ss_pred CCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC-CCCCCCCCCCC-CCccccHHHHHHHHHHHHHcC
Q 002017 882 DIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTA-DMLIPNTELKAKIEEFIKSQG 954 (981)
Q Consensus 882 ~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL~~-~~l~pn~~Lk~~I~~~~~~~~ 954 (981)
++++++.|||+.++|.|||++|+| |+|++.+|.+|+.... +||.+|++++. .++.+|..|++.|+.|.....
T Consensus 48 ~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~~~ 121 (124)
T 3fl2_A 48 KVEETFQCICCQELVFRPITTVCQ-HNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPGYG 121 (124)
T ss_dssp HHHHHTBCTTTSSBCSSEEECTTS-CEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTTTT
T ss_pred hCccCCCCCcCChHHcCcEEeeCC-CcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccccc
Confidence 456678999999999999999988 9999999999998665 99999999998 889999999999999975543
No 13
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.85 E-value=8.4e-10 Score=101.49 Aligned_cols=75 Identities=16% Similarity=0.078 Sum_probs=68.0
Q ss_pred CCCCCCCCCCCccccccCcccc-CCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcCCC
Q 002017 881 GDIPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQGLK 956 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVil-p~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~~~~ 956 (981)
.++++++.|||+.+.|.|||++ |+| |+|++.+|.+|+....+||.+|.+++..++.+|..|++.|+.|...+...
T Consensus 17 ~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 92 (99)
T 2y43_A 17 KTIDDLLRCGICFEYFNIAMIIPQCS-HNYCSLCIRKFLSYKTQCPTCCVTVTEPDLKNNRILDELVKSLNFARNHL 92 (99)
T ss_dssp HHHHHHTBCTTTCSBCSSEEECTTTC-CEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHTC
T ss_pred HhCCCCCCcccCChhhCCcCEECCCC-CHhhHHHHHHHHHCCCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999998 777 99999999999998899999999999999999999999999999876543
No 14
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.84 E-value=9.2e-10 Score=109.45 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC-CCCCCCCCCCCC-CccccHHHHHHHHHHHHH
Q 002017 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTAD-MLIPNTELKAKIEEFIKS 952 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL~~~-~l~pn~~Lk~~I~~~~~~ 952 (981)
.++++++.|||+.++|.|||++||| |+|++.+|.+|+.... +||.||.+++.. .+.+|..|++.|+.|...
T Consensus 73 ~~l~~~~~C~IC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~ 145 (150)
T 1z6u_A 73 KKLEQSFMCVCCQELVYQPVTTECF-HNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG 145 (150)
T ss_dssp HHHHHHTBCTTTSSBCSSEEECTTS-CEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred HhCccCCEeecCChhhcCCEEcCCC-CchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence 4567789999999999999999998 9999999999999865 899999999988 899999999999999743
No 15
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.66 E-value=1e-08 Score=95.73 Aligned_cols=70 Identities=9% Similarity=0.107 Sum_probs=64.1
Q ss_pred CCCCCCCCCCCccccccCcccc-CCCCeeecHHHHHHHHhcCCCCCCCCCCCCCC----CccccHHHHHHHHHHHH
Q 002017 881 GDIPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSDATDPFNRSHLTAD----MLIPNTELKAKIEEFIK 951 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVil-p~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~----~l~pn~~Lk~~I~~~~~ 951 (981)
.++++++.|||+.++|.|||++ |+| |+|++.+|.+|+....+||.+|.++... .+.+|..|++.|+.|..
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 10 TELNPHLMCVLCGGYFIDATTIIECL-HSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HHHGGGTBCTTTSSBCSSEEEETTTC-CEEEHHHHHHHHTSCSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred hccCCcCCCccCChHHhCcCEeCCCC-ChhhHHHHHHHHHhCCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 3467889999999999999998 887 9999999999999989999999999976 78999999999998864
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=1.2e-08 Score=90.45 Aligned_cols=66 Identities=15% Similarity=0.117 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHH
Q 002017 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEE 948 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~ 948 (981)
.+..+++.|||+.+.+.|||++|+| |+|.+.+|.+|+....+||++|+++. ..+.+|.+|.+++++
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~-~~~~~~~~l~~~~~~ 75 (81)
T 2csy_A 10 EEEEIPFRCFICRQAFQNPVVTKCR-HYFCESCALEHFRATPRCYICDQPTG-GIFNPAKELMAKLQK 75 (81)
T ss_dssp SCCCCCSBCSSSCSBCCSEEECTTS-CEEEHHHHHHHHHHCSBCSSSCCBCC-SCCEECHHHHHHHSS
T ss_pred ccCCCCCCCcCCCchhcCeeEccCC-CHhHHHHHHHHHHCCCcCCCcCcccc-ccCCcHHHHHHHHHh
Confidence 4567789999999999999999998 99999999999998899999999998 788899777666543
No 17
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.63 E-value=1.2e-08 Score=96.95 Aligned_cols=72 Identities=15% Similarity=0.230 Sum_probs=66.1
Q ss_pred hcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC-CCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFIK 951 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~ 951 (981)
....+++++.|||+.++|.+||++|+| |+|++.+|.+|+...+ +||.+|.+++.+++.|+..+++.|.++.-
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 11 FDPPLESKYECPICLMALREAVQTPCG-HRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp BSSCCCGGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred hccCCCCCCCCCcCChhhcCeEECCcC-ChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcccee
Confidence 346788999999999999999999988 9999999999999876 99999999999999999999999988653
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.60 E-value=7.5e-09 Score=91.48 Aligned_cols=66 Identities=26% Similarity=0.270 Sum_probs=59.4
Q ss_pred hcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc------CCCCCCCCCCCCCCCccccHHHHHH
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS------DATDPFNRSHLTADMLIPNTELKAK 945 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~------~~~dP~tr~pL~~~~l~pn~~Lk~~ 945 (981)
...++.+++.|||+.+.+.+||++|+| |+|.+.+|.+|+.. ...||.+|++++.+++.||..|++.
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecw_A 12 VLEMIKEEVTCPICLELLKEPVSADCN-HSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANI 83 (85)
T ss_dssp CCCCCCTTTSCTTTCSCCSSCEECTTS-CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSS
T ss_pred HHHhCccCCCCcCCChhhCcceeCCCC-CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHh
Confidence 346688899999999999999999988 99999999999998 5699999999999999999876653
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=9e-09 Score=96.15 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=61.6
Q ss_pred CCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC---CCCCCCCCCCCCCccccHHHHHHHHHHHHH
Q 002017 884 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA---TDPFNRSHLTADMLIPNTELKAKIEEFIKS 952 (981)
Q Consensus 884 P~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~---~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~ 952 (981)
.+++.|||+.+.+++||++|+| |+|++.+|.+|+.... +||.+|.+++..++.+|..+.+.+++++..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~~ 89 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCD-HIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLKI 89 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTS-CCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCC-CHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHHH
Confidence 3457899999999999999988 9999999999999753 999999999999999999988888888765
No 20
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.57 E-value=2.5e-09 Score=93.71 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=58.8
Q ss_pred cCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc-------CCCCCCCCCCCCCCCccccHHHHHH
Q 002017 880 LGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-------DATDPFNRSHLTADMLIPNTELKAK 945 (981)
Q Consensus 880 ~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~-------~~~dP~tr~pL~~~~l~pn~~Lk~~ 945 (981)
..++.+++.|||+.+.+.+||++|+| |+|.+.+|.+|+.. ..+||.+|++++..++.+|..|++.
