Query 002019
Match_columns 980
No_of_seqs 246 out of 443
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 08:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1msw_D DNA-directed RNA polyme 100.0 3E-206 1E-210 1857.8 55.9 792 137-980 27-883 (883)
2 3spa_A Mtrpol, DNA-directed RN 100.0 2E-196 8E-201 1770.7 57.2 789 132-980 294-1134(1134)
3 3q23_A Virion RNA polymerase; 97.6 0.0002 6.8E-09 85.8 11.8 303 455-776 338-702 (1118)
4 4dfk_A DNA polymerase I, therm 66.1 4.1 0.00014 48.1 4.4 209 659-935 301-517 (540)
5 2kfn_A Klenow fragment of DNA 65.6 5.1 0.00017 47.8 5.2 210 659-936 365-584 (605)
6 3pv8_A DNA polymerase I; DNA p 51.2 9 0.00031 45.7 3.9 198 675-936 363-571 (592)
7 1bgx_T TAQ DNA polymerase; DNA 38.3 21 0.00073 44.2 4.4 198 675-935 604-809 (832)
8 1x9m_A DNA polymerase; DNA plo 22.3 58 0.002 39.4 4.3 93 675-816 463-559 (698)
9 1gdt_A GD resolvase, protein ( 17.2 2.1E+02 0.0071 28.0 6.4 60 891-951 73-132 (183)
10 1d2v_A Myeloperoxidase; heme-p 11.4 47 0.0016 30.5 -0.2 11 679-689 9-19 (104)
No 1
>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} SCOP: e.8.1.3 PDB: 1h38_A 1cez_A 1qln_A* 1s0v_A* 1s76_D* 1s77_D* 4rnp_A 3e2e_A* 3e3j_C* 1aro_P 2pi4_A* 2pi5_A
Probab=100.00 E-value=3.2e-206 Score=1857.77 Aligned_cols=792 Identities=29% Similarity=0.495 Sum_probs=689.1
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHHHhh-hccCcccccccc
Q 002019 137 KYY-MLKRRQIKIETEAWEQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQATAQ-DKWKHMTYAPYF 214 (980)
Q Consensus 137 ~~~-~l~~RQ~~lE~~~~~~a~~~~r~~~~~~~~~g~a~~~~~~~~l~~~w~~~l~~~I~~e~~~~~-~~~~r~~y~p~L 214 (980)
.|+ .|++||++||++++++|++||++.+++++++|+++++|++++++.+|+++|+++|+++++..+ +.+.++.|+|||
T Consensus 27 ~~~~~l~~rQ~~lE~e~~~~a~~r~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~l~~~i~~~~~~~~~~~g~~~~~~~~L 106 (883)
T 1msw_D 27 HYGERLAREQLALEHESYEMGEARFRKMFERQLKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKRPTAFQFL 106 (883)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTTTTT
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCChhhHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHH
Confidence 344 568999999999999999999999999999999999999999999999999999999988766 356789999999
Q ss_pred ccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCCCCCCCChHHHHHH
Q 002019 215 NNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNLEGDSEPLTNDPEKLIKE 294 (980)
Q Consensus 215 ~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~ave~E~~~~~~~~~~~k~~~~~~~~~~~~~~l~~~~~~~~~~ 294 (980)
++|+||++|+|||+++|+++++ ++++++++++.+||++||+|++++++.++.++++.. +.
T Consensus 107 ~~l~~e~lA~iti~~~l~~~~~-~~~~~~~~~~~~iG~ave~E~~~~~~~~~~~~~~~~-------------------~~ 166 (883)
T 1msw_D 107 QEIKPEAVAYITIKTTLACLTS-ADNTTVQAVASAIGRAIEDEARFGRIRDLEAKHFKK-------------------NV 166 (883)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHH-CSCCBHHHHHHHHHHHHHHHHHHHHHHHSSCSSHHH-------------------HT
T ss_pred HhCCHHHHHHHHHHHHHHHhcc-cCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------------------HH
Confidence 9999999999999999999987 467899999999999999999999988776543321 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hhhC----CCCCCCCCHHHHHHHHHHHHHHHHHH-ccccCCCCCCCCCCCcccCceE
Q 002019 295 QEKLKKRVTSLIKKQKLQQVRG-IVKG----HVDSKPWGQDALVKVGCRLIQLLMET-AYIQPPVDQLGDSPPDIRPAFV 368 (980)
Q Consensus 295 ~~~~r~~~~~~~~~~~~~~~~~-~~~~----~~~~~~W~~~~~~~vG~~Li~~l~~~-~~i~~~~~~~~~~~~~~~paF~ 368 (980)
.+.++++.+...++...+.+.+ .... ..++.+|+..++++||++|+++|+++ +.++++..
T Consensus 167 ~~~l~~~~~~~~k~~~~~~~~~~~~~~g~~~~~~~~~W~~~~~~~vG~~Li~~l~~~~~~~~~~~~-------------- 232 (883)
T 1msw_D 167 EEQLNKRVGHVYKKAFMQVVEADMLSKGLLGGEAWSSWHKEDSIHVGVRCIEMLIESTGMVSLHRQ-------------- 232 (883)
T ss_dssp SHHHHHSCSHHHHHHHHHHHHHHSTTTTTTTTCCCCCCCTTHHHHHHHHHHHHHHHHCTTEEEECC--------------
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhhhccccccCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceecc--------------
Confidence 2233333333333333333333 1121 36789999999999999999999995 56643221
Q ss_pred EEeeecccccC-CCeEEEEEEeCHHHHHHHHhcc---ccccCCCCceeeCCcCcccCCCcccccc---Ccceeeccchhh
Q 002019 369 HTLKSFTKEAL-KGRRYGVIECDPLVRKGLEKTG---RHMIIPYMPMLVPPLNWRGYNRGGHFFL---PSYVMRTHGARQ 441 (980)
Q Consensus 369 h~~~~~~~~~~-~~~~~gvi~~~~~~~~~l~~~~---~~~~~~~lPMlvpP~pW~~~~~GGYl~~---~~~l~R~~~~~~ 441 (980)
..| +++++|+|++||.+.+.+.+.. ..+.+.+|||||||+||+++.+||||+. +..++|++.
T Consensus 233 --------~~~~~~k~~~~i~~~~~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~~GGYl~~~~~~~~~ir~~~--- 301 (883)
T 1msw_D 233 --------NAGVVGQDSETIELAPEYAEAIATRAGALAGISPMFQPCVVPPKPWTGITGGGYWANGRRPLALVRTHS--- 301 (883)
T ss_dssp ----------------CCEEEECHHHHHHHHHHHHHHTTSCCCCCCBSSCCBCCSSSBSCBSSSCCSSCCBSEECSS---
T ss_pred --------ccCCCCceeeEEEeCHHHHHHHhhcccchhhcCCCCCceeeCCccCCCCCCCCccCCCcccchhhcccC---
Confidence 112 2578899999999999997542 3345569999999999999999999974 345677653
Q ss_pred HHHHHHcCCCCChhhHHHHHHhhcCcccEechhHHHHHHHHHh-cCCCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHH
Q 002019 442 QRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWA-SGGCLAGLVDQEDVPLPEKPNTDD--ETEIKKWKWK 518 (980)
Q Consensus 442 q~~~l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~-~g~~~~~l~~~~~~p~P~~p~~~d--~~~~~~wk~~ 518 (980)
+.++++..+++++.||++||+||+|||+||++||+||+++|+ +|+++++||+..+.|+|++|++.| ++++++|++.
