BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002019
(980 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L6J5|RPO1B_TOBAC DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum
GN=RPOT1-TOM PE=2 SV=2
Length = 1002
Score = 1414 bits (3661), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/1015 (70%), Positives = 817/1015 (80%), Gaps = 48/1015 (4%)
Query: 1 MWRNLARQSSTRNFKFSPSKV----SQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLS 56
MWR +++ + +R F+ S SQ ++ K L+ ++ P LG + S S
Sbjct: 1 MWRYISKHAYSRKFRNSHDSALLGFSQYSSSFGKTRPLQCLCEESTTHPNLGLSQNSIFS 60
Query: 57 ----------------SQKSNLG---QSNFTQSIYPFGVLTSR---------SYASAAEA 88
S+ +LG S F+ F + R SY SAAEA
Sbjct: 61 RISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSYGSAAEA 120
Query: 89 IASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKI 148
I S SE +E+QELI++ +++ ++ +++ KQPK G GMG KY L+RRQIK+
Sbjct: 121 IVSTSE-EDIDEIQELIEEMDKENEAL--KANLQPKQPKTIG-GMGVGKYNFLRRRQIKV 176
Query: 149 ETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHM 208
ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWFEPLRDAIA +Q +
Sbjct: 177 ETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRG 236
Query: 209 TYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQAACQIGEAIENEARIQSFFKS 266
YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQAA IGEAIE+EARI F +
Sbjct: 237 AYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEK 296
Query: 267 TKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKP 326
TKK NA +LE P ++KE+E+L+K+V L+KKQKL+QVR IVK D KP
Sbjct: 297 TKKSNALSGDLE-------ETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKP 349
Query: 327 WGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYG 385
WGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRPAFVHTLK T E +KG RRYG
Sbjct: 350 WGQDNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLK--TVETMKGSRRYG 407
Query: 386 VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRET 445
VI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++GG+ FLPSY+MRTHGA+QQRE
Sbjct: 408 VIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREA 467
Query: 446 IKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPN 505
+K P+ QLEPVFQALDTLG+TKWRVN+++LG++DR+WASGG LA LVD+EDVPLPE P+
Sbjct: 468 VKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPD 527
Query: 506 TDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAY 565
T+DE EI+KWKWKVK KK+N E+HSQRCDIELKL+VARKMKDE+GFYYPHNLDFRGRAY
Sbjct: 528 TEDEAEIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAY 587
Query: 566 PMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTEN 625
PMHPYLNHLGSDLCRG+LEF EG PLG +GL WLKIHLAN+Y GGVDKLSYEGRVAF+EN
Sbjct: 588 PMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSEN 647
Query: 626 HLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCN 685
HL+DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EALRSPSPE+ IS++P+H DGSCN
Sbjct: 648 HLEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCN 707
Query: 686 GLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARL 745
GLQHYAALGRDKLGAAAVNLV GDKPADVYSGIAARVL+IM+ DA KDPA P ARL
Sbjct: 708 GLQHYAALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARL 767
Query: 746 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTA 805
LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKER IEDD++LF AACYAAKTTLTA
Sbjct: 768 LINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTA 827
Query: 806 LGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLAL 865
LGEMFEAARSIMSWLG+CAK+IA EN VRWTTPLGLPVVQPY +LGRHLI+TSLQ L L
Sbjct: 828 LGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTL 887
Query: 866 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQM 925
QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA+ACK +GLSFAGVHDSYWTHACDVDQM
Sbjct: 888 QRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQM 947
Query: 926 NRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
N+ILREKFVELY+ PILE+LL SFQ+ FP L FPPLPERGDFDLR+VLESPYFFN
Sbjct: 948 NKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>sp|Q93Y94|RPOT1_NICSY DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris
GN=RPOT1 PE=2 SV=1
Length = 1002
Score = 1412 bits (3655), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 704/976 (72%), Positives = 807/976 (82%), Gaps = 19/976 (1%)
Query: 8 QSSTRNFKFSPSKVSQTTNFLKKITSLETQTLLDSSCPLLGFRRTSFLSSQKSNLGQSNF 67
+ ST N S+ S + +K+ LE S P LG + S SS K +
Sbjct: 43 EESTTNPNLGLSQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGK 102
Query: 68 TQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNEKGVSILDSSSMLDKQPK 127
S G L RSY SAAEAIAS SE +E+QELI++ N++ ++ +++ KQPK
Sbjct: 103 RGS-GSLGFL--RSYGSAAEAIASTSE-EDIDEIQELIEEMNKENEAL--KTNLQPKQPK 156
Query: 128 KKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWF 187
G GMG KY +L+RRQIK+ETEAWE+AAKEYQ+LL DMCEQKLAPNLPY+KSLFLGWF
Sbjct: 157 TIG-GMGVGKYNLLRRRQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWF 215
Query: 188 EPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG--EVRVVQ 245
EPLRDAIA +Q + YAP+F+ LPA+MMAVITMHKL+GLLMT G RVVQ
Sbjct: 216 EPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQ 275
Query: 246 AACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSL 305
AA IGEAIE+EARI F + TKK NA +LE + P ++KE+E+++K+V L
Sbjct: 276 AASHIGEAIEHEARIHRFLEKTKKSNALSGDLE-------DTPGDIMKERERVRKKVKIL 328
Query: 306 IKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRP 365
+KKQKLQQVR IVK D KPWGQD LVKVGCRLIQ+LMETAYIQPP DQL D PPDIRP
Sbjct: 329 MKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRP 388
Query: 366 AFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRG 424
AFVHTLK T E +KG RRYGVI+CDPLVRKGL+KT RHM+IPYMPMLVPP +W GY++G
Sbjct: 389 AFVHTLK--TVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKG 446
Query: 425 GHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA 484
+ FLPSY+MRTHGA+QQRE +K P+ QLEPVFQALDTLG+TKWR+N+++LG++DR+WA
Sbjct: 447 AYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWA 506
Query: 485 SGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVAR 544
SGG LA LVD+EDVPLPE+P+ +DE +I+KWKWKVK KK+N E+HSQRCDIELKL+VAR
Sbjct: 507 SGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVAR 566
Query: 545 KMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLA 604
KMKDE+GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRG+LEF EG PLGK+GL WLKIHLA
Sbjct: 567 KMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLA 626
Query: 605 NLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEAL 664
N+Y GGVDKLSYEGRVAF+ENH++DIFDSA+RPLEG+RWWLGAEDPFQCLATCIN++EAL
Sbjct: 627 NVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL 686
Query: 665 RSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLE 724
RSPSPE+ IS++P+H DGSCNGLQHYAALGRD LGAAAVNLV GDKPADVYSGIAARVL+
Sbjct: 687 RSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLD 746
Query: 725 IMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCA 784
IM+ DA KDPA P ARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIK+RLKER
Sbjct: 747 IMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGV 806
Query: 785 IEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPV 844
IEDD++LF AACYAAKTTLTALGEMFEAARSIMSWLG+CAK+IA EN VRWTTPLGLPV
Sbjct: 807 IEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPV 866
Query: 845 VQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRA 904
VQPY +LGRHLI+TSLQ L LQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA+ACK +
Sbjct: 867 VQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKES 926
Query: 905 GLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPER 964
GLSFAGVHDSYWTHA DVDQMN+ILREKFVELY+ PILE+LL SFQ+ FP L FPPLPER
Sbjct: 927 GLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPER 986
Query: 965 GDFDLRDVLESPYFFN 980
GDFDLR+VLESPYFFN
Sbjct: 987 GDFDLREVLESPYFFN 1002
>sp|Q8L6J3|RPO2B_TOBAC DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial
OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2
Length = 1021
Score = 1390 bits (3599), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 672/997 (67%), Positives = 792/997 (79%), Gaps = 27/997 (2%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGSEEVQELID 106
L + + +SYAS AEA+A +E ++S +EVQEL+
Sbjct: 95 LGEYLPGDEFLSRPLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEEDVSVVDEVQELLT 154
Query: 107 QFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLAD 166
+ ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAKEY++LL D
Sbjct: 155 ELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFD 211
Query: 167 MCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVIT 226
MCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA Y LPADMMAVIT
Sbjct: 212 MCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVIT 271
Query: 227 MHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPL 284
MHKL+GLLMT G RVVQAA IG+AIE E RI +F + TKK+ A + + D E +
Sbjct: 272 MHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHV 331
Query: 285 TNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLM 344
T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG RLI+LL+
Sbjct: 332 T-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIELLL 384
Query: 345 ETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRKGLEKTGRH 403
+TAYIQPP +QL PPDIRPAF+H++++ KE RRYG+I+CD LV KGLE+T RH
Sbjct: 385 QTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARH 444
Query: 404 MIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDT 463
M+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+PVF+ALDT
Sbjct: 445 MVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDT 504
Query: 464 LGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAK 523
LGSTKWR+NKR+L VIDR+WA GG LA LVD++D PLPE+P+T+DE KW+WKVK+ K
Sbjct: 505 LGSTKWRINKRVLSVIDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVK 564
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
K+N E+HSQRCDIELKL+VARKMKDEEGF+YPHN+DFRGRAYPMHP+LNHLGSD+CRGVL
Sbjct: 565 KENRERHSQRCDIELKLAVARKMKDEEGFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVL 624
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
F EG PLG++GL WLKIHLANL+AGGV+KLS EGR+AFTENH+DDIFDSAD+PLEGRRW
Sbjct: 625 VFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRW 684
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAV 703
WL AEDPFQCLA CINLSEA+RS SPE++ISHIPVH DGSCNGLQHYAALGRD+LGAAAV
Sbjct: 685 WLNAEDPFQCLAVCINLSEAVRSSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAV 744
Query: 704 NLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSV 763
NLV G+KPADVYSGIAARVL+IM+ DA +DPA +P A AR L+NQVDRKLVKQTVMTSV
Sbjct: 745 NLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARALVNQVDRKLVKQTVMTSV 804
Query: 764 YGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGEC 823
YGVTYIGARDQIK+RLKER AI DDS+LFGAACYAAK TLTALGEMFEAARSIM+WLGEC
Sbjct: 805 YGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGEC 864
Query: 824 AKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPP 883
AK+IASEN+ VRWTTPLGLPVVQPY ++GRHLI+TSLQ L LQ+ET+KVMVKRQRTAFPP
Sbjct: 865 AKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQQETEKVMVKRQRTAFPP 924
Query: 884 NFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILE 943
NF+HSLDGSHMMMTAVAC+RAGL+FAGVHDSYWTHACDVD++NRILREKFVELYE PILE
Sbjct: 925 NFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILE 984
Query: 944 DLLASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
LL SFQ +P L FPPLPERGDFDLRDVLESPYFFN
Sbjct: 985 KLLESFQTSYPTLLFPPLPERGDFDLRDVLESPYFFN 1021
>sp|Q8VWF8|RPOT2_NICSY DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2
Length = 1020
Score = 1388 bits (3592), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 674/1005 (67%), Positives = 795/1005 (79%), Gaps = 44/1005 (4%)
Query: 1 MWRNLARQSSTRN-FKFSPSKVSQTTNFL--------KKITSLETQTLLDSSCPLLGFRR 51
MWRN+ +Q S+R K S ++T +FL K T + + S ++GF+
Sbjct: 35 MWRNIIKQLSSRTPQKLLFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVMGFQN 94
Query: 52 TS-------FLSSQ-KSNLGQSNFTQSIYPFGVLTSRSYASAAEAIA-----SESELSGS 98
FLS N +NF +SYAS AEA+A +E ++S
Sbjct: 95 LGEYLPGDEFLSRPLIKNQVNNNFC---------CRKSYASVAEAVAVSSTDAEEDVSVV 145
Query: 99 EEVQELIDQFNEKGVSILDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAK 158
+EV EL+ + ++ + ++ + +GMG KY LKRRQ+K+ETEAWEQAAK
