Query 002018
Match_columns 980
No_of_seqs 591 out of 2956
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 08:53:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 8.9E-43 3E-47 408.1 34.8 413 130-596 7-435 (445)
2 4djk_A Probable glutamate/gamm 100.0 1.7E-42 5.9E-47 413.0 31.8 392 118-569 8-430 (511)
3 3gia_A Uncharacterized protein 100.0 7.3E-42 2.5E-46 400.3 35.1 380 130-571 5-392 (444)
4 3g40_A Na-K-CL cotransporter; 100.0 1.4E-35 4.7E-40 310.8 21.0 257 620-974 13-281 (294)
5 2jln_A MHP1; hydantoin, transp 98.3 0.00032 1.1E-08 82.3 29.6 255 164-470 57-329 (501)
6 2a65_A Leutaa, Na(+):neurotran 95.5 5 0.00017 46.6 27.9 313 137-475 12-371 (519)
7 3dh4_A Sodium/glucose cotransp 95.0 3.6 0.00012 48.1 25.2 41 435-478 316-356 (530)
8 2xq2_A Sodium/glucose cotransp 91.5 27 0.00092 41.2 25.2 37 436-475 346-382 (593)
9 3loq_A Universal stress protei 81.2 33 0.0011 36.0 16.3 195 629-850 24-235 (294)
10 3mt0_A Uncharacterized protein 79.8 62 0.0021 33.7 18.8 191 629-850 9-221 (290)
11 3ab8_A Putative uncharacterize 76.9 56 0.0019 33.5 16.2 193 629-850 2-220 (268)
12 3idf_A USP-like protein; unive 69.5 38 0.0013 30.6 11.3 94 629-737 3-111 (138)
13 3olq_A Universal stress protei 61.7 1.6E+02 0.0054 30.8 19.5 200 629-850 9-250 (319)
14 3tnj_A Universal stress protei 57.3 63 0.0022 29.6 10.5 97 629-737 8-119 (150)
15 3fdx_A Putative filament prote 54.1 99 0.0034 27.8 11.2 96 629-736 3-115 (143)
16 3fg9_A Protein of universal st 53.6 52 0.0018 30.5 9.3 99 629-737 17-129 (156)
17 3cis_A Uncharacterized protein 50.1 2.4E+02 0.0082 29.3 16.4 189 629-842 21-240 (309)
18 3s3t_A Nucleotide-binding prot 42.8 86 0.0029 28.4 8.8 97 629-737 7-118 (146)
19 3dlo_A Universal stress protei 38.6 1.2E+02 0.0042 28.1 9.2 98 629-737 26-127 (155)
20 3mt0_A Uncharacterized protein 37.1 1.5E+02 0.0052 30.6 10.6 85 648-737 155-247 (290)
21 3hgm_A Universal stress protei 37.1 1.5E+02 0.0051 26.7 9.4 97 629-737 4-120 (147)
22 3twe_A Alpha4H; unknown functi 31.1 29 0.00099 21.6 2.0 17 826-842 9-25 (27)
23 1jmv_A USPA, universal stress 30.1 2.9E+02 0.01 24.5 11.0 122 629-770 4-138 (141)
24 1tq8_A Hypothetical protein RV 21.6 2.6E+02 0.0088 26.0 8.2 96 629-737 19-129 (163)
25 2z08_A Universal stress protei 20.5 4.2E+02 0.014 23.3 9.2 96 629-737 4-109 (137)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=8.9e-43 Score=408.12 Aligned_cols=413 Identities=15% Similarity=0.185 Sum_probs=321.9
Q ss_pred cccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhC
Q 002018 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (980)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lg 209 (980)
++++|.+..+++ .+.+++|+++|...+. +..+||. ++++|++++++.++++++++|++++ +|.+||.|.|++|.+|
T Consensus 7 ~r~l~~~~~~~l-~ig~~iG~Gif~~~~~-~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~-~p~~Gg~y~~~~~~~G 82 (445)
T 3l1l_A 7 AHKVGLIPVTLM-VSGAIMGSGVFLLPAN-LASTGGI-AIYGWLVTIIGALGLSMVYAKMSFL-DPSPGGSYAYARRCFG 82 (445)
T ss_dssp CCCBCHHHHHHH-HHHHHCSSHHHHHHHH-HHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHH-CCCTTTHHHHHHHHSC
T ss_pred CCcccHHHHHHH-HHHhHHhhhHHhhHHH-HHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCCchhhHHhHcC
Confidence 356666666644 3445789999988776 5568886 6789999999999999999999998 9999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 002018 210 PEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVF 289 (980)
Q Consensus 210 p~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~ 289 (980)
|.+|+.+||.+++++.+..+.+..++++++...+|... ..+...+++++++++++++|+
T Consensus 83 ~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~in~ 141 (445)
T 3l1l_A 83 PFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK---------------------DPWVLTITCVVVLWIFVLLNI 141 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG---------------------SHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc---------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988876665320 113345778888889999999
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHh-hheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHH
Q 002018 290 GGVKIINRVAPTFLIPVLLSIFCI-FVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALV 368 (980)
Q Consensus 290 ~Gvk~~~~~~~~~~~~~il~i~~i-iig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f 368 (980)
+|+|..++++.++..++++.++.+ +.++..... +++.+.+.+.+. ..+.+++.++
T Consensus 142 ~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~----------------~~~~~~~~~~~~--------~~~~~~~~~~ 197 (445)
T 3l1l_A 142 VGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG----------------ETYMAAWNVSGL--------GTFGAIQSTL 197 (445)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC----------------CCCCCC-------------------HHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh----------------hhcccccCccCC--------ccHHHHHHHH
Confidence 999999999999999988887744 444332111 112122221110 0134588889
Q ss_pred HHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhh--hhhh---HhhccCchHHH
Q 002018 369 GLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLT--DRLL---TATIAWPFPAV 443 (980)
Q Consensus 369 ~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~--~~~~---~~~~~~~~~~i 443 (980)
...+|+|+|+|.++++++|+|||+|++|||++.++.+++++|++..+.+....|.+++.. +++. ....+.....+
T Consensus 198 ~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~ 277 (445)
T 3l1l_A 198 NVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAI 277 (445)
T ss_dssp HHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999999999999998777777777665432 2332 22344556789
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhcc-------ccccchhhh
Q 002018 444 IHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVII-------GNLDLITPT 516 (980)
Q Consensus 444 i~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~-------~~~~~l~~i 516 (980)
+.++++++++++.++.+++++|++++|||||.+|++ +.+++|+++|++|++++++++.++.++ ..++.+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~-~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (445)
T 3l1l_A 278 VSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPI-FARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSV 356 (445)
T ss_dssp HHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGG-GGCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHH-HHhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 999999999999999999999999999999999986 777788999999999999877655443 347889999
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhheeeeeCC
Q 002018 517 ITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISWS---FTVVSLALASLIYYYVCLKGK 593 (980)
Q Consensus 517 ~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~~---~~~~~l~i~~~l~~~~~~~~~ 593 (980)
.++..+++|.+++++++++|++ .| +++++ ..++++++|.+.|+++++..++. ...+++++++++|++.+++++
T Consensus 357 ~~~~~~~~y~~~~~~~~~~r~~-~~--~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 357 SVIFTLVPYLYTCAALLLLGHG-HF--GKARP-AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSS-SS--GGGCT-TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-Cc--ccccc-hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999984 44 33332 34578889999999888776544 345567777777777665554
Q ss_pred CCC
Q 002018 594 AGD 596 (980)
Q Consensus 594 ~~~ 596 (980)
++.
T Consensus 433 ~~~ 435 (445)
T 3l1l_A 433 KNP 435 (445)
T ss_dssp CCS
T ss_pred cCc
Confidence 443
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.7e-42 Score=413.05 Aligned_cols=392 Identities=16% Similarity=0.226 Sum_probs=280.4
Q ss_pred CCcccCCCCCCCcccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHH-HHHHHHHHHHHHc--CCc
Q 002018 118 DAPITYGPPKPSDVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSC-TFLTSISLSAIAT--NGA 194 (980)
Q Consensus 118 ~l~~~l~~~~~~~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i-~~~~~ls~aElat--~~~ 194 (980)
+++|+++..+.....+|.++|.+ +. + ..+.+||...+ .+++++++ .++++++++|+++ + +
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig~~--------~~------~-~~~~~G~~~~~-~~~i~~~~~~l~~al~~ael~s~~~-~ 70 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMAVY--------EY------P-TFATSGFSLVF-FLLLGGILWFIPVGLCAAEMATVDG-W 70 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCCGG--------GH------H-HHHTTTTHHHH-HHHHHHHHTHHHHHHHHHHHHTTSC-C
T ss_pred ccCccccHHHHHHHHHHHHHhhc--------hh------H-HHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHccccc-C
Confidence 45566665555555555544421 11 1 13557876544 44444444 4569999999999 9 9
Q ss_pred cccCchhhhHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCCcchhhhhccCCCCCCCCCCCCCCch
Q 002018 195 MKGGGPYYLIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKAV--PAAGMFRETITKVNGTATPEPIQSPSLHD 272 (980)
Q Consensus 195 p~~GG~y~~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~--p~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 272 (980)
| +||.|+|++|.+||.+||.+||.+|+++++..+.+..++++++...+ |.. .+..+.
