Query 002020
Match_columns 980
No_of_seqs 426 out of 2017
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 14:42:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 5E-290 1E-294 2548.0 76.9 974 3-980 33-1093(1094)
2 PLN02400 cellulose synthase 100.0 1E-288 2E-293 2547.4 73.2 969 3-980 33-1085(1085)
3 PLN02915 cellulose synthase A 100.0 3E-287 6E-292 2528.6 77.8 971 3-980 12-1044(1044)
4 PLN02195 cellulose synthase A 100.0 7E-286 1E-290 2505.7 78.8 975 1-980 1-977 (977)
5 PLN02638 cellulose synthase A 100.0 2E-286 5E-291 2526.3 74.7 970 2-980 13-1079(1079)
6 PLN02189 cellulose synthase 100.0 2E-275 4E-280 2426.0 75.6 942 3-980 31-1040(1040)
7 PLN02248 cellulose synthase-li 100.0 1E-248 3E-253 2196.3 73.2 907 1-965 119-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 2E-215 5E-220 1865.5 45.9 713 253-971 1-719 (720)
9 PLN02190 cellulose synthase-li 100.0 9E-200 2E-204 1737.2 61.3 726 154-957 6-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 1E-190 2E-195 1669.1 65.6 707 153-955 8-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 1.5E-65 3.2E-70 622.8 50.5 491 174-931 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 2.7E-65 5.9E-70 620.7 48.1 473 176-931 189-674 (852)
13 PRK05454 glucosyltransferase M 100.0 8.8E-36 1.9E-40 358.8 45.0 362 172-775 40-420 (691)
14 cd04191 Glucan_BSP_ModH Glucan 100.0 1.4E-33 2.9E-38 304.9 23.4 181 418-726 67-253 (254)
15 COG1215 Glycosyltransferases, 100.0 1.1E-30 2.4E-35 298.1 26.9 233 250-730 53-290 (439)
16 PF14569 zf-UDP: Zinc-binding 100.0 2.9E-32 6.3E-37 237.4 3.7 57 2-58 5-61 (80)
17 PRK14583 hmsR N-glycosyltransf 100.0 1.3E-28 2.9E-33 285.1 35.2 233 248-731 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 7.5E-27 1.6E-31 270.4 36.2 288 247-783 45-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 9.4E-27 2E-31 266.6 35.9 236 247-731 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 2E-24 4.4E-29 253.0 34.9 265 249-757 64-355 (504)
21 cd06437 CESA_CaSu_A2 Cellulose 99.9 1E-24 2.2E-29 229.0 22.6 229 251-724 1-232 (232)
22 cd06421 CESA_CelA_like CESA_Ce 99.9 7.3E-25 1.6E-29 228.0 20.2 229 251-728 1-234 (234)
23 PRK11234 nfrB bacteriophage N4 99.9 4.6E-23 9.9E-28 250.3 31.1 171 434-730 132-335 (727)
24 cd06435 CESA_NdvC_like NdvC_li 99.9 8.8E-23 1.9E-27 214.0 22.5 173 420-730 58-234 (236)
25 cd06427 CESA_like_2 CESA_like_ 99.9 1.3E-22 2.7E-27 215.2 22.8 233 251-730 1-236 (241)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 3.7E-23 8E-28 215.4 8.3 224 251-723 1-228 (228)
27 TIGR03472 HpnI hopanoid biosyn 99.8 1.6E-19 3.4E-24 205.2 25.2 235 248-725 38-273 (373)
28 cd04190 Chitin_synth_C C-termi 99.8 7.9E-21 1.7E-25 203.1 12.4 52 673-726 190-243 (244)
29 PRK15489 nfrB bacteriophage N4 99.8 2.6E-18 5.6E-23 207.2 30.8 172 433-729 139-342 (703)
30 cd04192 GT_2_like_e Subfamily 99.8 4.6E-19 1E-23 183.2 19.2 227 255-723 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 2.6E-19 5.6E-24 184.2 15.4 195 251-723 1-195 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 8.1E-18 1.8E-22 175.8 19.6 59 433-500 62-120 (235)