Sbjct: 146 DEVHELLTELKKEEKKQF---AFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAK 202
Query: 159 EYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLP 218
EY++LL DMCEQKLAPNLPYVKSLFLGWFEPLRD IA++Q YA YF LP
Sbjct: 203 EYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLP 262
Query: 219 ADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNN 276
ADMMAVITMHKL+GLLMT G RVVQAA IG+AIE E RI +F + TKK+ A +
Sbjct: 263 ADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDK 322
Query: 277 LEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVG 336
+ D E +T +EQEKL+K+VT+L+KKQKL+ V IV+ DSKPWGQDA KVG
Sbjct: 323 QKEDGEHVT-------QEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDARAKVG 375
Query: 337 CRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG-RRYGVIECDPLVRK 395
RLI LL++TAYIQPP +QL PPDIRPAFVH++++ KE RRYG+I+CD LV K
Sbjct: 376 SRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRTVAKETKSASRRYGIIQCDELVFK 435
Query: 396 GLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLE 455
GLE+T RHM+IPYMPMLVPP+ W GY++GGH +LPSYVMRTHGARQQRE +K R+QL+
Sbjct: 436 GLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQ 495
Query: 456 PVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKW 515
PVF+ALDTLG+TKWR+NKR+L V+DR+WA GG LA LVD++D PLPE+P+T+DE KW
Sbjct: 496 PVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADLVDRDDAPLPEEPDTEDEALRTKW 555
Query: 516 KWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 575
+WKVK+ KK+N E+HSQRCDIELKL+VARKMKDEE F+YPHN+DFRGRAYPMHP+LNHLG
Sbjct: 556 RWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESFFYPHNVDFRGRAYPMHPHLNHLG 615
Query: 576 SDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSAD 635
SD+CRGVLEF EG PLG++GL WLKIHLANL+AGGV+KLS EGR+ FTENH+DDIFDS+D
Sbjct: 616 SDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVEKLSLEGRIGFTENHMDDIFDSSD 675
Query: 636 RPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGR 695
+PLEGRRWWL AEDPFQCLA CINLSEA+RS SPE+++SHIPVH DGSCNGLQHYAALGR
Sbjct: 676 KPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGR 735
Query: 696 DKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLV 755
DKLGAAAVNLV G+KPADVYSGIAARVL+IM+ DA +DPA +P A AR+L+NQVDRKLV
Sbjct: 736 DKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLV 795
Query: 756 KQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARS 815
KQTVMTSVYGVTYIGARDQIK+RLKER AI DDS+LFGAACYAAK TLTALGEMFEAARS
Sbjct: 796 KQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARS 855
Query: 816 IMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVK 875
IM+WLGECAK+IASEN+ VRWTTPLGLPVVQPY ++GRHLI+TSLQ L LQRET+KVMVK
Sbjct: 856 IMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVK 915
Query: 876 RQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVE 935
RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGL+FAGVHDSYWTHACDVD++NRILREKFVE
Sbjct: 916 RQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVE 975
Query: 936 LYEQPILEDLLASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
LYE PILE LL SFQ +P L FPPLPERGDFD+RDVLESPYFFN
Sbjct: 976 LYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020
>sp|P92969|RPOT1_ARATH DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis
thaliana GN=RPOT1 PE=2 SV=1
Length = 976
Score = 1350 bits (3493), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/989 (65%), Positives = 779/989 (78%), Gaps = 22/989 (2%)
Query: 1 MWRNLARQSSTRNFKFSPSKVSQTTNF-LKKITSLETQTLLDSSCPLLGFRRTSFLSSQK 59
MWRN+ ++S R KF S T++ + ++ + SS L G R ++
Sbjct: 1 MWRNILGRASLRKVKFLSDSSSSGTHYPVNRVRGIL------SSVNLSGVRNGLSINPVN 54
Query: 60 SNLGQSNFTQS-IYPFGVLTSRSYASAAEAIAS---ESELSGSEEVQELIDQFNEKGVSI 115
G S+F Y F YA+AA+AI S E E SGS+EV ELI + ++ I
Sbjct: 55 EMGGLSSFRHGQCYVF-----EGYATAAQAIDSTDPEDESSGSDEVNELITEMEKETERI 109
Query: 116 LDSSSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPN 175
+ + PK+ GMG K+YMLK+RQ+K+ETE WE+AA+E +++LADMCEQKLAPN
Sbjct: 110 RKKARLAAIPPKRVIAGMGAQKFYMLKQRQVKMETEEWERAARECREILADMCEQKLAPN 169
Query: 176 LPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLM 235
LPY+KSLFLGWFEP+R+AI D T + K + YAP+ LPAD MAVITMHK++GLLM
Sbjct: 170 LPYMKSLFLGWFEPVRNAIQDDLDTFKIKKGKIPYAPFMEQLPADKMAVITMHKMMGLLM 229
Query: 236 TNA---GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLI 292
TNA G V++V AA QIGEA+E E RI SF + KKNATD + ++E ++ E +
Sbjct: 230 TNAEGVGIVKLVNAATQIGEAVEQEVRINSFLQKKNKKNATDKTINTEAENVSE--EIVA 287
Query: 293 KEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPP 352
KE EK +K+VT L++K KL+QV+ +V+ H KPWGQ+A VKVG RLIQLLME AYIQPP
Sbjct: 288 KETEKARKQVTVLMEKNKLRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPP 347
Query: 353 VDQLGDSPPDIRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIPYMPM 411
+Q D PPDIRPAF ++ T E K RRYG IECDPLV KGL+K+ RHM+IPY+PM
Sbjct: 348 AEQFDDGPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPLVLKGLDKSARHMVIPYLPM 407
Query: 412 LVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
L+PP NW GY++G HFFLPSYVMRTHGA+QQR +K TP+ QLEPV++ALDTLG+TKW++
Sbjct: 408 LIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKEQLEPVYEALDTLGNTKWKI 467
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHS 531
NK++L ++DR+WA+GG + GLVD+EDVP+PE+P +D+ + K W+W+ K A KQN+E+HS
Sbjct: 468 NKKVLSLVDRIWANGGRIGGLVDREDVPIPEEPEREDQEKFKNWRWESKKAIKQNNERHS 527
Query: 532 QRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL 591
QRCDIELKL VARKMKDEEGFYYPHN+DFRGRAYP+HPYLNHLGSDLCRG+LEF EG PL
Sbjct: 528 QRCDIELKLEVARKMKDEEGFYYPHNVDFRGRAYPIHPYLNHLGSDLCRGILEFCEGKPL 587
Query: 592 GKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPF 651
GK+GL WLKIH+ANLYAGGVDKL+YE R+AFTE+HL+DIFDS+DRPLEG+RWWL AEDPF
Sbjct: 588 GKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLEDIFDSSDRPLEGKRWWLNAEDPF 647
Query: 652 QCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKP 711
QCLA CINLSEALRSP PE+ ISHIP+H DGSCNGLQHYAALGRDKLGA AVNLV G+KP
Sbjct: 648 QCLAACINLSEALRSPFPEAAISHIPIHQDGSCNGLQHYAALGRDKLGADAVNLVTGEKP 707
Query: 712 ADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGA 771
ADVY+ IAARVL+IM+ DA++DP T+P A+ A+L+++QVDRKLVKQTVMTSVYGVTY GA
Sbjct: 708 ADVYTEIAARVLKIMQQDAEEDPETFPNATYAKLMLDQVDRKLVKQTVMTSVYGVTYSGA 767
Query: 772 RDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASEN 831
RDQIKKRLKER EDDS F A+CYAAK TL AL EMFEAAR+I SW G+CAK+IASEN
Sbjct: 768 RDQIKKRLKERGTFEDDSLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASEN 827
Query: 832 QAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDG 891
AV WTTPLGLPVVQPY + GRHL++T+LQ L L RETDKVM +RQ TAF PNF+HSLDG
Sbjct: 828 NAVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTLSRETDKVMARRQMTAFAPNFIHSLDG 887
Query: 892 SHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQK 951
SHMMMTAVAC RAGLSFAGVHDS+WTHACDVD MN ILREKFVELYE+PILE+LL SFQK
Sbjct: 888 SHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQK 947
Query: 952 QFPKLNFPPLPERGDFDLRDVLESPYFFN 980
FP ++FPPLPERGDFDLR VLES YFFN
Sbjct: 948 SFPDISFPPLPERGDFDLRKVLESTYFFN 976
>sp|Q9LFV6|RPOT2_ARATH DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=RPOT2 PE=1 SV=1
Length = 1011
Score = 1309 bits (3388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 647/993 (65%), Positives = 768/993 (77%), Gaps = 34/993 (3%)
Query: 1 MWRNLARQSSTRNF-KFSPSKVSQTTNFLKKITSLETQ---------TLLDSSCPLLGFR 50
MWRN+A+Q+ +R+ + + S SQT L ++S E+ +L S C GFR
Sbjct: 40 MWRNIAKQAISRSAARLNVS--SQTRGLL--VSSPESIFSKNLSFRFPVLGSPCHGKGFR 95
Query: 51 RTSFLSSQKSNLGQSNFTQSIYPFGVLTSRSYASAAEAIASESELSGSEEVQELIDQFNE 110
S ++ ++ F++S +R Y S AE E LS E + +D+ +
Sbjct: 96 CLSGITRRE------EFSKSERCLSGTLARGYTSVAE----EEVLSTDVEEEPEVDELLK 145
Query: 111 KGVSILDSSSMLDKQPKKKGT-GMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCE 169
+ S + KK+ GMG K+ L RRQ+KIETE WE+AA EY +LL DMCE
Sbjct: 146 EMKKEKKRESHRSWRMKKQDQFGMGRTKFQNLWRRQVKIETEEWERAAAEYMELLTDMCE 205
Query: 170 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHK 229
QKLAPNLPYVKSLFLGWFEPLRDAIAKDQ + TYA Y + LPAD ++VITMHK
Sbjct: 206 QKLAPNLPYVKSLFLGWFEPLRDAIAKDQELYRLGKSKATYAHYLDQLPADKISVITMHK 265
Query: 230 LVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTND 287
L+G LMT G V+VV AAC +G+AIE E RI +F KKK DN G E T+
Sbjct: 266 LMGHLMTGGDNGCVKVVHAACTVGDAIEQEIRICTFLD--KKKKGDDNEESGGVENETS- 322
Query: 288 PEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETA 347
+KEQ+KL+K+V LIKKQKL VR I++ H +KPW D KVG RLI+LL+ TA
Sbjct: 323 ----MKEQDKLRKKVNELIKKQKLSAVRKILQSHDYTKPWIADVRAKVGSRLIELLVRTA 378
Query: 348 YIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIP 407
YIQ P DQ + PD+RPAFVHT K GR+YGVIECDPLVRKGLEK+GR+ ++P
Sbjct: 379 YIQSPADQQDNDLPDVRPAFVHTFKVAKGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMP 438
Query: 408 YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGST 467
YMPMLVPPL W GY++G + FL SY+M+THGA+QQRE +K P+ QL+PVF+ALDTLGST
Sbjct: 439 YMPMLVPPLKWSGYDKGAYLFLTSYIMKTHGAKQQREALKSAPKGQLQPVFEALDTLGST 498
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNS 527
KWRVNKR+L V+DR+W+SGGC+A +VD+ DVPLPEKP+T+DE +KKWKW+VK+AKK NS
Sbjct: 499 KWRVNKRVLTVVDRIWSSGGCVADMVDRSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNS 558
Query: 528 EKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEE 587
E+HSQRCD ELKLSVARKMKDEE FYYPHN+DFRGRAYPM P+LNHLGSDLCRGVLEF E
Sbjct: 559 ERHSQRCDTELKLSVARKMKDEEAFYYPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAE 618
Query: 588 GHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGA 647
G P+G +GL WLKIHLANLYAGGVDKLS +GR+AFTENHLDDIFDSADRPLEG RWWL A
Sbjct: 619 GRPMGISGLRWLKIHLANLYAGGVDKLSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQA 678
Query: 648 EDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVG 707
EDPFQCLA CI+L+EALRSPSPE+ +SHIP+H DGSCNGLQHYAALGRD LGA AVNLV
Sbjct: 679 EDPFQCLAVCISLTEALRSPSPETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVA 738
Query: 708 GDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVT 767
G+KPADVYSGIA RVL+IMR DAD+DP +P A AR L+NQVDRKLVKQTVMTSVYGVT
Sbjct: 739 GEKPADVYSGIATRVLDIMRRDADRDPEVFPEALRARKLLNQVDRKLVKQTVMTSVYGVT 798
Query: 768 YIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVI 827
YIGARDQIK+RLKER D+ ++FGAACYAAK TL A+ EMF+AAR+IM W GECAK+I
Sbjct: 799 YIGARDQIKRRLKERSDFGDEKEVFGAACYAAKVTLAAIDEMFQAARAIMRWFGECAKII 858
Query: 828 ASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVH 887
ASEN+ VRWTTPLGLPVVQPYHQ+G L++TSLQTL+LQ ETD+V+V+RQRTAFPPNF+H
Sbjct: 859 ASENETVRWTTPLGLPVVQPYHQMGTKLVKTSLQTLSLQHETDQVIVRRQRTAFPPNFIH 918
Query: 888 SLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLA 947
SLDGSHMMMTAVACKRAG+ FAGVHDS+WTHACDVD++N ILREKFVELY QPILE+LL
Sbjct: 919 SLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLE 978
Query: 948 SFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
SF++ FP L+FPPLPERGD DL+ VL+SPYFFN
Sbjct: 979 SFEQSFPHLDFPPLPERGDLDLKVVLDSPYFFN 1011
>sp|P69242|RPOT3_NICSY DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana
sylvestris GN=RPOT3 PE=2 SV=1
Length = 977
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/842 (67%), Positives = 679/842 (80%), Gaps = 17/842 (2%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 205
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 206 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 265
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + +E L+KRV SLIK+ ++ +VR ++K
Sbjct: 266 HNFLEKTKK---LQKHMTG-----AQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS 317
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H + T++ K
Sbjct: 318 E-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGK 376
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 377 SIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 436
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+R+Q++ ++ P Q++ V++ALDTLGSTKWRVNKRIL V++ +WA GG +AGLVD++DV
Sbjct: 437 SRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDV 496
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
P+PE ++DD E+KKWKW+V+ +KK N E HSQRCD ELKLSVARK+KDEEGFYYPHNL
Sbjct: 497 PIPEL-HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNL 555
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WLKIHLA+LYAGG++KL Y+
Sbjct: 556 DFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDA 615
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R+AF ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINLSEAL+S SP + SH+P+
Sbjct: 616 RLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPI 675