T Consensus 71 P-~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--------------------~~~~~~ 129 (511)
T 4djk_A 71 E-EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPAL--------------------NEDPIT 129 (511)
T ss_dssp ----CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGG--------------------TSCSSH
T ss_pred C-CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc--------------------ccCcHH
Confidence 9 99999999999999999999999999999999998888888876552 221 122344
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHH-HH-HhhheeeecCCCCCCCCcccccccccccccCcccccCCC
Q 002018 273 LQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLS-IF-CIFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNN 350 (980)
Q Consensus 273 ~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~-i~-~iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~ 350 (980)
..+++++++++++++|++|+|..++++.++..++++. ++ ++++|++....+++. ++.. ..+++.+++..
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~--- 200 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPV----AIEM--DSKTFFPDFSK--- 200 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------------CCCCCTTS---
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----cccC--cccccCCCccc---
Confidence 5678888999999999999999999999987764433 33 444454433222211 0000 01122222211
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh-
Q 002018 351 AGIPDPNGAVDWSFNALVGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD- 429 (980)
Q Consensus 351 ~g~~~~~g~~~~~f~~~f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~- 429 (980)
.+++.++...+|+|+|+|++++++||+|||+|++|||++.++++++++|++..+.+..+.|.++...+
T Consensus 201 -----------~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 269 (511)
T 4djk_A 201 -----------VGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSA 269 (511)
T ss_dssp -----------TTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSS
T ss_pred -----------chHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccc
Confidence 12334567789999999999999999999999999999999999999999988888877777664322
Q ss_pred h----hhH--hhcc---CchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHH
Q 002018 430 R----LLT--ATIA---WPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFI 500 (980)
Q Consensus 430 ~----~~~--~~~~---~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i 500 (980)
+ +.. ...+ .+...++++++++++++++++.++++||++++|||||.+|++ +.+++|+++|++|++++.++
T Consensus 270 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~-~~~~~~~~~P~~ai~~~~~~ 348 (511)
T 4djk_A 270 GVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAA-FAKMNKNGVPVTLVISQLVI 348 (511)
T ss_dssp THHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCSSS-CCCCCSSSCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccHH-HHhcCCCCCcHHHHHHHHHH
Confidence 1 111 1222 345789999999999999999999999999999999999986 77788899999999998554
Q ss_pred Hh-hhhcccc--------ccchhhhhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCccch-----hhHHHHHHHHHHHHH
Q 002018 501 CI-GCVIIGN--------LDLITPTITMFFLLCYSGVNLSCFLLDLLDAPSWRPRWKFHH-----WSLSLLGSVFCIVIM 566 (980)
Q Consensus 501 ~~-l~~l~~~--------~~~l~~i~s~~~ll~y~~i~la~~~~r~~~~p~~r~~f~~~~-----~~~~l~g~i~~~~~~ 566 (980)
.. +++.+++ ++.+.++.+++++++|++++++++++|++ .|+.+++||.+. +.+++++++.|++.+
T Consensus 349 ~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (511)
T 4djk_A 349 TSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLK-HPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAF 427 (511)
T ss_dssp HHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCeecCCCchHHHHHHHHHHHHHHHHH
Confidence 33 3333443 68899999999999999999999999984 455567788762 346778888888877
Q ss_pred HHH
Q 002018 567 FLI 569 (980)
Q Consensus 567 ~~~ 569 (980)
+..
T Consensus 428 ~~~ 430 (511)
T 4djk_A 428 IVS 430 (511)
T ss_dssp HHT
T ss_pred Hee
Confidence 664
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=7.3e-42 Score=400.32 Aligned_cols=380 Identities=16% Similarity=0.236 Sum_probs=307.6
Q ss_pred cccccceeeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHhC
Q 002018 130 DVKLGTLMGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYYLIGRALG 209 (980)
Q Consensus 130 ~~~lG~~~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~~~sr~lg 209 (980)
++++|.+..+.+ .+.+++|+++|...|.+++.+|| ..+++|++++++.++++++++|++++ +|.+||.|.|++|.+|
T Consensus 5 ~r~l~~~~~~~l-~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~-~P~~Gg~y~~~~~~~G 81 (444)
T 3gia_A 5 NKKLSLWEAVSM-AVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAK-IVSNAGPIAFIHKAIG 81 (444)
T ss_dssp CCCBCHHHHHHH-HHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTT-CCCTTTHHHHHHHHHC
T ss_pred CCcCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCcHHHhHHHHhC
Confidence 345666555543 23346799999999999999999 67789999999999999999999998 9999999999999999
Q ss_pred chh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 002018 210 PEV-GVSIGLCFFLGNAVAGAMYVLGAVETFLKAVPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIV 288 (980)
Q Consensus 210 p~~-Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in 288 (980)
|.+ ++.+||.+|+++.+..+.++.++++++...++.. +..+...+++++++++++++|
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~in 140 (444)
T 3gia_A 82 DNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAP---------------------INTFNIAITEIGIVAFFTALN 140 (444)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC---------------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---------------------CchHHHHHHHHHHHHHHHHHH
Confidence 974 6677999999999999999999999998876532 112333467888889999999
Q ss_pred HhhhhHHHHHhhHHHHHHHHHHHHh-hheeeecCCCCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHH
Q 002018 289 FGGVKIINRVAPTFLIPVLLSIFCI-FVGILLASKDDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNAL 367 (980)
Q Consensus 289 ~~Gvk~~~~~~~~~~~~~il~i~~i-iig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~ 367 (980)
++|+|..++++.++..++++.++.+ +.++.... .+|+.+.+.+. .+.+++.+
T Consensus 141 ~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~----------------~~~~~~~~~~~-----------g~~~~~~~ 193 (444)
T 3gia_A 141 FFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIH----------------PSYVIPDLAPS-----------AVSGMIFA 193 (444)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----------------GGGTSCCCSHH-----------HHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------------hhhcCCCCCCc-----------chHHHHHH
Confidence 9999999999999999998888744 44543221 12333322211 13468888
Q ss_pred HHHHHHhhHHHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHhhccchhhhhhh---hhhH---hhccCchH
Q 002018 368 VGLFFPAVTGIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVISVLLFGAAATREELLTD---RLLT---ATIAWPFP 441 (980)
Q Consensus 368 f~~~~~a~tG~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~~~~~g~~~~~~~~~~~---~~~~---~~~~~~~~ 441 (980)
+...+|+|+|+|++++++||+|||+|++|||++.++++++++|++..+.+....|++++..+ ++.. ...+....
T Consensus 194 ~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~ 273 (444)
T 3gia_A 194 SAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGF 273 (444)
T ss_dssp HHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHH
Confidence 88999999999999999999999999999999999999999999988777777777765432 2221 12233345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCccceeecCCCCCchhhHHHHHHHHhhhhccccccchhhhhHHHH
Q 002018 442 AVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPVLNYFKVAEGREPHIATFFTAFICIGCVIIGNLDLITPTITMFF 521 (980)
Q Consensus 442 ~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~~~~~~~~~~g~P~~Aill~~~i~~l~~l~~~~~~l~~i~s~~~ 521 (980)
.++++++++++++++|+.++++||++++|||||.+|++ +.+++ +++|.+|+++++++++++.++.+++.+.++.++++
T Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~-f~~~~-~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (444)
T 3gia_A 274 LLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEF-FERKV-WFKSTEGLYITSALGVLFALLFNMEGVASITSAVF 351 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSS-CCTTS-CCSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH-HhCCC-CCCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999986 55655 45699999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCccchhhHHHHHHHHHHHHHHHHHH
Q 002018 522 LLCYSGVNLSCFLLDLLDAPSWRPRWKFHHWSLSLLGSVFCIVIMFLISW 571 (980)
Q Consensus 522 ll~y~~i~la~~~~r~~~~p~~r~~f~~~~~~~~l~g~i~~~~~~~~~~~ 571 (980)
+++|.+++++++++|+++ |+ .++.+++|++.|+++++...+
T Consensus 352 ~~~~~~~~~~~~~~r~~~-~~--------~~~~~~~~~~~~~~~~~~~~~ 392 (444)
T 3gia_A 352 MVIYLFVILSHYILIDEV-GG--------RKEIVIFSFIVVLGVFLLLLY 392 (444)
T ss_dssp HHHHHHHHHHHHHTHHHH-CC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcC-CC--------cchHHHHHHHHHHHHHHHHHH
Confidence 999999999999998853 32 136788888888887766543
No 4
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=100.00 E-value=1.4e-35 Score=310.76 Aligned_cols=257 Identities=14% Similarity=0.166 Sum_probs=199.1
Q ss_pred CCCCcccCCceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhccc
Q 002018 620 QVHPKNWYPIPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCE 699 (980)
Q Consensus 620 ~~h~k~~rP~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 699 (980)
.+++|||||++||+++.+ ..+..|++|++.|+ +++|++.+++|+..+-.+.. .++ .+.+.++++++++.