T Consensus 302 -~~~~~~~~~~~l~~v~~aLN~L~~t~w~IN~~vL~vi~~~~~~~g~~~~~ip~~~~~~~P~~p~~~d~~~~~~~~~k~~ 380 (883)
T 1msw_D 302 -KKALMRYEDVYMPEVYKAINIAQNTAWKINKKVLAVANVITKWKHCPVEDIPAIEREELPMKPEDIDMNPEALTAWKRA 380 (883)
T ss_dssp -TTHHHHTTTCCCHHHHHHHHHHHTCCEEECHHHHHHHHHHTTCSSCSSTTCCCSSCCCCCCC-----------CCTTHH
T ss_pred -HHHHHhccccchHHHHHHHHHhccCCeEecHHHHHHHHHHHhhcCCcccCCCCcCcCCCCCCCCccccCHHHHHHHHHH
Confidence 244555677899999999999999999999999999999999 999999999988899999987543 6788999999
Q ss_pred HHHHHHHHhHhhhhhhhHHHHHHHHHhccCCCceeecccCCCCCcccCCCCCCCCCCccchhhhhhcccCCcCcccchHH
Q 002019 519 VKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEGHPLGKAGLHW 598 (980)
Q Consensus 519 ~~~~~~~~~~~~s~r~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~FaegkpLg~~Gl~W 598 (980)
++++++.++++||+||+++++|++|++|+|++.||||||+|||||+||+| ||||||+|+|||||+||+|+|||++||+|
T Consensus 381 ~~~~~~~~~~~~S~r~~~~~~L~iA~~f~~~~~fYfPhnlDFRGR~Yp~p-~Ln~~GsDl~RsLL~FaegkpLG~~Gl~W 459 (883)
T 1msw_D 381 AAAVYRKDKARKSRRISLEFMLEQANKFANHKAIWFPYNMDWRGRVYAVS-MFNPQGNDMTKGLLTLAKGKPIGKEGYYW 459 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSSSCSCBBCCEEEETTSCEEESS-SSCTTSCHHHHHHEEESSCEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeecccCCCCcCCCCC-CCCCCcchHHHHHHHhccCCccChhHHHH
Confidence 99999999999999999999999999999988999999999999999995 99999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHhhHHHHHHhhcCCcCCchhhhcCCChHHHHHHHHHHHHhhcCCCCCCccccccc
Q 002019 599 LKIHLANLYAGGVDKLSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLATCINLSEALRSPSPESTISHIPV 678 (980)
Q Consensus 599 LkIhlAN~~g~G~DK~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~P~QfLA~C~El~~a~~~~~p~~y~S~lPV 678 (980)
||||+||+| |+||+||+||++||++|+++|++||+|||+ .+||++||+||||||+|+||++|+++|+ +|+|||||
T Consensus 460 LkIhlAN~~--G~dK~s~~eRi~wv~~n~~~I~dsA~~Pl~-~~wW~~Ad~PwQfLA~C~El~~a~~~~~--~y~S~lPV 534 (883)
T 1msw_D 460 LKIHGANCA--GVDKVPFPERIKFIEENHENIMACAKSPLE-NTWWAEQDSPFCFLAFCFEYAGVQHHGL--SYNCSLPL 534 (883)
T ss_dssp HHHHHHHHT--TCCSSCHHHHHHHHHHTHHHHHHHHHCHHH-HCGGGGSSSHHHHHHHHHHHHHHHHHCT--TCEECCCE
T ss_pred HHHHHHHhc--CCCcCCHHHHHHHHHHHHHHHHHHhcCccc-chHHHcCCcHHHHHHHHHHHHHHHhCCC--cccccccc
Confidence 999999999 899999999999999999999999999998 5899999999999999999999999876 89999999
Q ss_pred cccCCcchhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCC-------Cc------------c
Q 002019 679 HMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPAT-------YP------------Y 739 (980)
Q Consensus 679 ~qDgSCnGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~-------~~------------~ 739 (980)
||||||||||||||||||..||++|||+|+|+|||||+.||+.|.+.+++|+.++.+. .+ .
T Consensus 535 hqDgSCnGLQHyAALgrD~~ga~~VNL~psd~PqDvYs~Va~~v~~~~~~da~~g~~~~~~~~~d~~~g~i~e~~~~~~~ 614 (883)
T 1msw_D 535 AFDGSCSGIQHFSAMLRDEVGGRAVNLLPSETVQDIYGIVAKKVNEILQADAINGTDNEVVTVTDENTGEISEKVKLGTK 614 (883)
T ss_dssp EEECSCHHHHHHHHHHTCTTHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHTTSCCCCCCCSSSSSSCCSSCCCCCCHH
T ss_pred ccCCCCcHHHHHHHHhcChhhhhHhCCCCCCCCcchHHHHHHHHHHHHHHHHhcccccccccccccccccchhhcccchh
Confidence 9999999999999999999999999999999999999999999999999998775321 00 1
Q ss_pred hHHHHHhhccCccccccccceeeecccchhchHHHHHHHHhhccCCCCcchh----hhhhhHHHHHHHHHHHHHHHHHHH
Q 002019 740 ASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKL----FGAACYAAKTTLTALGEMFEAARS 815 (980)
Q Consensus 740 ~~~a~~l~~~i~RKvvKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~----~~~a~yla~~i~~ai~e~f~~A~~ 815 (980)
...+++|.++|+||+|||||||+|||||++|+++||+++|+++++..++... ..+|+|+|++||+||+++|++|+.
T Consensus 615 ~l~~~~l~~~i~RKvvKqtVMT~vYGvT~~Ga~~qI~~~l~~~~~~~~~~~~~~~~~~~a~yla~~i~~ai~~~f~~a~~ 694 (883)
T 1msw_D 615 ALAGQWLAYGVTRSVTKRSVMTLAYGSKEFGFRQQVLEDTIQPAIDSGKGLMFTQPNQAAGYMAKLIWESVSVTVVAAVE 694 (883)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHGGGGTCCHHHHHHHHHHHTHHHHHHTSCCCSCSSHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHhcCCCHHHhccceeeeeeCCcchhhHHHHHHHHhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1246788999999999999999999999999999999999875422111122 378999999999999999999999
Q ss_pred HHHHHHHHHHHHHcC------------CCeEEEEcCCCCeEEEeeccCcceeEEeeeEEEE---EecCC---CcCchHhh
Q 002019 816 IMSWLGECAKVIASE------------NQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLA---LQRET---DKVMVKRQ 877 (980)
Q Consensus 816 im~WL~~~A~~i~~~------------~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~~~---l~~~~---d~vd~rKq 877 (980)
||+||++||++|++. +.||.|+||+||||+|||++.++++|+|.+|.++ +..++ +++|++||
T Consensus 695 im~wL~~~a~~i~~~v~~~~~~~~~~~~~pv~W~TPlGlpV~Q~Y~~~~~~~V~t~l~~~~~i~l~~~~~~~~~~d~~Kq 774 (883)
T 1msw_D 695 AMNWLKSAAKLLAAEVKDKKTGEILRKRCAVHWVTPDGFPVWQEYKKPIQTRLNLMFLGQFRLQPTINTNKDSEIDAHKQ 774 (883)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEECCCCEEEECTTSCEEEECCBCCSSCCEECSSSCEECCCCSCSSCCSCCBCHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccCCCeEEEECCCCCEEEEEecCCCceEEEEeecceeeEeeecccccccccchHHH
Confidence 999999999999998 9999999999999999999999999999998653 23333 35999999
Q ss_pred hccCCCcchhhhhhHHHHHHHHHHHHc-CC-cEEEeeccccCCCCChhHHHHHHHHHHHHhcCc-chHHHHHHHHHHhCC
Q 002019 878 RTAFPPNFVHSLDGSHMMMTAVACKRA-GL-SFAGVHDSYWTHACDVDQMNRILREKFVELYEQ-PILEDLLASFQKQFP 954 (980)
Q Consensus 878 ~~af~PNFIHSLDAsHmmlta~~~~~~-gi-~fa~VHDSfwTha~dvd~m~~ilRe~FV~Lys~-~il~~l~e~f~~~~~ 954 (980)
++|||||||||||||||||||++|.+. |+ +|++|||||||||||||.|+++|||+||+||++ |+|++|.++|..+|+
T Consensus 775 ~~af~PNFIHSLDAsHmmlta~~~~~~~gl~~fa~VHDsfwTha~dvd~m~~~lRe~FV~lys~~~~L~~l~~~~~~~~~ 854 (883)
T 1msw_D 775 ESGIAPNFVHSQDGSHLRKTVVWAHEKYGIESFALIHDSFGTIPADAANLFKAVRETMVDTYESCDVLADFYDQFADQLH 854 (883)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCEECSSEEEECGGGHHHHHHHHHHHHHHHHHHCCHHHHHHHHHSSTTT
T ss_pred hcCCCchhHhhHHHHHHHHHHHHHHHhcCCCceEEEeccccCCHhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 999999999999999999999999988 99 799999999999999999999999999999999 999999999999998
Q ss_pred C---CCCCCCCCCCCCChhhhccCCCCCC
Q 002019 955 K---LNFPPLPERGDFDLRDVLESPYFFN 980 (980)
Q Consensus 955 ~---~~~p~~P~~G~lDl~~Vl~S~YfF~ 980 (980)
+ .+||++|++|+|||++|++|+|||+
T Consensus 855 ~~~~~~~p~~P~~G~ldl~~Vl~S~YfFs 883 (883)
T 1msw_D 855 ESQLDKMPALPAKGNLNLRDILESDFAFA 883 (883)
T ss_dssp CTTCCCCCCCCCCCSCCGGGGGTCSSCCC
T ss_pred hhhhhcCCCCCCCCCCCHHHHhcCCCCCC
Confidence 5 5899999999999999999999997
No 2
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.3e-196 Score=1770.71 Aligned_cols=789 Identities=36% Similarity=0.630 Sum_probs=639.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 002019 132 GMGTAKYYMLKRRQIKIETEAW------------EQAAKEYQDLLADMCEQKLAPNLPYVKSLFLGWFEPLRDAIAKDQA 199 (980)
Q Consensus 132 ~~~~~~~~~l~~RQ~~lE~~~~------------~~a~~~~r~~~~~~~~~g~a~~~~~~~~l~~~w~~~l~~~I~~e~~ 199 (980)
.++....+.+.+.|+.+|..+. +..+..+|+.+ .++..+|...|..+|+++..
