Your job contains 1 sequence.
>002019
MWRNLARQSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKS
NLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSS
MLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVK
SLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE
VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKK
RVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSP
PDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRG
YNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID
RMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL
SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLK
IHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINL
SEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAA
RVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLK
ERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPL
GLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA
CKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPP
LPERGDFDLRDVLESPYFFN
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002019
(980 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q93Y94 - symbol:RPOT1 "DNA-directed RNA polymer... 3499 0. 2
UNIPROTKB|Q8VWF8 - symbol:RPOT2 "DNA-directed RNA polymer... 3330 0. 1
UNIPROTKB|P69242 - symbol:RPOT3 "DNA-directed RNA polymer... 2949 2.3e-307 1
TAIR|locus:2047515 - symbol:SCA3 "SCABRA 3" species:3702 ... 2880 4.8e-300 1
DICTYBASE|DDB_G0267416 - symbol:rpmA "DNA-dependent RNA p... 1369 1.8e-146 2
POMBASE|SPAC26H5.12 - symbol:rpo41 "mitochondrial RNA pol... 1275 3.5e-139 2
ASPGD|ASPL0000068622 - symbol:AN7609 species:162425 "Emer... 953 5.4e-137 4
SGD|S000001858 - symbol:RPO41 "Mitochondrial RNA polymera... 1196 2.4e-132 3
UNIPROTKB|F1PCF7 - symbol:POLRMT "DNA-directed RNA polyme... 1245 3.7e-131 2
UNIPROTKB|J9P8Y8 - symbol:POLRMT "DNA-directed RNA polyme... 1227 3.0e-129 2
CGD|CAL0005126 - symbol:RPO41 species:5476 "Candida albic... 1146 1.2e-128 3
RGD|1304599 - symbol:Polrmt "polymerase (RNA) mitochondri... 1217 1.7e-126 2
ZFIN|ZDB-GENE-050208-458 - symbol:si:dkey-21e2.1 "si:dkey... 1236 7.8e-126 1
UNIPROTKB|K7EKS3 - symbol:POLRMT "DNA-directed RNA polyme... 1215 1.2e-125 2
UNIPROTKB|O00411 - symbol:POLRMT "DNA-directed RNA polyme... 1215 1.2e-125 2
MGI|MGI:1915843 - symbol:Polrmt "polymerase (RNA) mitocho... 1197 6.4e-125 2
UNIPROTKB|E1BCZ0 - symbol:POLRMT "DNA-directed RNA polyme... 1170 4.5e-122 2
FB|FBgn0261938 - symbol:mtRNApol "mitochondrial RNA polym... 1127 1.7e-120 2
UNIPROTKB|E1BZ13 - symbol:POLRMT "DNA-directed RNA polyme... 1155 3.2e-119 2
GENEDB_PFALCIPARUM|PF11_0264 - symbol:PF11_0264 "DNA-depe... 546 9.6e-96 4
UNIPROTKB|Q8IIB0 - symbol:PF11_0264 "DNA-directed RNA pol... 546 9.6e-96 4
WB|WBGene00013680 - symbol:Y105E8A.23 species:6239 "Caeno... 845 1.1e-95 2
CGD|CAL0002343 - symbol:orf19.6499 species:5476 "Candida ... 447 1.9e-69 5
UNIPROTKB|Q5AH39 - symbol:CaO19.13852 "DNA-directed RNA p... 447 1.9e-69 5
UNIPROTKB|K7ESD1 - symbol:POLRMT "DNA-directed RNA polyme... 265 1.1e-21 1
>UNIPROTKB|Q93Y94 [details] [associations]
symbol:RPOT1 "DNA-directed RNA polymerase 1, mitochondrial"
species:4096 "Nicotiana sylvestris" [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
EMBL:AB058956 EMBL:AB058954 EMBL:AJ416568 ProteinModelPortal:Q93Y94
Uniprot:Q93Y94
Length = 1002
Score = 3499 (1236.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 679/976 (69%), Positives = 773/976 (79%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTXXXXXXXXXXXXXXXXXXXXXXVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L +QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS----GSLGFLRSYGSAAEAIASTSEEDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSL 305
AA IGEAIE+EARI F + TKK NA L GD E + P +V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNA----LSGDLE---DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I +N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLE 724
RSPSPE+ IS++P+H DGSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVL+
Sbjct: 687 RSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLD 746
Query: 725 IMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCA 784
IM+ DA KDPA P ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER
Sbjct: 747 IMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGV 806
Query: 785 IEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPV 844
IEDD++LF AACYAAKTTLTALGEMFEAARSIMSWLG+CAK+IA EN VRWTTPLGLPV
Sbjct: 807 IEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPV 866
Query: 845 VQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRA 904
VQPY +LGRHLI+TSLQ L LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA+ACK +
Sbjct: 867 VQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKES 926
Query: 905 GLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPER 964
GLSFAGVHDSYWTHA DVDQMN+ILREKFVELY+ PILE+LL SFQ+ FP L FPPLPER
Sbjct: 927 GLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPER 986
Query: 965 GDFDLRDVLESPYFFN 980
GDFDLR+VLESPYFFN
Sbjct: 987 GDFDLREVLESPYFFN 1002
Score = 50 (22.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++Q+ +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKQAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGLSQNSIFS 60
>UNIPROTKB|Q8VWF8 [details] [associations]
symbol:RPOT2 "DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial" species:4096 "Nicotiana sylvestris"
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507
GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AB058957 EMBL:AB058958
EMBL:AJ302019 ProteinModelPortal:Q8VWF8 Uniprot:Q8VWF8
Length = 1020
Score = 3330 (1177.3 bits), Expect = 0., P = 0.
Identities = 647/993 (65%), Positives = 759/993 (76%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL----KKITSLETQ--TLLDSSCP--LLGFRR 51
MWRN+ +Q S+R K S ++T +FL I T+ +L+ SC ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TSFLSSQKSNLGQSNFTQSIYP-FGVLTXXXXXXXXXXXXXXXXXXXXXXVQELIDQFNE 110
L + + F V E+ + E
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTE 154
Query: 111 KGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQ 170
+ ++ + +GMG KY LKRRQ+K+ETEAWEQAAKEY++LL DMCEQ
Sbjct: 155 LKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQ 214
Query: 171 KLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKL 230
KLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LPADMMAVITMHKL
Sbjct: 215 KLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKL 274
Query: 231 VGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDP 288
+GLLMT G RVVQAA IG+AIE E RI +F + TKK+ A + + D E +T +
Sbjct: 275 MGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQ 334
Query: 289 XXXXXXXXXXXXRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAY 348
+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG RLI LL++TAY
Sbjct: 335 EKLRK-------KVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAY 387
Query: 349 IQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIP 407
IQPP +QL PPDIRPAFVH++++ KE RRYG+I+CD LV KGLE+T RHM+IP
Sbjct: 388 IQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIP 447
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGST 467
YMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+PVF+ALDTLG+T
Sbjct: 448 YMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNT 507
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIXXXXXXXXXXXXQNS 527
KWR+NKR+L V+DR+WA GG LA LVD++D PLPE+P+T+DE +N
Sbjct: 508 KWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENR 567
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
E+HSQRCDIELKL+VARKMKDEE F+YPHN+DFRGRAYPMHP+LNHLGSD+CRGVLEF E
Sbjct: 568 ERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAE 627
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G PLG++GL WLKIHLANL+AGGV+KLS EGR+ FTENH+DDIFDS+D+PLEGRRWWL A
Sbjct: 628 GRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNA 687
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVG 707
EDPFQCLA CINLSEA+RS SPE+++SHIPVH DGSCNGLQHYAALGRDKLGAAAVNLV
Sbjct: 688 EDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVA 747
Query: 708 GDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVT 767
G+KPADVYSGIAARVL+IM+ DA +DPA +P A AR+L+NQVDRKLVKQTVMTSVYGVT
Sbjct: 748 GEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVT 807
Query: 768 YIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVI 827
YIGARDQIK+RLKER AI DDS+LFGAACYAAK TLTALGEMFEAARSIM+WLGECAK+I
Sbjct: 808 YIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKII 867
Query: 828 ASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVH 887
ASEN+ VRWTTPLGLPVVQPY ++GRHLI+TSLQ L LQRET+KVMVKRQRTAFPPNF+H
Sbjct: 868 ASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIH 927
Query: 888 SLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLA 947
SLDGSHMMMTAVAC+RAGL+FAGVHDSYWTHACDVD++NRILREKFVELYE PILE LL
Sbjct: 928 SLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLE 987
Query: 948 SFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
SFQ +P L FPPLPERGDFD+RDVLESPYFFN
Sbjct: 988 SFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020
>UNIPROTKB|P69242 [details] [associations]
symbol:RPOT3 "DNA-directed RNA polymerase 3, chloroplastic"
species:4096 "Nicotiana sylvestris" [GO:0009536 "plastid"
evidence=IDA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:AB084950 EMBL:AB084951 EMBL:AJ302020
ProteinModelPortal:P69242 Uniprot:P69242
Length = 977
Score = 2949 (1043.2 bits), Expect = 2.3e-307, P = 2.3e-307
Identities = 558/850 (65%), Positives = 670/850 (78%)
Query: 137 KYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAK 196
+Y ML+RRQIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K
Sbjct: 139 RYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEK 198
Query: 197 DQATAQDKWKHMT-YAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGE 252
+Q A+ KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG
Sbjct: 199 EQ-NAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGM 257
Query: 253 AIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSLIKKQKLQ 312
A+ENE RI +F + TKK + E ++ + RV SLIK+ ++
Sbjct: 258 AVENEVRIHNFLEKTKKLQKHMTGAQSQ-EDMSRE-------TMILRKRVKSLIKRNRVV 309
Query: 313 QVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLK 372
+VR ++K + + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H +
Sbjct: 310 EVRKLMKSE-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFR 368
Query: 373 SFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLP 430
T++ K ++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLP
Sbjct: 369 IATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLP 428
Query: 431 SYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
SY+MRTHG+R+Q++ ++ P Q++ V++ALDTLGSTKWRVNKRIL V++ +WA GG +A
Sbjct: 429 SYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIA 488
Query: 491 GLVDQEDVPLPEKPNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEE 550
GLVD++DVP+PE ++DD E+ N E HSQRCD ELKLSVARK+KDEE