33 COG2943 MdoH Membrane glycosyl 99.8 4.9E-15 1.1E-19 168.3 38.7 226 420-776 214-440 (736)
34 cd06439 CESA_like_1 CESA_like_ 99.7 7.7E-17 1.7E-21 170.7 21.5 224 247-726 25-250 (251)
35 TIGR03469 HonB hopene-associat 99.7 1.5E-15 3.3E-20 173.4 31.9 243 247-721 36-279 (384)
36 cd02525 Succinoglycan_BP_ExoA 99.7 5.2E-15 1.1E-19 155.0 21.7 76 621-730 158-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.7 1.1E-15 2.3E-20 156.4 14.0 143 455-724 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 8.8E-14 1.9E-18 143.2 14.3 114 420-540 52-175 (191)
39 cd06438 EpsO_like EpsO protein 99.4 3.5E-12 7.5E-17 129.8 14.1 62 433-500 61-123 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 1.9E-11 4.1E-16 124.7 17.7 121 251-495 1-122 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.3 6.7E-11 1.4E-15 120.9 16.9 65 420-498 57-122 (201)
42 PF13506 Glyco_transf_21: Glyc 99.3 1.9E-11 4.1E-16 125.8 11.6 157 433-722 15-175 (175)
43 PF14570 zf-RING_4: RING/Ubox 99.2 7.8E-12 1.7E-16 101.8 2.4 48 9-59 1-48 (48)
44 cd06433 GT_2_WfgS_like WfgS an 99.1 9.8E-10 2.1E-14 110.6 15.6 54 435-497 62-116 (202)
45 PF03142 Chitin_synth_2: Chiti 99.1 9.9E-09 2.1E-13 121.3 25.9 53 674-728 324-378 (527)
46 cd02522 GT_2_like_a GT_2_like_ 99.1 2.3E-09 5.1E-14 110.9 18.2 40 253-298 1-40 (221)
47 cd04196 GT_2_like_d Subfamily 99.1 1.5E-09 3.3E-14 111.1 15.0 56 433-497 64-120 (214)
48 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 4E-09 8.7E-14 116.1 19.0 109 255-480 2-110 (299)
49 cd06420 GT2_Chondriotin_Pol_N 99.1 3.7E-09 7.9E-14 106.2 16.3 42 435-482 66-107 (182)
50 cd04186 GT_2_like_c Subfamily 99.0 4.1E-09 9E-14 103.0 15.3 51 434-493 60-111 (166)
51 PLN02726 dolichyl-phosphate be 99.0 9E-09 2E-13 109.9 17.9 60 420-493 70-129 (243)
52 cd06913 beta3GnTL1_like Beta 1 99.0 9.6E-09 2.1E-13 107.2 16.3 41 255-300 1-41 (219)
53 cd06442 DPM1_like DPM1_like re 99.0 1.2E-08 2.5E-13 106.0 15.5 60 420-493 55-114 (224)
54 cd06423 CESA_like CESA_like is 99.0 9.1E-09 2E-13 99.5 13.4 62 420-495 55-117 (180)
55 cd02526 GT2_RfbF_like RfbF is 98.9 8.9E-09 1.9E-13 108.0 13.0 49 420-475 49-97 (237)
56 cd04185 GT_2_like_b Subfamily 98.9 3.2E-08 6.9E-13 101.6 16.6 60 420-490 53-112 (202)
57 PF00535 Glycos_transf_2: Glyc 98.8 3.6E-09 7.8E-14 102.6 6.3 110 420-541 55-166 (169)
58 cd04188 DPG_synthase DPG_synth 98.7 2.2E-07 4.9E-12 96.4 14.6 52 435-495 69-120 (211)
59 PRK10073 putative glycosyl tra 98.7 4.6E-07 9.9E-12 102.2 18.1 44 249-298 4-47 (328)
60 cd04179 DPM_DPG-synthase_like 98.6 3.4E-07 7.4E-12 92.0 12.5 65 420-498 56-120 (185)
61 PRK10018 putative glycosyl tra 98.6 1.1E-06 2.5E-11 97.0 17.4 52 419-480 61-112 (279)
62 KOG2571 Chitin synthase/hyalur 98.6 1.4E-06 3.1E-11 106.9 18.0 50 674-725 549-598 (862)
63 TIGR01556 rhamnosyltran L-rham 98.6 1.1E-06 2.3E-11 95.9 15.3 67 420-496 47-113 (281)
