Query 002018
Match_columns 980
No_of_seqs 591 out of 2956
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 14:39:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002018.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002018hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2082 K+/Cl- cotransporter K 100.0 3E-162 7E-167 1348.9 60.8 850 118-980 99-1075(1075)
2 TIGR00930 2a30 K-Cl cotranspor 100.0 1E-151 3E-156 1401.7 87.6 812 124-980 69-953 (953)
3 KOG1288 Amino acid transporter 100.0 3E-124 7E-129 1038.5 49.8 792 132-972 66-938 (945)
4 KOG2083 Na+/K+ symporter [Inor 100.0 9.2E-83 2E-87 708.1 34.3 595 127-769 24-634 (643)
5 COG0833 LysP Amino acid transp 100.0 5.3E-64 1.2E-68 562.4 28.0 427 118-597 41-503 (541)
6 KOG1286 Amino acid transporter 100.0 1.5E-52 3.3E-57 488.9 32.8 437 117-597 26-500 (554)
7 COG1113 AnsP Gamma-aminobutyra 100.0 2.2E-49 4.7E-54 436.2 26.7 421 117-591 9-452 (462)
8 PRK15049 L-asparagine permease 100.0 3.8E-46 8.3E-51 441.2 41.0 400 118-569 25-440 (499)
9 PRK10746 putative transport pr 100.0 2.2E-46 4.8E-51 439.7 35.5 420 117-590 6-450 (461)
10 PRK10836 lysine transporter; P 100.0 3.1E-45 6.8E-50 434.0 36.7 401 116-569 10-435 (489)
11 PRK10249 phenylalanine transpo 100.0 7.5E-45 1.6E-49 427.0 38.0 397 117-568 17-427 (458)
12 PRK10238 aromatic amino acid t 100.0 5E-45 1.1E-49 428.2 35.7 399 117-570 8-420 (456)
13 TIGR00906 2A0303 cationic amin 100.0 2E-44 4.2E-49 430.4 38.0 433 118-593 25-555 (557)
14 PRK10197 gamma-aminobutyrate t 100.0 3.2E-44 6.9E-49 420.3 38.4 380 145-568 5-400 (446)
15 PRK11387 S-methylmethionine tr 100.0 2.2E-44 4.8E-49 425.1 37.4 400 118-568 11-427 (471)
16 PF00324 AA_permease: Amino ac 100.0 5.2E-46 1.1E-50 440.4 16.0 452 139-631 2-477 (478)
17 TIGR00913 2A0310 amino acid pe 100.0 1.3E-43 2.9E-48 420.0 36.2 426 121-597 2-469 (478)
18 KOG1287 Amino acid transporter 100.0 1.3E-42 2.8E-47 389.6 35.9 423 129-597 10-448 (479)
19 TIGR01773 GABAperm gamma-amino 100.0 7.7E-43 1.7E-47 410.5 35.1 397 117-568 8-420 (452)
20 TIGR00908 2A0305 ethanolamine 100.0 2.2E-42 4.7E-47 405.7 38.2 411 118-588 4-429 (442)
21 PRK10580 proY putative proline 100.0 2.2E-42 4.8E-47 406.8 36.5 417 117-587 5-445 (457)
22 PRK10644 arginine:agmatin anti 100.0 1E-41 2.2E-46 400.0 38.0 406 131-590 8-429 (445)
23 PRK11049 D-alanine/D-serine/gl 100.0 8.1E-42 1.8E-46 402.8 37.3 397 117-566 16-429 (469)
24 TIGR00911 2A0308 L-type amino 100.0 1.9E-41 4.2E-46 403.3 40.0 415 117-587 38-468 (501)
25 PRK10655 potE putrescine trans 100.0 1E-41 2.3E-46 399.4 36.3 413 131-595 6-434 (438)
26 PRK10435 cadB lysine/cadaverin 100.0 1.1E-41 2.5E-46 398.0 36.0 408 131-595 5-430 (435)
27 PRK11357 frlA putative fructos 100.0 1.3E-41 2.8E-46 399.3 35.7 415 118-592 5-438 (445)
28 TIGR00905 2A0302 transporter, 100.0 4.3E-41 9.4E-46 397.3 38.1 416 131-592 7-439 (473)
29 PRK11021 putative transporter; 100.0 2.2E-40 4.7E-45 384.8 38.2 374 144-582 11-395 (410)
30 TIGR00909 2A0306 amino acid tr 100.0 1.4E-39 3E-44 380.8 37.1 413 131-587 3-428 (429)
31 TIGR03810 arg_ornith_anti argi 100.0 1.9E-39 4E-44 382.9 36.8 412 132-587 2-429 (468)
32 TIGR00907 2A0304 amino acid pe 100.0 8.7E-38 1.9E-42 370.6 39.0 385 150-568 31-439 (482)
33 TIGR03428 ureacarb_perm permea 100.0 2.4E-37 5.1E-42 365.7 36.0 415 123-569 5-440 (475)
34 TIGR03813 put_Glu_GABA_T putat 100.0 1.5E-35 3.3E-40 350.3 37.5 371 160-568 25-419 (474)
35 KOG1289 Amino acid transporter 100.0 2.3E-36 5.1E-41 338.8 28.1 390 115-537 32-443 (550)
36 TIGR00910 2A0307_GadC glutamat 100.0 1.8E-34 3.8E-39 342.1 37.7 364 160-568 28-422 (507)
37 PRK15238 inner membrane transp 100.0 1.2E-34 2.7E-39 344.2 33.2 374 159-565 31-452 (496)
38 PF13520 AA_permease_2: Amino 100.0 3E-33 6.4E-38 327.2 33.9 372 146-567 13-401 (426)
39 COG0531 PotE Amino acid transp 100.0 1E-32 2.3E-37 326.4 37.7 375 131-550 12-400 (466)
40 TIGR00837 araaP aromatic amino 99.9 1E-19 2.2E-24 209.7 29.7 346 145-552 8-370 (381)
41 TIGR00912 2A0309 spore germina 99.6 1.4E-12 2.9E-17 149.3 31.3 270 144-469 13-294 (359)
42 TIGR00796 livcs branched-chain 99.6 4.4E-12 9.6E-17 143.3 32.4 333 148-551 9-366 (378)
43 PHA02764 hypothetical protein; 99.5 2.1E-12 4.6E-17 135.5 20.8 239 167-491 47-285 (399)
44 PF03222 Trp_Tyr_perm: Tryptop 99.3 1.5E-09 3.3E-14 124.7 32.6 267 156-468 24-302 (394)
45 TIGR00814 stp serine transport 99.2 4.1E-09 8.8E-14 121.0 27.3 282 144-471 13-311 (397)
46 COG0814 SdaC Amino acid permea 99.1 4.3E-08 9.4E-13 113.5 29.5 224 156-423 30-255 (415)
47 PRK15132 tyrosine transporter 99.1 1E-07 2.2E-12 109.3 31.5 266 156-470 24-301 (403)
48 PRK10483 tryptophan permease; 99.1 9.7E-08 2.1E-12 109.0 30.5 232 148-426 25-256 (414)
49 PRK09664 tryptophan permease T 99.0 2.9E-07 6.3E-12 105.1 30.7 234 149-426 24-257 (415)
50 PRK13629 threonine/serine tran 98.8 6.6E-06 1.4E-10 94.2 29.8 278 157-472 41-347 (443)
51 PF03845 Spore_permease: Spore 98.6 3.1E-05 6.8E-10 87.2 30.2 267 146-469 14-290 (320)
52 PTZ00206 amino acid transporte 98.3 0.00021 4.6E-09 84.6 27.0 235 147-415 73-310 (467)
53 PF01235 Na_Ala_symp: Sodium:a 98.2 0.00016 3.5E-09 82.5 22.2 296 122-471 18-338 (416)
54 KOG1303 Amino acid transporter 98.2 0.0014 3.1E-08 75.9 29.8 237 133-415 38-280 (437)
55 PLN03074 auxin influx permease 98.1 0.0023 5E-08 75.7 30.2 217 143-413 55-283 (473)
56 KOG1304 Amino acid transporter 97.8 0.0058 1.3E-07 70.0 25.0 160 205-412 131-293 (449)
57 PF01490 Aa_trans: Transmembra 97.8 1.5E-06 3.2E-11 101.3 -3.9 347 146-539 15-375 (409)
58 PRK11017 codB cytosine permeas 97.8 0.037 8.1E-07 64.4 32.4 118 163-310 39-157 (404)
59 COG1115 AlsT Na+/alanine sympo 97.8 0.0049 1.1E-07 69.9 23.2 306 121-474 61-385 (452)
60 PRK11375 allantoin permease; P 97.8 0.089 1.9E-06 62.6 35.1 131 164-309 58-194 (484)
61 TIGR00835 agcS amino acid carr 97.6 0.015 3.2E-07 67.2 25.3 300 123-471 47-365 (425)
62 COG1457 CodB Purine-cytosine p 97.6 0.1 2.2E-06 60.4 30.7 117 165-311 51-168 (442)
63 PF01566 Nramp: Natural resist 97.4 0.064 1.4E-06 61.4 26.9 247 170-471 17-285 (358)
64 PF05525 Branch_AA_trans: Bran 97.3 0.057 1.2E-06 62.4 24.9 270 197-525 61-345 (427)
65 PRK00701 manganese transport p 97.1 0.9 1.9E-05 53.4 33.5 59 184-242 79-138 (439)
66 COG1114 BrnQ Branched-chain am 97.0 0.71 1.5E-05 52.3 28.3 177 271-468 118-305 (431)
67 PRK15433 branched-chain amino 96.8 0.47 1E-05 55.0 26.1 175 274-470 123-309 (439)
68 PF02705 K_trans: K+ potassium 96.8 0.24 5.1E-06 58.6 23.6 254 224-529 106-368 (534)
69 TIGR02358 thia_cytX probable h 96.5 2.4 5.2E-05 49.1 35.0 124 163-311 26-150 (386)
70 COG0733 Na+-dependent transpor 96.4 2 4.3E-05 49.6 26.6 244 134-412 9-264 (439)
71 COG3949 Uncharacterized membra 96.3 1.6 3.6E-05 48.0 24.5 53 168-222 38-90 (349)
72 COG0591 PutP Na+/proline sympo 96.1 2 4.2E-05 51.5 26.6 112 130-244 37-152 (493)
73 PRK09442 panF sodium/panthothe 96.1 4.8 0.0001 48.1 32.3 36 436-474 316-351 (483)
74 PRK10745 trkD potassium transp 95.8 2.5 5.5E-05 50.7 24.7 153 367-525 217-375 (622)
75 PLN00149 potassium transporter 95.7 4.5 9.7E-05 50.0 26.9 155 368-525 274-434 (779)
76 TIGR00794 kup potassium uptake 95.5 2.8 6.2E-05 51.1 24.1 153 367-525 243-401 (688)
77 PLN00150 potassium ion transpo 95.3 0.83 1.8E-05 56.0 18.7 152 368-525 290-447 (779)
78 PLN00148 potassium transporter 95.2 4.5 9.7E-05 49.9 24.5 150 368-523 273-428 (785)
79 TIGR00800 ncs1 NCS1 nucleoside 95.2 9.1 0.0002 45.2 30.3 74 164-241 45-119 (442)
80 TIGR02119 panF sodium/pantothe 94.9 11 0.00024 44.9 31.8 85 384-473 258-349 (471)
81 PLN00151 potassium transporter 94.8 3.8 8.2E-05 50.6 22.3 152 368-525 350-507 (852)
82 PF13906 AA_permease_C: C-term 94.4 0.13 2.7E-06 40.8 5.8 46 547-592 1-50 (51)
83 TIGR02121 Na_Pro_sym sodium/pr 94.2 16 0.00035 43.6 33.6 34 438-474 317-350 (487)
84 PRK15419 proline:sodium sympor 93.7 20 0.00044 43.0 32.4 35 437-474 323-357 (502)
85 COG3158 Kup K+ transporter [In 92.6 5.2 0.00011 47.1 17.3 151 368-525 223-380 (627)
86 KOG2082 K+/Cl- cotransporter K 91.6 0.053 1.2E-06 64.3 0.1 60 918-979 943-1002(1075)
87 KOG1305 Amino acid transporter 91.3 34 0.00073 39.9 22.5 54 362-415 194-248 (411)
88 PF00474 SSF: Sodium:solute sy 91.1 11 0.00024 43.8 18.8 39 436-477 289-327 (406)
89 COG1914 MntH Mn2+ and Fe2+ tra 91.1 36 0.00077 39.7 33.6 95 196-318 75-169 (416)
90 TIGR02711 symport_actP cation/ 89.8 55 0.0012 39.8 30.2 29 442-473 357-385 (549)
91 TIGR00813 sss transporter, SSS 89.5 48 0.001 38.6 28.8 46 198-243 66-112 (407)
92 PF00209 SNF: Sodium:neurotran 86.7 82 0.0018 38.1 22.7 111 363-474 250-377 (523)
93 cd01987 USP_OKCHK USP domain i 86.7 8 0.00017 36.3 11.1 94 630-737 2-95 (124)
94 COG4147 DhlC Predicted symport 84.9 87 0.0019 36.7 23.1 45 364-412 236-286 (529)
95 TIGR03648 Na_symport_lg probab 83.4 1.2E+02 0.0025 37.0 33.6 44 199-242 96-140 (552)
96 PRK10484 putative transporter; 83.1 1.2E+02 0.0025 36.8 34.3 35 436-473 324-358 (523)
97 PF02133 Transp_cyt_pur: Perme 81.2 1.2E+02 0.0026 35.6 21.6 77 164-244 40-117 (440)
98 cd00293 USP_Like Usp: Universa 75.3 35 0.00076 31.4 11.0 86 646-737 11-103 (130)
99 cd01988 Na_H_Antiporter_C The 74.0 44 0.00094 31.3 11.4 97 630-738 2-105 (132)
100 COG1953 FUI1 Cytosine/uracil/t 71.5 2.2E+02 0.0048 33.8 29.4 37 275-311 172-209 (497)
101 KOG4303 Vesicular inhibitory a 71.1 42 0.00092 37.3 11.2 134 154-309 136-275 (524)
102 PF04531 Phage_holin_1: Bacter 65.0 25 0.00054 31.1 6.7 66 542-607 3-80 (84)
103 PRK12488 acetate permease; Pro 64.4 3.3E+02 0.0072 33.1 36.1 40 203-242 135-175 (549)
104 PF02028 BCCT: BCCT family tra 61.3 3.5E+02 0.0076 32.3 26.2 90 438-537 388-483 (485)
105 PRK09395 actP acetate permease 54.4 4.8E+02 0.01 31.7 37.0 40 203-242 137-177 (551)
106 PF00582 Usp: Universal stress 52.0 1.9E+02 0.0042 26.5 12.4 97 629-737 4-112 (140)
107 PRK09950 putative transporter; 44.5 6.4E+02 0.014 30.3 24.8 96 438-537 398-497 (506)
108 TIGR00796 livcs branched-chain 42.9 3.2E+02 0.0069 31.5 12.9 71 202-297 259-329 (378)
109 PF05297 Herpes_LMP1: Herpesvi 41.2 8.9 0.00019 41.0 0.0 15 486-500 17-31 (381)
110 COG4025 Predicted membrane pro 40.7 2.1E+02 0.0045 30.2 9.5 17 462-478 55-71 (284)
111 cd01989 STK_N The N-terminal d 39.3 3.4E+02 0.0075 25.8 11.1 27 647-673 12-38 (146)
112 PF05525 Branch_AA_trans: Bran 37.4 2.3E+02 0.005 33.2 10.7 73 202-299 265-337 (427)
113 PRK15433 branched-chain amino 36.0 3.1E+02 0.0068 32.2 11.4 72 202-299 269-340 (439)
114 PRK01021 lpxB lipid-A-disaccha 31.1 8.4E+02 0.018 30.0 14.2 38 685-723 298-335 (608)
115 PF11028 DUF2723: Protein of u 29.8 6.2E+02 0.013 25.8 14.0 24 487-510 74-97 (178)
116 TIGR01197 nramp NRAMP (natural 29.3 9.4E+02 0.02 27.8 30.3 36 435-470 289-324 (390)
117 PTZ00206 amino acid transporte 28.8 1E+03 0.023 28.1 16.0 46 432-477 127-172 (467)
118 PF14256 YwiC: YwiC-like prote 27.5 3.6E+02 0.0079 25.9 8.5 11 586-596 98-108 (129)
119 PRK15005 universal stress prot 26.2 5.6E+02 0.012 24.2 11.4 95 629-734 4-114 (144)
120 PRK10929 putative mechanosensi 25.7 6.8E+02 0.015 33.2 13.0 28 814-841 992-1019(1109)
121 PRK09928 choline transport pro 25.6 1.4E+03 0.03 28.6 26.1 72 438-513 405-476 (679)
122 COG0798 ACR3 Arsenite efflux p 25.0 1E+03 0.022 26.9 12.3 50 539-588 203-259 (342)
123 PRK11175 universal stress prot 24.5 4.5E+02 0.0098 28.7 10.2 110 649-769 174-299 (305)
124 PRK00968 tetrahydromethanopter 24.5 2.1E+02 0.0045 29.8 6.4 52 366-417 182-237 (240)
125 KOG4812 Golgi-associated prote 24.0 9E+02 0.019 25.9 10.9 70 169-240 175-246 (262)
126 KOG2466 Uridine permease/thiam 23.6 1.3E+03 0.028 27.5 14.8 35 441-479 344-378 (572)
127 COG5546 Small integral membran 23.5 1.4E+02 0.0031 25.5 4.1 66 542-607 3-75 (80)
128 PF11174 DUF2970: Protein of u 22.0 1.4E+02 0.003 24.3 3.7 45 365-412 2-46 (56)
129 PRK15118 universal stress glob 21.7 6.9E+02 0.015 23.6 10.7 122 629-770 5-139 (144)
130 COG1292 BetT Choline-glycine b 21.6 1.5E+03 0.032 27.4 22.0 37 438-474 401-437 (537)
131 COG4145 PanF Na+/panthothenate 21.3 1.3E+03 0.028 26.6 16.3 38 206-243 115-152 (473)
132 PRK09982 universal stress prot 20.7 7.4E+02 0.016 23.6 11.0 122 629-770 5-139 (142)
133 PRK11281 hypothetical protein; 20.5 8.8E+02 0.019 32.3 12.6 23 819-841 1000-1022(1113)
134 COG4060 MtrD Tetrahydromethano 20.5 2.2E+02 0.0049 28.4 5.5 54 364-417 170-227 (230)
135 PF11654 DUF2665: Protein of u 20.4 79 0.0017 24.6 2.0 18 202-219 1-18 (47)
No 1
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.2e-162 Score=1348.86 Aligned_cols=850 Identities=44% Similarity=0.787 Sum_probs=746.7
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~ 197 (980)
+-+..-+.++....++|+++|||+||++||+|+++|+|+.|++|.||.+..+++.++|++++++|++|++++||||...+
T Consensus 99 ~~~~~~g~~~~~a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpa 178 (1075)
T KOG2082|consen 99 EAEEHEGRRPAKAARMGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPA 178 (1075)
T ss_pred hcccccCCCCCCccccceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 33344456778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK-AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 198 GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~-~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
||.|+++||++||+||.++|.+||++++++.|||++|.+|.++. .+|.+.+++..-. .....+..++.+++
T Consensus 179 GGsYfmISRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a--------~~~~~am~nnlRvY 250 (1075)
T KOG2082|consen 179 GGSYFMISRSLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDA--------HDEAAAMLNNLRVY 250 (1075)
T ss_pred CCeeEEEecccCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCcccc--------ccchhhhhcceehH
Confidence 99999999999999999999999999999999999999999876 6888877642211 11124567889999
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCC-------------------------------
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDP------------------------------- 325 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~------------------------------- 325 (980)
+++++++.++|.+.|||+..++..++..|++++|+.+++|.+....+.+
T Consensus 251 GT~~Li~m~lIVf~GVK~Vnk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~ 330 (1075)
T KOG2082|consen 251 GTVFLILMALIVFVGVKFVNKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNV 330 (1075)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccH
Confidence 9999999999999999999999999999999999998888765332211
Q ss_pred -----------------------------CCCcccccccccccccCcccccCCC--------CCCCCC------CCCchh
Q 002018 326 -----------------------------APGITGLKLKTFKDNWFSDYQKTNN--------AGIPDP------NGAVDW 362 (980)
Q Consensus 326 -----------------------------~~~~~g~~~~~~~~n~~~~f~~~~~--------~g~~~~------~g~~~~ 362 (980)
-.|+.|+...++.+|++|.|...+. .+++.. .++..+
T Consensus 331 ~~~L~~~fC~~~~~~~~c~~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~t 410 (1075)
T KOG2082|consen 331 TSFLWGLFCNSNNDSATCDEYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITT 410 (1075)
T ss_pred HHHHHHhhCCCCCCCcccccccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchh
Confidence 1278899999999999998843331 112221 234467
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccc----hhhh---hhhhhhHhh
Q 002018 363 SFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT----REEL---LTDRLLTAT 435 (980)
Q Consensus 363 ~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~----~~~~---~~~~~~~~~ 435 (980)
+|....+++|||+||+++++|+||++|||+|+||.|++.+++.+..+|+.+++++|.++. +|.. ..+.++.+.
T Consensus 411 SFtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~ 490 (1075)
T KOG2082|consen 411 SFTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVAT 490 (1075)
T ss_pred hHHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEE
Confidence 899999999999999999999999999999999999999999999999999999999987 5554 455678889
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeec-CCCCCchhhHHHHHHHHhhhhccccccchh
Q 002018 436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV-AEGREPHIATFFTAFICIGCVIIGNLDLIT 514 (980)
Q Consensus 436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~-~~~g~P~~Aill~~~i~~l~~l~~~~~~l~ 514 (980)
.+||.||++.+|.++|+++++++++.++||+|||+|||+++|.+..|++ .++|+|.+|+++|.+||.+.+++++++.++
T Consensus 491 laWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~~ngEPt~aLlLT~~Ice~gILigslD~iA 570 (1075)
T KOG2082|consen 491 LAWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGKANGEPTWALLLTAIICECGILIGSLDLIA 570 (1075)
T ss_pred ecCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhccccCCCCccHHHHHHHHHHHhhheeechhHHH
Confidence 9999999999999999999999999999999999999999999877755 457999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeCCC
Q 002018 515 PTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKA 594 (980)
Q Consensus 515 ~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~l~i~~~l~~~~~~~~~~ 594 (980)
++.++|||+||.++|++|.+....+.|+|||+|||+||.++++|+.+|+++||+.+|.++++++.++.++|.|+.||+.+
T Consensus 571 pilsmFFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm~~a~~IYKYiEykGAe 650 (1075)
T KOG2082|consen 571 PILSMFFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAMLIAGVIYKYIEYKGAE 650 (1075)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCcccCCceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCC
Q 002018 595 GDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGD 674 (980)
Q Consensus 595 ~~wG~~~~~~~~~~~~~~l~~l~~~~~h~k~~rP~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~ 674 (980)
|+|||+.+++.++.||++|+++++.++|+||||||+||+++. .++..+++++|++|++|+| .|+|+.+++++++|+
T Consensus 651 KEWGDGiRGlsLtaArysLlrlEegpPH~KNWRPQlLVll~~---~~~~~vk~p~ll~~asqlK-aGkGltIv~s~l~G~ 726 (1075)
T KOG2082|consen 651 KEWGDGIRGLSLSAARYSLLRLEEGPPHPKNWRPQLLVLLRL---DEDIDVKHPRLLNFASQLK-AGKGLTIVGSVLQGT 726 (1075)
T ss_pred chhccchhhHHHHHHHHHHHhcccCCCCCCCCCceeeeeecc---cchhchhhhhHhhHHHHhh-cCCCeEEEEEeecCC
Confidence 999999999999999999999999999999999999999973 3455678999999999998 789999999999999
Q ss_pred CccchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHH
Q 002018 675 YHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGI 754 (980)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~ 754 (980)
+.+...++++++++++..++..|+|+|+++++++++++|+++++|+.|||+|||||++|+||+.||+++..+.+..|+++
T Consensus 727 ~~e~~~~a~~a~~t~~~~m~~~r~~Gf~q~vv~~~ir~g~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~ 806 (1075)
T KOG2082|consen 727 FLEDKGEAQRAEETIRTLMEAERVKGFAQTVVASNLREGISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIET 806 (1075)
T ss_pred chhhhHHHHHHHHHHHHHHhHHHhhhhhhhhcccchhhhhhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHH
Confidence 99888889999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHHHHhhcceEEEEecCCCCcccccccCCcceeEEEeeCChHHHHHHHHhccCcccCCceEEEEEEecCCchHHHHHHHH
Q 002018 755 INDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADV 834 (980)
Q Consensus 755 i~~~~~~~~~v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGgL~lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l 834 (980)
++++.+.++++++.||++.||.+.++..|+|||||++||||+++|+||||++|++||+||+|+|++++.+|+.++||+++
T Consensus 807 v~~~~a~~~al~v~K~i~~fP~~~er~~G~IDvwWIVhDGG~lmLl~~LL~qhkvwr~C~~rif~vaq~~dns~~mk~dl 886 (1075)
T KOG2082|consen 807 VRDTTAAHLALLVAKGIDDFPSNVERFSGHIDVWWIVHDGGMLMLLPFLLRQHKVWRKCKMRIFTVAQEDDNSIQMKKDL 886 (1075)
T ss_pred HHHhhccceeEEEecCcccCchhhhhhcCceeEEEEEecCchHHHHHHHHHHHHHHhhceeeEEEEeeccCcHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCcEEEEEecCCccccccC------CCCChhhHH---HHHHHHHhHh---hh--------------------
Q 002018 835 KKFLYDLRMQAEVIVISMKSWDEQTEN------GPQQDESLD---AFIAAQHRIK---NY-------------------- 882 (980)
Q Consensus 835 ~~ll~~~RI~a~v~vv~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~---~~-------------------- 882 (980)
+++|+++||+|||.||++.++|+++++ ++++.+..+ .+.+.+++.. ..
T Consensus 887 ~~flY~LRi~Aev~vVem~~~dis~~~~ertl~mE~rsq~~~~m~~~k~~~~r~~l~~d~~~~~~~~s~~s~~~~~~~~~ 966 (1075)
T KOG2082|consen 887 QKFLYHLRIDAEVEVVEMHDSDISAYTYERTLMMEQRSQMLRQMRLSKNERERAQLIHDRNAPRRPSSLHSDEARPFETA 966 (1075)
T ss_pred HHHHHhhcccceEEEEEecchhhhHHHHHHHHHHHhhHHHHHHHHhhhhhhhccccchhcCCccccccccccccccCCCC
Confidence 999999999999999999999987742 223333222 1221111100 00
Q ss_pred -------hhHhhHhhhhcCCC--CccCCCc--cccCHHHHHHHHHHHHHHHHHHHhcCCCccEEEEecCCCCCCC-Chhc
Q 002018 883 -------LAEMKAEAQKSGTP--LMADGKP--VVVNEQQVEKFLYTTLKLNSTILRHSRMAAVVLVSLPPPPINH-PAYC 950 (980)
Q Consensus 883 -------~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~lneli~~~S~~a~lv~~~LP~p~~~~-~~~~ 950 (980)
|...|..+ ...++ .+...++ ..-.++...++|||++||||+|++||+||+||++|||.||++. .+.+
T Consensus 967 ~~~~~~~~t~~k~~~-~~~~~~~~~~~~k~~~~~~~~~snv~~mhTavkLN~vi~~~S~~a~lvLlnlP~PP~n~~~~~~ 1045 (1075)
T KOG2082|consen 967 PTKVQMTWTRDKYMA-STSNPAFSLSGFKDLFSMKPDQSNVRRMHTAVKLNEVILNKSRDAQLVLLNLPGPPRNRQGDEN 1045 (1075)
T ss_pred CcceechhhhhhHHH-hccCCcchhccCCcccccChhhHHHHHHHHHHHHHHHHHhcCccccEEEecCcCCCCCCcchhh
Confidence 00000000 00000 1111111 1112344556799999999999999999999999999999986 5689
Q ss_pred HHHHHHHhhcCCCceEEEccCCceeeeecC
Q 002018 951 YMEYMDLLVENVPRLLIVRGYRRDVVTLFT 980 (980)
Q Consensus 951 Ym~~l~~lt~~l~p~llVrG~~~~v~t~ys 980 (980)
||+|||+||++|||||||||.|+||||+||
T Consensus 1046 Ymeylevlte~l~Rvl~VrG~greViTi~s 1075 (1075)
T KOG2082|consen 1046 YMEYLEVLTEGLPRVLLVRGGGREVITIYS 1075 (1075)
T ss_pred HHHHHHHHHcCCCeEEEEccCCceEEEecC
Confidence 999999999999999999999999999998
No 2
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=1.2e-151 Score=1401.75 Aligned_cols=812 Identities=42% Similarity=0.730 Sum_probs=712.5
Q ss_pred CCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhh
Q 002018 124 GPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYL 203 (980)
Q Consensus 124 ~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~ 203 (980)
+..+...+++|++.||++||++||+|+++|+|+||++|+||++.++++|++++++++++++||+|++|+++|++||.|+|
T Consensus 69 ~~~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~y 148 (953)
T TIGR00930 69 EKPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYL 148 (953)
T ss_pred CCCCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHH
Confidence 44455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHH
Q 002018 204 IGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTII 283 (980)
Q Consensus 204 ~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~ 283 (980)
++|++||++||++||++++++++++|++++++++|+...++..+. .+..+..++.++++++++++
T Consensus 149 isralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~---------------~~~~~~~~~~~iia~i~l~l 213 (953)
T TIGR00930 149 ISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS---------------KIMVDPINDIRIYGTVTVVV 213 (953)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---------------ccccCccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999988764211 01112234457899999999
Q ss_pred HHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhH
Q 002018 284 LCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWS 363 (980)
Q Consensus 284 ~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~ 363 (980)
++++|++|+|+++++|.+++++++++++.++++.+......+..++++++..++.+|+.|.+... ..+
T Consensus 214 l~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~------------~~~ 281 (953)
T TIGR00930 214 LLGISFAGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGP------------EGG 281 (953)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCc------------ccH
Confidence 99999999999999999999999999887777666544444445677777767777776654321 113
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh-------h--------
Q 002018 364 FNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL-------T-------- 428 (980)
Q Consensus 364 f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~-------~-------- 428 (980)
|+.+++++||||+|+|+++++|||+|||+|+||||++.++++++++|++..++++.+++++... .
T Consensus 282 f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f 361 (953)
T TIGR00930 282 FFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACF 361 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhh
Confidence 8889999999999999999999999999999999999999999999999888888888765421 1
Q ss_pred -------------hhhhHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccc-eeecC-CCCCchhh
Q 002018 429 -------------DRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLN-YFKVA-EGREPHIA 493 (980)
Q Consensus 429 -------------~~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~-~~~~~-~~g~P~~A 493 (980)
+.+......+++++++.++++++++++++++++++||++|+|||||++|++. +.+.+ |+++|++|
T Consensus 362 ~~~~~~p~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~A 441 (953)
T TIGR00930 362 SECAHNTCSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRA 441 (953)
T ss_pred hhhcccchhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHH
Confidence 0111112234467899999999999999999999999999999999999532 44544 67999999
Q ss_pred HHHHHHHHhhhhccccccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHH
Q 002018 494 TFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSF 573 (980)
Q Consensus 494 ill~~~i~~l~~l~~~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~ 573 (980)
++++++++++++++++++.++++++++++++|+++|++++++++.+.|+|||.||+++||++++|+++|+++||.++|.+
T Consensus 442 lllt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i~w~~ 521 (953)
T TIGR00930 442 YLLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLISWWA 521 (953)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhheeeeeCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCcccCCceEEeeCCCCCCCCCCCCchhhhhh
Q 002018 574 TVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADF 653 (980)
Q Consensus 574 ~~~~l~i~~~l~~~~~~~~~~~~wG~~~~~~~~~~~~~~l~~l~~~~~h~k~~rP~ilv~~~~~~~~~~~~~~~~~L~~f 653 (980)
+++++++++++|+|+.||+++++|||+.|++.|+++|+++++|+.+++|+||||||+||+++++ +++++|++|
T Consensus 522 ali~~~i~~~ly~~~~~~~~~~~wg~~~~~~~~~~a~~~ll~l~~~~~h~knwrPqiLvl~~~p-------~~~~~Ll~f 594 (953)
T TIGR00930 522 ALVAMVIALFLYKYVTYKKPDVNWGSSTQALSYSLALYSLLRLEEVEDHVKNWRPQCLVLTGPP-------VCRPALLDF 594 (953)
T ss_pred HHHHHHHHHHHHHHhhccCCCCCcchHHHHHHHHHHHHHHHhccCCCCCccccCCeEEEEeCCC-------cCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999653 468899999
Q ss_pred HHHhhhCCCeeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEe
Q 002018 654 ANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVM 733 (980)
Q Consensus 654 a~~l~k~g~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~l 733 (980)
|++|| +|+|+++++||++|++++..++.++.++++++|++++|+|||+++++++|+++|+++++|++|||+||||||+|
T Consensus 595 ~~~l~-~~~gl~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~l 673 (953)
T TIGR00930 595 ASQFT-KGKGLMICGSVIQGPRLECVKEAQAAEAKIQTWLEKNKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVM 673 (953)
T ss_pred HHHhc-cCCcEEEEEEEecCchhhhHHHHHHHHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEe
Confidence 99998 56899999999999987777777778889999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccCCcchhHHHHHHHHHhhcceEEEEecCCCCccc------------------------------------
Q 002018 734 RYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNE------------------------------------ 777 (980)
Q Consensus 734 g~~~~w~~~~~~~~~~~~v~~i~~~~~~~~~v~i~r~~~~~p~~------------------------------------ 777 (980)
|||++|++++. +.+++|+++++||+++++||+|+|+++.+|.+
T Consensus 674 g~~~~w~~~~~-~~~~~y~~~i~~a~~~~~~v~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 752 (953)
T TIGR00930 674 GYKKDWRQAEP-RAWETYIGIIHDAFDAHLAVVVVRNSEGLPISVLQVQEELENDCSEDSIELNDGKISTQPDMHLEAST 752 (953)
T ss_pred cCccchhhccc-hhHHHHHHHHHHHHHcCCcEEEEcccccCCchhhccccccccccccccccccccccccccccchhhhh
Confidence 99999998764 45689999999999999999999998877744
Q ss_pred -c-ccc-CCcceeEEEeeCChHHHHHHHHhccCcccCCceEEEEEEecCCchHHHHHHHHHHHHHHcccCcEEEEEecCC
Q 002018 778 -Y-QRQ-YGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVISMKS 854 (980)
Q Consensus 778 -~-~~~-~g~IDvwW~~~dGgL~lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~RI~a~v~vv~~~~ 854 (980)
+ +++ +|||||||++|||||||||||||++|+.||+||||||++++++++.+++|++|++||++|||+||+++|++
T Consensus 753 ~~~~~~~~~~IDvwW~~~dggL~lll~~ll~~~~~W~~~kiRvf~~~~~~~~~~~~~~~~~~lL~~~RI~a~~~~v~~-- 830 (953)
T TIGR00930 753 QFQKKQGKGTIDVWWLVDDGGLTLLLPYLLTTKKVWKKCKIRIFVGAQKDDRSEQEKKDMATLLYKFRIDAEVIVVLM-- 830 (953)
T ss_pred hhhccCCCceEEEEEecCCCcHHHHHHHHHhcCccccCceEEEEEEecCCchHHHHHHHHHHHHHHhCCCCEEEEEec--
Confidence 2 233 48999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccccccCCCCChhhHHHHHHHHHhHhhhhhHhhHhhhhcCCCCccCCCccccCHHH---HHHHHHHHHHHHHHHHhcCCC
Q 002018 855 WDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQ---VEKFLYTTLKLNSTILRHSRM 931 (980)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~lneli~~~S~~ 931 (980)
|+ +.+|++++.++|+++.++++...++++.. ..++.+..++|+.++|++ .+++++|++||||+|+|||++
T Consensus 831 -di---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rlneli~~~S~~ 903 (953)
T TIGR00930 831 -DI---NAKPQTESMEAFEEMIRPFRLHKTEKDRE---AKDPKMTWTKPWKITDAELQSNVRKSYRQVRLNELLLEYSRD 903 (953)
T ss_pred -cC---CCCcchhHHHHHHHHHhhhhhcccccccc---cccccccccCCccccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33 23489999999988765544432222111 123455667788888754 445579999999999999999
Q ss_pred ccEEEEecCCCCCC-CChhcHHHHHHHhhcCCCceEEEccCCceeeeecC
Q 002018 932 AAVVLVSLPPPPIN-HPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLFT 980 (980)
Q Consensus 932 a~lv~~~LP~p~~~-~~~~~Ym~~l~~lt~~l~p~llVrG~~~~v~t~ys 980 (980)
|+||++|||+||++ +++.+||+|||+||++|||+|||||||+|||||||
T Consensus 904 a~lv~~~lp~p~~~~~~~~~Ym~~l~~lt~~l~p~llvrGn~~~vlt~~s 953 (953)
T TIGR00930 904 AALVVLSLPVPRKGSISDELYMAWLEVLSEDLPPVLLVRGNHRNVLTFYS 953 (953)
T ss_pred CcEEEEeCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEecCCceeeeecC
Confidence 99999999999998 78899999999999999999999999999999998
No 3
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-124 Score=1038.55 Aligned_cols=792 Identities=29% Similarity=0.481 Sum_probs=662.5
Q ss_pred cccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCch
Q 002018 132 KLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPE 211 (980)
Q Consensus 132 ~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~ 211 (980)
++||+.|||+|+.+||+.+.+|+|+||++|++|...+++..+++..+.++|.+|+++++|||..++||+|+++||++||+
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGpE 145 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGPE 145 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhh
Q 002018 212 VGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGG 291 (980)
Q Consensus 212 ~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~G 291 (980)
+|+++|.+|++++++.+++++.|++|.+.+.++..+- |....+.+ +...|+..++++.++.+++.+++.|
T Consensus 146 fGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~---------g~sg~~~l-P~g~ww~fly~t~vl~l~~~vc~lG 215 (945)
T KOG1288|consen 146 FGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQ---------GASGSQFL-PDGYWWRFLYTTLVLALCLIVCLLG 215 (945)
T ss_pred cCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCcccc---------CCcccccC-CCCcchhhHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999874321 10011122 3345666789999999999999999
Q ss_pred hhHHHHHhhHHHHHHHHHHHHhhheeeecCC-CCC--------------CCCcccccccccccccCcccccCCCCCCCCC
Q 002018 292 VKIINRVAPTFLIPVLLSIFCIFVGILLASK-DDP--------------APGITGLKLKTFKDNWFSDYQKTNNAGIPDP 356 (980)
Q Consensus 292 vk~~~~~~~~~~~~~il~i~~iiig~~~~~~-~~~--------------~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~ 356 (980)
...++|+.++..++..+++..+.+++++..+ ..+ ...|+|+++.++.+|+.++|..+...
T Consensus 216 salfAkas~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~----- 290 (945)
T KOG1288|consen 216 SALFAKASNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTG----- 290 (945)
T ss_pred HHHHHhhhhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccC-----
Confidence 9999999999998888888877776554332 111 23589999999999999998765422
Q ss_pred CCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhh-hHhh
Q 002018 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRL-LTAT 435 (980)
Q Consensus 357 ~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~~~-~~~~ 435 (980)
....+|...|+++|++.+|++++|+||||+|+|+|+||||++.++..+++.|++.++++++.+|+..+.++.. ....
T Consensus 291 --~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~i 368 (945)
T KOG1288|consen 291 --GGYEDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHI 368 (945)
T ss_pred --CCceehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeec
Confidence 2345799999999999999999999999999999999999999999999999999999999999998887743 3344
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeec--CCCCCchhhHHHHHHHHhhhhccccccch
Q 002018 436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKV--AEGREPHIATFFTAFICIGCVIIGNLDLI 513 (980)
Q Consensus 436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~--~~~g~P~~Aill~~~i~~l~~l~~~~~~l 513 (980)
..| ++++.+||+.+++++.++.+.++||+|.|+|||+++|.+.++.+ ...|.|+.|+++++++..++++.|++|.|
T Consensus 369 sl~--p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~i 446 (945)
T KOG1288|consen 369 SLH--PPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKI 446 (945)
T ss_pred ccc--chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHH
Confidence 445 48999999999999999999999999999999999998755543 35699999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeCC
Q 002018 514 TPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGK 593 (980)
Q Consensus 514 ~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~l~i~~~l~~~~~~~~~ 593 (980)
+.+++++|+++|+.+|++|+.++....|++||.|||++|..+++|++.|+.+||+++...+.+.+.+.+++..+++++.+
T Consensus 447 A~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvVd~~~A~~~~l~~~iLv~~lh~~~p 526 (945)
T KOG1288|consen 447 ASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVVDRINASISFLLMGILVVVLHYFSP 526 (945)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhheecchhhhHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888888889999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHhcCCCCCCCcccCCceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecC
Q 002018 594 AGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDG 673 (980)
Q Consensus 594 ~~~wG~~~~~~~~~~~~~~l~~l~~~~~h~k~~rP~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~ 673 (980)
.++|||+.|++.|||+||||++|+.++||+|+||||+|++++. +++..+|+||||+|||+|. -+.+||..|
T Consensus 527 p~swG~VSQaLiyHQVRKYLL~ld~rkdhVKfWRPQILLlV~n-------Prss~~Lirf~N~LKKggL--YilGHV~~g 597 (945)
T KOG1288|consen 527 PKSWGDVSQALIYHQVRKYLLRLDVRKDHVKFWRPQILLLVSN-------PRSSCNLIRFCNDLKKGGL--YILGHVIVG 597 (945)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhhhhcccccceEEEEecC-------CcccchHHHHHHhhcccce--EEEEEEEec
Confidence 9999999999999999999999999999999999999999964 2356689999999998765 568899877
Q ss_pred CCcc-chHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCccccc-----ccc----
Q 002018 674 DYHE-CAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWR-----REN---- 743 (980)
Q Consensus 674 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~-----~~~---- 743 (980)
|... ..++.++.++.|..++++.++|||+|++.++|+|+|+||++..+|||+|||||+++||.+... +++
T Consensus 598 d~~~~~~d~l~~q~~~W~s~vd~~~iKAFvelt~spsir~Giq~Lir~SGLGgMKPNt~VlgF~d~~~pq~~~q~~~~~s 677 (945)
T KOG1288|consen 598 DDFSASMDELQQQQRAWLSFVDDAGIKAFVELTISPSIRWGIQHLIRLSGLGGMKPNTAVLGFYDLEPPQDRFQNGLQKS 677 (945)
T ss_pred cccccccchhhHHHHHHHHHHHHhhhhhheeeccChhHHHHHHHHhhhcccCCcCCceEEEEeecCCCchhhhhcCcccc
Confidence 6443 345666777889999999999999999999999999999999999999999999999965211 000
Q ss_pred --------------------------cCCcchhHHHHHHHHHhhcceEEEEecCCCCcccccc----cCCcceeEEEe--
Q 002018 744 --------------------------LTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQR----QYGTIDLYWIV-- 791 (980)
Q Consensus 744 --------------------------~~~~~~~~v~~i~~~~~~~~~v~i~r~~~~~p~~~~~----~~g~IDvwW~~-- 791 (980)
.+..|.+||++++|++.|+||||++||++..+.+..+ ++++||||.+.