Sbjct: 489 GLVDRKDVPIPEL-HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEE 547
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
GFYYPHNLDFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WLKIHLA+LYAGG
Sbjct: 548 GFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGG 607
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
++KL Y+ R+AF ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINLSEAL+S SP
Sbjct: 608 IEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPH 667
Query: 671 STISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADA 730
+ SH+P+H DGSCNGLQHYAALGRD + AAAVNLV GDKPADVY+ IA RV I+R D+
Sbjct: 668 TVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDS 727
Query: 731 DKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSK 790
KDPAT P A A+LLI+QVDRKLVKQTVMTSVYGVTY+GAR+QIK+RL+E+ I+DD
Sbjct: 728 IKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRL 787
Query: 791 LFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQ 850
LF A+CYAAK TL ALGE+F+AAR M+WLG+CAKVIASENQ VRWTTPLGLPVVQPY +
Sbjct: 788 LFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFK 847
Query: 851 LGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAG 910
RH+IRTSLQ LALQRE D V V++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL FAG
Sbjct: 848 TQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAG 907
Query: 911 VHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPERGDFDLR 970
VHDS+WTHACDVDQMNRILREKFVELY PILEDLL SFQ +P L FPPLP+RGDFDL
Sbjct: 908 VHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLV 967
Query: 971 DVLESPYFFN 980
+VLESPYFFN
Sbjct: 968 EVLESPYFFN 977
>TAIR|locus:2047515 [details] [associations]
symbol:SCA3 "SCABRA 3" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0005739 GO:GO:0009507 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006351 EMBL:AC005967
GO:GO:0003899 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 EMBL:Y08722 EMBL:Y08463 IPI:IPI00536028
PIR:G84632 RefSeq:NP_179989.1 UniGene:At.21683
ProteinModelPortal:O24600 SMR:O24600 IntAct:O24600 STRING:O24600
PRIDE:O24600 EnsemblPlants:AT2G24120.1 GeneID:816946
KEGG:ath:AT2G24120 GeneFarm:2877 TAIR:At2g24120
HOGENOM:HOG000241996 InParanoid:O24600 OMA:TQAKLGS PhylomeDB:O24600
ProtClustDB:CLSN2683020 Genevestigator:O24600 Uniprot:O24600
Length = 993
Score = 2880 (1018.9 bits), Expect = 4.8e-300, P = 4.8e-300
Identities = 543/868 (62%), Positives = 672/868 (77%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXX 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E + L
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEELKEKQLLRK------- 312
Query: 295 XXXXXXRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
RV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 313 ------RVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKE--ALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK + RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+ALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIXXXXXXXXXXXXQNSEKHSQ 532
+ IL V++R+WA GG +AGLV++EDVP+PEKP+++D E+ N E+HS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG LEF EG PLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
K+GLHWLKIHLANLYAGGV+KLS++ R+AF ENHLDDI DSA+ P+ G+RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 653 CLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPA 712
CLA C+ L++AL+SPSP S ISH+P+H DGSCNGLQHYAALGRD AAAVNLV G+KPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 713 DVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGAR 772
DVYS I+ RV EIM+ D+ KDP + P A+ A++LI QVDRKLVKQTVMTSVYGVTY+GAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 773 DQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQ 832
+QIK+RL+E+ I D+ LF AACY+AK TL ALGE+FEAAR+IMSWLG+CAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 833 AVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGS 892
VRW TPLGLPVVQPY + RHLIRTSLQ LALQRE + V V++QRTAFPPNFVHSLDG+
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905
Query: 893 HMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQ 952
HMMMTAVAC+ AGL+FAGVHDSYWTHACDVD MNRILREKFVELY PILEDLL SFQ+
Sbjct: 906 HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 965
Query: 953 FPKLNFPPLPERGDFDLRDVLESPYFFN 980
+P L FPP+P+RGDFDL++VL+S YFFN
Sbjct: 966 YPNLVFPPVPKRGDFDLKEVLKSQYFFN 993
>DICTYBASE|DDB_G0267416 [details] [associations]
symbol:rpmA "DNA-dependent RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0006390 "transcription
from mitochondrial promoter" evidence=IDA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA;IC] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=ISS] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
dictyBase:DDB_G0267416 GenomeReviews:CM000150_GR GO:GO:0005759
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003899 GO:GO:0006390
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
HSSP:P00573 EMBL:AF361480 EMBL:AY040092 RefSeq:XP_647347.1
ProteinModelPortal:Q95NZ8 EnsemblProtists:DDB0191106 GeneID:8616158
KEGG:ddi:DDB_G0267416 OMA:FINIDEQ ProtClustDB:CLSZ2729360
Uniprot:Q95NZ8
Length = 950
Score = 1369 (487.0 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
Identities = 295/695 (42%), Positives = 416/695 (59%)
Query: 301 RVTSLIKKQKLQQVRGIVKGHVDS---KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG 357
+++ LI L++ + ++D P +D + +G L+ + + IQ + LG
Sbjct: 280 KISKLIPNSALKKFYNLSTDNLDVIVLPPESKD-IFSIGEFLVSQVFKHCTIQ---ESLG 335
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVI---ECDPLVRKGLE--KTGRHMIIPYMPML 412
+ PAF T++S ++ + VI L+ G E +TG + P M+
Sbjct: 336 EDGSKQSPAF--TIQSHYANGVRTTK--VIPHKNIFKLIEAGHEIRETGGARLFP---MV 388
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
+ PL W G + +MRT+G+ Q T+ S + +++AL+ LG T W +N
Sbjct: 389 IKPLPWITPTEGPYLHYKVPIMRTNGSAMQLRTLV---DSDMSLIYRALNILGETPWVIN 445
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNT---DDETEIXXXXXXXXXXXXQNSEK 529
+ + VI WA+GG + + + D PE + D E N
Sbjct: 446 RDLYNVILEAWANGGNIGDIPKRTDFEYPEISDDMLFDHEAR-KELYKKEQRIKSLNFNL 504
Query: 530 HSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGH 589
HS RCD KL VARK D Y+PHN+DFRGR+YP+ P+LNHLGSD CR +L+FE+
Sbjct: 505 HSLRCDTNYKLEVARKFLDHT-LYFPHNIDFRGRSYPIPPHLNHLGSDFCRSLLKFEKSL 563
Query: 590 PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAED 649
PLG+ GL WLKIH+ANLY GVDK+ R+AFTE ++++IFDS D PL G +WWL A++
Sbjct: 564 PLGEKGLEWLKIHVANLY--GVDKIPLNERLAFTERNMENIFDSVDSPLNGNKWWLKADN 621
Query: 650 PFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGD 709
P+Q LA C+ L++A+RS P +S++P+H DG+CNGLQHYAALG D GA VNL+ D
Sbjct: 622 PWQTLAACMELTKAIRSGKPAEFLSNLPIHQDGTCNGLQHYAALGGDVWGAEKVNLLPSD 681
Query: 710 KPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYI 769
P DVYS +A V +I+ DA A+ + +VDRKLVKQTVMTSVYGVTYI
Sbjct: 682 CPQDVYSSVAQLVEQIVEEDAKNGD------EIAQFFLGKVDRKLVKQTVMTSVYGVTYI 735
Query: 770 GARDQIKKRLKERCA-IE-DDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVI 827
GAR+QI+ + E+ + ++ D+ +F ++ Y K T +L MF ARSIM W+ +CA +I
Sbjct: 736 GAREQIENAILEKFSDLDLDEDFIFKSSTYITKNTFASLNNMFVGARSIMKWMSDCATLI 795
Query: 828 ASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMV--KRQRTAFPPNF 885
A V W TPLGLPVVQPY + G++ IRT + D + V RQR+AFPPNF
Sbjct: 796 AKSGHCVTWNTPLGLPVVQPYKKGGKYNIRTLECDFIVVHNDDLLQVDSNRQRSAFPPNF 855
Query: 886 VHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDL 945
+HSLD +HM +TA+ C G++++ VHDSYWTHA VD+MN ILR +FVEL++QPILE L
Sbjct: 856 IHSLDSTHMFLTAMTCYDQGITYSSVHDSYWTHASTVDRMNDILRNEFVELHKQPILERL 915
Query: 946 LASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
L FQ ++P + FP LP++G+ D+ V ES YFF+
Sbjct: 916 LEWFQVRYPDIKFPKLPKKGELDINKVKESRYFFH 950
Score = 83 (34.3 bits), Expect = 1.8e-146, Sum P(2) = 1.8e-146
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT 200
L++ Q +E EA + A Y+DL+ D + + ++ + + W E L + + KD AT
Sbjct: 150 LRKIQTLLEFEAIDDAVTRYRDLMLDSKGKSFVTSFKSIRDVLMQWNEGLTEKVQKDLAT 209
Query: 201 A-QDK-W 205
QD W
Sbjct: 210 KDQDAAW 216
>POMBASE|SPAC26H5.12 [details] [associations]
symbol:rpo41 "mitochondrial RNA polymerase Rpo41"
species:4896 "Schizosaccharomyces pombe" [GO:0000002 "mitochondrial
genome maintenance" evidence=ISS] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005759 "mitochondrial matrix"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006390
"transcription from mitochondrial promoter" evidence=ISS]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 PomBase:SPAC26H5.12 GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0005759 GO:GO:0000002 GO:GO:0003899
GO:GO:0006390 eggNOG:COG5108 Gene3D:1.10.287.260 PANTHER:PTHR10102
PIR:T38431 RefSeq:NP_594459.2 STRING:O13993
EnsemblFungi:SPAC26H5.12.1 GeneID:2542687 OrthoDB:EOG4M0J8T
NextBio:20803735 GO:GO:0001044 Uniprot:O13993
Length = 1154
Score = 1275 (453.9 bits), Expect = 3.5e-139, Sum P(2) = 3.5e-139
Identities = 312/864 (36%), Positives = 454/864 (52%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFE 188
+G A+ +L++ I E W+ E++ +L + ++ N V SLF W+
Sbjct: 280 QGDTFNLARQKLLEKSAILSAAEVWKS---EHESVL-NRGNLQVPKN---VSSLFYSWYV 332
Query: 189 PLRDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 239
L ++ + D K + Y P+ L + +A +T+ + V L TN
Sbjct: 333 QLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME-VAQLSTNPR 391
Query: 240 E---VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPXXXXXXXX 296
RV +G + E E + + K K+ D + L NDP
Sbjct: 392 YDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKDKKR---LKELFNDPR------- 441
Query: 297 XXXXRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+ +K +L R ++ VDS W ++KVG + LL+ A I+
Sbjct: 442 ----KFRQAVKNLRLSNTRDNIVLNPSVDS--WPSAIVMKVGSVALCLLLSVAKIEVTAK 495
Query: 355 QL--GDSPPDIRPAFVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPY 408
L G AFVHT + ++ GR+ G+I E L+ + +EK H+
Sbjct: 496 DLSTGGILKQEVAAFVHTYQ-YSN----GRKVGMIVPHVEFYKLLSRDIEKP--HLHPQL 548
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGST 467
+PMLV P W + GG+++ ++R GA +Q + + K + QL+ +F+A+ +LG
Sbjct: 549 LPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKV 608
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQE---DVPLPEKPNTDDETEIXXXXXXXXXXXX 524
WR+N+R+ V+ R+W SG + +E D+P P N+ + +
Sbjct: 609 SWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMP-PYPKNSINPRDKVIWHTRRKELAA 667
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ +L+H+ +D+CRG+LE
Sbjct: 668 LKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLE 726
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F G PLG GL+WLK+HLANL+ G+ K + R AF ++++ ++FDSADRPL+G +WW
Sbjct: 727 FSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDGNKWW 784
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVN 704
A+DPFQ LA C ++EA+RS ES ISHIP+ DG+CNGLQHYAALG D GA VN
Sbjct: 785 SKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQVN 844
Query: 705 LVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVY 764
L D P+DVY +A V ++ DA+ A L ++V R +VK TVMT+VY
Sbjct: 845 LWPSDHPSDVYEAVAEIVRGFLKKDAEAGD------EMANFLKDKVTRSVVKPTVMTNVY 898