Query: 679 HMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYP 738
H DGSCNGLQHYAALGRD + AAAVNLV GDKPADVY+ IA RV I+R D+ KDPAT P
Sbjct: 676 HQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDP 735
Query: 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYA 798
A A+LLI+QVDRKLVKQTVMTSVYGVTY+GAR+QIK+RL+E+ I+DD LF A+CYA
Sbjct: 736 NALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYA 795
Query: 799 AKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRT 858
AK TL ALGE+F+AAR M+WLG+CAKVIASENQ VRWTTPLGLPVVQPY + RH+IRT
Sbjct: 796 AKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRT 855
Query: 859 SLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTH 918
SLQ LALQRE D V V++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL FAGVHDS+WTH
Sbjct: 856 SLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTH 915
Query: 919 ACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPERGDFDLRDVLESPYF 978
ACDVDQMNRILREKFVELY PILEDLL SFQ +P L FPPLP+RGDFDL +VLESPYF
Sbjct: 916 ACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYF 975
Query: 979 FN 980
FN
Sbjct: 976 FN 977
>sp|P69243|RPO3A_TOBAC DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-SYL PE=3 SV=1
Length = 977
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 565/842 (67%), Positives = 679/842 (80%), Gaps = 17/842 (2%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 147 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 205
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 206 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 265
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + +E L+KRV SLIK+ ++ +VR ++K
Sbjct: 266 HNFLEKTKK---LQKHMTG-----AQSQEDMSRETMILRKRVKSLIKRNRVVEVRKLMKS 317
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+QPPVDQ D+PPDIRPAF H + T++ K
Sbjct: 318 E-EPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTPPDIRPAFRHVFRIATRDPGK 376
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 377 SIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 436
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+R+Q++ ++ P Q++ V++ALDTLGSTKWRVNKRIL V++ +WA GG +AGLVD++DV
Sbjct: 437 SRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDV 496
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
P+PE ++DD E+KKWKW+V+ +KK N E HSQRCD ELKLSVARK+KDEEGFYYPHNL
Sbjct: 497 PIPEL-HSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNL 555
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WLKIHLA+LYAGG++KL Y+
Sbjct: 556 DFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDA 615
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R+AF ENH+DDI DSA+ PL G RWWL AEDPFQCLA CINLSEAL+S SP + SH+P+
Sbjct: 616 RLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVFSHLPI 675
Query: 679 HMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYP 738
H DGSCNGLQHYAALGRD + AAAVNLV GDKPADVY+ IA RV I+R D+ KDPAT P
Sbjct: 676 HQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATDP 735
Query: 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYA 798
A A+LLI+QVDRKLVKQTVMTSVYGVTY+GAR+QIK+RL+E+ I+DD LF A+CYA
Sbjct: 736 NALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYA 795
Query: 799 AKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRT 858
AK TL ALGE+F+AAR M+WLG+CAKVIASENQ VRWTTPLGLPVVQPY + RH+IRT
Sbjct: 796 AKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTPLGLPVVQPYFKTQRHVIRT 855
Query: 859 SLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTH 918
SLQ LALQRE D V V++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL FAGVHDS+WTH
Sbjct: 856 SLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTH 915
Query: 919 ACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPERGDFDLRDVLESPYF 978
ACDVDQMNRILREKFVELY PILEDLL SFQ +P L FPPLP+RGDFDL +VLESPYF
Sbjct: 916 ACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYF 975
Query: 979 FN 980
FN
Sbjct: 976 FN 977
>sp|O24600|RPOT3_ARATH DNA-directed RNA polymerase 3, chloroplastic OS=Arabidopsis
thaliana GN=RPOT3 PE=2 SV=1
Length = 993
Score = 1179 bits (3049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/868 (63%), Positives = 684/868 (78%), Gaps = 20/868 (2%)
Query: 119 SSMLDKQPKKKGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPY 178
S M+D+ K + + K+ L+RRQ+K ETEAWE+ EY+DL +MCE+ LAPNLPY
Sbjct: 140 SKMVDQTLKIERKDIDKRKFDSLRRRQVKEETEAWERMVDEYRDLEKEMCEKNLAPNLPY 199
Query: 179 VKSLFLGWFEPLRDAIAKDQATAQDKWKHM--TYAPYFNNLPADMMAVITMHKLVGLLMT 236
VK +FLGWF+PL+D I ++Q ++K K + YAP+ LPAD MAVI MHK++GL+M+
Sbjct: 200 VKHMFLGWFQPLKDVIEREQKLQKNKSKKVRAAYAPHIELLPADKMAVIVMHKMMGLVMS 259
Query: 237 NA--GEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294
G ++VVQAA IG AIE E RI +F K T+K NA D+ E +KE
Sbjct: 260 GHEDGCIQVVQAAVSIGIAIEQEVRIHNFLKRTRKNNAGDSQEE-------------LKE 306
Query: 295 QEKLKKRVTSLIKKQKLQQVRGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
++ L+KRV SLI+++++ +VK +KPWG+ K+G RL++LL+E AY+QPP+
Sbjct: 307 KQLLRKRVNSLIRRKRIIDALKVVKSE-GTKPWGRATQAKLGSRLLELLIEAAYVQPPLT 365
Query: 355 QLGDSPPDIRPAFVHTLKSFTKEALKG--RRYGVIECDPLVRKGLEKTGRHMIIPYMPML 412
Q GDS P+ RPAF H K+ TK RRYGVIECD L+ GL+K+ +HM+IPY+PML
Sbjct: 366 QSGDSIPEFRPAFRHRFKTVTKYPGSKLVRRYGVIECDSLLLAGLDKSAKHMLIPYVPML 425
Query: 413 VPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVN 472
VPP W+GY++GG+ FLPSY+MRTHG+++Q++ +K VF+ALDTLG+TKWRVN
Sbjct: 426 VPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNTKWRVN 485
Query: 473 KRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQ 532
+ IL V++R+WA GG +AGLV++EDVP+PEKP+++D E++ WKW + A K N E+HS
Sbjct: 486 RNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINRERHSL 545
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
RCD+ELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL SDLCRG LEF EG PLG
Sbjct: 546 RCDVELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFAEGRPLG 605
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
K+GLHWLKIHLANLYAGGV+KLS++ R+AF ENHLDDI DSA+ P+ G+RWWL AEDPFQ
Sbjct: 606 KSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLKAEDPFQ 665
Query: 653 CLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPA 712
CLA C+ L++AL+SPSP S ISH+P+H DGSCNGLQHYAALGRD AAAVNLV G+KPA
Sbjct: 666 CLAACVILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGEKPA 725
Query: 713 DVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGAR 772
DVYS I+ RV EIM+ D+ KDP + P A+ A++LI QVDRKLVKQTVMTSVYGVTY+GAR
Sbjct: 726 DVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTSVYGVTYVGAR 785
Query: 773 DQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQ 832
+QIK+RL+E+ I D+ LF AACY+AK TL ALGE+FEAAR+IMSWLG+CAK+IAS+N
Sbjct: 786 EQIKRRLEEKGVITDERMLFAAACYSAKVTLAALGEIFEAARAIMSWLGDCAKIIASDNH 845
Query: 833 AVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGS 892
VRW TPLGLPVVQPY + RHLIRTSLQ LALQRE + V V++QRTAFPPNFVHSLDG+
Sbjct: 846 PVRWITPLGLPVVQPYCRSERHLIRTSLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGT 905
Query: 893 HMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQ 952
HMMMTAVAC+ AGL+FAGVHDSYWTHACDVD MNRILREKFVELY PILEDLL SFQ+
Sbjct: 906 HMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQES 965
Query: 953 FPKLNFPPLPERGDFDLRDVLESPYFFN 980
+P L FPP+P+RGDFDL++VL+S YFFN
Sbjct: 966 YPNLVFPPVPKRGDFDLKEVLKSQYFFN 993
>sp|Q8L6J1|RPO3B_TOBAC DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum
GN=RPOT3-TOM PE=2 SV=2
Length = 977
Score = 1169 bits (3024), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 566/842 (67%), Positives = 678/842 (80%), Gaps = 16/842 (1%)
Query: 145 QIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQDK 204
QIK ETEAWEQ +EY++L +MCE+KLAPNLPYVK L LGWFEPLR AI K+Q A+
Sbjct: 146 QIKAETEAWEQMVEEYRELEREMCEKKLAPNLPYVKKLLLGWFEPLRQAIEKEQ-NAETT 204
Query: 205 WKH-MTYAPYFNNLPADMMAVITMHKLVGLLMTNAGE---VRVVQAACQIGEAIENEARI 260
KH +AP+ ++LPAD MAVI MHKL+GLLM E V+VVQAA QIG A+ENE RI
Sbjct: 205 VKHRAAFAPHIDSLPADKMAVIVMHKLMGLLMMGGKEERCVQVVQAAVQIGMAVENEVRI 264
Query: 261 QSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKG 320
+F + TKK ++ G E + KE L+KRV SLIK+ ++ +VR ++K
Sbjct: 265 HNFLEKTKK---LQKHMTG-----AQSQEDMSKETMILRKRVKSLIKRNRVVEVRKLMKS 316
Query: 321 HVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALK 380
+ + WG+D K+GCRL++LL ETAY+Q PVDQ D+PPDIRPAF H K T++ K
Sbjct: 317 E-EPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPPDIRPAFRHVFKIATRDPGK 375
Query: 381 G--RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
++YGVIECDPLV G+++T + M+IPY+PMLVPP WRGY++GG+ FLPSY+MRTHG
Sbjct: 376 NIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHG 435
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDV 498
+R+Q++ ++ P Q++ V++ALDTLGSTKWRVNKRIL V++ +WA GG +AGLVD++DV
Sbjct: 436 SRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDV 495
Query: 499 PLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNL 558
P+PE N+DD E+KKWKWKV+ +KK N E HSQRCD ELKLSVARK+KDEEGFYYPHNL
Sbjct: 496 PIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDEEGFYYPHNL 555
Query: 559 DFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEG 618
DFRGRAYPMHP+LNHL SDLCRG+LEF EG PLGK+GL WLKIHLA+LYAGGV+KL Y+
Sbjct: 556 DFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDA 615
Query: 619 RVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678
R+AF ENH+ DI DSA+ PL G RWWL AEDPFQCLA CINLSEAL+S SP + ISH+P+
Sbjct: 616 RLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVISHLPI 675
Query: 679 HMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYP 738
H DGSCNGLQHYAALGRD + AAAVNLV G+KPADVY+ IA RV I+R D+ KDPA P
Sbjct: 676 HQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAIDP 735
Query: 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYA 798
A A+LLI+QVDRKLVKQTVMTSVYGVTY+GAR+QIK+RL+E+ I+DD LF A+CYA
Sbjct: 736 NALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDRLLFTASCYA 795
Query: 799 AKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRT 858
AK TL ALGE+F+AAR M+WLG+CAKVIA ENQ VRWTTPLGLPVVQPY + RH+IRT
Sbjct: 796 AKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTPLGLPVVQPYFKTQRHVIRT 855
Query: 859 SLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTH 918
SLQ LALQRE D V V++QRTAFPPNFVHSLDGSHMMMTAVAC+ AGL FAGVHDS+WTH
Sbjct: 856 SLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTH 915
Query: 919 ACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLNFPPLPERGDFDLRDVLESPYF 978
ACDVDQMNRILREKFVELY PILEDLL +FQK +P L FPPLP+RGDF+LR+VLESPYF
Sbjct: 916 ACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYF 975
Query: 979 FN 980
FN
Sbjct: 976 FN 977
>sp|Q8L6J2|RPO2A_TOBAC DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum
GN=RPOT2-SYL PE=3 SV=1
Length = 332
Score = 605 bits (1560), Expect = e-172, Method: Compositional matrix adjust.
Identities = 281/332 (84%), Positives = 308/332 (92%)
Query: 649 DPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGG 708
DPFQCLA CINLSEA+RS SPE+++SHIPVH DGSCNGLQHYAALGRDKLGAAAVNLV G
Sbjct: 1 DPFQCLAVCINLSEAVRSSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 60
Query: 709 DKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTY 768
+KPADVYSGIAARVL+IM+ DA +DPA +P A AR+L+NQVDRKLVKQTVMTSVYGVTY
Sbjct: 61 EKPADVYSGIAARVLDIMKRDAQRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTY 120
Query: 769 IGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIA 828
IGARDQIK+RLKER AI DDS+LFGAACYAAK TLTALGEMFEAARSIM+WLGECAK+IA
Sbjct: 121 IGARDQIKRRLKERGAIADDSELFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIA 180
Query: 829 SENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHS 888
SEN+ VRWTTPLGLPVVQPY ++GRHLI+TSLQ L LQRET+KVMVKRQRTAFPPNF+HS
Sbjct: 181 SENEPVRWTTPLGLPVVQPYRKIGRHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHS 240
Query: 889 LDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLAS 948
LDGSHMMMTAVAC+RAGL+FAGVHDSYWTHACDVD++NRILREKFVELYE PILE LL S
Sbjct: 241 LDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLES 300
Query: 949 FQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
FQ +P L FPPLPERGDFD+RDVLESPYFFN
Sbjct: 301 FQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 332
>sp|O13993|RPOM_SCHPO DNA-directed RNA polymerase, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpo41 PE=3 SV=2
Length = 1154
Score = 531 bits (1369), Expect = e-150, Method: Compositional matrix adjust.