T Consensus 678 ~~s~~~r~~~se~~s~~~P~~~~g~~~~~~pq~yVqil~D~l~m~kNv~var~f~~L~~~~~~r~~~~kkyIDvwPi~l~ 757 (945)
T KOG1288|consen 678 SFSKEDRSEESESDSNPFPTRKDGNEHDLNPQDYVQILEDMLVMSKNVCVARGFDRLDKPKLSRSCGQKKYIDVWPINLI 757 (945)
T ss_pred ccccCCccccccccccCCCcccCCChhhCCHHHHHHHHHHHHhcccceeeecccccCChhhhhcccCCceeEEeeeeecc
Confidence 0124679999999999999999999999987654433 35799999984
Q ss_pred ----------eCC-hHHHHHHHHhccCcccCC-ceEEEEEEecCCch-HHHHHHHHHHHHHHcccCcEEEEEecCCcccc
Q 002018 792 ----------RDG-GLMLLLSQLLLTKESFES-CKIQVFCIAEEDSD-AEVLKADVKKFLYDLRMQAEVIVISMKSWDEQ 858 (980)
Q Consensus 792 ----------~dG-gL~lll~~lL~~~~~W~~-~klRvf~~~~~~~~-~~~~~~~l~~ll~~~RI~a~v~vv~~~~~~~~ 858 (980)
|+. -++|||++||.+.+.||+ ||||||.|++.+++ -+.+++.|+++|+.+||+|||.|++.......
T Consensus 758 ~p~~~~~~~~d~t~lfllQLa~IL~m~~~Wk~~~~LRvflcv~~~~~~~~~E~q~m~~mlq~lRI~aev~vv~~~~~~~~ 837 (945)
T KOG1288|consen 758 SPVGGEPGENDETYLFLLQLAWILHMVSDWKSGRRLRVFLCVEFEEREGTAERQSMKQMLQTLRIEAEVVVVCLDAMNVD 837 (945)
T ss_pred ccCCCCCCcchhHHHHHHHHHHHHHhhHHhhccceEEEEEEecchhhhhhhhHHHHHHHHHHheecceEEEEEeeceeee
Confidence 111 268999999999999986 67999999988774 44555569999999999999999975432211
Q ss_pred ccCCCCChhhHHHHHHHHHhHhhhhhHhhHhhhhcCCCCccCCCccccCHHHHHHH----HHHHHHHHHHHHhcCCCccE
Q 002018 859 TENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKF----LYTTLKLNSTILRHSRMAAV 934 (980)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~lneli~~~S~~a~l 934 (980)
.+ .++..-.|+..- +.+.. +.++.. . -.+.|++.. +...-+.||+.+++|.++++
T Consensus 838 ~~----e~~~~~df~~~~---r~~~~--~a~~~~-------~-----s~~~~v~~~~~rs~~y~s~~~e~~~~~~~~Tal 896 (945)
T KOG1288|consen 838 AQ----EKGDPIDFDYVD---RRYTA--KAEAVA-------P-----SASPEVEALFTRSLKYDSGWQEEGKRRGMNTAL 896 (945)
T ss_pred ee----eccCCccccccc---cccCc--cccccc-------C-----CCChhhhccccccccccccchhhhhhcCccccc
Confidence 11 111111232110 01100 000000 0 001122211 12346889999999999999
Q ss_pred EEEecCCCCCC--CC--hhcHHHHHHHhhcCCCceEEEccCC
Q 002018 935 VLVSLPPPPIN--HP--AYCYMEYMDLLVENVPRLLIVRGYR 972 (980)
Q Consensus 935 v~~~LP~p~~~--~~--~~~Ym~~l~~lt~~l~p~llVrG~~ 972 (980)
-+++||.||+. .+ ...||+-++.||.+|||+|+|||-.
T Consensus 897 s~~~l~~Pp~~sd~d~r~~sy~~~~~~lT~~L~ptLlvhgvt 938 (945)
T KOG1288|consen 897 SLLYLPFPPRMSDPDFRSASYLELLPPLTVDLGPTLLVHGVT 938 (945)
T ss_pred cccccCCCccccCcccccHHHHHhhhhhcccCCCceeecccc
Confidence 99999999974 22 4789999999999999999999974
No 4
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.2e-83 Score=708.14 Aligned_cols=595 Identities=32% Similarity=0.576 Sum_probs=537.6
Q ss_pred CCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHH
Q 002018 127 KPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR 206 (980)
Q Consensus 127 ~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr 206 (980)
.....++||+.|||+.|++||||+++|+|+||++|+||.+.++++.+++.+++.+|++|.+.+++++..++||.|++++|
T Consensus 24 ~~~~v~fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~ 103 (643)
T KOG2083|consen 24 TKGPVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISR 103 (643)
T ss_pred cCCceEEeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEe
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHH
Q 002018 207 ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCF 286 (980)
Q Consensus 207 ~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~ 286 (980)
++||+||+++|.+|.+++++++|++++||+|.+.+.+...+. +..+-++++.++++..
T Consensus 104 slg~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~----------------------~~i~gi~~vt~~ill~ 161 (643)
T KOG2083|consen 104 SLGPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK----------------------EMIDGIGSVTVLILLA 161 (643)
T ss_pred cccccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH----------------------HHhcchhHHHHHHHHH
Confidence 999999999999999999999999999999999998765421 2223478888889999
Q ss_pred HHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHH
Q 002018 287 IVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNA 366 (980)
Q Consensus 287 in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~ 366 (980)
||..|++|..|+|.++.++.++++.-+++|.++... .-..++.|++...+.+|+.|+|.+. .+|++
T Consensus 162 i~~ag~~w~~k~q~~ll~il~iai~~f~~gs~~~~~-~~~~g~~~~~a~~~~~n~~~~~~~~-------------~tfF~ 227 (643)
T KOG2083|consen 162 INVAGVEWEAKLQIVLLLILLIAIADFLVGSFFSPN-EFSSGFFGYRADIFVENLNPDIDPG-------------YTFFS 227 (643)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHhhhhhccChh-hhcccccccchhhcccCCCCCcCCC-------------CceEe
Confidence 999999999999999999999999988888766544 4455888999999999998888743 25899
Q ss_pred HHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhh--------------hh
Q 002018 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDR--------------LL 432 (980)
Q Consensus 367 ~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~~--------------~~ 432 (980)
+|+++||++||+.+++|++|++|+|+++||+|++.++.+++.+|+..+...|.++.++.+.... +-
T Consensus 228 vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~q 307 (643)
T KOG2083|consen 228 VFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQ 307 (643)
T ss_pred eeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888777532110 00
Q ss_pred HhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceee--cCCCCCchhhHHHHHHHHhhhhccccc
Q 002018 433 TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFK--VAEGREPHIATFFTAFICIGCVIIGNL 510 (980)
Q Consensus 433 ~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~--~~~~g~P~~Aill~~~i~~l~~l~~~~ 510 (980)
.......+.+.+.+|++.+.++++.+++.++++++|+|++|...|.+.++. .+++..|.++.+++..++...+.+++.
T Consensus 308 v~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igel 387 (643)
T KOG2083|consen 308 VMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGEL 387 (643)
T ss_pred HHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEeccc
Confidence 001112245789999999999999999999999999999999999865553 356799999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeee
Q 002018 511 DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCL 590 (980)
Q Consensus 511 ~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~l~i~~~l~~~~~~ 590 (980)
|.++++++++++.+|+.+|.+|+..+....+.|||+|+++..|++++|++.|+.+||.+.|+++++......++|+|..+
T Consensus 388 n~iapiis~FfL~syAlinf~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImFli~w~aaLi~~~~~~~Ly~yv~~ 467 (643)
T KOG2083|consen 388 NIIAPIISNFFLLSYALINFSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMFLISWWAALITFSVLSALYLYVGR 467 (643)
T ss_pred ceeccchhhhhhhhhhccchhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCCchhHHHHHHHHHHHHHhcCCCCCCCcccCCceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEE
Q 002018 591 KGKAGDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSI 670 (980)
Q Consensus 591 ~~~~~~wG~~~~~~~~~~~~~~l~~l~~~~~h~k~~rP~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v 670 (980)
+++..+||+++|+..|..++.++..+++.++|+|++|||++++.+++. .++.+.+++++++| +.++++|+|+
T Consensus 468 ~~pdvnwGsStqa~sy~~al~~~~~l~sles~v~~~~pq~l~lsG~p~-------~r~~l~d~~~~~tr-~~~l~icg~v 539 (643)
T KOG2083|consen 468 RKPDVNWGSSTQASSYLNALSHSLQLNSLESHVKNIRPQVLLLSGDPA-------SRPALVDPDHSITR-NYSLSICGHV 539 (643)
T ss_pred cCCCCCcCchHHHHHHHHHHHhhccccchhhhhhhcCcceeeecCChh-------hcccccCcchhhhh-ccceeeecce
Confidence 999999999999999999999998888999999999999999998642 47789999999996 4789999999
Q ss_pred ecCCCccchHHHHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchh
Q 002018 671 LDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPAT 750 (980)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~ 750 (980)
..+++.....+..+..++...|++++++|+||..+.++++++|++.++|.. +||||++++||+++|++.++++. ++
T Consensus 540 ~~~p~~~~~~~~~~~~~~~~~wl~~~~v~aFy~~v~~~~~~~G~~~l~q~~---r~kpn~~~~g~k~~w~~~~~~~~-~~ 615 (643)
T KOG2083|consen 540 EPLPYSRSYKELLKIDKQINDWLRKRKVKAFYAAVANTDFREGAQILLQAG---RMKPNILVLGYKTNWEKASPEEI-SE 615 (643)
T ss_pred eccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhhhhHHHHHHHHh---cCCCcEEEEeeccchhhCChhhH-hH
Confidence 999877766677777788999999999999999999999999999999997 99999999999999999877665 88
Q ss_pred HHHHHHHHHhhcceEEEEe
Q 002018 751 FVGIINDCIVANKAVVIVK 769 (980)
Q Consensus 751 ~v~~i~~~~~~~~~v~i~r 769 (980)
|.+++||+++.+.+|++.|
T Consensus 616 y~~~~~~afd~~~~v~i~r 634 (643)
T KOG2083|consen 616 YYGLLHDAFDFQVGVIIFR 634 (643)
T ss_pred HHhhhhhhhccccceEEEE
Confidence 9999999999999999999
No 5
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-64 Score=562.43 Aligned_cols=427 Identities=16% Similarity=0.177 Sum_probs=368.0
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~ 197 (980)
+++|+++.||.+|+.+|+.+ |+|||++.|..+.+|||++++++|++.+++++++++|++||++. +|.+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~I-----------GTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~-~P~s 108 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAI-----------GTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVF-YPVS 108 (541)
T ss_pred hhhhhhhHHHHHHHHhcccc-----------ccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCC
Confidence 59999999999999999865 55678888999999999999999999999999999999999997 9999
Q ss_pred CchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHH
Q 002018 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYG 277 (980)
Q Consensus 198 GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~ 277 (980)
|++..|++|+++|.+||++||+||+.|++++|++.+++...+..++|.. .+..+|.
T Consensus 109 GsF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~------------------------v~~~~w~ 164 (541)
T COG0833 109 GSFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT------------------------VPPWIWI 164 (541)
T ss_pred CchhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC------------------------CChHHHH
Confidence 9999999999999999999999999999999999999988877776532 2335888
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCC
Q 002018 278 IIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDP 356 (980)
Q Consensus 278 ~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~ 356 (980)
++++++++++|++|+|.+||.|++++.+|+++++ ++++|++..+++.+.+++.|++++.-.. +
T Consensus 165 ~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg----------------~ 228 (541)
T COG0833 165 AIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPG----------------A 228 (541)
T ss_pred HHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCC----------------C
Confidence 9999999999999999999999999999999998 8888998888888888888876543211 1
Q ss_pred CCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhh----------
Q 002018 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL---------- 426 (980)
Q Consensus 357 ~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~---------- 426 (980)
..+.+.++++++..+.|+|.|.|.++..|+|.|||+|+||||++..++|+.++|+++++++|+++|++++
T Consensus 229 F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~ 308 (541)
T COG0833 229 FAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGV 308 (541)
T ss_pred CCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCc
Confidence 1123788999999999999999999999999999999999999999999999999999999999999873
Q ss_pred hhhhhhHhhc--c-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhh
Q 002018 427 LTDRLLTATI--A-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIG 503 (980)
Q Consensus 427 ~~~~~~~~~~--~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l 503 (980)
..+|++.+.. + ...++++|++|+++++|++|+++|++||+||+||+||.+|++ +.+++|+|+|++|++++.+++++
T Consensus 309 ~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~-f~~~~r~GvP~~al~vt~~fg~l 387 (541)
T COG0833 309 AASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKI-FAKVDRRGVPLVALLVTLLFGLL 387 (541)
T ss_pred cCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchH-HHhhCCCCCchHHHHHHHHHHHH
Confidence 2346654432 2 235899999999999999999999999999999999999997 88999999999999999999988
Q ss_pred hhccc------cccchhhhhHHHHHHHHHHHHHHHHHhhhcC----CCCCCCCCccc-hhhHHHHHHHHHHHHHHHHHHH
Q 002018 504 CVIIG------NLDLITPTITMFFLLCYSGVNLSCFLLDLLD----APSWRPRWKFH-HWSLSLLGSVFCIVIMFLISWS 572 (980)
Q Consensus 504 ~~l~~------~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~----~p~~r~~f~~~-~~~~~l~g~i~~~~~~~~~~~~ 572 (980)
.++.. .++|++++++++.+++|+.+|++|+++|++- ...-+-+||.+ .+|.+++|+++|+++++..+|.
T Consensus 388 afl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~ 467 (541)
T COG0833 388 AFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYV 467 (541)
T ss_pred HHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchh
Confidence 88753 3789999999999999999999999999952 11123456665 4688999999999988886543
Q ss_pred H-----------HHHHHHHHHHhhheeeeeCCCCCC
Q 002018 573 F-----------TVVSLALASLIYYYVCLKGKAGDW 597 (980)
Q Consensus 573 ~-----------~~~~l~i~~~l~~~~~~~~~~~~w 597 (980)
+ +..++.+++.+.+|+.||-.+|+|
T Consensus 468 af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k~~ 503 (541)
T COG0833 468 AFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKKTT 503 (541)
T ss_pred eeecCCccHHHHHHHHHHHHHHHHHHHHheeEeccc
Confidence 2 345666766666666776666654
No 6
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=488.88 Aligned_cols=437 Identities=16% Similarity=0.169 Sum_probs=353.9
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
++++|.++.+|.+++++|+.+|+ |+|+..|.++.++||++.++.|++++++++++++|++|+++. +|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGt-----------Gl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~-~P~ 93 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGT-----------GLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVR-FPV 93 (554)
T ss_pred chhhccCCcccEEEEEecceecc-----------ceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHhee-ccc
Confidence 47999999999999999987655 457777889999999999999999999999999999999998 999
Q ss_pred -cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHH
Q 002018 197 -GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQI 275 (980)
Q Consensus 197 -~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i 275 (980)
+||+|.|++|.+||.+||++||+|++.|+++.|+++.++..++..+.. .... ....+..+...
T Consensus 94 ~aGs~~~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~-~~~~---------------~~~~~~~~~~~ 157 (554)
T KOG1286|consen 94 SAGSFYTYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG-ASLI---------------GILVDTVNPGG 157 (554)
T ss_pred ccccceeeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-cccc---------------cccccCCCCCc
Confidence 599999999999999999999999999999999999999888777641 1000 00001111235
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCC--CcccccccccccccCcccccCCCCC
Q 002018 276 YGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAP--GITGLKLKTFKDNWFSDYQKTNNAG 352 (980)
Q Consensus 276 ~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~--~~~g~~~~~~~~n~~~~f~~~~~~g 352 (980)
+..++++++.++|++|++.+++++++..+.|++.++ ++++++++.+++.+.+ ++.|++++..... |.+.
T Consensus 158 ~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~----F~p~---- 229 (554)
T KOG1286|consen 158 WIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGA----FFPF---- 229 (554)
T ss_pred cHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCC----cCCC----
Confidence 567888899999999999999999999999999999 7888999888887766 7777655432111 2211
Q ss_pred CCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhh--hhh--
Q 002018 353 IPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREE--LLT-- 428 (980)
Q Consensus 353 ~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~--~~~-- 428 (980)
.+.+++++++.++|+|+|+|.++.++||+|||||+||+|++.++++++++|+++.+++++++|+++ +..
T Consensus 230 -------gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~ 302 (554)
T KOG1286|consen 230 -------GFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA 302 (554)
T ss_pred -------CcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC
Confidence 156799999999999999999999999999999999999999999999999999999999999988 432
Q ss_pred ---hhhhHhhcc---CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHh
Q 002018 429 ---DRLLTATIA---WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICI 502 (980)
Q Consensus 429 ---~~~~~~~~~---~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~ 502 (980)
+++..+... ...|+++++++++++++++|++++++||++++||+||++|++ +.+++|+|+|++|++++.++++
T Consensus 303 ~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~-f~~v~~~g~P~~a~~v~~~~~~ 381 (554)
T KOG1286|consen 303 ALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKF-FARVDRRGVPLVAVLVSGLFGA 381 (554)
T ss_pred ccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchH-HhhcCCCCCchhHHHHHHHHHH
Confidence 345433222 234679999999999999999999999999999999999997 7788988999999999999999
Q ss_pred hhhccccc------cchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCC----CCCCccc-hhhHHHHHHHHHHHHHHHHHH
Q 002018 503 GCVIIGNL------DLITPTITMFFLLCYSGVNLSCFLLDLLDAPSW----RPRWKFH-HWSLSLLGSVFCIVIMFLISW 571 (980)
Q Consensus 503 l~~l~~~~------~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~----r~~f~~~-~~~~~l~g~i~~~~~~~~~~~ 571 (980)
++.+..+. ++++++++++.+++|.+++++++++|++....- +-+|+-+ .++.+.++.++++++.....|
T Consensus 382 l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~ 461 (554)
T KOG1286|consen 382 LAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFY 461 (554)
T ss_pred HHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHh
Confidence 88887665 999999999999999999999999999632221 2223333 456777777777665555432
Q ss_pred -------------HHHHHHHHHHHHhhheeeeeCCCCCC
Q 002018 572 -------------SFTVVSLALASLIYYYVCLKGKAGDW 597 (980)
Q Consensus 572 -------------~~~~~~l~i~~~l~~~~~~~~~~~~w 597 (980)
.++..++.+++.+.++..++..+++|
T Consensus 462 ~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~ 500 (554)
T KOG1286|consen 462 VAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPT 500 (554)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeeccc
Confidence 23445566655555555665555543
No 7
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-49 Score=436.22 Aligned_cols=421 Identities=19% Similarity=0.199 Sum_probs=341.0
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
++++|.++.||.+++.+|+.+ |+|||++.|..+..|||. .+++|+++|+++++++-+++||... -|.
T Consensus 9 ~~l~rgL~~RHIqlIAiGGaI-----------GtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~ 75 (462)
T COG1113 9 QGLKRGLKNRHIQLIAIGGAI-----------GTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPV 75 (462)
T ss_pred hhhhhhhHHHHHHHHHHhhhh-----------hhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 459999999999999999743 778899999999999995 5569999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
+|++-.|+++.+||..||.+||.||+.|++.+..++++.+.|++.++|.. +.+++
T Consensus 76 ~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-------------------------P~Wv~ 130 (462)
T COG1113 76 SGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-------------------------PQWVF 130 (462)
T ss_pred CCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------------------cHHHH
Confidence 99999999999999999999999999999999999999999999998863 22478
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCC-cccccccccccccCcccccCCCCCCC
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPG-ITGLKLKTFKDNWFSDYQKTNNAGIP 354 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~-~~g~~~~~~~~n~~~~f~~~~~~g~~ 354 (980)
++++++++..+|+.++|.+||+|+++..+|++.++ +|++|+....++-+.++ .+|+ +|++++. .-
T Consensus 131 al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~------snl~~hG-------Gf 197 (462)
T COG1113 131 ALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGF------SNLWDHG-------GF 197 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccc------cccccCC-------Cc
Confidence 88999999999999999999999999999999998 77777655443322222 3333 3433321 11
Q ss_pred CCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhh--hhhhhh
Q 002018 355 DPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL--LTDRLL 432 (980)
Q Consensus 355 ~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~--~~~~~~ 432 (980)
.|+| +.+++.++...+|||.|+|.++..|+|+|||+|++|||+...++++.++|+.+++++..+.|+++. ..+|++
T Consensus 198 fP~G--~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV 275 (462)
T COG1113 198 FPNG--FLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFV 275 (462)
T ss_pred CCCc--hHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHH
Confidence 2333 678999999999999999999999999999999999999999999999999999999999999864 445776
Q ss_pred Hhh--cc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc--
Q 002018 433 TAT--IA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-- 507 (980)
Q Consensus 433 ~~~--~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-- 507 (980)
... .+ ...+.++|++++.+.+|+.|+.+|+.+|+|++||+||.+|+. +.+.+|+|+|++|+++++++.++..++
T Consensus 276 ~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~-~~klsk~gVP~~ai~~s~~~~~~~V~Lny 354 (462)
T COG1113 276 TVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKA-FAKLSKRGVPVNAILLSAVVLLLGVVLNY 354 (462)
T ss_pred HHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHh-HhhccccCCCHHHHHHHHHHHHHHHHHHh
Confidence 432 22 224689999999999999999999999999999999999996 889999999999999998887666554
Q ss_pred ----ccccchhhhhHHHHHHHHHHHHHHHHHhhhcC-CCCCCCCCccch-hhHHHH---HHHHHHHHHHHH-----HHHH
Q 002018 508 ----GNLDLITPTITMFFLLCYSGVNLSCFLLDLLD-APSWRPRWKFHH-WSLSLL---GSVFCIVIMFLI-----SWSF 573 (980)
Q Consensus 508 ----~~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~-~p~~r~~f~~~~-~~~~l~---g~i~~~~~~~~~-----~~~~ 573 (980)
..|+.+.++++..+++.|+++.+|++++|+.+ ...-+.+||.|. ++..++ .++..++.|++. ....
T Consensus 355 ~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~ 434 (462)
T COG1113 355 ILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLV 434 (462)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHH
Confidence 23788999999999999999999999999942 222345677763 233333 333333344332 2334
Q ss_pred HHHHHHHHHHhhheeeee
Q 002018 574 TVVSLALASLIYYYVCLK 591 (980)
Q Consensus 574 ~~~~l~i~~~l~~~~~~~ 591 (980)
..+|+++..+.|++.++|
T Consensus 435 ~~~~~~~l~i~~~~~~~~ 452 (462)
T COG1113 435 GPVWLVLLGIGYLVKRKK 452 (462)
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 455666665555554433
No 8
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=3.8e-46 Score=441.17 Aligned_cols=400 Identities=16% Similarity=0.160 Sum_probs=308.1
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~ 197 (980)
+++|+++.+|..++.+|.++ |+|+|+..|.++..+||.. +++|++++++.+++++|++||+++ +|.+
T Consensus 25 ~l~r~L~~~~~~~i~~G~~I-----------GsGiF~~~g~~~~~aGp~~-il~~li~~i~~~~v~~slaELas~-~P~a 91 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAI-----------GTGLFLGAGARLQMAGPAL-ALVYLICGLFSFFILRALGELVLH-RPSS 91 (499)
T ss_pred hhhccCCHhHhHHHhhhccc-----------cchHHHhhHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHHHh-CCCC
Confidence 48899999999888887754 6677888899999999965 679999999999999999999998 9999
Q ss_pred CchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHH
Q 002018 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYG 277 (980)
Q Consensus 198 GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~ 277 (980)
||.|.|++|.+||.+||.+||.+|++|+...+.+..+.+.+...+ +.. + .....+++
T Consensus 92 Gg~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~---------------------~-~~~~~~~~ 148 (499)
T PRK15049 92 GSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAF---------------------G-GVPQWVFA 148 (499)
T ss_pred CCHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccC---------------------C-CCcHHHHH
Confidence 999999999999999999999999999877777666665554322 211 0 01223567
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCC-CCcccccccccccccCcccccCCCCCCCC
Q 002018 278 IIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPA-PGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (980)
Q Consensus 278 ~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~-~~~~g~~~~~~~~n~~~~f~~~~~~g~~~ 355 (980)
.+++++++++|++|+|.++++|+++.++|++.++ +++++++....+.+. ....++. ++.+ .+...
T Consensus 149 ~~~~~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~------~~~~-------~~~~~ 215 (499)
T PRK15049 149 LAALTIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFH------LITD-------NGGFF 215 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccc------cccC-------CCCcc
Confidence 7788889999999999999999999999988877 445554432222211 1111111 1100 00011
Q ss_pred CCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhhH
Q 002018 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT 433 (980)
Q Consensus 356 ~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~~ 433 (980)
+.| +.+++.++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+++..+.|.+++.. +|+..
T Consensus 216 p~g--~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~ 293 (499)
T PRK15049 216 PHG--LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVT 293 (499)
T ss_pred ccc--HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHH
Confidence 222 34566667788999999999999999999999999999999999999999998888888888776532 34433
Q ss_pred h---hccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc---
Q 002018 434 A---TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII--- 507 (980)
Q Consensus 434 ~---~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~--- 507 (980)
. ......+.+++++++++.+++.|+.++++||++++|||||.+|++ +.+++|+++|++|++++++++++..++
T Consensus 294 ~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP~~-f~kv~k~~~P~~Ail~~~~i~~l~~~l~~~ 372 (499)
T PRK15049 294 FFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAPSF-MAKMSRQHVPYAGILATLVVYVVGVFLNYL 372 (499)
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 2 122334689999999999999999999999999999999999986 677789999999999998886554322
Q ss_pred ---ccccchhhhhHHHHHHHHHHHHHHHHHhhhcCC--CCCCCCCccc-hhhHHHHHHHHHHHHHHHH
Q 002018 508 ---GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDA--PSWRPRWKFH-HWSLSLLGSVFCIVIMFLI 569 (980)
Q Consensus 508 ---~~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~--p~~r~~f~~~-~~~~~l~g~i~~~~~~~~~ 569 (980)
..++++.++.+++.+++|.+++++++++|++.+ +..+++||.+ +++.+++++++++++++..
T Consensus 373 ~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~ 440 (499)
T PRK15049 373 VPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLM 440 (499)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHH
Confidence 237889999999999999999999999987422 2234578877 4567777777776655443
No 9
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=2.2e-46 Score=439.70 Aligned_cols=420 Identities=13% Similarity=0.119 Sum_probs=323.4
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
++++|+++.+|..++.+|++ +|+++|+..|.+++.+|| ..+++|++++++.++++++++||++. +|.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~-----------IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~-~P~ 72 (461)
T PRK10746 6 PELQRGLEARHIELIALGGT-----------IGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFL-EPV 72 (461)
T ss_pred hHHhccCcHHHHHHHHHHhh-----------hhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 46899999999998888874 377889999999999999 57789999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
+||.|.|++|.+||.+||.+||+||++|+...+.++.+++.++..++|.. +...+
T Consensus 73 sGg~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-------------------------~~~~~ 127 (461)
T PRK10746 73 TGSFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-------------------------AQWIP 127 (461)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-------------------------chHHH
Confidence 99999999999999999999999999999998989888888877665532 11356
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-Hhhheeeec-CCCCCCCCcccccccccccccCcccccCCCCCCC
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLA-SKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIP 354 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~-~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~ 354 (980)
.++++++++++|++|+|.++++|++++.+|++.++ ++++++... ...++.....++ +||.++- + .
T Consensus 128 ~~~~~~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~------~~~~~~~---g----~ 194 (461)
T PRK10746 128 ALIAVALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGF------SNLTEHG---G----F 194 (461)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcc------ccccCCC---C----c
Confidence 66777888899999999999999999999988876 444454321 111111111121 2332210 0 0
Q ss_pred CCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhh
Q 002018 355 DPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLL 432 (980)
Q Consensus 355 ~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~ 432 (980)
.+.| +.+++.++..++|+|.|+|.++.++||+|||+|++|||++.+++++.++|++..+++..+.|.+++.. +|++
T Consensus 195 ~~~g--~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v 272 (461)
T PRK10746 195 FAGG--WKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFV 272 (461)
T ss_pred Cccc--HHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHH
Confidence 1112 55788899999999999999999999999999999999999999999999998888888888887643 3554
Q ss_pred Hh--hccC-chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhh----
Q 002018 433 TA--TIAW-PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCV---- 505 (980)
Q Consensus 433 ~~--~~~~-~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~---- 505 (980)
.. ..+. ..+.+++++++++.++++|+.++++||++++|||||.+|++ +.+++|+|+|++|++++.++.++..
T Consensus 273 ~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP~~-~~~~~~~g~P~~al~~~~~~~~l~~~~~~ 351 (461)
T PRK10746 273 LTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAA-MAKVSRHGVPVAGVAVSILILLVGSCLNY 351 (461)
T ss_pred HHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHH-HHHhCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 32 1222 24678999999999999999999999999999999999996 7788899999999999865543322
Q ss_pred ccc----cccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCCccc-hhhHHHHHHHHHHHHHHHHH--------H
Q 002018 506 IIG----NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS-WRPRWKFH-HWSLSLLGSVFCIVIMFLIS--------W 571 (980)
Q Consensus 506 l~~----~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~-~r~~f~~~-~~~~~l~g~i~~~~~~~~~~--------~ 571 (980)
... .++++.+++++..++.|++++++++++|++.+.. .+++||.+ .++.++++.+.|+++++... .
T Consensus 352 ~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (461)
T PRK10746 352 IIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSL 431 (461)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 111 2678999999999999999999999999964322 24567765 34566667766666544432 2
Q ss_pred HHHHHHHHHHHHhhheeee
Q 002018 572 SFTVVSLALASLIYYYVCL 590 (980)
Q Consensus 572 ~~~~~~l~i~~~l~~~~~~ 590 (980)
...+.++++..+.|+++++
T Consensus 432 ~~~~~~~~~~~~~y~~~~~ 450 (461)
T PRK10746 432 FVGIIFLLAVTLIYKVFGL 450 (461)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 2233445555555554433
No 10
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=3.1e-45 Score=434.01 Aligned_cols=401 Identities=15% Similarity=0.176 Sum_probs=308.1
Q ss_pred CCCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 002018 116 GEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM 195 (980)
Q Consensus 116 ~~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p 195 (980)
+++++|+++.+|..+..+|++ +|+|+|+..|.+++.+||+..+++|++++++++++++|++||+++ +|
T Consensus 10 ~~~l~r~L~~~~~~~l~vG~~-----------IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~-~P 77 (489)
T PRK10836 10 APGLRRELKARHLTMIAIGGS-----------IGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAY-MP 77 (489)
T ss_pred cccccccCcHHHHHHHHHhhh-----------hhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
Confidence 345888888888877766654 477779999999999999878999999999999999999999998 99
Q ss_pred ccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHH
Q 002018 196 KGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQI 275 (980)
Q Consensus 196 ~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i 275 (980)
.+||.|.|+++.+||.+||.+||.+|+.++...+.+..+...++..++|.. ....
T Consensus 78 ~sGg~y~y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~-------------------------~~~~ 132 (489)
T PRK10836 78 VSGSFATYGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT-------------------------PGWI 132 (489)
T ss_pred CCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-------------------------chHH
Confidence 999999999999999999999999999998887766555544443333321 1124
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCC
Q 002018 276 YGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIP 354 (980)
Q Consensus 276 ~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~ 354 (980)
++.+++++++++|++|+|.++++|++++++|++.++ +++++++...+........+ ..||.++.. +
T Consensus 133 ~~~~~~~~~~~lN~~gv~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~-------~ 199 (489)
T PRK10836 133 WSALFLGVIFLLNYISVRGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAG------WSNWTIGDA-------P 199 (489)
T ss_pred HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCc------cccCCCCCC-------C
Confidence 566677788899999999999999999999988777 44445433221110000011 122321100 0
Q ss_pred CCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh-------
Q 002018 355 DPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL------- 427 (980)
Q Consensus 355 ~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~------- 427 (980)
.+.| +.+++.++...+|+|.|+|.+++++||+|||+|++|||++.++++++++|++..+.+....|.++..
T Consensus 200 ~~~g--~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~ 277 (489)
T PRK10836 200 FAGG--FAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVK 277 (489)
T ss_pred Cccc--HHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccc
Confidence 1112 3456666666789999999999999999999999999999999999999999887777776654321
Q ss_pred ---hhhhhHh--hcc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHH
Q 002018 428 ---TDRLLTA--TIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFIC 501 (980)
Q Consensus 428 ---~~~~~~~--~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~ 501 (980)
.+|+... ..+ .....++++++++++++++|+.++++||++++|||||.+|++ +.+++|+++|++|++++++++
T Consensus 278 ~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP~~-~~kv~~~~~P~~All~~~~~~ 356 (489)
T PRK10836 278 DISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPRI-FAKLSRGGVPRNALYATTVIA 356 (489)
T ss_pred cccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHH-HHhhCCCCCcHHHHHHHHHHH
Confidence 1233221 111 224678899999999999999999999999999999999986 778888999999999999988
Q ss_pred hhhhccc------cccchhhhhHHHHHHHHHHHHHHHHHhhhc---CCCCC-CCCCccch-hhHHHHHHHHHHHHHHHH
Q 002018 502 IGCVIIG------NLDLITPTITMFFLLCYSGVNLSCFLLDLL---DAPSW-RPRWKFHH-WSLSLLGSVFCIVIMFLI 569 (980)
Q Consensus 502 ~l~~l~~------~~~~l~~i~s~~~ll~y~~i~la~~~~r~~---~~p~~-r~~f~~~~-~~~~l~g~i~~~~~~~~~ 569 (980)
+++.+.. .++++.++.++..++.|.+++++++++|++ +.|+. +++||.|. ++.++++++.|+++++..
T Consensus 357 ~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~ 435 (489)
T PRK10836 357 GLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQ 435 (489)
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHH
Confidence 7666542 256788999999999999999999999985 35665 47899885 467888888888877654
No 11
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=7.5e-45 Score=427.03 Aligned_cols=397 Identities=15% Similarity=0.149 Sum_probs=312.4
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
++++|+++.+|..++.+|.++ |+++|+..|.++..+||+ .+++|++++++.+++++|++||++. +|.
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~I-----------GsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~-~P~ 83 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAI-----------GTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVE-EPV 83 (458)
T ss_pred hhhhccCcHhHhhhhhhhccc-----------chhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 358899999999988888744 667788889999999995 7789999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
+||.|.|++|.+||.+||.+||.+|+++....+.+..++..|+..++|.. ...++
T Consensus 84 ~Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------~~~~~ 138 (458)
T PRK10249 84 SGSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV-------------------------PTWIW 138 (458)
T ss_pred CCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-------------------------cHHHH
Confidence 99999999999999999999999999999888888888777776655421 12356
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCC
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~ 355 (980)
+.+++++++++|++|+|.++++|.+++++|++.++ +++++++....+++. ...++ +|..+ +.+ ..
T Consensus 139 ~~~~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~-~~~~~------~~~~~---~~~----~~ 204 (458)
T PRK10249 139 AAAFFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGG-EKASI------DNLWR---YGG----FF 204 (458)
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCh------hhccC---CCC----CC
Confidence 77788889999999999999999999999887766 444454332222110 11111 11111 000 00
Q ss_pred CCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhhH
Q 002018 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT 433 (980)
Q Consensus 356 ~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~~ 433 (980)
+.| +.+++.++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+.+..+.|.++... +|+..
T Consensus 205 ~~g--~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~ 282 (458)
T PRK10249 205 ATG--WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVM 282 (458)
T ss_pred CCc--HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHH
Confidence 112 44688899999999999999999999999999999999999999999999987777776666665432 34432
Q ss_pred h---hccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccc--
Q 002018 434 A---TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG-- 508 (980)
Q Consensus 434 ~---~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~-- 508 (980)
. ..+.....+++++++++.+++.|+.++++||++++|||||.+|++ +.+++|+++|++|++++++++.++.++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP~~-~~kv~~~~~P~~All~~~~i~~l~~l~~~~ 361 (458)
T PRK10249 283 IFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKF-LTRVSRRGVPINSLMLSGAITSLVVLINYL 361 (458)
T ss_pred HHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHH-HHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 222335678889999999999999999999999999999999986 6677889999999999999887654432
Q ss_pred ----cccchhhhhHHHHHHHHHHHHHHHHHhhhc-CCCCCCCCCccc-hhhHHHHHHHHHHHHHHH
Q 002018 509 ----NLDLITPTITMFFLLCYSGVNLSCFLLDLL-DAPSWRPRWKFH-HWSLSLLGSVFCIVIMFL 568 (980)
Q Consensus 509 ----~~~~l~~i~s~~~ll~y~~i~la~~~~r~~-~~p~~r~~f~~~-~~~~~l~g~i~~~~~~~~ 568 (980)
.++++.++.+...+++|++++++++++|++ +.++.+++||.+ +++.++++++.++++++.
T Consensus 362 ~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~ 427 (458)
T PRK10249 362 LPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLL 427 (458)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999974 344455678776 346677777777665544
No 12
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=5e-45 Score=428.24 Aligned_cols=399 Identities=13% Similarity=0.159 Sum_probs=312.4
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
++++|+++.+|..++.+|+++ |+++|+..|.++..+|| ..+++|++++++.+++++|++|++++ +|.
T Consensus 8 ~~l~r~L~~~~~~~i~ig~~I-----------GsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~-~P~ 74 (456)
T PRK10238 8 EQLKRGLKNRHIQLIALGGAI-----------GTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVE-EPV 74 (456)
T ss_pred hhhhccCcHHHHHHHHhhccc-----------cchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 458999999999888888654 66678888999999999 57889999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
+||.|+|++|.+||.+||.+||.++++|.+..+.+..++.+++..++|.. +...+
T Consensus 75 aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------------------------~~~~~ 129 (456)
T PRK10238 75 AGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEI-------------------------PTWVS 129 (456)
T ss_pred CCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------------------------cHHHH
Confidence 99999999999999999999999999999999999988888887665531 11255
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCC
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~ 355 (980)
.++++++++++|++|+|.++++|.+++++|++.++ +++++++....+.+.+.. . ..++.+ ..+ ..
T Consensus 130 ~~i~~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~-~------~~~~~~---~~~----~~ 195 (456)
T PRK10238 130 AAVFFVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQA-T------VSNLWD---QGG----FL 195 (456)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-c------ccccCC---CCC----Cc
Confidence 66777889999999999999999999999988877 444454332221111100 0 011111 000 01
Q ss_pred CCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhhH
Q 002018 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT 433 (980)
Q Consensus 356 ~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~~ 433 (980)
++| +.++..++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++....+....|.+++.. +|+..
T Consensus 196 ~~g--~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~ 273 (456)
T PRK10238 196 PHG--FTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVL 273 (456)
T ss_pred ccc--HHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHH
Confidence 112 34577778889999999999999999999999999999999999999999987776666677776532 35433
Q ss_pred h--hc-cCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc---
Q 002018 434 A--TI-AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII--- 507 (980)
Q Consensus 434 ~--~~-~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~--- 507 (980)
. .. ....+.++++.++++.+++.|++++++||++++|||||.+|++ +.+++|+++|++|+++++++++++.++
T Consensus 274 ~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP~~-f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~ 352 (456)
T PRK10238 274 IFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKA-LASVDKRGVPVNTILVSALVTALCVLINYL 352 (456)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH-HHhhCcCCCcHHHHHHHHHHHHHHHHHHhc
Confidence 2 12 2334678899999999999999999999999999999999986 677788999999999999988766553
Q ss_pred ---ccccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCC-CCCCCcc-chhhHHHHHHHHHHHHHHHHH
Q 002018 508 ---GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS-WRPRWKF-HHWSLSLLGSVFCIVIMFLIS 570 (980)
Q Consensus 508 ---~~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~-~r~~f~~-~~~~~~l~g~i~~~~~~~~~~ 570 (980)
..++++.++.+.+.+++|.+++++++++|+++.+. .+++++. .+++.+++++++++++++...
T Consensus 353 ~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 420 (456)
T PRK10238 353 APESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIML 420 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 23788999999999999999999999999853221 1233443 355677777777776665543
No 13
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=2e-44 Score=430.42 Aligned_cols=433 Identities=19% Similarity=0.226 Sum_probs=336.4
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhh-cccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIV-GMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~l-g~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
+++|+++..+.....+|.+ +|+++|...|.+. ..+||+ .+++|++++++++++++||+|+++. +|.
T Consensus 25 ~L~r~L~~~~l~~l~ig~v-----------iGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~-~P~ 91 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGST-----------IGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGAR-VPK 91 (557)
T ss_pred chhhcCCHHHHHHHHhhhh-----------hcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCC
Confidence 4777777776666665554 4666677777665 468997 6779999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CcchhhhhccCCCCCCCCCCCCC-CchhH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAA-GMFRETITKVNGTATPEPIQSPS-LHDLQ 274 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~-~~~~~~~~~~~g~~~~~~l~~~~-~~~~~ 274 (980)
+||.|.|+++.+|+.+||.+||.+++++.++.+..+.++..|+...+... +.+. ....+ +..+. .....
T Consensus 92 sGg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~---~~~~~------~~~~~l~~~~~ 162 (557)
T TIGR00906 92 AGSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFR---RTYFK------LNYDGLAEYPD 162 (557)
T ss_pred CCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc---ccccc------ccCCcccccch
Confidence 99999999999999999999999999999999998989888887665321 0000 00000 00000 01224
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCC
Q 002018 275 IYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGI 353 (980)
Q Consensus 275 i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~ 353 (980)
+++++++++++++|++|+|.+++++.++++++++.++ ++++|++.... +||...+.. + .+.
T Consensus 163 ~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~----------------~~~~~~~~~-~-~~~ 224 (557)
T TIGR00906 163 FFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADV----------------ANWSITEEK-G-AGG 224 (557)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCc----------------hhccccccc-c-CCC
Confidence 6677778888999999999999999999999988877 44445432211 222211100 0 000
Q ss_pred CCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hhhh
Q 002018 354 PDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT-DRLL 432 (980)
Q Consensus 354 ~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~-~~~~ 432 (980)
..+.| +.+++.++...+|+|.|+|++++++||+|||+|++|||++.++.+++++|++..+.+...+|++++.. +++.
T Consensus 225 f~p~g--~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~ 302 (557)
T TIGR00906 225 FMPYG--FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFP 302 (557)
T ss_pred CCCcc--hHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHH
Confidence 01112 45688899999999999999999999999999999999999999999999998877777777776533 2332
Q ss_pred Hh--hcc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecC-CCCCchhhHHHHHHHHhhhhccc
Q 002018 433 TA--TIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA-EGREPHIATFFTAFICIGCVIIG 508 (980)
Q Consensus 433 ~~--~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~-~~g~P~~Aill~~~i~~l~~l~~ 508 (980)
.+ ..+ .+...++.++++++.+++.++.+++.||++++|||||.+|++ +.+++ |+++|++|++++++++.++.++.
T Consensus 303 ~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP~~-fakv~~r~~tP~~Ail~~~iv~~il~~~~ 381 (557)
T TIGR00906 303 VAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLFKW-LAQINSKTKTPINATVVSGAIAALMAFLF 381 (557)
T ss_pred HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccHH-HhccCCCCCCcHHHHHHHHHHHHHHHHHc
Confidence 22 222 234678889999999999999999999999999999999986 66666 77999999999999998877778
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhhc--------------------------------------------------
Q 002018 509 NLDLITPTITMFFLLCYSGVNLSCFLLDLL-------------------------------------------------- 538 (980)
Q Consensus 509 ~~~~l~~i~s~~~ll~y~~i~la~~~~r~~-------------------------------------------------- 538 (980)
+++.+.++.+++.+++|.+++++++++|++
T Consensus 382 ~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (557)
T TIGR00906 382 DLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSIL 461 (557)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999853
Q ss_pred ---------------------------------CCCCC--CCCCccch-hhHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 002018 539 ---------------------------------DAPSW--RPRWKFHH-WSLSLLGSVFCIVIMFLI---SWSFTVVSLA 579 (980)
Q Consensus 539 ---------------------------------~~p~~--r~~f~~~~-~~~~l~g~i~~~~~~~~~---~~~~~~~~l~ 579 (980)
+.|+. +++||.|. ++++.++++.|+++|.-+ .|..+.+|++
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~ 541 (557)
T TIGR00906 462 TTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMA 541 (557)
T ss_pred HHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 12333 56688884 578999999999999875 6888999999
Q ss_pred HHHHhhheeeeeCC
Q 002018 580 LASLIYYYVCLKGK 593 (980)
Q Consensus 580 i~~~l~~~~~~~~~ 593 (980)
+++++|+.+++|+.