T Consensus 294 ~~~~~~L~~~~~~Ql~~E~~~~v~v~sve~~~~~t~~~~~~r~~l---------------~~~~~~w~~~l~~~~~~~~~ 358 (1134)
T 3spa_A 294 HLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTL---------------KTLRDQWEKALCRALRETKN 358 (1134)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCEEEEECCSCCCCCCTTHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCeeEEeecccCCCCCHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999997632 11233455544 66788999999999998766
Q ss_pred Hhh--hccCccccccccccCCchhHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCC
Q 002019 200 TAQ--DKWKHMTYAPYFNNLPADMMAVITMHKLVGLLMTNAGEVRVVQAACQIGEAIENEARIQSFFKSTKKKNATDNNL 277 (980)
Q Consensus 200 ~~~--~~~~r~~y~p~L~~l~~e~lA~Iti~~~l~~~~~~~~~~~~~~~~~~IG~ave~E~~~~~~~~~~~k~~~~~~~~ 277 (980)
... ....+..++|||+.|+.+.++-|.|.++..+. . +|.+++.++..||..|++++.+++-.....
T Consensus 359 ~~~~~~~~~~~~~~p~l~~l~~~~~~~~~~~~~~~l~-~--~g~~~~~~~~~lg~~~~~~~~~~~~~~~~~--------- 426 (1134)
T 3spa_A 359 RLEREVYEGRFSLYPFLCLLDEREVVRMLLQVLQALP-A--QGESFTTLARELSARTFSRHVVQRQRVSGQ--------- 426 (1134)
T ss_dssp HHHHHHHTTCCCSTGGGGSSCHHHHHHHHHHHHHHCC-T--TCEEHHHHHHHHHHHHHHHHHHHHHHHHTH---------
T ss_pred HHHHhhccCCCccccceeeCCHHHHHHHHHHHHHHhc-c--cCccHHHHHHHHHHHHHHHHHHHHHHhhhH---------
Confidence 443 35668899999999999999997666655543 3 246778899999999999998864322110
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHHHH---HH--------HHHHHHHhhhhC-CCCCCCCCHHHHHHHHHHHHHHHHH
Q 002019 278 EGDSEPLTNDPEKLIKEQEKLKKRVTSLI---KK--------QKLQQVRGIVKG-HVDSKPWGQDALVKVGCRLIQLLME 345 (980)
Q Consensus 278 ~~~~~~l~~~~~~~~~~~~~~r~~~~~~~---~~--------~~~~~~~~~~~~-~~~~~~W~~~~~~~vG~~Li~~l~~ 345 (980)
.+.+.+...... .. .-.+.|+.+... ...+.+|+..++++||++|+++|++
T Consensus 427 -----------------~~~~~~~y~~y~~~~~~~~~~~~~~~~r~~w~~l~~~~~~~~~~W~~~~~~kvG~~Ll~~L~~ 489 (1134)
T 3spa_A 427 -----------------VQALQNHYRKYLCLLASDAEVPEPCLPRQYWEALGAPEALREQPWPLPVQMELGKLLAEMLVQ 489 (1134)
T ss_dssp -----------------HHHHHHHHHHHGGGTCSSCCCSSCCCHHHHHHHHHCCCCGGGCCCCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHHHhcCCccCCCCChHHHHHHhCCcccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 000001110000 00 000122222222 2357899999999999999999999
Q ss_pred HccccCCCCCCCCCCCcccCceEEEeeecccccCCCeEEEEEEeCHHHHHHHHhcccc---ccCCCCceeeCCcCcccCC
Q 002019 346 TAYIQPPVDQLGDSPPDIRPAFVHTLKSFTKEALKGRRYGVIECDPLVRKGLEKTGRH---MIIPYMPMLVPPLNWRGYN 422 (980)
Q Consensus 346 ~~~i~~~~~~~~~~~~~~~paF~h~~~~~~~~~~~~~~~gvi~~~~~~~~~l~~~~~~---~~~~~lPMlvpP~pW~~~~ 422 (980)
+++|.+...+ +++....+|||+|.|++. +++++|+|++||.+.+.+++.... +.+.+|||||||+||++++
T Consensus 490 ~~~i~~~~~~-~~~~~~~~paf~h~y~~~-----~~~~~G~i~~hp~~~~~l~~~~~~~~~~~~~~lPMlvpP~pW~~~~ 563 (1134)
T 3spa_A 490 ATQMPCSLDK-PHRSSRLVPVLYHVYSFR-----NVQQIGILKPHPAYVQLLEKAAEPTLTFEAVDVPMLCPPLPWTSPH 563 (1134)
T ss_dssp HCBCCC------------CBSEEEEEC---------CCCEEEEECHHHHHHHHHHTCSEEEEEGGGSCBSSCCEEEEETT
T ss_pred hccCCccccC-CCCCcccccceEEEEEEE-----cCcEEEEEEECHHHHHHHHhccccccccCcCCCCcccCCCCCCCCC
Confidence 9999875543 334467899999999753 478899999999999999875432 2345999999999999999
Q ss_pred CccccccCcceeeccchh-hHHHHHHcCCCCChhhHHHHHHhhcCcccEechhHHHHHHHHHhc-CCCCCCCCCCC-CCC
Q 002019 423 RGGHFFLPSYVMRTHGAR-QQRETIKMTPRSQLEPVFQALDTLGSTKWRVNKRILGVIDRMWAS-GGCLAGLVDQE-DVP 499 (980)
Q Consensus 423 ~GGYl~~~~~l~R~~~~~-~q~~~l~~~~~~~l~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~~-g~~~~~l~~~~-~~p 499 (980)
+||||..++.+||+++.. ++..++++..+++|+.||++||+||+|||+||++||+|+.++|++ |+++.+||+.. +.|
T Consensus 564 ~GGYl~~~t~~mR~~~~~~q~~~~l~~~~~~~l~~v~~aLN~Lg~t~W~IN~~VLdVv~~vw~~~G~~~~~iP~~~~~~p 643 (1134)
T 3spa_A 564 SGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAP 643 (1134)
T ss_dssp EEESSSSCCCSBCCCTTHHHHHHHHHSSCGGGGHHHHHHHHHHHTCEEEECHHHHHHHHHHHTTTCBGGGTBCCCC----
T ss_pred CceeEecCcceeecCCChHHHHHHHHhccccccHHHHHHHHHHhCCCcEecHHHHHHHHHHHHhcCCCcCCCCCCccccC
Confidence 999999999999996554 445556666778999999999999999999999999999999986 55678888753 345
Q ss_pred CCC---CCCCCCHHHHHHHHHHHHHHHHHHhHhhhhhhhHHHHHHHHHhccCCCceeecccCCCCCcccCCCCCCCCCCc
Q 002019 500 LPE---KPNTDDETEIKKWKWKVKTAKKQNSEKHSQRCDIELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGS 576 (980)
Q Consensus 500 ~P~---~p~~~d~~~~~~wk~~~~~~~~~~~~~~s~r~~~~~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGs 576 (980)
.|+ .|.+.++++.++|++++++.++.++++||+||+++++|++|++|+|+ .||||||+|||||+||+||||||||+
T Consensus 644 ~~p~~~~~~~~~~~~~~~~kr~~~~~~~~~~~~~S~Rc~~~~kL~iA~~f~~~-~fYfPhnlDFRGR~Yp~~p~LnhqGs 722 (1134)
T 3spa_A 644 QPPEAHLPHSAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDR-VFWLPHNMDFRGRTYPCPPHFNHLGS 722 (1134)