Query: 765 GVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECA 824
GVTY+GAR QI ++L+ +E K+ A Y K AL +F A I WL C
Sbjct: 899 GVTYVGARKQISEKLENIDGMEK-LKVADYANYLTKKVFEALRSLFTQAHEIQDWLSACC 957
Query: 825 KVIA-------------SENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRE--T 869
+I E V WTT L LP+VQPY IRT+LQT+ ++ T
Sbjct: 958 NLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVFIEERDRT 1017
Query: 870 DKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRIL 929
V +Q TAFPPNF+HSLD +HM MT + C ++FA VHDSYWTHACDVDQMN +L
Sbjct: 1018 ATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSYWTHACDVDQMNSLL 1077
Query: 930 REKFVELYEQPILEDLLASFQKQF 953
RE FV L+ I+E L F++++
Sbjct: 1078 REAFVLLHSNNIMERLKQEFEERY 1101
Score = 108 (43.1 bits), Expect = 3.5e-139, Sum P(2) = 3.5e-139
Identities = 23/39 (58%), Positives = 26/39 (66%)
Query: 943 EDLLASF-QKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
EDL A F K + L FPPLP RG DL+ VLES YFF+
Sbjct: 1116 EDLKAKFGNKSYIPLEFPPLPARGALDLKKVLESKYFFS 1154
>ASPGD|ASPL0000068622 [details] [associations]
symbol:AN7609 species:162425 "Emericella nidulans"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001044 "mitochondrial RNA polymerase regulatory region
sequence-specific DNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 GO:GO:0003677 GO:GO:0006351 EMBL:BN001304
EMBL:AACD01000130 GO:GO:0003899 eggNOG:COG5108 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 OrthoDB:EOG4M0J8T
RefSeq:XP_680878.1 STRING:Q5AVS1 EnsemblFungi:CADANIAT00000724
GeneID:2869348 KEGG:ani:AN7609.2 HOGENOM:HOG000167182 OMA:LQAEDPW
Uniprot:Q5AVS1
Length = 1391
Score = 953 (340.5 bits), Expect = 5.4e-137, Sum P(4) = 5.4e-137
Identities = 255/745 (34%), Positives = 374/745 (50%)
Query: 110 EKGV---SILDSSSMLDKQPKKKGTGMG--TAKYYMLKRRQ------IKIETEAWEQAAK 158
+KG+ S+ DS S + KK M + + Y +R+Q +K W Q K
Sbjct: 312 QKGLGLSSLKDSMSSVFADDAKKIPAMDEESREVYQQRRQQQLEADVMKSAVNRWRQENK 371
Query: 159 EYQDLLADMCE--QKLAPNL-PYVKSLFLGWFEPLRDAI-AKDQATAQDKWKH-MTYAPY 213
Q D+ E ++L P L + L + E ++ A+ + D+ + + Y PY
Sbjct: 372 IQQQFQPDVFENGKQLGPLLRQWNADLVVRIEEEFKEIEKARTASMITDEVRERVDYGPY 431
Query: 214 FNNLPADMMAVITMHKLVGLLMTNAGE--VRVVQAACQIGEAIENEARIQSFFKSTKKKN 271
+ + +A +T+ + L N + +++ A IG + E +Q + KK+
Sbjct: 432 LRMVKPEELASLTILTTINNLTRNGLDKGIKLAPLAVAIGNDVYEEVALQRMVERRKKEM 491
Query: 272 ATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDA 331
+ + ++ + + +K + Q+ IV W
Sbjct: 492 NSAHRVKLIKQIFLG----RKDRDKLKGINWKNALKSME-QEEPDIV--------WATAI 538
Query: 332 LVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIR--PAFVHTLKSFTKEALKGRRYGVIEC 389
KVG L+ LL + A + PV++ + R + + + + GRR G I
Sbjct: 539 KAKVGAVLMSLLYDVAKVPVPVNEAAAAKKIKRRDEVVMQPVFQHSYQITWGRRTGYIHV 598
Query: 390 DPLVRKGLEKT-GRHMIIPYMPMLVPPLNWRGYNRGGHFFLPS-YVMRTHGARQQRETIK 447
+P + K L + ++ +PML P W+GY G +F+ + +V T G Q +K
Sbjct: 599 NPEMIKLLTREPAEDLLGRQLPMLCKPRPWKGYKDGAYFYHQNLFVRSTPGESLQPTYVK 658
Query: 448 MTPRSQ-LEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQE-DVPLPEKPN 505
+ L+ + + LD LG T W +N+ + V+ W +G +A L + D+P+P KP+
Sbjct: 659 AALENDGLKMIRKGLDILGGTGWVINRDVFNVMLEAWNTGEPIADLAPLDPDLPIPPKPS 718
Query: 506 TDDETEIXXX-XXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRA 564
++ E Q HSQRC ++ VAR +E FY PHN+DFRGRA
Sbjct: 719 PEEGYEAEKEWHTKVRDIENQRGGYHSQRCFQNFQMEVARSYLNET-FYLPHNMDFRGRA 777
Query: 565 YPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTE 624
YP+ PYLN + +D RG+L F E PLG++GL WLKI +ANL G DK S R F
Sbjct: 778 YPIPPYLNQMAADNARGLLLFSEAKPLGESGLRWLKIQIANL--AGFDKASLSEREQFAM 835
Query: 625 NHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSC 684
+HLDD+ DSA+ L GRRWWL AEDP+QCLA C L AL+ P+P S +P+H DGSC
Sbjct: 836 DHLDDVLDSANNGLHGRRWWLQAEDPWQCLAACCELRNALQHPNPTEYASRLPIHQDGSC 895
Query: 685 NGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADK-DPATYPYASCA 743
NGLQHYAALG DKLGA VNL D+P+DVYS +A V E + +A + DP A
Sbjct: 896 NGLQHYAALGGDKLGAQQVNLEPSDRPSDVYSAVAQYVKEAVATEAAQGDPI-------A 948
Query: 744 RLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCA-IEDDSKLFGAACYAAKTT 802
++L ++ RK+VKQTVMT+VYGVT+IGA QI+K+L + D K GA Y A+
Sbjct: 949 KMLEGKITRKVVKQTVMTNVYGVTFIGAMKQIRKQLANHYPELSDHEKKTGAI-YIARKV 1007
Query: 803 LTALGEMFEAARSIMSWLGECAKVI 827
ALG MFE AR I WLG+ A I
Sbjct: 1008 FQALGTMFEGARDIQHWLGDSANRI 1032
Score = 352 (129.0 bits), Expect = 5.4e-137, Sum P(4) = 5.4e-137
Identities = 66/133 (49%), Positives = 99/133 (74%)
Query: 834 VRWTTPLGLPVVQPY-HQLGRHLIRTSLQTLALQRETDKVMVKRQRT--AFPPNFVHSLD 890
V WTTPLGLPVVQPY ++L R ++ TS Q+L++ + + V R++ AFPPNF+HSLD
Sbjct: 1081 VIWTTPLGLPVVQPYRNRLPRRVV-TSFQSLSVVEQDSRYCVTRRKQLQAFPPNFIHSLD 1139
Query: 891 GSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQ 950
+HMM++A+AC +AGL+F+ VHDS+WTH DVD MNRILRE FV+++ +++ L A F+
Sbjct: 1140 ATHMMLSAIACHQAGLTFSAVHDSFWTHPSDVDSMNRILREAFVQMHSDDVIKRLAAEFE 1199
Query: 951 KQFPK-LNFPPLP 962
++ + L++ +P
Sbjct: 1200 VRYGRNLHYARVP 1212
Score = 60 (26.2 bits), Expect = 5.4e-137, Sum P(4) = 5.4e-137
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 956 LNFPPLPERGDFDLRDVLESPYFFN 980
+ F P+P +G +D+ + ES YFF+
Sbjct: 1367 MRFRPVPTKGAWDVSRIRESKYFFS 1391
Score = 41 (19.5 bits), Expect = 5.4e-137, Sum P(4) = 5.4e-137
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 30 KITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
++TSL++ S P RR+SF SS+K
Sbjct: 38 RLTSLQSSA--SRSSPENRSRRSSFQSSRK 65
>SGD|S000001858 [details] [associations]
symbol:RPO41 "Mitochondrial RNA polymerase" species:4932
"Saccharomyces cerevisiae" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IEA;IDA]
[GO:0000002 "mitochondrial genome maintenance" evidence=IMP]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;IMP] [GO:0005759 "mitochondrial matrix" evidence=IDA]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IDA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
SGD:S000001858 GO:GO:0003677 EMBL:D50617 EMBL:BK006940
GO:GO:0042645 GO:GO:0000002 GO:GO:0003899 GO:GO:0006390
GO:GO:0034245 eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 OrthoDB:EOG4M0J8T
EMBL:M17539 PIR:S56218 RefSeq:NP_116617.1 ProteinModelPortal:P13433
DIP:DIP-2431N IntAct:P13433 MINT:MINT-500319 STRING:P13433
PaxDb:P13433 PeptideAtlas:P13433 PRIDE:P13433 EnsemblFungi:YFL036W
GeneID:850507 KEGG:sce:YFL036W HOGENOM:HOG000248537 OMA:HLIQDWL
NextBio:966215 Genevestigator:P13433 GermOnline:YFL036W
Uniprot:P13433
Length = 1351
Score = 1196 (426.1 bits), Expect = 2.4e-132, Sum P(3) = 2.4e-132
Identities = 268/658 (40%), Positives = 377/658 (57%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPP-VDQLGDSPPDIR-PAFVHTLKSFTKEALKGRRY 384
W Q ++G LI +L++ A + VD + + PAF H + G +
Sbjct: 592 WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAPAFAHGYQYHN-----GSKL 646
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYM-PMLVPPLNWRGYNRGGHFFLPSYVMRTHGAR 440
GV++ + + L G +I P + PMLV P W + GG+ + S ++RT +
Sbjct: 647 GVLKIHKTLIRQLN--GERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSP 704
Query: 441 QQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG-GCL--AGLVDQE 496
+Q +K + ++ V+ L+ LG T W VN+++ V+ ++W G G L G D+
Sbjct: 705 EQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEM 764
Query: 497 DVPLPEKPNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEEGFYYPH 556
+P P P D + + + S S RCD KL +AR E+ Y+PH
Sbjct: 765 VLP-PAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEK-LYFPH 822
Query: 557 NLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSY 616
NLDFRGRAYP+ P+ NHLG+D+ RG+L F G LG +GL WLKIHL+NL+ G DKL
Sbjct: 823 NLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--GFDKLPL 880
Query: 617 EGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHI 676
+ RVAFTE+HL DI DSA+ PL G RWW A+ P+Q LATC L+E ++ +PE ISH
Sbjct: 881 KDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPEEFISHQ 940
Query: 677 PVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPAT 736
PVH DG+CNGLQHYAALG D GA VNLV DKP DVY+ +A V + + A+K
Sbjct: 941 PVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAAEKGDEN 1000
Query: 737 YPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSK-LFGAA 795
A++L +++ RK+VKQTVMT+VYGVTY+GA QI K+L I DD K +
Sbjct: 1001 ------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSP---IFDDRKESLDFS 1051
Query: 796 CYAAKTTLTALGEMFEAARSIMSWLGECAKVIASE-------------NQ-----AVRWT 837
Y K +A+ E+F +A I WLGE AK I+ N+ +V WT
Sbjct: 1052 KYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDEKSFKNGNKPDFMSSVIWT 1111
Query: 838 TPLGLPVVQPYHQLGRHLIRTSLQTLALQRE--TDKVMVKRQRTAFPPNFVHSLDGSHMM 895
TPLGLP+VQPY + + + T+LQT+ + + V +RQ+ PPNF+HSLD SHM+
Sbjct: 1112 TPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFIHSLDASHML 1171
Query: 896 MTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF 953
++A C + GL FA VHDSYWTHA D+D MN +LRE+F++L+E ++ L F +++
Sbjct: 1172 LSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLKEEFDQRY 1229
Score = 74 (31.1 bits), Expect = 2.4e-132, Sum P(3) = 2.4e-132
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LP VK L + ++ + + + Y PY + M VIT+ +L+ L
Sbjct: 462 LPLVKEEINHCRSLLSEKLSDKKGLNKVDTNRLGYGPYLTLIDPGKMCVITILELLKLNS 521
Query: 236 TNA--GEVRVVQAACQIGEAIENEARIQSFFKS 266
T +R +A +G+AIE E R + KS
Sbjct: 522 TGGVIEGMRTARAVISVGKAIEMEFRSEQVLKS 554
Score = 63 (27.2 bits), Expect = 2.4e-132, Sum P(3) = 2.4e-132
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 956 LNFPPLPERGDFDLRDVLESPYFFN 980
L P +P +GDFD+ + S YFF+
Sbjct: 1327 LRLPEIPPKGDFDVTVLRNSQYFFS 1351
>UNIPROTKB|F1PCF7 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 EMBL:AAEX03012675 EMBL:AAEX03012674
Ensembl:ENSCAFT00000031345 Uniprot:F1PCF7
Length = 1221
Score = 1245 (443.3 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 277/686 (40%), Positives = 383/686 (55%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW LV++G RL +LL+ET I P + P H SF R+
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-PGSLAAPQGACTLIPVLYHVY-SFRSF----RQI 605
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + L H +I +PML PPL W + G P+ +MR+ G
Sbjct: 606 GILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTM 665
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q + + P ++L AL LG+ WRVN R+L ++ ++A+ GC L +
Sbjct: 666 QHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPSEA 725
Query: 499 PLPEK---PNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P + E HS R D +LS+A+ ++ F+ P
Sbjct: 726 PRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FWLP 784
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL NL G+ K
Sbjct: 785 HNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKKHE 842
Query: 616 -YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
+ R+ F + +DDI DSADRP+ GR+WW+ ++P+Q LA C+ ++ A+RSP P + +S
Sbjct: 843 PLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPTAFVS 902
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H PVH DGSCNGLQHYAALGRD +GAA+VNL+ D P DVYSG+AA+V R DA +
Sbjct: 903 HFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDAQRG- 961