T Consensus 542 ~g~~~y~~yg~~~s 555 (557)
T TIGR00906 542 IGFLIYFLYGIRHS 555 (557)
T ss_pred HHHHHHhhhhhhcc
Confidence 99999999888764
No 14
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=3.2e-44 Score=420.30 Aligned_cols=380 Identities=16% Similarity=0.178 Sum_probs=300.9
Q ss_pred hhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHH
Q 002018 145 QNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGN 224 (980)
Q Consensus 145 ~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~ 224 (980)
.+++|+++|+..|.+++++||. .+++|++++++.++.+++++||+++ +|.+||.|.|++|.+||.+||.+||.+|+++
T Consensus 5 g~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~-~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~~~ 82 (446)
T PRK10197 5 AGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVA-TPDTGSFSTYADKAIGRWAGYTIGWLYWWFW 82 (446)
T ss_pred cchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 3467999999999999999995 7789999999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHH
Q 002018 225 AVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLI 304 (980)
Q Consensus 225 ~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~ 304 (980)
++..+.+..+.+.++..+.|. ....+++++++++++++|++|+|.++++|.++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~ 137 (446)
T PRK10197 83 VLVIPLEANIAAMILHSWVPG-------------------------IPIWLFSLVITLALTGSNLLSVKNYGEFEFWLAL 137 (446)
T ss_pred HHHHHHHHHHHHHHHHhcccc-------------------------CcHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHH
Confidence 999998887776665544332 1224678888889999999999999999999999
Q ss_pred HHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCc-ccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHh
Q 002018 305 PVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFS-DYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS 382 (980)
Q Consensus 305 ~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~-~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a 382 (980)
+|++.++ +++++++...+..+.....++ .+.|.+ .+ .++| +.+++.++...+|+|.|+|.++
T Consensus 138 ~ki~~li~~ii~~~~~~~g~~~~~~~~~~-----~~~~~~~~~---------~p~g--~~~~~~a~~~~~faf~G~e~~~ 201 (446)
T PRK10197 138 CKVIAILAFIFLGAVAISGFYPYAEVSGI-----SRLWDSGGF---------MPNG--FGAVLSAMLITMFSFMGAEIVT 201 (446)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCCcc-----hhcCCCCCC---------Cccc--HHHHHHHHHHHHHHHhCHHHHH
Confidence 9988877 445555433221111110110 011110 01 0112 4578999999999999999999
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh---hhhh--Hhhcc-CchHHHHHHHHHHHHHHHH
Q 002018 383 NRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT---DRLL--TATIA-WPFPAVIHIGIILSTLGAA 456 (980)
Q Consensus 383 ~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~---~~~~--~~~~~-~~~~~ii~~~il~s~lss~ 456 (980)
+++||+|||+|++|||++.+++++.++|++..+++....|+++... +++. ....+ ...+.+++++++++.+++.
T Consensus 202 ~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~ 281 (446)
T PRK10197 202 IAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCL 281 (446)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998888777777665321 1221 12222 3356889999999999999
Q ss_pred HHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc------ccccchhhhhHHHHHHHHHHHHH
Q 002018 457 LQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII------GNLDLITPTITMFFLLCYSGVNL 530 (980)
Q Consensus 457 ~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~------~~~~~l~~i~s~~~ll~y~~i~l 530 (980)
|+.++++||++++|||||.+|++ +.+++|+|+|++|++++.+++++.++. ..++++.++.+...++.|.++++
T Consensus 282 n~~~~~~sR~l~a~ardg~lP~~-~~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~ 360 (446)
T PRK10197 282 NSALYTASRMLYSLSRRGDAPAV-MGKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAV 360 (446)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHH-HHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 677788999999999998887665543 24788999999999999999999
Q ss_pred HHHHhhhc-CCCCCCCCCccc-hhhHHHHHHHHHHHHHHH
Q 002018 531 SCFLLDLL-DAPSWRPRWKFH-HWSLSLLGSVFCIVIMFL 568 (980)
Q Consensus 531 a~~~~r~~-~~p~~r~~f~~~-~~~~~l~g~i~~~~~~~~ 568 (980)
+++++|++ +.++.++++|.+ +++.++++++.|++++..
T Consensus 361 a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~ 400 (446)
T PRK10197 361 SQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVV 400 (446)
T ss_pred HHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHH
Confidence 99999985 345445677776 556777777777665544
No 15
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=2.2e-44 Score=425.08 Aligned_cols=400 Identities=14% Similarity=0.135 Sum_probs=304.2
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~ 197 (980)
+++|+++.+|..+..+|. ++|+++|+..|.+++.+||...+++|++++++.+++++|++||+++ +|.+
T Consensus 11 ~l~r~L~~~~~~~l~ig~-----------~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~-~P~a 78 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGG-----------VIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVA-MPET 78 (471)
T ss_pred hhhhcCcHHHHHHHHHHh-----------hhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 478888888777666664 4577889999999999999778899999999999999999999998 9999
Q ss_pred CchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHH
Q 002018 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYG 277 (980)
Q Consensus 198 GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~ 277 (980)
||.|.|+++.+||.+||.+||.+|++|....+..+.+...++...+|.. +..++.
T Consensus 79 GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------------------------~~~~~~ 133 (471)
T PRK11387 79 GAFHVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQV-------------------------PVWPWC 133 (471)
T ss_pred CCHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC-------------------------cHHHHH
Confidence 9999999999999999999999999999988877776665554443321 112445
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCC
Q 002018 278 IIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDP 356 (980)
Q Consensus 278 ~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~ 356 (980)
++++++++++|++|+|.++++|.++.++|++.++ ++++|++......+... + +.....+++. ..+ ..+
T Consensus 134 ~~~~~~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~--~-~~~~~~~~~~----~~~----~~~ 202 (471)
T PRK11387 134 LLFCALIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQD--G-SPAPGLRNLT----AEG----WFP 202 (471)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--C-CCCCcccccC----CCC----CCc
Confidence 5566778899999999999999999988888876 44445432211100000 0 0000001111 000 011
Q ss_pred CCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh--hhhhhHh
Q 002018 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TDRLLTA 434 (980)
Q Consensus 357 ~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~--~~~~~~~ 434 (980)
+| ..+++.++...+|+|+|+|.+++++||+|||+|++|||++.++.++.++|++..+++..+.|.++.. .+|+...
T Consensus 203 ~g--~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~ 280 (471)
T PRK11387 203 HG--GLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLV 280 (471)
T ss_pred cc--HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHH
Confidence 12 3467888888999999999999999999999999999999999999999999888777777766543 2344322
Q ss_pred ---hccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccc---
Q 002018 435 ---TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG--- 508 (980)
Q Consensus 435 ---~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~--- 508 (980)
..+.....+++++++++++++.|++++++||++++|||||.+|++ +.+++|+++|++|++++.+++++..+..
T Consensus 281 ~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~~~~~~~~P~~Ail~~~~~~~l~~~~~~~~ 359 (471)
T PRK11387 281 FEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPAC-FARLTKRGIPLTALSVSMLGGLLALFSSVVA 359 (471)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcCHH-HHHhCCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 223345678999999999999999999999999999999999986 6777889999999999877665443321
Q ss_pred ---cccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCC----CCCCCccc-hhhHHHHHHHHHHHHHHH
Q 002018 509 ---NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS----WRPRWKFH-HWSLSLLGSVFCIVIMFL 568 (980)
Q Consensus 509 ---~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~----~r~~f~~~-~~~~~l~g~i~~~~~~~~ 568 (980)
.++.+.++.++..++.|++++++++++|+++.+. .+++||.+ ++++++++++.|+++++.
T Consensus 360 ~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 427 (471)
T PRK11387 360 PDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVG 427 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHH
Confidence 1456888999999999999999999998854322 24677776 346788888887776654
No 16
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=5.2e-46 Score=440.45 Aligned_cols=452 Identities=22% Similarity=0.301 Sum_probs=344.5
Q ss_pred eecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHH
Q 002018 139 VFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGL 218 (980)
Q Consensus 139 v~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw 218 (980)
+...++.+++|+++|++.|.+++.+||...+++|++++++.++++.+++||+++ +|.+||.|.|++|.+||.+||++||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~-~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRR-FPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhh-hccccchhhhhhhccCCcCCceeeH
Confidence 345567778999999999999999999888999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccCCCcchhhhhccCCCCCCCCCCCCCCchh-HHHHHHHHHHHHHHHHhhhhHH
Q 002018 219 CFFLGNAVAGAMYVLGAVETFLKA--VPAAGMFRETITKVNGTATPEPIQSPSLHDL-QIYGIIVTIILCFIVFGGVKII 295 (980)
Q Consensus 219 ~~~l~~~~~~a~~~~~~~~~l~~~--~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~-~i~~~i~l~~~~~in~~Gvk~~ 295 (980)
.||+.+++..+.++.++..++... ++.. +..+.+ .+++++++++++++|++|+|.+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~i~~~~~~~l~~~gv~~~ 139 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGL---------------------PSTWVWGILIAIIFILLITLLNLFGVRVS 139 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccc---------------------cccccccchhhhhhhhhhhhhhhhhhhcc
Confidence 999999999999888877665544 2221 000100 1457888889999999999999
Q ss_pred HHHhhHHHHHHHHHHH-Hhhhe-eeecCCCCCCCC-cccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHH
Q 002018 296 NRVAPTFLIPVLLSIF-CIFVG-ILLASKDDPAPG-ITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFF 372 (980)
Q Consensus 296 ~~~~~~~~~~~il~i~-~iiig-~~~~~~~~~~~~-~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~ 372 (980)
+++|.++.+++++.++ +++++ +....++++.+. +.+.... +.+++.+++.+ +.+..+.+++.++..++
T Consensus 140 ~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 210 (478)
T PF00324_consen 140 GKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGS-FANNFPPGFTD--------PSGGGFSGFFAALVFAF 210 (478)
T ss_pred chHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccc-ccccccccccc--------ccccchhHHHHhhhhhh
Confidence 9999999999999988 44445 222333333222 1121111 22233332221 12234668999999999
Q ss_pred HhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh--h-----hhhhHh---hccCchHH
Q 002018 373 PAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--T-----DRLLTA---TIAWPFPA 442 (980)
Q Consensus 373 ~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~--~-----~~~~~~---~~~~~~~~ 442 (980)
++|+|+|+++.++||+|||+|+||||++.+++++.++|++..++....+|++++. . +++..+ ......+.
T Consensus 211 ~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~ 290 (478)
T PF00324_consen 211 FAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAW 290 (478)
T ss_pred cccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccc
Confidence 9999999999999999999999999999999999999999998888888877642 1 233322 22334578
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcccc------ccchhhh
Q 002018 443 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGN------LDLITPT 516 (980)
Q Consensus 443 ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~------~~~l~~i 516 (980)
+++++++++++++++++++++||++++|||||.+|+..+.+++|+|+|++|++++.+++++..+... ++++..+
T Consensus 291 i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~ 370 (478)
T PF00324_consen 291 IVNAGILISAFSSANASLYAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNI 370 (478)
T ss_pred eecccchhhhhhhhhhhhcccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhh
Confidence 9999999999999999999999999999999999943366788999999999999999887776543 4567888
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCC--CCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeCCC
Q 002018 517 ITMFFLLCYSGVNLSCFLLDLLDAP--SWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKGKA 594 (980)
Q Consensus 517 ~s~~~ll~y~~i~la~~~~r~~~~p--~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~l~i~~~l~~~~~~~~~~ 594 (980)
.++..++.|.+++++++++|++.+. ...+...+..+ ...++...+..+...+.+....+.+...+..+
T Consensus 371 ~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 440 (478)
T PF00324_consen 371 STISNLIVYILINISYIRFRKKFKYRGRSISELPFKSP----------FGPMFAILGIAALIIILIFLGFYPFVPYPGPP 440 (478)
T ss_pred hhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhh----------hhHHhHHHHHHHHHHHhhhhhhcccccccCCC
Confidence 9999999999999999998885211 11111211111 11111122222233334444455556677788
Q ss_pred CCCCchhHHHHHHHHHHHHHhcCCCCCCCcccCCceE
Q 002018 595 GDWGDGLKSAYFQLALRSLRSLGANQVHPKNWYPIPL 631 (980)
Q Consensus 595 ~~wG~~~~~~~~~~~~~~l~~l~~~~~h~k~~rP~il 631 (980)
.+|+...+...|......++.+-..+.|.|+||||+|
T Consensus 441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~k~~~~~~~ 477 (478)
T PF00324_consen 441 DNWGAISFIAAYIIVVIFLLLYVGYKIIKKTKRPQLL 477 (478)
T ss_pred cccCHHHHHHHHHHHHHHHhhheeEEEEEECCccccc
Confidence 8999999999999888888888888899999999975
No 17
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=1.3e-43 Score=420.03 Aligned_cols=426 Identities=17% Similarity=0.189 Sum_probs=317.5
Q ss_pred ccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cCc
Q 002018 121 ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK-GGG 199 (980)
Q Consensus 121 ~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~-~GG 199 (980)
|+++.+|..+..+|.+ +|+++|...|.+++.+||...+++|++++++.+++++|++||+++ +|+ +||
T Consensus 2 r~L~~~~~~~l~vg~~-----------IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~-~P~~gG~ 69 (478)
T TIGR00913 2 KSLKQRHIQMIALGGT-----------IGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATF-YPVVSGS 69 (478)
T ss_pred CCCcHHHHHHHHHhcc-----------ccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCC
Confidence 4556666655555554 466778888889999999888899999999999999999999998 995 556
Q ss_pred hhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHH
Q 002018 200 PYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGII 279 (980)
Q Consensus 200 ~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i 279 (980)
.|.|+++.+||.+||.+||.+|+++++..+.+..+.+.++....+.. ....+..+
T Consensus 70 ~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~ 124 (478)
T TIGR00913 70 FATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV-------------------------NPAVWIAI 124 (478)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-------------------------CHHHHHHH
Confidence 66799999999999999999999999999999988888776543321 11233455
Q ss_pred HHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccC--cccccCCCCCCCCC
Q 002018 280 VTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWF--SDYQKTNNAGIPDP 356 (980)
Q Consensus 280 ~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~--~~f~~~~~~g~~~~ 356 (980)
++++++++|++|+|..+++|.+++.+|++.++ ++++++....++.+.....++ .+|. +.|.+..
T Consensus 125 ~~~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~------~~~~~~~~~~~~~------- 191 (478)
T TIGR00913 125 FYVFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGF------RYWHDPGAFAGGT------- 191 (478)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcc------cccCCCCCCCCCC-------
Confidence 66778899999999999999999988887777 444454332222111111111 1111 1121110
Q ss_pred CCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhh--hhh------
Q 002018 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREE--LLT------ 428 (980)
Q Consensus 357 ~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~--~~~------ 428 (980)
.+..+.++..++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+.+..+.|.++ +.+
T Consensus 192 ~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~ 271 (478)
T TIGR00913 192 IGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSD 271 (478)
T ss_pred ccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCC
Confidence 011255788889999999999999999999999999999999999999999999998777777776553 221
Q ss_pred ---hhhhH--hhcc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHh
Q 002018 429 ---DRLLT--ATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICI 502 (980)
Q Consensus 429 ---~~~~~--~~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~ 502 (980)
+|+.. ...+ .....+++++++++++++.|+.++++||++++|||||.+|++ +.+++|+++|++|+++++++++
T Consensus 272 ~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~-f~k~~~~~~P~~Ai~~~~~~~~ 350 (478)
T TIGR00913 272 SAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGLAPKI-FAYVDRRGVPYVAVIVSSLFGL 350 (478)
T ss_pred cCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCcccHH-HHhhCCCCCCHHHHHHHHHHHH
Confidence 33322 1222 335678999999999999999999999999999999999986 6777889999999999998876
Q ss_pred hhhcc-c-----cccchhhhhHHHHHHHHHHHHHHHHHhhhc----CCCCCCCCCccch-hhHHHHHHHHHHHHHHHHHH
Q 002018 503 GCVII-G-----NLDLITPTITMFFLLCYSGVNLSCFLLDLL----DAPSWRPRWKFHH-WSLSLLGSVFCIVIMFLISW 571 (980)
Q Consensus 503 l~~l~-~-----~~~~l~~i~s~~~ll~y~~i~la~~~~r~~----~~p~~r~~f~~~~-~~~~l~g~i~~~~~~~~~~~ 571 (980)
+.++. + .++.+.++.+...++.|++++++++++|++ +.|+.+++||.+. ++.++++++.|+++++...|
T Consensus 351 l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (478)
T TIGR00913 351 LAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGY 430 (478)
T ss_pred HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 54442 1 367899999999999999999999999874 2455567888873 46788888888777766544
Q ss_pred H-------------HHHHHHHHHHHhhheeeeeCCCCCC
Q 002018 572 S-------------FTVVSLALASLIYYYVCLKGKAGDW 597 (980)
Q Consensus 572 ~-------------~~~~~l~i~~~l~~~~~~~~~~~~w 597 (980)
. ...+.+.+.+++|.+++.+++++.|
T Consensus 431 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (478)
T TIGR00913 431 VAFAPVKFSAKSFFEAYLSLPIFIALYIGHKVYKRDKLI 469 (478)
T ss_pred HHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHhccccCc
Confidence 2 1233444455556555554444445
No 18
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=389.62 Aligned_cols=423 Identities=20% Similarity=0.266 Sum_probs=337.9
Q ss_pred CcccccceeeeecccchhhhhhHhhhhhhhhhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHH
Q 002018 129 SDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGI-GDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRA 207 (980)
Q Consensus 129 ~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~-~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~ 207 (980)
+.+++|.+.|+++- +.+|+|+|+|.....++.++|+ +.+++.|++++++++..++||+|++|. +|++||.|.|+.++
T Consensus 10 ~~kkigll~~v~li-vg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~-ipksGgd~ayi~~a 87 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLI-VGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTS-IPKSGGDYAYISEA 87 (479)
T ss_pred ccceeeeecceeEE-EEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCcchhhHHHH
Confidence 45788888888641 3358899999999999999864 667889999999999999999999998 99999999999999
Q ss_pred hCchhhHHHHHHHHH-HHHHHHHHHHHHHHHH-HHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHH
Q 002018 208 LGPEVGVSIGLCFFL-GNAVAGAMYVLGAVET-FLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILC 285 (980)
Q Consensus 208 lgp~~Gf~~Gw~~~l-~~~~~~a~~~~~~~~~-l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~ 285 (980)
+||.+||..+|.-++ ....+.|..+..|++| +...+|. +.++....+.++++++++++
T Consensus 88 fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~--------------------c~~p~~~~~lla~~~l~~lt 147 (479)
T KOG1287|consen 88 FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL--------------------CDVPRVASKLLAAALLVLLT 147 (479)
T ss_pred hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC--------------------CCCchHHHHHHHHHHHHHHH
Confidence 999999999998554 4455669999999999 4455552 23445666789999999999
Q ss_pred HHHHhhhhHHHHHhhHHHHHHHHHHHHhhh-eeeecCCCCCCCCcccccccccccccCcc-cccCCCCCCCCCCCCchhH
Q 002018 286 FIVFGGVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSD-YQKTNNAGIPDPNGAVDWS 363 (980)
Q Consensus 286 ~in~~Gvk~~~~~~~~~~~~~il~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~-f~~~~~~g~~~~~g~~~~~ 363 (980)
.+|++++|+..++|.+++++|++++.++++ |+.....++ .+|+.++ |.... . ....
T Consensus 148 ~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~-------------~~~~~~~~f~g~~------~---~~g~ 205 (479)
T KOG1287|consen 148 LINSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGS-------------TQNFENSEFEGSD------T---DVGN 205 (479)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecc-------------cccccccccccCc------C---chHH
Confidence 999999999999999999999999995554 665332221 1232222 32211 0 1124
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhcc----Cc
Q 002018 364 FNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIA----WP 439 (980)
Q Consensus 364 f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~----~~ 439 (980)
+..+|-..+|+|.||+.....+||+|||+||+|||+..++..++++|++..+.+..+.++|+..+++.+.+.++ ..
T Consensus 206 i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~ 285 (479)
T KOG1287|consen 206 IALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGV 285 (479)
T ss_pred HHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccc
Confidence 66778888999999999999999999999999999999999999999999999999999999877765544332 33
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccccccchhhhhHH
Q 002018 440 FPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITM 519 (980)
Q Consensus 440 ~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~ 519 (980)
+++++-+.+.+|++++.|+.++++||.++++||+|++|.+....+.++.+|+.|+++++.++++..+.++++++++..+.
T Consensus 286 ~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf 365 (479)
T KOG1287|consen 286 FAWAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSF 365 (479)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56999999999999999999999999999999999999973334455569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHH---HH----HHHHHHHHHHHHHhhheeeeeC
Q 002018 520 FFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFL---IS----WSFTVVSLALASLIYYYVCLKG 592 (980)
Q Consensus 520 ~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~---~~----~~~~~~~l~i~~~l~~~~~~~~ 592 (980)
...+.+.+..++.+++|+ ++|+..||+|.|..+ +++-.++|+.+... .+ ..+.+..+..++.+|+.+.+.+
T Consensus 366 ~~~l~~~l~~~gll~lR~-k~p~~~rPiKvpl~~-p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~ 443 (479)
T KOG1287|consen 366 AYWLFRGLSMAGLLWLRW-KHPPLPRPIKVPLFI-PILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWK 443 (479)
T ss_pred HHHHHHHHHHHHHHHHHh-hCCCCCCCEeeeeeh-HHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEec
Confidence 999999999999999998 567799999998542 33333444433322 12 2334445566777777777666
Q ss_pred CCCCC
Q 002018 593 KAGDW 597 (980)
Q Consensus 593 ~~~~w 597 (980)
.++.|
T Consensus 444 ~~p~~ 448 (479)
T KOG1287|consen 444 KKPKW 448 (479)
T ss_pred CCcHH
Confidence 65655
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=7.7e-43 Score=410.45 Aligned_cols=397 Identities=16% Similarity=0.171 Sum_probs=302.7
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
.+++|+++.+|...+.+|++ +|+++|+..|..+..+||. .+++|++++++.++++++++||++. +|.
T Consensus 8 ~~~~~~L~~~~~~~i~ig~~-----------IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~-~P~ 74 (452)
T TIGR01773 8 LKLPNGLKTRHVTMLSIAGV-----------IGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVA-NPD 74 (452)
T ss_pred HhHhCcCcHHHHHHHHHhhh-----------hhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 35788888888777666653 4777788889999999996 5679999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
+||.|.|+++.+||.+||.+||.+|++|++..+.+..++.+++...+|.. +..++
T Consensus 75 ~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~ 129 (452)
T TIGR01773 75 TGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-------------------------PLWLF 129 (452)
T ss_pred CCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-------------------------cHHHH
Confidence 99999999999999999999999999999999999888888877665531 12366
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCC
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~ 355 (980)
+++++++++.+|++|+|.++++++++++++++.++ +++++++...+..+.....++ .++.+ .. + ..
T Consensus 130 ~~~~~~~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~------~~~~~---~~---~-~~ 196 (452)
T TIGR01773 130 SLILTIVLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGF------SNLTG---KG---G-FF 196 (452)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcc------ccccC---CC---C-cC
Confidence 77788888999999999999999999999888877 344444322221111111111 11111 00 0 01
Q ss_pred CCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhh--hh-hhhh
Q 002018 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL--LT-DRLL 432 (980)
Q Consensus 356 ~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~--~~-~~~~ 432 (980)
++| +.+++.++...+|+|.|+|.+++++||+|||+|++|||++.++.++.++|++..+.+....|.++. .+ +++.
T Consensus 197 ~~g--~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~ 274 (452)
T TIGR01773 197 PNG--IGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYV 274 (452)
T ss_pred ccc--HHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHH
Confidence 112 346889999999999999999999999999999999999999999999999877766666555432 12 2433
Q ss_pred Hh--hc-cCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccc-
Q 002018 433 TA--TI-AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIG- 508 (980)
Q Consensus 433 ~~--~~-~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~- 508 (980)
.. .. +.....+++++++++++++.|+.++++||++++|||||.+|++ +.+++|+++|++|++++.+++++..++.
T Consensus 275 ~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP~~-~~~v~~~~~P~~Ail~~~~~~~~~~l~~~ 353 (452)
T TIGR01773 275 AVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAPRV-FMKLNKKGVPVQAVLASTFFSFLTVVVNY 353 (452)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHH-HHhhCCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 22 22 2335678899999999999999999999999999999999986 6778889999999999998887655431
Q ss_pred -----cccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCcc--c-hhhHHHHHHHHHHHHHHH
Q 002018 509 -----NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKF--H-HWSLSLLGSVFCIVIMFL 568 (980)
Q Consensus 509 -----~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~--~-~~~~~l~g~i~~~~~~~~ 568 (980)
.++.+.++.+...++.|.+++++++++|++. |+.+++|++ + .+++++++++.++++++.
T Consensus 354 ~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 420 (452)
T TIGR01773 354 FAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKL-KANGEAIKIRMWLYPWLTWLVIIFICGILVS 420 (452)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccCCCccHHHHHHHHHHHHHHHH
Confidence 2567888888889999999999999998853 333333333 3 445666655555544433
No 20
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=2.2e-42 Score=405.66 Aligned_cols=411 Identities=16% Similarity=0.159 Sum_probs=309.9
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG 197 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~ 197 (980)
+++|+++..+..+..+|.++ | +.|...+..+..+||...+++|++++++.++++++++|++++ +|.+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~i-----------g-g~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~-~P~~ 70 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVI-----------S-GDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM-IPTA 70 (442)
T ss_pred hhhccCCHHHHHHhHHHHHh-----------h-ccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCC
Confidence 46777776666665555433 3 345555667778899888999999999999999999999998 9999
Q ss_pred CchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHH
Q 002018 198 GGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYG 277 (980)
Q Consensus 198 GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~ 277 (980)
||.|.|+++.+||.+||.+||.+++++.+..+.++.++++|+...+|.. +..+++
T Consensus 71 Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~-------------------------~~~~~~ 125 (442)
T TIGR00908 71 GGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG-------------------------PGWLAA 125 (442)
T ss_pred CCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------------------chhHHH
Confidence 9999999999999999999999999999999999999999988776532 112566
Q ss_pred HHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcc-cccCCCCCCCCC
Q 002018 278 IIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSD-YQKTNNAGIPDP 356 (980)
Q Consensus 278 ~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~-f~~~~~~g~~~~ 356 (980)
.+++++++++|++|+|.+++++.++.+++++.++.++.... .. ++. .|+.+. +.+. +...+
T Consensus 126 ~~~~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~--~~---------~~~----~~~~~~~~~~~---~~~~~ 187 (442)
T TIGR00908 126 LVFYIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGAMV--PH---------FDS----ANLFNGPQTGA---SSFLP 187 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--cc---------CCH----HHhccCCccCC---CCCCC
Confidence 77777889999999999999999988887776553332111 00 000 111110 0000 00011
Q ss_pred CCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhhH-
Q 002018 357 NGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT- 433 (980)
Q Consensus 357 ~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~~- 433 (980)
. .+.+++.++...+|+|.|+|.+++++||+|||+|++|||++.++.++.++|++..+......+.+++.. +++..
T Consensus 188 ~--~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~ 265 (442)
T TIGR00908 188 G--AYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEA 265 (442)
T ss_pred c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHH
Confidence 1 244678888889999999999999999999999999999999999999999976665555555555532 23322
Q ss_pred --hhccC--chHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcccc
Q 002018 434 --ATIAW--PFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGN 509 (980)
Q Consensus 434 --~~~~~--~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~ 509 (980)
...+. ....++++.++++.+++.++.+++++|++++|||||.+|++ +.+++|+++|++|+++++++++++.+.++
T Consensus 266 ~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~-~~~~~~~~~P~~Ail~~~~i~~~~~l~~~ 344 (442)
T TIGR00908 266 LESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPES-LSKVNRKKAPVLAIVVPGVIGFGLSLTGQ 344 (442)
T ss_pred HHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH-HHHhCCCCCcHHHHHHHHHHHHHHHHhcc
Confidence 12221 23467777888899999999999999999999999999986 66777999999999999999988877778
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch-hhHHHHHHHHHHHHHHH---HHH---HHHHHHHHHHH
Q 002018 510 LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHH-WSLSLLGSVFCIVIMFL---ISW---SFTVVSLALAS 582 (980)
Q Consensus 510 ~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~-~~~~l~g~i~~~~~~~~---~~~---~~~~~~l~i~~ 582 (980)
.+.+..+.++..++.|.+.+++++++|+ +.|+.+++||.|. ++.++++++.|+++++. .++ ....++.++..
T Consensus 345 ~~~l~~~~~~~~~~~y~~~~~a~i~lr~-~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (442)
T TIGR00908 345 TALIILVSVFGAIISYVLSMAAHFTLRI-RRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLI 423 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 8888899999999999999999999988 5788889999874 45667777666655443 333 22234444444
Q ss_pred Hhhhee
Q 002018 583 LIYYYV 588 (980)
Q Consensus 583 ~l~~~~ 588 (980)
+.|+.+
T Consensus 424 ~~~~l~ 429 (442)
T TIGR00908 424 GYYFLY 429 (442)
T ss_pred HHHHhh
Confidence 445443
No 21
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=2.2e-42 Score=406.75 Aligned_cols=417 Identities=16% Similarity=0.174 Sum_probs=312.7
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
++++|+++.++.....+|+ ++|+++|...|.+++.+||. .+++|++++++.+++++|++|++++ +|.
T Consensus 5 ~~l~r~L~~~~~~~i~vg~-----------~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~-~P~ 71 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGS-----------AIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVH-NPA 71 (457)
T ss_pred ccccccCcHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHH-cCC
Confidence 3477777766665555554 45888899999999999996 5889999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
+||.|.|++|.+||.+||.+||.+++++.+..+.+..++..+...++|.. . ...+
T Consensus 72 ~Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~-~~~~ 126 (457)
T PRK10580 72 ASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV------------------------P-HWIW 126 (457)
T ss_pred CCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------------------C-hHHH
Confidence 99999999999999999999999999998888888888888876665532 1 1244
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-Hhhheeeec-CCCCCCCCcccccccccccccCcccccCCCCCCC
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLA-SKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIP 354 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~-~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~ 354 (980)
.++++++++.+|++|+|.++++|.++++++++.++ ++++|++.. ..........+. .+ .+...+ .
T Consensus 127 ~~~~~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~------~~---~~~~~~----~ 193 (457)
T PRK10580 127 VLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGI------HN---LWSNGG----F 193 (457)
T ss_pred HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCc------cc---cCCCCC----C
Confidence 56667788999999999999999999998888776 333443211 110000000000 11 111100 0
Q ss_pred CCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhh
Q 002018 355 DPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLL 432 (980)
Q Consensus 355 ~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~ 432 (980)
.+.| +.+++.++...+|+|.|+|.+++++||+|||+|++|||++.+++++.++|++..+.+....|.+++.. +++.
T Consensus 194 ~~~g--~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~ 271 (457)
T PRK10580 194 FSNG--WLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFV 271 (457)
T ss_pred CCcc--hHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHH
Confidence 1112 44688889999999999999999999999999999999999999999999988777777777766532 3433
Q ss_pred Hh--hcc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc--
Q 002018 433 TA--TIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-- 507 (980)
Q Consensus 433 ~~--~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-- 507 (980)
.. ..+ .+...++++.++++.+++.|+.+++.||++++|||||.+|++ +.+++|+++|++|++++++++++..++
T Consensus 272 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~-~~kv~~~~~P~~Ai~~~~~~~~~~~~~~~ 350 (457)
T PRK10580 272 LTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKI-FSKTSRRGIPWVTVLVMTTALLFAVYLNY 350 (457)
T ss_pred HHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCHH-HHhhCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 22 222 234678888899999999999999999999999999999986 677888999999999997765443222
Q ss_pred ----ccccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCC-C-CCCCccc-hhhHHHHHHHHHHHHHHHHH--------HH
Q 002018 508 ----GNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPS-W-RPRWKFH-HWSLSLLGSVFCIVIMFLIS--------WS 572 (980)
Q Consensus 508 ----~~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~-~-r~~f~~~-~~~~~l~g~i~~~~~~~~~~--------~~ 572 (980)
..++.+.++.+...+++|.+++++++++|++.+++ + +++|+.+ +++.+++++++|++++.... ..
T Consensus 351 ~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 430 (457)
T PRK10580 351 IMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLY 430 (457)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHH
Confidence 12678999999999999999999999999864332 2 2467776 45778888888877665531 13
Q ss_pred HHHHHHHHHHHhhhe
Q 002018 573 FTVVSLALASLIYYY 587 (980)
Q Consensus 573 ~~~~~l~i~~~l~~~ 587 (980)
....+++++.+.|..
T Consensus 431 ~~~~~~~~~~~~y~~ 445 (457)
T PRK10580 431 VGFAWIVLLLIGWMF 445 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666666654
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=1e-41 Score=399.98 Aligned_cols=406 Identities=16% Similarity=0.197 Sum_probs=306.9
Q ss_pred ccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCc
Q 002018 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGP 210 (980)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp 210 (980)
+++|.+..+.+ .+.+++|+++|...+.+... |+ ..+++|++++++.++++++++||++. +|.+||.|.|+++.+||
T Consensus 8 ~~lg~~~~~~l-~vg~~iGsGif~~~~~~a~~-g~-~~~~~~~i~~~~~l~~al~~aEL~s~-~P~aGG~y~~~~~~~g~ 83 (445)
T PRK10644 8 HKVGLIPVTLM-VAGNIMGSGVFLLPANLAST-GG-IAIYGWLVTIIGALGLSMVYAKMSSL-DPSPGGSYAYARRCFGP 83 (445)
T ss_pred CCcCHHHHHHH-HHhhHhhhHHHhhHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCChhHHHHHHcCc
Confidence 45666555543 23457799999888876554 54 35789999999999999999999998 99999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 002018 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (980)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~ 290 (980)
.+||.+||.+|+++.+..+.....+..|....+|.. ...+...+++++++++++++|++
T Consensus 84 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~ln~~ 142 (445)
T PRK10644 84 FLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL---------------------KDPLVLTITCVVVLWIFVLLNIV 142 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------------------CCcHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988776666666666666555421 01122335667777789999999
Q ss_pred hhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHH
Q 002018 291 GVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVG 369 (980)
Q Consensus 291 Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~ 369 (980)
|+|..+++|.++++++++.++ ++++++....+ +++.+.+...+ ...+..+..++.
T Consensus 143 gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~----------------~~~~~~~~~~~--------~~~~~~~~~~~~ 198 (445)
T PRK10644 143 GPKMITRVQAVATVLALIPIVGIAVFGWFWFRG----------------ETYMAAWNVSG--------LGTFGAIQSTLN 198 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------------hhccCCccccc--------cchHHHHHHHHH
Confidence 999999999999988887666 34444322111 11111111000 012345777788
Q ss_pred HHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhhHh---hccCchHHHH
Q 002018 370 LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLTA---TIAWPFPAVI 444 (980)
Q Consensus 370 ~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~~~---~~~~~~~~ii 444 (980)
..+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++..+.+..+.|.+++.. +++... ..+.....++
T Consensus 199 ~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v 278 (445)
T PRK10644 199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIV 278 (445)
T ss_pred HHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHH
Confidence 89999999999999999999999999999999999999999998877777777766532 243322 2333345677
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc-------ccccchhhhh
Q 002018 445 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-------GNLDLITPTI 517 (980)
Q Consensus 445 ~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-------~~~~~l~~i~ 517 (980)
.++++++++++.++.++.++|++++|||||.+|++ +.+++|+++|++|++++++++.++.+. ..++.+.++.
T Consensus 279 ~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~-~~~v~~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~ 357 (445)
T PRK10644 279 SFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPI-FARVNKAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVS 357 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH-HHhhCcCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 88888999999999999999999999999999986 677788999999999999988765543 1478899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhheeee
Q 002018 518 TMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISW---SFTVVSLALASLIYYYVCL 590 (980)
Q Consensus 518 s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~---~~~~~~l~i~~~l~~~~~~ 590 (980)
++..+++|++++++++++|++ +|++++++ .+++++++++.|+++++...+ .+..++++++.++|++.+.
T Consensus 358 ~~~~li~y~~~~~~~~~l~~~-~~~~~~p~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 429 (445)
T PRK10644 358 VIFTLVPYLYTCAALLLLGHG-HFGKARPA---YLAVTLIAFVYCIWAVVGSGAKEVMWSFVTLMVITAFYALNYN 429 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhhc-CCcccccc---hhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999874 34444332 356889999999998876654 3344556666666665433
No 23
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=8.1e-42 Score=402.78 Aligned_cols=397 Identities=15% Similarity=0.232 Sum_probs=303.6
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
++++|+++.++..++.+|. ++|+|+|+..|.++..+|| ..+++|++++++.+++++|++|++++ .|.
T Consensus 16 ~~l~r~l~~~~~~~i~vG~-----------~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~-~~~ 82 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGG-----------AIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLS-NLE 82 (469)
T ss_pred hhhhccCcHHHHHHHHHhh-----------HHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence 3477777777776555554 5588899999999999999 56789999999999999999999997 899
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIY 276 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~ 276 (980)
.||.|.|+++.+||..||.+||.+|+++.+..+.++.++..|+..++|.. ....+
T Consensus 83 ~~~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-------------------------~~~~~ 137 (469)
T PRK11049 83 YKSFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-------------------------SDWVA 137 (469)
T ss_pred CCcHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------------------cHHHH
Confidence 99999999999999999999999999998888888888888877655531 11245
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCC
Q 002018 277 GIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPD 355 (980)
Q Consensus 277 ~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~ 355 (980)
+.+++++++++|++|+|.++++|++++.+|++.++ ++++|++....+..... + . ..++.+.+...+ ..
T Consensus 138 ~~~~~~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~--~-~----~~~~~~~~~~~~----~~ 206 (469)
T PRK11049 138 SLAVVLLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPT--G-V----EASFAHLWNDGG----MF 206 (469)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC--C-C----CCcccccCCCCC----CC
Confidence 56677788999999999999999999999988877 45556543322100000 0 0 001111111000 01
Q ss_pred CCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhhH
Q 002018 356 PNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLT 433 (980)
Q Consensus 356 ~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~~ 433 (980)
|.| +.+++.++...+|+|.|+|.+++++||+|||+|++|||+..+.+.+.++|++..+.+....|.+++.. +++..
T Consensus 207 p~g--~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~ 284 (469)
T PRK11049 207 PKG--LSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVE 284 (469)
T ss_pred ccc--HHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHH
Confidence 122 34688899999999999999999999999999999999999999999999998888877788777643 34332
Q ss_pred h--hcc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhh---hcc
Q 002018 434 A--TIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGC---VII 507 (980)
Q Consensus 434 ~--~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~---~l~ 507 (980)
. ..+ .....+++++++++.+++.|+.+++.||++++|||||.+|++ +.+++|+|+|++|++++++++++. ...
T Consensus 285 ~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~-~~kv~~~~tP~~Ai~~~~~~~~~~~~~~~~ 363 (469)
T PRK11049 285 LFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA-FAKLSKRAVPAKGLTFSCICLLGGVVLLYV 363 (469)
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH-HHhhCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 2 122 335678999999999999999999999999999999999986 677788899999999987765431 112
Q ss_pred -c----cccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCC--CCCccc-hhhHHHHHHHHHHHHH
Q 002018 508 -G----NLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWR--PRWKFH-HWSLSLLGSVFCIVIM 566 (980)
Q Consensus 508 -~----~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r--~~f~~~-~~~~~l~g~i~~~~~~ 566 (980)
. .++.+..+.++.+++.|.+++++++++|++ .|+.+ ++||.+ +++.++++.+.++++.
T Consensus 364 ~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~-~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~ 429 (469)
T PRK11049 364 NPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ-RPHLHEKSIYKMPLGKLMCWVCMAFFAFVL 429 (469)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhcCCCCCccCcCcchHHHHHHHHHHHHH
Confidence 1 367788888999999999999999999885 45553 468876 3355666666555443
No 24
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.9e-41 Score=403.35 Aligned_cols=415 Identities=16% Similarity=0.193 Sum_probs=312.1
Q ss_pred CCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhH-HHHHHHHHHHHHHHHHHHHHHHHcCCcc
Q 002018 117 EDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGD-SLLVVAFCGSCTFLTSISLSAIATNGAM 195 (980)
Q Consensus 117 ~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~-~li~~li~~~i~~~~~ls~aElat~~~p 195 (980)
++++|+++..+.....+|.++|+ ++|...+.++..+|+.+ .+++|++++++.++++++++|+++. +|
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGs-----------Gif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~-~P 105 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGS-----------GIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTT-IP 105 (501)
T ss_pred cccCccccHhHhhHhheeceEEe-----------eEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC
Confidence 34777777777777777666655 44555566777788754 4678999999999999999999998 99
Q ss_pred ccCchhhhHHHHhCchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hccCCCcchhhhhccCCCCCCCCCCCCCCchh
Q 002018 196 KGGGPYYLIGRALGPEVGVSIGLCFFLGN-AVAGAMYVLGAVETFLK-AVPAAGMFRETITKVNGTATPEPIQSPSLHDL 273 (980)
Q Consensus 196 ~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~-~~~~a~~~~~~~~~l~~-~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 273 (980)
.+||.|.|++|.+||.+||..||.+++.+ ....+.....+++|+.. .+|.. ..+.+..
T Consensus 106 ~sGG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~--------------------~~~~~~~ 165 (501)
T TIGR00911 106 KSGGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDC--------------------EVPEWAI 165 (501)
T ss_pred CCCchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------------------CCchHHH
Confidence 99999999999999999999999877643 45566666777777643 33321 0112334
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCC
Q 002018 274 QIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAG 352 (980)
Q Consensus 274 ~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g 352 (980)
.+++++++++++++|++|+|..++++.++.+++++.++ +++++++....++.. .. +....|...
T Consensus 166 ~~i~~~~i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~----~~-------~~~~~f~~~---- 230 (501)
T TIGR00911 166 RLVAVLCVLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVE----SL-------NPKNAFEGT---- 230 (501)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc----cc-------CcccccCCC----
Confidence 57777888899999999999999999999999988777 444454332221100 00 000111110
Q ss_pred CCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhh-h
Q 002018 353 IPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTDR-L 431 (980)
Q Consensus 353 ~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~~-~ 431 (980)
.....++..++...+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++..+.+....|.+++..+. .