T Consensus 6 ~~~~~~~~~C~IC~~~~~~p~~l~Cg-H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l 77 (79)
T 2egp_A 6 SGNVQEEVTCPICLELLTEPLSLDCG-HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI 77 (79)
T ss_dssp SCCCCCCCEETTTTEECSSCCCCSSS-CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred HhhcccCCCCcCCCcccCCeeECCCC-CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence 46788999999999999999999988 99999999999987 4699999999999999999877643
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=8.5e-09 Score=91.10 Aligned_cols=66 Identities=17% Similarity=0.278 Sum_probs=59.5
Q ss_pred hcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc------CCCCCCCCCCCCCCCccccHHHHHH
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS------DATDPFNRSHLTADMLIPNTELKAK 945 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~------~~~dP~tr~pL~~~~l~pn~~Lk~~ 945 (981)
...++.+++.|||+.+.+++||++|+| |+|.+.+|.+|+.. ..+||++|++++.+++.||..|++.
T Consensus 12 ~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~ 83 (85)
T 2ecv_A 12 ILVNVKEEVTCPICLELLTQPLSLDCG-HSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI 83 (85)
T ss_dssp CCCCCCCCCCCTTTCSCCSSCBCCSSS-CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred HHHHccCCCCCCCCCcccCCceeCCCC-CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence 346788999999999999999999988 99999999999998 6799999999999999999876543
No 22
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=1e-08 Score=97.26 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=63.5
Q ss_pred CCCCCCCCCccccccCcccc-CCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHcC
Q 002017 883 IPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIKSQG 954 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DPVil-p~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~~ 954 (981)
+.+++.|||+.++|.|||++ |+| |+|++.+|.+|+. ..||.+|.++...++.+|..|++.|+.|...+.
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~Cg-H~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCE-HIFCSNCVSDCIG--TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSS-CCBCTTTGGGGTT--TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCC-CHHHHHHHHHHhc--CCCcCCCCcCccccccccHHHHHHHHHHHHHHH
Confidence 45679999999999999999 887 9999999999987 899999999999999999999999999987654
No 23
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=7e-08 Score=83.57 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=55.8
Q ss_pred hcCCCCCCCCCCCccccccCcccc-CCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccH
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNT 940 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVil-p~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~ 940 (981)
.+.++.+++.|||+.+.+.|||++ ++| |+|.+.+|.+|+....+||.+|++++.+++.++.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 8 NLSELTPYILCSICKGYLIDATTITECL-HTFCKSCIVRHFYYSNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CCCCCCGGGSCTTTSSCCSSCEECSSSC-CEECHHHHHHHHHHCSSCTTTCCCCCSSCSCCCC
T ss_pred hHhhcCCCCCCCCCChHHHCcCEECCCC-CHHHHHHHHHHHHcCCcCCCcCcccCcccccccC
Confidence 456788899999999999999997 877 9999999999999889999999999999988763
No 24
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.52 E-value=5.6e-08 Score=94.92 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=55.2
Q ss_pred CCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccHHHHHHHHHHHH
Q 002017 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNTELKAKIEEFIK 951 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~ 951 (981)
+.+++.|||+.+.|.|||++|+| |+|++.+|.+|+....+||++|+++... .++..+...|+.++.
T Consensus 50 ~~~~~~C~iC~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~--~~~~~~~~~i~~~~~ 115 (138)
T 4ayc_A 50 LENELQCIICSEYFIEAVTLNCA-HSFCSYCINEWMKRKIECPICRKDIKSK--TYSLVLDNCINKMVN 115 (138)
T ss_dssp HHHHSBCTTTCSBCSSEEEETTS-CEEEHHHHHHHTTTCSBCTTTCCBCCCE--EECHHHHHHHHHHHT
T ss_pred ccccCCCcccCcccCCceECCCC-CCccHHHHHHHHHcCCcCCCCCCcCCCC--CCccchhHHHHHHHH
Confidence 34568899999999999999988 9999999999999999999999998753 345666666666653
No 25
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.51 E-value=6.1e-08 Score=84.55 Aligned_cols=61 Identities=28% Similarity=0.309 Sum_probs=53.0
Q ss_pred hhcCCCCCCCCCCCccccccCccccC-CCCeeecHHHHHHHHhcC--CCCCCCCCCCC-CCCcccc
Q 002017 878 AALGDIPDEFLDPIQYTLMKDPVILP-SSRITVDRPVIQRHLLSD--ATDPFNRSHLT-ADMLIPN 939 (981)
Q Consensus 878 ~~~~~iP~ef~cPI~~~lM~DPVilp-~g~~t~dR~~I~~~L~~~--~~dP~tr~pL~-~~~l~pn 939 (981)
+...++++++.|||+.++|+|||++| +| |+|.+.+|.+|+... .+||.+|+++. .+.+++|
T Consensus 7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 7 GEDDPIPDELLCLICKDIMTDAVVIPCCG-NSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP 71 (74)
T ss_dssp SCCCCSCGGGSCSSSCCCCTTCEECSSSC-CEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred cccccCCCCCCCcCCChHHhCCeEcCCCC-CHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence 34577899999999999999999999 67 999999999999976 59999999854 5667776
No 26
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.50 E-value=3.9e-08 Score=98.59 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCccccccCcccc-CCCCeeecHHHHHHHHhc-CCCCCCCCCCCC-CCCccccHHHHHHHHHHHHH
Q 002017 881 GDIPDEFLDPIQYTLMKDPVIL-PSSRITVDRPVIQRHLLS-DATDPFNRSHLT-ADMLIPNTELKAKIEEFIKS 952 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVil-p~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~-~~~l~pn~~Lk~~I~~~~~~ 952 (981)
.++.+++.|||+.+.+.|||++ ||| |+|++.+|.+|+.. ..+||.||.+++ .+.+.||..|++.|+.|...