Identities = 335/917 (36%), Positives = 476/917 (51%), Gaps = 107/917 (11%)
Query: 129 KGTGMGTAKYYMLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFE 188
+G A+ +L++ I E W+ E++ +L + ++ N V SLF W+
Sbjct: 280 QGDTFNLARQKLLEKSAILSAAEVWKS---EHESVL-NRGNLQVPKN---VSSLFYSWYV 332
Query: 189 PLRDAIAKDQATAQD---------KWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAG 239
L ++ + D K + Y P+ L + +A +T+ + V L TN
Sbjct: 333 QLEQLFKEEISLIDDLALNESLDKKNDRLIYGPFLKLLSSKKLAALTIME-VAQLSTNPR 391
Query: 240 E---VRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQE 296
RV +G + E E + + K K+ D + + L NDP K +
Sbjct: 392 YDRGARVTTLLGGLGRSFEREFLSEQIQRQEKNKSYKD---KKRLKELFNDPRKFRQA-- 446
Query: 297 KLKKRVTSLIKKQKLQQVRG--IVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVD 354
+K +L R ++ VDS W ++KVG + LL+ A I+
Sbjct: 447 ---------VKNLRLSNTRDNIVLNPSVDS--WPSAIVMKVGSVALCLLLSVAKIEVTAK 495
Query: 355 QL--GDSPPDIRPAFVHTLKSFTKEALKGRRYGVI----ECDPLVRKGLEKTGRHMIIPY 408
L G AFVHT + GR+ G+I E L+ + +EK H+
Sbjct: 496 DLSTGGILKQEVAAFVHTY-----QYSNGRKVGMIVPHVEFYKLLSRDIEKP--HLHPQL 548
Query: 409 MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETI-KMTPRSQLEPVFQALDTLGST 467
+PMLV P W + GG+++ ++R GA +Q + + K + QL+ +F+A+ +LG
Sbjct: 549 LPMLVTPKPWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKV 608
Query: 468 KWRVNKRILGVIDRMWASGGCLAGLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKK 524
WR+N+R+ V+ R+W SG + +E D+P P N+ + + W + K
Sbjct: 609 SWRINQRLFNVLIRIWNSGEKFLSIPPREVKCDMP-PYPKNSINPRDKVIWHTRRKELAA 667
Query: 525 QNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLE 584
+ HSQRCD KL +AR +E+ FY+PH+LDFRGRAYP+ +L+H+ +D+CRG+LE
Sbjct: 668 LKTGAHSQRCDFNYKLEIARAFLNEK-FYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLE 726
Query: 585 FEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWW 644
F G PLG GL+WLK+HLANL+ G+ K + R AF ++++ ++FDSADRPL+G +WW
Sbjct: 727 FSTGKPLGPKGLNWLKVHLANLF--GISKKDFATRQAFVDDNMQEVFDSADRPLDGNKWW 784
Query: 645 LGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVN 704
A+DPFQ LA C ++EA+RS ES ISHIP+ DG+CNGLQHYAALG D GA VN
Sbjct: 785 SKADDPFQALAACFEIAEAVRSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQVN 844
Query: 705 LVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVY 764
L D P+DVY +A V ++ DA+ A L ++V R +VK TVMT+VY
Sbjct: 845 LWPSDHPSDVYEAVAEIVRGFLKKDAEAGD------EMANFLKDKVTRSVVKPTVMTNVY 898
Query: 765 GVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECA 824
GVTY+GAR QI ++L+ +E K+ A Y K AL +F A I WL C
Sbjct: 899 GVTYVGARKQISEKLENIDGME-KLKVADYANYLTKKVFEALRSLFTQAHEIQDWLSACC 957
Query: 825 KVIA-------------SENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQR--ET 869
+I E V WTT L LP+VQPY IRT+LQT+ ++ T
Sbjct: 958 NLITHSLPADYIKEGIKDELTPVVWTTLLNLPIVQPYRNYKSRQIRTNLQTVFIEERDRT 1017
Query: 870 DKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRIL 929
V +Q TAFPPNF+HSLD +HM MT + C ++FA VHDSYWTHACDVDQMN +L
Sbjct: 1018 ATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNINFAAVHDSYWTHACDVDQMNSLL 1077
Query: 930 REKFVELYEQPIL-------------------------EDLLASF-QKQFPKLNFPPLPE 963
RE FV L+ I+ EDL A F K + L FPPLP
Sbjct: 1078 REAFVLLHSNNIMERLKQEFEERYKGFLVSKKAIKANDEDLKAKFGNKSYIPLEFPPLPA 1137
Query: 964 RGDFDLRDVLESPYFFN 980
RG DL+ VLES YFF+
Sbjct: 1138 RGALDLKKVLESKYFFS 1154
>sp|P13433|RPOM_YEAST DNA-directed RNA polymerase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO41 PE=1
SV=2
Length = 1351
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 301/787 (38%), Positives = 432/787 (54%), Gaps = 92/787 (11%)
Query: 208 MTYAPYFNNLPADMMAVITMHKLVGLLMTNA--GEVRVVQAACQIGEAIENEARIQSFFK 265
+ Y PY + M VIT+ +L+ L T +R +A +G+AIE E R + K
Sbjct: 494 LGYGPYLTLIDPGKMCVITILELLKLNSTGGVIEGMRTARAVISVGKAIEMEFRSEQVLK 553
Query: 266 STKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQKLQQVRGIVKGHVDSK 325
S + D K E +KL + S+ + +++Q + +
Sbjct: 554 SESQA--------------FRDVNKKSPEFKKLVQNAKSVFRSSQIEQSKIL-------- 591
Query: 326 PWGQDALVKVGCRLIQLLMETAYIQ----PPVDQL---GDSPPDIRPAFVHTLKSFTKEA 378
W Q ++G LI +L++ A + PV + G++P AF H +
Sbjct: 592 -WPQSIRARIGSVLISMLIQVAKVSVQGVDPVTKAKVHGEAP-----AFAHGYQYHN--- 642
Query: 379 LKGRRYGVIECDPLVRKGLEKTGRHMIIPY----MPMLVPPLNWRGYNRGGHFFLPSYVM 434
G + GV++ + + L G +I +PMLV P W + GG+ + S ++
Sbjct: 643 --GSKLGVLKIHKTLIRQL--NGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLL 698
Query: 435 RTHGARQQRETIKM-TPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASG-GCL--A 490
RT + +Q +K + ++ V+ L+ LG T W VN+++ V+ ++W G G L
Sbjct: 699 RTKDSPEQVAYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIP 758
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
G D+ +P P P D + ++ WK +VKT + S S RCD KL +AR E+
Sbjct: 759 GAQDEMVLP-PAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEK 817
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGG 610
Y+PHNLDFRGRAYP+ P+ NHLG+D+ RG+L F G LG +GL WLKIHL+NL+ G
Sbjct: 818 -LYFPHNLDFRGRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLF--G 874
Query: 611 VDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPE 670
DKL + RVAFTE+HL DI DSA+ PL G RWW A+ P+Q LATC L+E ++ +PE
Sbjct: 875 FDKLPLKDRVAFTESHLQDIKDSAENPLTGDRWWTTADKPWQALATCFELNEVMKMDNPE 934
Query: 671 STISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARV---LEIMR 727
ISH PVH DG+CNGLQHYAALG D GA VNLV DKP DVY+ +A V LEI
Sbjct: 935 EFISHQPVHQDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLEIAA 994
Query: 728 ADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIED 787
D++ A++L +++ RK+VKQTVMT+VYGVTY+GA QI K+L I D
Sbjct: 995 EKGDEN---------AKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQL---SPIFD 1042
Query: 788 DSK-LFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQ-------------- 832
D K + Y K +A+ E+F +A I WLGE AK I+ +
Sbjct: 1043 DRKESLDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDEKSFKNGNKP 1102
Query: 833 ----AVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQR--ETDKVMVKRQRTAFPPNFV 886
+V WTTPLGLP+VQPY + + + T+LQT+ + + V +RQ+ PPNF+
Sbjct: 1103 DFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNARRQKAGLPPNFI 1162
Query: 887 HSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLL 946
HSLD SHM+++A C + GL FA VHDSYWTHA D+D MN +LRE+F++L+E ++ L
Sbjct: 1163 HSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIKLHEVDLVLRLK 1222
Query: 947 ASFQKQF 953
F +++
Sbjct: 1223 EEFDQRY 1229
>sp|O00411|RPOM_HUMAN DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT
PE=1 SV=2
Length = 1230
Score = 484 bits (1245), Expect = e-135, Method: Compositional matrix adjust.
Identities = 272/681 (39%), Positives = 388/681 (56%), Gaps = 40/681 (5%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRY 384
+PW +++G L ++L++ + +D+ S + P H SF ++
Sbjct: 565 QPWPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSS-RLVPVLYHVY-SFRNV----QQI 618
Query: 385 GVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMRT-HGAR 440
G+++ P + LEK + +PML PPL W + G P+ +MRT GA
Sbjct: 619 GILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGAT 678
Query: 441 QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGC--LAGLVDQEDV 498
Q +E ++ P + L AL LG+ WRVN R+L ++ +++ + GC L +
Sbjct: 679 QHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEA 738
Query: 499 PLPEK---PNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYP 555
P P + P++ + + ++ +K E HS R + +LS+A+ ++D F+ P
Sbjct: 739 PQPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRV-FWLP 797
Query: 556 HNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLS 615
HN+DFRGR YP P+ NHLGSD+ R +LEF +G PLG GL WLKIHL NL G +
Sbjct: 798 HNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNL-TGLKKREP 856
Query: 616 YEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISH 675
R+AF E +DDI DSAD+PL GR+WW+GAE+P+Q LA C+ ++ A+R+ P + +SH
Sbjct: 857 LRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSH 916
Query: 676 IPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPA 735
+PVH DGSCNGLQHYAALGRD +GAA+VNL D P DVYSG+AA+V R DA +
Sbjct: 917 LPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRG-- 974
Query: 736 TYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAA 795
A++L + RK+VKQTVMT VYGVT G R QI+KRL+E + ++ A+
Sbjct: 975 ----MRVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEAS 1029
Query: 796 CYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGR-H 854
Y + +L EMF R+I WL E A++I+ V W TPLG+PV+QPY +
Sbjct: 1030 HYLVRQVFKSLQEMFSGTRAIQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVK 1089
Query: 855 LIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGV 911
I +Q++ D K ++Q+ FPPNF+HSLD SHMM+TA+ C R GL+F V
Sbjct: 1090 QIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSV 1149
Query: 912 HDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFP------------KLNFP 959
HD YWTHA DV MN++ RE+FV L+ +PIL+DL K+F K
Sbjct: 1150 HDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQ 1209
Query: 960 PLPERGDFDLRDVLESPYFFN 980
+P+ G FDL V S YFF+
Sbjct: 1210 AVPKPGAFDLEQVKRSTYFFS 1230
>sp|P38671|RPOM_NEUCR DNA-directed RNA polymerase, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 /
FGSC 987) GN=cyt-5 PE=3 SV=2
Length = 1423
Score = 483 bits (1244), Expect = e-135, Method: Compositional matrix adjust.