T Consensus 231 -----~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~ 305 (501)
T TIGR00911 231 -----ETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAV 305 (501)
T ss_pred -----CCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHH
Confidence 0123468888899999999999999999999999999999999999999999999877777777777654432 1
Q ss_pred ----hHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecC-CCCCchhhHHHHHHHHhhhhc
Q 002018 432 ----LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA-EGREPHIATFFTAFICIGCVI 506 (980)
Q Consensus 432 ----~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~-~~g~P~~Aill~~~i~~l~~l 506 (980)
.....+ ....++.+.++++++++.|+.++++||++++|||||.+|+. +.+++ |+++|++|++++++++++..+
T Consensus 306 ~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP~~-~~~v~~~~~~P~~all~~~~i~~l~~~ 383 (501)
T TIGR00911 306 AVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLPSL-LSMIHVKRLTPLPSLLIVCTLTLLMLF 383 (501)
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH-HHHhcCCCCCCHHHHHHHHHHHHHHHc
Confidence 112233 34578888899999999999999999999999999999986 55555 679999999999999887777
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHH---H---HHHHHHHHHH
Q 002018 507 IGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLI---S---WSFTVVSLAL 580 (980)
Q Consensus 507 ~~~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~---~---~~~~~~~l~i 580 (980)
.+++..+..+.+..+++.|.+.+++++++|+ ++|+.+|+||.|. +.++++++.|+++++.. . ......++++
T Consensus 384 ~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~-~~p~~~rp~r~p~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (501)
T TIGR00911 384 SGDIYSLINLISFANWLFNALAVAGLLWLRY-KRPEMNRPIKVPL-FFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLT 461 (501)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHheec-cCCCCCCCccCch-HHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHH
Confidence 7888888888889999999999999999998 5788888999876 35666676666655432 1 1223345556
Q ss_pred HHHhhhe
Q 002018 581 ASLIYYY 587 (980)
Q Consensus 581 ~~~l~~~ 587 (980)
++.+|++
T Consensus 462 g~~~y~~ 468 (501)
T TIGR00911 462 GVPVYFF 468 (501)
T ss_pred HHHHHHH
Confidence 6666653
No 25
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1e-41 Score=399.41 Aligned_cols=413 Identities=13% Similarity=0.164 Sum_probs=310.3
Q ss_pred ccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCc
Q 002018 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGP 210 (980)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp 210 (980)
+++|.+..+.+ ++.+|+|+++|...+.+ ..+|+. .++.|++++++.++.+++++|+++. +|.+||.|.|++|.+||
T Consensus 6 ~~l~~~~~~~l-~vg~~iGsGif~~p~~~-~~~G~~-~~~~w~i~~~~~~~~a~~~aeL~~~-~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 6 NKMGVVQLTIL-TAVNMMGSGIIMLPTKL-AQVGTI-SILSWLVTAVGSMALAYAFAKCGMF-SRKSGGMGGYAEYAFGK 81 (438)
T ss_pred CcccHHHHHHH-HHHhhhhhHHHHhHHHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHhhh-CCCCCchHHHHHHHcCc
Confidence 45555554432 23457789988887664 467884 5779999999999999999999998 99999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 002018 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (980)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~ 290 (980)
.+||.+||.+|+++++..+....++..|+...+|.. .+.....++.++++++++++|++
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~---------------------~~~~~~~~~~~~~l~~~~~ln~~ 140 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGAT---------------------LSPVQICLATIGVLWLCTVANFG 140 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---------------------cchHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999998876666667777877666521 11123345666777888999999
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHh-hheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHH
Q 002018 291 GVKIINRVAPTFLIPVLLSIFCI-FVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVG 369 (980)
Q Consensus 291 Gvk~~~~~~~~~~~~~il~i~~i-iig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~ 369 (980)
|+|..++++.+...++++.++.+ +.++..... +|+.+.+.+.+ ...+.++..++.
T Consensus 141 g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~~----------------~~~~~~~~~~~--------~~~~~~~~~~~~ 196 (438)
T PRK10655 141 GARITGQISSVTVWGVIIPVVGLSIIGWFWFSP----------------SLYVAAWNPHH--------LPFFSAVGSSIA 196 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc----------------ccccCCcCccC--------CchHHHHHHHHH
Confidence 99999999999888777766633 333322111 12222221110 001345777888
Q ss_pred HHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhh---HhhccCchHHHH
Q 002018 370 LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLL---TATIAWPFPAVI 444 (980)
Q Consensus 370 ~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~ii 444 (980)
..+|+|.|+|.+++++||+|||+|++|||++.++.++.++|++.......+.|.+++.. +++. ....+.....++
T Consensus 197 ~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~ 276 (438)
T PRK10655 197 MTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIV 276 (438)
T ss_pred HHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHH
Confidence 89999999999999999999999999999999999999999987666656666666543 2332 223444456788
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc-------ccccchhhhh
Q 002018 445 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-------GNLDLITPTI 517 (980)
Q Consensus 445 ~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-------~~~~~l~~i~ 517 (980)
.++++++.+++.++.+++++|+++++||||.+|++ +.+++|+++|++|++++++++.++.+. ..++++.++.
T Consensus 277 ~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~-~~~v~~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~ 355 (438)
T PRK10655 277 MALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKI-FSRVTKVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLA 355 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH-HHhhCcCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 88999999999999999999999999999999986 677788899999999998887654432 2478899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhheeeeeCCC
Q 002018 518 TMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWS---FTVVSLALASLIYYYVCLKGKA 594 (980)
Q Consensus 518 s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~---~~~~~l~i~~~l~~~~~~~~~~ 594 (980)
++..++.|.+.+++++++|+++ |+.+++||.+ ..+++++.+.|++.++...+. ...+++++++++|.++.+|...
T Consensus 356 ~~~~~i~y~~~~~~~~~lr~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~ 433 (438)
T PRK10655 356 VVTNIIPYILSMAALVIIQKVA-NVPPSKAKVA-NFIAFVGALYSFYALYSSGEEAMLYGSIVTFLGWTLYGLISPRFEL 433 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhhC-CCCcchhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999998854 5545666653 356777887777665554432 2455677777777766555444
Q ss_pred C
Q 002018 595 G 595 (980)
Q Consensus 595 ~ 595 (980)
|
T Consensus 434 ~ 434 (438)
T PRK10655 434 K 434 (438)
T ss_pred c
Confidence 4
No 26
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=1.1e-41 Score=397.98 Aligned_cols=408 Identities=15% Similarity=0.179 Sum_probs=312.4
Q ss_pred ccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCc
Q 002018 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGP 210 (980)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp 210 (980)
+++|.+..+.+ .+.+|+|+++|...+.. ..+||. .+++|+++++..++.+++++||+++ +|.+||.|.|++| +||
T Consensus 5 ~~lg~~~~~~l-~vg~~IGsGif~lp~~~-a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~-~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 5 KKIGLFACTGV-VAGNMMGSGIALLPANL-ASIGSI-AIWGWIISIIGAMSLAYVYARLATK-NPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CcCCHHHHHHH-HHhhHHHHHHHHHHHHH-HHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCChhHHHHH-HCc
Confidence 45666655532 24558899999888865 567885 6789999999999999999999998 9999999999999 899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 002018 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (980)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~ 290 (980)
.+||.+||.||+.+.+..+...+++..|+...+|... ......+++.+++++++++|++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~---------------------~~~~~~~~~~~i~~~~~~ln~~ 138 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN---------------------DPIPAGIACIAIVWVFTFVNML 138 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC---------------------ChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987766666666777788877666320 0112235566677788999999
Q ss_pred hhhHHHHHhhHHHHHHHHHHHH-hhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHH
Q 002018 291 GVKIINRVAPTFLIPVLLSIFC-IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVG 369 (980)
Q Consensus 291 Gvk~~~~~~~~~~~~~il~i~~-iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~ 369 (980)
|+|..++++.+..+++++.++. ++.+..... ...+..+|.+. + +..+.+++.++.
T Consensus 139 gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~------------~~~~~~~~~~~----~--------~~~~~~~~~a~~ 194 (435)
T PRK10435 139 GGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFD------------AATYAANWNTS----D--------TTDGHAIIKSIL 194 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------HHhhcccccCC----C--------CchHHHHHHHHH
Confidence 9999999998887776665553 233321110 01111222211 0 112457889999
Q ss_pred HHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhhHh---hccCchHHHH
Q 002018 370 LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLLTA---TIAWPFPAVI 444 (980)
Q Consensus 370 ~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~~~---~~~~~~~~ii 444 (980)
..+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++..++.....|++++.. +|+... ..+.....++
T Consensus 195 ~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i 274 (435)
T PRK10435 195 LCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLV 274 (435)
T ss_pred HHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHH
Confidence 99999999999999999999999999999999999999999998888888888887633 344322 3344457888
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhc----c--------ccccc
Q 002018 445 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVI----I--------GNLDL 512 (980)
Q Consensus 445 ~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l----~--------~~~~~ 512 (980)
+++++++++++.|+.++..+|..++|||||.+|++ +.+++|+|+|++|++++++++.++.. + ..+++
T Consensus 275 ~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~~-f~k~nk~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 353 (435)
T PRK10435 275 SAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPKV-YGEVDKNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGE 353 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH-HHhhCcCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 88999999999999999999999999999999996 77888999999999998776643321 1 23788
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeC
Q 002018 513 ITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALASLIYYYVCLKG 592 (980)
Q Consensus 513 l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~l~i~~~l~~~~~~~~ 592 (980)
+.++.+...++.|++++++++++|+ +++++++ ..+.++++.+.|++.+....|.....++.++.+.|+++.+|+
T Consensus 354 l~~~~~~~~l~~y~~~~~~~ir~~~---~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (435)
T PRK10435 354 LTGIAVLLTMLPYFYSCVDLIRFEG---VNIRNFV---SLICSVLGCVFCFIALMGASSFELAGTFIVSLIILMFYARKM 427 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC---CchhHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999997754 3333322 346677777777777777788888888888888888777665
Q ss_pred CCC
Q 002018 593 KAG 595 (980)
Q Consensus 593 ~~~ 595 (980)
.++
T Consensus 428 ~~~ 430 (435)
T PRK10435 428 HER 430 (435)
T ss_pred cch
Confidence 544
No 27
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=1.3e-41 Score=399.26 Aligned_cols=415 Identities=13% Similarity=0.155 Sum_probs=313.8
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGG-IGDSLLVVAFCGSCTFLTSISLSAIATNGAMK 196 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG-~~~~li~~li~~~i~~~~~ls~aElat~~~p~ 196 (980)
+++|+++..+.....+|.++ |+++|...|.+...+| |+..+++|++++++.++++++++|+++. +|+
T Consensus 5 ~L~r~l~~~~~~~l~vg~~i-----------g~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~-~P~ 72 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTV-----------GSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTA-YPE 72 (445)
T ss_pred cccccccHHHHHHHHHHhhe-----------echhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCC
Confidence 46666666665555555443 5556767776666555 5567889999999999999999999998 999
Q ss_pred cCchhhhHHHHhCchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHH
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCF-FLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQI 275 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~-~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i 275 (980)
+||.|.|+++.+||.+||..||.. +..+....+.++.++.+|+...+|.. .....+
T Consensus 73 ~GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----------------------~~~~~~ 129 (445)
T PRK11357 73 NGADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPID-----------------------PLLGKF 129 (445)
T ss_pred CCCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------------------hHHHHH
Confidence 999999999999999999999974 45566677888888888876554421 112235
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCC
Q 002018 276 YGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIP 354 (980)
Q Consensus 276 ~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~ 354 (980)
++++++++++.+|++|+|..+++|.++++++++.++ ++++|++...++ |+.+......
T Consensus 130 ~~~~~~~~~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~----------------~~~~~~~~~~----- 188 (445)
T PRK11357 130 IAAGLIIAFMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAE----------------NFAAPTTTAI----- 188 (445)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----------------cccCCCcccc-----
Confidence 666777778899999999999999999999988776 444455322211 1111000000
Q ss_pred CCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh--hhh
Q 002018 355 DPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLL 432 (980)
Q Consensus 355 ~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~--~~~ 432 (980)
...| .+.+++.++...+|+|.|+|.+++++||+|||+|++|||++.++.+++++|++..+.+....|.+++..+ ++.
T Consensus 189 ~~~g-~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~ 267 (445)
T PRK11357 189 GATG-SFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPIS 267 (445)
T ss_pred cccc-hHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHH
Confidence 0011 1346788888999999999999999999999999999999999999999999987777777777765432 332
Q ss_pred Hh-----hccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecC-CCCCchhhHHHHHHHHhhhhc
Q 002018 433 TA-----TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA-EGREPHIATFFTAFICIGCVI 506 (980)
Q Consensus 433 ~~-----~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~-~~g~P~~Aill~~~i~~l~~l 506 (980)
.. ..+.....++.++++++.+++.++.+++++|++++|||||.+|++ +.+++ |+++|++|+++++++++++.+
T Consensus 268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~-~~~v~~~~~tP~~a~l~~~~~~~~~~~ 346 (445)
T PRK11357 268 DALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKC-FGHVHPKYNTPDVSIILQGALGIFFIF 346 (445)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHH-HHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 11 123334567778888899999999999999999999999999996 66655 789999999999999988877
Q ss_pred cccccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchh-hHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q 002018 507 IGNLDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHW-SLSLLGSVFCIVIMFLI-------SWSFTVVSL 578 (980)
Q Consensus 507 ~~~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~-~~~l~g~i~~~~~~~~~-------~~~~~~~~l 578 (980)
.++++.+..+.+...++.|.+.+++++++|++ ++++|+||.|.. .+++++++.++++.+.. .+...+.++
T Consensus 347 ~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~--~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (445)
T PRK11357 347 VSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKR--DDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVI 424 (445)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHheeecC--CCCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 88899999999999999999998898888763 456778998854 56778887777665432 133455667
Q ss_pred HHHHHhhheeeeeC
Q 002018 579 ALASLIYYYVCLKG 592 (980)
Q Consensus 579 ~i~~~l~~~~~~~~ 592 (980)
.+++.+|+++++|+
T Consensus 425 ~~g~~~y~~~~~~~ 438 (445)
T PRK11357 425 ATGLPAYAFWAKRS 438 (445)
T ss_pred HHhhhHHhheechh
Confidence 77777777655543
No 28
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=4.3e-41 Score=397.27 Aligned_cols=416 Identities=17% Similarity=0.255 Sum_probs=317.6
Q ss_pred ccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cCchhhhHHHHhC
Q 002018 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK-GGGPYYLIGRALG 209 (980)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~-~GG~y~~~sr~lg 209 (980)
+++|.+..+++ .+.+++|+++|...+.....+||+..+++|++++++.++.+++++|+++. +|. +||.|.|+++.+|
T Consensus 7 ~~l~~~~~~~l-~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~-~P~~sGG~y~y~~~~~G 84 (473)
T TIGR00905 7 KKLGLFALTAL-VIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATK-KPELDGGIYAYAREGFG 84 (473)
T ss_pred CCccHHHHHHH-HHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCChhhhHHhHcc
Confidence 45565555532 23457799999988888888899888899999999999999999999998 999 9999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 002018 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289 (980)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~ 289 (980)
|.+||.+||.+|+++.+..+.+...+.+++...+|..+ ....+...+++++++++++.+|+
T Consensus 85 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-------------------~~~~~~~~~~~~~~~~~~~~ln~ 145 (473)
T TIGR00905 85 PYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-------------------SGNPVPSILGASVLLWVFTFLVL 145 (473)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-------------------CCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988877777777777777666220 00112334566777778899999
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHH-hhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHH
Q 002018 290 GGVKIINRVAPTFLIPVLLSIFC-IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV 368 (980)
Q Consensus 290 ~Gvk~~~~~~~~~~~~~il~i~~-iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f 368 (980)
+|+|..++++.++..++++.++. ++++++....+ .+..++.++..+ .. +..+.++..++
T Consensus 146 ~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~------------~~~~~~~~~~~p-------~~-~~~~~~~~~~~ 205 (473)
T TIGR00905 146 RGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLD------------LFTADFWGHDVP-------SL-GSVFSQVKNTM 205 (473)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------------hcccccCccCCC-------cc-cchHHHHHHHH
Confidence 99999999999999998877764 44454321110 011122111110 00 11244678888
Q ss_pred HHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hh-h---hHhhccCchHH
Q 002018 369 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DR-L---LTATIAWPFPA 442 (980)
Q Consensus 369 ~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~-~---~~~~~~~~~~~ 442 (980)
...+|+|.|+|.+++++||+|| +|++|||++.++.+++++|++..++.....+.+++.+ ++ . .....+.....
T Consensus 206 ~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~ 284 (473)
T TIGR00905 206 LVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAV 284 (473)
T ss_pred HHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHH
Confidence 8899999999999999999999 9999999999999999999987776666677776543 23 2 12233444567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc-----ccccchhhhh
Q 002018 443 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----GNLDLITPTI 517 (980)
Q Consensus 443 ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-----~~~~~l~~i~ 517 (980)
++.++++++++++.++.+.+.||++++|||||.+|++ +.+++++++|++|++++++++.++.++ .+++++.++.
T Consensus 285 ~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP~~-~~~v~~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~ 363 (473)
T TIGR00905 285 LISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFPKI-FGRVNKNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLA 363 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHH-HHhhCccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 8889999999999999999999999999999999986 667788899999999998887544432 4688999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcC-CCCCCCCCccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhheeeeeC
Q 002018 518 TMFFLLCYSGVNLSCFLLDLLD-APSWRPRWKFHHWSLSLLGSVFCIVIMFLISW---SFTVVSLALASLIYYYVCLKG 592 (980)
Q Consensus 518 s~~~ll~y~~i~la~~~~r~~~-~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~---~~~~~~l~i~~~l~~~~~~~~ 592 (980)
++..++.|.+++++.+++|+++ .|+.+ +...+++++++.++|+++.+...+ ...++++++++.+|.+..+++
T Consensus 364 ~~~~~i~y~~~~~a~~~lr~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 364 VVMILVPYLLSAAYLLKLAKVGTYPKIK---NRKALIVGVIACVYSIWLLYAAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccccc---cchHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998754 13311 112457888999888887777654 335556677777777655544
No 29
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=2.2e-40 Score=384.81 Aligned_cols=374 Identities=16% Similarity=0.166 Sum_probs=288.7
Q ss_pred chhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHH
Q 002018 144 LQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLG 223 (980)
Q Consensus 144 ~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~ 223 (980)
+.+|+|+++|+..|.+.+.+|| ..+++|++++++.++++++++|+++. +|++||.|.|+++.+||.+||.+||.+++.
T Consensus 11 ~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~-~P~aGG~y~y~~~~~G~~~gf~~gw~~~~~ 88 (410)
T PRK11021 11 STSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH-FPHAGGPAHFVGMAFGPRLGRVTGWLFLSV 88 (410)
T ss_pred HHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHhHHHHhCchhHHHHHHHHHHH
Confidence 5568999999999999999998 56789999999999999999999998 999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHH
Q 002018 224 NAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFL 303 (980)
Q Consensus 224 ~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~ 303 (980)
+.+..+........++...+|.. .+....++.+++++++++|++|+|..++++.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~ 145 (410)
T PRK11021 89 IPVGLPAALQIAAGFGQALFGWS-----------------------SWQLLLAELLTLALLWLLNLRGASSSANLQTVIA 145 (410)
T ss_pred HHhhHHHHHHHHHHHHHHHcCCC-----------------------CchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87776665555566776655521 1222356667778889999999999999999877
Q ss_pred HHHHHHHHHhhheeeecCCCCCCCCcccccccccccccC-cccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHh
Q 002018 304 IPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWF-SDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS 382 (980)
Q Consensus 304 ~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~-~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a 382 (980)
++++..++.++.. ...+ ..++. +++. ...+.++..++...+|+|.|+|.++
T Consensus 146 ~~~~~i~~~~~~~----~~~~-------------~~~~~~~~~~-----------~~~~~~~~~~~~~~~~af~G~e~~~ 197 (410)
T PRK11021 146 LLIVALVVAIWWA----GDIK-------------PADIPFPAPG-----------SIEWSGLFAALGVMFWCFVGIEAFA 197 (410)
T ss_pred HHHHHHHHHHHHH----cCCc-------------hhcCCCCCCC-----------CccHHHHHHHHHHHHHHHhcHHHHH
Confidence 5443332221110 0000 01110 0000 0123468888999999999999999
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh--hhhh---hHhhccCchHHHHHHHHHHHHHHHHH
Q 002018 383 NRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL--TDRL---LTATIAWPFPAVIHIGIILSTLGAAL 457 (980)
Q Consensus 383 ~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~--~~~~---~~~~~~~~~~~ii~~~il~s~lss~~ 457 (980)
+++||+|||+|++|||++.++.++.++|++..+.+....+.++.. ..+. .....+.....++.+..+++++++.|
T Consensus 198 ~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~ 277 (410)
T PRK11021 198 HLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVN 277 (410)
T ss_pred hhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766554444433321 1222 12233444567788888999999999
Q ss_pred HHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc-----ccccchhhhhHHHHHHHHHHHHHHH
Q 002018 458 QSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----GNLDLITPTITMFFLLCYSGVNLSC 532 (980)
Q Consensus 458 s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-----~~~~~l~~i~s~~~ll~y~~i~la~ 532 (980)
+.+++.||++++|||||.+|++ +.+++|+++|++|++++.++++++.++ .+++.+..+.+..+++.|.+.+++.
T Consensus 278 ~~~~~~sR~l~a~ardg~lP~~-~~k~~~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~ 356 (410)
T PRK11021 278 IYTQSFARLVWSQAREGRPPSY-LARLSARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAA 356 (410)
T ss_pred HHHHHHHHHHHHHHccCCccHH-HHhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 677788999999999998877654432 4688899999999999999999999
Q ss_pred HHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 533 FLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVVSLALAS 582 (980)
Q Consensus 533 ~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~~l~i~~ 582 (980)
+++++++ .+++++++++.|+++++...|......+...+
T Consensus 357 ~~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (410)
T PRK11021 357 CKLLKGR-----------YRPLAVLGCLLCLLLLVMLGWKMLYALIMLAL 395 (410)
T ss_pred HHHhccc-----------hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988632 14689999999999998888776544444433
No 30
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.4e-39 Score=380.77 Aligned_cols=413 Identities=18% Similarity=0.276 Sum_probs=318.8
Q ss_pred ccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCc
Q 002018 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGP 210 (980)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp 210 (980)
+++|.+..+.+ ++.+++|+++|...+...+.+|+. .++.|++++++.++++++++|++++ +|.+||.|.|++|.+||
T Consensus 3 r~l~~~~~~~~-~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~-~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 3 RELGLFDLTML-GIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAM-LPVAGSPYTYAYEAMGE 79 (429)
T ss_pred ccccHHHHHHH-HHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCcceeeHHHHhCc
Confidence 44555555432 233467888898888888888885 5678999999999999999999998 99999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCC--CCCchhHHHHHHHHHHHHHHH
Q 002018 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQS--PSLHDLQIYGIIVTIILCFIV 288 (980)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~--~~~~~~~i~~~i~l~~~~~in 288 (980)
.+|+.+||.+++++.+..+.+..++++++...++..+.. .+..... .......+.+++++++++.+|
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 148 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD-----------LPAVLTAKPGNGGVFNLPALLIVLFLTYIL 148 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-----------CchhhhcCCcccccccHHHHHHHHHHHHHH
Confidence 999999999999999999999999999887776521100 0000000 001111245677888899999
Q ss_pred HhhhhHHHHHhhHHHHHHHHHHHH-hhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHH
Q 002018 289 FGGVKIINRVAPTFLIPVLLSIFC-IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNAL 367 (980)
Q Consensus 289 ~~Gvk~~~~~~~~~~~~~il~i~~-iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~ 367 (980)
++|+|..++++.++..++++.++. +++++.... ..|+.+.+. . ...++..+
T Consensus 149 ~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~----------------~~~~~~~~~----------~--~~~~~~~~ 200 (429)
T TIGR00909 149 YLGAKESGKVNDILVVLKVAALLLFAALGAIHFA----------------SNNYTPFMP----------M--GFGGVGAA 200 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCc----------------HHhcCCCCC----------C--cHHHHHHH
Confidence 999999999999999988887764 333432111 112322111 0 12357788
Q ss_pred HHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh--hhhH---hhccCchHH
Q 002018 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLT---ATIAWPFPA 442 (980)
Q Consensus 368 f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~--~~~~---~~~~~~~~~ 442 (980)
+...+|+|.|+|.+++++||+|||+|++||++..++.++.++|++..++.....|.+++..+ ++.. ...+.....
T Consensus 201 ~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (429)
T TIGR00909 201 TALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGL 280 (429)
T ss_pred HHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHH
Confidence 88999999999999999999999999999999999999999999987777777777765433 2221 123334567
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecC-CCCCchhhHHHHHHHHhhhhccccccchhhhhHHHH
Q 002018 443 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVA-EGREPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (980)
Q Consensus 443 ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~-~~g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ 521 (980)
++.++++++.+++.++.+++.||+++++||||.+|++ +.+++ |+++|++|++++.++++++.+.++++.+.++.++..
T Consensus 281 ~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~-~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~ 359 (429)
T TIGR00909 281 ILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS-LSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGT 359 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH-HHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999986 66655 779999999999999888777788999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCccch-hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhe
Q 002018 522 LLCYSGVNLSCFLLDLLDAPSWRPRWKFHH-WSLSLLGSVFCIVIMFLISW---SFTVVSLALASLIYYY 587 (980)
Q Consensus 522 ll~y~~i~la~~~~r~~~~p~~r~~f~~~~-~~~~l~g~i~~~~~~~~~~~---~~~~~~l~i~~~l~~~ 587 (980)
++.|.+.+++++++|+ ++|+.+++||.+. ++.+.+.++.|+++.....| ....++++++++.|.+
T Consensus 360 ~~~y~~~~~a~~~lr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 360 LIAFAAVNVAVIILRR-RRPDIQRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHHHHHHHHHHHh-hcCCCCCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987 5688888898864 34555566666665555443 4566788888887754
No 31
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.9e-39 Score=382.87 Aligned_cols=412 Identities=17% Similarity=0.197 Sum_probs=307.3
Q ss_pred cccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc-CchhhhHHHHhCc
Q 002018 132 KLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKG-GGPYYLIGRALGP 210 (980)
Q Consensus 132 ~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~-GG~y~~~sr~lgp 210 (980)
++|.+..+.+ .+.+|+|+++|...+.+...+||+..+++|++++++.++++++++|++++ +|++ ||.|.|+++.+||
T Consensus 2 ~lgl~~~~~l-~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~-~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 2 KLGLGALTAL-VVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANK-KPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCHHHHHHH-HHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCChhhhHHhHcCc
Confidence 3444444432 24558899999999999999999888999999999999999999999998 9986 5999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 002018 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (980)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~ 290 (980)
.+||.+||.+|+++.++.+.+......++...+|... ........+.+.+++++++++|++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-------------------~~~~~~~~~~~~~~~~~~~~ln~~ 140 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-------------------GGNNPPSIIGASVLLWCVHFLVLR 140 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------------CCCcHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988777777666666665555321 000112234556667778899999
Q ss_pred hhhHHHHHhhHHHHHHHHHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHH
Q 002018 291 GVKIINRVAPTFLIPVLLSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVG 369 (980)
Q Consensus 291 Gvk~~~~~~~~~~~~~il~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~ 369 (980)
|+|..+++|.+++++|++.++ +++++++...++. +..++.++..+ +.+.+..+.++..++.
T Consensus 141 Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~------------~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 202 (468)
T TIGR03810 141 GVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDT------------FTNDFWGNANG------GFSLGSVMTQVKNMML 202 (468)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhh------------cCccccccccc------cCccccHHHHHHHHHH
Confidence 999999999999999988877 4444543322211 00111000000 0001222345667888
Q ss_pred HHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hh-hh---HhhccCchHHH
Q 002018 370 LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DR-LL---TATIAWPFPAV 443 (980)
Q Consensus 370 ~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~-~~---~~~~~~~~~~i 443 (980)
..+|+|.|+|.+++++||.|| +|++||++..++.+++++|++..+......+.+++.. ++ .. ....+.+...+
T Consensus 203 ~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~ 281 (468)
T TIGR03810 203 VTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVL 281 (468)
T ss_pred HHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHH
Confidence 899999999999999999998 7999999999999999999987666555566655432 23 21 22344446789
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc-----ccccchhhhhH
Q 002018 444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-----GNLDLITPTIT 518 (980)
Q Consensus 444 i~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-----~~~~~l~~i~s 518 (980)
++++++++++++.|+.++++||++++|||||.+|++ +.+++|+|+|++|++++.+++.++.+. ..++.+.++.+
T Consensus 282 i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP~~-f~k~~~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~ 360 (468)
T TIGR03810 282 INIGLIISILGAWLSWTLLPAEIPLLMAKDKLMPKY-FGKENANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT 360 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH-HHhhCCCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999986 677789999999999998887554432 34788999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhe
Q 002018 519 MFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWSFTVV---SLALASLIYYY 587 (980)
Q Consensus 519 ~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~~~~~---~l~i~~~l~~~ 587 (980)
...++.|.+++++++++|+++.++..+++ ...++.++.+.|+++++...|..... .+++++.+|++
T Consensus 361 ~~~li~y~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~ 429 (468)
T TIGR03810 361 SAILVPYLWSAAYQVKLSWRGGQERGRRK---QLLIGLVALLYAVWLIYAAGLKYLLLSAILYAPGIYFYAR 429 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhh---hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999875422211222 34678888899998888877665433 33444455543
No 32
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=8.7e-38 Score=370.63 Aligned_cols=385 Identities=14% Similarity=0.128 Sum_probs=272.0
Q ss_pred hHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhC----chhhHHHHHHHHHHHH
Q 002018 150 IIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG----PEVGVSIGLCFFLGNA 225 (980)
Q Consensus 150 ~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lg----p~~Gf~~Gw~~~l~~~ 225 (980)
+++|...+..++.+||...+++|++++++.++++++++||+++ +|.+||.|.|++|.+| +..||.+||.+++++.
T Consensus 31 ~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~-~P~~Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~ 109 (482)
T TIGR00907 31 TGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSA-YPTSGGQYFWSAKLAPPRQMPFASWMTGWFNLAGQV 109 (482)
T ss_pred HHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhh-CCCCccHHHHHHHhcccccccceeHHHHHHHHHHHH
Confidence 5667777778888999888999999999999999999999998 9999999999999987 5679999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHH
Q 002018 226 VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP 305 (980)
Q Consensus 226 ~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~ 305 (980)
..++....+++.++...+.... +.....++.+...++.++++++++++|++|+|..++++.+..++
T Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~~~~~~~~~~~ 175 (482)
T TIGR00907 110 AGTASTDLSVAQLILGIVSLTT--------------PGREYIPTRWHIFGIMIGIHLIHALINSLPTKWLPRITSSAAYW 175 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--------------CCCCccccCchhhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 9988888887777765432100 00000112233345666777889999999999999999998877
Q ss_pred HHHHHHHh-hheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhh
Q 002018 306 VLLSIFCI-FVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNR 384 (980)
Q Consensus 306 ~il~i~~i-iig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~ 384 (980)
+++.++.+ ++.++....+. ... .+. ..++.++. +...+.| .++..++....|+|+|+|.++++
T Consensus 176 ~i~~~~~~~i~~l~~~~~~~-~~~--~~~----~~~~~~~~------~g~~~~g---~~~~~~~~~~~fsf~G~e~~~~~ 239 (482)
T TIGR00907 176 SLLGFLTICITLLACKSPKF-NDG--KFV----FTNFNNST------GGWKPGG---FAFLLGLLNPAWSMTGYDGTAHM 239 (482)
T ss_pred HHHHHHHHhhhhhccCCCCC-CCh--hhh----heeeeCCC------CCcCCCc---hhhhhhhhhhHHHhcCcchhhHH
Confidence 77666633 33322211100 000 000 11221110 0001112 24666667778999999999999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc-cchhhhhh----hhhhH---hhccC-chHHHHHHHHHHHHHHH
Q 002018 385 SASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA-ATREELLT----DRLLT---ATIAW-PFPAVIHIGIILSTLGA 455 (980)
Q Consensus 385 a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~-~~~~~~~~----~~~~~---~~~~~-~~~~ii~~~il~s~lss 455 (980)
+||+|||+|++|||++.++.+..++|++..+.+... .+.++..+ +|+.. ...+. ....++++.++++.+++
T Consensus 240 a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 319 (482)
T TIGR00907 240 AEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFFC 319 (482)
T ss_pred HHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 999999999999999999988777655433322222 23333222 23322 12233 34567888899999999
Q ss_pred HHHHhhhhHHHHHHHhcCCCCC--ccceeecCCC-CCchhhHHHHHHHHhhhhcc-----ccccchhhhhHHHHHHHHHH
Q 002018 456 ALQSLTGAPRLLAAIANDDILP--VLNYFKVAEG-REPHIATFFTAFICIGCVII-----GNLDLITPTITMFFLLCYSG 527 (980)
Q Consensus 456 ~~s~l~~asR~L~alArDg~lP--~~~~~~~~~~-g~P~~Aill~~~i~~l~~l~-----~~~~~l~~i~s~~~ll~y~~ 527 (980)
.++.++++||++++|||||.+| ++ +.+++++ ++|++|++++++++.++.++ ..++.+.++.+..++++|++
T Consensus 320 ~~~~~~~~sR~l~a~ardg~lP~~~~-f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~ 398 (482)
T TIGR00907 320 AITCMTANSRMIYAFSRDGGLPFSPL-WSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVI 398 (482)
T ss_pred HHHHHHHHHHHHHHHHhcCCcCchHh-hceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 65 5676655 99999999999888665544 25888999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCccc--hhhHHHHHHHHHHHHHHH
Q 002018 528 VNLSCFLLDLLDAPSWRPRWKFH--HWSLSLLGSVFCIVIMFL 568 (980)
Q Consensus 528 i~la~~~~r~~~~p~~r~~f~~~--~~~~~l~g~i~~~~~~~~ 568 (980)
+.++.+++|+ ++.-+++|+.+ .++++.++++.+++.+..
T Consensus 399 ~~~~~l~~~~--~~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~ 439 (482)
T TIGR00907 399 PIICKLAKGR--NTIAPGPFWLGKYGFFVNAVAVAWTVFSSVL 439 (482)
T ss_pred HHHHHHHhcC--CCCCCCCCcCCcchHHHHHHHHHHHHHHHhh
Confidence 8887765544 23445678774 335566666666655544
No 33
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=2.4e-37 Score=365.69 Aligned_cols=415 Identities=16% Similarity=0.213 Sum_probs=284.8
Q ss_pred CCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhh
Q 002018 123 YGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYY 202 (980)
Q Consensus 123 l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~ 202 (980)
+++++..+|++|.+.-+.+.......++++|..+|..+..+|| ..+++|++++++.++++++++||++. +|.+||.|+
T Consensus 5 ~g~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~-~P~aGG~Y~ 82 (475)
T TIGR03428 5 FGYQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAAR-YPISGAIYQ 82 (475)
T ss_pred cCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCCHHH
Confidence 4455555566666555432112112577889999999999999 57889999999999999999999998 999999999
Q ss_pred hHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCC-CCchhHHHHHHHH
Q 002018 203 LIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSP-SLHDLQIYGIIVT 281 (980)
Q Consensus 203 ~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~-~~~~~~i~~~i~l 281 (980)
|++|.+||.+||.+||.+++++.+..+....++..++...++..... +.+ ..+..+ ..++..+++.+++
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~ 152 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQII--------GED--PTLTSPSGAANAVLLGSVLL 152 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--------ccC--ccccCCCchHHHHHHHHHHH
Confidence 99999999999999999999998877766666554443332211000 000 000001 1133456777788
Q ss_pred HHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCch
Q 002018 282 IILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVD 361 (980)
Q Consensus 282 ~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~ 361 (980)
++++++|++|+|..++++.+..+++++.++.+++..+.....++ . +. +..++.+ . ..+ ..
T Consensus 153 ~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~--~---~~---f~~~~~~-~----------~~~-~~ 212 (475)
T TIGR03428 153 VLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGP--G---VV---FDTSVTG-A----------SPG-YY 212 (475)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--c---ee---eecCCCC-C----------Ccc-HH
Confidence 88999999999999999999988888776644433222111100 0 00 0001100 0 001 13
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccc-hhhh--hh--hhhh-Hhh
Q 002018 362 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT-REEL--LT--DRLL-TAT 435 (980)
Q Consensus 362 ~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~-~~~~--~~--~~~~-~~~ 435 (980)
..|..++...+|+|+|+|.+++++||+|||+|++|||++.++.+++++|++..+......+ .++. .. .+.. ...
T Consensus 213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 292 (475)
T TIGR03428 213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAV 292 (475)
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHH
Confidence 4577777788999999999999999999999999999999999998877764443333322 2211 11 1222 122
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCcc-ceeecC-CCCCchhhHHHHHHHHhhhhcc--c---
Q 002018 436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVL-NYFKVA-EGREPHIATFFTAFICIGCVII--G--- 508 (980)
Q Consensus 436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~-~~~~~~-~~g~P~~Aill~~~i~~l~~l~--~--- 508 (980)
.+.....++.+.++++.+++.+++++++||+++++||||.+|+. .+.+++ |+++|++|+++++++++++.++ +
T Consensus 293 ~g~~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~ 372 (475)
T TIGR03428 293 LDSPWGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSA 372 (475)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHH
Confidence 23333456667788899999999999999999999999999973 245656 6799999999999998766554 2
Q ss_pred cccchhhhhHHHHHHHHHHHHHHHHHhhhcC-CC----CCCCCCccch--hhHHHHHHHHHHHHHHHH
Q 002018 509 NLDLITPTITMFFLLCYSGVNLSCFLLDLLD-AP----SWRPRWKFHH--WSLSLLGSVFCIVIMFLI 569 (980)
Q Consensus 509 ~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~-~p----~~r~~f~~~~--~~~~l~g~i~~~~~~~~~ 569 (980)
.++.+.++.++..+++|.++.++.+..|++. +| --+.+|+++. +.+++++++.++++++..
T Consensus 373 af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~ 440 (475)
T TIGR03428 373 LFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNL 440 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 3688999999999999998888877666532 11 1234576653 345555555555554443
No 34
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1.5e-35 Score=350.35 Aligned_cols=371 Identities=16% Similarity=0.226 Sum_probs=258.0
Q ss_pred hcccchhHHHHHHHHHHHHH-HHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 160 VGMGGIGDSLLVVAFCGSCT-FLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVET 238 (980)
Q Consensus 160 lg~aG~~~~li~~li~~~i~-~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~ 238 (980)
.+..|+ .+++.|++++++. ++++++++||++. +|++||.|.|++|++||.+||..||.+|+++++..+......+..
T Consensus 25 ~a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~-~P~~GG~y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~ 102 (474)
T TIGR03813 25 EAEYGL-SAAFYYLFAAIFFLVPVSLVAAELATA-WPEKGGVFRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVS 102 (474)
T ss_pred HHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCceeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345676 4556888888876 5799999999998 999999999999999999999999999999987766554433333
Q ss_pred HHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHH-HHHHHH-Hhhhe
Q 002018 239 FLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIP-VLLSIF-CIFVG 316 (980)
Q Consensus 239 l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~-~il~i~-~iiig 316 (980)
+....+.... ...+. ...+....++++++++++++|++|+|.+++++.+...+ +++.++ +++++
T Consensus 103 ~~~~~~~~~~-------------~~~~~-~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~~ 168 (474)
T TIGR03813 103 LAFIGPEATV-------------DESLA-GNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGGIVGTIIPAAILVILG 168 (474)
T ss_pred HHHhcCcccc-------------Ccccc-cccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111000 00000 11122224556666678889999999999999886443 333333 44445
Q ss_pred eeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchh
Q 002018 317 ILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIP 396 (980)
Q Consensus 317 ~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP 396 (980)
++....+++.. .++++ .++.|++. + +..+.. .+..+|+|.|+|.++..+||+|||+|++|
T Consensus 169 ~~~~~~g~~~~--~~~~~----~~~~p~~~-----------~--~~~~~~-~~~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 169 ISYLLTGGESQ--IPLRW----DDAFPDFT-----------N--FDNVVL-AASIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHcCCCCC--CCCCH----HHhCCCcc-----------c--cccHHH-HHHHHHHHhchhHhHHHHHhccCcccchh
Confidence 43322222111 11111 11112111 0 112322 23457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hhh----hHh--hcc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 002018 397 IGTLAATLTTTALYVISVLLFGAAATREELLT-DRL----LTA--TIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLLA 468 (980)
Q Consensus 397 ~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~-~~~----~~~--~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L~ 468 (980)
||++.++.++.++|++..+.+..+.|.++... ++. ... ..+ .....++.++++++.+++.++.+++.+|+++
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998777777777766432 221 111 112 2345677888888999999999999999999
Q ss_pred HHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhc----cc----cccchhhhhHHHHHHHHHHHHHHHHHhhhcCC
Q 002018 469 AIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVI----IG----NLDLITPTITMFFLLCYSGVNLSCFLLDLLDA 540 (980)
Q Consensus 469 alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l----~~----~~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~ 540 (980)
++||||.+|++ +.+++|+++|++|++++++++.++.+ .. .++.+.++.++.+++.|++++++.+++|+ +.
T Consensus 309 a~ardg~lP~~-~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~-~~ 386 (474)
T TIGR03813 309 AVAKAGYLPTF-FQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRY-SQ 386 (474)
T ss_pred HHhhcCCCCHH-HhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence 99999999986 67778999999999999887543221 11 26778888999999999999999999887 45
Q ss_pred CCCCCCCccch-----hhHHHHHHHHHHHHHHH
Q 002018 541 PSWRPRWKFHH-----WSLSLLGSVFCIVIMFL 568 (980)
Q Consensus 541 p~~r~~f~~~~-----~~~~l~g~i~~~~~~~~ 568 (980)
|+.+++||.|. |.++.++.+.+++.+++
T Consensus 387 ~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~ 419 (474)
T TIGR03813 387 PDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVL 419 (474)
T ss_pred CCCCCCeEecCCccchhHHHHHHHHHHHHHHhe
Confidence 66678888863 34666666666665544
No 35
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-36 Score=338.76 Aligned_cols=390 Identities=16% Similarity=0.198 Sum_probs=286.7
Q ss_pred CCCCCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhh--hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002018 115 DGEDAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRF--TWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATN 192 (980)
Q Consensus 115 ~~~~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~--g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~ 192 (980)
+++++..++++++..+|.+.++.-..+ ..++.|...-++. .+.++.+||..++++|++++++.+|+++|++|+|+.
T Consensus 32 ~d~~~L~~lgYkqef~R~fs~~s~fg~--sFs~~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa 109 (550)
T KOG1289|consen 32 SDEELLAELGYKQELKREFSLFSIFGI--SFSLMGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSA 109 (550)
T ss_pred CCHHHHHHcCCchhhhhhhhHHHHHHH--HHHHhcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 445666778888888888886654421 1112222222222 234556799999999999999999999999999998
Q ss_pred CccccCchhhhHHHHh----CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCC
Q 002018 193 GAMKGGGPYYLIGRAL----GPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSP 268 (980)
Q Consensus 193 ~~p~~GG~y~~~sr~l----gp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~ 268 (980)
+|.+||.|+|+.... +|..+|.+||..+++++...|+...+.++.+...+.-.+ +. -.+
T Consensus 110 -~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~n--------------p~--y~~ 172 (550)
T KOG1289|consen 110 -MPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTN--------------PN--YEP 172 (550)
T ss_pred -CCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcC--------------CC--Ccc
Confidence 999999999998755 556678899999999999999999998888776643210 00 123
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccC
Q 002018 269 SLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKT 348 (980)
Q Consensus 269 ~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~ 348 (980)
..+...++...++++++++|+.+.|+..+++.+-....++.++++++.+.....+++ ||+... ....+|.+.
T Consensus 173 ~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~-----gFns~~---~iF~~f~N~ 244 (550)
T KOG1289|consen 173 TNYHQFGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKT-----GFNSGS---FIFGKFNNY 244 (550)
T ss_pred cceEeehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-----CCCCCc---eeeeccccc
Confidence 335555777788889999999999999999999888888877755555544443321 333211 111112111
Q ss_pred CCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccc--hhhh
Q 002018 349 NNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAAT--REEL 426 (980)
Q Consensus 349 ~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~--~~~~ 426 (980)
..+.+ ..+.|+..|....|.++|+|+.+|++||+|||+|++|||++.++.+..++-.+.++.+..+.+ .|.+
T Consensus 245 ---sgw~~---~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v 318 (550)
T KOG1289|consen 245 ---SGWKN---NGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAV 318 (550)
T ss_pred ---CCCCc---chHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 11111 246788888888889999999999999999999999999999999999999876666655554 3344
Q ss_pred hhh----hhh---HhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCcccee-ecCCC-CCchhhHHHH
Q 002018 427 LTD----RLL---TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYF-KVAEG-REPHIATFFT 497 (980)
Q Consensus 427 ~~~----~~~---~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~-~~~~~-g~P~~Aill~ 497 (980)
.++ |++ ....+.-....++..++++.+..+.+++.++||+.|+.||||.+|..+.. +++++ ++|.+|+++.