T Consensus 49 ~~~~~~~~C~IC~~~~~~p~~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 49 RSLHSELMCPICLDMLKNTMTTKECL-HRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS 122 (165)
T ss_dssp -CCHHHHBCTTTSSBCSSEEEETTTC-CEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred hhCCCCCCCcccChHhhCcCEeCCCC-ChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence 3456778999999999999998 777 99999999999998 579999999996 57799999999999999654
No 27
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.48 E-value=6.5e-08 Score=89.40 Aligned_cols=71 Identities=20% Similarity=0.127 Sum_probs=63.0
Q ss_pred CCCCCCCCCCccccccCccc-cCCCCeeecHHHHHHHHhcC-CCCCCCCCCCCCCCccccHHHHHHHHHHHHHc
Q 002017 882 DIPDEFLDPIQYTLMKDPVI-LPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPNTELKAKIEEFIKSQ 953 (981)
Q Consensus 882 ~iP~ef~cPI~~~lM~DPVi-lp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~~~~l~pn~~Lk~~I~~~~~~~ 953 (981)
.+.+++.|||+.+++.|||+ +++| |+|++.+|.+|+... .+||.+|.+++.+++++|..+.+.++....-+
T Consensus 18 ~l~~~~~C~IC~~~~~~p~~~~~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~ 90 (100)
T 3lrq_A 18 SIAEVFRCFICMEKLRDARLCPHCS-KLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ 90 (100)
T ss_dssp HHHHHTBCTTTCSBCSSEEECTTTC-CEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred cCCCCCCCccCCccccCccccCCCC-ChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence 35567889999999999999 8888 999999999999998 69999999999999999998888777765544
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=1.4e-07 Score=80.11 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=51.1
Q ss_pred hcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHh-cCCCCCCCCCCCCCCCc
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLL-SDATDPFNRSHLTADML 936 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~-~~~~dP~tr~pL~~~~l 936 (981)
....+++++.|||+.+.+++||++++| |+|.+.+|.+|+. ...+||.+|++++.+++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 8 FVKTVEDKYKCEKCHLVLCSPKQTECG-HRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp SCCSCCCCEECTTTCCEESSCCCCSSS-CCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred hhhcCCcCCCCCCCChHhcCeeECCCC-CHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 346688899999999999999999988 9999999999995 45699999999998775
No 29
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.42 E-value=1e-07 Score=95.90 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=64.8
Q ss_pred hcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC-CCCCCCCCCCCCCccccHHHHHHHHHHH
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLTADMLIPNTELKAKIEEFI 950 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL~~~~l~pn~~Lk~~I~~~~ 950 (981)
....++++|.|||+.++|.|||++++| |+|.+++|.+|+...+ +||.+|.+++.+++.|+..+++.|.++.
T Consensus 11 ~~~~~~~~~~C~IC~~~~~~pv~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 11 FDPPLESKYECPICLMALREAVQTPCG-HRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp ESSCCCGGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred hccCCCCCCCCCCCChhhcCcEECCCC-CHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence 446789999999999999999999988 9999999999998765 9999999999999999999999988643
No 30
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.37 E-value=5.8e-08 Score=91.58 Aligned_cols=73 Identities=22% Similarity=0.256 Sum_probs=63.9
Q ss_pred CCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc-CCCCCCCCCCCCC-------CCccccHHHHHHHHHHHHH
Q 002017 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTA-------DMLIPNTELKAKIEEFIKS 952 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~~-------~~l~pn~~Lk~~I~~~~~~ 952 (981)
....+++.|||+.+++.+||++|+| |+|++.+|.+|+.. ..+||++|.+++. .++.+|..|.+.|++|..+
T Consensus 10 ~~~~~~~~C~iC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p~ 88 (115)
T 3l11_A 10 IPSLSECQCGICMEILVEPVTLPCN-HTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYPR 88 (115)
T ss_dssp CCCHHHHBCTTTCSBCSSCEECTTS-CEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSHH
T ss_pred cCCCCCCCCccCCcccCceeEcCCC-CHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCCH
Confidence 3455679999999999999999988 99999999999987 4599999999974 7888999999999999755
Q ss_pred cC
Q 002017 953 QG 954 (981)
Q Consensus 953 ~~ 954 (981)
..
T Consensus 89 ~~ 90 (115)
T 3l11_A 89 EC 90 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.33 E-value=3.5e-07 Score=78.84 Aligned_cols=58 Identities=12% Similarity=0.209 Sum_probs=51.5
Q ss_pred hhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc---CCCCCCCCCCCCCCCc
Q 002017 878 AALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS---DATDPFNRSHLTADML 936 (981)
Q Consensus 878 ~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~---~~~dP~tr~pL~~~~l 936 (981)
....++++++.|||+.+.+.+||++|+| |+|.+.+|.+|+.. ..+||++|++++.+++
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 12 QFVNKLQEEVICPICLDILQKPVTIDCG-HNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSEEECTTC-CEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred HHHHhCccCCEeccCCcccCCeEEcCCC-ChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 3456788999999999999999999988 99999999999973 4599999999998775
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.30 E-value=2.1e-07 Score=87.81 Aligned_cols=66 Identities=18% Similarity=0.096 Sum_probs=56.7
Q ss_pred CCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc-CCCCCCCCCCCCCCCcc-ccHHHHHHHHHH
Q 002017 883 IPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS-DATDPFNRSHLTADMLI-PNTELKAKIEEF 949 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~~~~l~-pn~~Lk~~I~~~ 949 (981)
+++++.|||+.++|.|||++|+| |+|.+.+|.+|+.. ..+||.+|.+++.+++. ++..+.+.|..+
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCK-HLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTS-CEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred ccCCCCCCCCCcHhcCcEEcCCC-CcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence 45578999999999999999988 99999999999998 57999999999988876 566666666543
No 33
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.22 E-value=1.6e-07 Score=92.37 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCC-CCCCCCCCCC---------CCCccccHHHHHHHHH
Q 002017 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA-TDPFNRSHLT---------ADMLIPNTELKAKIEE 948 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~-~dP~tr~pL~---------~~~l~pn~~Lk~~I~~ 948 (981)
..++++|.|||+.++|+|||.+++| |+|++.+|.+|+.... +||.+|.++. .+++.|+..+++.|.+
T Consensus 26 ~~l~~~~~C~IC~~~~~~pv~~~Cg-H~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~ 102 (141)
T 3knv_A 26 TKLEAKYLCSACRNVLRRPFQAQCG-HRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES 102 (141)
T ss_dssp GGCCGGGBCTTTCSBCSSEEECTTS-CEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred ccCCcCcCCCCCChhhcCcEECCCC-CccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence 4688999999999999999999988 9999999999998775 9999999764 3456799999988875
No 34
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.16 E-value=1.1e-06 Score=75.20 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=52.3
Q ss_pred CCCCCCCCCCccccccCc-------cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q 002017 882 DIPDEFLDPIQYTLMKDP-------VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 939 (981)
Q Consensus 882 ~iP~ef~cPI~~~lM~DP-------Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn 939 (981)
...+++.|||+.+.+.+| |++++| |+|.+.+|.+|+....+||++|.+++.+++.++
T Consensus 6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CCTTCCBCTTTCCBHHHHHTTTCCEEECTTS-CEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCCcccChhhhccccccCCeEeCCCC-ChHhHHHHHHHHHcCCCCCCCCCccChhheeec
Confidence 356789999999999999 889988 999999999999999999999999999988875
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.12 E-value=2.1e-06 Score=72.60 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=48.7