Identities = 263/699 (37%), Positives = 394/699 (56%), Gaps = 80/699 (11%)
Query: 318 VKGHVDSKPWGQDALVKVGCRLIQLLMETAYI----QPPVDQLGDSPPDIRPAFVHTLKS 373
V +D + W KVG L+ L++TA I + PV + + +PAF H +
Sbjct: 539 VAVEMDDEAWTTTIRTKVGAALLSALLDTAKITLVREDPVTKTLIT--QNQPAFSHVM-- 594
Query: 374 FTKEALKGRRYG-VIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHFFLPSY 432
+ KG++ G +I +V + + + ++PM+ PP W + +G + +
Sbjct: 595 ---QLRKGKKIGTIIPNKAVVELLVREPVPDFLARHLPMVTPPDPWVSFEKGAYLETKTP 651
Query: 433 VMR-THGARQQR-ETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLA 490
V+R +G R+QR T R ++ VF+ LD LG T W++N + V+ +W SG +A
Sbjct: 652 VLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLGKTGWKINSPVFKVMLDVWNSGKQVA 711
Query: 491 GLVDQE---DVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMK 547
+ + D+P PE +T+D T + W ++K + + S HSQRC + +L +AR +
Sbjct: 712 NIPPLDPIFDLP-PEPASTEDPTVKRAWLKEIKVIENERSGLHSQRCFMNFQLEIARAYR 770
Query: 548 DEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY 607
D+ FY+PHN+DFRGRAYP+ PYLNH+G+D RG++ F +G PLG++GL WLK+HLAN+Y
Sbjct: 771 DQT-FYFPHNVDFRGRAYPIPPYLNHMGADHVRGLMLFAKGKPLGESGLRWLKVHLANVY 829
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSP 667
G DK S + R F + ++++I DS + PL G +WWL AEDP+QCLATC L+ AL
Sbjct: 830 --GFDKASLQERQDFADENIENIRDSVNNPLNGNQWWLQAEDPWQCLATCFELAAALELE 887
Query: 668 SPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMR 727
P +SH+P+H DG+CNGLQHYAALG D GA VNLV GD+PADVYS +A V++ +
Sbjct: 888 DPTKYVSHLPIHQDGTCNGLQHYAALGGDTWGAQQVNLVPGDRPADVYSAVAKLVIKGIE 947
Query: 728 ADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCA-IE 786
D KD A+ + ++ RK+VKQTVMT+VYGVTY+GAR Q+ K+++ I
Sbjct: 948 DDLAKD------NEFAKAMHGKITRKVVKQTVMTNVYGVTYVGARKQVLKQIEAAYPNIT 1001
Query: 787 DDSKLFGA--ACYAAKTTLTALGEMFEAARSIMSWLGECA-------------------- 824
+S + A A Y + A+ MF+ A I +WLGE
Sbjct: 1002 AESGIEAALLASYVTQHIFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLDEFERSER 1061
Query: 825 ----------------------------KVIASENQAVRWTTPLGLPVVQPYHQLGRHLI 856
+++ + + WTTPL +PVVQPY + G +
Sbjct: 1062 SPHGDGTASGENITLAGNPRKSSAHKNDEILNNFQSTIIWTTPLRMPVVQPYRKHGTKTV 1121
Query: 857 RTSLQTLALQ--RETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDS 914
T +Q L + +D V ++Q AFPPNF+HSLD SHM+++A+ C GL+FA VHDS
Sbjct: 1122 STCMQDLVMTIPERSDPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLTFAAVHDS 1181
Query: 915 YWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF 953
+WTHA D+D MN +LR+ F+ ++ + ++ L A FQ ++
Sbjct: 1182 FWTHASDIDSMNAVLRDAFIRIHSEDVIGRLAAEFQARY 1220
Score = 40.8 bits (94), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 956 LNFPPLPERGDFDLRDVLESPYFFN 980
L FPP+PE+GDFD+R + +S YFF+
Sbjct: 1399 LVFPPIPEKGDFDVRSLKDSTYFFS 1423
>sp|Q8BKF1|RPOM_MOUSE DNA-directed RNA polymerase, mitochondrial OS=Mus musculus GN=Polrmt
PE=2 SV=1
Length = 1207
Score = 481 bits (1237), Expect = e-134, Method: Compositional matrix adjust.
Identities = 268/688 (38%), Positives = 389/688 (56%), Gaps = 48/688 (6%)
Query: 325 KPWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAF-VHTLKSFTKEALKGRR 383
+PW L+++G +L +LL++ + + + I + V++ +S+ R+
Sbjct: 536 QPWSVPVLLQLGKQLAELLVQAVQMPRSLAARQGAQRSIPVLYHVYSFRSY-------RQ 588
Query: 384 YGVIECDPLVRKGLEKTGRHMII---PYMPMLVPPLNWRGYNRGGHFFLPSYVMR-THGA 439
G+++ P LE + +PML PPL W + G + + +MR T G
Sbjct: 589 VGILKPHPAFTHLLETAAEPTLTFETTEVPMLCPPLPWTSLHSGAYLLSSTKLMRATEGT 648
Query: 440 RQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVD--QED 497
Q + ++ P +QL AL LG+ WRVN +L ++ +++ GC+ V + +
Sbjct: 649 TQHQRLLEQCPPAQLHGPLDALTQLGNCAWRVNGHLLDLVLQIFRDKGCMPLGVPPPRSE 708
Query: 498 VPLPEKPNTD-DETEIKKWKWKVKTAK--KQNSEKHSQRCDIELKLSVARKMKDEEGFYY 554
P P + T + K + + + A+ K E HS R + +LS+A+ ++ F+
Sbjct: 709 APRPARYQLPPGSTPVHKSELRKELARCLKVAREMHSLRSEALYRLSLAQHLR-HRVFWL 767
Query: 555 PHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKL 614
PHN+DFRGR YP P+ NHLGSDL R +LEF EG PLG GL WLKIHL NL G
Sbjct: 768 PHNMDFRGRTYPCPPHFNHLGSDLARALLEFAEGRPLGPRGLDWLKIHLINL-TGLKKGD 826
Query: 615 SYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTIS 674
S R+AF + +++I DSAD PL GR+WW+ A++P+Q LA C+ ++ A+RSP P + IS
Sbjct: 827 SLRMRLAFADEVMEEILDSADNPLTGRKWWMEADEPWQTLACCMEVAHAVRSPDPAAYIS 886
Query: 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDP 734
H+PVH DGSCNGLQHYAALGRD +GAA+VNL D P DVY +A +V E + DA +
Sbjct: 887 HLPVHQDGSCNGLQHYAALGRDSVGAASVNLTPSDLPQDVYREVATQVEEFRQQDAKEG- 945
Query: 735 ATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGA 794
A++L + RK+VKQTVMT VYGVT G R QI+KRL+E + ++ A
Sbjct: 946 -----LRVAQVLEGFISRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQEF-VWEA 999
Query: 795 ACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH 854
+ Y + +L EMF + R+I WL E A +I+ V W TPLG+P++QPYH+ +
Sbjct: 1000 SHYLVRQVFKSLQEMFTSTRAIQHWLTESANLISHAGWPVEWVTPLGIPIIQPYHRESKV 1059
Query: 855 LIRTSLQTLALQR---ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGV 911
++ LQ++ L E+ K +Q+ FPPNF+HSLD SHMM+TA+ C R GL F V
Sbjct: 1060 QVKGGLQSITLTSSVDESQKPNTLKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLIFVSV 1119
Query: 912 HDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLN-------------- 957
HD +WTHA D+ MN + RE+FV L+ QPILEDL +K+F ++
Sbjct: 1120 HDCFWTHAADIPTMNEVCREQFVRLHSQPILEDLAKFLKKRFCSVSSIKSLKSSERALVT 1179
Query: 958 -----FPPLPERGDFDLRDVLESPYFFN 980
LP+ G FDL V+ S YFF+
Sbjct: 1180 KLQETLQSLPKTGTFDLGQVIRSTYFFS 1207
>sp|P07659|RPOL_BPT3 DNA-directed RNA polymerase OS=Enterobacteria phage T3 GN=1 PE=3
SV=1
Length = 884
Score = 314 bits (805), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 270/921 (29%), Positives = 428/921 (46%), Gaps = 152/921 (16%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDLL---------ADMCEQK--LAPNLPYVKSLFLGWFEP 189
L + Q+ +E E++E + + +L AD K LA LP + + + W E
Sbjct: 33 LAKEQLALEHESYELGERRFLKMLERQAKAGEIADNAAAKPLLATLLPKLTTRIVEWLE- 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
+ ++ K YAP L + A IT+ K++ +T+ + AA
Sbjct: 92 --------EYASKKGRKPSAYAP-LQLLKPEASAFITL-KVILASLTSTNMTTIQAAAGM 141
Query: 250 IGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKKQ 309
+G+AIE+EAR +LE +K ++EQ L KR + KK
Sbjct: 142 LGKAIEDEARFGRI-----------RDLEAKHF------KKHVEEQ--LNKRHGQVYKKA 182
Query: 310 KLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLME-TAYIQPPVDQLGDSPPD 362
+Q V RG++ G S W ++ + VG RLI++L+E T ++ G++ D
Sbjct: 183 FMQVVEADMIGRGLLGGEAWSS-WDKETTMHVGIRLIEMLIESTGLVELQRHNAGNAGSD 241
Query: 363 IRPAFVHTLKSFTKEALK-GRRYGVIECDPLVRKGLEKTGRHMIIP-YMPMLVPPLNWRG 420
EAL+ + Y D L ++ G I P + P +VPP W
Sbjct: 242 -------------HEALQLAQEY----VDVLAKRAGALAG---ISPMFQPCVVPPKPWVA 281
Query: 421 YNRGGHFF---LPSYVMRTHGAR--QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRI 475
GG++ P ++RTH + + E + M V++A++ +T W++NK++
Sbjct: 282 ITGGGYWANGRRPLALVRTHSKKGLMRYEDVYMPE------VYKAVNLAQNTAWKINKKV 335
Query: 476 LGVIDRMWASGGC-LAGLVDQEDVPLPEKPNTDDETE--IKKWKWKVKTAKKQNSEKHSQ 532
L V++ + C +A + E LP KP+ D E +K+WK + + + S+
Sbjct: 336 LAVVNEIVNWKNCPVADIPSLERQELPPKPDDIDTNEAALKEWKKAAAGIYRLDKARVSR 395
Query: 533 RCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLG 592
R +E L A K ++ ++P+N+D+RGR Y + P N G+D+ +G+L +G P+G
Sbjct: 396 RISLEFMLEQANKFASKKAIWFPYNMDWRGRVYAV-PMFNPQGNDMTKGLLTLAKGKPIG 454
Query: 593 KAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQ 652
+ G +WLKIH AN GVDK+ + R+AF E H+DDI A P+ WW + PF
Sbjct: 455 EEGFYWLKIHGAN--CAGVDKVPFPERIAFIEKHVDDILACAKDPI-NNTWWAEQDSPFC 511
Query: 653 CLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPA 712
LA C + S +P+ DGSC+G+QH++A+ RD++G AVNL+ +
Sbjct: 512 FLAFCFEYAGVTHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQ 569
Query: 713 DVYSGIAARVLEIMRADA------------DKDPATYP-------YASCARLLINQVDRK 753
D+Y +A +V EI++ DA DKD + L V R
Sbjct: 570 DIYGIVAQKVNEILKQDAINGTPNEMITVTDKDTGEISEKLKLGTSTLAQQWLAYGVTRS 629
Query: 754 LVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFG----AACYAAKTTLTALGEM 809
+ K++VMT YG G R Q+ + +F AA Y AK A+
Sbjct: 630 VTKRSVMTLAYGSKEFGFRQQVLDDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWDAVSVT 689
Query: 810 FEAARSIMSWLGECAKVIASENQ------------AVRWTTPLGLPVVQPYHQ------- 850
AA M+WL AK++A+E + AV WTTP G PV Q Y +
Sbjct: 690 VVAAVEAMNWLKSAAKLLAAEVKDKKTKEILRHRCAVHWTTPDGFPVWQEYRKPLQKRLD 749
Query: 851 ---LGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACKRAGL 906
LG+ ++ ++ TL + + +Q + PNFVHS DGSH+ MT V A ++ G+
Sbjct: 750 MIFLGQFRLQPTINTL----KDSGIDAHKQESGIAPNFVHSQDGSHLRMTVVYAHEKYGI 805
Query: 907 -SFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKL-------NF 958
SFA +HDS+ T D ++ + +RE V YE D+LA F QF
Sbjct: 806 ESFALIHDSFGTIPADAGKLFKAVRETMVITYEN---NDVLADFYSQFADQLHETQLDKM 862
Query: 959 PPLPERGDFDLRDVLESPYFF 979
PPLP++G+ +L+D+L+S + F
Sbjct: 863 PPLPKKGNLNLQDILKSDFAF 883
>sp|P00573|RPOL_BPT7 DNA-directed RNA polymerase OS=Enterobacteria phage T7 GN=1 PE=1
SV=2
Length = 883
Score = 296 bits (759), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 260/930 (27%), Positives = 411/930 (44%), Gaps = 170/930 (18%)