T Consensus 319 ~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~ 398 (550)
T KOG1289|consen 319 LNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLS 398 (550)
T ss_pred hcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHH
Confidence 443 222 22233333467888889999999999999999999999999999986544 66776 9999999999
Q ss_pred HHHHhhhhcc-----ccccchhhhhHHHHHHHHHHHHHHHHHhhh
Q 002018 498 AFICIGCVII-----GNLDLITPTITMFFLLCYSGVNLSCFLLDL 537 (980)
Q Consensus 498 ~~i~~l~~l~-----~~~~~l~~i~s~~~ll~y~~i~la~~~~r~ 537 (980)
.+++.++.++ ..++++.++..+..+++|....++.+.+.|
T Consensus 399 ~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r 443 (550)
T KOG1289|consen 399 CIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGR 443 (550)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecc
Confidence 9998766553 348999999999999999777666555554
No 36
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.8e-34 Score=342.10 Aligned_cols=364 Identities=19% Similarity=0.257 Sum_probs=251.3
Q ss_pred hcccchhHHHHHHHHHHHH-HHHHHHHHHHHHcCCcc-ccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHH---HH
Q 002018 160 VGMGGIGDSLLVVAFCGSC-TFLTSISLSAIATNGAM-KGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYV---LG 234 (980)
Q Consensus 160 lg~aG~~~~li~~li~~~i-~~~~~ls~aElat~~~p-~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~---~~ 234 (980)
.+..|+. ++..|++++++ .++++++++||+++ +| .+||.|.|++|++||.+||.++|.+|+.+++..+... .+
T Consensus 28 ~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~-~p~~~GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~ 105 (507)
T TIGR00910 28 FATSGFH-LVFFLLLGGILWFIPVALCAAEMATV-DGWEEGGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILG 105 (507)
T ss_pred HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCCCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455643 33345554554 57799999999998 86 8999999999999999999999999998876544332 22
Q ss_pred HHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHH-HH-H
Q 002018 235 AVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLS-IF-C 312 (980)
Q Consensus 235 ~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~-i~-~ 312 (980)
+..|+.. ++.. ..+.+...+..++++++++++|+.|+|..++++.+..+..++. ++ +
T Consensus 106 ~~~y~~~-~~~~--------------------~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~~i~~~~~~~i~~~il 164 (507)
T TIGR00910 106 ALSYILK-FPAL--------------------NEDPIIKFIAALIIFWALAFSQFGGTKRTAKIAKAGFFAGILIPAFIL 164 (507)
T ss_pred HHHHHhc-Cchh--------------------ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333321 1211 0111222344556677888999999999999998755433332 22 3
Q ss_pred hhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccc
Q 002018 313 IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQ 392 (980)
Q Consensus 313 iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ 392 (980)
++++++...++++... .++ .+++.|++.. .+.+..+..+.|+|.|+|.+++++||+|||+
T Consensus 165 i~l~~~~~~~g~~~~~--~~~----~~~~~p~~~~--------------~~~~~~~~~~~faf~G~E~~a~~a~E~knP~ 224 (507)
T TIGR00910 165 FALAAAYFHGGAPIAI--EID----SHAFFPDFSK--------------VGTLVVFVAFIGAYMGVEASASHINELENPG 224 (507)
T ss_pred HHHHHHHHhCCCcccc--CCc----HHhcCCCccc--------------ccHHHHHHHHHHHHhcHHHHHHHHHHccCCc
Confidence 3333332222221110 000 0112222211 1234455566889999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh-hhhhH------hhcc---CchHHHHHHHHHHHHHHHHHHHhhh
Q 002018 393 RSIPIGTLAATLTTTALYVISVLLFGAAATREELLT-DRLLT------ATIA---WPFPAVIHIGIILSTLGAALQSLTG 462 (980)
Q Consensus 393 ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~-~~~~~------~~~~---~~~~~ii~~~il~s~lss~~s~l~~ 462 (980)
|++|||++.+++++.++|++..+.++.+.|.+++.. +.... ...+ .+...++.+.++++.+++.++.+++
T Consensus 225 r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~ 304 (507)
T TIGR00910 225 RDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVG 304 (507)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987787777777766432 21111 1111 1234578888899999999999999
Q ss_pred hHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc----c-----cccchhhhhHHHHHHHHHHHHHHHH
Q 002018 463 APRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII----G-----NLDLITPTITMFFLLCYSGVNLSCF 533 (980)
Q Consensus 463 asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~----~-----~~~~l~~i~s~~~ll~y~~i~la~~ 533 (980)
.||+++++||||.+|++ +.+++|+|+|++|++++++++.++.++ + .++.+.++.++.+++.|+++.++++
T Consensus 305 ~sR~l~~~ardg~lP~~-~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i 383 (507)
T TIGR00910 305 PSRGMFAAAQKGLLPAA-FAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYF 383 (507)
T ss_pred HHHHHHHhcccCCcCHH-HHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999986 667789999999999998887654322 1 2455667788999999999999999
Q ss_pred HhhhcCCCCCCCCCccch-----hhHHHHHHHHHHHHHHH
Q 002018 534 LLDLLDAPSWRPRWKFHH-----WSLSLLGSVFCIVIMFL 568 (980)
Q Consensus 534 ~~r~~~~p~~r~~f~~~~-----~~~~l~g~i~~~~~~~~ 568 (980)
++|+ +.|+.+|+||.|+ +.++.++++.|++..++
T Consensus 384 ~lr~-k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~ 422 (507)
T TIGR00910 384 VLIL-KHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFI 422 (507)
T ss_pred HHHH-hcCCCCCCeEecCCccchhhHHHHHHHHHHHHHhe
Confidence 9988 4677788888863 34566666666655543
No 37
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.2e-34 Score=344.17 Aligned_cols=374 Identities=13% Similarity=0.143 Sum_probs=251.1
Q ss_pred hhcccchhHHHHHHHHHH-HHHHHHHHHHHHHHcCCccc-cCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 159 IVGMGGIGDSLLVVAFCG-SCTFLTSISLSAIATNGAMK-GGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAV 236 (980)
Q Consensus 159 ~lg~aG~~~~li~~li~~-~i~~~~~ls~aElat~~~p~-~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~ 236 (980)
....+||...+ .|++++ ++.++++++++|++++ +|. +||.|+|+++.+||.+||..+|.+|.+++...+.......
T Consensus 31 ~~~~~G~~~i~-~~~i~~~~~~l~~al~~aEL~s~-~P~~aGG~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~ 108 (496)
T PRK15238 31 AFYLMGYSAIP-WYILSAILFFIPFALMMAEYGSA-FKDEKGGIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIW 108 (496)
T ss_pred HHHHcChHHHH-HHHHHHHHHHHHHHHHHHHHHhc-CCCCCCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567886554 455555 4467899999999998 997 8999999999999999999999988888765433222111
Q ss_pred H-HHHHhccCCCcchhhhhccCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH-Hh
Q 002018 237 E-TFLKAVPAAGMFRETITKVNGTATPEPIQSPSLH-DLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF-CI 313 (980)
Q Consensus 237 ~-~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~-~i 313 (980)
. .....++..... .+ ........ ...+++++++++++++|++|+|..++++.+..+++++..+ ++
T Consensus 109 ~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~~~~~~i~~~~~~~~~~~~~~~i 176 (496)
T PRK15238 109 IPFSTFIFGKDTTQ--------TW----HFLGLNSTQVVGILAVIWMILVTFVASKGINKIAKVTSIGGIAVMLLNIVLL 176 (496)
T ss_pred HHHHHHHcCcchhh--------hh----hhhcccchHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111111000 00 00000011 1124555566678999999999999999987666544322 22
Q ss_pred hhe--eeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhccccccc
Q 002018 314 FVG--ILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDT 391 (980)
Q Consensus 314 iig--~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP 391 (980)
+++ .+...+++... .+.. .+|.+...+ + . ....+++.++...+|+|+|+|.+++++||+|||
T Consensus 177 i~~~~~~~~~~~~~~~---~~~~----~~~~~~~~~----~---~--~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p 240 (496)
T PRK15238 177 LVSIIILILNGGHFAQ---PIGV----SSFVTSPNP----A---Y--QSPIAVLSFVVFAIFAYGGIEAVGGLVDKTENP 240 (496)
T ss_pred HHHHHHHHHcCCCccc---cccH----hhcccCCCC----c---c--ccchHHHHHHHHHHHHHHhHHHHHHHHHhccCC
Confidence 211 11111111000 0110 111110000 0 0 012357788888999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh--------hhhH-hh------------------ccCchHHHH
Q 002018 392 QRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--------RLLT-AT------------------IAWPFPAVI 444 (980)
Q Consensus 392 ~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~--------~~~~-~~------------------~~~~~~~ii 444 (980)
+|++|||++.+++++.++|++..+.++..+|.++...+ ++.. .. .+.....++
T Consensus 241 ~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~ 320 (496)
T PRK15238 241 EKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTLGVWFARIT 320 (496)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhhhHHHHHHH
Confidence 99999999999999999999988888888877664321 1110 00 011223467
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc---cc------ccchhh
Q 002018 445 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII---GN------LDLITP 515 (980)
Q Consensus 445 ~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~---~~------~~~l~~ 515 (980)
+++++++.+++.++.+++.+|.+++.++||++|++ +.+++|+|+|++|++++++++.++.++ +. ++++.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~-f~k~nk~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~ 399 (496)
T PRK15238 321 GLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKK-MTKLNKNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTL 399 (496)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHH-HHhhCcCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 88899999999999999999999999999999996 678889999999999998887655322 21 678999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc-h----hhHHHHHHHHHHHH
Q 002018 516 TITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH-H----WSLSLLGSVFCIVI 565 (980)
Q Consensus 516 i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~-~----~~~~l~g~i~~~~~ 565 (980)
+.++..++.|++++++++++|+ +|+.+++|+.+ + ++.++++.+.+++.
T Consensus 400 l~~~~~li~y~~~~~a~i~~r~--~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (496)
T PRK15238 400 MANVSMTLPYLFLAGAFPFFKK--KKDIDRPFVVFKTKKSTLIATIVVVLVVGFA 452 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--ccCCCCCceecCCcceehhHHHHHHHHHHHH
Confidence 9999999999999999999986 46666666653 2 24444444444443
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=3e-33 Score=327.23 Aligned_cols=372 Identities=20% Similarity=0.303 Sum_probs=281.3
Q ss_pred hhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHH-HHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHH
Q 002018 146 NILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCT-FLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGN 224 (980)
Q Consensus 146 ~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~-~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~ 224 (980)
.++|++.|... ..+.+|+. .++.|++++++. ++.+++|+|+++. +|++||.|.|+++.+||.+|+..||.+++++
T Consensus 13 ~~~g~gi~~~~--~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~ 88 (426)
T PF13520_consen 13 SIIGSGIFFSP--AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAGGIYVWVSRAFGPFWGFIVGWLYWVAY 88 (426)
T ss_dssp CHHTTTTTTHH--HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSSTTHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcCeeeehhhhcccccchhcccceeEEEe
Confidence 35677766654 66678886 566788887777 8999999999998 9999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHH
Q 002018 225 AVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLI 304 (980)
Q Consensus 225 ~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~ 304 (980)
....+.....+++++...+... . .+..+...+++++++++++++|++|+|..++++.++.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~-~------------------~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 149 (426)
T PF13520_consen 89 ILSLASVASSFASYLLSLFGPD-L------------------NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTV 149 (426)
T ss_dssp HHHHHHHHHHHHHHHTTTTTGG-G------------------TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred eccccccccchhhhhhhccccc-c------------------ccccchheeeeecccccceEeeechhhhhhhhhhhhhh
Confidence 9999888888999987665321 0 11123445778888899999999999999999999999
Q ss_pred HHH-HHHH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHh
Q 002018 305 PVL-LSIF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS 382 (980)
Q Consensus 305 ~~i-l~i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a 382 (980)
+++ ..++ ++++++.....+. +.. . ...+ +.+. +.+ ..+++.++...+|+|.|+|+++
T Consensus 150 ~~i~~~l~~~i~~~~~~~~~~~----~~~---~--~~~~-~~~~---------~~~--~~~~~~~~~~~~~~~~G~e~~~ 208 (426)
T PF13520_consen 150 IKIVIPLLVLIILGIVSFSFSG----FNS---L--SFSL-STFF---------PSG--WPGFLAGFSVAFFAFSGFEAIA 208 (426)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCH----HH---------SH-SCSS---------CSS--SSHHHHHHHHHGGGGTTTTHHH
T ss_pred hhhhhhhhhheeEEEeeecccc----ccc---c--cccc-cccC---------Ccc--ccchhhHHHHHHhhcccccccc
Confidence 998 4555 3444544322110 000 0 0000 0111 111 1136788899999999999999
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-h-------hhHhhccCchHHHHHHHHHHHHHH
Q 002018 383 NRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD-R-------LLTATIAWPFPAVIHIGIILSTLG 454 (980)
Q Consensus 383 ~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~-~-------~~~~~~~~~~~~ii~~~il~s~ls 454 (980)
+++||.|| |++|||+..+++.+.++|++..+.+....|.++...+ + +.....+.+...++.+++++++++
T Consensus 209 ~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 286 (426)
T PF13520_consen 209 SLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFG 286 (426)
T ss_dssp HGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHH
T ss_pred cccccccc--hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccccccccccccccccccccc
Confidence 99999777 8999999999999999999988888888777765432 1 112233456788999999999999
Q ss_pred HHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhc-c-----ccccchhhhhHHHHHHHHHHH
Q 002018 455 AALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVI-I-----GNLDLITPTITMFFLLCYSGV 528 (980)
Q Consensus 455 s~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l-~-----~~~~~l~~i~s~~~ll~y~~i 528 (980)
+.++.+.+++|++++|||||.+|++ +.+++|+++|++|+++.++++.++.+ + .+++.+.+..++..++.|.+.
T Consensus 287 ~~~~~~~~~sR~l~~~a~d~~lP~~-~~~~~k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 365 (426)
T PF13520_consen 287 SINAFIFGASRLLYAMARDGVLPKW-FAKVNKFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILV 365 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSGG-GGTTSSSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHH
T ss_pred ccchhhcchhhcccccccccchhhh-hhhccccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999986 77777999999999999999855432 2 257889999999999999999
Q ss_pred HHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHH
Q 002018 529 NLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMF 567 (980)
Q Consensus 529 ~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~ 567 (980)
.++++++|++ +|+.+| ..+.+.+++++++.+++...
T Consensus 366 ~~~~~~~~~~-~~~~~r--~~~~~~~~i~~~~~~~~~~~ 401 (426)
T PF13520_consen 366 ILAVLFLRRK-RPDLKR--IPYRPPVGIIGIIIILFVII 401 (426)
T ss_dssp HHHHHHTHHH-SCSSGH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhh-cCCcCC--CCcchHHHHHHHHHHHHHHH
Confidence 9999999984 444433 11124455555555554443
No 39
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1e-32 Score=326.39 Aligned_cols=375 Identities=21% Similarity=0.326 Sum_probs=287.8
Q ss_pred ccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCc
Q 002018 131 VKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGP 210 (980)
Q Consensus 131 ~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp 210 (980)
+++|.+.........+++|.++|...+.....+ +...+. |++++++..+++++++|+++. +|++||.|.|+++.+||
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~-~li~~~~~~~~a~~~~el~~~-~p~~GG~y~~~~~~~g~ 88 (466)
T COG0531 12 KKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILA-WLIAGIIILFLALSYAELSSA-IPSAGGAYAYAKRALGP 88 (466)
T ss_pred CCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHH-HHHHHHHHHHHHHHHHHHHhc-CCCCCCeeeehhhhcCc
Confidence 445555444333334455666676666666655 444444 999999999999999999996 99999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 002018 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (980)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~ 290 (980)
.+|+.+||.+++++.+..+.....++.++...+|..+.+ ..+. +...+++.+++++++++|++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-~~~~~~~~~~~~~~~~ln~~ 151 (466)
T COG0531 89 RLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLL----------------SIGP-LLIILIALALIALLTLLNLR 151 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh----------------cCCc-hHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999998888877743100 0111 44567888899999999999
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHhhh-eeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHH
Q 002018 291 GVKIINRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVG 369 (980)
Q Consensus 291 Gvk~~~~~~~~~~~~~il~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~ 369 (980)
|+|..++++.+..+++++.++.+++ +++...... .+....+.. .+..+..+..++.
T Consensus 152 G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~--------------~~~~~~~~~---------~~~~~~~~~~~~~ 208 (466)
T COG0531 152 GIKASAKINSIITILKIIILLIFIILGLFAFGFSN--------------GNLFAPFNP---------GGGSFGGILAAIL 208 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--------------cccCCCccc---------ccchHHHHHHHHH
Confidence 9999999999999999988884444 443322211 011111110 0112335888899
Q ss_pred HHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh----hhhhHh---hccCchHH
Q 002018 370 LFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT----DRLLTA---TIAWPFPA 442 (980)
Q Consensus 370 ~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~----~~~~~~---~~~~~~~~ 442 (980)
..+|+|.|+|.+++.+||+|||+|++|||++.+++.++++|++..+.+....+.++... .++... ..+.....
T Consensus 209 ~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~ 288 (466)
T COG0531 209 LAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAI 288 (466)
T ss_pred HHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHH
Confidence 99999999999999999999999999999999999999999998887777777654332 333221 22234678
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCC-CCCchhhHHHHHHHHh-hhhccc----cccchhhh
Q 002018 443 VIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE-GREPHIATFFTAFICI-GCVIIG----NLDLITPT 516 (980)
Q Consensus 443 ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~-~g~P~~Aill~~~i~~-l~~l~~----~~~~l~~i 516 (980)
++.+.++++++++.++...+.+|++++|||||.+|+. +.++++ +++|++|++++.++++ ++.... .++.+..+
T Consensus 289 ~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP~~-~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~ 367 (466)
T COG0531 289 IIAILALLSLFGSLLAWILAVSRVLYAMARDGLLPKF-FAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSL 367 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHH-HHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 9999999999999999999999999999999999995 666665 5799999999999998 333322 36889999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccc
Q 002018 517 ITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFH 550 (980)
Q Consensus 517 ~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~ 550 (980)
.+..+++.|.+.+++.+.+|++ .|+.+++++.+
T Consensus 368 ~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~ 400 (466)
T COG0531 368 ASVAFLIAYLLVALALLVLRRK-KPDLKRPFRLP 400 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCCCCCccccc
Confidence 9999999999999999999984 55555655554
No 40
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.86 E-value=1e-19 Score=209.72 Aligned_cols=346 Identities=12% Similarity=0.061 Sum_probs=241.4
Q ss_pred hhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHH
Q 002018 145 QNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGN 224 (980)
Q Consensus 145 ~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~ 224 (980)
.+++|+|+|...+...+.+++ .+++..+++++++++++++++|++++ +|++||.|.|+++.+|+..|+.+||.+++..
T Consensus 8 gt~IGaGIl~lP~~~a~~g~~-~~~~~~i~~~~~~~~~~l~~~el~~~-~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~ 85 (381)
T TIGR00837 8 GTTIGAGMLALPTSTAGAWFI-WTLLLLILLWFLMLHSGLLLLEVYLT-YPGGASFNTIAKDLLGKTGNIIAGLSLLFVL 85 (381)
T ss_pred hhhHhHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 356799988888876654444 44556788999999999999999998 9999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHH
Q 002018 225 AVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLI 304 (980)
Q Consensus 225 ~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~ 304 (980)
...++.|+.+...++...++... .. ..+..+.++++.+++..+|+.|+|..++++.+++.
T Consensus 86 ~~~~~ay~~~~~~~l~~~~~~~~-------------------~~-~~~~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~ 145 (381)
T TIGR00837 86 YILTYAYISGGGSILSRLIGEYF-------------------GF-PWSARAIVLIFTVLFGSFVWLSTSAVDRITRVLIF 145 (381)
T ss_pred HHHHHHHHHccHHHHHHHHHHhc-------------------CC-CccHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 88888888888888777665320 00 11233566677778889999999999999999999
Q ss_pred HHHHHHHHhhh-eeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHH-HHh
Q 002018 305 PVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIM-AGS 382 (980)
Q Consensus 305 ~~il~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~e-a~a 382 (980)
++++.++.+++ ++.... .+|+.|.... +. ...++..++...+++| |++ ...
T Consensus 146 ~~l~~l~~~ii~~~~~~~----------------~~~~~~~~~~--------~~--~~~~~~~a~~~~~~~f-g~~~~i~ 198 (381)
T TIGR00837 146 GKIIAFALVFSGLLPHVK----------------GDLLLDVALD--------TS--YWPYILSALPVCLTSF-GFHGNVP 198 (381)
T ss_pred HHHHHHHHHHHHHHhhcc----------------HHHHhcCccc--------cc--cHHHHHHHHHHHHHHH-HcccccH
Confidence 88887774443 332111 1233221000 00 1234667777888888 565 577
Q ss_pred hhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--------hhhh---Hhhcc-CchHHHHHHHHHH
Q 002018 383 NRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--------DRLL---TATIA-WPFPAVIHIGIIL 450 (980)
Q Consensus 383 ~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--------~~~~---~~~~~-~~~~~ii~~~il~ 450 (980)
...+|.++++|++||+++.++.+++++|++..+......|++++.. +++. ....+ +....++.++.++
T Consensus 199 ~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~ 278 (381)
T TIGR00837 199 SLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNF 278 (381)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 7889998789999999999999999999987776666666766531 1111 11122 2346788888899
Q ss_pred HHHHHHHHHhhhhHHHHHHH-hcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccccccchhhhhHHHHHHHHHHHH
Q 002018 451 STLGAALQSLTGAPRLLAAI-ANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVN 529 (980)
Q Consensus 451 s~lss~~s~l~~asR~L~al-ArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ll~y~~i~ 529 (980)
+..++.++..++.++-+..+ .+++ ++++ |..+.+++.+..+++........+..+...+++.++....
T Consensus 279 al~tS~~g~~l~~~d~l~~~~~~~~----------~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~ 347 (381)
T TIGR00837 279 ALASSFLGVTLGLFDYLADLFKFDD----------SKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVI 347 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCc----------ccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888555432 1111 1223 6677788877777666555555556666666667766666
Q ss_pred HHHHHhhhc--CCCCCCCCCccchh
Q 002018 530 LSCFLLDLL--DAPSWRPRWKFHHW 552 (980)
Q Consensus 530 la~~~~r~~--~~p~~r~~f~~~~~ 552 (980)
+.++..++. +.|+ ++||.|+.
T Consensus 348 ~p~l~~~~~r~~~~~--~~~~~~~~ 370 (381)
T TIGR00837 348 IPALLAWKARKKFPN--AGYRVWGG 370 (381)
T ss_pred HHHHHHHHHHhcCCC--CCccccCC
Confidence 666655332 2233 47887743
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.58 E-value=1.4e-12 Score=149.29 Aligned_cols=270 Identities=14% Similarity=0.089 Sum_probs=191.0
Q ss_pred chhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHH
Q 002018 144 LQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLG 223 (980)
Q Consensus 144 ~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~ 223 (980)
..+++|++++...+...+.+|+ .+++++++++++.++.+++++|++++ +|.. |.|.|..+.+|+..|+..+|.|++.
T Consensus 13 ~~~~iG~gil~~P~~~~~~a~~-~~wi~~ll~~~~~~~~~~~~~~l~~~-~p~~-~~~~~~~~~~Gk~~g~~~~~~~~~~ 89 (359)
T TIGR00912 13 SSTMIGSGLLTLPALVSQSAGQ-DGWISIILGGLIIIFLLCLMIKIMSK-FPEK-NFSEILSKYLGKILGRLLSILFILY 89 (359)
T ss_pred HHHHHHHHHHhhhHHHHhccCC-CeeHHHHHHHHHHHHHHHHHHHHHHH-CCCC-CHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3457799989888888888886 45789999999999999999999998 9976 6999999999999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHhc-cCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHH
Q 002018 224 NAVAGAMYVLGAVETFLKAV-PAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTF 302 (980)
Q Consensus 224 ~~~~~a~~~~~~~~~l~~~~-p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~ 302 (980)
.....+.....+++++...+ |. .+..+++.+++++++.++..|++..+|++.++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~-------------------------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~ 144 (359)
T TIGR00912 90 FFLIAAYLIRIFADFIKTYLLPR-------------------------TPIIVIIILIIIVSIYIVRKGIEVLLRTAEIL 144 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC-------------------------CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 77777777767777765543 21 12235666777778888999999999999998
Q ss_pred HHHHHHHH-HHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHH-HHHHhhHHHHH
Q 002018 303 LIPVLLSI-FCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVG-LFFPAVTGIMA 380 (980)
Q Consensus 303 ~~~~il~i-~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~-~~~~a~tG~ea 380 (980)
..++++.. +.++.... ... + .+|+.|-+.. | ...++.+.. ..+++|.|+|.
T Consensus 145 ~~~~i~~~~~il~~~~~--~~~---------~----~~~l~P~~~~----------g--~~~~~~~~~~~~~~~f~g~~i 197 (359)
T TIGR00912 145 LIIFLILFILVLILLAP--KLG---------N----IKNLLPVLEN----------G--LSPILKGAYPVVTFAFGEIEI 197 (359)
T ss_pred HHHHHHHHHHHHHHHhc--ccc---------c----HHHccCcccc----------C--cHHHHhhhhHHhhhhhHHHHH
Confidence 87776653 32222111 100 0 2344443321 1 123444443 67789999999
Q ss_pred HhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh--hhhHh--hccCc-----hHHHHHHHHHHH
Q 002018 381 GSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLTA--TIAWP-----FPAVIHIGIILS 451 (980)
Q Consensus 381 ~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~--~~~~~--~~~~~-----~~~ii~~~il~s 451 (980)
.....++.|||+ ++||++..++.+++++|++..+..-...+.+..... |.... ....+ ...++...-+.+
T Consensus 198 ~~~~~~~~~~~~-~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~ 276 (359)
T TIGR00912 198 FFLLFPLLSKKK-KIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFI 276 (359)
T ss_pred HHHHHHHhCChh-hhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHH
Confidence 999999999975 699999999999999999876665555555554322 22211 11111 124455555666
Q ss_pred HHHHHHHHhhhhHHHHHH
Q 002018 452 TLGAALQSLTGAPRLLAA 469 (980)
Q Consensus 452 ~lss~~s~l~~asR~L~a 469 (980)
.+.....+++.+.+.+..
T Consensus 277 ~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 277 IFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777888888887654
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.56 E-value=4.4e-12 Score=143.31 Aligned_cols=333 Identities=14% Similarity=0.098 Sum_probs=216.7
Q ss_pred hhhHhhhhhhhhhcccch--hHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHH
Q 002018 148 LGIIYYIRFTWIVGMGGI--GDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (980)
Q Consensus 148 ~G~~lFl~~g~~lg~aG~--~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~ 225 (980)
+|.|-++-.+.+-.++|- ..++++|+++++..-+.++. + .|++||.|.+..+.+||.+|+..+|..++..-
T Consensus 9 fGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------a-v~~~gG~~~~l~~~~g~~f~~lf~~~~~l~iG 81 (378)
T TIGR00796 9 FGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------A-LALVGGGYDSLSARIGKVFGILFTVILYLTIG 81 (378)
T ss_pred HhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------e-eeecCCCHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 466667666666666653 45677899999988777765 4 78999999999999999999999998776553
Q ss_pred HHHHH--HHHHHHH-HHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHH
Q 002018 226 VAGAM--YVLGAVE-TFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTF 302 (980)
Q Consensus 226 ~~~a~--~~~~~~~-~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~ 302 (980)
-..+. .+...-| .+...+|.. .......++.+++..+...+|+.+.|...+++.++
T Consensus 82 P~~aiPRtaa~s~e~~i~p~~~~~---------------------~~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~L 140 (378)
T TIGR00796 82 PLFAIPRTATVSFEMGIAPLLHSP---------------------TSLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFL 140 (378)
T ss_pred hchhhhHHHHHHHHHHHHhccCcc---------------------cchHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHH
Confidence 22211 1111111 122223320 00122235677777777889999999999999999
Q ss_pred HHHHHHHHHHhh-heeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhH-----
Q 002018 303 LIPVLLSIFCIF-VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVT----- 376 (980)
Q Consensus 303 ~~~~il~i~~ii-ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~t----- 376 (980)
+-++++.++.++ .|++.. .+..... ...|.. + ..|..++.-.+.++-
T Consensus 141 TP~lLi~l~~lii~g~~~p-~g~~~~~-------------~~~~~~----------~---~~f~~g~l~GY~TmD~laal 193 (378)
T TIGR00796 141 TPALLVTLLALIIKALLWP-AGPILAA-------------SGAYAS----------Q---QAFSKGFLEGYLTMDALAAL 193 (378)
T ss_pred HHHHHHHHHHHHHHHHHcC-CCCcCCc-------------cccccc----------c---cHHHHHHHHHHHHHHHHHHH
Confidence 999999888544 465432 2111000 000100 0 024444555555555
Q ss_pred --HHHHHhhhcc-cccccccchhHHHHHHH-HHHHHHHHHHHHHHhhccchhhhh----hh----hhhHhhccCchHHHH
Q 002018 377 --GIMAGSNRSA-SLKDTQRSIPIGTLAAT-LTTTALYVISVLLFGAAATREELL----TD----RLLTATIAWPFPAVI 444 (980)
Q Consensus 377 --G~ea~a~~a~-E~knP~ksIP~a~~~si-~~~~v~Yil~~~~~g~~~~~~~~~----~~----~~~~~~~~~~~~~ii 444 (980)
|+-.+.+..+ |.|||+|..|+.++.++ ..+.+.|+...+.+....+.+... .. ......+|.....++
T Consensus 194 ~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll 273 (378)
T TIGR00796 194 VFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLL 273 (378)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHH
Confidence 6666666666 99999999999999998 666666775444433333322221 11 223345666667899
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccccccchhhhhHHHHHHH
Q 002018 445 HIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLC 524 (980)
Q Consensus 445 ~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ll~ 524 (980)
.+.++++|++++++-+.++++.+..+ ++ +.|+++.++...+...++....+|.+..++.-...+.
T Consensus 274 ~i~v~lACLtT~iGli~~~a~~f~~~-------------~~--k~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~ 338 (378)
T TIGR00796 274 GLIITLACLTTAVGLTTACSEYFHKL-------------VP--KLSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMII 338 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-------------cC--CCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 99999999999999999988754332 12 2799999988888877777788999999887777777
Q ss_pred HHHHHHHHHH--hhhcCCCCCCCCCccch
Q 002018 525 YSGVNLSCFL--LDLLDAPSWRPRWKFHH 551 (980)
Q Consensus 525 y~~i~la~~~--~r~~~~p~~r~~f~~~~ 551 (980)
|-..-...+. +|+ +.|+.+++||.+-
T Consensus 339 YP~~i~lill~ll~~-~~~~~~~~y~~~~ 366 (378)
T TIGR00796 339 YPLAIVLILLSFLRK-LWDSKRAVYQITL 366 (378)
T ss_pred HHHHHHHHHHHHHHH-hcCCCCCeeehHH
Confidence 7433333333 444 4566677777643
No 43
>PHA02764 hypothetical protein; Provisional
Probab=99.49 E-value=2.1e-12 Score=135.48 Aligned_cols=239 Identities=15% Similarity=0.184 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 002018 167 DSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAA 246 (980)
Q Consensus 167 ~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~ 246 (980)
..+++|+++++++++.+++++|++++ +|++||.|.|++|++||.+|+..||.+|+.+.+..|...- .+.+. +.-
T Consensus 47 nlLLAWLLGGLlALPgAL~YAELGSA-mPrAGGdYVYISRAFGP~~GFLvG~a~WLtl~~G~Pal~~--l~~~~--~~i- 120 (399)
T PHA02764 47 NLLFAILIGAVFEIPLLLMYYKLTTK-FPLNGGDYAYIRTAFSSKFYTIFGISLWLTYVLSQPILGD--LVLLN--FNI- 120 (399)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCceEEEhHHhhCccHHHHHHHHHHHHHHhhcchhhh--eeeee--eee-
Confidence 36789999999999999999999998 9999999999999999999999999999998877664221 11100 000
Q ss_pred CcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCC
Q 002018 247 GMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPA 326 (980)
Q Consensus 247 ~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~ 326 (980)
.+......+.-. +..+..+-..|.+.+.|.-.++.... ++++++...+.
T Consensus 121 --------------------~~~~~~f~~~~s--~~~i~~~i~~~~~~~~~~v~il~~a~------~i~aif~~~~s--- 169 (399)
T PHA02764 121 --------------------QNQFEQFLIVES--LFPIVLLIIANKKIYAKIVDILAIAQ------IIIAIFIAFKS--- 169 (399)
T ss_pred --------------------HHHHHHHHHHHH--HHHHHHHHHcccHHHHHHHHHHHHHH------HHHHHHhhccc---
Confidence 000011111111 12222333456788887655533222 22333222210
Q ss_pred CCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHH
Q 002018 327 PGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTT 406 (980)
Q Consensus 327 ~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~ 406 (980)
++.. .+| |+-. -....+......+|.=+++....++|.||-+|+-..|-..+...+
T Consensus 170 -----~n~~--~~~----f~~s-------------nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~ 225 (399)
T PHA02764 170 -----FNFQ--YQN----FTIS-------------NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIV 225 (399)
T ss_pred -----eeEE--Ecc----eeeh-------------HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHH
Confidence 0000 111 2111 123444444455777799999999999999999988888877766
Q ss_pred HHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCC
Q 002018 407 TALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE 486 (980)
Q Consensus 407 ~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~ 486 (980)
.++-+.-. +..+ .+..+....-.+|-.....--.||+.++||-|+.+|. +|.|. +
T Consensus 226 ~~~~ii~s--------y~n~---------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lpe-~f~k~-~ 280 (399)
T PHA02764 226 AILSIIDS--------YSNL---------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLPE-KFSKI-N 280 (399)
T ss_pred HHHHHHHh--------hhhH---------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhhhchH-HHhcc-C
Confidence 65544311 1110 1111112222233333344568999999999999998 35544 4
Q ss_pred CCCch
Q 002018 487 GREPH 491 (980)
Q Consensus 487 ~g~P~ 491 (980)
.++|.
T Consensus 281 ~nv~~ 285 (399)
T PHA02764 281 PNVLL 285 (399)
T ss_pred CCcee
Confidence 57777
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.33 E-value=1.5e-09 Score=124.75 Aligned_cols=267 Identities=14% Similarity=0.141 Sum_probs=189.2
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002018 156 FTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGA 235 (980)
Q Consensus 156 ~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~ 235 (980)
++...+.+|...+++..+++..+++.+++.++|+..+ .+++-+.-.++++.+|+..+..++..|++-.-.....|+.+.
T Consensus 24 LP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~-~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~ 102 (394)
T PF03222_consen 24 LPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLN-TPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGG 102 (394)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456677898888889999999999999999999998 889899999999999999999999999888877888899999
Q ss_pred HHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhh
Q 002018 236 VETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV 315 (980)
Q Consensus 236 ~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iii 315 (980)
++.+.+.++.... ...+......++.+++..+.+.|.|...|++.++...++++++.+++
T Consensus 103 g~~~~~~l~~~~~--------------------~~~~~~~~~~~f~~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~~ 162 (394)
T PF03222_consen 103 GSILSSLLGNQLG--------------------TDLSPWLSSLLFTIIFGGIVYFGTKAVDRINRVLVFGMIISFIILVV 162 (394)
T ss_pred HHHHHHHHHHhcC--------------------CCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888887664310 11223456666777777788999999999999998888887775544
Q ss_pred eeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccch
Q 002018 316 GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSI 395 (980)
Q Consensus 316 g~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksI 395 (980)
..+-.. + .+|... ..+ ........+.++.+.++||.-...+..+....++-+|.+
T Consensus 163 ~~~p~~-----------~----~~~L~~-~~~---------~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~ 217 (394)
T PF03222_consen 163 YLIPHW-----------N----PSNLLD-APP---------SPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKI 217 (394)
T ss_pred HHhhhc-----------C----HHHhhc-ccc---------ccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHH
Confidence 332110 0 112111 000 011233466788888889998888888888888768889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhhhh-----h---hhhhHh---hc-cCchHHHHHHHHHHHHHHHHHHHhhhh
Q 002018 396 PIGTLAATLTTTALYVISVLLFGAAATREELL-----T---DRLLTA---TI-AWPFPAVIHIGIILSTLGAALQSLTGA 463 (980)
Q Consensus 396 P~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~-----~---~~~~~~---~~-~~~~~~ii~~~il~s~lss~~s~l~~a 463 (980)
.|+++.+..+..++|++-.+.+....|+++.. + +.+... .. ++....+..+..+++..+|-.+...+.
T Consensus 218 ~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl 297 (394)
T PF03222_consen 218 RKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998666555566665431 1 111111 11 222345556666666666666666665
Q ss_pred HHHHH
Q 002018 464 PRLLA 468 (980)
Q Consensus 464 sR~L~ 468 (980)
...+.
T Consensus 298 ~d~l~ 302 (394)
T PF03222_consen 298 FDFLA 302 (394)
T ss_pred HHHHH
Confidence 55543
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.21 E-value=4.1e-09 Score=120.99 Aligned_cols=282 Identities=13% Similarity=0.096 Sum_probs=184.8
Q ss_pred chhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cCchhhhHHHHhCchhhHHHHHHHHH
Q 002018 144 LQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMK-GGGPYYLIGRALGPEVGVSIGLCFFL 222 (980)
Q Consensus 144 ~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~-~GG~y~~~sr~lgp~~Gf~~Gw~~~l 222 (980)
..+++|+|++.... ..++.|....+++.+++..+++.....+.|.... .+. +++.+.++++.+|+..|...++.|++
T Consensus 13 ~gt~IGaGiL~LP~-~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~-~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~ 90 (397)
T TIGR00814 13 YGTAIGAGVLFLPI-QAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLS-SKNPCEDITEVVEEHFGKNWGILITLLYFF 90 (397)
T ss_pred HHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34466888766555 4677776666666677777777777778888665 554 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHH
Q 002018 223 GNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTF 302 (980)
Q Consensus 223 ~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~ 302 (980)
.....+..|+.+..+.+.+.+...- ..+.....+.+.++++++..++..|.|..+|++.++
T Consensus 91 ~~~~i~~aY~~~~~~~~~~fl~~~~-------------------~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il 151 (397)
T TIGR00814 91 AIYPILLIYSVAITNDSASFLVNQL-------------------GTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPL 151 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-------------------CCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 9999999999988888777654310 011112225666677777889999999999999998
Q ss_pred HHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHh
Q 002018 303 LIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGS 382 (980)
Q Consensus 303 ~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a 382 (980)
...+++.++.+.+..+ +. ++ .+|+... .. .+.....++.+....++||.|.|.++
T Consensus 152 ~~~~ii~l~~l~~~li--p~---------~~----~~~L~~~-p~---------~~~~~~~i~~alpv~~~SF~~~~iIs 206 (397)
T TIGR00814 152 VFPLVLILVLLSLYLI--PH---------WN----GANLTTF-PS---------FNGFLKTLWLTIPVMVFSFNHSPIIS 206 (397)
T ss_pred HHHHHHHHHHHHHHHH--HH---------cC----HHHHhcC-Cc---------ccchHHHHHHHHHHHHHHHHccccch
Confidence 8777666664433221 10 01 1222110 00 01123457888999999999999999
Q ss_pred hhc----cccccc---ccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh---h--hhhH---hhccCc-hHHHHHH
Q 002018 383 NRS----ASLKDT---QRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT---D--RLLT---ATIAWP-FPAVIHI 446 (980)
Q Consensus 383 ~~a----~E~knP---~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~---~--~~~~---~~~~~~-~~~ii~~ 446 (980)
.++ +|.+|| +|.+-|++..+..+..++|++-.+......++++... + +... .....+ ...+..+
T Consensus 207 sl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~ 286 (397)
T TIGR00814 207 SFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPI 286 (397)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHH
Confidence 998 677755 5777788888888999999986666555556665421 1 1111 111222 2233333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHh
Q 002018 447 GIILSTLGAALQSLTGAPRLLAAIA 471 (980)
Q Consensus 447 ~il~s~lss~~s~l~~asR~L~alA 471 (980)
...++..+|-.+..+++.--+..+-
T Consensus 287 f~~~Ai~tSFlG~~lg~~e~l~~l~ 311 (397)
T TIGR00814 287 VAIVAISKSFFGHYLGAREGLNGIV 311 (397)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344555555555555555555555
No 46
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.11 E-value=4.3e-08 Score=113.53 Aligned_cols=224 Identities=14% Similarity=0.174 Sum_probs=171.3
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC-chhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHH
Q 002018 156 FTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGG-GPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLG 234 (980)
Q Consensus 156 ~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~G-G~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~ 234 (980)
++...+.+|....++..++++.++++....++|.... .|... +.+..+++.+||.++..++..+++.....+..|.++
T Consensus 30 lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~-~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~ 108 (415)
T COG0814 30 LPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLS-SPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVG 108 (415)
T ss_pred hhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 4557778899999999999999999999999999998 99885 999999999999999999999999998888999999
Q ss_pred HHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhh
Q 002018 235 AVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF 314 (980)
Q Consensus 235 ~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~ii 314 (980)
.++.+...++.... ..+ .+..+...++.+++..+.+.|.+..-|...++...+++.++++.
T Consensus 109 ~g~~l~~~~~~~~~------------------~~~-~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~ 169 (415)
T COG0814 109 IGNLLASFLGNQFG------------------LNP-LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLV 169 (415)
T ss_pred chhHHHHHHHhhcc------------------cCC-cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 98888877664200 000 34456777777788889999999999999888888777776555
Q ss_pred heeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccc
Q 002018 315 VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRS 394 (980)
Q Consensus 315 ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ks 394 (980)
+..+.... .++... ... ........++.++.+++++|++.-.+..+..|.+++.+.
T Consensus 170 ~~~~~~~~---------------~~~l~~-~~~--------~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~ 225 (415)
T COG0814 170 VYLIPHWN---------------PANLFA-LPS--------ASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKK 225 (415)
T ss_pred HHHhcccC---------------HHHHhc-ccc--------cchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhH
Confidence 44321111 011100 000 000112358888999999999999999999999988776
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 002018 395 -IPIGTLAATLTTTALYVISVLLFGAAATR 423 (980)
Q Consensus 395 -IP~a~~~si~~~~v~Yil~~~~~g~~~~~ 423 (980)
++|++..+.....++|++..+....+.+.
T Consensus 226 ~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~ 255 (415)
T COG0814 226 AVRKAILIGSLIALVLYILVGFFVFGCFGS 255 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999999999999999865544444443
No 47
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.09 E-value=1e-07 Score=109.26 Aligned_cols=266 Identities=14% Similarity=0.084 Sum_probs=177.3
Q ss_pred hhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 002018 156 FTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGA 235 (980)
Q Consensus 156 ~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~ 235 (980)
++-..+.+|...+++..+++..++..+++-++|.... +|.+-+...++++.+|+..++.++..|++..-.....|+.+.