Q ss_pred CCCCCCCccc-cccCc----cccCCCCeeecHHHHHHHHhcC-CCCCCCCCCCCCCCcccc
Q 002017 885 DEFLDPIQYT-LMKDP----VILPSSRITVDRPVIQRHLLSD-ATDPFNRSHLTADMLIPN 939 (981)
Q Consensus 885 ~ef~cPI~~~-lM~DP----Vilp~g~~t~dR~~I~~~L~~~-~~dP~tr~pL~~~~l~pn 939 (981)
+++.|||+.+ .+.+| |++++| |+|.+++|.+|+.++ .+||.+|.+++..++.|+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-CCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-CHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence 6889999999 99999 468888 999999999998765 589999999999998876
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=2.9e-06 Score=75.50 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=50.4
Q ss_pred hcCCCCCCCCCCCccccccC----ccccCCCCeeecHHHHHHHHhcC---CCCCCCCCCCCCCC
Q 002017 879 ALGDIPDEFLDPIQYTLMKD----PVILPSSRITVDRPVIQRHLLSD---ATDPFNRSHLTADM 935 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~D----PVilp~g~~t~dR~~I~~~L~~~---~~dP~tr~pL~~~~ 935 (981)
...++.+++.|||+.+.+.+ ||++|+| |+|.+.+|.+|+... .+||++|++++..+
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 70 (88)
T 2ct2_A 8 NLDALREVLECPICMESFTEEQLRPKLLHCG-HTICRQCLEKLLASSINGVRCPFCSKITRITS 70 (88)
T ss_dssp SCCCCCSCCBCTTTCCBCCTTSSCEEECSSS-CEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred ChhhccCCCCCccCCccccccCCCeEECCCC-ChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence 44678889999999999999 9999988 999999999999986 69999999988654
No 37
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.09 E-value=1.4e-06 Score=72.86 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=50.0
Q ss_pred CCCCCCCccccccCc-------cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q 002017 885 DEFLDPIQYTLMKDP-------VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 939 (981)
Q Consensus 885 ~ef~cPI~~~lM~DP-------Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn 939 (981)
+++.|||+.+.+.+| |++++| |+|.+.+|.+|+.+..+||++|++++.+++.|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-CEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-CchhHHHHHHHHHcCCCCCCCCccCCccceeee
Confidence 578899999999998 889988 999999999999999999999999999988775
No 38
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=8e-07 Score=76.64 Aligned_cols=55 Identities=15% Similarity=0.046 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 002017 881 GDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADML 936 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l 936 (981)
....+++.|||+.+.+++||++|+| |+|.+.+|.+|+....+||++|++++.+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~Cg-H~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 10 APSLTVPECAICLQTCVHPVSLPCK-HVFCYLCVKGASWLGKRCALCRQEIPEDFL 64 (71)
T ss_dssp CSSSSCCBCSSSSSBCSSEEEETTT-EEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred ccCCCCCCCccCCcccCCCEEccCC-CHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence 3456779999999999999999988 999999999999999999999999886544
No 39
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=5.8e-06 Score=69.34 Aligned_cols=49 Identities=14% Similarity=0.182 Sum_probs=42.9
Q ss_pred hhcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc---CCCCCCC
Q 002017 878 AALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS---DATDPFN 927 (981)
Q Consensus 878 ~~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~---~~~dP~t 927 (981)
....++.+++.|||+.+.++|||++|+| |+|.+.+|.+|+.. ..+||.+
T Consensus 12 ~~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 12 QFVNKLQEEVICPICLDILQKPVTIDCG-HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCCCCCBCTTTCSBCSSCEECTTS-SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred HHHHhCccCCCCCcCCchhCCeEEeCCC-CcchHHHHHHHHHcCCCCCcCcCC
Confidence 3456788999999999999999999988 99999999999984 3589874
No 40
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.92 E-value=6.7e-06 Score=69.66 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCccccccCc-------cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 881 GDIPDEFLDPIQYTLMKDP-------VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DP-------Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
...++++.|||+.+.+.+| |++++| |+|.+.+|.+|+....+||++|++++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSS-CEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCC-ChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 4578889999999999999 889988 999999999999999999999999864
No 41
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.88 E-value=8.1e-06 Score=71.31 Aligned_cols=59 Identities=17% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCCCCCCCCCCccccccCcc---ccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCccccH
Q 002017 881 GDIPDEFLDPIQYTLMKDPV---ILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPNT 940 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~DPV---ilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn~ 940 (981)
.+..+++.|||+.+.+.+|+ ++|+| |+|.+.+|.+|+....+||++|.+++..++.+++
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCN-HLFHDSCIVPWLEQHDSCPVCRKSLTGQNTATNP 71 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTS-CEEETTTTHHHHTTTCSCTTTCCCCCCSCSCCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCC-CeecHHHHHHHHHcCCcCcCcCCccCCcccCCCC
Confidence 34667889999999999874 56888 9999999999999889999999999998888763
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.73 E-value=1.3e-05 Score=76.17 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=51.0
Q ss_pred CCCCCCCCCccccccCc-------cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q 002017 883 IPDEFLDPIQYTLMKDP-------VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 939 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DP-------Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn 939 (981)
-++++.|||+.+.+++| |++++| |+|.+.+|.+|+.+..+||++|++++..++.++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTC-CEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCC-ChhhHHHHHHHHHhCCCCCCCCCcCcccccccc
Confidence 36789999999999999 999998 999999999999999999999999998887654
No 43
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.70 E-value=2.2e-05 Score=64.29 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=41.4
Q ss_pred hcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhc---CCCCCCC
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLS---DATDPFN 927 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~---~~~dP~t 927 (981)
...++.+++.|||..+.+++||++|+| |+|.+..|.+|+.+ ..+||++
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 8 ALENLQVEASCSVCLEYLKEPVIIECG-HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSSCSCCCCBCSSSCCBCSSCCCCSSC-CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred HhhccccCCCCccCCcccCccEeCCCC-CccCHHHHHHHHHhcCCCCCCCCC
Confidence 345678899999999999999999988 99999999999654 4688864
No 44
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.62 E-value=4.3e-05 Score=64.80 Aligned_cols=48 Identities=17% Similarity=0.096 Sum_probs=43.6
Q ss_pred CCCCCCCccccccCc-cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 885 DEFLDPIQYTLMKDP-VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 885 ~ef~cPI~~~lM~DP-Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
++..|||+.+.+.+| +++|+| |+|.+.+|.+|+....+||++|.+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCL-HAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTT-EEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCC-CeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 467899999999998 678888 999999999999999999999999873
No 45
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=1.4e-05 Score=68.37 Aligned_cols=56 Identities=20% Similarity=0.140 Sum_probs=50.3
Q ss_pred hcCCCCCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADML 936 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l 936 (981)
...+..+++.|||+.+.+.+ |++|+| |+|.+.+|.+|+....+||++|++++..+.