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGA 794
A++L + RK+VKQTVMT VYGVT G R QI++RL+E + ++ A
Sbjct: 962 -----VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF-VWEA 1015
Query: 795 ACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH 854
+ Y + +L EMF R+I WL E A++IA AV W TPLG+P++QPYH+ +
Sbjct: 1016 SHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHRDSKV 1075
Query: 855 LIRTSLQTLALQRE---TDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGV 911
+I +Q+L T K +Q+ FPPNF+HSLD SHMM+TA+ C R GL+F V
Sbjct: 1076 MIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1135
Query: 912 HDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF---------PKLNF---- 958
HD +WTHA DV MN++ RE+FV L+ QPIL +L ++F PK ++
Sbjct: 1136 HDCFWTHAADVAVMNQVCREQFVHLHSQPILHNLSRFLVERFCCSSRSLKHPKDSWISKL 1195
Query: 959 ----PPLPERGDFDLRDVLESPYFFN 980
+PE G FDL V S YFF+
Sbjct: 1196 QDTLKAVPETGAFDLEQVKHSTYFFS 1221
Score = 62 (26.9 bits), Expect = 3.7e-131, Sum P(2) = 3.7e-131
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
GM +M++R+Q+ + +A +Q Y LLA Q AP+LP
Sbjct: 492 GMRVFNRHMVQRKQLSSQVQALQQRYYRYLHLLASDT-QVAAPHLP 536
>UNIPROTKB|J9P8Y8 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR006019
InterPro:IPR006020 InterPro:IPR024075 Pfam:PF00640 Pfam:PF00940
PRINTS:PR00629 PROSITE:PS00489 PROSITE:PS00900 PROSITE:PS01179
SMART:SM00462 InterPro:IPR002885 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0003677 GO:GO:0006351
GO:GO:0005622 PROSITE:PS51375 GO:GO:0003899 Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AAEX03012675
EMBL:AAEX03012674 Ensembl:ENSCAFT00000046349 Uniprot:J9P8Y8
Length = 1414
Score = 1227 (437.0 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 263/634 (41%), Positives = 363/634 (57%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW LV++G RL +LL+ET I P + P H SF R+
Sbjct: 552 QPWPLPVLVELGKRLAELLVETVRI-PGSLAAPQGACTLIPVLYHVY-SFRSF----RQI 605
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + L H +I +PML PPL W + G P+ +MR+ G
Sbjct: 606 GILKPHPAFTELLAAAAEHTLIFEAAEVPMLCPPLPWTSPHTGAFLLSPTKLMRSLEGTM 665
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q + + P ++L AL LG+ WRVN R+L ++ ++A+ GC L +
Sbjct: 666 QHQRLLDSCPPAELHGALDALTQLGNCAWRVNGRVLDLVLELFAAKGCPRLGVPAPPSEA 725
Query: 499 PLPEK---PNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P + E HS R D +LS+A+ ++ F+ P
Sbjct: 726 PRPPEGRLPPDASPAQKAEVRRELARCLKVAREMHSLRSDALYRLSLAQHLRHRV-FWLP 784
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL NL G+ K
Sbjct: 785 HNMDFRGRTYPCPPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKKHE 842
Query: 616 -YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
+ R+ F + +DDI DSADRP+ GR+WW+ ++P+Q LA C+ ++ A+RSP P + +S
Sbjct: 843 PLQARLVFADEVMDDILDSADRPMTGRKWWMEVDEPWQALACCMEIARAVRSPDPTAFVS 902
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H PVH DGSCNGLQHYAALGRD +GAA+VNL+ D P DVYSG+AA+V R DA +
Sbjct: 903 HFPVHQDGSCNGLQHYAALGRDSIGAASVNLLPSDFPQDVYSGVAAQVEVFRRQDAQRG- 961
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGA 794
A++L + RK+VKQTVMT VYGVT G R QI++RL+E + ++ A
Sbjct: 962 -----VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIERRLRELSNFPQEF-VWEA 1015
Query: 795 ACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH 854
+ Y + +L EMF R+I WL E A++IA AV W TPLG+P++QPYH+ +
Sbjct: 1016 SHYLVRQVFNSLQEMFSGTRAIQHWLTESARLIAQTGSAVEWVTPLGIPIIQPYHRDSKV 1075
Query: 855 LIRTSLQTLALQRE---TDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGV 911
+I +Q+L T K +Q+ FPPNF+HSLD SHMM+TA+ C R GL+F V
Sbjct: 1076 MIGGGIQSLTFSNSGDTTQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1135
Query: 912 HDSYWTHACDVDQMNRILREKFVELYEQPILEDL 945
HD +WTHA DV MN++ RE+FV L+ QPIL +L
Sbjct: 1136 HDCFWTHAADVAVMNQVCREQFVHLHSQPILHNL 1169
Score = 62 (26.9 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
GM +M++R+Q+ + +A +Q Y LLA Q AP+LP
Sbjct: 492 GMRVFNRHMVQRKQLSSQVQALQQRYYRYLHLLASDT-QVAAPHLP 536
>CGD|CAL0005126 [details] [associations]
symbol:RPO41 species:5476 "Candida albicans" [GO:0042645
"mitochondrial nucleoid" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0034245 "mitochondrial DNA-directed RNA
polymerase complex" evidence=IEA] [GO:0006390 "transcription from
mitochondrial promoter" evidence=IEA] [GO:0000002 "mitochondrial
genome maintenance" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0001044 "mitochondrial RNA
polymerase regulatory region sequence-specific DNA binding"
evidence=IEA] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0005126 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0003899
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
RefSeq:XP_718901.1 RefSeq:XP_719003.1 STRING:Q5ABC9 GeneID:3639378
GeneID:3639479 KEGG:cal:CaO19.13462 KEGG:cal:CaO19.6041
Uniprot:Q5ABC9
Length = 1300
Score = 1146 (408.5 bits), Expect = 1.2e-128, Sum P(3) = 1.2e-128
Identities = 267/683 (39%), Positives = 372/683 (54%)
Query: 309 QKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFV 368
QKL + R + KG+ + W ++G L+ +LM A + + D PAF
Sbjct: 533 QKLMR-RTMQKGNESTPEWDDATRARIGGVLVSILMSVAKVNVRKETPQGLIEDFHPAFY 591
Query: 369 HTLKSFTKEALKGRRYGVIECDPLVRKGLEKTG-RHMIIPY-MPMLVPPLNWRGYNRGGH 426
H ++ F + G R GVI+ + L T I P +PMLV P W + GG
Sbjct: 592 HGMQ-F----IAGNRVGVIKVHTDISNILSGTSLTESIQPQALPMLVEPKPWNSFYGGGS 646
Query: 427 FFLPSYVMRTHGARQQRETIKMT-PRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS 485
+ + ++R + + +K R L VF+ L+ LG+T W VNK++ VI W S
Sbjct: 647 LYSKTPLVRVKDSPETEAYLKAANERGNLTGVFEGLNVLGNTAWTVNKKVFNVISHYWNS 706
Query: 486 GGCLAGLVDQEDVP-LPEK-PNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVA 543
G + + P LP+ P D ++ + SQRCD +L +A
Sbjct: 707 GEEFLSIPPVSEEPQLPQDIPGNSDPQKLLHHTTSKYQALDEYISNKSQRCDNNYRLEIA 766
Query: 544 RKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHL 603
R E+ ++PHNLDFRGRAYP+ P+ NHLG DL R + F +G LG+ GL+WLKI L
Sbjct: 767 RAFIGEK-LFFPHNLDFRGRAYPISPHFNHLGGDLTRSLFLFWDGKELGEEGLNWLKIQL 825
Query: 604 ANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEA 663
AN+Y GVDK S RV F +L+ + +SA P WW AE P+Q L+ C L+EA
Sbjct: 826 ANVY--GVDKESLAKRVEFVNENLEKVLESAADPFATDAWWQKAEKPWQALSVCFELAEA 883
Query: 664 LRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVL 723
+ P +SH+PVH DG+CNGLQHYAALG D GA VNL DKP DVY+ +A V
Sbjct: 884 YKLDDPTKFVSHLPVHQDGTCNGLQHYAALGGDVEGANQVNLNPSDKPQDVYTYVAKLVE 943
Query: 724 EIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERC 783
++ADA+K A L +++ RK+VKQTVMT+VYGVT+IGA +QI+K++
Sbjct: 944 TRVKADAEKGD------ELAIFLQDKIKRKVVKQTVMTNVYGVTFIGAIEQIRKQIIH-- 995
Query: 784 AIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIAS-------ENQ---- 832
D+ AA Y A ++ E+FE A I +WL E AK I E+Q
Sbjct: 996 LFPKDADHHAAARYLAVQVFASIRELFENAHFIQAWLTESAKRITKSVTLDFGESQYSEQ 1055
Query: 833 ----AVRWTTPLGLPVVQPYHQLGRHLIRTSLQTL--ALQRETDKVMVKRQRTAFPPNFV 886
V WTTPLGLP VQPY + ++T++Q L + T V ++Q+ FPPNF+
Sbjct: 1056 ELLSTVIWTTPLGLPCVQPYRLHKKKQLKTAVQDLNIVMPSNTSAVDSRKQQNGFPPNFI 1115
Query: 887 HSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLL 946
HSLD +HM+MTA C L+FA VHDS+WTHA DV QMNRI+RE+FV+L+ ++E L
Sbjct: 1116 HSLDATHMLMTATKCAEFDLNFASVHDSFWTHAADVPQMNRIIREQFVKLHTTNLIELLK 1175
Query: 947 ASFQKQFPKLNFPPLPERGDFDL 969
F +++ K N+ LP + +L
Sbjct: 1176 EEFSERY-KDNYQVLPIPNNHEL 1197
Score = 78 (32.5 bits), Expect = 1.2e-128, Sum P(3) = 1.2e-128
Identities = 47/178 (26%), Positives = 78/178 (43%)
Query: 103 ELIDQFNEKG-VSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIE-----TEAWEQA 156
E+++Q G ++ + S L + +++ + + +++QI+I E W+
Sbjct: 339 EVLNQDIMSGKINYFEMYSKLKTEEQRQAFNEALNVFNLERQKQIEIRGIEGAKEKWKHD 398
Query: 157 AKEYQ---DL-----LADMCEQKLAPNLPYVKS---LFLGWFEPLRDAIAKDQATAQDKW 205
+E Q DL L C + L LP ++ L I KD A+D+
Sbjct: 399 FEESQKRGDLNLSKGLNAQCYKWLQDVLPVLEKEYKLCEALINGNNSVIEKDDPNAKDR- 457
Query: 206 KHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQA--ACQ-IGEAIENEARI 260
YAP+ + D +IT+ +L L T G VR +A A Q +G+AIE E RI
Sbjct: 458 --AMYAPFILKISPDKAIIITILELFKLHSTG-GVVRGFRAYKAIQSVGKAIEAEYRI 512
Score = 74 (31.1 bits), Expect = 1.2e-128, Sum P(3) = 1.2e-128
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 948 SFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
SFQ P + FP +P +G+FD+ V +S YFF+
Sbjct: 1269 SFQILVP-IQFPEVPSKGEFDVNLVKKSQYFFS 1300
Score = 40 (19.1 bits), Expect = 1.2e-124, Sum P(3) = 1.2e-124
Identities = 25/140 (17%), Positives = 56/140 (40%)
Query: 147 KIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLG-----WFEPLRDAIAKDQATA 201
K + + E+ K Y + Q AP + Y+K++ +F+ + D + K +
Sbjct: 88 KYDLDEEEKIVKYYSSKNDGVEVQPYAPEIQYLKNILESFSEQKYFDKI-DQVLKSLSKL 146
Query: 202 QDKWKHMTYA-PYFNN-LPADMMAVITMHKLVGLLMTNAG-EVRVVQAACQIGEAIENEA 258
+ + Y N L D +++ ++ ++G L + A +G+ + +
Sbjct: 147 VNATEFTDICNKYLENILQDDSLSLQDLNSIIGQLQDKCKFKTNTRTEAIILGKMLNDSD 206
Query: 259 RIQS----FFKSTKKKNATD 274
QS FF + +K+ +
Sbjct: 207 NAQSSISEFFGNMEKQTIVE 226
>RGD|1304599 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA directed)"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISO] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 RGD:1304599 GO:GO:0003677 GO:GO:0006351
GO:GO:0042645 GO:GO:0003899 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 OrthoDB:EOG4CZBF9 IPI:IPI00366179
Ensembl:ENSRNOT00000039232 UCSC:RGD:1304599 Uniprot:D3ZYB6
Length = 1205
Score = 1217 (433.5 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 272/688 (39%), Positives = 384/688 (55%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLG-DSPPDIRPAFVHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ +Q P + P H SF R+
Sbjct: 534 QPWSVPVLLQLGKQLAELLVQA--VQMPRSLAARHGAQNFIPVLYHVY-SFRSY----RQ 586
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 587 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKIMRATEGT 646
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA-GLVD-QED 497
Q + ++ P +QL AL LG+ WRVN R+L ++ +++ GC+ G+ + +
Sbjct: 647 TQHQRLLERCPPAQLHGALDALTQLGNCAWRVNGRLLDLVLQIFRDKGCMRLGVPPPRSE 706
Query: 498 VPLPEKPNTDD-ETEIXXXXXXXXXXXXQNS--EKHSQRCDIELKLSVARKMKDEEGFYY 554
P P K T + + E HS R + +LS+A+ ++D F+
Sbjct: 707 APRPAKHQLPPGSTPVHKSELRKELARCLKAAREMHSLRSEALYRLSLAQHLRDRV-FWL 765
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G +
Sbjct: 766 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLRKRD 824
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + + +I DSAD PL G++WW+ A++P+Q LA C+ +++A+RSP P + +S
Sbjct: 825 SLRMRLAFADEVMGEILDSADNPLTGQKWWMKADEPWQTLACCMEVAQAVRSPDPTAYVS 884
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H+PVH DGSCNGLQHYAALGRD +GAA+VNL D P DVY +A +V E+ + DA +
Sbjct: 885 HLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEELRQQDAKEG- 943
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGA 794
A+ L V RK+VKQTVMT VYGVT G R QI+KRL+E + ++ A
Sbjct: 944 -----LQVAQALEGFVSRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEA 997
Query: 795 ACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH 854
+ Y + +L EMF + R+I WL E A +I+ V W TPLG+P++QPYH+ +
Sbjct: 998 SHYLVRQVFKSLQEMFSSTRAIQRWLTESANLISHAGWPVEWVTPLGIPIIQPYHRESKI 1057