T Consensus 13 ~~~~knWrP~iLV~sg~p-------~~~~~li~la~~lt-~~~G~ltv~~i~p~~~~~~l--~~q-l~~l~~~l~~r~v~ 81 (294)
T 3g40_A 13 SSSERTWKANLLVPVEDP-------RELMGTFDFLRDIT-YPKGSVKLLGLAGNTDKENL--LSQ-LPSISEGFQEEGVF 81 (294)
T ss_dssp ------CCCEEEEEESCH-------HHHHHHHHHHHHHH-TTTCEEEEEECC---CTTCH--HHH-HHHHHHHHHHTTCE
T ss_pred CCCccCCCCcEEEecCCc-------hhhhhHHHHHHHhc-cCceeEEEEEEccCCCccHH--HHH-HHHHHHHHHhCCce
Confidence 468899999999999753 25779999999999 67999999999755422210 222 37789999999999
Q ss_pred ceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHHHHHHHhhcceEEEEecCCCCccccc
Q 002018 700 GVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQ 779 (980)
Q Consensus 700 ~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~i~~~~~~~~~v~i~r~~~~~p~~~~ 779 (980)
+|++++.|+++.+|+..++|+.|+|+++||||+||||+.+.+ .++|+++|+.+..+++||+++|.- |+...
T Consensus 82 a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~------~~~y~~~i~~~~~~~~nVlil~~~---~~~~f 152 (294)
T 3g40_A 82 SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDR------DEEIREIIRKASMYRMGVLLFSKH---PQAGL 152 (294)
T ss_dssp EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGG------HHHHHHHHHHHHHTTCEEEEEECC---TTTTT
T ss_pred eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhh------hHHHHHHHHHHHHhCceEEEEecC---CccCC
Confidence 999999999999999999999999999999999999976432 368999999999999999999842 33333
Q ss_pred ccCCcceeE-------EE----eeCChHHHHHHHHhccCcccCCceEEEEEEecCCchHHHHHHHHHHHHHHcccCcEEE
Q 002018 780 RQYGTIDLY-------WI----VRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVI 848 (980)
Q Consensus 780 ~~~g~IDvw-------W~----~~dGgL~lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~RI~a~v~ 848 (980)
.++++|||| |. ..||+||+++||+|+++ | +++||+.+|++++++.++.++.|++|++++||.|+..
T Consensus 153 g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~n--W-~A~I~L~~vV~de~a~~~a~~~l~~Lv~~~Ri~a~~~ 229 (294)
T 3g40_A 153 GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSN--W-KASLSFMTFAPTAIQAQAAENFLQSLAELARIPNVKM 229 (294)
T ss_dssp TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHH--H-TCEEEEEEECSSHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhC--c-CCeEEEEEecCCHHHHHHHHHHHHHHHHHhcCCceEE
Confidence 456889999 72 57999999999999885 8 9999999999999999999999999999999999987
Q ss_pred EEecCCccccccCCCCChhhHHHHHHHHHhHhhhhhHhhHhhhhcCCCCccCCCccccCHHHHHHHHHHHHHHHHHHHhc
Q 002018 849 VISMKSWDEQTENGPQQDESLDAFIAAQHRIKNYLAEMKAEAQKSGTPLMADGKPVVVNEQQVEKFLYTTLKLNSTILRH 928 (980)
Q Consensus 849 vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lneli~~~ 928 (980)
+|. .+++ ++|++
T Consensus 230 vv~-~~F~------------------------------------------------------------------~il~~- 241 (294)
T 3g40_A 230 QVL-RENP------------------------------------------------------------------IKSSK- 241 (294)
T ss_dssp EEE-SSCT------------------------------------------------------------------TTSSS-
T ss_pred Eec-CchH------------------------------------------------------------------HHHhh-
Confidence 764 3211 12233
Q ss_pred CCCccEEEEecCCCCCCCChhcHHHHHHHhhcCCC-ceEEEccCCce
Q 002018 929 SRMAAVVLVSLPPPPINHPAYCYMEYMDLLVENVP-RLLIVRGYRRD 974 (980)
Q Consensus 929 S~~a~lv~~~LP~p~~~~~~~~Ym~~l~~lt~~l~-p~llVrG~~~~ 974 (980)
|++|+|+|+.||.-|+ .++++.|++... -.||||++|+|
T Consensus 242 s~~ADL~flGl~~~~d-------f~~~~~~~~~~~ssc~f~~dsg~e 281 (294)
T 3g40_A 242 LPFASLHIFSLDPNPD-------LDLARHLMEKAGSSCIFALDSGEE 281 (294)
T ss_dssp CCCCSEEEEECCSSCC-------HHHHHHHHHHHTSEEEEEECCSCC
T ss_pred CcCCCEEEEcCCCCCc-------HHHHHHHHHhcCCeEEEEecCchh
Confidence 5789999999965553 456666666664 77899999987
No 5
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.26 E-value=0.00032 Score=82.31 Aligned_cols=255 Identities=10% Similarity=0.019 Sum_probs=124.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCchhh-hHHHHhCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002018 164 GIGDSLLVVAFCGSCTFLTSISLSAIATNGAMKGGGPYY-LIGRALGPEVGVSIGLCFFLGNAVAGAMYVLGAVETFLKA 242 (980)
Q Consensus 164 G~~~~li~~li~~~i~~~~~ls~aElat~~~p~~GG~y~-~~sr~lgp~~Gf~~Gw~~~l~~~~~~a~~~~~~~~~l~~~ 242 (980)
+....+++.+++.++..+.+.-.+.++. +.|-.|. +.+..+|..-+....++..+..+...+..+...++.+...
T Consensus 57 s~~~a~lai~lG~li~~~~~~l~~~~G~----~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~ 132 (501)
T 2jln_A 57 QVWQVIVAIAAGCTIAVILLFFTQSAAI----RWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEI 132 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTHHHH----HHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHh----hcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666655544444444444 3454455 5556889888877777665555555555555555554443
Q ss_pred ccCCCcchhhhhccCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhheeeecCC
Q 002018 243 VPAAGMFRETITKVNGTATPEPIQSPSLHDLQIYGIIVTIILCFIVFGGVKIINRVAPTFLIPVLLSIFCIFVGILLASK 322 (980)
Q Consensus 243 ~p~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~i~~~i~l~~~~~in~~Gvk~~~~~~~~~~~~~il~i~~iiig~~~~~~ 322 (980)
+... + | .....+..+++.++.+++.++|.|...+++.+...+.++.++.+.+..+...
T Consensus 133 ~~~~--~--------g-----------~~~~~v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~- 190 (501)
T 2jln_A 133 TRLL--T--------G-----------FTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGA- 190 (501)
T ss_dssp HHHH--H--------C-----------CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHh--c--------C-----------cchHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 2110 0 0 0011233444566677778999999999988876655554442222111100
Q ss_pred CCCCCCcccccccccccccCcccccCCCCCCCCCCCCchhHHHHHHHH-HHHhhHHHHHHhhhcccccccccc-------
Q 002018 323 DDPAPGITGLKLKTFKDNWFSDYQKTNNAGIPDPNGAVDWSFNALVGL-FFPAVTGIMAGSNRSASLKDTQRS------- 394 (980)
Q Consensus 323 ~~~~~~~~g~~~~~~~~n~~~~f~~~~~~g~~~~~g~~~~~f~~~f~~-~~~a~tG~ea~a~~a~E~knP~ks------- 394 (980)
|++. .+... ..+ ....++|+.++.. +.+..++.-..+..+...|+++..