T Consensus 24 LPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~-~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~ 102 (403)
T PRK15132 24 MPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH-VPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA 102 (403)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3556677898888888888989899999999998886 888888999999999999999999999988888888999997
Q ss_pred HHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhh
Q 002018 236 VETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFV 315 (980)
Q Consensus 236 ~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iii 315 (980)
.+.+...++.. + + .+. +.....+++.++...+.+.|.|...|++.++...+++.++..++
T Consensus 103 g~il~~~l~~~--~--------~---------~~i-~~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~~~ii~~~~~~~ 162 (403)
T PRK15132 103 GELLASSISDW--T--------G---------ISM-SPTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFSAKIIFLVVMLA 162 (403)
T ss_pred HHHHHHHHHHh--c--------c---------CCC-ChHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665554321 0 0 000 11244556666666688889999999999988887777664433
Q ss_pred eeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccch
Q 002018 316 GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSI 395 (980)
Q Consensus 316 g~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksI 395 (980)
.++ +. .+ .+|+... +. +.. ..+.++.+.++||.=-..+..+..-.++-.|.+
T Consensus 163 ~l~--p~---------~~----~~~L~~~--~~---------~~~--~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~ 214 (403)
T PRK15132 163 LMM--PH---------IH----KVNLLTL--PL---------QQG--LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKL 214 (403)
T ss_pred HHH--Hh---------cC----HHHHhcC--Cc---------ccc--HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHH
Confidence 321 10 01 1222110 00 000 255667777777776667777777777777899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh---h-----hhhHh---hcc-CchHHHHHHHHHHHHHHHHHHHhhhh
Q 002018 396 PIGTLAATLTTTALYVISVLLFGAAATREELLT---D-----RLLTA---TIA-WPFPAVIHIGIILSTLGAALQSLTGA 463 (980)
Q Consensus 396 P~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~---~-----~~~~~---~~~-~~~~~ii~~~il~s~lss~~s~l~~a 463 (980)
.|+++.+..+..++|++-.+.+....|+++... + +.... ..+ .....++.+...++..+|-.+...+.
T Consensus 215 ~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl 294 (403)
T PRK15132 215 RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGL 294 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999986665555556664311 1 11111 111 22334555555556666666666666
Q ss_pred HHHHHHH
Q 002018 464 PRLLAAI 470 (980)
Q Consensus 464 sR~L~al 470 (980)
..-+..+
T Consensus 295 ~d~l~d~ 301 (403)
T PRK15132 295 FDYLADL 301 (403)
T ss_pred HHHHHHH
Confidence 6555554
No 48
>PRK10483 tryptophan permease; Provisional
Probab=99.08 E-value=9.7e-08 Score=109.01 Aligned_cols=232 Identities=14% Similarity=0.129 Sum_probs=159.0
Q ss_pred hhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHH
Q 002018 148 LGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVA 227 (980)
Q Consensus 148 ~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~ 227 (980)
+|.|++ .++.+.+.+|-..+++..+++.+++..+++.+.|...+ +|.+-+.-.++++.+|+.+....+..+.+-.-..
T Consensus 25 IGaGML-aLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~-~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~L 102 (414)
T PRK10483 25 IGAGMF-SLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLN-YRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL 102 (414)
T ss_pred HhHHHH-HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence 355443 34556677888888889999999999999999999998 8988889999999999987766666655444455
Q ss_pred HHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH
Q 002018 228 GAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVL 307 (980)
Q Consensus 228 ~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~i 307 (980)
...|+.+..+.+.+.++..++ ..+..+-++++.+++..+.+.|.|...|++.++...++
T Consensus 103 l~AYisg~g~il~~~l~~~~~---------------------~i~~~~~~llF~~~~~~iv~~gt~~vd~~n~~l~~~~i 161 (414)
T PRK10483 103 TYAYISASGSILHHTFAEMSL---------------------NVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAKV 161 (414)
T ss_pred HHHHHhCcHHHHHHHHHhcCC---------------------CCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667788888888777653210 01223566778888888899999999999999998888
Q ss_pred HHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhccc
Q 002018 308 LSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSAS 387 (980)
Q Consensus 308 l~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E 387 (980)
+.++..+.+++-... .+|+.+. ... .+......+.++.+.++||.=-..+..+...
T Consensus 162 ~~f~~~~~~l~~~i~---------------~~~L~~~-~~~--------~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y 217 (414)
T PRK10483 162 ITFFLTFGSLLGHVQ---------------PATLFNV-AES--------NASYAPYLLMTLPFCLASFGYHGNVPSLMKY 217 (414)
T ss_pred HHHHHHHHHHHhhcC---------------HHHHhcc-ccc--------cchhHHHHHHHHHHHHhhccCCCcchHHHHH
Confidence 877755544321100 0111110 000 0000112456666677777655666666666
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 002018 388 LKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL 426 (980)
Q Consensus 388 ~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~ 426 (980)
.++=.|.+.|+++.+..+..++|++-.+.+....|+++.
T Consensus 218 ~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~ 256 (414)
T PRK10483 218 YGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEF 256 (414)
T ss_pred hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 664445899999999999999999866655555566653
No 49
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.02 E-value=2.9e-07 Score=105.07 Aligned_cols=234 Identities=9% Similarity=0.028 Sum_probs=155.6
Q ss_pred hhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHH
Q 002018 149 GIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAG 228 (980)
Q Consensus 149 G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~ 228 (980)
|.|++ .++.+.+.+|-..+.+..+++.+++..+++.+.|...+ +|.+-+.-.++++.+|+.+-...+..+++-.-...
T Consensus 24 GAGML-aLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~-~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll 101 (415)
T PRK09664 24 GGGMF-ALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLN-YPVGSSFNTITKDLIGNTWNIISGITVAFVLYILT 101 (415)
T ss_pred hHHHH-HHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 44433 34556677888888889999999999999999999998 89888999999999999766666666544444456
Q ss_pred HHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHH
Q 002018 229 AMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLL 308 (980)
Q Consensus 229 a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il 308 (980)
..|+.+..+.+...++... | ...+..+.++++.+++..+.+.|.|...+++.++...+++
T Consensus 102 ~AYisggG~il~~~l~~~~----------~----------~~i~~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~~~ii 161 (415)
T PRK09664 102 YAYISANGAIISETISMNL----------G----------YHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKII 161 (415)
T ss_pred HHHHhccHHHHHHHHhhhc----------c----------CCCcHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 6788888888877765310 0 0112235567788888889999999999999999888777
Q ss_pred HHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccc
Q 002018 309 SIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASL 388 (980)
Q Consensus 309 ~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~ 388 (980)
.++..+.+..-... .+++.+.-...+ ... .....+.++.+.++||.=--.+..+..-.
T Consensus 162 ~f~~~~~~l~~~i~---------------~~~L~~~~~~~~------~~~-~~~~i~~alPVl~~SFgfh~iIPsl~~y~ 219 (415)
T PRK09664 162 SFVIVFGSFFFQVD---------------YSILRDATSTTA------GTS-YFPYIFMALPVCLASFGFHGNIPSLIICY 219 (415)
T ss_pred HHHHHHHHHhhccc---------------HHHHhcCccccc------cch-HHHHHHHHHHHHHHhhhCCCcchHHHHHh
Confidence 76644433211100 011111000000 000 01124556666666665455555555556
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Q 002018 389 KDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL 426 (980)
Q Consensus 389 knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~ 426 (980)
++=.|.+.|+++....+..++|++-..++....|++++
T Consensus 220 ~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~ 257 (415)
T PRK09664 220 GKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESF 257 (415)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 65567889999999999999999866666665566653
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.76 E-value=6.6e-06 Score=94.19 Aligned_cols=278 Identities=12% Similarity=0.105 Sum_probs=176.9
Q ss_pred hhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 157 TWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAV 236 (980)
Q Consensus 157 g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~ 236 (980)
+-..|.+|....++..+++..+++.+.+.++|....+.|.+.+.-..+++.+|+..|...+..|++..-..+..|..+..
T Consensus 41 PI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~it 120 (443)
T PRK13629 41 PIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTIT 120 (443)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667889999999999999999999999999999733666778889999999999999999999998888888888777
Q ss_pred HHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhhe
Q 002018 237 ETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVG 316 (980)
Q Consensus 237 ~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig 316 (980)
+.+.+.+... +..+ ..+..+.+.++.+++..+...|.|..-|+..++...++++++.+.+.
T Consensus 121 n~l~sfl~~q------------------l~~~-~~~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 121 NTFMTFWENQ------------------LGFA-PLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHhh------------------cCcC-CccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7776543211 0000 11234777888888999999999999999999988888887755554
Q ss_pred eeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCC-CchhHHHHHHHHHHHhhHHHHHHhhhccc----c---
Q 002018 317 ILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNG-AVDWSFNALVGLFFPAVTGIMAGSNRSAS----L--- 388 (980)
Q Consensus 317 ~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g-~~~~~f~~~f~~~~~a~tG~ea~a~~a~E----~--- 388 (980)
++-.. +. +|+.. .. ....+...+ ......+.++.+.++||.=.-.+..++-. .
T Consensus 182 LiP~w-----------~~----~~L~~-~~---~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~ 242 (443)
T PRK13629 182 LIPYW-----------NS----AVIDQ-VD---LGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKD 242 (443)
T ss_pred HHHHc-----------CH----HHHhc-Cc---cccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccc
Confidence 42111 00 12110 00 000000000 01123455556666655433333333222 2
Q ss_pred ---cccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhh-----hhh----hhHhhcc---C-----c-hHHHHHHH
Q 002018 389 ---KDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELL-----TDR----LLTATIA---W-----P-FPAVIHIG 447 (980)
Q Consensus 389 ---knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~-----~~~----~~~~~~~---~-----~-~~~ii~~~ 447 (980)
++..|.+-|+++.+..+..++|++-.+.+....+++++. +.+ +.....+ . + ...+..+.
T Consensus 243 ~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~if 322 (443)
T PRK13629 243 FGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASII 322 (443)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHH
Confidence 334577889999999999999998776666666676642 112 1111111 1 1 23333444
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHhc
Q 002018 448 IILSTLGAALQSLTGAPRLLAAIAN 472 (980)
Q Consensus 448 il~s~lss~~s~l~~asR~L~alAr 472 (980)
..++..+|-++-..+.---+..+.+
T Consensus 323 a~~AI~TSFlGv~LGl~E~l~gl~~ 347 (443)
T PRK13629 323 ALVAIFKSFFGHYLGTLEGLNGLIL 347 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666664
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.63 E-value=3.1e-05 Score=87.15 Aligned_cols=267 Identities=14% Similarity=0.108 Sum_probs=183.7
Q ss_pred hhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHH
Q 002018 146 NILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNA 225 (980)
Q Consensus 146 ~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~ 225 (980)
.++|++.....+..+..+| .+++..++++++....++.+..++.. +|. -..+.+..+.+|+.+|...+..|.+.+.
T Consensus 14 ~~~g~~~l~~p~~l~~~~~--d~Wi~~ll~~~~~l~~~~l~~~l~~~-~p~-~~l~~~~~~~~Gk~lg~ii~~~~~l~~l 89 (320)
T PF03845_consen 14 SIIGTGILFLPAILAEQAG--DAWISVLLGGLIGLLLALLIYYLLKR-FPG-KTLVEISEKLFGKWLGKIINLLYILYFL 89 (320)
T ss_pred HHHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHHHHHHHHH-CCC-CCHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 4668877777777777774 66788999999999999999999997 775 6678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-ccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHH
Q 002018 226 VAGAMYVLGAVETFLKA-VPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLI 304 (980)
Q Consensus 226 ~~~a~~~~~~~~~l~~~-~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~ 304 (980)
...+.....+++.+... +|.. +..++...+++++......|.+..+|...++..
T Consensus 90 ~~~~~~lr~~~~~i~~~~lp~T-------------------------P~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~ 144 (320)
T PF03845_consen 90 LISALVLREFSEFIKTYLLPET-------------------------PIWVIILLFLLVAAYAARKGIEVIARVAEILFP 144 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCcC-------------------------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999898998888775 3321 223566667777788889999999996666555
Q ss_pred HHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhh
Q 002018 305 PVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNR 384 (980)
Q Consensus 305 ~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~ 384 (980)
+.++.++++.+... .. .+ .+|+.|-+.. ....++.+.....+.|.|++.....
T Consensus 145 ~~~i~~~~i~~~~~--~~---------~~----~~~l~P~~~~------------g~~~i~~~~~~~~~~~~~~~~~l~~ 197 (320)
T PF03845_consen 145 IFLILLLLILLLSI--PN---------ID----WDNLLPVLES------------GIKPILKGSLVISFPFGGIEILLFL 197 (320)
T ss_pred HHHHHHHHHHHHhc--cc---------CC----HHHeeCcccC------------ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444443333221 11 01 2344443321 1234666677777889999999999
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh--hhhHh----hcc---CchHHHHHHHHHHHHHHH
Q 002018 385 SASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD--RLLTA----TIA---WPFPAVIHIGIILSTLGA 455 (980)
Q Consensus 385 a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~--~~~~~----~~~---~~~~~ii~~~il~s~lss 455 (980)
..-+|+|+| ..|....+...+.++|.+..+..-.+...+..... |.... ..+ .-...++...-+.+.+..
T Consensus 198 ~p~~~~~~~-~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~ 276 (320)
T PF03845_consen 198 FPFVKDKKK-LKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIK 276 (320)
T ss_pred HHHcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999865 57899999999999998755444433333322111 21111 111 112345555556666777
Q ss_pred HHHHhhhhHHHHHH
Q 002018 456 ALQSLTGAPRLLAA 469 (980)
Q Consensus 456 ~~s~l~~asR~L~a 469 (980)
....++++.+.+..
T Consensus 277 ~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 277 ISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888888887655
No 52
>PTZ00206 amino acid transporter; Provisional
Probab=98.30 E-value=0.00021 Score=84.59 Aligned_cols=235 Identities=10% Similarity=0.075 Sum_probs=127.7
Q ss_pred hhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHH
Q 002018 147 ILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAV 226 (980)
Q Consensus 147 i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~ 226 (980)
++|+|+. .++++..++|....++..+++++++..+..-+.+.+.. +..-.....+...+|+..+..+.+..++....
T Consensus 73 ~iGaGIL-sLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~--~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G 149 (467)
T PTZ00206 73 TVGAGIV-GLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK--TNIRTYEGVARVLLGPWGSYYVAATRAFHGFS 149 (467)
T ss_pred HHhHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 7788754 46778888998877777777777777766666665553 33334445556678999999999888888888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHH-HHHHHHhhhhHHHHHhhHHHHH
Q 002018 227 AGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTII-LCFIVFGGVKIINRVAPTFLIP 305 (980)
Q Consensus 227 ~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~-~~~in~~Gvk~~~~~~~~~~~~ 305 (980)
.+..|.+..++.+...++..+.. ..+....... .++.++.+++ +-+.-...++..+.+..+...+
T Consensus 150 ~cv~YlIiigd~l~~~l~~~~~~-------------~~~~~~~~~r-~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~ 215 (467)
T PTZ00206 150 ACVAYVISVGDILSATLKGTNAP-------------DFLKQKSGNR-LLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSF 215 (467)
T ss_pred HHHHHHHHHHHHHHHHhccCCcc-------------chhhhccCcE-EeeeehhhhHhhhcccccchHHHHHHHHHHHHH
Confidence 88888888888877666532110 0000000000 0111111111 1111122333333332221111
Q ss_pred HHHHHHHhhheeeecCCCCCCCCccccccccc-ccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhh
Q 002018 306 VLLSIFCIFVGILLASKDDPAPGITGLKLKTF-KDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNR 384 (980)
Q Consensus 306 ~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~-~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~ 384 (980)
.+..++.+++-.+. .+.+. +......... ..++ +.|. ....+..+++++.|||.+.-.....
T Consensus 216 i~~~vi~ivi~~~~--~~~~~-~~~~~~~~~~~~~~~-~~f~-------------~~~~~~~algi~~faF~~h~~~~~i 278 (467)
T PTZ00206 216 MVYLVIVIVVHSCM--NGLPE-NIKNVSVGKDDNAEI-ILFN-------------SGNRAIEGLGVFIFAYVFQITAYEV 278 (467)
T ss_pred HHHHHhhhhhhhhc--ccCcc-cccccccCCCCCCce-EEec-------------CchHHHhhhhHHHhhhhhhhhhHHH
Confidence 11111111110000 11000 0000000000 0000 0010 0124678899999999999999999
Q ss_pred cccccccc-cchhHHHHHHHHHHHHHHHHHHH
Q 002018 385 SASLKDTQ-RSIPIGTLAATLTTTALYVISVL 415 (980)
Q Consensus 385 a~E~knP~-ksIP~a~~~si~~~~v~Yil~~~ 415 (980)
-.|+|||. ++..+.+..++.+++++|.+..+
T Consensus 279 ~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~ 310 (467)
T PTZ00206 279 YMDMTNRSVGKFVLASTIAMGMCFTMYVLTAF 310 (467)
T ss_pred HHhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999975 67888888999999999986443
No 53
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.20 E-value=0.00016 Score=82.55 Aligned_cols=296 Identities=18% Similarity=0.177 Sum_probs=153.1
Q ss_pred cCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcc------
Q 002018 122 TYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM------ 195 (980)
Q Consensus 122 ~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p------ 195 (980)
++.+.+.....++..+|++ ||.|+ .-++..+||+..+++|+.+.+ ...+.++=+-|+..+..
T Consensus 18 ~iS~fqA~~~ala~~vG~G-----NI~GV------a~AI~~GGPGAiFWMWi~a~~-Gmatk~~E~~La~~yR~~~~~G~ 85 (416)
T PF01235_consen 18 GISPFQALCTALAGTVGTG-----NIAGV------ATAIAIGGPGAIFWMWISALL-GMATKYAEVTLAQKYREKDEDGE 85 (416)
T ss_pred CcChHHHHHHHHHhccCcc-----hHHHH------HHHHHhhchhHHHHHHHHHHH-HHHHHHHHHHHHHHheEECCCCC
Confidence 4555666667777777764 45566 345667799999999987654 33444333334443221
Q ss_pred ccCchhhhHHHHhCchhhHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCC
Q 002018 196 KGGGPYYLIGRALGPEVGVSIGLCFFLG----NAVA-GAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSL 270 (980)
Q Consensus 196 ~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~----~~~~-~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~ 270 (980)
-.||..+|+++.+|..+. ++.|.+. ..+. .....-..++.+...++
T Consensus 86 ~~GGP~yyi~~gl~~k~l---a~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~-------------------------- 136 (416)
T PF01235_consen 86 YRGGPMYYIEKGLGSKWL---AILFAIFLIIAFGIGFNMVQANSIADALSSAFG-------------------------- 136 (416)
T ss_pred EeecHHHHHHHHhccchH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcc--------------------------
Confidence 348999999999987652 2222222 1111 01111111222222111
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCC
Q 002018 271 HDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNN 350 (980)
Q Consensus 271 ~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~ 350 (980)
.+..+.++++.+++.++-+-|+|..+++...+.=+..+.-+...+.++....++ ..+ .+..-+...|.+...
T Consensus 137 i~~~~~gi~l~~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~----ip~----~~~~If~~AF~~~aa 208 (416)
T PF01235_consen 137 IPPWITGIILAILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQ----IPA----AFSLIFSSAFTPKAA 208 (416)
T ss_pred ccHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----HHH----HHHHHHHHHcCCccc
Confidence 122356677777777888889998888765543222222211111111111110 000 011112222332211
Q ss_pred CCCCCCCCCchhHH----HHHHHHHHH---hhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccch
Q 002018 351 AGIPDPNGAVDWSF----NALVGLFFP---AVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATR 423 (980)
Q Consensus 351 ~g~~~~~g~~~~~f----~~~f~~~~~---a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~ 423 (980)
.| +.-| ..+ ...+.=..| +=.|....++.+.|+++|.|.==.+++..++-+.++-.++.+++.....+
T Consensus 209 ~G--G~~G---~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~ 283 (416)
T PF01235_consen 209 FG--GFAG---STIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVW 283 (416)
T ss_pred hh--hHHH---HHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCC
Confidence 00 0001 011 011111122 33577888888999999998776666666665555544443333333211
Q ss_pred ---hhhhhhhhhH----hhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 002018 424 ---EELLTDRLLT----ATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIA 471 (980)
Q Consensus 424 ---~~~~~~~~~~----~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alA 471 (980)
.......+.. ...+...++++.+++++-.+++.++..+.+-+.+.-+-
T Consensus 284 ~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 284 SWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred CCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 1111112222 22344457889999999999999999999999887765
No 54
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.19 E-value=0.0014 Score=75.92 Aligned_cols=237 Identities=16% Similarity=0.168 Sum_probs=138.0
Q ss_pred ccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCc-----hhhhHHHH
Q 002018 133 LGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGG-----PYYLIGRA 207 (980)
Q Consensus 133 lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG-----~y~~~sr~ 207 (980)
-+++..++- ++..+.|.+ .+.+++++.+.|-...++..++.+++++-|+.-++++-.. .+.-.| .-....++
T Consensus 38 ~s~~~a~~~-~i~~~~G~g-vLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~-~~~~~~~r~~~Y~dl~~~a 114 (437)
T KOG1303|consen 38 GSWWQAAFH-IINALIGAG-VLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEM-HEAVPGKRRYRYPDLGQAA 114 (437)
T ss_pred Ccceehhhh-eehhhhhhh-hhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCccCCChHHHHHHH
Confidence 444444432 122234443 4667789999997776778888889999998878888776 666667 44566778
Q ss_pred hCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHH
Q 002018 208 LGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFI 287 (980)
Q Consensus 208 lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~i 287 (980)
+|+..=..+++..++.....+..+.+..++.+...++....- . ..+. ......+++.+.+.+..+=
T Consensus 115 fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~--------~----~~l~--~~~f~iif~~i~~~~s~lp 180 (437)
T KOG1303|consen 115 FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLN--------D----NSLD--KQYFIIIFGLIVLPLSQLP 180 (437)
T ss_pred hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--------c----cccc--ceehhhhHHHHHHHHHHCC
Confidence 888775677777777776666777777788887776643110 0 0000 0111112333333333322
Q ss_pred HHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCC-CCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHH
Q 002018 288 VFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDD-PAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNA 366 (980)
Q Consensus 288 n~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~-~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~ 366 (980)
|+-..++..-...+++. ..+.+.+.+|+....+.+ +..+ +... .+.+ ..+.
T Consensus 181 ~~~~l~~~S~~~avmS~--~~a~~~~~~g~~~g~~~~~~~~~----------------~~~~------~~~~----~~f~ 232 (437)
T KOG1303|consen 181 NFHSLSYLSLVGAVMST--LYAVILIVLGIADGVGFCAPSGG----------------YLDL------GTIP----TVFT 232 (437)
T ss_pred CcchhHHHHHHHHHHHH--HHHHHHHHHhhccccccCCcccC----------------cccC------CCCc----chhh
Confidence 33333222222211111 111223333433221110 0000 0000 0001 1157
Q ss_pred HHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHH
Q 002018 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL 415 (980)
Q Consensus 367 ~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~ 415 (980)
+++...|+|.|--..-+.=..+|+|++ .+|+.+.+..+++++|+.+.+
T Consensus 233 a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai 280 (437)
T KOG1303|consen 233 ALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAI 280 (437)
T ss_pred hhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHH
Confidence 789999999999888888889999999 999999999999999996443
No 55
>PLN03074 auxin influx permease; Provisional
Probab=98.11 E-value=0.0023 Score=75.66 Aligned_cols=217 Identities=12% Similarity=0.042 Sum_probs=110.6
Q ss_pred cchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHH----HHHcCCccccCch--------hhhHHHHhCc
Q 002018 143 CLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLS----AIATNGAMKGGGP--------YYLIGRALGP 210 (980)
Q Consensus 143 ~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~a----Elat~~~p~~GG~--------y~~~sr~lgp 210 (980)
.+.+.+|+++ +.++++..++|....++..++.++++.-++.-++ |...+ .+..+-. +..+.+.+||
T Consensus 55 l~~~~vG~GI-LaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r-~~~~~~~~~~~~~~~~e~~~~~~G~ 132 (473)
T PLN03074 55 CASNQVAQVL-LTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRAR-KEREKVDFKNHVIQWFEVLDGLLGP 132 (473)
T ss_pred HHHHHHhHHH-HhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcCCCchhHHHHHHHHHHHHhcCh
Confidence 3444667765 4578888999987666666666666665655544 55665 5553321 2234557799
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHh
Q 002018 211 EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFG 290 (980)
Q Consensus 211 ~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~ 290 (980)
.++.......++.....+..+.+..+..+....+.. +. .....+++++.+.+..+-+
T Consensus 133 ~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~--------------------~~-~~~~~i~~~v~~~~~~i~s-- 189 (473)
T PLN03074 133 YWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL--------------------DK-RTWTYIFGACCATTVFIPS-- 189 (473)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc--------------------CC-CeEEeehHHHHHHHHHccC--
Confidence 887766555444444444444444333222111100 00 0111122222222222222
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHH
Q 002018 291 GVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGL 370 (980)
Q Consensus 291 Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~ 370 (980)
.+....+..+.....+...+.++++.+.... . +.+...+ + ..+..++.+++.
T Consensus 190 -l~~l~~~S~ig~~~tl~~av~i~i~~i~~~~-~------------------~~~~~~~------~--~~~~~~f~~~~~ 241 (473)
T PLN03074 190 -FHNYRIWSFLGLLMTTYTAWYMTIAALSHGQ-V------------------EGVKHSG------P--TKLVLYFTGATN 241 (473)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C------------------CCCCCCC------c--hhHHHHHHHHHH
Confidence 3333333322222212111122222111100 0 0000000 0 123356667777
Q ss_pred HHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHH
Q 002018 371 FFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVIS 413 (980)
Q Consensus 371 ~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~ 413 (980)
+.|+|.|.-..-..-.|+|||++ .|+....+...++++|+..
T Consensus 242 i~faf~g~~v~~~I~~~M~~P~~-F~~~~~l~~~~v~~~y~~~ 283 (473)
T PLN03074 242 ILYTFGGHAVTVEIMHAMWKPQK-FKYIYLAATLYVLTLTLPS 283 (473)
T ss_pred HHHHhcccccHHHHHHhccChhc-ccchHHHHHHHHHHHHHHH
Confidence 89999999999999999999975 7777777777777777754
No 56
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.81 E-value=0.0058 Score=70.05 Aligned_cols=160 Identities=16% Similarity=0.139 Sum_probs=101.4
Q ss_pred HHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 002018 205 GRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIIL 284 (980)
Q Consensus 205 sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~ 284 (980)
-|.+||...+.+-...++.+.-.+..|.+-.++.+...+... .+...+.+++..+.+..+
T Consensus 131 ~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------------------~~~~~s~~~~i~~~~~~~ 190 (449)
T KOG1304|consen 131 LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------------------SPGVLSVRLYILIQLPPL 190 (449)
T ss_pred HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------------------CCCCccHHHHHHHHHHHH
Confidence 788899999999999999999888888887777777665421 122355667777777777
Q ss_pred HHHHHh-hhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhH
Q 002018 285 CFIVFG-GVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWS 363 (980)
Q Consensus 285 ~~in~~-Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~ 363 (980)
..+|+. -.|...-+..+..++.+++++.+..=.+....+ . ++ .+.+. + ..+
T Consensus 191 lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~--~------------~~-~~~~~-----------~--~~~ 242 (449)
T KOG1304|consen 191 LLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPP--T------------SD-LPAVT-----------G--WSG 242 (449)
T ss_pred HHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCC--c------------cc-ccccc-----------c--hhh
Confidence 777753 344444333333333333333222111100000 0 00 01111 1 224
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcccccccccch--hHHHHHHHHHHHHHHHH
Q 002018 364 FNALVGLFFPAVTGIMAGSNRSASLKDTQRSI--PIGTLAATLTTTALYVI 412 (980)
Q Consensus 364 f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksI--P~a~~~si~~~~v~Yil 412 (980)
+-..|+++.|||-|+-.+--+=+++|+|++=. +...-.++.+++++|+.
T Consensus 243 ~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~~ 293 (449)
T KOG1304|consen 243 LPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYIF 293 (449)
T ss_pred hHHHHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHHH
Confidence 56678999999999999888999999998533 37778888899999985
No 57
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=97.81 E-value=1.5e-06 Score=101.30 Aligned_cols=347 Identities=13% Similarity=0.085 Sum_probs=178.7
Q ss_pred hhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcc---ccCchhhhHHHHhCchhhHHHHHHHHH
Q 002018 146 NILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM---KGGGPYYLIGRALGPEVGVSIGLCFFL 222 (980)
Q Consensus 146 ~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p---~~GG~y~~~sr~lgp~~Gf~~Gw~~~l 222 (980)
+++|+++ +.++++..++|....++..++.++++..+..-+.+.+.. .+ +.-..-..+.+.+||..+..+....++
T Consensus 15 ~~iG~G~-L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~-~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~ 92 (409)
T PF01490_consen 15 SIIGAGI-LSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANA-MPNGTGRRSYGDLARRAFGPKGKWFVDICIFI 92 (409)
T ss_pred HHHhHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccc-cccccccccccccccccccccccccccchhee
Confidence 3677764 456788889998888888888999999999999998885 54 333334455789999998888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHH
Q 002018 223 GNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTF 302 (980)
Q Consensus 223 ~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~ 302 (980)
.....+..|.+...+.+...++... .. .......+.+++.+++..+.+ .|....+....
T Consensus 93 ~~~g~~v~y~i~~~~~l~~~~~~~~------------------~~-~~~~~~~~~~i~~~i~~pls~--~~~l~~l~~~s 151 (409)
T PF01490_consen 93 YLFGSCVAYLIIIGDSLSSLIPSFF------------------GD-LFISRYVWIIIFALIVLPLSF--LKNLKSLRYLS 151 (409)
T ss_pred ccccccceeEEEeeeeeeccccccc------------------cc-ccccccccccccccccccccc--cchhhHHHHHh
Confidence 7776666666666666655544320 00 001111222222222222222 23333332221
Q ss_pred HHHHHHHHHH-hhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHH
Q 002018 303 LIPVLLSIFC-IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAG 381 (980)
Q Consensus 303 ~~~~il~i~~-iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~ 381 (980)
... ++.++. +.+..+......+... .+. +.... .......++...++++.|+|.+....
T Consensus 152 ~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~~~--------~~~~~~~~~~~~~~i~~faf~~~~~~ 211 (409)
T PF01490_consen 152 ILG-LFSIFYFIVIVVIYIISYGPGEP----------SGV-PSPPV--------WPFISFSGFFSAFGIIIFAFSCHPNL 211 (409)
T ss_pred hhh-hhccceeeeeecceeeeeecccc----------ccc-ccccc--------cccchhhHHHHhhhhhhhhhhccccc
Confidence 111 111111 1111111000000000 000 00000 00113457889999999999999999
Q ss_pred hhhccccccccc--chhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhccC-chHHHHHHHHHHHHHHHHHH
Q 002018 382 SNRSASLKDTQR--SIPIGTLAATLTTTALYVISVLLFGAAATREELLTDRLLTATIAW-PFPAVIHIGIILSTLGAALQ 458 (980)
Q Consensus 382 a~~a~E~knP~k--sIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ii~~~il~s~lss~~s 458 (980)
.....|+|+|++ ++-++...++..++++|++..+.-...- .++. .++........ +...+..+...++.+.+.--
T Consensus 212 ~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f-g~~~-~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl 289 (409)
T PF01490_consen 212 PPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAF-GDSV-QGNILLNLPNDDVLIIIARILLVISLLLSYPL 289 (409)
T ss_pred ceeeeeccCCccccccceeeeehhhhhhHHhhhhhhccccee-eeee-cchhhhcCCCcccccccccccchhhhhhcccc
Confidence 999999999886 5779999999999999997444322221 1111 11111111111 12334444444444444433
Q ss_pred HhhhhHHHHHHHhcCC--CCCccceeecCCCCCchh---hHHHHHHHHhhhhccccccchhhhhHHH--HHHHHHHHHHH
Q 002018 459 SLTGAPRLLAAIANDD--ILPVLNYFKVAEGREPHI---ATFFTAFICIGCVIIGNLDLITPTITMF--FLLCYSGVNLS 531 (980)
Q Consensus 459 ~l~~asR~L~alArDg--~lP~~~~~~~~~~g~P~~---Aill~~~i~~l~~l~~~~~~l~~i~s~~--~ll~y~~i~la 531 (980)
.++.+.+.+..+-... ..+. ..+..+.+...+ .+.+..+..++.....+++.+.++.+.. ..++|.+.++.
T Consensus 290 ~~~p~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~ 367 (409)
T PF01490_consen 290 QLFPARNSLENLLFKRAASSRD--SPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALL 367 (409)
T ss_pred ccchhHhhhhhheecccccccc--ccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHH
Confidence 4444444444444321 0000 000111111111 1111112222233345677777766543 36788788888
Q ss_pred HHHhhhcC
Q 002018 532 CFLLDLLD 539 (980)
Q Consensus 532 ~~~~r~~~ 539 (980)
+++.++.+
T Consensus 368 ~~~~~~~~ 375 (409)
T PF01490_consen 368 YLKLFKRK 375 (409)
T ss_pred HHHhhccc
Confidence 88777643
No 58
>PRK11017 codB cytosine permease; Provisional
Probab=97.80 E-value=0.037 Score=64.38 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=63.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHH-HhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 163 GGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR-ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK 241 (980)
Q Consensus 163 aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr-~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~ 241 (980)
-+...++++.+++.++......-.+-.+. +.|=.+...+| .+|..-+...+...++..+.-.+......+..+..
T Consensus 39 Ls~~~ai~aiilG~~i~~~~~~l~~~~G~----k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~ 114 (404)
T PRK11017 39 LSFVDFLLAVLIGNLLLGIYTAALGYIGA----KTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVK 114 (404)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 36677777777777665555544554444 34544544444 77866555555544444333333333333333332
Q ss_pred hccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHH
Q 002018 242 AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSI 310 (980)
Q Consensus 242 ~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i 310 (980)
.++. +.....+++.++.+...++|.|...+++.+...+.++.+
T Consensus 115 ~~~~--------------------------~~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~ 157 (404)
T PRK11017 115 ATGL--------------------------DINLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLG 157 (404)
T ss_pred HhCC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2210 001233345555666778888888888887655544433
No 59
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.76 E-value=0.0049 Score=69.94 Aligned_cols=306 Identities=14% Similarity=0.146 Sum_probs=155.5
Q ss_pred ccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCcc-----
Q 002018 121 ITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAM----- 195 (980)
Q Consensus 121 ~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p----- 195 (980)
++..+.+..+..++.-.|+. ||-|+ .-++..+||+..+++|+.+.+ -..|.++=+-++..+..
T Consensus 61 ~~vS~FqAl~~sla~~VGtG-----NIaGV------AtAI~~GGPGAvFWMWi~Al~-Gmat~f~E~~La~~Yr~kd~~G 128 (452)
T COG1115 61 GGVSSFQALMTSLAARVGTG-----NIAGV------ATAIALGGPGAVFWMWIVALF-GMATKFAESTLAQKYRVKDKDG 128 (452)
T ss_pred CCcChHHHHHHHHHhccCcc-----hHHHH------HHHHHcCCCccHHHHHHHHHH-HHHHHHHHHHHHhheeEeCCCC
Confidence 44556666777777777764 55566 335566799999999987644 44555555556665222
Q ss_pred -ccCchhhhHHHHhCch-hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCch
Q 002018 196 -KGGGPYYLIGRALGPE-VGVSIGLCFFLGNA-VAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHD 272 (980)
Q Consensus 196 -~~GG~y~~~sr~lgp~-~Gf~~Gw~~~l~~~-~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 272 (980)
-.||.-||+.+.+|-. +|...+....++.. +......-+.++.+...++ .+
T Consensus 129 ~~~GGP~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~--------------------------~~ 182 (452)
T COG1115 129 EYRGGPAYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG--------------------------IP 182 (452)
T ss_pred CCcCChHHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC--------------------------Cc
Confidence 2378889999998843 33333322222221 1122222233444433332 12
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCC
Q 002018 273 LQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAG 352 (980)
Q Consensus 273 ~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g 352 (980)
..+.++++.++...+-+-|+|-.+++.....=+..+.-+...+.++...-+. ..+ .+..-+.+.|.+...
T Consensus 183 ~~~~gi~la~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~----iP~----~i~~If~sAF~~~aa-- 252 (452)
T COG1115 183 PLVTGIVLALLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQ----IPA----VIALIFSSAFGPKAA-- 252 (452)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh----hHH----HHHHHHHhcCCchhh--
Confidence 3467777777788888899998888765432111111110000001000000 000 000111122222110
Q ss_pred CCCCCCCc-hhHHHHHHHHHHH---hhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhh--
Q 002018 353 IPDPNGAV-DWSFNALVGLFFP---AVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREEL-- 426 (980)
Q Consensus 353 ~~~~~g~~-~~~f~~~f~~~~~---a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~-- 426 (980)
.++..|.. ...+...+.=..| +=.|....++.+.++++|.|.==..++..+.=+.++--.+.+++.....++..
T Consensus 253 ~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~ 332 (452)
T COG1115 253 AGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGG 332 (452)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCC
Confidence 01111100 0011111222222 22456666778888999988755555544443444444444443333322211
Q ss_pred -hhhhhh----HhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 002018 427 -LTDRLL----TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (980)
Q Consensus 427 -~~~~~~----~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg 474 (980)
....+. ....+....+++.+++++-.+++.++..|.+=|.+.-+..++
T Consensus 333 ~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge~~~~fl~~~k 385 (452)
T COG1115 333 LSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGEKNIEFLFGSK 385 (452)
T ss_pred CchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 122222 223454567999999999999999999999999887766333
No 60
>PRK11375 allantoin permease; Provisional
Probab=97.75 E-value=0.089 Score=62.63 Aligned_cols=131 Identities=13% Similarity=0.031 Sum_probs=60.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHH-HHHHHHHHHHHHHHHHH----
Q 002018 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFF-LGNAVAGAMYVLGAVET---- 238 (980)
Q Consensus 164 G~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~-l~~~~~~a~~~~~~~~~---- 238 (980)
+...++++.+++.++..+.+...+-++.. .+=++....+..||..-....+.... +..+.-.+.....+++.
T Consensus 58 s~~~ai~ai~lG~~i~~~~~~l~g~~G~~---~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~ 134 (484)
T PRK11375 58 STFSIMLAIILSAFFIAAVMVLNGAAGSK---YGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLIL 134 (484)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccc---cCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777766655555444444443 22344555556788664344444431 22222222222222222
Q ss_pred HHHhccCCCcchhhhhccCCCCCCCCCCCCCCc-hhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHH
Q 002018 239 FLKAVPAAGMFRETITKVNGTATPEPIQSPSLH-DLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLS 309 (980)
Q Consensus 239 l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~-~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~ 309 (980)
+...+|...-+ +..+...... ...+..+++.++.+.+.++|.|...+++.+...+.++.
T Consensus 135 l~~i~~~~~~~------------~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~ 194 (484)
T PRK11375 135 IGKIWPGFLTL------------GGDFTLLGLSLPGLITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIV 194 (484)
T ss_pred HHHhccccccc------------ccccccCCCcHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 22334422100 0000000011 11222334455566667788898888887765554433
No 61
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.65 E-value=0.015 Score=67.18 Aligned_cols=300 Identities=15% Similarity=0.167 Sum_probs=148.7
Q ss_pred CCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc--c----c
Q 002018 123 YGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGA--M----K 196 (980)
Q Consensus 123 l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~--p----~ 196 (980)
+++.+.....+++.+|+. ||.|+ ..++..+||+..+++|+.+.+ ...+.++-+-++..+. + -
T Consensus 47 iS~fqA~~~ala~~VG~G-----nI~Gv------a~Ai~~GGpGAvFWMWI~all-Gm~~~~~e~~L~~~yr~~~~~g~~ 114 (425)
T TIGR00835 47 VSSFQALFTSLAARVGIG-----NIVGV------ATAIAIGGPGAVFWMWVTAFI-GMATKFVESTLAQKYRERDADGVF 114 (425)
T ss_pred ccHHHHHHHHHHHHHhhh-----HHHHH------HHHHHhcCCCchHHHHHHHHH-HHHHHHHHHHHHHHeeeeCCCCCE
Confidence 334444444555555442 23343 445677899999988876544 3344444444444422 1 1
Q ss_pred cCchhhhHHHHhC-chhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhH
Q 002018 197 GGGPYYLIGRALG-PEVGVSIGLCFFLGN-AVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQ 274 (980)
Q Consensus 197 ~GG~y~~~sr~lg-p~~Gf~~Gw~~~l~~-~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~ 274 (980)
.||.-+|+++.++ +.+|...+.. ++.+ .+......-..++.+...++ .+..
T Consensus 115 ~GGP~yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~--------------------------~~~~ 167 (425)
T TIGR00835 115 RGGPMYYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN--------------------------VPKL 167 (425)
T ss_pred ecChHHHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC--------------------------CcHH
Confidence 2455588888876 5556555544 3333 22233333344444442221 1123
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCCCCCC
Q 002018 275 IYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIP 354 (980)
Q Consensus 275 i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~ 354 (980)
+.++++.++...+.+-|+|..+++...+.-+..+..+...+.+....-.+ ... .+..=+...|.+..-. +
T Consensus 168 v~~i~l~~l~~~vi~GGik~Ia~v~~~lvP~m~~~Y~~~~l~ii~~n~~~----lp~----~~~~If~~AF~~~a~~--G 237 (425)
T TIGR00835 168 VTGIVLTVLTALIIFGGLKRIAKISSVVVPFMALLYVIMALYIIIMNIEQ----LPA----VISLIFRSAFGGDAAA--G 237 (425)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHH----HHHHHHHHhCCchhhH--h
Confidence 55555666666666669999998876654443333221212111111000 000 0000111222221100 0
Q ss_pred CCCCCch-hHHHHHHHHHHH---hhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchh---hhh
Q 002018 355 DPNGAVD-WSFNALVGLFFP---AVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATRE---ELL 427 (980)
Q Consensus 355 ~~~g~~~-~~f~~~f~~~~~---a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~---~~~ 427 (980)
+.-|... ..+...+.=..| |=.|....++.+.++++|.|.==.+++..++=+.++-..+.+++.....++ .+.
T Consensus 238 G~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~ 317 (425)
T TIGR00835 238 GFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLS 317 (425)
T ss_pred HHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCc
Confidence 0101000 001111111222 335777888889999999987666666666544444443333222222222 111
Q ss_pred hhhhh----HhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 002018 428 TDRLL----TATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIA 471 (980)
Q Consensus 428 ~~~~~----~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alA 471 (980)
...+. ....+...++++.+++++-.+++.++..+.+-+.+.-+-
T Consensus 318 g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~ 365 (425)
T TIGR00835 318 GAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLK 365 (425)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11222 222343357899999999999999999999988887764
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.1 Score=60.35 Aligned_cols=117 Identities=13% Similarity=0.083 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHH-HhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002018 165 IGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR-ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (980)
Q Consensus 165 ~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr-~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~ 243 (980)
...++++.+++.++..+.+..+++++.. .|=.-...+| .+|..-+.......++.++--.+.....+++.....
T Consensus 51 ~~~si~aillG~llG~i~~A~~s~~Ga~----~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~- 125 (442)
T COG1457 51 FGQSLLAILLGNLLGGIFMAYFSYQGAR----TGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG- 125 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc----cCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC-
Confidence 3455555555555555555555555543 4444444444 566665555555555555444444444443331110
Q ss_pred cCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH
Q 002018 244 PAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF 311 (980)
Q Consensus 244 p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~ 311 (980)
...+..++.+++-+++++..++|.|...+++.+.....++..+
T Consensus 126 -------------------------~~~~~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~ 168 (442)
T COG1457 126 -------------------------TGLPVWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFL 168 (442)
T ss_pred -------------------------CCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 1122235556666778888999999999999887766555444
No 63
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=97.41 E-value=0.064 Score=61.39 Aligned_cols=247 Identities=14% Similarity=0.154 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 002018 170 LVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMF 249 (980)
Q Consensus 170 i~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~ 249 (980)
+..+++.++.++.-...+.++.. .+-+...-+++.+|+.++...+....++.......+..+.+..+...++ .