64 PRK10063 putative glycosyl tra 98.4 8.8E-06 1.9E-10 88.3 18.3 47 251-301 1-48 (248)
65 COG1216 Predicted glycosyltran 98.4 1.7E-05 3.7E-10 88.3 19.9 123 250-498 2-126 (305)
66 cd00761 Glyco_tranf_GTA_type G 98.4 8.8E-06 1.9E-10 76.7 14.0 52 433-493 62-114 (156)
67 cd04187 DPM1_like_bac Bacteria 98.3 3.8E-06 8.2E-11 84.9 11.9 103 420-541 57-160 (181)
68 PTZ00260 dolichyl-phosphate be 98.3 8.8E-05 1.9E-09 84.1 22.4 42 434-480 148-189 (333)
69 PF10111 Glyco_tranf_2_2: Glyc 98.2 2.7E-05 5.9E-10 85.8 16.9 62 435-502 75-136 (281)
70 PRK13915 putative glucosyl-3-p 98.1 2E-05 4.3E-10 88.3 11.3 51 434-492 101-152 (306)
71 PRK10714 undecaprenyl phosphat 97.5 0.0011 2.4E-08 75.0 13.7 40 435-479 77-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.2 0.0052 1.1E-07 69.6 14.4 159 433-722 155-314 (431)
73 COG0463 WcaA Glycosyltransfera 97.1 0.0038 8.3E-08 59.9 10.7 44 250-299 2-45 (291)
74 cd02511 Beta4Glucosyltransfera 96.9 0.0074 1.6E-07 64.2 11.7 42 435-481 58-99 (229)
75 COG5175 MOT2 Transcriptional r 96.4 0.0013 2.9E-08 72.8 1.8 54 7-63 15-68 (480)
76 PF14446 Prok-RING_1: Prokaryo 95.2 0.013 2.9E-07 49.5 2.4 49 2-58 1-51 (54)
77 cd02514 GT13_GLCNAC-TI GT13_GL 95.1 0.22 4.7E-06 57.1 12.4 41 254-298 3-43 (334)
78 PF02364 Glucan_synthase: 1,3- 95.0 0.38 8.2E-06 60.3 14.9 102 617-754 381-483 (817)
79 TIGR00570 cdk7 CDK-activating 94.5 0.036 7.8E-07 62.2 4.2 54 5-60 2-55 (309)
80 KOG2978 Dolichol-phosphate man 90.0 1.7 3.7E-05 46.0 9.2 53 419-481 64-116 (238)
81 cd00162 RING RING-finger (Real 89.5 0.36 7.7E-06 37.3 3.0 44 8-57 1-44 (45)
82 smart00504 Ubox Modified RING 87.8 0.55 1.2E-05 39.9 3.3 47 8-62 3-49 (63)
83 PF05290 Baculo_IE-1: Baculovi 87.0 0.39 8.4E-06 47.8 2.2 50 8-61 82-134 (140)
84 PF14447 Prok-RING_4: Prokaryo 76.1 1.3 2.9E-05 37.8 1.2 48 6-63 7-54 (55)
85 KOG2977 Glycosyltransferase [G 73.5 20 0.00044 40.4 9.6 47 252-302 68-120 (323)
86 KOG2932 E3 ubiquitin ligase in 73.4 2.1 4.6E-05 48.0 2.2 41 18-58 83-133 (389)
87 PHA02929 N1R/p28-like protein; 72.7 4.1 8.9E-05 44.7 4.2 54 4-58 172-226 (238)
88 PF13639 zf-RING_2: Ring finge 70.8 2.3 4.9E-05 34.0 1.3 43 8-55 2-44 (44)
89 PF03604 DNA_RNApol_7kD: DNA d 70.1 3.3 7.2E-05 31.7 1.9 26 8-35 2-27 (32)
90 smart00659 RPOLCX RNA polymera 69.5 2.7 5.9E-05 34.3 1.5 26 8-35 4-29 (44)
91 PHA02862 5L protein; Provision 66.5 3.7 8E-05 41.6 2.0 47 6-58 2-52 (156)
92 KOG3800 Predicted E3 ubiquitin 66.1 4.3 9.3E-05 45.4 2.6 51 7-59 1-51 (300)
93 PRK14559 putative protein seri 65.9 2.9 6.3E-05 52.0 1.4 45 8-58 3-51 (645)
94 smart00184 RING Ring finger. E 64.6 6.2 0.00013 29.0 2.5 39 9-54 1-39 (39)
95 PRK14503 mannosyl-3-phosphogly 64.4 13 0.00028 43.1 6.0 40 432-476 141-182 (393)
96 PF13920 zf-C3HC4_3: Zinc fing 63.1 6.3 0.00014 32.4 2.5 45 7-59 3-48 (50)
97 PF13712 Glyco_tranf_2_5: Glyc 63.1 22 0.00047 38.3 7.3 48 435-490 41-89 (217)
98 KOG3737 Predicted polypeptide 62.9 23 0.0005 41.4 7.6 48 246-296 150-197 (603)
99 PRK12495 hypothetical protein; 62.2 4.4 9.5E-05 43.7 1.7 35 24-65 41-75 (226)