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~-~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 63 (70)
T 2ecn_A 8 RVKQLTDEEECCICMDGRAD-LILPCA-HSFCQKCIDKWSDRHRNCPICRLQMTGANE 63 (70)
T ss_dssp CCCCCCCCCCCSSSCCSCCS-EEETTT-EEECHHHHHHSSCCCSSCHHHHHCTTCCCC
T ss_pred hhhcCCCCCCCeeCCcCccC-cccCCC-CcccHHHHHHHHHCcCcCCCcCCcccCCCc
Confidence 34567889999999999999 999998 999999999999988999999999986553
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.00011 Score=63.45 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=48.0
Q ss_pred hcCCCCCCCCCCCccccccCcccc---CCCCeeecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 879 ALGDIPDEFLDPIQYTLMKDPVIL---PSSRITVDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~lM~DPVil---p~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
...+..++..|||+.+.+.+|+.+ |+| |+|.+.+|.+|+....+||++|.++..
T Consensus 8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~-H~f~~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 8 KVKELNLHELCAVCLEDFKPRDELGICPCK-HAFHRKCLIKWLEVRKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCCCSCBCSSSCCBCCSSSCEEEETTT-EEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred ccccCCCCCCCcCCCcccCCCCcEEEcCCC-CEecHHHHHHHHHcCCcCCCcCccccc
Confidence 345678889999999999988766 988 999999999999999999999999874
No 47
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=97.49 E-value=9.5e-05 Score=62.91 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=46.1
Q ss_pred CCCCCCCCCCCccccc---cCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCC
Q 002017 881 GDIPDEFLDPIQYTLM---KDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTAD 934 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM---~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~ 934 (981)
.+..++..|||+.+.+ .+|+++|+| |+|.+.+|.+|+..+.+||++|.+++..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCM-HLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTS-CEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCC-CHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 4566778999999888 456789988 9999999999999999999999998764
No 48
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.47 E-value=7e-05 Score=60.68 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=42.8
Q ss_pred CCCCCCCccccccC----ccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 002017 885 DEFLDPIQYTLMKD----PVILPSSRITVDRPVIQRHLLSDATDPFNRSHLT 932 (981)
Q Consensus 885 ~ef~cPI~~~lM~D----PVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 932 (981)
++..|||+.+.+.+ |+++|+| |+|.+..|.+|+....+||++|.+++
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-HLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-CEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-CcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 56789999999977 8889988 99999999999999999999999875
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=97.45 E-value=5.8e-05 Score=85.43 Aligned_cols=53 Identities=19% Similarity=0.068 Sum_probs=47.0
Q ss_pred CCCCCCCCccccccCccccCCCCeeecHHHHHHHHh-cCCCCCCCCCCCCCCCcc
Q 002017 884 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLL-SDATDPFNRSHLTADMLI 937 (981)
Q Consensus 884 P~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~-~~~~dP~tr~pL~~~~l~ 937 (981)
.+...||||.+.++|||++||| |+|++.||.+|+. ...+||+||++++...++
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCG-H~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCG-HLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTC-CEECHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCCCCccCcCCCCeEEeCCC-ChhhHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 3457899999999999999999 9999999999999 567999999999876544
No 50
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=97.42 E-value=8.3e-05 Score=60.35 Aligned_cols=49 Identities=18% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCCCCCCCCccccccC---ccccC-CCCeeecHHHHHHHHhcCCCCCCCCCCCC
Q 002017 883 IPDEFLDPIQYTLMKD---PVILP-SSRITVDRPVIQRHLLSDATDPFNRSHLT 932 (981)
Q Consensus 883 iP~ef~cPI~~~lM~D---PVilp-~g~~t~dR~~I~~~L~~~~~dP~tr~pL~ 932 (981)
+.++..|||..+.+.+ |+++| +| |+|.+..|.+|+.+..+||++|.++.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~-H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCG-HGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSC-CEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCC-CcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 3467789999999988 88998 66 99999999999999999999999875
No 51
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=97.39 E-value=0.0001 Score=66.62 Aligned_cols=52 Identities=21% Similarity=0.294 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCccccccC---ccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 881 GDIPDEFLDPIQYTLMKD---PVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM~D---PVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
+...++..|||+.+.+.+ ++++|+| |+|.+.+|.+|+....+||++|.++..
T Consensus 35 ~~~~~~~~C~IC~~~~~~~~~~~~l~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 35 GAVGQEMCCPICCSEYVKGDVATELPCH-HYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSSSSCSEETTTTEECCTTCEEEEETTT-EEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred cccCCCCCCcccChhhcCCCcEEecCCC-ChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 345678899999999988 8899988 999999999999999999999998764
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00014 Score=63.00 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=45.5
Q ss_pred CCCCCCCCCccccccCc---cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCC
Q 002017 883 IPDEFLDPIQYTLMKDP---VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTAD 934 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DP---Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~ 934 (981)
..++..|||+.+.+.+| +++|+| |+|.+.+|.+|+..+.+||++|++++..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~-H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCN-HEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTT-EEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCC-CHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567899999999998 789988 9999999999999999999999998753
No 53
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.24 E-value=8.7e-05 Score=61.19 Aligned_cols=48 Identities=15% Similarity=0.032 Sum_probs=42.2
Q ss_pred CCCCCCCCccccccCccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002017 884 PDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADM 935 (981)
Q Consensus 884 P~ef~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~ 935 (981)
.+++.|||..+.+.+||++|+| |+|.+..|.+ ....||++|++++...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~Cg-H~fC~~Ci~~---~~~~CP~Cr~~~~~~~ 51 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCL-HTLCSGCLEA---SGMQCPICQAPWPLGA 51 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTS-CCSBTTTCSS---SSSSCSSCCSSSSCCS
T ss_pred ccCCCceEeCCccCCeEEcCCC-CcccHHHHcc---CCCCCCcCCcEeecCC
Confidence 4678999999999999999988 9999999988 3569999999988643
No 54
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=97.22 E-value=0.00031 Score=62.21 Aligned_cols=55 Identities=16% Similarity=0.128 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCccccc--cCccccC--CCCeeecHHHHHHHHhc-CCCCCCCCCCCCCCCc
Q 002017 881 GDIPDEFLDPIQYTLM--KDPVILP--SSRITVDRPVIQRHLLS-DATDPFNRSHLTADML 936 (981)
Q Consensus 881 ~~iP~ef~cPI~~~lM--~DPVilp--~g~~t~dR~~I~~~L~~-~~~dP~tr~pL~~~~l 936 (981)
.+..+++.|||+.+.+ .||+++| +| |+|.+.+|.++..+ ...||.+|++.+...+
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CG-H~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCG-YQICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTS-CCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred cccccCCcCCccCccCccccccccccCCC-CCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 4567899999999999 5788887 77 99999999998754 4699999999987655
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.12 E-value=0.00015 Score=68.75 Aligned_cols=56 Identities=14% Similarity=0.051 Sum_probs=51.3
Q ss_pred CCCCCCCCCccccccCc-------cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCCcccc
Q 002017 883 IPDEFLDPIQYTLMKDP-------VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADMLIPN 939 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DP-------Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~pn 939 (981)
-++.+.|||+.+.+++| |++++| |+|...+|.+|+....+||.+|.+++.+++.|+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECG-HVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTS-BEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCC-ChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence 35678999999999998 888988 999999999999999999999999999988875
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=97.05 E-value=4.5e-05 Score=66.52 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=40.7
Q ss_pred CCCCCCCCccccccCccccCCCCee-ecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 884 PDEFLDPIQYTLMKDPVILPSSRIT-VDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 884 P~ef~cPI~~~lM~DPVilp~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
.+++.|||+.+.+.|||++|+| |+ |.+.+|.+| .+||++|++++.