Query: 855 LIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGV 911
++ LQ++ D K +Q+ FPPNF+HSLD SHMM+TA+ C R GL+F V
Sbjct: 1058 QVKGGLQSITFTSSVDDSQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1117
Query: 912 HDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF----------P------- 954
HD +WTHA D+ MN + RE+FV L+ +PILEDL +K+F P
Sbjct: 1118 HDCFWTHAADIPMMNEVCREQFVRLHSEPILEDLAKFLEKRFCSVSNTRSLKPSELALIT 1177
Query: 955 KLN--FPPLPERGDFDLRDVLESPYFFN 980
KL LPE G FDL V+ S YFF+
Sbjct: 1178 KLQETLRSLPETGTFDLGQVIRSTYFFS 1205
Score = 46 (21.3 bits), Expect = 1.7e-126, Sum P(2) = 1.7e-126
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
G+ +++K++Q+ + Q +Y LLA + ++AP LP
Sbjct: 475 GLQVFNRHLVKQKQVTNHVQKLGQQYSQYLRLLAS--DTQVAPCLP 518
>ZFIN|ZDB-GENE-050208-458 [details] [associations]
symbol:si:dkey-21e2.1 "si:dkey-21e2.1" species:7955
"Danio rerio" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 ZFIN:ZDB-GENE-050208-458 GO:GO:0003677
GO:GO:0006351 PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:BX284682 EMBL:BX927243 IPI:IPI00610004
Ensembl:ENSDART00000088169 Uniprot:F1Q5F7
Length = 1281
Score = 1236 (440.2 bits), Expect = 7.8e-126, P = 7.8e-126
Identities = 279/692 (40%), Positives = 398/692 (57%)
Query: 323 DSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDS-PPDIRPAFVHTLKSFTKEALKG 381
D PW +V++G L+ L++ IQ + L + + P H + +F
Sbjct: 608 DDTPWPMILMVQLGSFLVDLMVHELKIQSNI--LNPALEKKLIPILYH-MYTFRSN---- 660
Query: 382 RRYGVIECDPLVRKGL-EKTGRHMIIP-Y-MPMLVPPLNWRGYNRGGHFFLPSYVMR-TH 437
+ G I+ P++ + L E T + Y MPML PP+ W G + P+ +MR +
Sbjct: 661 HKIGFIKPHPILTRILREATETKLTFDSYVMPMLCPPVPWTSPKSGAYLLTPAKLMRASD 720
Query: 438 GARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQ 495
GA Q + ++ T L V +L+ +GS W++NK +L +I ++ G L+
Sbjct: 721 GAMQHQLLLEKTQEEDLHAVLDSLNQVGSCPWKINKPLLDIIISIFNDKGSDKLSIPPPL 780
Query: 496 EDVP-LPE-KPNTDDETEIXXXXXXXXXXXXQN--SEKHSQRCDIELKLSVARKMKDEEG 551
+ P +P P+ T++ + +E HS R D KLS+A ++D+
Sbjct: 781 SEAPEIPRFNPHDPSYTQVEKAFMKREGIKAKKVVAEMHSLRMDALYKLSIANHVRDKI- 839
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGV 611
F++PHN+DFRGR YP+ PY NHLGSD+ R +L F EG PLG GL WLKIHL NL G
Sbjct: 840 FWFPHNMDFRGRTYPLPPYFNHLGSDVTRALLLFAEGRPLGPKGLDWLKIHLVNL-TGLK 898
Query: 612 DKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPES 671
+ S +GR+ + E+ ++DI DSAD PL+GR+WW+ A++P+Q LA C+ ++ A RSP
Sbjct: 899 KQSSLDGRLEYAESIMEDILDSADHPLDGRKWWMNADEPWQALACCMEIANASRSPDHHK 958
Query: 672 TISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADAD 731
IS+ PVH DGSCNGLQHYAALGRD +GA +VNL+ P DVYSG+A +V E DA+
Sbjct: 959 FISYFPVHQDGSCNGLQHYAALGRDVIGATSVNLMPCALPQDVYSGVAKQVEEFRVRDAE 1018
Query: 732 KDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSK- 790
+ A++L + RK+VKQTVMT VYGVT G R QI+KRLKE I+D K
Sbjct: 1019 RG------LKIAQVLQGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLKE---IDDFPKD 1069
Query: 791 -LFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYH 849
++ A+ Y +L EMF R I WL E A++IA + V W TPLGLP++QPYH
Sbjct: 1070 YVWDASHYLVVQVFNSLKEMFTGTREIQEWLTESARLIAKSGRTVEWVTPLGLPIIQPYH 1129
Query: 850 QLGRHLIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGL 906
++ +++ ++Q L + D K +Q+ AFPPNF+HSLD +HMM+T++ C RAGL
Sbjct: 1130 RIRNQILKGNIQNLNIHISHDANEKPDSMKQKNAFPPNFIHSLDSTHMMLTSLHCHRAGL 1189
Query: 907 SFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDL----LASFQKQFPKLNFPP-- 960
+F VHD YWTHA VD MNR+ RE+FV L+ QPILE+L L + ++ P + P
Sbjct: 1190 TFVSVHDCYWTHAVTVDIMNRVCREQFVALHSQPILEELSWFLLQKYSRRPPVGSKPKKL 1249
Query: 961 ------------LPERGDFDLRDVLESPYFFN 980
+P+ GDFDL V +S YFF+
Sbjct: 1250 LEYYTLMKVLSSVPQTGDFDLEKVKDSVYFFS 1281
>UNIPROTKB|K7EKS3 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 EMBL:CH471242 EMBL:AC004449 HGNC:HGNC:9200
Gene3D:1.10.287.260 PANTHER:PTHR10102 Ensembl:ENST00000588649
Uniprot:K7EKS3
Length = 1245
Score = 1215 (432.8 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
Identities = 273/682 (40%), Positives = 384/682 (56%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 580 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLV-PVLYHVY-SFRNV----QQI 633
Query: 385 GVIECDP----LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
G+++ P L+ K E T + +PML PPL W + G P+ +MRT GA
Sbjct: 634 GILKPHPAYVQLLEKAAEPTLTFEAVD-VPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGA 692
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQED 497
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 693 TQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSE 752
Query: 498 VPLPEK---PNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + P++ E HS R + +LS+A+ ++D F+
Sbjct: 753 APQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWL 811
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 812 PHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKRE 870
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +S
Sbjct: 871 PLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVS 930
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H+PVH DGSCNGLQHYAALGRD +GAA+VNL D P DVYSG+AA+V R DA +
Sbjct: 931 HLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM 990
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGA 794
A++L + RK+VKQTVMT VYGVT G R QI+KRL+E + ++ A
Sbjct: 991 RV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEA 1043
Query: 795 ACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGR- 853
+ Y + +L EMF R+I WL E A++I+ V W TPLG+PV+QPY +
Sbjct: 1044 SHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKV 1103
Query: 854 HLIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAG 910
I +Q++ D K ++Q+ FPPNF+HSLD SHMM+TA+ C R GL+F
Sbjct: 1104 KQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVS 1163
Query: 911 VHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF---P---------KLNF 958
VHD YWTHA DV MN++ RE+FV L+ +PIL+DL K+F P K
Sbjct: 1164 VHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETL 1223
Query: 959 PPLPERGDFDLRDVLESPYFFN 980
+P+ G FDL V S YFF+
Sbjct: 1224 QAVPKPGAFDLEQVKRSTYFFS 1245
Score = 40 (19.1 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 135 TAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
T ++++R+++ + +A + ++Y LLA E P LP LG E LR+
Sbjct: 523 TFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVP-EPCLPRQYWEELGAPEALRE 579
Score = 37 (18.1 bits), Expect = 2.4e-125, Sum P(2) = 2.4e-125
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 174 PNLPYVKSLFLGWFEPLRDAIAKDQATAQDK---WKHM 208
P LP + G P R + A Q QD+ W H+
Sbjct: 38 PGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWGHV 75
>UNIPROTKB|O00411 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IDA;TAS]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=IDA;TAS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005759 "mitochondrial matrix" evidence=TAS] [GO:0006391
"transcription initiation from mitochondrial promoter"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0042645 "mitochondrial nucleoid" evidence=IDA]
Reactome:REACT_71 InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0003677
GO:GO:0042645 Reactome:REACT_1788 GO:GO:0003899 EMBL:AC004449
EMBL:U75370 IPI:IPI00298738 RefSeq:NP_005026.3 UniGene:Hs.254113
PDB:3SPA PDBsum:3SPA ProteinModelPortal:O00411 SMR:O00411
DIP:DIP-56412N IntAct:O00411 MINT:MINT-1142772 STRING:O00411
PhosphoSite:O00411 PaxDb:O00411 PRIDE:O00411
Ensembl:ENST00000215591 GeneID:5442 KEGG:hsa:5442 UCSC:uc002lpf.1
CTD:5442 GeneCards:GC19M000617 H-InvDB:HIX0027511
H-InvDB:HIX0059707 HGNC:HGNC:9200 HPA:HPA006366 MIM:601778
neXtProt:NX_O00411 PharmGKB:PA33522 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 InParanoid:O00411 KO:K10908
OMA:WARKGSF PhylomeDB:O00411 GenomeRNAi:5442 NextBio:21059
Bgee:O00411 CleanEx:HS_POLRMT Genevestigator:O00411
GermOnline:ENSG00000099821 GO:GO:0006391 Gene3D:1.10.287.260
PANTHER:PTHR10102 Uniprot:O00411
Length = 1230
Score = 1215 (432.8 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
Identities = 273/682 (40%), Positives = 384/682 (56%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLV-PVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDP----LVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
G+++ P L+ K E T + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVD-VPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGA 677
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQED 497
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 678 TQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSE 737
Query: 498 VPLPEK---PNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + P++ E HS R + +LS+A+ ++D F+
Sbjct: 738 APQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWL 796
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 797 PHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKRE 855
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +S
Sbjct: 856 PLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVS 915
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H+PVH DGSCNGLQHYAALGRD +GAA+VNL D P DVYSG+AA+V R DA +
Sbjct: 916 HLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM 975
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGA 794
A++L + RK+VKQTVMT VYGVT G R QI+KRL+E + ++ A
Sbjct: 976 RV------AQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEA 1028
Query: 795 ACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGR- 853
+ Y + +L EMF R+I WL E A++I+ V W TPLG+PV+QPY +
Sbjct: 1029 SHYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKV 1088
Query: 854 HLIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAG 910
I +Q++ D K ++Q+ FPPNF+HSLD SHMM+TA+ C R GL+F
Sbjct: 1089 KQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVS 1148
Query: 911 VHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF---P---------KLNF 958
VHD YWTHA DV MN++ RE+FV L+ +PIL+DL K+F P K
Sbjct: 1149 VHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETL 1208
Query: 959 PPLPERGDFDLRDVLESPYFFN 980
+P+ G FDL V S YFF+
Sbjct: 1209 QAVPKPGAFDLEQVKRSTYFFS 1230
Score = 40 (19.1 bits), Expect = 1.2e-125, Sum P(2) = 1.2e-125
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 135 TAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRD 192
T ++++R+++ + +A + ++Y LLA E P LP LG E LR+
Sbjct: 508 TFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVP-EPCLPRQYWEELGAPEALRE 564
Score = 37 (18.1 bits), Expect = 2.4e-125, Sum P(2) = 2.4e-125
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 174 PNLPYVKSLFLGWFEPLRDAIAKDQATAQDK---WKHM 208
P LP + G P R + A Q QD+ W H+
Sbjct: 23 PGLPGKEGTAGGVCGPRRSSSASPQEQDQDRRKDWGHV 60
>MGI|MGI:1915843 [details] [associations]
symbol:Polrmt "polymerase (RNA) mitochondrial (DNA
directed)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=ISO;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006390 "transcription from mitochondrial promoter"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0042645 "mitochondrial nucleoid" evidence=ISO]
InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489
PROSITE:PS00900 InterPro:IPR002885 MGI:MGI:1915843 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 GO:GO:0042645 PROSITE:PS51375
TIGRFAMs:TIGR00756 GO:GO:0003899 CTD:5442 eggNOG:COG5108
HOGENOM:HOG000044061 HOVERGEN:HBG078730 KO:K10908 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 EMBL:AK053356 EMBL:AK085666
IPI:IPI00308717 RefSeq:NP_766139.2 UniGene:Mm.39001
ProteinModelPortal:Q8BKF1 SMR:Q8BKF1 STRING:Q8BKF1
PhosphoSite:Q8BKF1 PaxDb:Q8BKF1 PRIDE:Q8BKF1
Ensembl:ENSMUST00000020580 GeneID:216151 KEGG:mmu:216151
GeneTree:ENSGT00390000008060 InParanoid:Q8BKF1 OrthoDB:EOG4CZBF9
NextBio:375012 Bgee:Q8BKF1 CleanEx:MM_POLRMT Genevestigator:Q8BKF1
GermOnline:ENSMUSG00000020329 Uniprot:Q8BKF1
Length = 1207
Score = 1197 (426.4 bits), Expect = 6.4e-125, Sum P(2) = 6.4e-125
Identities = 270/688 (39%), Positives = 380/688 (55%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW L+++G +L +LL++ + + + I P H SF R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSI-PVLYHVY-SFRSY----RQV 589
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGAR 440
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 590 GILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGTT 649
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA-GLVD-QEDV 498
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ G+ + +
Sbjct: 650 QHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSEA 709
Query: 499 PLPEK---PNTDDETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P E HS R + +LS+A+ ++ F+ P
Sbjct: 710 PRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLRHRV-FWLP 768
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL- 614
HN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G+ K
Sbjct: 769 HNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINLT--GLKKGD 826
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 827 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 886
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H+PVH DGSCNGLQHYAALGRD +GAA+VNL D P DVY +A +V E + DA +
Sbjct: 887 HLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEG- 945
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGA 794
A++L + RK+VKQTVMT VYGVT G R QI+KRL+E + ++ A
Sbjct: 946 -----LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEA 999
Query: 795 ACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH 854
+ Y + +L EMF + R+I WL E A +I+ V W TPLG+P++QPYH+ +
Sbjct: 1000 SHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYHRESKV 1059
Query: 855 LIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGV 911
++ LQ++ L D K +Q+ FPPNF+HSLD SHMM+TA+ C R GL F V
Sbjct: 1060 QVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSV 1119
Query: 912 HDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF-----------------P 954
HD +WTHA D+ MN + RE+FV L+ QPILEDL +K+F
Sbjct: 1120 HDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVT 1179
Query: 955 KLN--FPPLPERGDFDLRDVLESPYFFN 980
KL LP+ G FDL V+ S YFF+
Sbjct: 1180 KLQETLQSLPKTGTFDLGQVIRSTYFFS 1207
Score = 51 (23.0 bits), Expect = 6.4e-125, Sum P(2) = 6.4e-125
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 132 GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP--YVKSL 182
G+ +++K++Q+ + Q +Y LLA + ++AP LP Y +SL
Sbjct: 477 GLRVLNRHLVKQKQVTNHVQKLGQRYSQYLQLLAS--DTQVAPCLPREYWESL 527
>UNIPROTKB|E1BCZ0 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0042645 "mitochondrial nucleoid" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 OMA:WARKGSF
Gene3D:1.10.287.260 PANTHER:PTHR10102 GeneTree:ENSGT00390000008060
EMBL:DAAA02020222 IPI:IPI00698218 Ensembl:ENSBTAT00000020034
Uniprot:E1BCZ0
Length = 1221
Score = 1170 (416.9 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 271/694 (39%), Positives = 379/694 (54%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGD-SPPDIRPAFVHTLKSFTKEALKGRR 383
+PW LV++G +L ++L+ +Q P P + P H SF R+
Sbjct: 549 QPWPVSVLVQLGKQLAEVLVRA--VQMPSSLAAPRGPSTLIPVLYHVY-SFRSF----RQ 601
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGA 439
G+++ P + E +I +PML PPL W + G P+ +MR+ G
Sbjct: 602 IGILKPHPAFTQLQETAAERTLIFESTEVPMLCPPLPWTSPHSGAFLLSPTKMMRSLEGT 661
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQED 497
+Q + ++ P ++L AL LG+ WRVN R+L ++ ++ GC L +
Sbjct: 662 QQHQLLLERCPPAELHGALDALTQLGNCAWRVNGRVLDLVLDLFRDKGCPRLGVPAPPTE 721
Query: 498 VPLPEK----------PNTD--DETEIXXXXXXXXXXXXQNSEKHSQRCDIELKLSVARK 545
P P + P D+ E+ E S R D +LS+A+
Sbjct: 722 APRPPEGRQTPKGCLLPEASPADKAEMRRELARRLKVAR---EMQSLRADALYRLSLAQH 778
Query: 546 MKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLAN 605
+++ F+ PHN+DFRGR YP P+ NHLGSDL R +LEF +G PLG GL WLKIHL N
Sbjct: 779 LRNHV-FWLPHNMDFRGRTYPCSPHFNHLGSDLARALLEFAQGRPLGPHGLDWLKIHLIN 837
Query: 606 LYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALR 665
L G + S + R + + ++DI DSA+RP+ GR+WW+ A++P+Q LA C+ +++ +
Sbjct: 838 L-TGLKKRESLQTRRDYADAVMEDILDSAERPMTGRKWWMEADEPWQTLACCMEIAQVVH 896
Query: 666 SPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEI 725
SP P + ISH PVH DGSCNGLQHYAALGRD GA +VNL D P DVYS +AA+V
Sbjct: 897 SPDPTTYISHFPVHQDGSCNGLQHYAALGRDSTGATSVNLSPSDLPQDVYSEVAAQVEVF 956
Query: 726 MRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAI 785
R DA + A++L + RK+VKQTVMT VYGVT G R QI+KRL+E +
Sbjct: 957 RRQDAKQG------VRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRE---L 1007
Query: 786 EDDSKLF--GAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLP 843
ED + F A+ Y + +L EMF RSI WL E A++I+ AV W TPLG+P
Sbjct: 1008 EDFPQEFVWEASHYLVRQVFNSLQEMFSGTRSIQRWLTESARLISLTGSAVEWITPLGVP 1067
Query: 844 VVQPYHQLGRHLIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 900
++QPYH+ + +I+ LQ+L D K +Q+ FPPNF+HSLD +HMM+TA+
Sbjct: 1068 IIQPYHRDSKVMIKGGLQSLTFSSSVDTNQKPNTLKQKNGFPPNFIHSLDSTHMMLTALY 1127
Query: 901 CKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFP------ 954
C R GL+F VHD +WTHA DV MN++ RE+FV L+ QPIL DL K+F
Sbjct: 1128 CYRKGLTFVSVHDCFWTHAADVGVMNQVCREQFVRLHSQPILHDLSRFLIKRFCSDSRTS 1187
Query: 955 --------KLNFPPLPERGDFDLRDVLESPYFFN 980
K +P G FDL V S +FF+
Sbjct: 1188 KSMWVSRLKDTLLSVPPTGTFDLDQVKRSTFFFS 1221
Score = 51 (23.0 bits), Expect = 4.5e-122, Sum P(2) = 4.5e-122
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 140 MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLP 177
+LKR++++ + E EQ EY LLA Q P LP
Sbjct: 497 VLKRKRLRNQVEELEQRYFEYLHLLASDT-QVAEPCLP 533
>FB|FBgn0261938 [details] [associations]
symbol:mtRNApol "mitochondrial RNA polymerase" species:7227
"Drosophila melanogaster" [GO:0005739 "mitochondrion" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 EMBL:AE014134 GO:GO:0003677 GO:GO:0006351
PROSITE:PS51375 TIGRFAMs:TIGR00756 GO:GO:0003899 KO:K10908
OMA:WARKGSF Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 HSSP:P00573 FlyBase:FBgn0261938
EMBL:BT011381 RefSeq:NP_608565.1 UniGene:Dm.12209 SMR:Q9VPW4
STRING:Q9VPW4 EnsemblMetazoa:FBtr0077989 EnsemblMetazoa:FBtr0332273
GeneID:33285 KEGG:dme:Dmel_CG4644 CTD:33285 InParanoid:Q9VPW4
GenomeRNAi:33285 NextBio:782857 Uniprot:Q9VPW4
Length = 1369
Score = 1127 (401.8 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 309/885 (34%), Positives = 450/885 (50%)
Query: 103 ELIDQFNEKGVSI--LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWE-----Q 155
EL+D NE + + D G A+ L R Q+KIE + +
Sbjct: 469 ELLDHLNEHVIPVGAKKEPGKADYAIMNSKRGYTAAQLEQLAREQLKIELDGSITIKSIE 528
Query: 156 AAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQAT--AQDKWK-H--MTY 210
+KE+ + ++ C + L K L W + + AI +D T AQ ++K H M Y
Sbjct: 529 KSKEFAN--SEKCRELL-------KELEDTWRKQISAAIVRDLNTLRAQVRFKPHGFMNY 579
Query: 211 APYFNNLPADMMAVITMHKLVGLLM-TNAGEVRVVQAACQIGEAIENEARIQSFFKSTKK 269
Y L A A I + +L L + V Q ++G+ ++ +I+ KK
Sbjct: 580 YTYLKTLDASHFADILIKELYKLAEGSETFSPTVGQLYKELGQKVQQRYQIEQ-----KK 634
Query: 270 KNATDNNLEGDSEPLTNDPXXXXXXXXXXXXRVTSLIKKQKLQQVRGIVKGHVDSKPWGQ 329
N T LE E ++ R ++ +Q + PW
Sbjct: 635 HNGT---LEKIGEIYSSYCELWGSGMSQDNTR--QAWQRLVYEQRESGPSMDLLEVPWPS 689
Query: 330 DALVKVGCRLIQLLMET----AYI--QPPVDQLGDSPPDIRPAFVHTLKS---FTKEALK 380
+ L VG L +LM A+I Q + P ++ PAF ++ F KE +K
Sbjct: 690 NVLTGVGRFLYNILMRDIKIDAHIMRQKSKSKAAAQPQNLLPAFYTLFRNQGRFVKEEVK 749
Query: 381 GRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVMRT 436
P++ + L + R + + +PML PP W + GG+ + ++R
Sbjct: 750 PH--------PVLSR-LFRASRQQTLTFDSNLVPMLCPPQPWSTPHNGGYLLNKTELIRL 800
Query: 437 -HGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQ 495
H A QQ + I + L P +L+ L S WRVN ++L VI +++ +GG + V Q
Sbjct: 801 PHQAIQQWDRIMASNPQHLYPALDSLNQLASVPWRVNTQLLDVIIKVFQNGGDVKLDVPQ 860
Query: 496 EDV---PLPEKPNTDDETEIXXXXXXXXXXXXQ------NSEKHSQRCDIELKLSVARKM 546
PLP P D E + +E +S CD +LS+A+
Sbjct: 861 PPSSLPPLPTLPAKDAEGNATSSEDRAKQFRDKLGHRRKQAEMYSLWCDALYRLSLAQHY 920
Query: 547 KDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANL 606
+D+ F+ PHN+DFRGR YP+ P+LNHLGSDL R +L F++ PLG GL WLK+H NL
Sbjct: 921 RDKV-FWLPHNMDFRGRVYPVPPHLNHLGSDLARSMLIFDQAQPLGVDGLSWLKLHCINL 979
Query: 607 YAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRS 666
G + S R+ + E + DI DSAD PL GR WW +++P+Q LA C+ ++ R
Sbjct: 980 -TGLKKRDSVRERLLYAEEIMPDILDSADNPLTGRMWWSKSDEPWQTLACCMEIANVHRC 1038
Query: 667 PSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIM 726
P P + +S P+H DGSCNGLQHYAALGRD+ GA +VNL P DVYS +AA V +
Sbjct: 1039 PDPAAYLSRFPIHQDGSCNGLQHYAALGRDEAGARSVNLAPSAIPQDVYSAVAALVEKSR 1098
Query: 727 RADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIE 786
+ADA A L V RK++KQTVMT+VYGVT GAR QI ++LK+ I+
Sbjct: 1099 KADAQNG------LHVAEALAGFVRRKVIKQTVMTTVYGVTRYGARLQIARQLKD---ID 1149
Query: 787 DDSK--LFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASE-NQAVRWTTPLGLP 843
D K ++ A+ Y T +L EMF + R I W ECA++I+ +Q V W TPLGLP
Sbjct: 1150 DFPKDWVWPASTYLTTKTFESLREMFTSTREIQDWFTECARLISGVCSQNVEWVTPLGLP 1209
Query: 844 VVQPYH-QLGRHLIRTSLQTLA-LQRET-DKVMVKRQRTAFPPNFVHSLDGSHMMMTAVA 900
VVQPY+ Q +H R+ + A + + ++ + +Q+ AFPPNF+HSLD SHMM+T++
Sbjct: 1210 VVQPYNRQEMKHSPRSGFKVSANMPMDLYERPNILKQKNAFPPNFIHSLDSSHMMLTSLH 1269
Query: 901 CKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDL 945
C+R G++F VHD +WTHA V ++NR+ RE+FV L+ QPILE L
Sbjct: 1270 CERQGITFVSVHDCFWTHANTVPELNRMCREQFVALHSQPILEQL 1314
Score = 79 (32.9 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
Identities = 13/20 (65%), Positives = 19/20 (95%)
Query: 961 LPERGDFDLRDVLESPYFFN 980
+P++GDFDLR+VL+S YFF+
Sbjct: 1350 MPQKGDFDLRNVLDSVYFFS 1369
>UNIPROTKB|E1BZ13 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042645
"mitochondrial nucleoid" evidence=IEA] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
InterPro:IPR002885 GO:GO:0003677 GO:GO:0006351 GO:GO:0042645
PROSITE:PS51375 GO:GO:0003899 OMA:WARKGSF Gene3D:1.10.287.260
PANTHER:PTHR10102 GeneTree:ENSGT00390000008060 EMBL:AADN02066671
EMBL:AADN02066672 EMBL:AADN02066673 IPI:IPI00572283
Ensembl:ENSGALT00000002098 Uniprot:E1BZ13
Length = 1018
Score = 1155 (411.6 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 268/691 (38%), Positives = 389/691 (56%)