T Consensus 191 --------g~~~----~~~~~-~~~----------~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~ 247 (501)
T 2jln_A 191 --------DVSL----GEVMS-MGG----------ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTK 247 (501)
T ss_dssp --------TCCH----HHHTT-CCC----------SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHH
T ss_pred --------CCcc----hhhhc-cCC----------ccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhh
Confidence 0000 00000 000 0011235554443 222334445566778888877651
Q ss_pred ----hhHHHHHHHHHHHHH-HHHHHHHHhhccchhhhhhhhhhHhhc-cCch-HHHHH-HHHHHHHHHHHH-HHhhhhHH
Q 002018 395 ----IPIGTLAATLTTTAL-YVISVLLFGAAATREELLTDRLLTATI-AWPF-PAVIH-IGIILSTLGAAL-QSLTGAPR 465 (980)
Q Consensus 395 ----IP~a~~~si~~~~v~-Yil~~~~~g~~~~~~~~~~~~~~~~~~-~~~~-~~ii~-~~il~s~lss~~-s~l~~asR 465 (980)
+-.+...+..+..++ +++.+++ +......++. ..+.... +... ..+.. +.++++.++... +.+|+++-
T Consensus 248 ~~~~~~~g~~lG~~i~~~~~~~lG~~~-~~~~~~~dp~--~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~ 324 (501)
T 2jln_A 248 ADARYATAQWLGMVPASIIFGFIGAAS-MVLVGEWNPV--IAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAY 324 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCSCHH--HHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH-HHhccccCHH--HHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 223333333333322 2222221 1111111111 1122211 2322 46666 777788877776 48999998
Q ss_pred HHHHH
Q 002018 466 LLAAI 470 (980)
Q Consensus 466 ~L~al 470 (980)
-++.+
T Consensus 325 ~l~~~ 329 (501)
T 2jln_A 325 TLCST 329 (501)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88887
No 6
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.48 E-value=5 Score=46.56 Aligned_cols=313 Identities=18% Similarity=0.170 Sum_probs=146.0
Q ss_pred eeeecccchhhhhhHhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcCCc-----cccCchhhhHHHHhCch
Q 002018 137 MGVFIPCLQNILGIIYYIRFTWIVGMGGIGDSLLVVAFCGSCTFLTSISLSAIATNGA-----MKGGGPYYLIGRALGPE 211 (980)
Q Consensus 137 ~Gv~i~~~~~i~G~~lFl~~g~~lg~aG~~~~li~~li~~~i~~~~~ls~aElat~~~-----p~~GG~y~~~sr~lgp~ 211 (980)
.|..+.|+.+.+|.+=.-|+++..++-|-+.-++.|+++.++. ..-+-+.|++- |. -+.|..-.| +.+.|.
T Consensus 12 ~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~-GiPll~~E~al-Gq~~~~~~r~~~i~a~--~~l~~~ 87 (519)
T 2a65_A 12 LGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLV-GIPLMWIEWAM-GRYGGAQGHGTTPAIF--YLLWRN 87 (519)
T ss_dssp HHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHT-HHHHHHHHHHH-HHHHHTTTCCSHHHHH--HHHSCS
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HHHHHHHHHHh-cccchhccCCCHHHHH--HHhcCC
Confidence 3444445555668887889999998777555566666654443 23344666665 22 233333333 223332
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcc---CC------------CcchhhhhccCCCCCCCCCCCC
Q 002018 212 -VGVSIGLCFFLGNAVAGAMYVLGA-------VETFLKAVP---AA------------GMFRETITKVNGTATPEPIQSP 268 (980)
Q Consensus 212 -~Gf~~Gw~~~l~~~~~~a~~~~~~-------~~~l~~~~p---~~------------~~~~~~~~~~~g~~~~~~l~~~ 268 (980)
..-.+||.-.+...+....|.+-. ...+...+| .. ..+.+.+....+ .... ..
T Consensus 88 ~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~~~~~~~~~~~~~f~~~l~~~~~---~~~~-g~ 163 (519)
T 2a65_A 88 RFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKG---DEPI-LK 163 (519)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--CCHHHHHHHHHHHHHHHHTCCSS---SSCB-CC
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcccccCcHHHHHHHHHCCCCC---cccc-cC
Confidence 223355554444433333333322 222222233 00 011111111100 0000 01
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhh-hHHHHHhhHHHHHHHHHHHH-hhheeeecCCCCCCCCcccccccccccccCcccc
Q 002018 269 SLHDLQIYGIIVTIILCFIVFGGV-KIINRVAPTFLIPVLLSIFC-IFVGILLASKDDPAPGITGLKLKTFKDNWFSDYQ 346 (980)
Q Consensus 269 ~~~~~~i~~~i~l~~~~~in~~Gv-k~~~~~~~~~~~~~il~i~~-iiig~~~~~~~~~~~~~~g~~~~~~~~n~~~~f~ 346 (980)
..+...+.-+++.++..++...|+ |..+|+..++.-...+.++. ++-++... ++. .....|. .-.+.|++.
T Consensus 164 ~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLp-Gp~-~~A~~Gl-----~~~~~Pd~s 236 (519)
T 2a65_A 164 PSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLE-TPN-GTAADGL-----NFLWTPDFE 236 (519)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCE-ETT-EEHHHHH-----HHHHSCCTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-CCc-hhHHHHH-----HHHhcCCHH
Confidence 112333344555566667778899 78888887765544444332 22232211 100 0011121 112345443
Q ss_pred cCCCCCCCCCCCCchhHHHHHHHHHHHhhH-HHHHHhhhcccccccccchhHHHHHHHHHHHHHHHHH---HHH-Hhhc-
Q 002018 347 KTNNAGIPDPNGAVDWSFNALVGLFFPAVT-GIMAGSNRSASLKDTQRSIPIGTLAATLTTTALYVIS---VLL-FGAA- 420 (980)
Q Consensus 347 ~~~~~g~~~~~g~~~~~f~~~f~~~~~a~t-G~ea~a~~a~E~knP~ksIP~a~~~si~~~~v~Yil~---~~~-~g~~- 420 (980)
.-. ....+..+++.+||+++ |+-.....+.=.| .+.|++|-.......-+.+-++. ++. .+..
T Consensus 237 ~L~----------~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~-~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a 305 (519)
T 2a65_A 237 KLK----------DPGVWIAAVGQIFFTLSLGFGAIITYASYVR-KDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAF 305 (519)
T ss_dssp STT----------CHHHHHHHHHHHHHHHTTTSSHHHHHHTTSC-TTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HhC----------CHHHHHHHHHHHHHHhHHHHhHHhhhhcccC-CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 321 12357888999999773 4433333333332 45678887776666655555431 110 1111
Q ss_pred --cc-hhhh-hhh-hh------hHhhccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCC
Q 002018 421 --AT-REEL-LTD-RL------LTATIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDI 475 (980)
Q Consensus 421 --~~-~~~~-~~~-~~------~~~~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~ 475 (980)
.+ .++. .+. +- ..+....|.+.+..+.-++..+.+++++..+.--..-+.-.|..
T Consensus 306 ~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~ 371 (519)
T 2a65_A 306 FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL 371 (519)
T ss_dssp HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 11 1111 111 11 11122234556666666677777777777776666666666664
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=94.95 E-value=3.6 Score=48.06 Aligned_cols=41 Identities=7% Similarity=0.068 Sum_probs=29.8
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCCCCc
Q 002018 435 TIAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDILPV 478 (980)
Q Consensus 435 ~~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~lP~ 478 (980)
..+.+..-++.++++.+.+|++.+.+.+.+-+ +++|=+-|.
T Consensus 316 ~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~---~~~Diy~~~ 356 (530)
T 3dh4_A 316 FLPVGVKGVVFAALAAAIVSSLASMLNSTATI---FTMDIYKEY 356 (530)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTCCCC
T ss_pred HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHhHHHHHh
Confidence 44445667888889999999999888888764 456655553
No 8
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=91.47 E-value=27 Score=41.21 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=25.7
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCC
Q 002018 436 IAWPFPAVIHIGIILSTLGAALQSLTGAPRLLAAIANDDI 475 (980)
Q Consensus 436 ~~~~~~~ii~~~il~s~lss~~s~l~~asR~L~alArDg~ 475 (980)
.+.+..-++.++++.+.+|++.+.+.+.+-++ ++|=+
T Consensus 346 lp~~l~gl~~a~llaA~mST~~s~l~a~st~~---~~Diy 382 (593)
T 2xq2_A 346 LPVGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 382 (593)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 34445667788888888888888888777543 45543
No 9
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=81.21 E-value=33 Score=35.96 Aligned_cols=195 Identities=9% Similarity=0.022 Sum_probs=97.9
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCc---------cc-hHH----HHHHHHHHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH---------EC-AED----AKTACKQLATYID 694 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~---------~~-~~~----~~~~~~~~~~~~~ 694 (980)
.+||.++.. +....++++|..+.+....-+.++||+..+.. +. .++ .++..+++.+.++
T Consensus 24 ~ILv~vD~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 96 (294)
T 3loq_A 24 AMLLPTDLS-------ENSFKVLEYLGDFKKVGVEEIGVLFVINLTKLSTVSGGIDIDHYIDEMSEKAEEVLPEVAQKIE 96 (294)
T ss_dssp EEEEECCSC-------TGGGGGGGGHHHHHHTTCCEEEEECCEECTTC-----CCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCC-------HHHHHHHHHHHHHHhhcCCEEEEEEEecCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578877542 23446789999998776667778888754321 00 011 1122223333444
Q ss_pred hhcccceEEEEe-cCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHH-HHHHH-HhhcceEEEEecC
Q 002018 695 YKRCEGVAEIVV-APNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVG-IINDC-IVANKAVVIVKGL 771 (980)
Q Consensus 695 ~~~~~~f~~~~~-a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~-~i~~~-~~~~~~v~i~r~~ 771 (980)
..+++.-...+. ..+..+.+ ..+. .+.+.|+||...... ..+.+.+ +.+.+ ....+.|++++.-
T Consensus 97 ~~g~~~~~~~v~~~g~~~~~I--~a~~-----~~~DliV~G~~g~~~------~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 163 (294)
T 3loq_A 97 AAGIKAEVIKPFPAGDPVVEI--IKAS-----ENYSFIAMGSRGASK------FKKILLGSVSEGVLHDSKVPVYIFKHD 163 (294)
T ss_dssp HTTCEEEECSSCCEECHHHHH--HHHH-----TTSSEEEEECCCCCH------HHHHHHCCHHHHHHHHCSSCEEEECCC
T ss_pred HcCCCcceeEeeccCChhHhe--eecc-----CCCCEEEEcCCCCcc------ccceeeccHHHHHHhcCCCCEEEecCc
Confidence 333322110123 55777777 4343 358999999864311 0011111 12222 2367889998753
Q ss_pred CCCcccccccCCcceeEEEeeCChHHHHHHHHhccCcccCCceEEEEEEecCCchHHHHHHHHHHHHHHcccCcEEEEE
Q 002018 772 DEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLRMQAEVIVI 850 (980)
Q Consensus 772 ~~~p~~~~~~~g~IDvwW~~~dGgL~lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~RI~a~v~vv 850 (980)
..+ ....++|=+=|...+... -.+.+.+..-+. .+++|+++.+.+... .++..+++.+.|.+.-++.+..+.