Query: 141 LKRRQIKIETEAWEQAAKEYQDL---------LADMCEQK--LAPNLPYVKSLFLGWFEP 189
L R Q+ +E E++E ++ + +AD K + LP + + WFE
Sbjct: 32 LAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEE 91
Query: 190 LRDAIAKDQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQ 249
++ K Q + + + +A IT+ + L T+A V A
Sbjct: 92 VKAKRGKRPTAFQ----------FLQEIKPEAVAYITIKTTLACL-TSADNTTVQAVASA 140
Query: 250 IGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLI 306
IG AIE+EAR I+ KKN +E+L KRV +
Sbjct: 141 IGRAIEDEARFGRIRDLEAKHFKKNV----------------------EEQLNKRVGHVY 178
Query: 307 KKQKLQQV------RGIVKGHVDSKPWGQDALVKVGCRLIQLLMETAYIQPPVDQ----L 356
KK +Q V +G++ G S W ++ + VG R I++L+E+ + Q +
Sbjct: 179 KKAFMQVVEADMLSKGLLGGEAWSS-WHKEDSIHVGVRCIEMLIESTGMVSLHRQNAGVV 237
Query: 357 GDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPL 416
G I L EA+ R + P+ + P +VPP
Sbjct: 238 GQDSETIE------LAPEYAEAIATRAGALAGISPM---------------FQPCVVPPK 276
Query: 417 NWRGYNRGGHFF---LPSYVMRTHG--ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRV 471
W G GG++ P ++RTH A + E + M V++A++ +T W++
Sbjct: 277 PWTGITGGGYWANGRRPLALVRTHSKKALMRYEDVYMPE------VYKAINIAQNTAWKI 330
Query: 472 NKRILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDET--EIKKWKWKVKTAK 523
NK++L V + + C ED+P LP KP D + WK
Sbjct: 331 NKKVLAVANVITKWKHCPV-----EDIPAIEREELPMKPEDIDMNPEALTAWKRAAAAVY 385
Query: 524 KQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVL 583
+++ + S+R +E L A K + + ++P+N+D+RGR Y + + N G+D+ +G+L
Sbjct: 386 RKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGLL 444
Query: 584 EFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRW 643
+G P+GK G +WLKIH AN GVDK+ + R+ F E + ++I A PLE W
Sbjct: 445 TLAKGKPIGKEGYYWLKIHGAN--CAGVDKVPFPERIKFIEENHENIMACAKSPLENT-W 501
Query: 644 WLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAV 703
W + PF LA C + S +P+ DGSC+G+QH++A+ RD++G AV
Sbjct: 502 WAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLPLAFDGSCSGIQHFSAMLRDEVGGRAV 559
Query: 704 NLVGGDKPADVYSGIAARVLEIMRADA----DKDPATY---------------PYASCAR 744
NL+ + D+Y +A +V EI++ADA D + T A +
Sbjct: 560 NLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTKALAGQ 619
Query: 745 LLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFG----AACYAAK 800
L V R + K++VMT YG G R Q+ + + +F AA Y AK
Sbjct: 620 WLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAK 679
Query: 801 TTLTALGEMFEAARSIMSWLGECAKVIASENQ------------AVRWTTPLGLPVVQPY 848
++ AA M+WL AK++A+E + AV W TP G PV Q Y
Sbjct: 680 LIWESVSVTVVAAVEAMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEY 739
Query: 849 HQ----------LGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA 898
+ LG+ ++ ++ T + ++ +Q + PNFVHS DGSH+ T
Sbjct: 740 KKPIQTRLNLMFLGQFRLQPTINT----NKDSEIDAHKQESGIAPNFVHSQDGSHLRKTV 795
Query: 899 V-ACKRAGL-SFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKL 956
V A ++ G+ SFA +HDS+ T D + + +RE V+ YE D+LA F QF
Sbjct: 796 VWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESC---DVLADFYDQFADQ 852
Query: 957 -------NFPPLPERGDFDLRDVLESPYFF 979
P LP +G+ +LRD+LES + F
Sbjct: 853 LHESQLDKMPALPAKGNLNLRDILESDFAF 882
>sp|P18147|RPOL_BPK11 DNA-directed RNA polymerase OS=Enterobacteria phage K11 GN=1 PE=3
SV=1
Length = 906
Score = 289 bits (740), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 233/803 (29%), Positives = 370/803 (46%), Gaps = 125/803 (15%)
Query: 247 ACQIGEAIENEAR---IQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVT 303
+ Q+G+A+E+EAR I+ + KKN D +L KRV
Sbjct: 158 SSQLGKALEDEARFGRIREQEAAYFKKNVAD----------------------QLDKRVG 195
Query: 304 SLIKKQKLQQVRG--IVKGHVDSKPWGQ---DALVKVGCRLIQLLME-TAYIQPPVDQLG 357
+ KK +Q V I KG + W D + VG +L++LL+E T ++ +++
Sbjct: 196 HVYKKAFMQVVEADMISKGMLGGDNWASWKTDEQMHVGTKLLELLIEGTGLVEMTKNKMA 255
Query: 358 DSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLN 417
D D+ + L E L R + P+ + P +VPP
Sbjct: 256 DGSDDVTSMQMVQLAPAFVELLSKRAGALAGISPM---------------HQPCVVPPKP 300
Query: 418 WRGYNRGGHFFL---PSYVMRTHGARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKR 474
W GG++ + P ++RTH + R + + V++A++ +T W+VNK+
Sbjct: 301 WVETVGGGYWSVGRRPLALVRTHSKKALRRYADV----HMPEVYKAVNLAQNTPWKVNKK 356
Query: 475 ILGVIDRMWASGGCLAGLVDQEDVP------LPEKPNTDDETEIKKWKWKVKTAK--KQN 526
+L V++ + C G DVP LP +P+ D E+ + W+ + A +++
Sbjct: 357 VLAVVNEIVNWKHCPVG-----DVPAIEREELPPRPDDIDTNEVARKAWRKEAAAVYRKD 411
Query: 527 SEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFE 586
+ S+RC E ++ A K + + ++P+N+D+RGR Y + + N G+D+ +G L
Sbjct: 412 KARQSRRCRCEFMVAQANKFANHKAIWFPYNMDWRGRVYAVSMF-NPQGNDMTKGSLTLA 470
Query: 587 EGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLG 646
+G P+G G +WLKIH AN GVDK+ + R+ F E + +I SA PL WW
Sbjct: 471 KGKPIGLDGFYWLKIHGAN--CAGVDKVPFPERIKFIEENEGNILASAADPL-NNTWWTQ 527
Query: 647 AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLV 706
+ PF LA C + ++ S +P+ DGSC+G+QH++A+ RD +G AVNL+
Sbjct: 528 QDSPFCFLAFCFEYA-GVKHHGLNYNCS-LPLAFDGSCSGIQHFSAMLRDSIGGRAVNLL 585
Query: 707 GGDKPADVYSGIAARVLEIMRAD------------ADKDPATY-------PYASCARLLI 747
D D+Y +A +V E++ ADK+ + A+ L
Sbjct: 586 PSDTVQDIYKIVADKVNEVLHQHAVNGSQTVVEQIADKETGEFHEKVTLGESVLAAQWLQ 645
Query: 748 NQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFG----AACYAAKTTL 803
V RK+ K++VMT YG R Q+ + + + +F AA Y AK
Sbjct: 646 YGVTRKVTKRSVMTLAYGSKESLVRQQVLEDTIQPAIDNGEGLMFTHPNQAAGYMAKLIW 705
Query: 804 TALGEMFEAARSIMSWLGECAKVIASENQ------------AVRWTTPLGLPVVQPY--- 848
A+ AA M+WL AK++A+E + A+ W TP G PV Q Y
Sbjct: 706 DAVTVTVVAAVEAMNWLKSAAKLLAAEVKDKKTKEVLRKRCAIHWVTPDGFPVWQEYRKQ 765
Query: 849 HQLGRHLIRTSLQTLALQRETDK---VMVKRQRTAFPPNFVHSLDGSHMMMTAV-ACKRA 904
+Q L+ + + T K + +Q + PNFVHS DGSH+ MT V A +
Sbjct: 766 NQARLKLVFLGQANVKMTYNTGKDSEIDAHKQESGIAPNFVHSQDGSHLRMTVVHANEVY 825
Query: 905 GL-SFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKL------- 956
G+ SFA +HDS T D + + +RE V+ YE D++A F QF
Sbjct: 826 GIDSFALIHDSSGTIPADAGNLFKAVRETMVKTYED---NDVIADFYDQFADQLHESQLD 882
Query: 957 NFPPLPERGDFDLRDVLESPYFF 979
P +P +GD +LRD+LES + F
Sbjct: 883 KMPAVPAKGDLNLRDILESDFAF 905
>sp|Q8L6J4|RPO1A_TOBAC DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana tabacum
GN=RPOT1-SYL PE=3 SV=2
Length = 155
Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/155 (85%), Positives = 142/155 (91%)
Query: 826 VIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNF 885
+IA EN VRWTTPLGLPVVQPY +LGRHLI+TSLQ L LQRETDKVMVKRQRTAFPPNF
Sbjct: 1 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 60
Query: 886 VHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDL 945
VHSLDGSHMMMTA+ACK +GLSFAGVHDSYWTHA DVDQMN+ILREKFVELY+ PILE+L
Sbjct: 61 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 120
Query: 946 LASFQKQFPKLNFPPLPERGDFDLRDVLESPYFFN 980
L SFQ+ FP L FPPLPERGDFDLR+VLESPYFFN
Sbjct: 121 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 155
>sp|P06221|RPOL_BPSP6 DNA-directed RNA polymerase OS=Enterobacteria phage SP6 PE=2 SV=1
Length = 874
Score = 227 bits (578), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 224/850 (26%), Positives = 379/850 (44%), Gaps = 136/850 (16%)
Query: 213 YFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQA-ACQIGEAIENEARIQSFFKSTKKKN 271
+ + ++ A ITM ++ +L T+A +QA A + E IE++ R
Sbjct: 77 FLQCVENEVAAYITMKVVMDMLNTDA----TLQAIAMSVAERIEDQVRF----------- 121
Query: 272 ATDNNLEGDSEPLTNDPEKLIKEQEKLKKRVTSLIKK--QKLQQVRGIVKGHVDSK---- 325
+ LEG + K EK+KK + + K + V + + V K
Sbjct: 122 ---SKLEGHAA----------KYFEKVKKSLKASRTKSYRHAHNVAVVAEKSVAEKDADF 168
Query: 326 ----PWGQDALVKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
W ++ +++G L+++L + + P F+ ++++ G
Sbjct: 169 DRWEAWPKETQLQIGTTLLEILEGSVFYNG------------EPVFMRAMRTY-----GG 211
Query: 382 RRYGVIECDPLVRKGLEKTGRHM--IIP-YMPMLVPPLNWRGYNRGGHFFLPSYVMRTHG 438
+ ++ V + + H+ + P Y P ++PP WR GG F R
Sbjct: 212 KTIYYLQTSESVGQWISAFKEHVAQLSPAYAPCVIPPRPWRTPFNGG-FHTEKVASRIRL 270
Query: 439 ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVID---RMWASGGC--LAGLV 493
+ RE ++ + Q+ V++A++ L +T+W++NK +L VI+ R+ G L+
Sbjct: 271 VKGNREHVRKLTQKQMPKVYKAINALQNTQWQINKDVLAVIEEVIRLDLGYGVPSFKPLI 330
Query: 494 DQEDVP---------------LPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIEL 538
D+E+ P L E + + + WK + +++ S+ +
Sbjct: 331 DKENKPANPVPVEFQHLRGRELKEMLSPEQWQQFINWKGECARLYTAETKRGSKSAAVVR 390
Query: 539 KLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPL-GKAGLH 597
+ ARK E Y+ + +D R R Y L+ +DL + +L F EG P+ G L
Sbjct: 391 MVGQARKYSAFESIYFVYAMDSRSRVYVQSSTLSPQSNDLGKALLRFTEGRPVNGVEALK 450
Query: 598 WLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIF-----DSADRPLEGRRWWLGAEDPFQ 652
W I+ ANL+ G DK +++ RV+ N LD+ F D A PL +W A+ P++
Sbjct: 451 WFCINGANLW--GWDKKTFDVRVS---NVLDEEFQDMCRDIAADPLTFTQW-AKADAPYE 504
Query: 653 CLATCINLSEALR---SPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGD 709
LA C ++ L + +H+PVH DGSC+G+QHY+A+ RD++GA AVNL D
Sbjct: 505 FLAWCFEYAQYLDLVDEGRADEFRTHLPVHQDGSCSGIQHYSAMLRDEVGAKAVNLKPSD 564
Query: 710 KPADVYSGIAARVLE--IMRADADKDPATYPYASCA------RLLINQVD-----RKLVK 756
P D+Y +A V++ + DAD D T+ S R + + D R L K