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDS-PPDIRPAFVHTLKSFTKEALKGRRYG 385
W L+++G L+++L+ ++ P + L P + P H + SF + G
Sbjct: 351 WPYVLLMRLGMYLLEILVHA--VKVPRNTLNPRLPSKLIPVLYH-IYSFRSSW----QVG 403
Query: 386 VIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGARQ 441
+I+ P+ + + M+ +PML PP+ W + G + +MR GA Q
Sbjct: 404 LIKPHPIFSQIVSDAAETMLTFNSSAIPMLCPPVPWTSPHFGAFVLSDTKLMRYVDGAIQ 463
Query: 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLP 501
++ + P+ L PV AL+ LG+ W++N+ +L +I ++ G ++ D+P P
Sbjct: 464 HQQLLDQCPQVNLHPVLDALNQLGNCAWKINQPVLDIIISIFNDKGN-----EKLDIPPP 518
Query: 502 ----EKPNTDDETEIXXXXXXXXXXXX---QNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
KP + + +E HS R D KLS+A ++D+ F++
Sbjct: 519 VSEAPKPPVSPSSSSALHKSQKHELLLCKKKAAEMHSLRMDALYKLSIANYVRDKV-FWF 577
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP PY NHLG+D+ R +L F EG PLG GL WLKIHL NL G K
Sbjct: 578 PHNMDFRGRTYPCPPYFNHLGNDVTRAILLFAEGRPLGPKGLDWLKIHLINL-TGLKKKN 636
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
+ + R+ + +++I DSAD PL GR+WW+ ++P+Q LA C+ +++A RSP P + IS
Sbjct: 637 ALQERLDYANEIMEEILDSADHPLTGRKWWMNTDEPWQVLACCMEIAKASRSPDPAAFIS 696
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H PVH DGSCNGLQHYAALGRD +GA +VNL+ + P DVYS +A +V E + DA++
Sbjct: 697 HFPVHQDGSCNGLQHYAALGRDLIGAISVNLMPCNVPQDVYSAVAQQVEEFRKKDAEEG- 755
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIE-DDSKLFG 793
A++L + RK+VKQTVMT VYGVT G R Q++KRLKE IE + L+
Sbjct: 756 -----LRIAQVLEGFIGRKVVKQTVMTVVYGVTRYGGRLQMEKRLKE---IEFPEEYLWE 807
Query: 794 AACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGR 853
A+ Y K + EMF A R I +WL E AK+IA + V W TPLGLP+VQPY+++
Sbjct: 808 ASHYLVKQVFNGIKEMFSATRDIQNWLTESAKLIAQSGRTVEWVTPLGLPIVQPYYRIRP 867
Query: 854 ---HLIRTSLQTLALQ--RE-TDKVMVK----RQRTAFPPNFVHSLDGSHMMMTAVACKR 903
H+ ++ RE + + + K +Q+ AFPPNF+HSLD +HMM+TA+ C R
Sbjct: 868 TVPHIGHVGMEQAGASHLRELSSQPLTKPDTVKQKNAFPPNFIHSLDSTHMMLTALHCFR 927
Query: 904 AGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF--P------- 954
GL+F VHD YWTHA VD MN I R++FV L+ Q ILEDL + + P
Sbjct: 928 QGLTFVSVHDCYWTHALTVDIMNEICRQQFVALHSQKILEDLSKFMLENYCSPDRESRAL 987
Query: 955 ---KL--NFPPLPERGDFDLRDVLESPYFFN 980
KL +P+ G+F+L V++S YFF+
Sbjct: 988 WQKKLMEQLSNVPKTGEFNLNKVIDSTYFFS 1018
Score = 39 (18.8 bits), Expect = 3.2e-119, Sum P(2) = 3.2e-119
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 138 YYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
Y L + ++ + E +EY + L E K + PYV + LG +
Sbjct: 313 YIHLLAKDSQVGSPPREYLPREYWEKLVAEPELKRDCSWPYVLLMRLGMY 362
>GENEDB_PFALCIPARUM|PF11_0264 [details] [associations]
symbol:PF11_0264 "DNA-dependent RNA polymerase"
species:5833 "Plasmodium falciparum" [GO:0005739 "mitochondrion"
evidence=ISS] InterPro:IPR002092 InterPro:IPR024075 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739 GO:GO:0003677
GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 546 (197.3 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 124/372 (33%), Positives = 196/372 (52%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVI---EC--DPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
P F+H S+ + YGVI EC + L+ + H+ + Y+PM+ P W
Sbjct: 875 PVFIH---SYVWK--NNNWYGVIHMRECCANYLLNNAINS---HIPLNYLPMICKPKRWE 926
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
+ GG L + +R + + + L + + +G+ W++NK IL I
Sbjct: 927 NFE-GGMLLLKNSFIRCN----IKPLFNLNV-CNLNRIKNIVSEIGNVGWKINKEILHYI 980
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNTDDET--EIXXXXXXXXXXXXQNSEKHSQRCDIE 537
+ + G + + ++ LP+ N ++ EI N S+R
Sbjct: 981 EYAYIHGITIGKIPLYKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFL 1040
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
KL+VA+ KD + Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F E +G GL
Sbjct: 1041 QKLAVAKTFKDNDIIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLF 1100
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
WLKIHLAN + G DKLS++ R+ + + ++++I +P + +W AE P+Q LA
Sbjct: 1101 WLKIHLANTF--GKDKLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVA 1158
Query: 658 INLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSG 717
I+L AL SP+ S IP+ DG+CNGLQHYAALG+DK G AVN++ D+P D+YS
Sbjct: 1159 IDLKNALESPNASKYKSSIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSV 1218
Query: 718 IAARVLEIMRAD 729
+ V+ ++ D
Sbjct: 1219 VLDIVISKIKND 1230
Score = 476 (172.6 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 97/234 (41%), Positives = 140/234 (59%)
Query: 752 RKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAAC-YAAKTTLTALGEMF 810
RK+VKQT+MT YGVT IGA++Q+K +++ E D + Y A ++ E+F
Sbjct: 1298 RKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIF 1357
Query: 811 EAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLA-LQRET 869
+ A I W +KV N + W +P+GLP QPY R L+ T LQ+++ + +
Sbjct: 1358 KRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKN 1417
Query: 870 DKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACK-RAGLSFAGVHDSYWTHACDVDQMNRI 928
++ +QR FPPNFVHSLD SH+MMTA + SFA VHDSYW HAC+VD MN+
Sbjct: 1418 SQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQNNFSFAAVHDSYWAHACNVDIMNQF 1477
Query: 929 LREKFVELYEQPILEDLLASFQKQFPKL--NFPPLPERGDFDLRDVLESPYFFN 980
+RE F+ LY +PILE++ +F+ + K P PE+G+ D+ V +S YFF+
Sbjct: 1478 IRESFITLYNEPILENIYNNFRIRLGKFATKIPSSPEQGELDISMVKDSLYFFS 1531
Score = 69 (29.3 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 17/85 (20%), Positives = 44/85 (51%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
RRQ+ IE ++++A +E ++ ++++ + K + + ++L W L I + +
Sbjct: 410 RRQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNWISELEKRIILYKEKNK 469
Query: 203 DKWKHMTYAPYFNNLPADMMAVITM 227
+K K + + ++ ++A IT+
Sbjct: 470 NKKKKKIFPDFIDD---KLLATITV 491
Score = 42 (19.8 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDS 281
A +IGE I NE Q K N N S
Sbjct: 531 AIKIGEEINNELNFQLLEKKNHLYNYMKKNKNNSS 565
Score = 37 (18.1 bits), Expect = 3.2e-95, Sum P(4) = 3.2e-95
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 255 ENEARIQSFFKSTKKKNATD 274
+NE + F T K NA D
Sbjct: 713 KNEYKYYLFLHKTAKNNAED 732
>UNIPROTKB|Q8IIB0 [details] [associations]
symbol:PF11_0264 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005739
"mitochondrion" evidence=ISS] InterPro:IPR002092 InterPro:IPR024075
Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900 GO:GO:0005739
GO:GO:0003677 GO:GO:0006351 EMBL:AE014186 GO:GO:0003899 KO:K10908
Gene3D:1.10.287.260 PANTHER:PTHR10102 RefSeq:XP_001347935.1
HSSP:P00573 ProteinModelPortal:Q8IIB0
EnsemblProtists:PF11_0264:mRNA GeneID:810811 KEGG:pfa:PF11_0264
EuPathDB:PlasmoDB:PF3D7_1125300 HOGENOM:HOG000282367
ProtClustDB:CLSZ2432452 Uniprot:Q8IIB0
Length = 1531
Score = 546 (197.3 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 124/372 (33%), Positives = 196/372 (52%)
Query: 365 PAFVHTLKSFTKEALKGRRYGVI---EC--DPLVRKGLEKTGRHMIIPYMPMLVPPLNWR 419
P F+H S+ + YGVI EC + L+ + H+ + Y+PM+ P W
Sbjct: 875 PVFIH---SYVWK--NNNWYGVIHMRECCANYLLNNAINS---HIPLNYLPMICKPKRWE 926
Query: 420 GYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI 479
+ GG L + +R + + + L + + +G+ W++NK IL I
Sbjct: 927 NFE-GGMLLLKNSFIRCN----IKPLFNLNV-CNLNRIKNIVSEIGNVGWKINKEILHYI 980
Query: 480 DRMWASGGCLAGLVDQEDVPLPEKPNTDDET--EIXXXXXXXXXXXXQNSEKHSQRCDIE 537
+ + G + + ++ LP+ N ++ EI N S+R
Sbjct: 981 EYAYIHGITIGKIPLYKNYTLPKYINLKEQNNEEIKKYLLLKEEINRLNKCLISERPTFL 1040
Query: 538 LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLH 597
KL+VA+ KD + Y+PHN+DFRGR YP+ P+L+H+ D+CR ++ F E +G GL
Sbjct: 1041 QKLAVAKTFKDNDIIYFPHNIDFRGRMYPLSPHLHHMSDDICRSLITFAEQKEIGNKGLF 1100
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATC 657
WLKIHLAN + G DKLS++ R+ + + ++++I +P + +W AE P+Q LA
Sbjct: 1101 WLKIHLANTF--GKDKLSFQKRIQWVDQNINNIKKLTQQPFDNIEFWNMAEKPWQALAVA 1158
Query: 658 INLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSG 717
I+L AL SP+ S IP+ DG+CNGLQHYAALG+DK G AVN++ D+P D+YS
Sbjct: 1159 IDLKNALESPNASKYKSSIPIQQDGTCNGLQHYAALGKDKYGGKAVNIIPSDEPQDIYSV 1218
Query: 718 IAARVLEIMRAD 729
+ V+ ++ D
Sbjct: 1219 VLDIVISKIKND 1230
Score = 476 (172.6 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 97/234 (41%), Positives = 140/234 (59%)
Query: 752 RKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAAC-YAAKTTLTALGEMF 810
RK+VKQT+MT YGVT IGA++Q+K +++ E D + Y A ++ E+F
Sbjct: 1298 RKVVKQTIMTICYGVTSIGAKNQVKGKIQTMIGKELDKNIINKLSQYIANYIFESISEIF 1357
Query: 811 EAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLA-LQRET 869
+ A I W +KV N + W +P+GLP QPY R L+ T LQ+++ + +
Sbjct: 1358 KRAMIIKKWFNNLSKVTNELNIPITWISPIGLPCEQPYRLGNRILVNTPLQSISVISYKN 1417
Query: 870 DKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACK-RAGLSFAGVHDSYWTHACDVDQMNRI 928
++ +QR FPPNFVHSLD SH+MMTA + SFA VHDSYW HAC+VD MN+
Sbjct: 1418 SQLHKNKQRLGFPPNFVHSLDASHLMMTAEKMVIQNNFSFAAVHDSYWAHACNVDIMNQF 1477
Query: 929 LREKFVELYEQPILEDLLASFQKQFPKL--NFPPLPERGDFDLRDVLESPYFFN 980
+RE F+ LY +PILE++ +F+ + K P PE+G+ D+ V +S YFF+
Sbjct: 1478 IRESFITLYNEPILENIYNNFRIRLGKFATKIPSSPEQGELDISMVKDSLYFFS 1531
Score = 69 (29.3 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 17/85 (20%), Positives = 44/85 (51%)
Query: 143 RRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ 202
RRQ+ IE ++++A +E ++ ++++ + K + + ++L W L I + +
Sbjct: 410 RRQMLIERSSYKKAIEEAEEFVSNLHDLKKITEIQGLCKIYLNWISELEKRIILYKEKNK 469
Query: 203 DKWKHMTYAPYFNNLPADMMAVITM 227
+K K + + ++ ++A IT+
Sbjct: 470 NKKKKKIFPDFIDD---KLLATITV 491
Score = 42 (19.8 bits), Expect = 9.6e-96, Sum P(4) = 9.6e-96
Identities = 12/35 (34%), Positives = 13/35 (37%)
Query: 247 ACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDS 281
A +IGE I NE Q K N N S
Sbjct: 531 AIKIGEEINNELNFQLLEKKNHLYNYMKKNKNNSS 565
Score = 37 (18.1 bits), Expect = 3.2e-95, Sum P(4) = 3.2e-95
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 255 ENEARIQSFFKSTKKKNATD 274
+NE + F T K NA D
Sbjct: 713 KNEYKYYLFLHKTAKNNAED 732
>WB|WBGene00013680 [details] [associations]
symbol:Y105E8A.23 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0007413 "axonal fasciculation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] InterPro:IPR002092
InterPro:IPR024075 Pfam:PF00940 PROSITE:PS00489 PROSITE:PS00900
GO:GO:0006898 GO:GO:0040010 GO:GO:0003677 GO:GO:0000003
GO:GO:0006351 GO:GO:0007413 GO:GO:0003899 EMBL:AL132876
eggNOG:COG5108 KO:K10908 Gene3D:1.10.287.260 PANTHER:PTHR10102
GeneTree:ENSGT00390000008060 RefSeq:NP_001122532.1 UniGene:Cel.5359
ProteinModelPortal:A5PEY3 PaxDb:A5PEY3 EnsemblMetazoa:Y105E8A.23b
GeneID:173317 KEGG:cel:CELE_Y105E8A.23 UCSC:Y105E8A.23a CTD:173317
WormBase:Y105E8A.23b HOGENOM:HOG000285932 InParanoid:A5PEY3
OMA:FWTHANS NextBio:879131 ArrayExpress:A5PEY3 Uniprot:A5PEY3
Length = 1156
Score = 845 (302.5 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
Identities = 196/489 (40%), Positives = 279/489 (57%)
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+E +S C ++ ++ +A + + ++PHN+DFRGR YP+ PYL+H+G D+ R +L+F