T ss_dssp ------------------------------CTHHHHHHHHHHHHHHHHHHTTS-CEECCEEECTTCCEEESCSSSCSCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC-eeecccccCCCCcCcCCCCCcCcccc
Confidence 443 23445677888999999999999999999999999999999999996 89999999999999999999999999
Q ss_pred cchhhhhhcccCCcCcccchHHHHHHHHHhhcCCCCC-CCHHHHHHHHHhhHHHHHHhhcCCcCCchhhhcCCChHHHHH
Q 002019 577 DLCRGVLEFEEGHPLGKAGLHWLKIHLANLYAGGVDK-LSYEGRVAFTENHLDDIFDSADRPLEGRRWWLGAEDPFQCLA 655 (980)
Q Consensus 577 Dl~RsLL~FaegkpLg~~Gl~WLkIhlAN~~g~G~DK-~s~deRi~wv~~n~~~I~~sA~dPl~~~~wW~~Ad~P~QfLA 655 (980)
|+|||||+||+|+|||++|++|||||+||+| |+|| .||+||++|+++|+++|++||+|||+|.+||++||+||||||
T Consensus 723 Dl~RsLL~FaegkpLG~~Gl~WLkIhlAN~~--G~dKk~s~~eRi~wv~~n~~~I~dsA~~Pl~g~~wW~~Ad~PwQfLA 800 (1134)
T 3spa_A 723 DVARALLEFAQGRPLGPHGLDWLKIHLVNLT--GLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLA 800 (1134)
T ss_dssp HHHHHTEEESSCEECTTTHHHHHHHHHHHHH--SCCTTSCHHHHHHHHHHHHHHHHHHHHCTTTSCCGGGGSSSHHHHHH
T ss_pred hHHHHHHHhccCCcCCcchHHHHHHHHHHhc--CCCcCCCHHHHHHHHHHHHHHHHHHHhCcccchhHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999 8998 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCccccccccccCCcchhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCC
Q 002019 656 TCINLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPA 735 (980)
Q Consensus 656 ~C~El~~a~~~~~p~~y~S~lPV~qDgSCnGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~ 735 (980)
+||||++|++++||++|+|||||||||||||||||||||||.+||++|||+|+|+|||||+.||+.|.+.+++|++++.
T Consensus 801 ~C~El~~a~~~~dp~~y~S~lPVhqDGSCNGLQHyAALgrD~~Ga~~VNL~psd~PqDvYs~Va~~V~~~~~~Da~~~~- 879 (1134)
T 3spa_A 801 CCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFRRQDAQRGM- 879 (1134)
T ss_dssp HHHHHHHHHTSSSGGGCEECCEEEECCSSHHHHHHHHHTTCHHHHHHTTCSCCSSCCCHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhcCCCccccccCccccCCCCcHHHHHHHHccChhhHHHhCCCCCCCcccHHHHHHHHHHHHHHhhhhcCh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999997763
Q ss_pred CCcchHHHHHhhccCccccccccceeeecccchhchHHHHHHHHhhccCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q 002019 736 TYPYASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARS 815 (980)
Q Consensus 736 ~~~~~~~a~~l~~~i~RKvvKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~ 815 (980)
.+|++|.+.||||+|||||||+|||||++|+++||.++|++.+.++++ .++.+|+|+|++||+||+++|++|+.
T Consensus 880 -----~~a~~l~~~I~RKvVKqtVMT~vYGvT~~Gar~QI~~~L~e~~~~~~~-~~~~~a~Yla~~i~~si~e~f~~a~~ 953 (1134)
T 3spa_A 880 -----RVAQVLEGFITRKVVKQTVMTVVYGVTRYGGRLQIEKRLRELSDFPQE-FVWEASHYLVRQVFKSLQEMFSGTRA 953 (1134)
T ss_dssp -----HHHHHTTTCCCHHHHHHHHHHHHHCCSSSHHHHHHHHHHHTCTTSCTT-THHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred -----HHHHHhhCCCChhhcccceEEeeecceehhHHHHHHHHHHhcccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999997666654 67889999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCCeEEEeeccCcce-eEEeeeEEEEEecCCC---cCchHhhhccCCCcchhhhhh
Q 002019 816 IMSWLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRH-LIRTSLQTLALQRETD---KVMVKRQRTAFPPNFVHSLDG 891 (980)
Q Consensus 816 im~WL~~~A~~i~~~~~pV~WtTP~GlpVvQ~Y~k~~~~-~I~t~lq~~~l~~~~d---~vd~rKq~~af~PNFIHSLDA 891 (980)
||+||++||++|++.+.||.|+||+||||+|||++..+. .|.|.+|.+++..+++ ++|++||++||||||||||||
T Consensus 954 im~WL~~~A~~i~~~~~pV~WtTPlGlpVvQpY~k~~k~~~i~~~~q~v~~~~~~d~~~~~d~~KQ~~afpPNFIHSLDA 1033 (1134)
T 3spa_A 954 IQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDS 1033 (1134)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEECTTSCEEECCCBCC-----------------------CBCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCEEEEeccCCCceeEecCCceEEEEeccCCcccCCCHHHHhccCCchHHhhHHH
Confidence 999999999999999999999999999999999997655 7889999999887644 699999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEeeccccCCCCChhHHHHHHHHHHHHhcCcchHHHHHHHHHHhCCCCC------------CC
Q 002019 892 SHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQKQFPKLN------------FP 959 (980)
Q Consensus 892 sHmmlta~~~~~~gi~fa~VHDSfwTha~dvd~m~~ilRe~FV~Lys~~il~~l~e~f~~~~~~~~------------~p 959 (980)
|||||||++|.+.||+|++|||||||||||||.|+++|||+||+||++|||++|.++|.++|+++. ||
T Consensus 1034 sHmmlTa~~c~~~gi~FasVHDSfwTHA~dvd~M~~ilRe~FV~L~s~~il~~L~~~~~~~~~~~~~~~~~~~~~~~~~p 1113 (1134)
T 3spa_A 1034 SHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEPQKILEASQLKETLQ 1113 (1134)
T ss_dssp HHHHHHHHHHHHTTCCCEEETTEEEEEGGGHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHSCCTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCEEEeecccccCcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHcccchhhhhhhhHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999999999999999764 99