T Consensus 164 ~~~----~~~~~~Ilv~~d~s~~s~-~al~~a~~la~~-~~~~l~ll~v~~~~~-~~~~l~~~~~~l~~~~~~~~~~~~ 235 (294)
T 3loq_A 164 MVV----NSLFDRVLVAYDFSKWAD-RALEYAKFVVKK-TGGELHIIHVSEDGD-KTADLRVMEEVIGAEGIEVHVHIE 235 (294)
T ss_dssp TTT----TCTTSEEEEECCSSHHHH-HHHHHHHHHHHH-HTCEEEEEEECSSSC-CHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ccc----CccCCEEEEEECCCHHHH-HHHHHHHHHhhh-cCCEEEEEEEccCch-HHHHHHHHHHHHHHcCCcEEEEEe
Confidence 211 122344444442211111 112222222111 268999999887654 344455666667766666665544
No 10
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=79.83 E-value=62 Score=33.74 Aligned_cols=191 Identities=9% Similarity=0.015 Sum_probs=101.5
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCccchHHHHHHHHHHHHHHHhhcccceEEEEecC
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECAEDAKTACKQLATYIDYKRCEGVAEIVVAP 708 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~a~ 708 (980)
.+||.++.. +.....+++|..+.+....-+.++|+... .+ .++..++..+.++..+++.-..+....
T Consensus 9 ~ILv~~D~s-------~~s~~al~~A~~la~~~~a~l~ll~v~~~--~~----~~~~l~~~~~~~~~~~~~~~~~~~~~g 75 (290)
T 3mt0_A 9 SILVVIEPD-------QLEGLALKRAQLIAGVTQSHLHLLVCEKR--RD----HSAALNDLAQELREEGYSVSTNQAWKD 75 (290)
T ss_dssp EEEEECCSS-------CSCCHHHHHHHHHHHHHCCEEEEEEECSS--SC----CHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred eEEEEeCCC-------ccchHHHHHHHHHHHhcCCeEEEEEeeCc--HH----HHHHHHHHHHHHhhCCCeEEEEEEeCC
Confidence 577777542 22346778998888765556777888752 11 122223334444555555434444456
Q ss_pred ChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHHHHHHHhhcceEEEEecCCCCcccccccCCcceeE
Q 002018 709 NMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQRQYGTIDLY 788 (980)
Q Consensus 709 ~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~i~~~~~~~~~v~i~r~~~~~p~~~~~~~g~IDvw 788 (980)
+..+.+....+..+ .+.|+||....-.-... ..-..--.++ ....+-|++++.-..+ ..++|=|=
T Consensus 76 ~~~~~i~~~a~~~~-----~dliV~G~~~~~~~~~~-~~gs~~~~vl---~~~~~PVlvv~~~~~~------~~~~Ilva 140 (290)
T 3mt0_A 76 SLHQTIIAEQQAEG-----CGLIIKQHFPDNPLKKA-ILTPDDWKLL---RFAPCPVLMTKTARPW------TGGKILAA 140 (290)
T ss_dssp SHHHHHHHHHHHHT-----CSEEEEECCCSCTTSTT-SCCHHHHHHH---HHCSSCEEEECCCSCS------TTCEEEEE
T ss_pred CHHHHHHHHHHhcC-----CCEEEEecccCCchhhc-ccCHHHHHHH---hcCCCCEEEecCCCCC------CCCeEEEE
Confidence 78887777766544 78999998753111100 0101111222 2368889998832211 23455555
Q ss_pred EEeeCC-------hH-HHHHHHHhccCcccCCceEEEEEEecCCc-------------hHHHHHHHHHHHHHHcccC-cE
Q 002018 789 WIVRDG-------GL-MLLLSQLLLTKESFESCKIQVFCIAEEDS-------------DAEVLKADVKKFLYDLRMQ-AE 846 (980)
Q Consensus 789 W~~~dG-------gL-~lll~~lL~~~~~W~~~klRvf~~~~~~~-------------~~~~~~~~l~~ll~~~RI~-a~ 846 (980)
|...+. .. .+-.+.-|.+. .+++|+++.+.+... ..++.++.++++++++-++ .+
T Consensus 141 ~D~s~~~~~~~~~s~~al~~a~~la~~---~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 217 (290)
T 3mt0_A 141 VDVGNNDGEHRSLHAGIISHAYDIAGL---AKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQ 217 (290)
T ss_dssp ECTTCCSHHHHHHHHHHHHHHHHHHHH---TTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTTT
T ss_pred ECCCCcchhhhHHHHHHHHHHHHHHHH---cCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence 543332 11 22233322222 269999998876421 1334566777788777664 34
Q ss_pred EEEE
Q 002018 847 VIVI 850 (980)
Q Consensus 847 v~vv 850 (980)
..+.
T Consensus 218 ~~v~ 221 (290)
T 3mt0_A 218 LHIE 221 (290)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4443
No 11
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=76.86 E-value=56 Score=33.49 Aligned_cols=193 Identities=11% Similarity=0.051 Sum_probs=92.0
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCc------------cc--------hHH-HHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH------------EC--------AED-AKTACK 687 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~------------~~--------~~~-~~~~~~ 687 (980)
.+||.++.. +.....+++|..+.+....-+.++||+..+.. +. .++ .++.++
T Consensus 2 ~ILv~vD~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
T 3ab8_A 2 RILLATDGS-------PQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEA 74 (268)
T ss_dssp CEEEECCSC-------GGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCC-------HHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366766531 23446778988887654455677888743210 00 000 111122
Q ss_pred ---HHHHHHHhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccc-cccccCCcchhHHHHHHHH-Hhhc
Q 002018 688 ---QLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIW-RRENLTEIPATFVGIINDC-IVAN 762 (980)
Q Consensus 688 ---~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w-~~~~~~~~~~~~v~~i~~~-~~~~ 762 (980)
+..+.++...++ +-..+...+..+.+... .-+.+.++||-.... .-... .. - .+.+.+ ...+
T Consensus 75 ~l~~~~~~~~~~g~~-~~~~~~~g~~~~~I~~~-------~~~~dliV~G~~g~~~~~~~~-~~-G---s~~~~v~~~a~ 141 (268)
T 3ab8_A 75 VLERVRQSALAAGVA-VEAVLEEGVPHEAILRR-------ARAADLLVLGRSGEAHGDGFG-GL-G---STADRVLRASP 141 (268)
T ss_dssp HHHHHHHHHHHTTCC-EEEEEEEECHHHHHHHH-------HTTCSEEEEESSCTTSCTTCC-SC-C---HHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCCC-eEEEEecCCHHHHHHhh-------ccCCCEEEEeccCCCcccccc-cc-c---hhHHHHHHhCC
Confidence 223333334444 22223344565444443 557999999986421 11100 01 0 112222 2367
Q ss_pred ceEEEEecCCCCcccccccCCcceeEEEeeCChHHHHHHHHhccCcccCCceEEEEEEecCCchHHHHHHHHHHHHHHcc
Q 002018 763 KAVVIVKGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDSDAEVLKADVKKFLYDLR 842 (980)
Q Consensus 763 ~~v~i~r~~~~~p~~~~~~~g~IDvwW~~~dGgL~lll~~lL~~~~~W~~~klRvf~~~~~~~~~~~~~~~l~~ll~~~R 842 (980)
+.|++++.-.. ..++|=+=|...+... -.+.+....-+. .+++++++.+.+..++.++..+++.+.|.+.-
T Consensus 142 ~PVlvv~~~~~-------~~~~ilv~~d~s~~~~-~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~l~~~~~~l~~~~ 212 (268)
T 3ab8_A 142 VPVLLAPGEPV-------ELEGALLGYDASESAV-RALHALAPLARA-LGLGVRVVSVHEDPARAEAWALEAEAYLRDHG 212 (268)
T ss_dssp SCEEEECSSCC-------CCCEEEEECCSCHHHH-HHHHHHHHHHHH-HTCCEEEEEECSSHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCCC-------CCCEEEEEECCCHHHH-HHHHHHHHhhhc-CCCEEEEEEEcCcHHHHHHHHHHHHHHHHHcC
Confidence 89999874211 1234444442221121 123332222111 26889999888765444444455566666555
Q ss_pred cCcEEEEE
Q 002018 843 MQAEVIVI 850 (980)
Q Consensus 843 I~a~v~vv 850 (980)
++.+..+.