Sbjct: 565 APQDIYGAVAQVVIKKNALYMDAD-DATTFTSGSVTLSGTELRAMASAWDSIGITRSLTK 623
Query: 757 QTVMTSVYGVTYIGARDQI------------KKRLKE-RCA-----IEDDSK--LFGAAC 796
+ VMT YG T + R+ + +K + E R A EDD + L A
Sbjct: 624 KPVMTLPYGSTRLTCRESVIDYIVDLEEKEAQKAVAEGRTANKVHPFEDDRQDYLTPGAA 683
Query: 797 YAAKTTLT--ALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH 854
Y T L ++ E+ +A M + + A+ A N+ + +T P G + Q
Sbjct: 684 YNYMTALIWPSISEVVKAPIVAMKMIRQLARFAAKRNEGLMYTLPTGFILEQKIMATEML 743
Query: 855 LIRTSLQ---TLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGL-SFAG 910
+RT L ++LQ ETD V A PNFVH D SH+++T G+ S A
Sbjct: 744 RVRTCLMGDIKMSLQVETDIVDEAAMMGAAAPNFVHGHDASHLILTVCELVDKGVTSIAV 803
Query: 911 VHDSYWTHACDVDQMNRILREKFVELY-EQPILEDLLASFQKQFPKLNFPPLPERGDFDL 969
+HDS+ THA + + L+ + V +Y + L+ LL + ++ +PE+G+FDL
Sbjct: 804 IHDSFGTHADNTLTLRVALKGQMVAMYIDGNALQKLLEEHEVRWMVDTGIEVPEQGEFDL 863
Query: 970 RDVLESPYFF 979
++++S Y F
Sbjct: 864 NEIMDSEYVF 873
>sp|P33540|RPOP_NEUCS Probable DNA-directed RNA polymerase OS=Neurospora crassa PE=3 SV=1
Length = 896
Score = 193 bits (490), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 160/582 (27%), Positives = 269/582 (46%), Gaps = 71/582 (12%)
Query: 409 MPMLVPPLNWRGYNR------GGHFFLPSYVMRTHGAR--QQRETIKMTPRSQLEPVFQA 460
+PM++PPL W+ + GG + +R + + + MT +L A
Sbjct: 284 LPMIIPPLEWKIDDNEKIIEYGGTILNNKHRIRPLRTKSVENSDANDMTYNKEL---VDA 340
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVK 520
++ + +N +IL I R D++D + K D + ++ K
Sbjct: 341 VNFKSKIPYTINLKILDFITRDEFINR------DKKDNVIIYKHIHPDSALLGEYMKDRK 394
Query: 521 TAKKQNSEKHSQRCDIELKL-SVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLC 579
K H+ + + S+A+ MKD + FY +D+RGR Y LN G +L
Sbjct: 395 NPKISEITTHNSKFLYHSSIISIAKLMKDVKEFYMTVFIDWRGRFYTSSCALNIQGGELA 454
Query: 580 RGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLE 639
R +L F+EG L GL LKI+ AN A G+DK S E R+ + E +L I D ++
Sbjct: 455 RSLLLFKEGQKLNDIGLKALKIYTAN--AFGLDKRSKEERLDWVEQNLHKIID-----ID 507
Query: 640 GRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLG 699
W A++P LA + L P+ ISH+P+ MD +CNGLQH +A+ D +
Sbjct: 508 NYEIWREADEPLLFLACALELKGYNEDPN---FISHLPILMDATCNGLQHLSAMVNDFVL 564
Query: 700 AAAVNLVG---GDKPADVYSGIAARV-LEIMRADADKDPATYPYASCARLLINQVDRKLV 755
A VNL+ D P D+YS + + EI+ A +Y + + R+ V+R LV
Sbjct: 565 AEKVNLLKSTENDNPRDLYSEVIPHIKQEILEA-----SKSYEHTNLERI---NVERCLV 616
Query: 756 KQTVMTSVYGVTYIGARDQIKKRLKER-----------CAIEDD----SKLFGA--ACYA 798
K+ +MT YG T G DQI + ++ I+ D +F
Sbjct: 617 KRGLMTITYGATERGIYDQIVSKFFQKDEWNKTVGLHFVCIDSDIAPKDVVFTQKNILLL 676
Query: 799 AKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRT 858
+K +L ++ ++M + KV+ + V W TP GL + Q Y++ ++ T
Sbjct: 677 SKIIYNSLFKIHPNLNTLMVYFNSIVKVLCELDLPVNWVTPYGLVIQQKYNKFTKYNETT 736
Query: 859 SLQT----LALQR-ETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAG--LSFAGV 911
+ + L L++ +T + ++Q AF PNFVHS+DGS++++ + G ++FA +
Sbjct: 737 YVASKRYKLVLRKADTTSISKQKQIQAFIPNFVHSMDGSNIVLLINTIRDEGRKINFASI 796
Query: 912 HDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF 953
HD + THA D ++ +++ F+ +Y +SF ++F
Sbjct: 797 HDCFATHANDTAWLSWYVKQSFIRIYSD-------SSFLRRF 831
>sp|P22372|RPOP_CLAPU Probable DNA-directed RNA polymerase OS=Claviceps purpurea PE=3
SV=1
Length = 936
Score = 154 bits (388), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 150/666 (22%), Positives = 290/666 (43%), Gaps = 99/666 (14%)
Query: 323 DSKPWGQDAL-VKVGCRLIQLLMETAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKG 381
D+K + DA + +G +LI++L+E+ + + + D H++ + T+E K
Sbjct: 250 DNKMFFDDAFYLHLGAKLIEILIESDLLALTLVKFKDES--------HSVLTLTEEVAKA 301
Query: 382 RRYGVIECDPLVRKGLEKTGRHMIIPYMPMLVPPLNWRGYNRGGHF-----FLPSYVMRT 436
+ PL +PM+V P + GG+ +L S + +
Sbjct: 302 IPTNKVVLAPLK---------------LPMIVAPKPYSKEEHGGYLLNDFDYLDSLLTKK 346
Query: 437 HG----ARQQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVI--DRMWASGGCLA 490
+R Q + I ++++++ + +T +++NK++L + D +++ L
Sbjct: 347 LNMNDISRIQEKNI----------IYESINKMMATAFQINKKLLKYLLEDYVFSKLLKLE 396
Query: 491 GLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEE 550
G +++ E N D K ++ + SQ+ + + +A ++
Sbjct: 397 GDDLYKNITQIEIDNMD------------KRDNQKYQQYLSQKLLRDYIIDIATVFQNVP 444
Query: 551 GFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKA---GLHWLKIHLANLY 607
Y+P LD RGR YP+ Y ++ S+L + +L F + ++ + +LK + A +
Sbjct: 445 ELYFPLKLDHRGRLYPITAYFHYQSSELAKALLLFAIPDTIERSDSISIDYLKAYGATCF 504
Query: 608 AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCIN---LSEAL 664
+DK SY+ R+ + + + ++I + + L AE+ F LA C+ L++ L
Sbjct: 505 GNKLDKKSYDKRLQWVDANWENIINYRNNVLLEL-----AENKFMFLAYCLEIERLNQFL 559
Query: 665 RSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDK---PADVYSGIAAR 721
S E+ +++P+ +DG+CNG QH L + + +NL G K P+D YS + +
Sbjct: 560 NDDSIENFKTYLPLQLDGTCNGFQHIVLLSNEVKLYSQLNLDGKSKNQDPSDFYSFMINQ 619
Query: 722 VLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYG------------VTYI 769
+ + D S RL+ + R +KQ +MT Y I
Sbjct: 620 LNIHLLNKKDVSTDKEDIESYDRLINLGLSRANIKQAIMTKPYNAKDFTVAKYIIETLLI 679
Query: 770 GARDQI---KKRLKERCAIEDDSKLFGAACY-----AAKTTLTALGEMFEAARSIMSWLG 821
+ D+ K + C + + + AC+ AK L + +S++ +L
Sbjct: 680 ASEDKYIDEKGITRTECWYKVNETMTNVACFRDIYLLAKCINEILFLNYPQIKSLLEYLN 739
Query: 822 ECAKVIASENQAVRWTTPLGLPVVQPY--HQLGRHLIRTSLQTLALQRETDKVMVK--RQ 877
++++ N + W+ P GL V Q Y +L + T L T + TDK+ + +Q
Sbjct: 740 SISEIMLKLNLPITWSLPTGLEVHQQYMRSKLKKTKPYTYLDTSLTLKITDKIKMDKVKQ 799
Query: 878 RTAFPPNFVHSLDGSHMMMTAVACKRA----GLSFAGVHDSYWTHACDVDQMNRILREKF 933
+ A PN +HSLD + ++M A ++ ++F VHD Y A +D + LR +
Sbjct: 800 QIALMPNLIHSLDAASLIMLYFAFNKSIGSGVVNFYSVHDCYGVTAKYIDLLISQLRAVY 859
Query: 934 VELYEQ 939
+ELY +
Sbjct: 860 IELYSK 865
>sp|P33539|RPOP_AGABT Probable DNA-directed RNA polymerase OS=Agaricus bitorquis PE=3 SV=1
Length = 1102
Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 149/592 (25%), Positives = 266/592 (44%), Gaps = 91/592 (15%)
Query: 406 IPYMPMLVPPLNWRGYNRGGHFF--LPSYVMRTHGARQQRETIKMTPRSQLEP---VFQA 460
I +PML P R + G +F + S H + K R E ++ +
Sbjct: 474 IVQLPMLTEP---RKISSDGLYFPYINSDTTNLHLFEGELIKGKYNLRDHTEASEMLYSS 530
Query: 461 LDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDD---ETEIKKWKW 517
++ L S K+++NK +L I W D +D L + N ET+ K+
Sbjct: 531 INYLNSIKFKINKAMLNFILAEW----------DNKDSKLFKGYNMLKPILETDSKE--- 577
Query: 518 KVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSD 577
+K K ++ K++ +I +S+A KD E FY P +DFRGR YP+ Y+++ G D
Sbjct: 578 -IKEEKVSSNSKYTLYSNI---ISLASLYKDNE-FYLPVYVDFRGRVYPLSNYISYQGGD 632
Query: 578 LCRGVLEFEEGH-PLGKAGLHWLKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADR 636
L R ++ F + L +G L ++LANL G DKL + R+ + + + +S +
Sbjct: 633 LARSLILFADTKCVLNNSGKECLNVYLANL--AGYDKLPWSERLTKVDGIIKEYLESNE- 689
Query: 637 PLEGRRWWLGAED----PFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAA 692
+ ++ D PFQ ++ I ++ L +P++ IS+ P+ D SC+G+QH AA
Sbjct: 690 -ISNTKYIEDNIDKISEPFQFIS--IMYAKLLSISNPKANISN-PILFDASCSGIQHIAA 745
Query: 693 LGRDKLGAAAVNLVGG------DKPADVYSGIAARVLE-IMRADADKDPATYPYASCARL 745
L +K A+ VNL D P D Y+ ++ + ++ +D L
Sbjct: 746 LTLEKELASNVNLYTDSSNPKEDYPQDFYTYALEKIRDKLINSD------------ITEL 793
Query: 746 LINQVDRKLVKQTVMTSVYGVTYIGARDQ------IKKRLKERCAI---------ED--- 787
+++RK++K++VMT Y ++ G + +K LK R + +D
Sbjct: 794 RDIKLNRKIIKRSVMTIPYNISMAGIGEHLMEHFTVKTVLKYRYVVIPGSATISSKDVYL 853
Query: 788 DSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQP 847
D +G C K L + + R + ++ + N + W TP GL +
Sbjct: 854 DYSKYGQLC---KIIYFVLTKELPSLRLLSNYFESMIDIFVKLNIPITWVTPSGLKIKYT 910
Query: 848 YHQLGRHLIRTSL----QTLALQRETDKVMVKRQRTAFPPNFVHSLDGS--HMMMTAVAC 901
+ ++TS+ + ++ TD + V + +F PNF+HSLD S H+++ +V+
Sbjct: 911 NIKFKPQKVKTSVLNTSKITTIKLPTDSLDVLSTKRSFMPNFIHSLDASNVHLLLNSVSY 970
Query: 902 KRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQF 953
K L VHD + + A ++ ++ ++++ F+ +Y E L K F
Sbjct: 971 K--NLPVYTVHDCFASTANNMFKLEKLVKNAFINIYFND--EGYLLKLHKHF 1018
>sp|P33541|RPOP_NEUIN Probable DNA-directed RNA polymerase OS=Neurospora intermedia PE=3
SV=2
Length = 811
Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 143/623 (22%), Positives = 264/623 (42%), Gaps = 122/623 (19%)
Query: 409 MPMLVPPLNWRGYNRGGHFFL------PSYVMRTHGARQQRETIKMTPRSQLEPVFQALD 462
+PM+ PPL W RGG+ S V+ G+ R I +T + ++ ++
Sbjct: 243 LPMVCPPLPWGHGIRGGNLINLTDTQDESLVV---GSFHHRHKIAITDK-----LYNVIN 294
Query: 463 TLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTA 522
L + K+++N G L+ L ++ L NT +T I
Sbjct: 295 KLNAFKFKIN-------------GDLLSYLQNEGSFILDFYKNTKKDTYINNM------- 334
Query: 523 KKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGV 582
+ + +AR + FY N+D+RGR Y YL++ GS+L +
Sbjct: 335 ---------------ITIDIARTYLNTP-FYLNVNIDWRGRIYTQSFYLDYQGSELSLAL 378
Query: 583 LEFEEGHPLGKAGLHWLKIHLANLY--AGGVDKLSYEGRVAFTENHLDDIFDSADRPLEG 640
+ EG L + GL + ++ AN+Y G K S++ R + +LD+I + D
Sbjct: 379 INLFEGKKLDEKGLFFFYVYGANIYNDGGKFSKKSFQDRFNWVVENLDNII-AMD----- 432
Query: 641 RRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGA 700
+ + L AE P A C+ + + +P+ + + P+ +D +C+G+QH+AA+ D
Sbjct: 433 KEFILKAESPTLFAAFCLTMRKL--KENPDYPVFN-PIFLDATCSGVQHFAAMLLDLELG 489