T Consensus 17 w~lll~~~~~~~~q~~~~R~~~~---Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g-~--- 89 (358)
T PF01566_consen 17 WVLLLSNLLKYVFQEMAARLGIV---TGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG-I--- 89 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh---cCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C---
Confidence 34444444444444334444432 4456666667888998888888888888887777777777655544331 1
Q ss_pred hhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCc
Q 002018 250 RETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGI 329 (980)
Q Consensus 250 ~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~ 329 (980)
+..+++.++.++..++-++..+.|.++|.++.++..+..+.+++..+...++
T Consensus 90 ----------------------~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~------ 141 (358)
T PF01566_consen 90 ----------------------PLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPD------ 141 (358)
T ss_pred ----------------------CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchh------
Confidence 1123333333333333333356688899888777666655444443333211
Q ss_pred ccccccccccccC-cccccCCCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhc---cc------------cccccc
Q 002018 330 TGLKLKTFKDNWF-SDYQKTNNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRS---AS------------LKDTQR 393 (980)
Q Consensus 330 ~g~~~~~~~~n~~-~~f~~~~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a---~E------------~knP~k 393 (980)
+....+.+. |.... .+ .+..+.+..-......+...+.+ ++ .|.-++
T Consensus 142 ----~~~~~~g~~~P~~p~---------~~----~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~ 204 (358)
T PF01566_consen 142 ----WGEVARGLVVPSIPG---------PG----SLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARF 204 (358)
T ss_pred ----HHHHhhhccCCCCcc---------hh----HHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHH
Confidence 011111221 22111 01 23333333333333333332222 11 122222
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhccchhh-h-hhh---hhhHhhcc-CchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 002018 394 SIPIGTLAATLTTTALYVISVLLFGAAATREE-L-LTD---RLLTATIA-WPFPAVIHIGIILSTLGAALQSLTGAPRLL 467 (980)
Q Consensus 394 sIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~-~-~~~---~~~~~~~~-~~~~~ii~~~il~s~lss~~s~l~~asR~L 467 (980)
+.-.|+..+.++...+++.....+. +.+. . ..+ .......| .....++.++++.+.+++......+.++++
T Consensus 205 D~~~g~~~~~li~~ai~i~~A~~l~---~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~ 281 (358)
T PF01566_consen 205 DTIIGMIVSFLINVAILIVAAAVLY---PGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVL 281 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc---ccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceeh
Confidence 2222332222322222222222221 1111 1 111 22334556 356789999999999999999999999887
Q ss_pred HHHh
Q 002018 468 AAIA 471 (980)
Q Consensus 468 ~alA 471 (980)
...-
T Consensus 282 ~~~~ 285 (358)
T PF01566_consen 282 ADFL 285 (358)
T ss_pred Hhhh
Confidence 7654
No 64
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.34 E-value=0.057 Score=62.38 Aligned_cols=270 Identities=16% Similarity=0.187 Sum_probs=134.6
Q ss_pred cCchhhhHHHHhCchhhHHHHHHHHHHH--HHHHHHHHHHHHHH-HHHhccCCCcchhhhhccCCCCCCCCCCCCCCchh
Q 002018 197 GGGPYYLIGRALGPEVGVSIGLCFFLGN--AVAGAMYVLGAVET-FLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDL 273 (980)
Q Consensus 197 ~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~--~~~~a~~~~~~~~~-l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 273 (980)
.||.+.=..+..||.+|.......+++- ..++|=.....-|. +...+|. ......
T Consensus 61 ~~~~~~~l~~~v~~~f~~if~~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~----------------------~~~~~~ 118 (427)
T PF05525_consen 61 SGGGIEDLASRVGPKFALIFTILIYLSIGPLFAIPRTAAVSFEMGIAPFFPE----------------------NSNISL 118 (427)
T ss_pred cCCCHHHHhcccCcHHHHHHHHHHHHHHHhcccCcchhhhhHHHhhhccCCc----------------------ccccch
Confidence 4556666667789999887765544332 22222111111121 1111221 112334
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhh-heeeecCCCCCCCCcccccccccccccCcccccCCCCC
Q 002018 274 QIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIF-VGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAG 352 (980)
Q Consensus 274 ~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~ii-ig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g 352 (980)
.++.+++..+...+.+..-|..-++-.+++=+.++.++.++ .|++. +.+.+......+....+.+.+...|+
T Consensus 119 ~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~-p~g~~~~~~~~y~~~~f~~Gf~eGY~------ 191 (427)
T PF05525_consen 119 LIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFS-PIGPPQAPSGAYASNPFFKGFLEGYQ------ 191 (427)
T ss_pred hhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCccccchhhhhhHHHHHHHHHHh------
Confidence 47778888888888888888888888787777666666444 45443 32221111001111111111111111
Q ss_pred CCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccc---cchhHHHHHHHHHHHHHHHHHHHHHhhccchh---hh
Q 002018 353 IPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQ---RSIPIGTLAATLTTTALYVISVLLFGAAATRE---EL 426 (980)
Q Consensus 353 ~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~---ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~---~~ 426 (980)
-+.++ +...|..+-..+......+|++ |..-++-..+.....++|..... +|...... +.
T Consensus 192 -----------TMD~l--aal~Fg~iIi~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~-lGa~~~~~~~~~~ 257 (427)
T PF05525_consen 192 -----------TMDAL--AALAFGIIIINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAY-LGATSSGSFPDDI 257 (427)
T ss_pred -----------hhhHH--HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCcccccCCC
Confidence 11222 2233444444444444444433 34444444444555555554332 23332221 11
Q ss_pred hhh----hhhHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhH-HHHHHHH
Q 002018 427 LTD----RLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIAT-FFTAFIC 501 (980)
Q Consensus 427 ~~~----~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Ai-ll~~~i~ 501 (980)
... ......+|.....++.+.++++|++.+.+-+.+++..+..+- || .+++.. ++.++++
T Consensus 258 ~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~-----~k----------isY~~~v~i~~i~S 322 (427)
T PF05525_consen 258 NGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELF-----PK----------ISYKVWVIIFTIFS 322 (427)
T ss_pred CHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cc----------cChHHHHHHHHHHH
Confidence 111 223445666667888899999999999999999998776643 22 222222 2233444
Q ss_pred hhhhccccccchhhhhHHHHHHHH
Q 002018 502 IGCVIIGNLDLITPTITMFFLLCY 525 (980)
Q Consensus 502 ~l~~l~~~~~~l~~i~s~~~ll~y 525 (980)
.++.. .-++.+..++.=...+.|
T Consensus 323 ~~ian-~Gl~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 323 FIIAN-LGLDQIIKISVPILMFIY 345 (427)
T ss_pred HHHHH-hCHHHHHHHHHHHHHHHh
Confidence 33322 336666666665555555
No 65
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.14 E-value=0.9 Score=53.36 Aligned_cols=59 Identities=12% Similarity=-0.041 Sum_probs=38.4
Q ss_pred HHHHHHHcCC-ccccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002018 184 ISLSAIATNG-AMKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (980)
Q Consensus 184 ls~aElat~~-~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~ 242 (980)
..+-|++.+. ...+-|.-..+++.+|+.+++.......++.+.....+..|.+-.+...
T Consensus 79 ~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 79 MLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred HHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555532 2233377888888999888887766677777777777777776555443
No 66
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.01 E-value=0.71 Score=52.35 Aligned_cols=177 Identities=12% Similarity=0.195 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccCCC
Q 002018 271 HDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNN 350 (980)
Q Consensus 271 ~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~ 350 (980)
....++.+++..+...+.+..-|..-++-.+++=++++.++.+++..+..+.+........+.... |..+|.
T Consensus 118 ~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~p----f~~Gfl---- 189 (431)
T COG1114 118 PSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQP----FSKGFL---- 189 (431)
T ss_pred hHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhCh----HHHHHh----
Confidence 344578888888888888999898888888887777776664444433333322111100111111 111111
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHH----HHHHHHHHHHHHhhccchhhh
Q 002018 351 AGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLT----TTALYVISVLLFGAAATREEL 426 (980)
Q Consensus 351 ~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~----~~v~Yil~~~~~g~~~~~~~~ 426 (980)
+ ++.+.=+.+..+|..+-.-+..+.-.++++ .+.+-+..+-++ ..++|+. ..-+|........
T Consensus 190 ------e-----GY~TMDaLAal~FgivIv~alk~~g~~~~~-~~~~~~~~aglIa~i~La~iY~~-L~ylGa~s~~~~~ 256 (431)
T COG1114 190 ------E-----GYLTMDALAALAFGIVIVNALKSKGVTTKK-QIIKYTIKAGLIAAILLALIYLS-LFYLGATSASAAG 256 (431)
T ss_pred ------c-----chHHHHHHHHHHHHHHHHHHHHHhccCcHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHhccchHhhcc
Confidence 1 133333344445555555555554455443 333333332222 2233332 1122211111000
Q ss_pred -hhh------hhhHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 002018 427 -LTD------RLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLA 468 (980)
Q Consensus 427 -~~~------~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~ 468 (980)
..+ ...+..+|.....+..+.+.++|+..+.+-+.+++-...
T Consensus 257 ~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~ 305 (431)
T COG1114 257 LAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFS 305 (431)
T ss_pred cccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 122334555456777788888999988888888876543
No 67
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.84 E-value=0.47 Score=54.99 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHH-hhheeeecCCCCCCCCccc-ccccccccccCcccccCCCC
Q 002018 274 QIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFC-IFVGILLASKDDPAPGITG-LKLKTFKDNWFSDYQKTNNA 351 (980)
Q Consensus 274 ~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~-iiig~~~~~~~~~~~~~~g-~~~~~~~~n~~~~f~~~~~~ 351 (980)
.++.+++..+...+.+..-|..-++-.+++=+.++.++. ++.|++. +.+.+.. .++ +....+.+.+..+|
T Consensus 123 ~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~-p~g~~~~-~~~~y~~~~f~~Gf~eGY------ 194 (439)
T PRK15433 123 FIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVW-PAGSIST-ATEAYQNAAFSNGFVNGY------ 194 (439)
T ss_pred HHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC-cchhhhhhhHHHHHHhhH------
Confidence 467777888888888888888888777777666666664 4445543 2222110 001 11111111111111
Q ss_pred CCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccc---cchhHHHHHHHHHHHHHHHHHHHHHhhccch--hhh
Q 002018 352 GIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQ---RSIPIGTLAATLTTTALYVISVLLFGAAATR--EEL 426 (980)
Q Consensus 352 g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~---ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~--~~~ 426 (980)
.-+.+++.. .|..+-.-+......+|++ |..-++-..+.....++|..... +|..... ++.
T Consensus 195 -----------~TMDalaal--~Fg~iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~-lGa~s~~~~~~~ 260 (439)
T PRK15433 195 -----------LTMDTLGAM--VFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFR-LGSDSASLVDQS 260 (439)
T ss_pred -----------HHHHHHHHH--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccccCC
Confidence 122333333 3334444444444455544 33334444444445555554322 2332211 111
Q ss_pred -hhh----hhhHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002018 427 -LTD----RLLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 470 (980)
Q Consensus 427 -~~~----~~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~al 470 (980)
... ......++.....+..+.+++++++++.+.++++++-+..+
T Consensus 261 ~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~ 309 (439)
T PRK15433 261 ANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQY 309 (439)
T ss_pred CcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111 12334556666788899999999999999999999876554
No 68
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=96.80 E-value=0.24 Score=58.57 Aligned_cols=254 Identities=17% Similarity=0.117 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHH
Q 002018 224 NAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFL 303 (980)
Q Consensus 224 ~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~ 303 (980)
-+++-|..+.+++|-+....|... .....+++++++.+..+.-+|....|++.--..
T Consensus 106 gviTPAISVlSAvEGl~v~~p~~~-----------------------~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim 162 (534)
T PF02705_consen 106 GVITPAISVLSAVEGLEVATPSLE-----------------------PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIM 162 (534)
T ss_pred eeecchHHHHHHhhhhhccCCCCc-----------------------ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHH
Confidence 345666677777777665544321 122357777888888888899888877643222
Q ss_pred HHHHHHHHHhhheeeecCCCCCCCCcccccccccccccCcccccC--CCCCCCCCCCCchhHHHHHHHHHHHhhHHHHHH
Q 002018 304 IPVLLSIFCIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKT--NNAGIPDPNGAVDWSFNALVGLFFPAVTGIMAG 381 (980)
Q Consensus 304 ~~~il~i~~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~--~~~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~ 381 (980)
.+=.+.+. .+|+...... |. ....+.|.|... ... + ..+| .+++..+-+.||-|+-
T Consensus 163 ~~WF~~l~--~~G~~~I~~~-p~----------Vl~A~nP~yai~f~~~~------~--~~~~-~~LG~V~L~~TGaEAL 220 (534)
T PF02705_consen 163 LLWFLTLG--VLGLYNIIQH-PE----------VLKALNPYYAIRFFIRN------G--WIGF-FVLGAVFLCVTGAEAL 220 (534)
T ss_pred HHHHHHHH--HHHHHHHhhC-HH----------HHHHhCHHHHHHHHHHc------C--Cchh-hhcchHHHHHhhHHHH
Confidence 22222222 2222211110 00 001122221100 000 0 1123 3456667789999986
Q ss_pred hhhccccc-ccccchhHHHHH-HHHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHHHHHHHHHHHHHHHH
Q 002018 382 SNRSASLK-DTQRSIPIGTLA-ATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHIGIILSTLGAALQS 459 (980)
Q Consensus 382 a~~a~E~k-nP~ksIP~a~~~-si~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~~~il~s~lss~~s~ 459 (980)
-. |+- -.+|+|-++-.. ..-...+-|+.-...+...+ + ...+|+....-.| +.+.+.+...++++-+.-+.
T Consensus 221 yA---DmGHfg~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~~p--~-~~~npFf~~~P~~-~~~p~~ilAtlAtIIASQA~ 293 (534)
T PF02705_consen 221 YA---DMGHFGRKPIRIAWFFLVFPALLLNYFGQGALLLSHP--E-AVSNPFFLLIPEW-LLWPMVILATLATIIASQAV 293 (534)
T ss_pred Hh---hhccccchhhhhhHHHHHHHHHHHHHccHHHHHHcCc--c-hhhhHHHHHhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 53 222 245677666555 33333344554222222111 1 2244554333222 22222233333334444444
Q ss_pred hhhhHHHHHHHhcCCCCCccceeecCCC-----CCchhhHHHHHHHHhhhhccccccchhhhhHHHHHHHHHHHH
Q 002018 460 LTGAPRLLAAIANDDILPVLNYFKVAEG-----REPHIATFFTAFICIGCVIIGNLDLITPTITMFFLLCYSGVN 529 (980)
Q Consensus 460 l~~asR~L~alArDg~lP~~~~~~~~~~-----g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ll~y~~i~ 529 (980)
+.++--+....-+-|.+|+.+..+.++. -.|..--++...+..+.+.+.+-+.+++..++....+..+..
T Consensus 294 Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~tM~iTT 368 (534)
T PF02705_consen 294 ISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTGTMLITT 368 (534)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHHHHHHHHHH
Confidence 5555555666668899999755544432 246544444433334444567788888888877766664443
No 69
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=96.51 E-value=2.4 Score=49.05 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=69.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchh-hhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 163 GGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPY-YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK 241 (980)
Q Consensus 163 aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y-~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~ 241 (980)
-+...++++.+++.++..+.+.-.+.++. +.|=.+ ...+..+|..-....+....+..+.-.+..+...++.+..
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~----~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~ 101 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGA----DTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASL 101 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566676666666655554444444444 345444 4455577877666666666666655556666555665555
Q ss_pred hccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH
Q 002018 242 AVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIF 311 (980)
Q Consensus 242 ~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~ 311 (980)
..+.. + | ... ..+...++.++..++.++|.|...+++.+...+.++..+
T Consensus 102 ~~~~~--~--------~----------~~~-~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~ 150 (386)
T TIGR02358 102 LGGRL--F--------G----------EES-PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATL 150 (386)
T ss_pred HHHHh--c--------C----------CCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43311 0 0 001 112223344456666788999998888887665554444
No 70
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=96.37 E-value=2 Score=49.56 Aligned_cols=244 Identities=19% Similarity=0.248 Sum_probs=117.5
Q ss_pred cceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCc-hh
Q 002018 134 GTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGP-EV 212 (980)
Q Consensus 134 G~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp-~~ 212 (980)
++-.|..+.+..+-+|-+=.-|+++.+++-|-+.-++.|++..+ ..-.-+-++|.+- |.- +++.-.=+-|.+.| ..
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l-~~GiPlli~Ef~i-Gr~-~~~~~~~a~~~l~~~~~ 85 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLL-LVGIPLLLAEFAI-GRR-GRKNAVGAFRKLAPKKK 85 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHH-HHhHHHHHHHHHh-hhh-cCCChhHHHHHhccCcc
Confidence 33344444444455677778888888888775555555555443 3334456778876 332 22222223344443 55
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh----ccC-CCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHH
Q 002018 213 GVSIGLCFFLGNAVAGAMYVLGA---VETFLKA----VPA-AGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIIL 284 (980)
Q Consensus 213 Gf~~Gw~~~l~~~~~~a~~~~~~---~~~l~~~----~p~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~ 284 (980)
.-.+||.-.++..+..+.|.+-. ..|+... ++. .+.+....... . .+.+....+-++++++.
T Consensus 86 ~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~--------~--~~~~~~~~~~~~~~~lt 155 (439)
T COG0733 86 WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQT--------I--SNPGLAVIFHLLFLVLT 155 (439)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHH--------h--cCchHHHHHHHHHHHHH
Confidence 56677776666666666665533 1222221 210 00000000000 0 00122223335566666
Q ss_pred HHHHHhhhhH-HHHHhhHHHHHHHHHHHHhhh-eeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchh
Q 002018 285 CFIVFGGVKI-INRVAPTFLIPVLLSIFCIFV-GILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDW 362 (980)
Q Consensus 285 ~~in~~Gvk~-~~~~~~~~~~~~il~i~~iii-g~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~ 362 (980)
.++...|++. .-|...++.=...+.++.+++ .+. .++ ...|+ .-.+.|+|..-.+ ..
T Consensus 156 ~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~t-LpG-----A~~G~-----~f~l~PD~s~l~~----------~~ 214 (439)
T COG0733 156 ALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVT-LPG-----AMEGL-----KFLFKPDFSKLTD----------PK 214 (439)
T ss_pred HHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHc-Ccc-----HHHHH-----HHHhcCCHHHcCc----------hh
Confidence 6777788876 334444433222222221111 111 111 11222 1234555544321 22
Q ss_pred HHHHHHHHHHHhh-HHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHH
Q 002018 363 SFNALVGLFFPAV-TGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI 412 (980)
Q Consensus 363 ~f~~~f~~~~~a~-tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil 412 (980)
.+..+++.+||+. .|+-.-...|.=+ +.+.++|+......+.-+.+-++
T Consensus 215 v~~~AlGQ~FFsLSlG~g~mitYsSYL-~k~~~l~~sa~~v~~~n~~~s~l 264 (439)
T COG0733 215 VWLAALGQAFFSLSLGFGIMITYSSYL-SKKSDLVSSALSIVLLNTLISLL 264 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-CcccchhhhHHHHHHHHHHHHHH
Confidence 5788999999976 3544444444433 34678888777766666555553
No 71
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=96.34 E-value=1.6 Score=48.01 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHHHHHHHH
Q 002018 168 SLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSIGLCFFL 222 (980)
Q Consensus 168 ~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l 222 (980)
+.++.++++++..+.+.-..+++.+ -++...-.+.++.+||.++-..-....+
T Consensus 38 s~~gIivs~vlf~~~g~vim~ig~~--f~a~~y~~~~~~v~~~~~~ki~d~~iif 90 (349)
T COG3949 38 SILGIILSTVLFTLSGAVIMTIGKK--FNATSYREILKYVSGPKFAKIIDIIIIF 90 (349)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--hcccchHHHHHHHhhHHHHHHHHHHHHH
Confidence 5567888888888888888999985 4677777899999999998766544433
No 72
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=96.14 E-value=2 Score=51.48 Aligned_cols=112 Identities=9% Similarity=-0.030 Sum_probs=68.2
Q ss_pred cccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHH---HHHHHHHHHHHHHHHHHcCCccccCchhhhHHH
Q 002018 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVA---FCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR 206 (980)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~l---i~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr 206 (980)
.|++|++ -.......+..+...|++.....-..|....++... ...+...+.+-=+.+++ . ....=..+.|..+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~-~~~~~T~~d~l~~ 113 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-K-ARGATTIPDFLEA 113 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-ccCCccHHHHHHH
Confidence 4566665 112222223345455555554444455544443333 33344444555566666 3 4556667889999
Q ss_pred HhC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 002018 207 ALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVP 244 (980)
Q Consensus 207 ~lg-p~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p 244 (980)
.+| +......+....+..+.-+++...+....+...++
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g 152 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG 152 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 999 88888888888888888888888888877655443
No 73
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=96.07 E-value=4.8 Score=48.13 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=24.2
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 002018 436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (980)
Q Consensus 436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg 474 (980)
.+.+..-++.++++.+++|++.+.+.+.+=+ +++|=
T Consensus 316 lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~---~~~Di 351 (483)
T PRK09442 316 LPPFAAGIFLAAPMAAIMSTVDSQLLQSSST---IIKDL 351 (483)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 3334456777888888888888888766543 45553
No 74
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=95.79 E-value=2.5 Score=50.72 Aligned_cols=153 Identities=16% Similarity=0.143 Sum_probs=73.2
Q ss_pred HHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHH-HHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHH
Q 002018 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATL-TTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIH 445 (980)
Q Consensus 367 ~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~-~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~ 445 (980)
+++..+-+.||-|+--. .-=.=.+|+|-++-...++ ...+-|+.-...+.. .++ ...+|+....-.|.. +.+.
T Consensus 217 ~LG~V~L~vTGaEALYA--DmGHFG~~~Ir~aW~~~v~P~L~LnY~GQgA~ll~--~p~-~~~NpFf~~~P~~~~-~p~v 290 (622)
T PRK10745 217 ALGAVVLAITGVEALYA--DMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLK--NPE-AIKNPFFLLAPDWAL-IPLL 290 (622)
T ss_pred EecceeeeccchHHHhh--ccCCCCccceeeeehhhHHHHHHHHhcchHHHHhc--Cch-hhcCcHHHhCChhHH-HHHH
Confidence 35556668899997543 2222245667666554443 445556653222211 112 234555443322222 2222
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCC---CC--CchhhHHHHHHHHhhhhccccccchhhhhHHH
Q 002018 446 IGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE---GR--EPHIATFFTAFICIGCVIIGNLDLITPTITMF 520 (980)
Q Consensus 446 ~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~---~g--~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~ 520 (980)
+...++++-+.-+.+.++=-+....-+-|++|+.+..+.++ .+ .|..--++...+..+.+.+.+-+.+++..++.
T Consensus 291 iLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiA 370 (622)
T PRK10745 291 ILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIA 370 (622)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhh
Confidence 22222333333333334434444555789999975554433 22 35433333323323333456777788877666
Q ss_pred HHHHH
Q 002018 521 FLLCY 525 (980)
Q Consensus 521 ~ll~y 525 (980)
...+.
T Consensus 371 Vt~tM 375 (622)
T PRK10745 371 VTGTM 375 (622)
T ss_pred heeHh
Confidence 54444
No 75
>PLN00149 potassium transporter; Provisional
Probab=95.71 E-value=4.5 Score=49.97 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=72.3
Q ss_pred HHHHHHhhHHHHHHhhhcccccccccchhHHHHH-HHHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHHH
Q 002018 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLA-ATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (980)
Q Consensus 368 f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~-si~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 446 (980)
++-.+-++||-|+--.=-| .=.+|+|-.|-.. ..-...+-|+.-...+.-.+....-..+++....-.+.+ |-+.+
T Consensus 274 LGgV~L~iTG~EALyADlG--HF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~iP~~~~-~P~~v 350 (779)
T PLN00149 274 LGGILLCITGSEAMFADLG--HFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVSVPEKLR-WPVLV 350 (779)
T ss_pred ecchhhcccchhhhhhccc--CCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHhCCchhH-HHHHH
Confidence 4555568899998543212 2245666666543 233333445553332222221111123355544333322 22222
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCC-----CCchhhHHHHHHHHhhhhccccccchhhhhHHHH
Q 002018 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG-----REPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (980)
Q Consensus 447 ~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~-----g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ 521 (980)
...++++-+.-+.+.++=-+....-+-|.+|+++..+.+++ -.|..--++...+.++.+.+.+.+.+++..+++.
T Consensus 351 lAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV 430 (779)
T PLN00149 351 IAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAV 430 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhh
Confidence 33333333333333333344444456799999765544432 2454433333333333344567777887766654
Q ss_pred HHHH
Q 002018 522 LLCY 525 (980)
Q Consensus 522 ll~y 525 (980)
....
T Consensus 431 ~~vM 434 (779)
T PLN00149 431 ITVM 434 (779)
T ss_pred ehHH
Confidence 4433
No 76
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=95.50 E-value=2.8 Score=51.13 Aligned_cols=153 Identities=10% Similarity=0.113 Sum_probs=73.2
Q ss_pred HHHHHHHhhHHHHHHhhhcccccccccchhHHHH-HHHHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHH
Q 002018 367 LVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTL-AATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIH 445 (980)
Q Consensus 367 ~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~-~si~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~ 445 (980)
+++..+-++||-|+--.=-| .=-+|+|-.+-. ...-...+-|+.-...+.. .++ ...+|+....-.|.. +.+.
T Consensus 243 ~LG~V~L~iTGaEALyADmG--HFg~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~--~p~-~~~NpFf~~~P~~~~-~p~~ 316 (688)
T TIGR00794 243 SLGGVVLSITGVEAMFADLG--HFGKLPIQLAWFTFVYPSLILCYIGQAAYLSK--HPE-AIKNPFFLSIPDWAL-WPLF 316 (688)
T ss_pred eccchhheeccHhhhhcccC--CCCcccceeehHHHHHHHHHHHHcchHHHHhc--Ccc-hhcCcHHHhCchHHH-HHHH
Confidence 45566668899998543222 223566666655 3333344445552222211 112 234565544333322 2222
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCC---CC--CchhhHHHHHHHHhhhhccccccchhhhhHHH
Q 002018 446 IGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAE---GR--EPHIATFFTAFICIGCVIIGNLDLITPTITMF 520 (980)
Q Consensus 446 ~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~---~g--~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~ 520 (980)
+...++++-+.-+.+.++=-+....-+-|++|+.+..+.++ ++ .|..--++...+.++.+.+.+-+.+++..+++
T Consensus 317 vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGia 396 (688)
T TIGR00794 317 IIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIA 396 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhh
Confidence 22223333333333334434444555789999975554433 22 45433333333333333456777788877666
Q ss_pred HHHHH
Q 002018 521 FLLCY 525 (980)
Q Consensus 521 ~ll~y 525 (980)
...+.
T Consensus 397 Vt~tM 401 (688)
T TIGR00794 397 VTGTF 401 (688)
T ss_pred hhhhh
Confidence 55544
No 77
>PLN00150 potassium ion transporter family protein; Provisional
Probab=95.27 E-value=0.83 Score=56.01 Aligned_cols=152 Identities=12% Similarity=0.018 Sum_probs=71.5
Q ss_pred HHHHHHhhHHHHHHhhhcccccccccchhHHHH-HHHHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHHH
Q 002018 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTL-AATLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (980)
Q Consensus 368 f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~-~si~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 446 (980)
++-.+-++||-|+--.=-| .=.+|+|-.|-. ...-...+-|+.-...+..- ++ ...+++....-.+.+ +-+.+
T Consensus 290 LG~V~L~iTGaEALyADlG--HFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~--p~-~~~npFf~~iP~~~~-~P~~v 363 (779)
T PLN00150 290 LGGIVLCMTGTEAMFADLG--HFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKH--ME-DVNDPFYRSLPKPIY-WPIFV 363 (779)
T ss_pred ecceeeeecchhhhhcccc--CCCccceeeeehhhHHHHHHHHHcchHHHHhcC--cc-cccCcHHHhCCchhH-HHHHH
Confidence 4455568899997543112 224566666655 22233333355422222111 11 233455544333322 22223
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCC-----CCchhhHHHHHHHHhhhhccccccchhhhhHHHH
Q 002018 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG-----REPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (980)
Q Consensus 447 ~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~-----g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ 521 (980)
...++++-+.-+.+.++=-+....-+-|.+|+++..+.+++ -.|..--++...+.++.+.+.+.+.+++..+++.
T Consensus 364 lAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV 443 (779)
T PLN00150 364 LATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAV 443 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhhe
Confidence 33333333333333344344444556799999755544432 2454433333333333344567777887766654
Q ss_pred HHHH
Q 002018 522 LLCY 525 (980)
Q Consensus 522 ll~y 525 (980)
....
T Consensus 444 ~~vM 447 (779)
T PLN00150 444 VGVM 447 (779)
T ss_pred ehhh
Confidence 4433
No 78
>PLN00148 potassium transporter; Provisional
Probab=95.21 E-value=4.5 Score=49.94 Aligned_cols=150 Identities=11% Similarity=0.068 Sum_probs=70.8
Q ss_pred HHHHHHhhHHHHHHhhhcccccccccchhHHHHHH-HHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHHH
Q 002018 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAA-TLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (980)
Q Consensus 368 f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~s-i~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 446 (980)
++-.+-++||-|+--.=-| .=.+|+|-+|-... .-...+-|+.-...+.- -| + ...+++....-.+.+ +-+.+
T Consensus 273 LGgV~L~iTGaEALyADlG--HFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~-~p-~-~~~npFf~~iP~~~~-~P~~v 346 (785)
T PLN00148 273 LGGILLSITGTEAMFADLG--HFTAASIRLAFATVIYPCLVVQYMGQAAFLSK-NI-P-SIPNSFYDSIPDPVF-WPVFV 346 (785)
T ss_pred ecchheeccchhhhhhhcc--CCCccceEEeeeehHHHHHHHHHcchHHHHhc-Cc-c-cccCcHHHhCCchhH-HHHHH
Confidence 4555568899998543222 22456666554432 22333345543222211 11 2 234555544333322 22222
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCC-----CCchhhHHHHHHHHhhhhccccccchhhhhHHHH
Q 002018 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG-----REPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (980)
Q Consensus 447 ~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~-----g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ 521 (980)
...++++-+.-+.+.++=-+....-+-|.+|+++..+.+++ -.|..--++...+.++.+.+.+.+.+++..+++.
T Consensus 347 lAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV 426 (785)
T PLN00148 347 IATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGLAC 426 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhhhe
Confidence 33333333333333344344444556799999755544432 2454433433333333444567777887666554
Q ss_pred HH
Q 002018 522 LL 523 (980)
Q Consensus 522 ll 523 (980)
..
T Consensus 427 ~~ 428 (785)
T PLN00148 427 MT 428 (785)
T ss_pred ee
Confidence 33
No 79
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=95.18 E-value=9.1 Score=45.16 Aligned_cols=74 Identities=8% Similarity=-0.199 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCc-hhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGG-PYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLK 241 (980)
Q Consensus 164 G~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG-~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~ 241 (980)
+...++++.+++.++....+.-.+.++.. .|= +....+..+|..-+...+...++..+.-.+..+..+++++..
T Consensus 45 s~~~ailai~lG~~i~~~~~~l~~~~G~r----~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~ 119 (442)
T TIGR00800 45 SWWQSVIAIILGNLLGGIFVALNSRAGAK----YGLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVAL 119 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhHHH----hCCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45666666666666555554444444443 343 344555578876666666666555555555655555554433
No 80
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=94.94 E-value=11 Score=44.87 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=43.1
Q ss_pred hcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhc---cchhhhhhh---hhh-HhhccCchHHHHHHHHHHHHHHHH
Q 002018 384 RSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAA---ATREELLTD---RLL-TATIAWPFPAVIHIGIILSTLGAA 456 (980)
Q Consensus 384 ~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~---~~~~~~~~~---~~~-~~~~~~~~~~ii~~~il~s~lss~ 456 (980)
..--.||+ |+..|++..+.+...++++... +.|.. ..++....+ |.. ....+.+..-++.++++.+.+|++
T Consensus 258 R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~-~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~ 335 (471)
T TIGR02119 258 RCMSYKDS-KAMHRAMIIGTIVVGIIMLGMH-LAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTV 335 (471)
T ss_pred HHHhcCCH-HHHhhhHhHHHHHHHHHHHHHH-HHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHH
Confidence 44445554 5666777666555444444321 12211 111111111 222 223333445677778888888888
Q ss_pred HHHhhhhHHHHHHHhcC
Q 002018 457 LQSLTGAPRLLAAIAND 473 (980)
Q Consensus 457 ~s~l~~asR~L~alArD 473 (980)
.+.+.+.+=+ +++|
T Consensus 336 ~s~l~~~ss~---~~~D 349 (471)
T TIGR02119 336 NSLLLQSSST---IIKD 349 (471)
T ss_pred HHHHHHHHHH---HHHH
Confidence 8887777644 4555
No 81
>PLN00151 potassium transporter; Provisional
Probab=94.81 E-value=3.8 Score=50.62 Aligned_cols=152 Identities=13% Similarity=0.023 Sum_probs=70.1
Q ss_pred HHHHHHhhHHHHHHhhhcccccccccchhHHHHHH-HHHHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHHH
Q 002018 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAA-TLTTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (980)
Q Consensus 368 f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~s-i~~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 446 (980)
++-.+-++||.||--.=-| .=.+++|-.|-... .-...+-|+.-...+.- .++ ...+++....-.+.+-+++.+
T Consensus 350 LGgVvLciTGaEALfADLG--HFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~--~p~-~~~npFy~svP~~~~wP~~vl 424 (852)
T PLN00151 350 LGGCVLCATGSEAMFADLG--YFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMK--NPD-SAEQIFFSSVPSSLFWPVFLI 424 (852)
T ss_pred ecceeeeeccchhhhcccC--CCCccceeeeehhhHHHHHHHHHcchHHHHhc--Ccc-cccCcHHHhCCchhHHHHHHH
Confidence 4445558899997543112 22456666554432 22233335542222211 111 234455544333322223333
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCC-----CCchhhHHHHHHHHhhhhccccccchhhhhHHHH
Q 002018 447 GIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEG-----REPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (980)
Q Consensus 447 ~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~-----g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ 521 (980)
+++.+.+ +.-+.+.++=-+....-+-|.+|+++..+.+++ -.|..--++...+.++.+.+.+.+.+++..+++.
T Consensus 425 AtlAaII-ASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV 503 (852)
T PLN00151 425 ANLAALI-ASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAE 503 (852)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhh
Confidence 3333333 223333333334444456799999755544432 2454433333333333344567777887766654
Q ss_pred HHHH
Q 002018 522 LLCY 525 (980)
Q Consensus 522 ll~y 525 (980)
....
T Consensus 504 ~~vM 507 (852)
T PLN00151 504 VGVM 507 (852)
T ss_pred hhhh
Confidence 4443
No 82
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=94.36 E-value=0.13 Score=40.78 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=38.2
Q ss_pred Cccc-hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhheeeeeC
Q 002018 547 WKFH-HWSLSLLGSVFCIVIMFLI---SWSFTVVSLALASLIYYYVCLKG 592 (980)
Q Consensus 547 f~~~-~~~~~l~g~i~~~~~~~~~---~~~~~~~~l~i~~~l~~~~~~~~ 592 (980)
||.| -++++.+++++++++|..+ +|..+.+|+++++++|+.+++|+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeec
Confidence 3444 3578999999999999886 57889999999999999888774
No 83
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=94.20 E-value=16 Score=43.64 Aligned_cols=34 Identities=9% Similarity=0.070 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 002018 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (980)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg 474 (980)
.+..-++.++++.+.+|++.+.+.+.+=+ +++|=
T Consensus 317 ~~l~gl~~a~ilaA~mST~~s~l~s~ss~---~~~Di 350 (487)
T TIGR02121 317 PWIAGILLAAILAAIMSTISSQLLVSSSA---LTEDF 350 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 33456777888888888888888887644 45563
No 84
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=93.71 E-value=20 Score=43.02 Aligned_cols=35 Identities=11% Similarity=0.043 Sum_probs=25.8
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 002018 437 AWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (980)
Q Consensus 437 ~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg 474 (980)
..++.-++.++++.+.+|++.+.+.+.+=+ +++|=
T Consensus 323 p~~l~gl~~a~ilAA~mST~~s~l~a~ss~---~~~Di 357 (502)
T PRK15419 323 NPWIAGILLSAILAAVMSTLSCQLLVCSSA---ITEDL 357 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 344567888888999999999988888743 45563
No 85
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=92.65 E-value=5.2 Score=47.07 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=70.2
Q ss_pred HHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHH-HHHHHHHHHHHHHhhccchhhhhhhhhhHhhccCchHHHHHH
Q 002018 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATL-TTTALYVISVLLFGAAATREELLTDRLLTATIAWPFPAVIHI 446 (980)
Q Consensus 368 f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~-~~~v~Yil~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ii~~ 446 (980)
++..|-+.||-|+--.=-|-. -+|.|-+|-...+. ...+=|+.--..+. ...+...+|+....-.|..-+.+..
T Consensus 223 LGaVfLavTGaEALYADmGHf--Gr~pI~~AWf~vv~P~L~LNY~GQGA~vL---~~p~a~~npFF~~~P~~aliP~viL 297 (627)
T COG3158 223 LGAVFLAVTGAEALYADMGHF--GRKPIRVAWFFVVLPCLLLNYFGQGALLL---SNPEAIGNPFFLLAPDWALIPLVIL 297 (627)
T ss_pred eeeeeeeeccHHHHHhhcccc--CCccHHHHHHHHHHHHHHHHHccccceec---cCcccccCcHHHhChhhHHHHHHHH
Confidence 455666889999865322222 35777666555444 33333443111111 1111233444443333332222222
Q ss_pred HHHHHHHHHHHHHhhhhHHHH-HHHhcCCCCCccceeecCCC-----CCchhhHHHHHHHHhhhhccccccchhhhhHHH
Q 002018 447 GIILSTLGAALQSLTGAPRLL-AAIANDDILPVLNYFKVAEG-----REPHIATFFTAFICIGCVIIGNLDLITPTITMF 520 (980)
Q Consensus 447 ~il~s~lss~~s~l~~asR~L-~alArDg~lP~~~~~~~~~~-----g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~ 520 (980)
..+.+.+. . +++.+.+=.| ..--+-|++|+....+.+.. -.|..-.++...+.++.+.+++-+.+++..++.
T Consensus 298 AT~ATVIA-S-QAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiA 375 (627)
T COG3158 298 ATAATVIA-S-QAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIA 375 (627)
T ss_pred HHHHHHHH-H-HHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChh
Confidence 22222221 1 2222222222 23337799999755544432 246554444444444444556777777776665
Q ss_pred HHHHH
Q 002018 521 FLLCY 525 (980)
Q Consensus 521 ~ll~y 525 (980)
.--+-
T Consensus 376 VTgtM 380 (627)
T COG3158 376 VTGTM 380 (627)
T ss_pred eeehh
Confidence 44433
No 86
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=91.63 E-value=0.053 Score=64.30 Aligned_cols=60 Identities=8% Similarity=-0.144 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCCccEEEEecCCCCCCCChhcHHHHHHHhhcCCCceEEEccCCceeeeec
Q 002018 918 TLKLNSTILRHSRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVPRLLIVRGYRRDVVTLF 979 (980)
Q Consensus 918 ~~~lneli~~~S~~a~lv~~~LP~p~~~~~~~~Ym~~l~~lt~~l~p~llVrG~~~~v~t~y 979 (980)
....|+.++..|.+++..-.+=|.|.|-.....|+++++.++++ ++++.+|....+++.+
T Consensus 943 ~~d~~~~~~~~s~~s~~~~~~~~~~~~~~~~~t~~k~~~~~~~~--~~~~~~~k~~~~~~~~ 1002 (1075)
T KOG2082|consen 943 IHDRNAPRRPSSLHSDEARPFETAPTKVQMTWTRDKYMASTSNP--AFSLSGFKDLFSMKPD 1002 (1075)
T ss_pred chhcCCccccccccccccccCCCCCcceechhhhhhHHHhccCC--cchhccCCcccccChh
Confidence 34566777777888888777722233334557899999999887 8999999998888765
No 87
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=91.33 E-value=34 Score=39.87 Aligned_cols=54 Identities=22% Similarity=0.135 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhhHHHHHHhhhcccccccc-cchhHHHHHHHHHHHHHHHHHHH
Q 002018 362 WSFNALVGLFFPAVTGIMAGSNRSASLKDTQ-RSIPIGTLAATLTTTALYVISVL 415 (980)
Q Consensus 362 ~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~-ksIP~a~~~si~~~~v~Yil~~~ 415 (980)
++++.++.+++++|+.-..+.-.-.|+|||+ |++-+....++...+++|+....
T Consensus 194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~ 248 (411)
T KOG1305|consen 194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGL 248 (411)
T ss_pred hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688889999999999999999999999997 68888889999999999986443
No 88
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=91.13 E-value=11 Score=43.83 Aligned_cols=39 Identities=15% Similarity=0.223 Sum_probs=27.8
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCC
Q 002018 436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILP 477 (980)
Q Consensus 436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP 477 (980)
.+.+..-++.++++.+.+|++.+.+.+.+=+ +++|=+-|
T Consensus 289 ~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~---~~~Di~~~ 327 (406)
T PF00474_consen 289 LPPGLAGLFLAGILAAIMSTADSLLLAISSI---FSRDIYKP 327 (406)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHCCCC
T ss_pred ccchhHHHHHHHHHHhhhHHHHHHHhhhhhh---hhHHhhhc
Confidence 3445567778888889999998888887754 46775554
No 89
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=91.12 E-value=36 Score=39.66 Aligned_cols=95 Identities=15% Similarity=0.094 Sum_probs=55.1
Q ss_pred ccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHH
Q 002018 196 KGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQI 275 (980)
Q Consensus 196 ~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i 275 (980)
.+-|--.-+++.++|.+++..-....++.+.+.-.+..|.+-.+...+.. + ..
T Consensus 75 TG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~i--------------------------p-~~ 127 (416)
T COG1914 75 TGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGI--------------------------P-LI 127 (416)
T ss_pred hCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------------------------h-HH
Confidence 34456667777888888877766666666666666666665555544321 1 13
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheee
Q 002018 276 YGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGIL 318 (980)
Q Consensus 276 ~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~ 318 (980)
++.++..+..++-+.+- .+.++|.+...+.++.+++++...+
T Consensus 128 ~g~iItav~~~iil~~~-~~r~~E~~v~~l~~~~~i~~~~~~~ 169 (416)
T COG1914 128 IGAVITAVDVLIILLLK-GYRLLERVVLILGLVLVILFVYVAF 169 (416)
T ss_pred HHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444433332 6777888777766666665544433
No 90
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=89.81 E-value=55 Score=39.79 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcC
Q 002018 442 AVIHIGIILSTLGAALQSLTGAPRLLAAIAND 473 (980)
Q Consensus 442 ~ii~~~il~s~lss~~s~l~~asR~L~alArD 473 (980)
-++.++++.+.+|+..+.+.+.+- .+++|
T Consensus 357 glv~A~~~AA~mST~~s~l~a~st---~i~~D 385 (549)
T TIGR02711 357 GFISAVAFATILAVVAGLTLAGAS---AVSHD 385 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 356666666677777666666652 34455
No 91
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=89.48 E-value=48 Score=38.56 Aligned_cols=46 Identities=7% Similarity=-0.139 Sum_probs=30.8
Q ss_pred CchhhhHHHHhCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002018 198 GGPYYLIGRALGP-EVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (980)
Q Consensus 198 GG~y~~~sr~lgp-~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~ 243 (980)
=..+.|..+.+|+ ......++...+..+...+....+.+..+...+
T Consensus 66 ~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~ 112 (407)
T TIGR00813 66 YTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELIT 112 (407)
T ss_pred CchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788887 455556666666666677777777776666553
No 92
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=86.73 E-value=82 Score=38.07 Aligned_cols=111 Identities=18% Similarity=0.137 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhH-HHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHH-HHh---hcc-----chhhhh-hhh-
Q 002018 363 SFNALVGLFFPAVT-GIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVL-LFG---AAA-----TREELL-TDR- 430 (980)
Q Consensus 363 ~f~~~f~~~~~a~t-G~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~-~~g---~~~-----~~~~~~-~~~- 430 (980)
.+..+++.+||+.. |.-.....+.=.| -+.+++|-.......-.++.++..+ .+. ... +-++.. .++
T Consensus 250 vW~~A~~Q~ffsl~ig~G~~it~~Sy~~-~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~ 328 (523)
T PF00209_consen 250 VWIAALGQVFFSLSIGFGIMITYGSYNK-FKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPG 328 (523)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHTTS--TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHH
T ss_pred HHHHHHHHHhhccCCCcceEEEEcCcCC-CCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCC
Confidence 46788999998762 3333334443333 3577888777666666666653221 111 111 111111 111
Q ss_pred -----hhHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 002018 431 -----LLTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (980)
Q Consensus 431 -----~~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg 474 (980)
+..+....|.+.+..+..++..+.+++++..+.--.+-+.-.|.