T Consensus 213 ~~~~~~~~ 220 (268)
T 3ab8_A 213 VEASALVL 220 (268)
T ss_dssp CCEEEEEE
T ss_pred CceEEEEe
Confidence 55555443
No 12
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=69.47 E-value=38 Score=30.64 Aligned_cols=94 Identities=14% Similarity=0.040 Sum_probs=53.8
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhh-hCCCeeEEEEEEecCCCccch--------------HHHHHHHHHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMK-KKGRGMSIFVSILDGDYHECA--------------EDAKTACKQLATYI 693 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~-k~g~g~~~~~~v~~~~~~~~~--------------~~~~~~~~~~~~~~ 693 (980)
.+||.++.. +.....+++|..+. +....-+.++||...+..... ++.++..+++.+.+
T Consensus 3 ~ILv~~D~s-------~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 75 (138)
T 3idf_A 3 KLLFAIDDT-------EACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFF 75 (138)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466766431 23457789999998 766677788899876432110 11122223344444
Q ss_pred HhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 694 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 694 ~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
+..+++.-..+ ...+..+.+....+ +.+.++||-..
T Consensus 76 ~~~g~~~~~~v-~~g~~~~~I~~~a~-------~~dliV~G~~~ 111 (138)
T 3idf_A 76 TEKGINPFVVI-KEGEPVEMVLEEAK-------DYNLLIIGSSE 111 (138)
T ss_dssp HTTTCCCEEEE-EESCHHHHHHHHHT-------TCSEEEEECCT
T ss_pred HHCCCCeEEEE-ecCChHHHHHHHHh-------cCCEEEEeCCC
Confidence 44445433333 34466655555444 79999999764
No 13
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=61.72 E-value=1.6e+02 Score=30.81 Aligned_cols=200 Identities=11% Similarity=0.013 Sum_probs=100.5
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCc--------cchHHH-----HHHHHHHHHHHH-
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYH--------ECAEDA-----KTACKQLATYID- 694 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~--------~~~~~~-----~~~~~~~~~~~~- 694 (980)
.|||.++.. +.....+++|-.+.+....-+.++|++..... ...++. ++.++.+++..+
T Consensus 9 ~ILv~~D~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (319)
T 3olq_A 9 NLLVVIDPN-------QDDQPALRRAVYIVQRNGGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARY 81 (319)
T ss_dssp EEEEECCTT-------CSCCHHHHHHHHHHHHHCCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC-------cccHHHHHHHHHHHHHcCCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777542 12335778888888665556777888753210 001111 112223333333
Q ss_pred --hhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHHHHHHHhhcceEEEEecCC
Q 002018 695 --YKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLD 772 (980)
Q Consensus 695 --~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~i~~~~~~~~~v~i~r~~~ 772 (980)
..+++.-..+....+..+.+....+..+ .+.|+||....-..... ..-..--.++ ...++-|++++.-.
T Consensus 82 ~~~~~v~~~~~~~~~g~~~~~i~~~a~~~~-----~DLiV~G~~g~~~~~~~-~~Gs~~~~vl---~~~~~PVlvv~~~~ 152 (319)
T 3olq_A 82 YLEAGIQIDIKVIWHNRPYEAIIEEVITDK-----HDLLIKMAHQHDKLGSL-IFTPLDWQLL---RKCPAPVWMVKDKE 152 (319)
T ss_dssp HHHTTCCEEEEEEECSCHHHHHHHHHHHHT-----CSEEEEEEBCC--CCSC-BCCHHHHHHH---HHCSSCEEEEESSC
T ss_pred HhhcCCeEEEEEEecCChHHHHHHHHHhcC-----CCEEEEecCcCchhhcc-cccccHHHHH---hcCCCCEEEecCcc
Confidence 3344433334336788887777766544 68999998753111100 0101111222 34688999998521
Q ss_pred CCcccccccCCcceeEEEeeCCh-----H-HHHHHHHhccCcccC-CceEEEEEEecCCc------------------hH
Q 002018 773 EWPNEYQRQYGTIDLYWIVRDGG-----L-MLLLSQLLLTKESFE-SCKIQVFCIAEEDS------------------DA 827 (980)
Q Consensus 773 ~~p~~~~~~~g~IDvwW~~~dGg-----L-~lll~~lL~~~~~W~-~~klRvf~~~~~~~------------------~~ 827 (980)
++ ..+.|=|=|...+.. + .-.+.+.+..-+.+. +++|+++.+.+... ..
T Consensus 153 -~~-----~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (319)
T 3olq_A 153 -WP-----EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALR 226 (319)
T ss_dssp -CC-----TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHH
T ss_pred -cc-----cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHH
Confidence 11 234455555333311 1 222333333333332 68999998875421 12
Q ss_pred HHHHHHHHHHHHHcccC-cEEEEE
Q 002018 828 EVLKADVKKFLYDLRMQ-AEVIVI 850 (980)
Q Consensus 828 ~~~~~~l~~ll~~~RI~-a~v~vv 850 (980)
++.++.++++++++.+. .+..+.
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~v~ 250 (319)
T 3olq_A 227 GQHLIAMKELRQKFSIPEEKTHVK 250 (319)
T ss_dssp HHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHHhCCCcccEEEe
Confidence 33466777777777664 234443
No 14
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=57.30 E-value=63 Score=29.58 Aligned_cols=97 Identities=8% Similarity=-0.007 Sum_probs=59.1
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCC--------------ccchHH-HHHHHHHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDY--------------HECAED-AKTACKQLATYI 693 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~--------------~~~~~~-~~~~~~~~~~~~ 693 (980)
.+||.++.. +...+.+++|..+.+....-+.++||..... .+..++ .++.++.++++.
T Consensus 8 ~ILv~vD~s-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (150)
T 3tnj_A 8 HILLAVDFS-------SEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIG 80 (150)
T ss_dssp EEEEECCCS-------TTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHH
Confidence 477777542 2345677898888875445677888875421 111122 234455667777
Q ss_pred HhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 694 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 694 ~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
++.+++.....+...+..+.+....+. .+.+.|+||-..
T Consensus 81 ~~~~~~~~~~~~~~g~~~~~I~~~a~~-----~~~dliV~G~~~ 119 (150)
T 3tnj_A 81 NTLGIDPAHRWLVWGEPREEIIRIAEQ-----ENVDLIVVGSHG 119 (150)
T ss_dssp HHHTCCGGGEEEEESCHHHHHHHHHHH-----TTCSEEEEEEC-
T ss_pred HHcCCCcceEEEecCCHHHHHHHHHHH-----cCCCEEEEecCC
Confidence 766666544455666887777776665 347899999754
No 15
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=54.10 E-value=99 Score=27.85 Aligned_cols=96 Identities=8% Similarity=0.014 Sum_probs=56.3
Q ss_pred ceEEeeCCCCCCCCCCCC--chhhhhhHHHhhhCCCeeEEEEEEecCCCc------------c-chHHHHHHHHHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPC--HPKLADFANCMKKKGRGMSIFVSILDGDYH------------E-CAEDAKTACKQLATYI 693 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~--~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~------------~-~~~~~~~~~~~~~~~~ 693 (980)
.+||.++.. +. ..+.+++|..+.+....-+.++||...... + ..+..++..+++++++
T Consensus 3 ~ILv~vD~s-------~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 75 (143)
T 3fdx_A 3 AILVPIDIS-------DKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIA 75 (143)
T ss_dssp EEEEECCTT-------CSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCC-------hHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHH
Confidence 467777542 12 335778888887654456778898865211 0 1112234455667777
Q ss_pred Hhhcccc--eEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCc
Q 002018 694 DYKRCEG--VAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYP 736 (980)
Q Consensus 694 ~~~~~~~--f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~ 736 (980)
++..+.+ +-..+...+..+.+....+. .+.+.++||-.