100 PHA02825 LAP/PHD finger-like p 61.2 6.8 0.00015 40.4 2.8 51 4-60 6-60 (162)
101 PF14471 DUF4428: Domain of un 58.7 5.1 0.00011 33.8 1.2 28 8-41 1-28 (51)
102 TIGR02460 osmo_MPGsynth mannos 58.3 19 0.00042 41.5 5.9 40 432-476 140-181 (381)
103 KOG2068 MOT2 transcription fac 58.2 8.2 0.00018 44.0 3.1 52 6-61 249-300 (327)
104 PRK00420 hypothetical protein; 57.1 4.4 9.5E-05 39.6 0.6 30 26-61 24-53 (112)
105 PF13923 zf-C3HC4_2: Zinc fing 56.8 8.9 0.00019 29.9 2.2 39 9-54 1-39 (39)
106 KOG0823 Predicted E3 ubiquitin 56.4 7.3 0.00016 42.4 2.2 47 8-62 49-98 (230)
107 PF00097 zf-C3HC4: Zinc finger 54.5 8.4 0.00018 30.0 1.8 40 9-54 1-41 (41)
108 smart00291 ZnF_ZZ Zinc-binding 54.4 10 0.00023 30.6 2.3 38 5-47 3-41 (44)
109 KOG0916 1,3-beta-glucan syntha 52.7 4.4E+02 0.0096 36.1 17.0 111 618-764 1146-1258(1679)
110 PF02318 FYVE_2: FYVE-type zin 50.6 2.3 5E-05 41.6 -2.4 45 5-52 53-98 (118)
111 PF03966 Trm112p: Trm112p-like 48.6 2.2 4.8E-05 37.6 -2.6 22 37-58 42-63 (68)
112 PF06906 DUF1272: Protein of u 47.7 20 0.00043 31.0 3.0 46 7-58 6-51 (57)
113 PF11077 DUF2616: Protein of u 46.5 7.5 0.00016 40.7 0.4 26 9-38 55-81 (173)
114 COG4858 Uncharacterized membra 46.4 68 0.0015 34.2 7.2 61 880-940 99-162 (226)
115 KOG3736 Polypeptide N-acetylga 46.0 27 0.00059 43.0 5.1 49 247-298 138-186 (578)
116 PF09488 Osmo_MPGsynth: Mannos 46.0 24 0.00052 41.0 4.3 39 434-475 142-180 (381)
117 smart00249 PHD PHD zinc finger 45.4 10 0.00023 29.4 1.0 43 8-54 1-47 (47)
118 PRK04023 DNA polymerase II lar 44.2 15 0.00032 47.4 2.6 44 4-58 624-673 (1121)
119 PRK14890 putative Zn-ribbon RN 43.9 33 0.00071 30.0 3.8 51 3-55 4-55 (59)
120 COG5114 Histone acetyltransfer 43.4 8.2 0.00018 43.6 0.2 36 2-41 1-37 (432)
121 KOG0006 E3 ubiquitin-protein l 43.2 19 0.00041 40.8 2.9 38 3-41 312-352 (446)
122 KOG2068 MOT2 transcription fac 42.9 9.5 0.00021 43.5 0.6 32 32-63 1-34 (327)
123 PRK00398 rpoP DNA-directed RNA 42.8 15 0.00032 30.0 1.5 29 7-36 4-32 (46)
124 cd02335 ZZ_ADA2 Zinc finger, Z 42.5 15 0.00033 30.4 1.6 31 8-42 2-33 (49)
125 PF13704 Glyco_tranf_2_4: Glyc 42.4 46 0.001 30.4 5.0 28 436-466 58-85 (97)
126 TIGR02443 conserved hypothetic 40.0 18 0.0004 31.5 1.7 30 5-34 8-40 (59)
127 KOG0457 Histone acetyltransfer 39.8 14 0.0003 43.6 1.3 33 5-41 13-46 (438)
128 PF04641 Rtf2: Rtf2 RING-finge 39.2 25 0.00055 38.9 3.2 51 7-63 114-165 (260)
129 PF03452 Anp1: Anp1; InterPro 38.6 3.5E+02 0.0077 30.6 11.9 56 247-306 21-78 (269)
130 PRK14502 bifunctional mannosyl 38.6 56 0.0012 41.2 6.2 42 432-476 145-186 (694)
131 COG0551 TopA Zn-finger domain 38.4 20 0.00043 35.9 2.0 48 5-56 16-68 (140)
132 PRK11827 hypothetical protein; 38.3 22 0.00048 31.2 1.9 25 34-58 12-36 (60)
133 PLN03208 E3 ubiquitin-protein 38.1 34 0.00073 36.6 3.7 51 5-62 17-82 (193)
134 PF07649 C1_3: C1-like domain; 37.5 17 0.00036 27.0 1.0 28 8-39 2-29 (30)
135 KOG1734 Predicted RING-contain 37.0 12 0.00026 41.6 0.2 53 3-57 221-279 (328)