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCG-HLVTCKQCAEAV----DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTC-CBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCC-ChhHHHHhhhcC----ccCCCcCcCccC
Confidence 3456899999999999999999 98 999999999 899999998864
No 57
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=96.97 E-value=0.00049 Score=64.28 Aligned_cols=50 Identities=8% Similarity=-0.088 Sum_probs=42.6
Q ss_pred CCCCCCCCCccccccCcc------------------ccCCCCeeecHHHHHHHHh-----cCCCCCCCCCCCCC
Q 002017 883 IPDEFLDPIQYTLMKDPV------------------ILPSSRITVDRPVIQRHLL-----SDATDPFNRSHLTA 933 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DPV------------------ilp~g~~t~dR~~I~~~L~-----~~~~dP~tr~pL~~ 933 (981)
.+.+..|||+.+.+.+|+ ++|+| |+|.+.+|.+|+. ...+||.+|.++..
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCC-CcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 445668999999999987 78888 9999999999995 35699999998764
No 58
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.80 E-value=0.00017 Score=62.84 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=38.6
Q ss_pred CCCCCCccccccCccccCCCCee-ecHHHHHHHHhcCCCCCCCCCCCCCC
Q 002017 886 EFLDPIQYTLMKDPVILPSSRIT-VDRPVIQRHLLSDATDPFNRSHLTAD 934 (981)
Q Consensus 886 ef~cPI~~~lM~DPVilp~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~~~ 934 (981)
++.|||+.+.++|||++|+| |+ |.+.++.+ ...||++|++++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCg-H~~~C~~C~~~----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCG-HLVTCKQCAEA----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSC-CCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCCCEEEecCC-CHHHHHHHhhC----CCCCccCCceecCc
Confidence 45799999999999999999 99 99999964 37999999998753
No 59
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.63 E-value=0.00078 Score=59.62 Aligned_cols=51 Identities=8% Similarity=0.007 Sum_probs=42.4
Q ss_pred CCCCCCCccccccC--------------ccccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCCCC
Q 002017 885 DEFLDPIQYTLMKD--------------PVILPSSRITVDRPVIQRHLLSDATDPFNRSHLTADM 935 (981)
Q Consensus 885 ~ef~cPI~~~lM~D--------------PVilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~~~ 935 (981)
++-.|+|+.+-+.+ ++++|..||+|-+.+|.+||..+.+||++|+++...+
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQR 78 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchhh
Confidence 45569999999987 5666644499999999999999999999999987543
No 60
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=96.38 E-value=0.0022 Score=54.33 Aligned_cols=47 Identities=11% Similarity=-0.072 Sum_probs=42.8
Q ss_pred CCCCCCCccccccCcccc--CCCCee-ecHHHHHHHHhcCCCCCCCCCCCC
Q 002017 885 DEFLDPIQYTLMKDPVIL--PSSRIT-VDRPVIQRHLLSDATDPFNRSHLT 932 (981)
Q Consensus 885 ~ef~cPI~~~lM~DPVil--p~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~ 932 (981)
++..|+|+.+-.+|+|++ |+| |. +....+.+|...+..||++|++++
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTG-HLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEE-EEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCC-ChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456799999999999988 998 88 899999999998889999999985
No 61
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=96.21 E-value=0.0005 Score=77.05 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=41.5
Q ss_pred CCCCCCCCCccccccCccccCCCCee-ecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 883 IPDEFLDPIQYTLMKDPVILPSSRIT-VDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DPVilp~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
+.+++.|||+.+.+.|||++||| |+ |++.+|.+| ..||.||.+++.
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCg-H~~fC~~C~~~~----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCG-HLVVCQECAPSL----RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTC-CEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCC-ChhHhHHHHhcC----CcCCCCCCCccC
Confidence 34568999999999999999999 88 999999988 799999999874
No 62
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=96.08 E-value=0.0031 Score=53.16 Aligned_cols=46 Identities=11% Similarity=-0.024 Sum_probs=42.2
Q ss_pred CCCCCCccccccCcccc--CCCCee-ecHHHHHHHHhcCCCCCCCCCCCC
Q 002017 886 EFLDPIQYTLMKDPVIL--PSSRIT-VDRPVIQRHLLSDATDPFNRSHLT 932 (981)
Q Consensus 886 ef~cPI~~~lM~DPVil--p~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~ 932 (981)
+..|+|+.+-.+|||++ |+| |. +.+..+.+|...+++||++|++++
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTG-HLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEE-EEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCCCeEEEecCCC-CHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 45799999999999998 999 87 999999999988889999999985
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=95.98 E-value=0.00072 Score=59.80 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=39.2
Q ss_pred CCCCCCCccccccCccccCCCCee-ecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 885 DEFLDPIQYTLMKDPVILPSSRIT-VDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 885 ~ef~cPI~~~lM~DPVilp~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
++..|+|+.+...|||++|+| |. +.+.++.+| ..||++|++++.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCg-H~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCG-HTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTC-BCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCCEeEEeCcccCcEEEECCC-CHHHHHHHHHhc----CcCCCCCchhhC
Confidence 345799999999999999999 88 999999876 499999999875
No 64
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=95.77 E-value=0.0074 Score=56.44 Aligned_cols=47 Identities=13% Similarity=-0.038 Sum_probs=40.4
Q ss_pred CCCCCCccccccCc------------------cccCCCCeeecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 886 EFLDPIQYTLMKDP------------------VILPSSRITVDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 886 ef~cPI~~~lM~DP------------------Vilp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
+-.|+|+.+-|.+| +++|+| |.|-+.+|.+||..+.+||.+|++...