T Consensus 76 ~~~~~~~~~v~~~~~~g~~~~~I~~~a~~-----~~~dliV~G~~ 115 (143)
T 3fdx_A 76 KKFSIPEDRMHFHVAEGSPKDKILALAKS-----LPADLVIIASH 115 (143)
T ss_dssp TTSCCCGGGEEEEEEESCHHHHHHHHHHH-----TTCSEEEEESS
T ss_pred HHcCCCCCceEEEEEecChHHHHHHHHHH-----hCCCEEEEeCC
Confidence 7665544 22334445787777776665 34889999976
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=53.62 E-value=52 Score=30.51 Aligned_cols=99 Identities=9% Similarity=0.099 Sum_probs=55.4
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCcc----ch--------HHHHHHHHHHHHHHHhh
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE----CA--------EDAKTACKQLATYIDYK 696 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~----~~--------~~~~~~~~~~~~~~~~~ 696 (980)
.+||.++... .+...+.+++|..+.+....-+.++||+...... .. ++.++..+++.+.++..
T Consensus 17 ~ILv~vD~~~-----s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (156)
T 3fg9_A 17 RILLTVDEDD-----NTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQR 91 (156)
T ss_dssp -EEEECCSCC-----CHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCC-----CHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5777775100 1234467788888876545567888998653210 00 11122223344445555
Q ss_pred cccceEEEEec-CChHHHHHHH-HHHhCCCCCCCcEEEecCcc
Q 002018 697 RCEGVAEIVVA-PNMSEGFRGI-VQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 697 ~~~~f~~~~~a-~~~~~g~~~l-~q~~GlG~l~PNtv~lg~~~ 737 (980)
.++.+...+.. .+..+.+... .+.. +.+.|+||-..
T Consensus 92 g~~~~~~~v~~~g~~~~~I~~~~a~~~-----~~DlIV~G~~g 129 (156)
T 3fg9_A 92 GVNQVEPLVYEGGDVDDVILEQVIPEF-----KPDLLVTGADT 129 (156)
T ss_dssp TCSSEEEEEEECSCHHHHHHHTHHHHH-----CCSEEEEETTC
T ss_pred CCCceEEEEEeCCCHHHHHHHHHHHhc-----CCCEEEECCCC
Confidence 56433333444 6888777776 5553 37899999764
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=50.09 E-value=2.4e+02 Score=29.33 Aligned_cols=189 Identities=7% Similarity=-0.039 Sum_probs=88.6
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCcc------chH-------HHHHHHHHHHHHHHh
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHE------CAE-------DAKTACKQLATYIDY 695 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~------~~~-------~~~~~~~~~~~~~~~ 695 (980)
.|||.++.. +....++++|..+.+....-+.++||+..+... ..+ +.++..++..+.++.
T Consensus 21 ~ILv~~D~s-------~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 93 (309)
T 3cis_A 21 GIIVGIDDS-------PAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQ 93 (309)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCC-------HHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 477777531 234467788888876544556778887532110 101 111222233444443
Q ss_pred h-----cccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHH-HHHHHH-HhhcceEEEE
Q 002018 696 K-----RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFV-GIINDC-IVANKAVVIV 768 (980)
Q Consensus 696 ~-----~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v-~~i~~~-~~~~~~v~i~ 768 (980)
. .++.- ..+...+..+.+... +- +.+.|+||....-. ... .++ .+.+.+ ....+.|+++
T Consensus 94 ~~~~~~~~~~~-~~~~~g~~~~~I~~~---a~----~~DliV~G~~g~~~---~~~---~~~Gs~~~~vl~~~~~PVlvv 159 (309)
T 3cis_A 94 ASLRAGPPTVH-SEIVPAAAVPTLVDM---SK----DAVLMVVGCLGSGR---WPG---RLLGSVSSGLLRHAHCPVVII 159 (309)
T ss_dssp HCSSSCCSCEE-EEEESSCHHHHHHHH---GG----GEEEEEEESSCTTC---CTT---CCSCHHHHHHHHHCSSCEEEE
T ss_pred hcccCCCceEE-EEEecCCHHHHHHHH---hc----CCCEEEECCCCCcc---ccc---cccCcHHHHHHHhCCCCEEEE
Confidence 3 33322 223344665554444 32 69999999864311 111 011 111222 2368999999
Q ss_pred ecCCCCcccccccCCcceeEEEeeCChHHHHHHHHhccCcccCCceEEEEEEecCCc-----------hHHHHHHHHHHH
Q 002018 769 KGLDEWPNEYQRQYGTIDLYWIVRDGGLMLLLSQLLLTKESFESCKIQVFCIAEEDS-----------DAEVLKADVKKF 837 (980)
Q Consensus 769 r~~~~~p~~~~~~~g~IDvwW~~~dGgL~lll~~lL~~~~~W~~~klRvf~~~~~~~-----------~~~~~~~~l~~l 837 (980)
+.-...+ .....++|=|=|...+... -.+.+.+..-+. .+++|.++.+.+... ..++.++.++++
T Consensus 160 ~~~~~~~--~~~~~~~Ilv~~D~s~~s~-~al~~a~~la~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (309)
T 3cis_A 160 HDEDSVM--PHPQQAPVLVGVDGSSASE-LATAIAFDEASR-RNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAER 235 (309)
T ss_dssp CTTCCCS--CSSCCCCEEEECCSSHHHH-HHHHHHHHHHHH-TTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHH
T ss_pred cCCcccC--CCCCCCeEEEEeCCChHHH-HHHHHHHHHHHh-cCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHH
Confidence 8532100 0112244544442222121 122222222111 268999998875421 123445566666
Q ss_pred HHHcc
Q 002018 838 LYDLR 842 (980)
Q Consensus 838 l~~~R 842 (980)
+..++
T Consensus 236 ~~~~~ 240 (309)
T 3cis_A 236 LAGWQ 240 (309)
T ss_dssp HTTHH
T ss_pred HHHHH
Confidence 66553
No 18
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=42.82 E-value=86 Score=28.40 Aligned_cols=97 Identities=8% Similarity=-0.004 Sum_probs=51.4
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCccc------h----HH-HHHHHH---HHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHEC------A----ED-AKTACK---QLATYID 694 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~------~----~~-~~~~~~---~~~~~~~ 694 (980)
.+||.++.. +...+.+++|..+.+....-+.++||........ . ++ .++.++ ++.+.++
T Consensus 7 ~ILv~~D~s-------~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (146)
T 3s3t_A 7 NILVPVDSS-------DAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVA 79 (146)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCCC-------HHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777531 2344678888888865445677889986542111 0 11 111222 3333334
Q ss_pred hhcccceEEEEecCChHHHHHH-HHHHhCCCCCCCcEEEecCcc
Q 002018 695 YKRCEGVAEIVVAPNMSEGFRG-IVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 695 ~~~~~~f~~~~~a~~~~~g~~~-l~q~~GlG~l~PNtv~lg~~~ 737 (980)
..++..+-..+...+..+.+.. ..+. .+.+.++||-..
T Consensus 80 ~~g~~~~~~~~~~g~~~~~I~~~~a~~-----~~~dliV~G~~~ 118 (146)
T 3s3t_A 80 TTSAPNLKTEISYGIPKHTIEDYAKQH-----PEIDLIVLGATG 118 (146)
T ss_dssp TSSCCCCEEEEEEECHHHHHHHHHHHS-----TTCCEEEEESCC
T ss_pred hcCCcceEEEEecCChHHHHHHHHHhh-----cCCCEEEECCCC
Confidence 4444122223334466655555 4443 358999999754
No 19
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=38.65 E-value=1.2e+02 Score=28.09 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=55.9
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCCccch---HHHHHHHHHHHHHHHhhcccceEEE-
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDYHECA---EDAKTACKQLATYIDYKRCEGVAEI- 704 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~- 704 (980)
.|||.++.. .+...+++++|..+.+....-+.++||...+..... ++.++..++..+.++...++.=.+.
T Consensus 26 ~ILv~vD~~------s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ 99 (155)
T 3dlo_A 26 PIVVAVDKK------SDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTKDEDIIEAKETLSWAVSIIRKEGAEGEEHLL 99 (155)
T ss_dssp CEEEECCSS------SHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCC------CHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcccHHHHHHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 477777530 123456778888887654455788899865422111 1222333344455555444432233
Q ss_pred EecCChHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 705 VVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 705 ~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
+...+..+.+....+. .+...|+||-..
T Consensus 100 v~~G~~~~~I~~~a~~-----~~~DLIV~G~~g 127 (155)
T 3dlo_A 100 VRGKEPPDDIVDFADE-----VDAIAIVIGIRK 127 (155)
T ss_dssp ESSSCHHHHHHHHHHH-----TTCSEEEEECCE
T ss_pred ecCCCHHHHHHHHHHH-----cCCCEEEECCCC
Confidence 3345777777776664 348899999754
No 20
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=37.07 E-value=1.5e+02 Score=30.63 Aligned_cols=85 Identities=7% Similarity=-0.056 Sum_probs=53.1
Q ss_pred hhhhhhHHHhhhCCCeeEEEEEEecCCCcc-------chHH-HHHHHHHHHHHHHhhcccceEEEEecCChHHHHHHHHH
Q 002018 648 PKLADFANCMKKKGRGMSIFVSILDGDYHE-------CAED-AKTACKQLATYIDYKRCEGVAEIVVAPNMSEGFRGIVQ 719 (980)
Q Consensus 648 ~~L~~fa~~l~k~g~g~~~~~~v~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~f~~~~~a~~~~~g~~~l~q 719 (980)
.+.+++|..+.+....-+.++||....... ..++ .++..+.++++.++.+++.....+...+..+.+....+
T Consensus 155 ~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~v~~g~~~~~I~~~a~ 234 (290)
T 3mt0_A 155 AGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQAEYGFSDEQLHIEEGPADVLIPRTAQ 234 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHHHHHTCCTTTEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeccCHHHHHHHHHH
Confidence 467889988887555667888988653210 1111 22344567777777777543334455688888888777
Q ss_pred HhCCCCCCCcEEEecCcc
Q 002018 720 TMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 720 ~~GlG~l~PNtv~lg~~~ 737 (980)
..+ .+.|+||-..