Q ss_pred CCCCCCCCChhhhccCCCCCC
Q 002019 960 PLPERGDFDLRDVLESPYFFN 980 (980)
Q Consensus 960 ~~P~~G~lDl~~Vl~S~YfF~ 980 (980)
++|++|+|||++|++|+||||
T Consensus 1114 ~~P~~G~lDL~~Vl~S~YFFs 1134 (1134)
T 3spa_A 1114 AVPKPGAFDLEQVKRSTYFFS 1134 (1134)
T ss_dssp SCCCCCSCCGGGGGGCTTSCC
T ss_pred CCCCCCCccHHHHhcCCCCCC
Confidence 999999999999999999997
No 3
>3q23_A Virion RNA polymerase; protein-DNA complex; HET: DNA G2P; 1.80A {Enterobacteria phage N4} PDB: 3q0a_A* 3q22_A* 4ff1_A 4ff2_A* 4ff3_A* 4ff4_A* 3q24_A* 3c3l_A 3c46_A 3c2p_A* 2po4_A
Probab=97.63 E-value=0.0002 Score=85.75 Aligned_cols=303 Identities=16% Similarity=0.149 Sum_probs=174.3
Q ss_pred hhHHHHHHhhcCcccEechhHHHHHHHHHhcC-CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhHhhhhh
Q 002019 455 EPVFQALDTLGSTKWRVNKRILGVIDRMWASG-GCLAGLVDQEDVPLPEKPNTDDETEIKKWKWKVKTAKKQNSEKHSQR 533 (980)
Q Consensus 455 ~~v~~aLN~Lq~t~w~IN~~vL~vi~~~w~~g-~~~~~l~~~~~~p~P~~p~~~d~~~~~~wk~~~~~~~~~~~~~~s~r 533 (980)
+.+-.+|...|.+|++||..+..+...+=+.+ ..+.|.- ++..|. -..+..+. +.-+| .+.+
T Consensus 338 ~lqakalkkaQ~q~hrvn~~m~~~~e~LgEDalltmlGa~---~l~~e~----ln~~~RkS-------lEGKN---~sV~ 400 (1118)
T 3q23_A 338 PEQKAALKAEQATEFYVHTPMVQFYETLGKDRILELMGAG---TLNKEL----LNDNHAKS-------LEGKN---RSVE 400 (1118)
T ss_dssp HHHHHHHHHHHHCCBEECHHHHHHHHHHHHHHHHHHHSCC---SCCTTS----SCHHHHHH-------HHHHH---HHHH
T ss_pred HHHHHHHHHhhccCceecccHHHHHHHhchhHHHHHhCcc---cccccc----cchhHHhh-------hhccc---HHHH
Confidence 45667889999999999999999977664433 1222221 111111 11111111 11111 1122
Q ss_pred hhHH-------HHHHHHHhccCCCceeecccCCCCCcccCCCCCCCCCCccchhhhhhcccC-CcCc---ccchHHHHHH
Q 002019 534 CDIE-------LKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFEEG-HPLG---KAGLHWLKIH 602 (980)
Q Consensus 534 ~~~~-------~~L~iA~~f~~~~~fYfP~nlDFRGR~Yp~~~~Ln~qGsDl~RsLL~Faeg-kpLg---~~Gl~WLkIh 602 (980)
.+++ ..-+++... +.-.+|||++|+==||.=-. .-+|||.+=|-|-++.=.+. -.|+ ...++-|+.+
T Consensus 401 rdi~~~~d~iN~i~e~~~~~-~~vpIyf~y~mtrVGR~qm~-g~~NPQSsKLhRemv~pt~StV~L~~~N~~dm~~FqLg 478 (1118)
T 3q23_A 401 DSYNQLFSVIEQVRAQSEDI-STVPIHYAYNMTRVGRMQML-GKYNPQSAKLVREAILPTKATLDLSNQNNEDFSAFQLG 478 (1118)
T ss_dssp HHHHHHHHHHHHHHHHCSCG-GGCCEECCEEECTTSCEEES-SSSSTTTCHHHHTTEESCCEEECCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccc-ccCceeeeechhhhhhhhhc-CCCCchhHHHHHHHhcCCceEeecCCCCHHHHHHHHHH
Confidence 2211 111222211 11279999999555554322 67899999999999876553 2455 3468888889
Q ss_pred HHHhhcCCCCCCCHHHHHHHHHhhH-----------HHHHHhhcCCcCCc---hhhhcCCChHHHHHHHHHHHHhhcCCC
Q 002019 603 LANLYAGGVDKLSYEGRVAFTENHL-----------DDIFDSADRPLEGR---RWWLGAEDPFQCLATCINLSEALRSPS 668 (980)
Q Consensus 603 lAN~~g~G~DK~s~deRi~wv~~n~-----------~~I~~sA~dPl~~~---~wW~~Ad~P~QfLA~C~El~~a~~~~~ 668 (980)
+|-.+|=.+||.+-++-++=+.+-+ .+|+....=|-... -=-+++++||-.+-+-+|+++++....
T Consensus 479 vaQslGiKVeK~~~e~~~~~~~~~l~t~lkpaVdmm~eiLt~G~~d~~~~dtl~~alg~~k~fvaamA~~e~Ary~la~G 558 (1118)
T 3q23_A 479 LAQALDIKVHTMTREVMSDELTKLLEGNLKPAIDMMVEFNTTGSLPENAVDVLNTALGDRKSFVALMALMEYSRYLVAED 558 (1118)
T ss_dssp HHHHTTCCGGGSCHHHHHHHHHHHHHTTTHHHHHHHHHHHHHSCCCTTHHHHHHHHHGGGCSHHHHHHHHHHHHHHHCSC
T ss_pred HHHHcCcchhcccHHHHHHHHHHHhcccccHHHHHHHHHhccCCCChhHHHHHHHHhcCCchHHHHHHHHHHHHHHHhcC
Confidence 9999965667777665554443322 23333322120000 011578899554448899998876554
Q ss_pred CCCccccccccccCCcchhhHHHHh-hCCccc-----------------cccccccCC-CCCchhhhHHHHHHHHHHHHh
Q 002019 669 PESTISHIPVHMDGSCNGLQHYAAL-GRDKLG-----------------AAAVNLVGG-DKPADVYSGIAARVLEIMRAD 729 (980)
Q Consensus 669 p~~y~S~lPV~qDgSCnGLQHyAAL-~rD~~G-----------------a~~VNL~p~-d~P~DvYs~Va~~v~~~i~~d 729 (980)
-..|.+.|-+-.||--||=-..=-+ |.-... ++.+|=.-+ ..--|.|..+++.+...+...
T Consensus 559 ~asF~T~L~~ElDGVTNGP~Namv~~G~g~~t~~~~~nl~KgG~F~G~~g~t~N~~~~~~~n~DLYE~ts~~l~~aLg~~ 638 (1118)
T 3q23_A 559 KSAFVTPLYVEADGVTNGPINAMMLMTGGLFTPDWIRNIAKGGLFIGSPNKTMNEHRSTADNNDLYQASTNALMESLGKL 638 (1118)
T ss_dssp GGGEEECCEEEEEETTHHHHHHHHHHCCSCCCHHHHHHHHTTTEEESCTTCCHHHHHHHTCCCCHHHHHHHHHHHHHHHH
T ss_pred CccceeeeEEEecCccccHHHHHHHhcCCcCCHHHHHHhhccceeecCCCchhhhhhcccCCchHHHHHHHHHHHHHHHh
Confidence 5689999999999999995433222 221111 122332211 123799999999999888754
Q ss_pred ccCCCCCCc------ch-HHHHHh----------hccCccccccccceeeecccchhchHHHHH
Q 002019 730 ADKDPATYP------YA-SCARLL----------INQVDRKLVKQTVMTSVYGVTYIGARDQIK 776 (980)
Q Consensus 730 a~~~~~~~~------~~-~~a~~l----------~~~i~RKvvKqtVMT~vYGvT~~Gar~qI~ 776 (980)
..+=....| .. .++..+ .-.++|++.|.|+=..+||+...|+..-|.