Sbjct: 681 NESNSLWCWMQYRVVLADHFRGQT-LFFPHNMDFRGRVYPLSPYLSHMGDDVNRCILKFA 739
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
+ LG+ G WLK+H NL G + + S R+ E + + DSA PL G++WW+
Sbjct: 740 KSQKLGEKGFDWLKLHCINL-TGTMKRSSVADRMVEAERLIPLMLDSARDPLNGQKWWMS 798
Query: 647 AEDPFQCLATCINLSEALRSPSPESTI-SHIPVHMDGSCNGLQHYAALGRDKLGAAAVNL 705
+++P+Q LA C+ + A R S + S +P+H DGSCNGLQHYAALGRD G VNL
Sbjct: 799 SDEPWQTLAACVEIENATRYGSDVALFPSQLPIHQDGSCNGLQHYAALGRDNEGGVQVNL 858
Query: 706 VGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQ-VDRKLVKQTVMTSVY 764
D P DVYS +A RV + + D + A R + Q V RK++KQTVMT+VY
Sbjct: 859 TQSDTPNDVYSDVAQRVEQKRQQDEQSNGEDCDVARKLREALPQNVPRKVIKQTVMTTVY 918
Query: 765 GVTYIGARDQIKKRLKERCAIEDDSKLFG-------------AACYA---AKTTLTALGE 808
GVT GA QIK++LK +D+ +F AA +A A+ T +L +
Sbjct: 919 GVTMYGAVLQIKRQLKAMDIPGEDAAIFARYLARKTFASLNDAAIFARYLARKTFASLND 978
Query: 809 MFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRE 868
F ++ ++ W AK + + V W TPLGLPVVQPY +L + R LA
Sbjct: 979 AFTSSMALKDWFRLIAKGSSDLMKTVEWITPLGLPVVQPYCKL---VERKGKLILA---- 1031
Query: 869 TDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRI 928
V +K Q AFPPNFVHSLD +HMM+T++ C + G++FA VHD +WTHA VDQMN I
Sbjct: 1032 --PVPMK-QVDAFPPNFVHSLDSTHMMLTSLNCAQRGITFAAVHDCFWTHANSVDQMNEI 1088
Query: 929 LREKFVELYEQPILEDLLASFQKQF--PKLNFPPLPER---------------GDFDLRD 971
R++FV L+ QPI+E F+K + PK+ LPE+ GD D+
Sbjct: 1089 CRQQFVSLHSQPIVEQCSEWFKKTYLTPKMA-KILPEKDFQKYSEIFTANIEHGDLDIEK 1147
Query: 972 VLESPYFFN 980
V +S YFF+
Sbjct: 1148 VKDSVYFFS 1156
Score = 126 (49.4 bits), Expect = 1.1e-95, Sum P(2) = 1.1e-95
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSY------VMRTHGARQQRET-IKMTPRSQLEPVFQAL 461
+PM+VPP W GG + S +M R E ++T ++Q PVF AL
Sbjct: 538 LPMIVPPRPWIDRGTGGPLYTTSQHEIIRKMMEFRAVRLNEEMRARITSQAQARPVFDAL 597
Query: 462 DTLGSTKWRVNKRILGVI-DRMWASGGCLA-GLVDQEDVPL 500
+ LGST W +N+ +L V+ D SG + GL+++ ++P+
Sbjct: 598 NQLGSTPWVINEPMLDVLKDVFGRSGNSESRGLLEKLEIPM 638
>CGD|CAL0002343 [details] [associations]
symbol:orf19.6499 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 447 (162.4 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 117/327 (35%), Positives = 170/327 (51%)
Query: 527 SEKHSQRCDIELKLSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+E S R E+ +A E G Y+ ++LDFRGR YP P L H G DL R +
Sbjct: 630 TELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFM 687
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F PLG G +W+K LA+L+ G + L + + EN+ D+I DSA P+ G++WW
Sbjct: 688 FWYSEPLGPNGFYWIKYQLASLF-GQKNCLEF-----YEENY-DNIIDSARNPMTGKKWW 740
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTIS----HIPVHMDGSCNGLQHYAALGRDKLGA 700
+ A+ PF LA C + + L I +P+H DGSCNGLQHYA L D+ G
Sbjct: 741 MKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGG 800
Query: 701 AAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASC----ARLLINQVDRKLVK 756
AAVNL+ + DVY+ +VLEI++ ++D + + A+ + ++RKLVK
Sbjct: 801 AAVNLIRSETKQDVYT----KVLEIVKKKIEQDISEQNLGTVNLETAKFFLPILNRKLVK 856
Query: 757 QTVMTSVYGVTYIGARDQIKKRLKE----------RCAIEDDS--KLFGA----ACYAAK 800
+ VMT+VYGVT GA QI + +KE + +++ KL Y AK
Sbjct: 857 RPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAK 916
Query: 801 TTLTALGEMFEAARSIMSWLGECAKVI 827
L ++ E+F A+ I WL + K I
Sbjct: 917 KILDSIDELFVHAKQIEKWLLQNTKRI 943
Score = 231 (86.4 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 836 WTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQR--TAFPPNFVHSLDGSH 893
W +P GLPV+Q Y ++ ++ + R++ PNF+HSLD +H
Sbjct: 978 WISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAH 1037
Query: 894 MMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQ 952
+ MT + +AGL+F+ +HDSYWTH +V+++++ILRE+FVELY L+ + F Q
Sbjct: 1038 LFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQ 1096
Score = 148 (57.2 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 40/145 (27%), Positives = 68/145 (46%)
Query: 366 AFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE--KTGRHMIIPYMPMLVPPLNWRGYNR 423
AF K T K + Y +++ P + L+ K G H+ Y+PML PP W
Sbjct: 491 AFCKETKRITNT--KNKTYIIVKMHPYIELKLQSLKLGTHL--HYLPMLHPPKPWVNPQS 546
Query: 424 GGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
GG+ + + + T+ + Q + R QL+ + LD +G+T W +N +L V +++
Sbjct: 547 GGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM 606
Query: 484 AS-GGCLAGLVDQEDVPLPEKPNTD 507
+ G L+ D LP+K T+
Sbjct: 607 GNPDGFLSIPPSVPDETLPQKTKTE 631
Score = 64 (27.6 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 956 LNFPPLPERGDFDLRDVLESPYFFN 980
+N PP +G+ D+ VL+SPYFF+
Sbjct: 1197 INVPP---KGNLDISKVLDSPYFFS 1218
Score = 46 (21.3 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 226 TMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLT 285
T+HKL + +T + + I E + +I+ + K+ T N++ L
Sbjct: 899 TLHKLKSVQLTQTSYL-AKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLN 957
Query: 286 NDP 288
N+P
Sbjct: 958 NNP 960
Score = 42 (19.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 23/99 (23%), Positives = 41/99 (41%)
Query: 603 LANLYAGGVDKLSYEGRVA---FTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
+ +LY+ V K S + R+ TE L ++ S D ++ L E+ Q T I
Sbjct: 164 ILHLYS--VSKQSGKSRIITNPITEYFLHNL-KSFDTDIQEFANELTQEESLQKALTEIC 220
Query: 660 LSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKL 698
S+ + P +++I P H L Y + + +
Sbjct: 221 FSKQISLPVTKTSIEREPYHSVSIDQYLDEYGGIDYENI 259
Score = 37 (18.1 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 6 ARQSSTRNFKFSPSK-------VSQTTNFLKKITSLET 36
A + ++FKF S+ ++ TT ++KI +ET
Sbjct: 323 ASKQFEKSFKFGMSEKNLIHKWITDTTEQIEKILEIET 360
>UNIPROTKB|Q5AH39 [details] [associations]
symbol:CaO19.13852 "DNA-directed RNA polymerase"
species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR002092 Pfam:PF00940
PROSITE:PS00489 PROSITE:PS00900 CGD:CAL0002343 GO:GO:0003677
GO:GO:0006351 EMBL:AACQ01000020 EMBL:AACQ01000016 GO:GO:0003899
eggNOG:COG5108 KO:K10908 PANTHER:PTHR10102 RefSeq:XP_720824.1
RefSeq:XP_721337.1 RefSeq:XP_888836.1 ProteinModelPortal:Q5AH39
GeneID:3636994 GeneID:3637444 GeneID:3703847 KEGG:cal:CaO19.13852
KEGG:cal:CaO19.6499 KEGG:cal:CaO19_6499 Uniprot:Q5AH39
Length = 1218
Score = 447 (162.4 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 117/327 (35%), Positives = 170/327 (51%)
Query: 527 SEKHSQRCDIELKLSVARKMKDEEG--FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+E S R E+ +A E G Y+ ++LDFRGR YP P L H G DL R +
Sbjct: 630 TELKSLRITFEIMNKLANAF-GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFM 687
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F PLG G +W+K LA+L+ G + L + + EN+ D+I DSA P+ G++WW
Sbjct: 688 FWYSEPLGPNGFYWIKYQLASLF-GQKNCLEF-----YEENY-DNIIDSARNPMTGKKWW 740
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTIS----HIPVHMDGSCNGLQHYAALGRDKLGA 700
+ A+ PF LA C + + L I +P+H DGSCNGLQHYA L D+ G
Sbjct: 741 MKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGG 800
Query: 701 AAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASC----ARLLINQVDRKLVK 756
AAVNL+ + DVY+ +VLEI++ ++D + + A+ + ++RKLVK
Sbjct: 801 AAVNLIRSETKQDVYT----KVLEIVKKKIEQDISEQNLGTVNLETAKFFLPILNRKLVK 856
Query: 757 QTVMTSVYGVTYIGARDQIKKRLKE----------RCAIEDDS--KLFGA----ACYAAK 800
+ VMT+VYGVT GA QI + +KE + +++ KL Y AK
Sbjct: 857 RPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAK 916
Query: 801 TTLTALGEMFEAARSIMSWLGECAKVI 827
L ++ E+F A+ I WL + K I
Sbjct: 917 KILDSIDELFVHAKQIEKWLLQNTKRI 943
Score = 231 (86.4 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 836 WTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQR--TAFPPNFVHSLDGSH 893
W +P GLPV+Q Y ++ ++ + R++ PNF+HSLD +H
Sbjct: 978 WISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAH 1037
Query: 894 MMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQ 952
+ MT + +AGL+F+ +HDSYWTH +V+++++ILRE+FVELY L+ + F Q
Sbjct: 1038 LFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQ 1096
Score = 148 (57.2 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 40/145 (27%), Positives = 68/145 (46%)
Query: 366 AFVHTLKSFTKEALKGRRYGVIECDPLVRKGLE--KTGRHMIIPYMPMLVPPLNWRGYNR 423
AF K T K + Y +++ P + L+ K G H+ Y+PML PP W
Sbjct: 491 AFCKETKRITNT--KNKTYIIVKMHPYIELKLQSLKLGTHL--HYLPMLHPPKPWVNPQS 546
Query: 424 GGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMW 483
GG+ + + + T+ + Q + R QL+ + LD +G+T W +N +L V +++
Sbjct: 547 GGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM 606
Query: 484 AS-GGCLAGLVDQEDVPLPEKPNTD 507
+ G L+ D LP+K T+
Sbjct: 607 GNPDGFLSIPPSVPDETLPQKTKTE 631
Score = 64 (27.6 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 956 LNFPPLPERGDFDLRDVLESPYFFN 980
+N PP +G+ D+ VL+SPYFF+
Sbjct: 1197 INVPP---KGNLDISKVLDSPYFFS 1218
Score = 46 (21.3 bits), Expect = 2.2e-15, Sum P(4) = 2.2e-15
Identities = 14/63 (22%), Positives = 27/63 (42%)
Query: 226 TMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLT 285
T+HKL + +T + + I E + +I+ + K+ T N++ L
Sbjct: 899 TLHKLKSVQLTQTSYL-AKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLN 957
Query: 286 NDP 288
N+P
Sbjct: 958 NNP 960
Score = 42 (19.8 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 23/99 (23%), Positives = 41/99 (41%)
Query: 603 LANLYAGGVDKLSYEGRVA---FTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN 659
+ +LY+ V K S + R+ TE L ++ S D ++ L E+ Q T I
Sbjct: 164 ILHLYS--VSKQSGKSRIITNPITEYFLHNL-KSFDTDIQEFANELTQEESLQKALTEIC 220
Query: 660 LSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKL 698
S+ + P +++I P H L Y + + +
Sbjct: 221 FSKQISLPVTKTSIEREPYHSVSIDQYLDEYGGIDYENI 259
Score = 37 (18.1 bits), Expect = 1.9e-69, Sum P(5) = 1.9e-69
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 6 ARQSSTRNFKFSPSK-------VSQTTNFLKKITSLET 36
A + ++FKF S+ ++ TT ++KI +ET
Sbjct: 323 ASKQFEKSFKFGMSEKNLIHKWITDTTEQIEKILEIET 360
>UNIPROTKB|K7ESD1 [details] [associations]
symbol:POLRMT "DNA-directed RNA polymerase, mitochondrial"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR002092 Pfam:PF00940 EMBL:AC004449 HGNC:HGNC:9200
PANTHER:PTHR10102 Ensembl:ENST00000590336 Uniprot:K7ESD1
Length = 143
Score = 265 (98.3 bits), Expect = 1.1e-21, P = 1.1e-21
Identities = 58/128 (45%), Positives = 75/128 (58%)
Query: 871 KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRA-------GLSFAGVHDSYWTHACDVD 923
K ++Q+ FPPNF+HSLD SHMM+TA+ C R+ GL+F VHD YWTHA DV
Sbjct: 16 KPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRSPPLCHRKGLTFVSVHDCYWTHAADVS 75
Query: 924 QMNRILREKFVELYEQPILEDLLASFQKQF---P---------KLNFPPLPERGDFDLRD 971
MN++ RE+FV L+ +PIL+DL K+F P K +P+ G FDL
Sbjct: 76 VMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQAVPKPGAFDLEQ 135
Query: 972 VLESPYFF 979
V S YFF
Sbjct: 136 VKRSTYFF 143
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 980 934 0.00092 122 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 25
No. of states in DFA: 629 (67 KB)
Total size of DFA: 467 KB (2220 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 71.09u 0.72s 71.81t Elapsed: 00:00:05
Total cpu time: 71.10u 0.72s 71.82t Elapsed: 00:00:05
Start: Fri May 10 05:09:53 2013 End: Fri May 10 05:09:58 2013