BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002020
(980 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WEO|A Chain A, Solution Structure Of Ring-Finger In The Catalytic
Subunit (Irx3) Of Cellulose Synthase
Length = 93
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 9 CNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58
C CGDQ+G T G++FVAC+EC FP C+ C++ E +EG + C +C + Y
Sbjct: 19 CEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRY 68
>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
Translocation Intermediate
Length = 802
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 669 GWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIF 728
G+ ++TED T ++H RGW+SLY R G P + + Q RWA G +++
Sbjct: 334 GFAGETITEDAETALEIHSRGWKSLYID--RAMIAGLQPETFASFIQQRGRWATGMMQML 391
Query: 729 LSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTG 779
L ++ G G + QRL Y+N++ + F L + + P I L G
Sbjct: 392 LLKNPLFRRGLG-----IAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFG 437
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM 479
+VY +RE+ +H K AL R+ L ++ D DH + R F+
Sbjct: 214 VVYSTRERN---EHAKAGNMSAALERLKGEL-----VVVFDADHVPSRDFLARTVGYFVE 265
Query: 480 DPQVGRDVCYVQFPQRF---DGIDKS----DRYANRNIVFFDVNMKGLDGIQGPMYVGTG 532
DP D+ VQ P F D I ++ DR N +F+ +GLD G + G+
Sbjct: 266 DP----DLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSA 321
Query: 533 CMFNRQAL 540
+ R+AL
Sbjct: 322 AVLRRRAL 329
>pdb|2L43|A Chain A, Structural Basis For Histone Code Recognition By
Brpf2-Phd1 Finger
Length = 88
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFD-DEIKEGRKACLRC 54
VC+ C D G + N V + C CN + + C+ I EG+ C C
Sbjct: 27 VCSICMD--GESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHC 72
>pdb|3F5N|A Chain A, Structure Of Native Human Neuroserpin
pdb|3F5N|B Chain B, Structure Of Native Human Neuroserpin
pdb|3F5N|C Chain C, Structure Of Native Human Neuroserpin
pdb|3F5N|D Chain D, Structure Of Native Human Neuroserpin
pdb|3F5N|E Chain E, Structure Of Native Human Neuroserpin
Length = 407
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 271 ANTVLSILALDYPVDKVSCYV--SDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAP 328
A + +L + Y D++S + S + T E LV+ A +W KK +E P
Sbjct: 232 AGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVK-AQLVEEWANSVKKQKVEVYLP 290
Query: 329 EFYFSQKIDYLKDKIQ 344
F Q+ID LKD ++
Sbjct: 291 RFTVEQEID-LKDVLK 305
>pdb|3FGQ|A Chain A, Crystal Structure Of Native Human Neuroserpin
pdb|3FGQ|B Chain B, Crystal Structure Of Native Human Neuroserpin
Length = 397
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 271 ANTVLSILALDYPVDKVSCYV--SDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAP 328
A + +L + Y D++S + S + T E LV+ A +W KK +E P
Sbjct: 232 AGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVK-AQLVEEWANSVKKQKVEVYLP 290
Query: 329 EFYFSQKIDYLKDKIQ 344
F Q+ID LKD ++
Sbjct: 291 RFTVEQEID-LKDVLK 305
>pdb|2KU3|A Chain A, Solution Structure Of Brd1 Phd1 Finger
Length = 71
Score = 31.2 bits (69), Expect = 3.2, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFD-DEIKEGRKACLRC 54
VC+ C D G + N V + C CN + + C+ I EG+ C C
Sbjct: 18 VCSICMD--GESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHC 63
>pdb|2EQ5|A Chain A, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
pdb|2EQ5|B Chain B, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
pdb|2EQ5|C Chain C, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
pdb|2EQ5|D Chain D, Crystal Structure Of Hydantoin Racemase From Pyrococcus
Horikoshii Ot3
Length = 228
Score = 30.8 bits (68), Expect = 3.5, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 229 DRETYIDRLSARFEREGEPSEL--AAVDFFVSTVDPLKEPPLITANTVLSILALDY 282
+ E I RL+ FEREG + + A D V V L P+I A + +S LAL Y
Sbjct: 59 EAEPKIIRLAKEFEREGVDAIIISCAADPAVEKVRKLLSIPVIGAGSSVSALALAY 114
>pdb|3F02|A Chain A, Cleaved Human Neuroserpin
pdb|3F02|B Chain B, Cleaved Human Neuroserpin
Length = 359
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 271 ANTVLSILALDYPVDKVSCYV--SDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAP 328
A + +L + Y D++S + S + T E LV+ A +W KK +E P
Sbjct: 232 AGGIYQVLEIPYEGDEISMMLVLSRQEVPLATLEPLVK-AQLVEEWANSVKKQKVEVYLP 290
Query: 329 EFYFSQKIDYLKDKIQ 344
F Q+ID LKD ++
Sbjct: 291 RFTVEQEID-LKDVLK 305
>pdb|1Y02|A Chain A, Crystal Structure Of A Fyve-type Domain From Caspase
Regulator Carp2
Length = 120
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Query: 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRC 54
P C +CG TA + C +C C +C ++ G + CL C
Sbjct: 20 PSCKSCGAHFANTARKQ---TCLDCKKNFCMTC-SSQVGNGPRLCLLC 63
>pdb|3EN1|B Chain B, Crystal Structure Of Toluene 2,3-Dioxygenase
pdb|3EQQ|B Chain B, Apo Toluene 2,3-Dioxygenase
Length = 187
Score = 30.0 bits (66), Expect = 6.0, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 63 LDDVGTKEPGNRSTMAAQLSNSENTGIHARH-ISNVSTV----DSEYNDESGNPIWKNRV 117
DD T G + + +S SEN RH +SNV V + EY S +++NR+
Sbjct: 81 FDDDATMMKGRLRKITSDVSWSENPASRTRHLVSNVMIVGAEAEGEYEISSAFIVYRNRL 140
Query: 118 E 118
E
Sbjct: 141 E 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,258,827
Number of Sequences: 62578
Number of extensions: 1213771
Number of successful extensions: 2403
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2398
Number of HSP's gapped (non-prelim): 12
length of query: 980
length of database: 14,973,337
effective HSP length: 108
effective length of query: 872
effective length of database: 8,214,913
effective search space: 7163404136
effective search space used: 7163404136
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)