T Consensus 639 ~~~~~~n~Pwq~q~~~l~sl~s~f~gd~~~~Eng~~~l~R~~aKnPlT~~~YGSg~rgia~gva 702 (1118)
T 3q23_A 639 RSNYASNMPIQSQIDSLLSLMDLFLPDINLGENGALELKRGIAKNPLTITIYGSGARGIAGKLV 702 (1118)
T ss_dssp HHTTTTCHHHHHHHHHHHHHHHHHCTTEEECTTCCEEECTHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred hhhcccCCchHHHHHHHHHHHHHhhcccccCCCcchhhhhhhhhCCceeeeecCchHHHHHHHH
Confidence 321111111 00 122222 126899999999999999998887765443
No 4
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...
Probab=66.13 E-value=4.1 Score=48.07 Aligned_cols=209 Identities=15% Similarity=0.174 Sum_probs=125.7
Q ss_pred HHHHhhcCCCCCCccccccccccCCcchhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCCCc
Q 002019 659 NLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYP 738 (980)
Q Consensus 659 El~~a~~~~~p~~y~S~lPV~qDgSCnGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~~~ 738 (980)
+++.++..+ .+ +.=|.-|-|-==|-.+|.|.+|+....+.+ ...|||+..|..+-..- .+
T Consensus 301 ~iR~~f~a~--~G---~~lv~aDySqiElRvlAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~-------~~--- 360 (540)
T 4dfk_A 301 RIRRAFIAE--EG---WLLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVP-------RE--- 360 (540)
T ss_dssp HHHTTEECC--TT---EEEEEEEETTHHHHHHHHHHCCHHHHHHHH-----TTCCHHHHHHHHHHTCC-------GG---
T ss_pred hhhheEeCC--CC---CEEEEecHHHHHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHcCCC-------hh---
Confidence 566666532 23 367889999999999999999998666554 35799999887764320 00
Q ss_pred chHHHHHhhccCccccccccceeeecccchhchHHHHHHHHhhccCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002019 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMS 818 (980)
Q Consensus 739 ~~~~a~~l~~~i~RKvvKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~ 818 (980)
.. ..-.|+..|...--.+||.+.+|...++ |+ +.+ -|+.+.+..-+.||+ +.+
T Consensus 361 --~v-----~~~~R~~aK~~~fg~~YG~~~~~La~~l-------gi-s~~---------eA~~~i~~~~~~~p~---v~~ 413 (540)
T 4dfk_A 361 --AV-----DPLMRRAAKTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPK---VRA 413 (540)
T ss_dssp --GC-----CHHHHHHHHHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHSTH---HHH
T ss_pred --hc-----CHHHHhHHHHHHHhhhhCCchhHHHHHc-------CC-CHH---------HHHHHHHHHHHhChh---HHH
Confidence 00 1236999999999999999999987764 32 221 234555666667777 556
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCCeEEEeeccCcceeEEeeeEEEEEecCCCcCchHhhhccCCCcchhhhhhHHHHHHH
Q 002019 819 WLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTA 898 (980)
Q Consensus 819 WL~~~A~~i~~~~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~~~l~~~~d~vd~rKq~~af~PNFIHSLDAsHmmlta 898 (980)
|+.++.....+.| .| +|..|-...-|--. +.....|.+.--.+-|++=+==|+=++..|
T Consensus 414 ~~~~~~~~a~~~G-yv--~Tl~GRrr~~p~~~------------------s~~~~~r~~aeR~a~N~~iQGsaAdi~K~a 472 (540)
T 4dfk_A 414 WIEKTLEEGRRRG-YV--ETLFGRRRYVPDLE------------------ARVKSVREAAERMAFNMPVQGTAADLMKLA 472 (540)
T ss_dssp HHHHHHHHHHHHS-EE--ECTTCCEEECGGGG------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-cE--ECCCCCeecCCccc------------------cccHHHHhhhhhhHhhhhhHhHHHHHHHHH
Confidence 6666655544443 12 46666432211100 011111222122345665555555444332
Q ss_pred H-----HHHHcCCc-EEEeeccccC--CCCChhHHHHHHHHHHHH
Q 002019 899 V-----ACKRAGLS-FAGVHDSYWT--HACDVDQMNRILREKFVE 935 (980)
Q Consensus 899 ~-----~~~~~gi~-fa~VHDSfwT--ha~dvd~m~~ilRe~FV~ 935 (980)
. ...+.|.. ...|||.... +...++.+..++++.+-.
T Consensus 473 mi~~~~~l~~~~~~l~lqVHDElv~ev~~~~~~~~~~~v~~~Me~ 517 (540)
T 4dfk_A 473 MVKLFPRLEEMGARMLLQVHDELVLEAPKERAEAVARLAKEVMEG 517 (540)
T ss_dssp HHHHHHHHHHHTCEEEEECSSEEEEEEEGGGHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCeEEEEEcceEEEEeCHHHHHHHHHHHHHHHhc
Confidence 1 23445664 4569999765 567788899999987744
No 5
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=65.55 E-value=5.1 Score=47.76 Aligned_cols=210 Identities=19% Similarity=0.180 Sum_probs=124.0
Q ss_pred HHHHhhcCCCCCCccccccccccCCcchhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCCCc
Q 002019 659 NLSEALRSPSPESTISHIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYP 738 (980)
Q Consensus 659 El~~a~~~~~p~~y~S~lPV~qDgSCnGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~~~ 738 (980)
+++.++.. |.+ +.-|.-|-|-==|=.+|.|.+|.....+.+ ...|||+..|..+-..- ++
T Consensus 365 ~iR~~f~~--~~g---~~lv~aDysqiElRilA~ls~d~~l~~af~-----~g~Dih~~tA~~~f~~~-------~e--- 424 (605)
T 2kfn_A 365 RIRQAFIA--PED---YVIVSADYSQIELRIMAHLSRDKGLLTAFA-----EGKDIHRATAAEVFGLP-------LE--- 424 (605)
T ss_dssp HHHHTBBC--CTT---EEEEEEEETTHHHHHHHHHTTCHHHHHHHH-----TTCCHHHHHHHHHTTCC-------GG---
T ss_pred hHhheeeC--CCC---CEEEEechhhhHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCCC-------hh---
Confidence 56777653 233 467889999999999999999998776665 35799999887763210 00
Q ss_pred chHHHHHhhccCccccccccceeeecccchhchHHHHHHHHhhccCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002019 739 YASCARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMS 818 (980)
Q Consensus 739 ~~~~a~~l~~~i~RKvvKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~ 818 (980)
.. ..-.|+..|...--.+||.+.+|...++ |+ +.+ -|+.+.+..-+.||+ +.+
T Consensus 425 --~v-----t~~~R~~aK~~~fg~~YG~~~~~la~~l-------~i-~~~---------ea~~~i~~~~~~~p~---v~~ 477 (605)
T 2kfn_A 425 --TV-----TSEQRRSAKAINFGLIYGMSAFGLARQL-------NI-PRK---------EAQKYMDLYFERYPG---VLE 477 (605)
T ss_dssp --GC-----CHHHHHHHHHHHHHHHTTCCTTHHHHHH-------TC-CTT---------THHHHHHHHHHHCHH---HHH
T ss_pred --hc-----CHHHHhhhhhhhccccccCCHHHHHHHc-------CC-CHH---------HHHHHHHHHHHHCcc---HHH
Confidence 00 0125999999999999999999988764 43 222 134455556667776 566
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCCeEEEeeccCcceeEEeeeEEEEEecCCCcCchHhhhccCCCcchhhhhhH---HHH
Q 002019 819 WLGECAKVIASENQAVRWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGS---HMM 895 (980)
Q Consensus 819 WL~~~A~~i~~~~~pV~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~~~l~~~~d~vd~rKq~~af~PNFIHSLDAs---Hmm 895 (980)
|+.++.+...+.| .| +|.+|-...-|--. +.....|.+.--.+-|++=+==|+ .+.