136 COG3813 Uncharacterized protei 36.9 30 0.00064 31.4 2.5 46 7-58 6-51 (84)
137 cd02249 ZZ Zinc finger, ZZ typ 36.9 25 0.00054 28.7 2.0 30 8-42 2-32 (46)
138 cd00899 b4GalT Beta-4-Galactos 36.7 24 0.00053 38.4 2.4 82 616-728 108-200 (219)
139 PF14634 zf-RING_5: zinc-RING 36.7 31 0.00067 27.7 2.5 43 9-56 2-44 (44)
140 COG1996 RPC10 DNA-directed RNA 36.4 13 0.00028 31.3 0.3 32 3-35 3-34 (49)
141 PF13717 zinc_ribbon_4: zinc-r 35.0 15 0.00032 28.7 0.4 14 50-63 4-17 (36)
142 PRK07220 DNA topoisomerase I; 34.8 19 0.00042 45.7 1.5 49 7-57 590-644 (740)
143 TIGR00599 rad18 DNA repair pro 34.0 34 0.00074 40.4 3.3 47 6-60 26-72 (397)
144 COG0068 HypF Hydrogenase matur 32.9 19 0.00041 45.0 1.0 54 5-58 100-183 (750)
145 PRK15103 paraquat-inducible me 32.6 30 0.00064 41.2 2.5 8 50-57 237-244 (419)
146 KOG0311 Predicted E3 ubiquitin 32.6 11 0.00023 43.5 -1.1 45 8-58 45-89 (381)
147 PF11781 RRN7: RNA polymerase 32.5 26 0.00056 27.6 1.3 31 1-33 1-33 (36)
148 PHA02926 zinc finger-like prot 31.6 48 0.001 36.3 3.6 56 4-59 168-230 (242)
149 PF00628 PHD: PHD-finger; Int 31.4 32 0.0007 28.0 1.8 44 8-55 1-49 (51)
150 PRK12380 hydrogenase nickel in 30.9 14 0.00031 36.0 -0.5 25 26-57 71-95 (113)
151 cd03031 GRX_GRX_like Glutaredo 29.9 36 0.00077 34.8 2.2 43 5-56 98-141 (147)
152 COG2888 Predicted Zn-ribbon RN 29.7 63 0.0014 28.4 3.3 48 6-55 9-57 (61)
153 KOG3738 Predicted polypeptide 29.5 60 0.0013 38.3 4.1 51 247-300 120-170 (559)
154 PF09484 Cas_TM1802: CRISPR-as 29.4 26 0.00057 43.3 1.4 43 4-47 196-254 (593)
155 cd00350 rubredoxin_like Rubred 29.3 16 0.00035 27.8 -0.3 16 42-57 11-26 (33)
156 PRK11595 DNA utilization prote 29.1 34 0.00073 37.1 2.0 40 6-58 5-44 (227)
157 TIGR02921 PEP_integral PEP-CTE 29.1 1.2E+03 0.026 29.4 14.7 24 758-781 46-69 (952)
158 PRK08359 transcription factor; 29.0 21 0.00046 37.6 0.5 34 1-42 1-40 (176)
159 KOG3507 DNA-directed RNA polym 28.9 23 0.0005 30.8 0.6 26 8-35 22-47 (62)
160 KOG1785 Tyrosine kinase negati 28.9 19 0.00042 41.9 0.2 51 2-59 365-416 (563)
161 COG4416 Com Mu-like prophage p 26.8 36 0.00077 29.2 1.3 23 36-58 7-34 (60)
162 KOG2792 Putative cytochrome C 26.6 52 0.0011 36.8 2.8 67 233-334 158-228 (280)
163 PF02709 Glyco_transf_7C: N-te 26.3 25 0.00054 32.0 0.3 51 616-696 16-66 (78)
164 smart00744 RINGv The RING-vari 25.8 86 0.0019 26.1 3.4 45 8-55 1-49 (49)
165 cd02336 ZZ_RSC8 Zinc finger, Z 25.4 43 0.00093 27.7 1.5 33 8-45 2-35 (45)
166 PF13240 zinc_ribbon_2: zinc-r 25.4 19 0.00042 25.5 -0.4 13 45-57 10-22 (23)
167 PRK14973 DNA topoisomerase I; 25.4 41 0.00088 44.0 2.1 48 7-57 589-644 (936)
168 TIGR01206 lysW lysine biosynth 25.2 47 0.001 28.6 1.7 26 7-33 3-30 (54)
169 PF07282 OrfB_Zn_ribbon: Putat 25.0 48 0.001 28.9 1.9 33 5-38 27-59 (69)
170 PRK12438 hypothetical protein; 24.9 1.4E+03 0.029 30.7 15.2 47 910-956 258-304 (991)
171 PF13248 zf-ribbon_3: zinc-rib 24.7 21 0.00044 25.9 -0.4 15 43-57 11-25 (26)
172 PF09526 DUF2387: Probable met 24.5 47 0.001 30.1 1.7 30 5-34 7-39 (71)