Query: 701 AAVNLVG-GDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKLVKQTV 759
VNL+ G+ D YS + + + + A+K ++ + ++R L+K+ +
Sbjct: 490 KYVNLINSGESVNDFYSQLIPAINKAINESAEKKFKNLKFSDIS------LNRSLLKKVI 543
Query: 760 MTSVYGVTYIGARDQIKKRLK--ERCAIE--------------DDSKLFGAACYAAKTTL 803
MT Y VT G +Q+K +L+ E+ I + + +T
Sbjct: 544 MTKSYNVTTYGITEQLKSKLEKVEKIVISKGKEIKVYDYLVPTKNGDFVVLDTFEVETLA 603
Query: 804 TALGE----MFEAARSIMSWLGECAKVIASENQAVRWTTPLGLPVVQPYH-----QLGRH 854
+ + + F SI +L AK+ + + W+TP GL + Q Y+ +L +
Sbjct: 604 SIINDNIFNQFPKLHSIYDYLTRLAKIYLKLDIPLSWSTPDGLELTQRYNLSKVKKLTIN 663
Query: 855 LIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLSFAGVHDS 914
+ + +T L+ ++ +R+ A PN +HSLD SH+ M + L +H+
Sbjct: 664 FLGKN-RTAVLRSWVNEKDSRREVQAIIPNIIHSLDASHLTMIIDSWDSYILP---IHEC 719
Query: 915 YWTHACDVDQMNRILREKFVELY-EQPILEDLLASFQ----------------------- 950
+ TH D+ ++ +RE F+ LY + L + F+
Sbjct: 720 FGTHPNDMYKLAEQVRECFILLYSKNDFLNKIDYKFRENLKDYKIEIVNKNGEDFVKIKG 779
Query: 951 -KQFPKLNFPPLPERGDFDLRDV 972
K++ L P LP+ G+ ++ D+
Sbjct: 780 NKRYEYLPLPVLPQMGELNVEDI 802
>sp|O03685|RPOP_GELSP Probable DNA-directed RNA polymerase OS=Gelasinospora sp. (strain
G114) PE=3 SV=1
Length = 831
Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 107/429 (24%), Positives = 193/429 (44%), Gaps = 48/429 (11%)
Query: 552 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHWLKIHLANLY--AG 609
FY N+D+RGR Y YL + GS+L ++ EG L + GL + ++ AN+Y G
Sbjct: 368 FYLNVNIDWRGRIYTQSFYLGYQGSELSLALINLFEGQKLDEEGLFFFYVYGANIYNEGG 427
Query: 610 GVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSP 669
K S++ R + +LD+I + D+ + L AE P A C+ + + +P
Sbjct: 428 KFSKKSFQDRFNWVVENLDNII-AMDKD-----FILKAESPTLFAAFCLTMRKL--KENP 479
Query: 670 ESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVG-GDKPADVYSGIAARVLEIMRA 728
+ + + P+ +D +C+G+QH+AA+ D VNL+ G+ D YS + + + +
Sbjct: 480 DHPVFN-PIFLDATCSGVQHFAAMLLDLELGKYVNLINSGESVNDFYSQLIPAINKAINE 538
Query: 729 DADKDPATYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLK--ERCAIE 786
A+K ++ + ++R L+K+ +MT Y VT G +Q+K +L+ E+ I
Sbjct: 539 SAEKKLKNVKFSDIS------LNRSLLKKVIMTKSYNVTTYGITEQLKSKLEKVEKIIIS 592
Query: 787 --------------DDSKLFGAACYAAKTTLTALGE----MFEAARSIMSWLGECAKVIA 828
+ K + +T + + + F SI +L K+
Sbjct: 593 KGKEIKVYDYLVPTKNGKFVVLDTFEVETLASIINDNIFNQFPKLHSIYEYLTRLTKIYL 652
Query: 829 SENQAVRWTTPLGLPVVQPYHQLGRHLIRTSL----QTLALQRETDKVMVKRQRTAFPPN 884
+ + +TP GL + Q Y+ + + +T L+ +R+ A PN
Sbjct: 653 KLDIPISCSTPDGLELTQRYNLSKVQKLTINFLGKNRTAVLRSWVSDKDSRREVPAIIPN 712
Query: 885 FVHSLDGSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILED 944
+HSLD +H+ M + L +HD + TH D+ ++ +RE F+ LY + D
Sbjct: 713 IIHSLDAAHLPMLIDSWDSYILP---IHDCFGTHPNDMFKLAEQVRECFILLYSK---ND 766
Query: 945 LLASFQKQF 953
L+ +F
Sbjct: 767 FLSKIDSKF 775
>sp|Q01521|RPOP_PODAS Probable DNA-directed RNA polymerase OS=Podospora anserina PE=3
SV=1
Length = 948
Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 140/585 (23%), Positives = 255/585 (43%), Gaps = 72/585 (12%)
Query: 393 VRKGLEKTGRHMIIPY-MPMLVPPLNWRGYNRGGHFFLPSYVMRTHGARQQRETIKMTPR 451
+ K L + G ++P +PM+V P + GG+ Y+ + +++ T
Sbjct: 325 ILKVLPEDGTLFVLPKKIPMIVKPKPYTTRVNGGYLSNDLYI-NENIVKEKWNLRDNTQI 383
Query: 452 SQLEPVFQALDTLGSTKWRVNKRILGVIDRMWASGGCLAGLVDQEDVPLPEKPNTDDETE 511
+F ++ L S +++N +L I+ ++ S L+D P P
Sbjct: 384 LHFNQIFDLVNNLSSIGYKINTDVLDFIE-LYGSDYFKNELID----PRYSHPLLKKSKL 438
Query: 512 IKKWKWKVKT--AKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHP 569
KK K ++ + AKK+ E L +A ++ F+ P N DFRGR Y
Sbjct: 439 TKKEKMELDSFLAKKELQEN---------ILGLAEIFRNIPEFFIPVNADFRGRVYCTPE 489
Query: 570 YLNHLGSDLCRGVLEFEEGHPLGK---AGLHWLKIHLANLYAGGVDKLSYEGRVAFTENH 626
YLN+ +DL + +L F + + K L +LKI+ + + G+DKLS R+ + + +
Sbjct: 490 YLNYQSTDLAKSLLLFSKPGRMYKKDYIALSYLKIYGGS--SFGLDKLSANDRIKWVDKN 547
Query: 627 LDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTI---SHIPVHMDGS 683
L++I + + L A++ F LA CI + L +++P+ MD +
Sbjct: 548 LNNIKNYRNGKLIKE-----AKNKFLFLAFCIEYNRYLNCLDNHDVSWFDTYLPIQMDAT 602
Query: 684 CNGLQHYAALGRDKLGAAAVNL---VGGDKPADVYSGIAARVLEIMRADADKDPATYPYA 740
CNG QH + L D + +NL D P D Y+ + ++ ++ + ++ P
Sbjct: 603 CNGFQHLSLLSLDSNLSKELNLSESTWDDVPKDFYTFLVVCFIDYLKTELLENKNLTPKE 662
Query: 741 SCA--RLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYA 798
S + RL+ ++ R+++K+ +MT Y V+ + I +E +ED+S Y
Sbjct: 663 SESYNRLINMKIIREIIKKGIMTIPYNVSNFSLINYI----REGFELEDNS----LEWYI 714
Query: 799 AKT---------TLTALG--------EMFEAARSIMSWLGECAKVIASENQAVRWTTPLG 841
K T LG E F ++ +L + A+V + WT P G
Sbjct: 715 YKNEPSIRLKSLDFTVLGKGLRKVLHEKFHKLDLLLKYLDQVARVCTLLEIPIIWTLPTG 774
Query: 842 LPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVK------RQRTAFPPNFVHSLDGSHMM 895
L V Q Y + R +R + ++ + KV+ K +Q TAF PN VHSLD + +
Sbjct: 775 LVVRQSY--MIRDEVRIKPFNHSNKKFSMKVLNKTQFNNSKQITAFMPNLVHSLDAASLT 832
Query: 896 MTAVACKRAGL---SFAGVHDSYWTHACDVDQMNRILREKFVELY 937
+ + + + +HD + A ++ + +L+ +++LY
Sbjct: 833 LLLDFYFKESIDVKNIYTIHDCFAVPANKMECLISLLKLTYIKLY 877
>sp|Q8FWG3|BIOB_BRUSU Biotin synthase OS=Brucella suis biovar 1 (strain 1330) GN=bioB
PE=3 SV=1
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|A9WYH2|BIOB_BRUSI Biotin synthase OS=Brucella suis (strain ATCC 23445 / NCTC 10510)
GN=bioB PE=3 SV=2
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|Q8YBW1|BIOB_BRUME Biotin synthase OS=Brucella melitensis biotype 1 (strain 16M / ATCC
23456 / NCTC 10094) GN=bioB PE=3 SV=2
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|C0RL26|BIOB_BRUMB Biotin synthase OS=Brucella melitensis biotype 2 (strain ATCC
23457) GN=bioB PE=3 SV=2
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|A9MBD6|BIOB_BRUC2 Biotin synthase OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
GN=bioB PE=3 SV=2
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|Q577P8|BIOB_BRUAB Biotin synthase OS=Brucella abortus biovar 1 (strain 9-941) GN=bioB
PE=3 SV=2
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|Q2YKB8|BIOB_BRUA2 Biotin synthase OS=Brucella abortus (strain 2308) GN=bioB PE=3 SV=1
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|B2SBF0|BIOB_BRUA1 Biotin synthase OS=Brucella abortus (strain S19) GN=bioB PE=3 SV=2
Length = 328
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 23/178 (12%)
Query: 520 KTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNH------ 573
++A +N K S+ +IE L ARK K Y +R P L H
Sbjct: 72 QSASAENGLKASKLMEIETVLEEARKAKAAGATRYCMGAAWRSPKDRDMPALTHMIESVK 131
Query: 574 -LGSDLCR--GVLEFEEGHPLGKAGLHWLKIHL---ANLYAGGVDKLSYEGRVAFTENHL 627
+G + C G+L+ ++ L AGL + ++ Y + S+E R+ + L
Sbjct: 132 AMGLETCMTLGMLDSDKAEKLADAGLDYYNHNIDTSERFYPAVITTRSFEDRL----DTL 187
Query: 628 DDIFDSADRPLEGRRWWLG--AEDPFQCLATCINLSEALRSPSPESTISHIPVHMDGS 683
++ ++ + G LG AED L T NL E PES ++ + M G+
Sbjct: 188 ANVRNAGIKVCSGGILGLGEEAEDRIDMLVTLANLPE-----PPESVPINMLIPMPGT 240
>sp|Q07404|UREH_BACSB Urease accessory protein UreH OS=Bacillus sp. (strain TB-90)
GN=ureH PE=3 SV=1
Length = 228
Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 176 LPYVKSLFLGWFEPLRDAIAK---DQATAQDKWKHMTYAPYFNNLPADMMAVITMHKLVG 232
+PYVKSLF+G L + A +T + W+ + Y +F ++ +++ L+G
Sbjct: 124 IPYVKSLFIGIIHGLAGSAAMVLLTMSTVEKAWEGLLYILFFG--AGTVLGMLSFTTLIG 181
Query: 233 LLMT-NAGEVRVVQAACQI 250
+ T +A ++R+ A QI
Sbjct: 182 IPFTLSARKIRIHNAFIQI 200
>sp|Q6DIV2|TTC38_XENTR Tetratricopeptide repeat protein 38 OS=Xenopus tropicalis GN=ttc38
PE=2 SV=1
Length = 469
Score = 33.9 bits (76), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 568 HPYLNHLGSDLCRGVLEFEEGH 589
H +NHLG+ LCR ++E++ GH
Sbjct: 368 HGLINHLGTPLCRALIEYDRGH 389
>sp|A4XLD9|RIMO_CALS8 Ribosomal protein S12 methylthiotransferase RimO
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=rimO PE=3 SV=1
Length = 440
Score = 33.9 bits (76), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 483 WASGGCLAGLV--DQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKL 540
WA L + +E P + P TDDET++K+++ + +K + E++ +R I K
Sbjct: 324 WAKFDRLGAFMYSQEEGTPAADLPQTDDETKVKRYERILNLQRKISLERNRKR--ISKKY 381
Query: 541 SVARKMKDEEGFY 553
V + +D FY
Sbjct: 382 EVVIEGRDRNNFY 394
>sp|Q4ZG55|GREB1_HUMAN Protein GREB1 OS=Homo sapiens GN=GREB1 PE=2 SV=1
Length = 1949
Score = 33.5 bits (75), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 240 EVRVVQAACQIGEAIENEARIQSFFKSTK---KKNATDNNLEGDSEPLT---NDPEKLIK 293
++R++ ++C + A+E E + ++F S + +K A + LE D+E L+ N+ E+L
Sbjct: 1047 DLRLINSSCLVRTALEQELGLAAYFVSNEVPLEKGARNEALESDAEKLSSTDNEDEELGT 1106
Query: 294 EQEKLKKR 301
E +KR
Sbjct: 1107 EGSTSEKR 1114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 367,291,642
Number of Sequences: 539616
Number of extensions: 16009298
Number of successful extensions: 44317
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 44115
Number of HSP's gapped (non-prelim): 73
length of query: 980
length of database: 191,569,459
effective HSP length: 127
effective length of query: 853
effective length of database: 123,038,227
effective search space: 104951607631
effective search space used: 104951607631
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)