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-HAFHFHCISRWLKTRQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-CEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccC-cEECHHHHHHHHHcCCcCcCCCCccee
Confidence 45699999999887 336777 999999999999999999999998653
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.61 E-value=0.011 Score=53.36 Aligned_cols=51 Identities=4% Similarity=-0.164 Sum_probs=42.0
Q ss_pred CCCCCCCCccccccCcccc---CCCCeeecHHHHHHHHhcC--------CCCCC--CCCC--CCCCC
Q 002017 884 PDEFLDPIQYTLMKDPVIL---PSSRITVDRPVIQRHLLSD--------ATDPF--NRSH--LTADM 935 (981)
Q Consensus 884 P~ef~cPI~~~lM~DPVil---p~g~~t~dR~~I~~~L~~~--------~~dP~--tr~p--L~~~~ 935 (981)
.+.|.|||+.+.+.+|+++ ++| |+|++.+|.+|+... -.||. ++.+ ++.++
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~Cg-H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQ-CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTT-EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred CCCcCCcccCcccccccceEcCCCC-CcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence 3578999999999999975 677 999999999998741 27999 9988 66544
No 66
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=94.41 E-value=0.021 Score=52.39 Aligned_cols=59 Identities=17% Similarity=0.245 Sum_probs=48.2
Q ss_pred cCCCCCCCCCCCccccccCccccCCCC-----eeecHHHHHHHHhcCCCCCCCCCCCCCCCccc
Q 002017 880 LGDIPDEFLDPIQYTLMKDPVILPSSR-----ITVDRPVIQRHLLSDATDPFNRSHLTADMLIP 938 (981)
Q Consensus 880 ~~~iP~ef~cPI~~~lM~DPVilp~g~-----~t~dR~~I~~~L~~~~~dP~tr~pL~~~~l~p 938 (981)
+.-.++...||||.++=+.=|....+. .-||..++.+.+..+...|++|+|+|.+|++-
T Consensus 21 f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~~~HPLSREpit~sMIv~ 84 (102)
T 2kkx_A 21 LQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEGLPHPLTREPITASIIVK 84 (102)
T ss_dssp TTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHTCCCTTTCCCCCTTTEEC
T ss_pred ccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcCCCCCCccCCCCHhhEec
Confidence 334455569999999988888765432 24999999999999999999999999998764
No 67
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.39 E-value=0.031 Score=49.61 Aligned_cols=52 Identities=13% Similarity=0.124 Sum_probs=43.0
Q ss_pred CCCCCCCCccccc--cCccccCCC----CeeecHHHHHHHHhcCC--CCCCCCCCCCCCC
Q 002017 884 PDEFLDPIQYTLM--KDPVILPSS----RITVDRPVIQRHLLSDA--TDPFNRSHLTADM 935 (981)
Q Consensus 884 P~ef~cPI~~~lM--~DPVilp~g----~~t~dR~~I~~~L~~~~--~dP~tr~pL~~~~ 935 (981)
.++-.|+|+.+-+ .+|+++|+. .|.|-+.+|.+||...+ +||++|.++..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 3456899998665 579999974 49999999999999864 9999999988644
No 68
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.18 E-value=0.031 Score=47.86 Aligned_cols=46 Identities=13% Similarity=0.006 Sum_probs=40.3
Q ss_pred CCCCCCCCCccccccCccccCCCCee-ecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 883 IPDEFLDPIQYTLMKDPVILPSSRIT-VDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DPVilp~g~~t-~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
-.++..|+|+.+-..|||++|+| |. +.+.++.+ ...||++|+++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCg-H~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCR-HTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTT-BCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCC-ChhhhHHHHhc----CCCCCCCCcchhc
Confidence 34578999999999999999999 88 99999984 4799999999874
No 69
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=93.74 E-value=0.011 Score=56.21 Aligned_cols=45 Identities=16% Similarity=0.039 Sum_probs=0.0
Q ss_pred CCCCccccccCc-----------------cc-cCCCCeeecHHHHHHHHhcCCCCCCCCCCCCC
Q 002017 888 LDPIQYTLMKDP-----------------VI-LPSSRITVDRPVIQRHLLSDATDPFNRSHLTA 933 (981)
Q Consensus 888 ~cPI~~~lM~DP-----------------Vi-lp~g~~t~dR~~I~~~L~~~~~dP~tr~pL~~ 933 (981)
.|+|+.+-+.+| |+ +|+| |.|.+.+|.+||....+||.+|++...
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-HAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcC-ceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 699999998875 33 4666 999999999999999999999998654
No 70
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=93.61 E-value=0.028 Score=63.15 Aligned_cols=64 Identities=17% Similarity=0.135 Sum_probs=56.3
Q ss_pred CCCCCCCccccccCccccCCCCee--ecHHHHHHHHhcCC--CCCCCCCCCCCCCccccHHHHHHHHH
Q 002017 885 DEFLDPIQYTLMKDPVILPSSRIT--VDRPVIQRHLLSDA--TDPFNRSHLTADMLIPNTELKAKIEE 948 (981)
Q Consensus 885 ~ef~cPI~~~lM~DPVilp~g~~t--~dR~~I~~~L~~~~--~dP~tr~pL~~~~l~pn~~Lk~~I~~ 948 (981)
-.+.|||+...|+.||-.-.|.|. ||..++.+.-...+ .||+|+++++.++|+.+.-+.+.+..
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~ 315 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN 315 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence 348999999999999998878787 99999999776654 99999999999999999998877654
No 71
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=93.41 E-value=0.084 Score=59.13 Aligned_cols=66 Identities=9% Similarity=0.071 Sum_probs=57.6
Q ss_pred CCCCCCCCCccccccCccccCCCCee--ecHHHHHHHHhcCC--CCCCCCCCCCCCCccccHHHHHHHHH
Q 002017 883 IPDEFLDPIQYTLMKDPVILPSSRIT--VDRPVIQRHLLSDA--TDPFNRSHLTADMLIPNTELKAKIEE 948 (981)
Q Consensus 883 iP~ef~cPI~~~lM~DPVilp~g~~t--~dR~~I~~~L~~~~--~dP~tr~pL~~~~l~pn~~Lk~~I~~ 948 (981)
+.=.+.|||+...|+.||-.-.|.|. ||..++.+.....+ .||+|+++++.++|+-+.-+.+.+..
T Consensus 212 ~~vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 212 LRVSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND 281 (360)
T ss_dssp EEEESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred eEEeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence 34457999999999999998877787 99999999877764 99999999999999999998887754
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.84 E-value=0.71 Score=40.38 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=39.1
Q ss_pred CCCCccccccCccccCCCCeeecHHHHHHHHhcC--CCCCCCCCCCCC
Q 002017 888 LDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSD--ATDPFNRSHLTA 933 (981)
Q Consensus 888 ~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~--~~dP~tr~pL~~ 933 (981)
.|+|+..++..=+..+.++|.|-..+|.+||.+. .+||.+|.+...
T Consensus 17 ~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 17 ICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp BCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 6999998887555555667999999999999987 799999998874
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=84.15 E-value=0.19 Score=56.06 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=38.3
Q ss_pred CCCCCccccccC----ccc---cCCCCeeecHHHHHHHHhcC-----------CCCCCCCCCCCC
Q 002017 887 FLDPIQYTLMKD----PVI---LPSSRITVDRPVIQRHLLSD-----------ATDPFNRSHLTA 933 (981)
Q Consensus 887 f~cPI~~~lM~D----PVi---lp~g~~t~dR~~I~~~L~~~-----------~~dP~tr~pL~~ 933 (981)
--|+||+..+.+ |-. .+.|||.|-..||.+||.+. ++||+||+|++.