T Consensus 235 ~~~-----~dLiVmG~~g 247 (290)
T 3mt0_A 235 KLD-----AVVTVIGTVA 247 (290)
T ss_dssp HHT-----CSEEEEECCS
T ss_pred hcC-----CCEEEECCCC
Confidence 654 7899999653
No 21
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=37.05 E-value=1.5e+02 Score=26.70 Aligned_cols=97 Identities=9% Similarity=-0.020 Sum_probs=55.8
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCCC-----------------cc-chHHHHHHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGDY-----------------HE-CAEDAKTACKQLA 690 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~~-----------------~~-~~~~~~~~~~~~~ 690 (980)
.+||.++.. +...+.+++|..+.+....-+.++||...+. .+ ..++.++..++..
T Consensus 4 ~ILv~vD~s-------~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (147)
T 3hgm_A 4 RIMVPVDGS-------KGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAK 76 (147)
T ss_dssp EEEEECCSB-------HHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHH
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHH
Confidence 467777531 2344677888888765445677889876421 00 0112233334455
Q ss_pred HHHHhhcccc--eEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 691 TYIDYKRCEG--VAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 691 ~~~~~~~~~~--f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
+.++..+++. +-..+...+..+.+....+. .+.+.++||-..
T Consensus 77 ~~~~~~g~~~~~~~~~~~~g~~~~~I~~~a~~-----~~~dliV~G~~~ 120 (147)
T 3hgm_A 77 TRATELGVPADKVRAFVKGGRPSRTIVRFARK-----RECDLVVIGAQG 120 (147)
T ss_dssp HHHHHTTCCGGGEEEEEEESCHHHHHHHHHHH-----TTCSEEEECSSC
T ss_pred HHHHhcCCCccceEEEEecCCHHHHHHHHHHH-----hCCCEEEEeCCC
Confidence 5555555544 12334445777777666664 348899999764
No 22
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.10 E-value=29 Score=21.58 Aligned_cols=17 Identities=29% Similarity=0.432 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHcc
Q 002018 826 DAEVLKADVKKFLYDLR 842 (980)
Q Consensus 826 ~~~~~~~~l~~ll~~~R 842 (980)
+.++.+++++++.+++|
T Consensus 9 eledlqerlrklrkklr 25 (27)
T 3twe_A 9 ELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46777888888888887
No 23
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=30.08 E-value=2.9e+02 Score=24.46 Aligned_cols=122 Identities=8% Similarity=0.036 Sum_probs=67.3
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecC-C--Cccc----hHH-----HHHHHHHHHHHHHhh
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDG-D--YHEC----AED-----AKTACKQLATYIDYK 696 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~-~--~~~~----~~~-----~~~~~~~~~~~~~~~ 696 (980)
.+||.++.. +.....+++|..+.+....-+.++||... + +... .++ .++.++.++++.++.
T Consensus 4 ~ILv~~D~s-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 76 (141)
T 1jmv_A 4 HILVAVDLS-------EESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESV 76 (141)
T ss_dssp EEEEEECCS-------TTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHS
T ss_pred eEEEEecCc-------hhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHc
Confidence 477777542 23446778888888654455677888743 1 1100 001 012344566666655
Q ss_pred cccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcccccccccCCcchhHHHHHHHHH-hhcceEEEEec
Q 002018 697 RCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCI-VANKAVVIVKG 770 (980)
Q Consensus 697 ~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~~~~~~~~~v~~i~~~~-~~~~~v~i~r~ 770 (980)
+++.....+...+..+.+....+.. +.+.|+||-. . . .. ..+-.+.+.++ ..++.|+++|.
T Consensus 77 ~~~~~~~~~~~g~~~~~I~~~a~~~-----~~dliV~G~~-~--~----~~-~~lgs~~~~vl~~~~~pVlvv~~ 138 (141)
T 1jmv_A 77 DYPISEKLSGSGDLGQVLSDAIEQY-----DVDLLVTGHH-Q--D----FW-SKLMSSTRQVMNTIKIDMLVVPL 138 (141)
T ss_dssp SSCCCCEEEEEECHHHHHHHHHHHT-----TCCEEEEEEC-C--C----CH-HHHHHHHHHHHTTCCSEEEEEEC
T ss_pred CCCceEEEEecCCHHHHHHHHHHhc-----CCCEEEEeCC-C--c----hh-hhhcchHHHHHhcCCCCEEEeeC
Confidence 5554223444557777777666653 4789999965 2 1 11 22333444443 35688888774
No 24
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=21.62 E-value=2.6e+02 Score=26.03 Aligned_cols=96 Identities=7% Similarity=-0.009 Sum_probs=50.4
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEE--EEecCCCc--c-----------chHHHHHHHHHHHHHH
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFV--SILDGDYH--E-----------CAEDAKTACKQLATYI 693 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~--~v~~~~~~--~-----------~~~~~~~~~~~~~~~~ 693 (980)
.|||.++.. +....++++|..+.+ ...-+.++ ||++.+.. . ..++.++..+++.+.+
T Consensus 19 ~ILv~vD~s-------~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 90 (163)
T 1tq8_A 19 TVVVGTDGS-------DSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERA 90 (163)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHH
T ss_pred EEEEEcCCC-------HHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777531 234467899999987 44556677 76543210 0 0011122223334444
Q ss_pred HhhcccceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 694 DYKRCEGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 694 ~~~~~~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
+...++.+-..+...+..+.+....+. .+.+.|+||-..
T Consensus 91 ~~~gv~~v~~~v~~G~~~~~I~~~a~~-----~~~DLIV~G~~g 129 (163)
T 1tq8_A 91 HNAGAKNVEERPIVGAPVDALVNLADE-----EKADLLVVGNVG 129 (163)
T ss_dssp HTTTCCEEEEEEECSSHHHHHHHHHHH-----TTCSEEEEECCC
T ss_pred HHcCCCeEEEEEecCCHHHHHHHHHHh-----cCCCEEEECCCC
Confidence 444444222334445676666666554 348999999753
No 25
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=20.45 E-value=4.2e+02 Score=23.27 Aligned_cols=96 Identities=15% Similarity=0.022 Sum_probs=50.9
Q ss_pred ceEEeeCCCCCCCCCCCCchhhhhhHHHhhhCCCeeEEEEEEecCC---Cccc-hH----H-HHHHHHHHHHHHHhhcc-
Q 002018 629 IPLIFCRPWGKLPENVPCHPKLADFANCMKKKGRGMSIFVSILDGD---YHEC-AE----D-AKTACKQLATYIDYKRC- 698 (980)
Q Consensus 629 ~ilv~~~~~~~~~~~~~~~~~L~~fa~~l~k~g~g~~~~~~v~~~~---~~~~-~~----~-~~~~~~~~~~~~~~~~~- 698 (980)
.+||.++.. +...+++++|..+.+....-+.++||.... +... .+ + .++.++.++++.+...+
T Consensus 4 ~ILv~~D~s-------~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 76 (137)
T 2z08_A 4 TILLAYDGS-------EHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALTGVP 76 (137)
T ss_dssp EEEEECCSS-------HHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHHCCC
T ss_pred eEEEEeCCC-------HHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 467777531 234467788888876544556778887532 1100 00 1 11223334444443344
Q ss_pred cceEEEEecCChHHHHHHHHHHhCCCCCCCcEEEecCcc
Q 002018 699 EGVAEIVVAPNMSEGFRGIVQTMGLGNLKPNIVVMRYPE 737 (980)
Q Consensus 699 ~~f~~~~~a~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~ 737 (980)
+.=.. +...+..+.+....+. .+.+.|+||-..
T Consensus 77 ~~~~~-~~~g~~~~~I~~~a~~-----~~~dliV~G~~~ 109 (137)
T 2z08_A 77 KEDAL-LLEGVPAEAILQAARA-----EKADLIVMGTRG 109 (137)
T ss_dssp GGGEE-EEESSHHHHHHHHHHH-----TTCSEEEEESSC
T ss_pred ccEEE-EEecCHHHHHHHHHHH-----cCCCEEEECCCC
Confidence 22222 3445777777666664 337899999764
Done!