T Consensus 478 ~~~~~~~~a~~~g-~v--~tl~GRrr~~p~~~------------------s~~~~~r~~~~r~a~N~~iQgsaaDi~k~a 536 (605)
T 2kfn_A 478 YMERTRAQAKEQG-YV--ETLDGRRLYLPDIK------------------SSNGARRAAAERAAINAPMQGTAADIIKRA 536 (605)
T ss_dssp HHHHHHHHHHHHS-EE--ECTTCCEEECTTTT------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-cE--ECCCCCeEECCccc------------------CCCchhhhhhhhhHhhHHhHHHHHHHHHHH
Confidence 7776665544443 23 56666322111000 001111111111344555443333 333
Q ss_pred HHHH--HHHHcCCc---EEEeeccccC--CCCChhHHHHHHHHHHHHh
Q 002019 896 MTAV--ACKRAGLS---FAGVHDSYWT--HACDVDQMNRILREKFVEL 936 (980)
Q Consensus 896 lta~--~~~~~gi~---fa~VHDSfwT--ha~dvd~m~~ilRe~FV~L 936 (980)
|..+ .+.+.|+. ...|||.... +...++.+..++++.+-.-
T Consensus 537 m~~~~~~l~~~~~~~~~~l~vHDEl~~ev~~~~~~~~~~~v~~~M~~~ 584 (605)
T 2kfn_A 537 MIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENC 584 (605)
T ss_dssp HHHHHHHHHHHCCSEEEEEEETTEEEEEEETTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcCCCceeeEEeccEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 3322 23445763 3569998776 4567888888888876544
No 6
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=51.21 E-value=9 Score=45.68 Aligned_cols=198 Identities=16% Similarity=0.165 Sum_probs=118.7
Q ss_pred cccccccCCcchhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCCCcchHHHHHhhccCcccc
Q 002019 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKL 754 (980)
Q Consensus 675 ~lPV~qDgSCnGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~~~~~~~a~~l~~~i~RKv 754 (980)
+.=|.-|-|-==|-.+|.|.+|...-.+.+ ...|||+..|..+-.. .++.. ..-.|+.
T Consensus 363 ~~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~-------~~~~v----------t~~~R~~ 420 (592)
T 3pv8_A 363 WLIFAADYSQIELRVLAHIAEDDNLMEAFR-----RDLDIHTKTAMDIFQV-------SEDEV----------TPNMRRQ 420 (592)
T ss_dssp EEEEEEEETTHHHHHHHHHHTCHHHHHHHH-----TTCCHHHHHHHHHHSC-------CTTTC----------CHHHHHH
T ss_pred CEEEEechhhHHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCC-------ChhhC----------CHHHHHH
Confidence 357888999999999999999998766654 3579999988877421 01000 1124999
Q ss_pred ccccceeeecccchhchHHHHHHHHhhccCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 002019 755 VKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAV 834 (980)
Q Consensus 755 vKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV 834 (980)
.|...--.+||.+.+|...++ |+ +.+ -|+.+.+..-+.||+ +.+|+.++.....+.| .|
T Consensus 421 aK~~~fg~~YG~~~~~La~~l-------~i-~~~---------eA~~~i~~~~~~~p~---v~~~~~~~~~~a~~~G-yv 479 (592)
T 3pv8_A 421 AKAVNYGIVYGISDYGLAQNL-------NI-SRK---------EAAEFIERYFESFPG---VKRYMENIVQEAKQKG-YV 479 (592)
T ss_dssp HHHHHHHHHTTCCHHHHHHHH-------TC-CHH---------HHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHS-EE
T ss_pred HHHHHHHHHhcCChHHHHHHc-------CC-CHH---------HHHHHHHHHHHHChh---HHHHHHHHHHHHHHcC-CE
Confidence 999999999999999987654 32 221 234555666677777 5566666655544443 22
Q ss_pred EEEcCCCCeEEEeeccCcceeEEeeeEEEEEecC-CCcCchHhhhccCCCcchhhhhhHHHHHH---HH--HHHHcCCc-
Q 002019 835 RWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRE-TDKVMVKRQRTAFPPNFVHSLDGSHMMMT---AV--ACKRAGLS- 907 (980)
Q Consensus 835 ~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~~~l~~~-~d~vd~rKq~~af~PNFIHSLDAsHmmlt---a~--~~~~~gi~- 907 (980)
+|..|-...-| .- +.....|.+.--.+-|++=+==|+=++.. .+ ...+.|+.
T Consensus 480 --~Tl~GRrr~~p-------------------~i~s~n~~~r~~~eR~a~N~~iQGsaAdi~k~ami~i~~~l~~~~~~~ 538 (592)
T 3pv8_A 480 --TTLLHRRRYLP-------------------DITSRNFNVRSFAERMAMNTPIQGSAADIIKKAMIDLNARLKEERLQA 538 (592)
T ss_dssp --ECTTCCEEECG-------------------GGGCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred --ECCCCCeeeCC-------------------CccccchhhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35555321111 10 00111121111134577544444433322 22 23456762
Q ss_pred --EEEeecccc--CCCCChhHHHHHHHHHHHHh
Q 002019 908 --FAGVHDSYW--THACDVDQMNRILREKFVEL 936 (980)
Q Consensus 908 --fa~VHDSfw--Tha~dvd~m~~ilRe~FV~L 936 (980)
...|||... ++...++.+..++++.+-.-
T Consensus 539 ~l~lqVHDElv~ev~~~~~~~~~~~v~~~Me~a 571 (592)
T 3pv8_A 539 HLLLQVHDELILEAPKEEMERLCRLVPEVMEQA 571 (592)
T ss_dssp EEEEECSSEEEEEEEGGGHHHHHHHHHHHHHTS
T ss_pred eEEEEEcceeEEEeCHHHHHHHHHHHHHHHhhc
Confidence 556999875 56678888888888877543
No 7
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A*
Probab=38.29 E-value=21 Score=44.24 Aligned_cols=198 Identities=16% Similarity=0.190 Sum_probs=112.3
Q ss_pred cccccccCCcchhhHHHHhhCCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCCCcchHHHHHhhccCcccc
Q 002019 675 HIPVHMDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQVDRKL 754 (980)
Q Consensus 675 ~lPV~qDgSCnGLQHyAAL~rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~~~~~~~a~~l~~~i~RKv 754 (980)
+.-|.-|-|-==|-.+|.|.+|.....+.+ ...|||+..|..+-..- ++. ...-.|+.