173 PRK14873 primosome assembly pr 24.1 56 0.0012 41.2 2.9 11 48-58 422-432 (665)
174 PF13896 Glyco_transf_49: Glyc 23.7 82 0.0018 36.1 3.9 45 441-490 120-164 (317)
175 PF13719 zinc_ribbon_5: zinc-r 23.6 31 0.00066 27.1 0.3 13 50-62 4-16 (37)
176 PF00643 zf-B_box: B-box zinc 23.3 41 0.0009 26.4 1.1 31 5-42 2-32 (42)
177 PF15050 SCIMP: SCIMP protein 23.1 98 0.0021 30.8 3.7 40 818-858 2-46 (133)
178 TIGR00143 hypF [NiFe] hydrogen 22.8 29 0.00064 44.0 0.2 54 5-58 67-150 (711)
179 PRK00564 hypA hydrogenase nick 21.9 29 0.00063 34.1 -0.1 26 26-58 72-98 (117)
180 PRK03681 hypA hydrogenase nick 21.8 26 0.00057 34.2 -0.4 25 26-57 71-96 (114)
181 COG1499 NMD3 NMD protein affec 21.5 51 0.0011 38.5 1.7 41 251-297 191-234 (355)
182 PF11238 DUF3039: Protein of u 21.5 17 0.00037 31.6 -1.5 8 33-40 44-51 (58)
183 PRK07219 DNA topoisomerase I; 21.0 50 0.0011 42.7 1.7 50 6-58 688-743 (822)
184 COG1326 Uncharacterized archae 20.9 42 0.00091 35.9 0.8 33 1-33 1-38 (201)
185 KOG2857 Predicted MYND Zn-fing 20.9 58 0.0013 33.2 1.7 41 6-58 5-46 (157)
186 cd00065 FYVE FYVE domain; Zinc 20.7 43 0.00092 27.9 0.7 37 6-45 2-38 (57)
187 PTZ00293 thymidine kinase; Pro 20.6 45 0.00097 36.2 1.0 35 7-41 138-177 (211)
188 TIGR00595 priA primosomal prot 20.5 47 0.001 40.4 1.2 9 254-262 373-381 (505)
189 PF03107 C1_2: C1 domain; Int 20.4 65 0.0014 24.0 1.5 28 8-39 2-29 (30)
190 PF12906 RINGv: RING-variant d 20.0 1E+02 0.0022 25.4 2.8 43 9-54 1-47 (47)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=5.3e-290 Score=2548.04 Aligned_cols=974 Identities=65% Similarity=1.212 Sum_probs=891.0
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC-------------CCcccccCCC
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD-------------ENLLDDVGTK 69 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~-------------e~~~dd~~~~ 69 (980)
+.++|+||||||+||+|+|||+|||||||+|||||||||||||||+|+||||||+|+ |+|+||+|||
T Consensus 33 ~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~e 112 (1094)
T PLN02436 33 ELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEEEDDIDDLENE 112 (1094)
T ss_pred ccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCccccccchhhhhh
Confidence 467899999999999999999999999999999999999999999999999999993 6678999999
Q ss_pred CCCCCC-----c----c-ccccc-----------------------------CCCC-C---Ccc-cC----------Cc-
Q 002020 70 EPGNRS-----T----M-AAQLS-----------------------------NSEN-T---GIH-AR----------HI- 94 (980)
Q Consensus 70 ~~~~~~-----~----~-~~~~~-----------------------------~~~~-~---~~~-~~----------~~- 94 (980)
||+... . | +++++ ++|. + .+| +. .+
T Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1094)
T PLN02436 113 FDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGEEDVEISSDRHALIVPPSTGHGNRVH 192 (1094)
T ss_pred hcCcccccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCcccCccCCcccccccCCccccccccc
Confidence 987511 0 1 11111 1110 1 122 11 11
Q ss_pred ----------cCCcccCCCCC---CCCCccccchhhhHHHhhhhhhhhhcccc-c-cccCCC-CCCCcccccCCCccCCC