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 369999999887 543 33556999999999999873 579999999874
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=65.70 E-value=6 Score=32.87 Aligned_cols=48 Identities=8% Similarity=-0.054 Sum_probs=37.8
Q ss_pred CCCCCCccccccCccccCCC-C---eeecHHHHHHHHhc--CCCCCCCCCCCCC
Q 002017 886 EFLDPIQYTLMKDPVILPSS-R---ITVDRPVIQRHLLS--DATDPFNRSHLTA 933 (981)
Q Consensus 886 ef~cPI~~~lM~DPVilp~g-~---~t~dR~~I~~~L~~--~~~dP~tr~pL~~ 933 (981)
+-.|.|..+--.+|+++|+. + ..+=+++|.+|+.. +.+||+++.+...
T Consensus 6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 34588888777889999953 1 37999999999986 4699999998754
No 75
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=39.18 E-value=62 Score=27.60 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHhcchhHHHHHHHHHhhhHHHHHHHHHH
Q 002017 657 PSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNK 696 (981)
Q Consensus 657 ~~~r~~l~~~a~~~~~~~FvrFvn~liND~t~lLDE~L~~ 696 (981)
|.|++-+.-.|++ .-|.|++|.||++|..
T Consensus 3 pl~~Qll~l~Aed-----------~AieDaiy~L~~aL~~ 31 (65)
T 2f6m_A 3 DGLNQLYNLVAQD-----------YALTDTIEALSRMLHR 31 (65)
T ss_dssp HHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHc
Confidence 5566666555654 3589999999999863
No 76
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=35.72 E-value=30 Score=36.51 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=40.8
Q ss_pred CCCCCccccccCccccCCCCeeecHHHHHHHHhcCC--CCCCCCCCCCCC
Q 002017 887 FLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDA--TDPFNRSHLTAD 934 (981)
Q Consensus 887 f~cPI~~~lM~DPVilp~g~~t~dR~~I~~~L~~~~--~dP~tr~pL~~~ 934 (981)
-.|.|+.++..-=+..+++++.|-+.++.+|+.+.+ +||.|+.+.+.+
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 359999998887777776779999999999998754 999999987754
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=33.72 E-value=22 Score=31.79 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=28.4
Q ss_pred CCCCCCCccc-cccCccc--cCCCCeeecHHHHHH-HH
Q 002017 885 DEFLDPIQYT-LMKDPVI--LPSSRITVDRPVIQR-HL 918 (981)
Q Consensus 885 ~ef~cPI~~~-lM~DPVi--lp~g~~t~dR~~I~~-~L 918 (981)
++..|+|..+ ...+||. ++++ ++|.+..+.+ |-
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~-~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCE-VSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTT-EEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCC-hHHhHHHCHHHhc
Confidence 5688999996 4889999 8888 9999999998 54
No 78
>2fd4_A Avirulence protein AVRPTOB; ring finger, U-BOX, ubiquitin ligase,; 1.80A {Pseudomonas syringae}
Probab=33.68 E-value=49 Score=30.47 Aligned_cols=60 Identities=20% Similarity=0.307 Sum_probs=41.7
Q ss_pred HhhhcCCCCCCCCCCCccccccCccccCCCC-------------------------eeecHHHHHHHHhcCCCCCCCCCC
Q 002017 876 AEAALGDIPDEFLDPIQYTLMKDPVILPSSR-------------------------ITVDRPVIQRHLLSDATDPFNRSH 930 (981)
Q Consensus 876 ~e~~~~~iP~ef~cPI~~~lM~DPVilp~g~-------------------------~t~dR~~I~~~L~~~~~dP~tr~p 930 (981)
+|.-+.|+-+.+.+--|.+|+-.|.-|...+ .-+|-.-+.+||.+++..|.||+|
T Consensus 28 ~~~gFkDaAdh~~ddaT~CLFGe~LSL~np~qQVIGLA~~~td~~~~Ysqe~nK~l~FMDMkKLAq~La~kP~HPm~r~~ 107 (122)
T 2fd4_A 28 EELGFKDAADHHTDDVTHCLFGGELSLSNPDQQVIGLAGNPTDTSQPYSQEGNKDLAFMDMKKLAQFLAGKPEHPMTRET 107 (122)
T ss_dssp --CCCCCCCC----CCCBCTTSSBCCTTCTTCCEEEEESSCCCTTSCCC-----CEEEEEHHHHHHHHHHSCBCTTTCCB
T ss_pred cccCcchhhhcCCCCcceecccCccccCCCCceeEEeecCCCCCccccchhcCcceeeeeHHHHHHHhcCCCCCCcccCc
Confidence 4455678888787778888887666543221 137888999999999999999999
Q ss_pred CCCCC
Q 002017 931 LTADM 935 (981)
Q Consensus 931 L~~~~ 935 (981)
|+.+.
T Consensus 108 L~aen 112 (122)
T 2fd4_A 108 LNAEN 112 (122)
T ss_dssp CSTTT
T ss_pred cchhh
Confidence 99765
No 79
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=24.97 E-value=22 Score=28.28 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=13.3
Q ss_pred hcCCCCCCCCCCCccc
Q 002017 879 ALGDIPDEFLDPIQYT 894 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~ 894 (981)
.+.++|++|.||+++.
T Consensus 23 ~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 23 PFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CGGGSCTTCBCTTTCC
T ss_pred chhhCCCCCcCcCCCC
Confidence 3568999999999874
No 80
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=23.37 E-value=31 Score=28.00 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=13.0
Q ss_pred cCCCCCCCCCCCccc
Q 002017 880 LGDIPDEFLDPIQYT 894 (981)
Q Consensus 880 ~~~iP~ef~cPI~~~ 894 (981)
+.++|++|.||+++.
T Consensus 30 f~~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 30 FEDLPDDWACPVCGA 44 (52)
T ss_dssp TTSSCTTCCCSSSCC
T ss_pred hHHCCCCCcCCCCCC
Confidence 567999999999874
No 81
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=21.64 E-value=34 Score=30.44 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.0
Q ss_pred hcCCCCCCCCCCCcccc
Q 002017 879 ALGDIPDEFLDPIQYTL 895 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~l 895 (981)
.+.++|++|.||+++.-
T Consensus 53 ~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 53 RWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CTTTSCTTCCCTTTCCC
T ss_pred ChhHCCCCCcCCCCCCC
Confidence 35789999999999853
No 82
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=21.33 E-value=28 Score=28.58 Aligned_cols=16 Identities=31% Similarity=0.636 Sum_probs=13.3
Q ss_pred hcCCCCCCCCCCCccc
Q 002017 879 ALGDIPDEFLDPIQYT 894 (981)
Q Consensus 879 ~~~~iP~ef~cPI~~~ 894 (981)
.+.++|++|.||+++.
T Consensus 29 ~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 29 DFKDIPDDWVCPLCGV 44 (54)
T ss_dssp CGGGSCTTCBCTTTCC
T ss_pred ChhHCCCCCcCcCCCC
Confidence 3568999999999874
Done!