T Consensus 604 ~~lv~aDySqiElRilAhls~D~~l~~af~-----~g~Dih~~tA~~~fg~~-------~e~----------vt~~~R~~ 661 (832)
T 1bgx_T 604 WLLVALDYSQIELRVLAHLSGDENLIRVFQ-----EGRDIHTETASWMFGVP-------REA----------VDPLMRRA 661 (832)
T ss_dssp CCEEEEEESSHHHHHHHHTTTCTTHHHHHH-----HTCCHHHHHHHHHHTCC-------TTS----------CCTTHHHH
T ss_pred CEEEEechhhhHHHHHHHHcCCHHHHHHHh-----cCCCHHHHHHHHHhCCC-------hhh----------cCHHHHHH
Confidence 356777888888888999999987666554 34699998877663210 000 01235899
Q ss_pred ccccceeeecccchhchHHHHHHHHhhccCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeE
Q 002019 755 VKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSIMSWLGECAKVIASENQAV 834 (980)
Q Consensus 755 vKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~im~WL~~~A~~i~~~~~pV 834 (980)
.|...--.+||.+.+|...++ |+ +.+ -|+.+.+...+.||+ +.+|+.++.....+.|- |
T Consensus 662 aK~~nfgi~YG~~~~gLa~~l-------gi-s~~---------eA~~~i~~~~~~~p~---v~~~~~~~~~~a~~~Gy-v 720 (832)
T 1bgx_T 662 AKTINFGVLYGMSAHRLSQEL-------AI-PYE---------EAQAFIERYFQSFPK---VRAWIEKTLEEGRRRGY-V 720 (832)
T ss_dssp HHHHHHHTTSCCCHHHHHHHS-------SC-CHH---------HHHHHHHHHHHHCHH---HHHHHHHHTHHHHTTSS-C
T ss_pred HHHHHHhhhcCCchhHHHHHc-------CC-CHH---------HHHHHHHHHHHHCcc---HHHHHHHHHHHHHHCCe-E
Confidence 999999999999999887653 42 221 244555666677777 56777777666555432 2
Q ss_pred EEEcCCCCeEEEeeccCcceeEEeeeEEEEEecCCCcCchHhhhccCCCcchhhhhhHHH---HHHHHH--HHHcCCc-E
Q 002019 835 RWTTPLGLPVVQPYHQLGRHLIRTSLQTLALQRETDKVMVKRQRTAFPPNFVHSLDGSHM---MMTAVA--CKRAGLS-F 908 (980)
Q Consensus 835 ~WtTP~GlpVvQ~Y~k~~~~~I~t~lq~~~l~~~~d~vd~rKq~~af~PNFIHSLDAsHm---mlta~~--~~~~gi~-f 908 (980)
+|..|-...-| .. .+.....|...--.+-|++=+==|+=+ .|..+. ..+.+.. +
T Consensus 721 --~Tl~GRrr~~p--~i----------------~s~~~~~r~~~eR~a~N~~iQGsAADiik~Ami~~~~~l~~~~~~lv 780 (832)
T 1bgx_T 721 --ETLFGRRRYVP--DL----------------EARVKSVREAAERMAFNMPVQGTAADLMKLAMVKLFPRLEEMGARML 780 (832)
T ss_dssp --CCSSCCCCCCG--GG----------------SCSSHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHHTCEEE
T ss_pred --EecCCCEEECC--cc----------------cCCCcchhhhhhhhhccHhhHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence 44444211000 00 001111122212245675544333333 333221 1223553 4
Q ss_pred EEeeccccCC--CCChhHHHHHHHHHHHH
Q 002019 909 AGVHDSYWTH--ACDVDQMNRILREKFVE 935 (980)
Q Consensus 909 a~VHDSfwTh--a~dvd~m~~ilRe~FV~ 935 (980)
..|||....+ ...++.+..++++.+-.
T Consensus 781 lqVHDElv~evp~~~~~~~~~~v~~~M~~ 809 (832)
T 1bgx_T 781 LQVHDELVLEAPKERAEAVARLAKEVMEG 809 (832)
T ss_dssp EEETTEEEEEC----CHHHHHHHHHHHHS
T ss_pred EEeccEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 5699987764 56788888888887654
No 8
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=22.29 E-value=58 Score=39.45 Aligned_cols=93 Identities=16% Similarity=0.094 Sum_probs=65.3
Q ss_pred cccccccCCcchhhHHHHhh---CCccccccccccCCCCCchhhhHHHHHHHHHHHHhccCCCCCCcchHHHHHhhccC-
Q 002019 675 HIPVHMDGSCNGLQHYAALG---RDKLGAAAVNLVGGDKPADVYSGIAARVLEIMRADADKDPATYPYASCARLLINQV- 750 (980)
Q Consensus 675 ~lPV~qDgSCnGLQHyAAL~---rD~~Ga~~VNL~p~d~P~DvYs~Va~~v~~~i~~da~~~~~~~~~~~~a~~l~~~i- 750 (980)
+.-|.-|-|-==|=.+|.|. +|.....+.+ .+ |||+..|. +- ++
T Consensus 463 ~~lv~aDySqiElRilAhls~~~~D~~l~~af~--~g----DiH~~tA~-~~-------------------------gv~ 510 (698)
T 1x9m_A 463 WVQAGIDASGLELRCLAHFMARFDNGEYAHEIL--NG----DIHTKNQI-AA-------------------------ELP 510 (698)
T ss_dssp CEEEEEEETTHHHHHHHHHHHHHHTTHHHHHHH--HS----CHHHHHHH-HS-------------------------CCS
T ss_pred CEEEEEehhhhHHHHHHHHhhhcCcHHHHHHHh--CC----CHhHHHHH-Hh-------------------------CCc
Confidence 35788898888888888888 9998777665 12 99998765 31 12
Q ss_pred ccccccccceeeecccchhchHHHHHHHHhhccCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002019 751 DRKLVKQTVMTSVYGVTYIGARDQIKKRLKERCAIEDDSKLFGAACYAAKTTLTALGEMFEAARSI 816 (980)
Q Consensus 751 ~RKvvKqtVMT~vYGvT~~Gar~qI~~~L~~~g~~~d~~~~~~~a~yla~~i~~ai~e~f~~A~~i 816 (980)
.|+..|...--.+||.+..|...++ |+ +. --|+.+.+..-+.||+.+..
T Consensus 511 ~R~~aK~~nfg~~YG~g~~~La~~l-------gi-s~---------~eA~~~i~~~~~~~p~v~~~ 559 (698)
T 1x9m_A 511 TRDNAKTFIYGFLYGAGDEKIGQIV-------GA-GK---------ERGKELKKKFLENTPAIAAL 559 (698)
T ss_dssp SHHHHHHHHHHHHTTCCHHHHHTTT-------TC-CH---------HHHHHHHHHHHHTCHHHHHH
T ss_pred hHhhhHHHHHccccCCCHHHHHHHc-------CC-CH---------HHHHHHHHHHHHHCcCHHHH
Confidence 2999999999999999998877543 32 11 12445556666677775443
No 9
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=17.15 E-value=2.1e+02 Score=28.02 Aligned_cols=60 Identities=18% Similarity=0.146 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHcCCcEEEeeccccCCCCChhHHHHHHHHHHHHhcCcchHHHHHHHHHH
Q 002019 891 GSHMMMTAVACKRAGLSFAGVHDSYWTHACDVDQMNRILREKFVELYEQPILEDLLASFQK 951 (980)
Q Consensus 891 AsHmmlta~~~~~~gi~fa~VHDSfwTha~dvd~m~~ilRe~FV~Lys~~il~~l~e~f~~ 951 (980)
..+++.....|.+.|+.|.++.|.+-| ...++.|...+...|-+++++.+-++..+-...
T Consensus 73 ~~~~~~~~~~l~~~gv~l~~~~~~~d~-~~~~~~~~~~i~~~~ae~E~~~i~~R~~~g~~~ 132 (183)
T 1gdt_A 73 TADMIQLIKEFDAQGVSIRFIDDGIST-DGEMGKMVVTILSAVAQAERQRILERTNEGRQE 132 (183)
T ss_dssp HHHHHHHHHHHHHTTCEEEEGGGCCBC-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEecCCccC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666788999999999999854 344566666777788888888887777665554
No 10
>1d2v_A Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-bromide; HET: NAG BMA MAN FUC HEM; 1.75A {Homo sapiens} SCOP: a.93.1.2 PDB: 1cxp_A* 1d5l_A* 1d7w_A* 1dnu_A* 1dnw_A* 4dl1_A* 3zs1_A* 3f9p_A* 1mhl_A* 1myp_A* 3zs0_A*
Probab=11.40 E-value=47 Score=30.52 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=9.7
Q ss_pred cccCCcchhhH
Q 002019 679 HMDGSCNGLQH 689 (980)
Q Consensus 679 ~qDgSCnGLQH 689 (980)
..|||||-|+|
T Consensus 9 t~DG~cNNl~~ 19 (104)
T 1d2v_A 9 TITGMCNNRRS 19 (104)
T ss_dssp CSSCTTSSSSS
T ss_pred CCCCCccCCCC
Confidence 46999999997
Done!