Q 002020 95 ----------SNVSTVDSEYN---DESGNPIWKNRVESWKDKKNKKKKTAAKA-E-KEAEVP-PAQQMEENQQSPEAALP 158 (980)
Q Consensus 95 ----------~~~~~~~~~~~---~~~g~~~w~~~~~~~k~~~~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~p 158 (980)
.+.+.+||+++ |||||++||||||+||+||+|+.++.... + .+++++ ++.+++|++++|++++|
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 272 (1094)
T PLN02436 193 PMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQP 272 (1094)
T ss_pred ccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhcccccccccccccCCCCCCCCCCcccccccccCCC
Confidence 23457899999 89999999999999999999554432221 1 112332 33346788889999999
Q ss_pred CceeeecCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhh
Q 002020 159 LSTLIPVPRSKLGPYRTVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLS 238 (980)
Q Consensus 159 l~~~~~~~~~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~ 238 (980)
|+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|||+
T Consensus 273 L~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~ 352 (1094)
T PLN02436 273 LSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLS 352 (1094)
T ss_pred ceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhh
Q 002020 239 ARFEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFC 318 (980)
Q Consensus 239 ~~~~~~~~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfC 318 (980)
+|||+|+++++||+|||||+|+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|||||
T Consensus 353 ~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFC 432 (1094)
T PLN02436 353 LRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFC 432 (1094)
T ss_pred HHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCcc
Q 002020 319 KKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPG 398 (980)
Q Consensus 319 kk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~ 398 (980)
|||+||||+||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++++|||+
T Consensus 433 kK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~ 512 (1094)
T PLN02436 433 KKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPG 512 (1094)
T ss_pred cccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh
Q 002020 399 MIQVFLGHSGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM 478 (980)
Q Consensus 399 iiqv~l~~~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff 478 (980)
|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+|||||
T Consensus 513 IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfl 592 (1094)
T PLN02436 513 MIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM 592 (1094)
T ss_pred ceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHhhhhh
Confidence 99999999998999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCC
Q 002020 479 MDPQVGRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSC 558 (980)
Q Consensus 479 ~Dp~~g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~ 558 (980)