T Consensus 329 L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i~~~E~iv~~l~d~ 377 (523)
T PF00209_consen 329 LAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQISMLEVIVSALMDE 377 (523)
T ss_dssp HHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcCCceeceeEeeeec
Confidence 01111223345666666666666666666666555555544454
No 93
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=86.67 E-value=8 Score=36.33 Aligned_cols=94 Identities=10% Similarity=0.053 Sum_probs=59.8
Q ss_pred eEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhcccceEEEEecCC
Q 002018 630 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAPN 709 (980)
Q Consensus 630 ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~~ 709 (980)
+||.++.. +...+++++|..+.+.....+.++||...+.....++.++..+.+.+..++.++. +.++...+
T Consensus 2 Ilv~vd~s-------~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~ 72 (124)
T cd01987 2 ILVCISGG-------PNAERLIRRAARLADRLKAPWYVVYVETPRLNRLSEAERRRLAEALRLAEELGAE--VVTLPGDD 72 (124)
T ss_pred EEEEECCC-------cchHHHHHHHHHHHHHhCCCEEEEEEecCccccCCHHHHHHHHHHHHHHHHcCCE--EEEEeCCc
Confidence 56666531 2344688999888876666778889987653322233344444555555544432 34455678
Q ss_pred hHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 710 MSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 710 ~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
..+++....+..+ .+.++||...
T Consensus 73 ~~~~I~~~~~~~~-----~dllviG~~~ 95 (124)
T cd01987 73 VAEAIVEFAREHN-----VTQIVVGKSR 95 (124)
T ss_pred HHHHHHHHHHHcC-----CCEEEeCCCC
Confidence 8888888877644 6899999874
No 94
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=84.91 E-value=87 Score=36.71 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhHHHHHHhh------hcccccccccchhHHHHHHHHHHHHHHHH
Q 002018 364 FNALVGLFFPAVTGIMAGSN------RSASLKDTQRSIPIGTLAATLTTTALYVI 412 (980)
Q Consensus 364 f~~~f~~~~~a~tG~ea~a~------~a~E~knP~ksIP~a~~~si~~~~v~Yil 412 (980)
....++..+--+.|+-.-.| ...+.|+.||++ .++.+.+.++|+.
T Consensus 236 ~i~~isl~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv----~wA~~fIg~fYi~ 286 (529)
T COG4147 236 PIDFISLGFALMVGTAGLPHILMRFFTVPDAKEARKSV----FWATGFIGIFYIL 286 (529)
T ss_pred HHHHHHHHHHHHHccCCCCeEEEEEEecCcHHHHHHHH----HHHHHHHHHHHHH
Confidence 34444444444455544444 457788888776 5666778888885
No 95
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=83.37 E-value=1.2e+02 Score=37.01 Aligned_cols=44 Identities=14% Similarity=0.008 Sum_probs=27.4
Q ss_pred chhhhHHHHhC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002018 199 GPYYLIGRALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (980)
Q Consensus 199 G~y~~~sr~lg-p~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~ 242 (980)
..|.|..+-+| +......++...+..+...+....+.+..+...
T Consensus 96 T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~ 140 (552)
T TIGR03648 96 TVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRF 140 (552)
T ss_pred cHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777 446777776666666655666666665555444
No 96
>PRK10484 putative transporter; Provisional
Probab=83.09 E-value=1.2e+02 Score=36.76 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=24.8
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcC
Q 002018 436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIAND 473 (980)
Q Consensus 436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArD 473 (980)
.+.+..-++.++++.+.+|++.+.+.+++=+ +++|
T Consensus 324 lp~~l~Gl~~a~ilAA~mST~~s~l~s~st~---~t~D 358 (523)
T PRK10484 324 LPVPLVGFFAAVLFGAILSTFNGFLNSASTL---FSLD 358 (523)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3444566788888888888888888777644 3455
No 97
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=81.23 E-value=1.2e+02 Score=35.62 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHH-HhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002018 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGR-ALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (980)
Q Consensus 164 G~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr-~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~ 242 (980)
+...++++.+++.++..+.....+-++. +.|=.+...+| .||..-....+....+..+.-.+......++.+...
T Consensus 40 ~~~~ailai~~G~~l~~i~~~~~~~~G~----r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~ 115 (440)
T PF02133_consen 40 SFWQAILAILIGNLLGAILVALMGIIGP----RTGLPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAAL 115 (440)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTHHHH----CC---HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccc----ccCCCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566776777766665555444444544 45555555555 778665556666666666666666666666666654
Q ss_pred cc
Q 002018 243 VP 244 (980)
Q Consensus 243 ~p 244 (980)
++
T Consensus 116 ~~ 117 (440)
T PF02133_consen 116 LG 117 (440)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 98
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=75.28 E-value=35 Score=31.41 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=49.4
Q ss_pred CchhhhhhHHHhhhCCCeeEEEEEEecCCCccc----hHHHHHHHHHHHHHHH---hhcccceEEEEecCChHHHHHHHH
Q 002018 646 CHPKLADFANCMKKKGRGMSIFVSILDGDYHEC----AEDAKTACKQLATYID---YKRCEGVAEIVVAPNMSEGFRGIV 718 (980)
Q Consensus 646 ~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~---~~~~~~f~~~~~a~~~~~g~~~l~ 718 (980)
....++++|..+.+...+-+.+++|..+..... .....+.++.++++.+ ..++..-..+...+ ..+++....
T Consensus 11 ~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~ 89 (130)
T cd00293 11 ESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVETVVLEGD-PAEAILEAA 89 (130)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEecCC-CHHHHHHHH
Confidence 355788999999887666778888876543221 1122233334444443 33444334444333 355666665
Q ss_pred HHhCCCCCCCcEEEecCcc
Q 002018 719 QTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 719 q~~GlG~l~PNtv~lg~~~ 737 (980)
+. -+++.+++|...
T Consensus 90 ~~-----~~~dlvvig~~~ 103 (130)
T cd00293 90 EE-----LGADLIVMGSRG 103 (130)
T ss_pred HH-----cCCCEEEEcCCC
Confidence 55 348999999854
No 99
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=74.04 E-value=44 Score=31.33 Aligned_cols=97 Identities=11% Similarity=0.163 Sum_probs=57.0
Q ss_pred eEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCccc-------hHHHHHHHHHHHHHHHhhcccceE
Q 002018 630 PLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHEC-------AEDAKTACKQLATYIDYKRCEGVA 702 (980)
Q Consensus 630 ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~f~ 702 (980)
+||.++. .+....++++|..|.+...+-+.++|+++...... .++.++..+...+..++..++.=.
T Consensus 2 ILv~vd~-------s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 74 (132)
T cd01988 2 ILVPVAN-------PNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHT 74 (132)
T ss_pred EEEecCC-------chhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEE
Confidence 5666643 13455789999999987667788889986532211 111122223344444444554222
Q ss_pred EEEecCChHHHHHHHHHHhCCCCCCCcEEEecCccc
Q 002018 703 EIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEI 738 (980)
Q Consensus 703 ~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~ 738 (980)
.+..+.+..+.+..+.+. .+...|+||....
T Consensus 75 ~~~~~~~~~~~I~~~a~~-----~~~dlIV~G~~~~ 105 (132)
T cd01988 75 IIRIDHDIASGILRTAKE-----RQADLIIMGWHGS 105 (132)
T ss_pred EEEecCCHHHHHHHHHHh-----cCCCEEEEecCCC
Confidence 233456777777776664 4578999998754
No 100
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=71.48 E-value=2.2e+02 Score=33.76 Aligned_cols=37 Identities=11% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHH-HHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHH
Q 002018 275 IYGII-VTIILCFIVFGGVKIINRVAPTFLIPVLLSIF 311 (980)
Q Consensus 275 i~~~i-~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~ 311 (980)
+++.+ +.++...+-..|++...+++.+-..++.+..+
T Consensus 172 ~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~ 209 (497)
T COG1953 172 LICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAML 209 (497)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHH
Confidence 44443 33444455578999999999887766666555
No 101
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=71.14 E-value=42 Score=37.30 Aligned_cols=134 Identities=16% Similarity=0.188 Sum_probs=77.8
Q ss_pred hhhhhhhcccchhHHHHHHHHHHHHHHHHH---HHHHHHHcCC-ccccCchhhhHHHH-hCchhh-HHHHHHHHHHHHHH
Q 002018 154 IRFTWIVGMGGIGDSLLVVAFCGSCTFLTS---ISLSAIATNG-AMKGGGPYYLIGRA-LGPEVG-VSIGLCFFLGNAVA 227 (980)
Q Consensus 154 l~~g~~lg~aG~~~~li~~li~~~i~~~~~---ls~aElat~~-~p~~GG~y~~~sr~-lgp~~G-f~~Gw~~~l~~~~~ 227 (980)
++++.++-.+|.++...+..++.++.+..- .|+-|=.-.| ..+---.|.=+..+ ++|.+| -.+-....+..+.+
T Consensus 136 vgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmT 215 (524)
T KOG4303|consen 136 VGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMT 215 (524)
T ss_pred eccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHH
Confidence 344667777887777666666666554322 2222211111 11222356666665 889988 45555667777888
Q ss_pred HHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHH
Q 002018 228 GAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVL 307 (980)
Q Consensus 228 ~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~i 307 (980)
+-+|++..++.+..-+|...+ +...+.++..++++-+.++ -..|...++.++.++-.+
T Consensus 216 CIlYvVv~gdLl~~~fP~~sv--------------------d~~sWm~i~~a~LLpc~FL--k~Lk~VS~lSf~ct~sH~ 273 (524)
T KOG4303|consen 216 CILYVVVAGDLLQSCFPGLSV--------------------DKASWMMITSASLLPCSFL--KDLKIVSRLSFFCTISHL 273 (524)
T ss_pred HHhhhheechhhhccCCCCCc--------------------cccchhhhhhHHHhhhHHH--HHHHHHHHHHHHHHHHHH
Confidence 889999888888888886421 1112234445555444433 456777888777665554
Q ss_pred HH
Q 002018 308 LS 309 (980)
Q Consensus 308 l~ 309 (980)
++
T Consensus 274 vi 275 (524)
T KOG4303|consen 274 VI 275 (524)
T ss_pred HH
Confidence 43
No 102
>PF04531 Phage_holin_1: Bacteriophage holin; InterPro: IPR006485 Phage proteins for bacterial lysis typically include a membrane-disrupting protein, or holin, and one or more cell wall degrading enzymes that reach the cell wall because of holin action. Holins are found in a large number of mutually non-homologous families. This entry is represented by the Bacteriophage phi-LC3, holin. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=65.04 E-value=25 Score=31.11 Aligned_cols=66 Identities=15% Similarity=0.318 Sum_probs=39.4
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHHH--HH--H--------HHHHHHHHHHHhhheeeeeCCCCCCCchhHHHHHH
Q 002018 542 SWRPRWKFHHWSLSLLGSVFCIVIMFLI--SW--S--------FTVVSLALASLIYYYVCLKGKAGDWGDGLKSAYFQ 607 (980)
Q Consensus 542 ~~r~~f~~~~~~~~l~g~i~~~~~~~~~--~~--~--------~~~~~l~i~~~l~~~~~~~~~~~~wG~~~~~~~~~ 607 (980)
+|+-+||-+.+|++++++++.++-.+.. +| . ...+..++.++..+-+---..++.-+|+.|++.|+
T Consensus 3 NwKvR~kN~~~w~ali~~i~l~vq~~~~~fg~~~~~~~~~~~i~~~v~~vl~iL~~~Gii~DPTT~G~sDS~~al~y~ 80 (84)
T PF04531_consen 3 NWKVRFKNKAFWVALISAILLLVQQVGGLFGWGADFDVLLDQISNIVNAVLTILVILGIINDPTTKGISDSEQALTYK 80 (84)
T ss_pred chhhcccCHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHheeeeCCCCCCCCcHHHHHhcc
Confidence 6778888888899999888877755543 33 1 11122222222223233333456788999888775
No 103
>PRK12488 acetate permease; Provisional
Probab=64.39 E-value=3.3e+02 Score=33.11 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=21.4
Q ss_pred hHHHHhC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002018 203 LIGRALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (980)
Q Consensus 203 ~~sr~lg-p~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~ 242 (980)
|..+-+| +......+....+..+.-.+....+.+..+...
T Consensus 135 ~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l 175 (549)
T PRK12488 135 VVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELL 175 (549)
T ss_pred HHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555 556666666555554444455555555444443
No 104
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=61.34 E-value=3.5e+02 Score=32.35 Aligned_cols=90 Identities=16% Similarity=0.096 Sum_probs=51.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC-CCCccceeecCCCCCchhhHHH--HHHHHhhhhccccccc--
Q 002018 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD-ILPVLNYFKVAEGREPHIATFF--TAFICIGCVIIGNLDL-- 512 (980)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg-~lP~~~~~~~~~~g~P~~Aill--~~~i~~l~~l~~~~~~-- 512 (980)
-|+..++....++.++....++.-+++.++-.++.+| .=| .++.+..+. .++++.++++.+.++.
T Consensus 388 lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep----------~~~~ri~W~~~~~~~a~~ll~~ggl~~lq 457 (485)
T PF02028_consen 388 LPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEP----------PRWLRIFWGLIIGALAIVLLLIGGLDALQ 457 (485)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-----------HHHHHHHHHHHHHHHHHHHHHHSSHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCC----------chHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4566677666666677777777777788888888776 111 112222221 2233344444455554
Q ss_pred -hhhhhHHHHHHHHHHHHHHHHHhhh
Q 002018 513 -ITPTITMFFLLCYSGVNLSCFLLDL 537 (980)
Q Consensus 513 -l~~i~s~~~ll~y~~i~la~~~~r~ 537 (980)
+..+.++.+.+...+++++.++.-+
T Consensus 458 ~~~ii~~lP~~~v~~~~~~~~~k~l~ 483 (485)
T PF02028_consen 458 SASIIGGLPFSFVMLLMCISFIKALK 483 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666666666666666665543
No 105
>PRK09395 actP acetate permease; Provisional
Probab=54.37 E-value=4.8e+02 Score=31.75 Aligned_cols=40 Identities=10% Similarity=-0.081 Sum_probs=21.8
Q ss_pred hHHHHhC-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002018 203 LIGRALG-PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (980)
Q Consensus 203 ~~sr~lg-p~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~ 242 (980)
|..+-+| +......+....+..+...+....+.+..+...
T Consensus 137 ~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~ 177 (551)
T PRK09395 137 VASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLL 177 (551)
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446666 456666666655555444455555555444443
No 106
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=51.97 E-value=1.9e+02 Score=26.52 Aligned_cols=97 Identities=8% Similarity=0.056 Sum_probs=60.5
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCccchHHHH-HHHHHHH-----------HHHHhh
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAK-TACKQLA-----------TYIDYK 696 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~ 696 (980)
.+||.++.. +....++++|-.+.+...+-+.++||.+........... .....+. ......
T Consensus 4 ~Ilv~~d~~-------~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (140)
T PF00582_consen 4 RILVAIDGS-------EESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAE 76 (140)
T ss_dssp EEEEEESSS-------HHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCC-------HHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhh
Confidence 467777531 234478888888887656677888998765332221111 1111111 112334
Q ss_pred cccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 697 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 697 ~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
........+...+..+++....+.. +++.|+||...
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~~~~~~-----~~dliv~G~~~ 112 (140)
T PF00582_consen 77 GGIVIEVVIESGDVADAIIEFAEEH-----NADLIVMGSRG 112 (140)
T ss_dssp TTSEEEEEEEESSHHHHHHHHHHHT-----TCSEEEEESSS
T ss_pred ccceeEEEEEeeccchhhhhccccc-----cceeEEEeccC
Confidence 5566778888889988888887764 49999999876
No 107
>PRK09950 putative transporter; Provisional
Probab=44.54 E-value=6.4e+02 Score=30.35 Aligned_cols=96 Identities=11% Similarity=0.032 Sum_probs=52.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcccc-ccc---h
Q 002018 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGN-LDL---I 513 (980)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~-~~~---l 513 (980)
-|++.++.+..++.++....++.-+++-++-.++..|.-+.- .-++..+=.+++++. ++++.+++.+. ++. +
T Consensus 398 lP~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~---~P~~~~ri~W~i~~g-~ia~~Ll~~gG~l~~lQ~~ 473 (506)
T PRK09950 398 LPAGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGD---DPDRGLRLFWCVVIT-LIPLSILFTGASLDTMKTT 473 (506)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCC---CCCcchhHHHHHHHH-HHHHHHHHhCCcHHHHHHH
Confidence 456677777777777777777777788888888776653321 001122234444443 33334444443 554 4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhh
Q 002018 514 TPTITMFFLLCYSGVNLSCFLLDL 537 (980)
Q Consensus 514 ~~i~s~~~ll~y~~i~la~~~~r~ 537 (980)
+.+.++.+.+...+++++.++.-+
T Consensus 474 ~ii~alP~~~i~~l~~~s~~k~l~ 497 (506)
T PRK09950 474 VVLTALPFLVILLIKVYGFIRWLK 497 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555566666554443
No 108
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=42.89 E-value=3.2e+02 Score=31.55 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=49.7
Q ss_pred hhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHH
Q 002018 202 YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVT 281 (980)
Q Consensus 202 ~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l 281 (980)
..+.+.+|+.=+...+....++...++-..+.+++|++...+|.. ....+.+++.
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~-------------------------~y~~~v~~~~ 313 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKL-------------------------SYKTWVIVFT 313 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------------------------CHHHHHHHHH
Confidence 567788999888888988888888777777788899988775531 2234555555
Q ss_pred HHHHHHHHhhhhHHHH
Q 002018 282 IILCFIVFGGVKIINR 297 (980)
Q Consensus 282 ~~~~~in~~Gvk~~~~ 297 (980)
++..++...|....-+
T Consensus 314 l~s~~ia~~Gl~~Ii~ 329 (378)
T TIGR00796 314 LFSFIVANLGLTQIIS 329 (378)
T ss_pred HHHHHHHHhCHHHHHH
Confidence 5555666667665544
No 109
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.23 E-value=8.9 Score=40.98 Aligned_cols=15 Identities=20% Similarity=0.519 Sum_probs=0.0
Q ss_pred CCCCchhhHHHHHHH
Q 002018 486 EGREPHIATFFTAFI 500 (980)
Q Consensus 486 ~~g~P~~Aill~~~i 500 (980)
|.-.|...+++..++
T Consensus 17 r~p~~~a~l~~~~ll 31 (381)
T PF05297_consen 17 RCPQPHASLLFGLLL 31 (381)
T ss_dssp ---------------
T ss_pred CCCCcchhHHHHHHH
Confidence 334555555554443
No 110
>COG4025 Predicted membrane protein [Function unknown]
Probab=40.72 E-value=2.1e+02 Score=30.24 Aligned_cols=17 Identities=6% Similarity=0.088 Sum_probs=13.5
Q ss_pred hhHHHHHHHhcCCCCCc
Q 002018 462 GAPRLLAAIANDDILPV 478 (980)
Q Consensus 462 ~asR~L~alArDg~lP~ 478 (980)
..-|-...++|++.+|.
T Consensus 55 ~~ve~v~e~~re~~i~~ 71 (284)
T COG4025 55 SKVEKVMEKVREFQIPL 71 (284)
T ss_pred HHHHHHHHHHhcCCCcC
Confidence 45577889999999873
No 111
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=39.35 E-value=3.4e+02 Score=25.80 Aligned_cols=27 Identities=7% Similarity=-0.059 Sum_probs=19.1
Q ss_pred chhhhhhHHHhhhCCCeeEEEEEEecC
Q 002018 647 HPKLADFANCMKKKGRGMSIFVSILDG 673 (980)
Q Consensus 647 ~~~L~~fa~~l~k~g~g~~~~~~v~~~ 673 (980)
..+.+++|..+.+...+.+.++||++.
T Consensus 12 s~~al~~a~~~a~~~~~~l~ll~v~~~ 38 (146)
T cd01989 12 SKNALKWALDNLATKGQTIVLVHVHPP 38 (146)
T ss_pred cHHHHHHHHHhccCCCCcEEEEEeccC
Confidence 446779998887654456777888754
No 112
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=37.36 E-value=2.3e+02 Score=33.20 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=53.2
Q ss_pred hhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHH
Q 002018 202 YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVT 281 (980)
Q Consensus 202 ~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l 281 (980)
..+.+.+|+.=....|....++...++---..+++||+...+|.. ..+.+.+++.
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki-------------------------sY~~~v~i~~ 319 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI-------------------------SYKVWVIIFT 319 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------------------ChHHHHHHHH
Confidence 355567888888888888888887777666778899998887632 2346777777
Q ss_pred HHHHHHHHhhhhHHHHHh
Q 002018 282 IILCFIVFGGVKIINRVA 299 (980)
Q Consensus 282 ~~~~~in~~Gvk~~~~~~ 299 (980)
++-.++..+|+...-++.
T Consensus 320 i~S~~ian~Gl~~Ii~~s 337 (427)
T PF05525_consen 320 IFSFIIANLGLDQIIKIS 337 (427)
T ss_pred HHHHHHHHhCHHHHHHHH
Confidence 777888888876554443
No 113
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=36.02 E-value=3.1e+02 Score=32.22 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=54.1
Q ss_pred hhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHH
Q 002018 202 YLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVT 281 (980)
Q Consensus 202 ~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l 281 (980)
.++.+.+|+.-+...+...+++...++-..+.+++|++...++ . ..+.+..++.
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i-------------------------sY~~~v~i~~ 322 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L-------------------------SYRTLVFILG 322 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C-------------------------cHHHHHHHHH
Confidence 3566789999999999999999888888888899999887654 1 2246667777
Q ss_pred HHHHHHHHhhhhHHHHHh
Q 002018 282 IILCFIVFGGVKIINRVA 299 (980)
Q Consensus 282 ~~~~~in~~Gvk~~~~~~ 299 (980)
++...+..+|....-+..
T Consensus 323 l~S~~lSn~G~~~II~~s 340 (439)
T PRK15433 323 GFSMVVSNLGLSQLIQIS 340 (439)
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 777777778876554443
No 114
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=31.14 E-value=8.4e+02 Score=29.97 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhcccceEEEEecCChHHHHHHHHHHhCC
Q 002018 685 ACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGL 723 (980)
Q Consensus 685 ~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~Gl 723 (980)
..++..+.+++++-..+ -.+.+|++.--+...+...|+
T Consensus 298 ~~~~l~~~i~~~kPD~v-IlID~PgFNlrLAK~lkk~Gi 335 (608)
T PRK01021 298 RYRKLYKTILKTNPRTV-ICIDFPDFHFLLIKKLRKRGY 335 (608)
T ss_pred HHHHHHHHHHhcCCCEE-EEeCCCCCCHHHHHHHHhcCC
Confidence 34556667776675555 346788888878888888765
No 115
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=29.85 E-value=6.2e+02 Score=25.85 Aligned_cols=24 Identities=8% Similarity=0.039 Sum_probs=14.7
Q ss_pred CCCchhhHHHHHHHHhhhhccccc
Q 002018 487 GREPHIATFFTAFICIGCVIIGNL 510 (980)
Q Consensus 487 ~g~P~~Aill~~~i~~l~~l~~~~ 510 (980)
...+..++...++++.+.+-+.+.
T Consensus 74 ~~~~~~~~~~a~lv~al~fafS~s 97 (178)
T PF11028_consen 74 STAQTIAILGAGLVGALAFAFSDS 97 (178)
T ss_pred chhhHHHHHHHHHHHHHHHHhhHH
Confidence 345666677777777666555543
No 116
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=29.34 E-value=9.4e+02 Score=27.83 Aligned_cols=36 Identities=3% Similarity=0.094 Sum_probs=27.6
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 002018 435 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAI 470 (980)
Q Consensus 435 ~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~al 470 (980)
..+.....++.++.+.|.++|..++-++..=+....
T Consensus 289 ~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 289 LFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445688889999999999999988777666554
No 117
>PTZ00206 amino acid transporter; Provisional
Probab=28.75 E-value=1e+03 Score=28.13 Aligned_cols=46 Identities=9% Similarity=-0.010 Sum_probs=36.2
Q ss_pred hHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCC
Q 002018 432 LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILP 477 (980)
Q Consensus 432 ~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP 477 (980)
....++.+..+++++.+++..++++.+.+......+..+-.....|
T Consensus 127 a~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~ 172 (467)
T PTZ00206 127 ARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP 172 (467)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3445566678999999999999999999999999888776544344
No 118
>PF14256 YwiC: YwiC-like protein
Probab=27.49 E-value=3.6e+02 Score=25.91 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=5.4
Q ss_pred heeeeeCCCCC
Q 002018 586 YYVCLKGKAGD 596 (980)
Q Consensus 586 ~~~~~~~~~~~ 596 (980)
.++.+|++++.
T Consensus 98 ~~~~~~~~eRs 108 (129)
T PF14256_consen 98 LYFAKRKRERS 108 (129)
T ss_pred HHHHHhcCchh
Confidence 34445555554
No 119
>PRK15005 universal stress protein F; Provisional
Probab=26.22 E-value=5.6e+02 Score=24.18 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=49.5
Q ss_pred ceEEeeCCCCCCCCCCCC-chhhhhhHHHhhhCCCeeEEEEEEecCC-Cc--------cch---H-HHHHHHHHHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPC-HPKLADFANCMKKKGRGMSIFVSILDGD-YH--------ECA---E-DAKTACKQLATYID 694 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~-~~~L~~fa~~l~k~g~g~~~~~~v~~~~-~~--------~~~---~-~~~~~~~~~~~~~~ 694 (980)
.+|+.++... .. ..+++++|..+.+.....+.++||++.. .. ... + ..++..+.++++.+
T Consensus 4 ~ILv~~D~s~------~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (144)
T PRK15005 4 TILVPIDISD------SELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIK 77 (144)
T ss_pred cEEEecCCCc------hhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 4677775321 11 2467899998887656667788888531 10 000 1 11223344555555
Q ss_pred hhcccc--eEEEEecCChHHHHHHHHHHhCCCCCCCcEEEec
Q 002018 695 YKRCEG--VAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMR 734 (980)
Q Consensus 695 ~~~~~~--f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg 734 (980)
..+..+ +...+...+..+.+....+. ..++.|+||
T Consensus 78 ~~~~~~~~~~~~v~~G~p~~~I~~~a~~-----~~~DLIV~G 114 (144)
T PRK15005 78 KFKLPTDRVHVHVEEGSPKDRILELAKK-----IPADMIIIA 114 (144)
T ss_pred HhCCCCCceEEEEeCCCHHHHHHHHHHH-----cCCCEEEEe
Confidence 444433 22233344565555555443 357788887
No 120
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=25.67 E-value=6.8e+02 Score=33.22 Aligned_cols=28 Identities=11% Similarity=0.046 Sum_probs=19.2
Q ss_pred eEEEEEEecCCchHHHHHHHHHHHHHHc
Q 002018 814 KIQVFCIAEEDSDAEVLKADVKKFLYDL 841 (980)
Q Consensus 814 klRvf~~~~~~~~~~~~~~~l~~ll~~~ 841 (980)
++.+-.-+..++|.++.++-+.+.+++-
T Consensus 992 Rv~i~VgV~Y~sDie~v~~iL~eaa~~~ 1019 (1109)
T PRK10929 992 RVVLTIPAPADANSEEVTEILLTAARRC 1019 (1109)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3444344567788999998888776653
No 121
>PRK09928 choline transport protein BetT; Provisional
Probab=25.63 E-value=1.4e+03 Score=28.58 Aligned_cols=72 Identities=7% Similarity=0.014 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccccccch
Q 002018 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLI 513 (980)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~~~~l 513 (980)
.|++.++.+..++.++.-..++.-+++-++-.++-.|.-|.- .-++..+=.+++++. ++++.+++.+.++.+
T Consensus 405 lP~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~---~pp~~~RifW~v~ig-~la~~LL~~GGL~aL 476 (679)
T PRK09928 405 YPAFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINS---DAPNWLRVFWSVAIG-LLTLGMLMTNGISAL 476 (679)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCC---CCCcceeeHHHHHHH-HHHHHHHHhcCHHHH
Confidence 355566666666666666666667777778788776643321 011222334454444 344444445555543
No 122
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=25.03 E-value=1e+03 Score=26.95 Aligned_cols=50 Identities=22% Similarity=0.553 Sum_probs=30.7
Q ss_pred CCCCC-CCCCccchhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhee
Q 002018 539 DAPSW-RPRWKFHHWSLSLLGSVFCIVIMFLIS------WSFTVVSLALASLIYYYV 588 (980)
Q Consensus 539 ~~p~~-r~~f~~~~~~~~l~g~i~~~~~~~~~~------~~~~~~~l~i~~~l~~~~ 588 (980)
+.++| .++|+....++++.|..+.++++|... -+.-++-++++.++|++.
T Consensus 203 kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~ 259 (342)
T COG0798 203 KGREWYESRFLPKISPIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLL 259 (342)
T ss_pred ccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHH
Confidence 44443 344543344678999999999998853 223344555666777654
No 123
>PRK11175 universal stress protein UspE; Provisional
Probab=24.48 E-value=4.5e+02 Score=28.73 Aligned_cols=110 Identities=11% Similarity=-0.002 Sum_probs=59.2
Q ss_pred hhhhhHHHhhhCC-CeeEEEEEEecCCCcc--------chHH----H-HHHHHHHHHHHHhhcccceEEEEecCChHHHH
Q 002018 649 KLADFANCMKKKG-RGMSIFVSILDGDYHE--------CAED----A-KTACKQLATYIDYKRCEGVAEIVVAPNMSEGF 714 (980)
Q Consensus 649 ~L~~fa~~l~k~g-~g~~~~~~v~~~~~~~--------~~~~----~-~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~ 714 (980)
.++++|..+.+.. .+-+.++||....... ..++ . ++..+.++++.+..++......+...+..+.+
T Consensus 174 ~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~G~~~~~I 253 (305)
T PRK11175 174 KLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLLAMKALRQKFGIDEEQTHVEEGLPEEVI 253 (305)
T ss_pred HHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHHHHHHHHHHHHhCCChhheeeccCCHHHHH
Confidence 5778888887654 5567778887532110 0111 1 12233455666655554432334445677777
Q ss_pred HHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHH-HHHHH-HhhcceEEEEe
Q 002018 715 RGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVG-IINDC-IVANKAVVIVK 769 (980)
Q Consensus 715 ~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~-~i~~~-~~~~~~v~i~r 769 (980)
....+.. +.+.|+||-.....- .+-+.+ +.+.. ....+.|+++|
T Consensus 254 ~~~a~~~-----~~DLIVmG~~~~~~~------~~~llGS~a~~v~~~~~~pVLvv~ 299 (305)
T PRK11175 254 PDLAEHL-----DAELVILGTVGRTGL------SAAFLGNTAEHVIDHLNCDLLAIK 299 (305)
T ss_pred HHHHHHh-----CCCEEEECCCccCCC------cceeecchHHHHHhcCCCCEEEEc
Confidence 7776653 588999997543111 111111 12222 23678898887
No 124
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=24.47 E-value=2.1e+02 Score=29.75 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHHHHHhhHHHHHHhhhc---ccccccc-cchhHHHHHHHHHHHHHHHHHHHHH
Q 002018 366 ALVGLFFPAVTGIMAGSNRS---ASLKDTQ-RSIPIGTLAATLTTTALYVISVLLF 417 (980)
Q Consensus 366 ~~f~~~~~a~tG~ea~a~~a---~E~knP~-ksIP~a~~~si~~~~v~Yil~~~~~ 417 (980)
..|++.+|..--.-+.-|.. |-..||+ |.+|||++.+++.+.+.-++.+.+.
T Consensus 182 ~i~AvG~FfvNAVlaSYNIgGTIEGfHDPKFKr~p~~vias~vaS~~~gii~v~~~ 237 (240)
T PRK00968 182 GILAVGIFFVNAVLASYNIGGTIEGFHDPKFKRWPRAVIASFVASLVCGIVAVLMI 237 (240)
T ss_pred HHHHHHHHHHHHHHHhhccCceeecCCCcccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555444444444444 4567898 9999999999998888877665544
No 125
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=23.96 E-value=9e+02 Score=25.85 Aligned_cols=70 Identities=11% Similarity=-0.046 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhCchhhHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 002018 169 LLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALGPEVGVSI--GLCFFLGNAVAGAMYVLGAVETFL 240 (980)
Q Consensus 169 li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lgp~~Gf~~--Gw~~~l~~~~~~a~~~~~~~~~l~ 240 (980)
+++|++..+++--.+-=|++++--|.-..+ |.++.|+=+..-|..- -|+.|+-.+++.-+.+.++.+|+.
T Consensus 175 wIGFlltycl~tT~agRYGA~~GfGLsLik--wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll~lr~~i~Yik 246 (262)
T KOG4812|consen 175 WIGFLLTYCLTTTHAGRYGAISGFGLSLIK--WILIVRFSDDFESYFNGQYWLWWIFLVLGLLLFLRGFINYIK 246 (262)
T ss_pred HHHHHHHHHHHhhHhhhhhhhhccchhhhe--eeEEeecccccccccccchHHHHHHHHHHHHHHHHHHHhHHH
Confidence 445555555444444455566554444444 7788886666656555 333333334444455556666654
No 126
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=23.58 E-value=1.3e+03 Score=27.53 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCcc
Q 002018 441 PAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVL 479 (980)
Q Consensus 441 ~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~ 479 (980)
..++..+..++.++.-++.=..+ .++.--+++|++
T Consensus 344 vFfi~~~f~laql~~NISan~va----agnDl~~L~Pky 378 (572)
T KOG2466|consen 344 VFFIGFGFALAQLGTNISANSVA----AGNDLSALLPKY 378 (572)
T ss_pred hhHHHHHHHHHHHhcchhccccc----cchhhHhhCcce
Confidence 45666777777777544432222 244455789985
No 127
>COG5546 Small integral membrane protein [Function unknown]
Probab=23.48 E-value=1.4e+02 Score=25.45 Aligned_cols=66 Identities=17% Similarity=0.331 Sum_probs=35.2
Q ss_pred CCCCCCccchhhHHHHHHHHHHHHHHH----HHHHHHH---HHHHHHHHhhheeeeeCCCCCCCchhHHHHHH
Q 002018 542 SWRPRWKFHHWSLSLLGSVFCIVIMFL----ISWSFTV---VSLALASLIYYYVCLKGKAGDWGDGLKSAYFQ 607 (980)
Q Consensus 542 ~~r~~f~~~~~~~~l~g~i~~~~~~~~----~~~~~~~---~~l~i~~~l~~~~~~~~~~~~wG~~~~~~~~~ 607 (980)
+|.-++|-+.||++++|+++.+.-... +.|.+-+ +-.++.++...-+.--..++.-+|+-|++.|+
T Consensus 3 NwkvRmknkvf~vail~~ifllAQqll~~fGI~~~~nl~d~~n~i~~ll~llGVvqDPTT~gl~DSe~al~yn 75 (80)
T COG5546 3 NWKVRMKNKVFLVAILGAIFLLAQQLLGWFGIKLPSNLADIANTIVTLLVLLGVVQDPTTKGLSDSEQALTYN 75 (80)
T ss_pred ceEEEecCceehHHHHHHHHHHHHHHHHHeeeecchhHHHHHHHHHHHHHHHhcccCCcccCcccHHHHHhcc
Confidence 566667777889999998877664333 2232211 11122222222222233356777887777664
No 128
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=21.99 E-value=1.4e+02 Score=24.35 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHH
Q 002018 365 NALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVI 412 (980)
Q Consensus 365 ~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil 412 (980)
+.++-..++||.|.....+.-.|.++.+ |...+.+-++.++++++
T Consensus 2 ~~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV~ 46 (56)
T PF11174_consen 2 WQVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFVA 46 (56)
T ss_pred HHHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHHH
Confidence 4556677889999999888888876433 44444444444444443
No 129
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=21.66 E-value=6.9e+02 Score=23.63 Aligned_cols=122 Identities=11% Similarity=0.023 Sum_probs=60.7
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCcc-------chHH-HHHHH----HHHHHHHHhh
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE-------CAED-AKTAC----KQLATYIDYK 696 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~-------~~~~-~~~~~----~~~~~~~~~~ 696 (980)
+||+.++.. +.....++.|..|.+...+-+.++||....... ..++ .++.. +.++++.+..
T Consensus 5 ~ILvavD~S-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (144)
T PRK15118 5 HILIAVDLS-------PESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA 77 (144)
T ss_pred EEEEEccCC-------hhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC
Confidence 477777542 123467788888876544556777874321000 0011 11112 2233333333
Q ss_pred cccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHHHHHHH-hhcceEEEEec
Q 002018 697 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVKG 770 (980)
Q Consensus 697 ~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~i~~~~-~~~~~v~i~r~ 770 (980)
.+......+...+..+.+-...+. .+++.|+||=... ....+.++-+..+ ..++.|++.|.
T Consensus 78 ~~~~~~~~~~~G~p~~~I~~~a~~-----~~~DLIV~Gs~~~--------~~~~lgSva~~v~~~a~~pVLvv~~ 139 (144)
T PRK15118 78 GYPITETLSGSGDLGQVLVDAIKK-----YDMDLVVCGHHQD--------FWSKLMSSARQLINTVHVDMLIVPL 139 (144)
T ss_pred CCCceEEEEEecCHHHHHHHHHHH-----hCCCEEEEeCccc--------HHHHHHHHHHHHHhhCCCCEEEecC
Confidence 333322333355677666666655 3578899974321 1122333333333 35778888773
No 130
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=21.64 E-value=1.5e+03 Score=27.41 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=26.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC
Q 002018 438 WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDD 474 (980)
Q Consensus 438 ~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg 474 (980)
.|++.+..+..++..+.-..++.-+++-++..++..|
T Consensus 401 lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~ 437 (537)
T COG1292 401 LPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRG 437 (537)
T ss_pred CCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccC
Confidence 4556666666666666666677888888998888666
No 131
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=21.27 E-value=1.3e+03 Score=26.62 Aligned_cols=38 Identities=13% Similarity=-0.001 Sum_probs=26.3
Q ss_pred HHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 002018 206 RALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV 243 (980)
Q Consensus 206 r~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~ 243 (980)
|.=++..-+..+....+...........|.+..+....
T Consensus 115 RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~ 152 (473)
T COG4145 115 RYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL 152 (473)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44566777777777777777777777777776665543
No 132
>PRK09982 universal stress protein UspD; Provisional
Probab=20.72 E-value=7.4e+02 Score=23.61 Aligned_cols=122 Identities=13% Similarity=0.017 Sum_probs=63.0
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCc-------cchHHH-HHHHH----HHHHHHHhh
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH-------ECAEDA-KTACK----QLATYIDYK 696 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~-------~~~~~~-~~~~~----~~~~~~~~~ 696 (980)
.+||.++.. ....+.++.|..+++...+.+.++||++.... ...++. ++..+ .+++..+..
T Consensus 5 ~ILvavD~S-------~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (142)
T PRK09982 5 HIGVAISGN-------EEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNI 77 (142)
T ss_pred EEEEEecCC-------cchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 477777542 13346778888888766677888899754210 011111 11112 233333322
Q ss_pred cccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHHHHHHH-hhcceEEEEec
Q 002018 697 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVKG 770 (980)
Q Consensus 697 ~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~i~~~~-~~~~~v~i~r~ 770 (980)
+....-..+..-+..+.+....+. .+.+.++||= . +.. ...++.+-+..+ ..+.-|++.|-
T Consensus 78 ~~~~~~~~v~~G~p~~~I~~~A~~-----~~aDLIVmG~--~-~~~-----~~~~~~va~~V~~~s~~pVLvv~~ 139 (142)
T PRK09982 78 QWPKTKLRIERGEMPETLLEIMQK-----EQCDLLVCGH--H-HSF-----INRLMPAYRGMINKMSADLLIVPF 139 (142)
T ss_pred CCCcceEEEEecCHHHHHHHHHHH-----cCCCEEEEeC--C-hhH-----HHHHHHHHHHHHhcCCCCEEEecC
Confidence 222232333445777777776655 4479999992 2 211 123333333333 25677888763
No 133
>PRK11281 hypothetical protein; Provisional
Probab=20.53 E-value=8.8e+02 Score=32.27 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=16.4
Q ss_pred EEecCCchHHHHHHHHHHHHHHc
Q 002018 819 CIAEEDSDAEVLKADVKKFLYDL 841 (980)
Q Consensus 819 ~~~~~~~~~~~~~~~l~~ll~~~ 841 (980)
.-+..+++.++.++-+.+..++.
T Consensus 1000 vgV~Y~sDi~~v~~iL~eaa~~~ 1022 (1113)
T PRK11281 1000 VGVAYGSDLEKVRELLLQAATEN 1022 (1113)
T ss_pred EEeCCCCCHHHHHHHHHHHHHcC
Confidence 34566778888888887776653
No 134
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=20.47 E-value=2.2e+02 Score=28.41 Aligned_cols=54 Identities=19% Similarity=0.360 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhc---ccccccc-cchhHHHHHHHHHHHHHHHHHHHHH
Q 002018 364 FNALVGLFFPAVTGIMAGSNRS---ASLKDTQ-RSIPIGTLAATLTTTALYVISVLLF 417 (980)
Q Consensus 364 f~~~f~~~~~a~tG~ea~a~~a---~E~knP~-ksIP~a~~~si~~~~v~Yil~~~~~ 417 (980)
....|++.||...-.-+.-|.. |-..||+ |.+|||.+.+++.+.+.-++..+++
T Consensus 170 vA~m~AvG~FfiNAVlaSYNIGGTIEGfHDPKfkk~pk~vias~vasil~~iia~l~v 227 (230)
T COG4060 170 VAGMLAVGFFFINAVLASYNIGGTIEGFHDPKFKKLPKAVIASLVASILAGIIAVLLV 227 (230)
T ss_pred HHHHHHHHHHHhhhhhhhcccCceeecccChhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444443 5567998 9999999999888887777655443
No 135
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=20.41 E-value=79 Score=24.64 Aligned_cols=18 Identities=50% Similarity=0.706 Sum_probs=14.7
Q ss_pred hhHHHHhCchhhHHHHHH
Q 002018 202 YLIGRALGPEVGVSIGLC 219 (980)
Q Consensus 202 ~~~sr~lgp~~Gf~~Gw~ 219 (980)
+.++|.++|.+|.++|..
T Consensus 1 YLisr~lDP~~av~iG~~ 18 (47)
T PF11654_consen 1 YLISRFLDPLFAVFIGTS 18 (47)
T ss_pred CcchhhhhhHHHHHHHHH
Confidence 457899999999888854
Done!