|||+.|+++|||||||+|+|+|++|||+|||+||||++|+|+||+|||+|+||||+|||+||||++||...+.+...++|
T Consensus 593 lD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~ 672 (1094)
T PLN02436 593 MDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNC 672 (1094)
T ss_pred cCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeeeeeeccCCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999776666667789
Q ss_pred CCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhcccc---chhhHhHhhhhhhhhhccCchHHHHHHHHHhcC
Q 002020 559 SWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNY---DDYERSMLISQMSFEKTFGLSSVFIESTLMENG 635 (980)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~G 635 (980)
|++|||+|||..++++++.+....+.++.+...+++++++++++ .+.+++.+++++.++++||+|.+|++|++++.|
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~ 752 (1094)
T PLN02436 673 WPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENG 752 (1094)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhc
Confidence 99999988875444322221111112222333345556666543 344777788999999999999999999999999
Q ss_pred CCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHH
Q 002020 636 GVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLH 715 (980)
Q Consensus 636 G~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~ 715 (980)
|.+.+.+.+++++||+|||||+||++|+||+||||+|+|+|||+.||++||++|||++|++|++++|.|+||+|+.+++.
T Consensus 753 ~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~ 832 (1094)
T PLN02436 753 GVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLH 832 (1094)
T ss_pred CCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHH
Confidence 99988888999999999999999999999999999999999999999999999999999988878899999999999999
Q ss_pred HHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHH
Q 002020 716 QVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFL 795 (980)
Q Consensus 716 QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl 795 (980)
||+|||+|++||++++++|+++|+. ++|+++||++|+++++||+++++.++|+++|++||++|++++|.++.+++++|+
T Consensus 833 Qr~RWA~G~lQIffsr~nPl~~g~~-~~L~l~QRL~Yl~~~ly~l~Slp~liY~~lP~l~LL~G~~i~P~vs~~~~~~fi 911 (1094)
T PLN02436 833 QVLRWALGSVEIFLSRHCPIWYGYG-GGLKWLERFSYINSVVYPWTSIPLIVYCTLPAICLLTGKFIVPEISNYASILFM 911 (1094)
T ss_pred HHHHHhhcceeeeeccCCcchhccc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecCccchHHHHHHH
Confidence 9999999999999999999997663 459999999999999999999999999999999999999999999888888999
Q ss_pred HHHHHHHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccccccceeeecccc
Q 002020 796 GLFLSIIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDLEFGELYIIKWTT 875 (980)
Q Consensus 796 ~lfls~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~ 875 (980)
++|++++++++||++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|.||+|..++++++++|.|+|++
T Consensus 912 ~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLggs~~~F~VTsK~~d~~~~a~ly~f~~S~ 991 (1094)
T PLN02436 912 ALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFTVTSKAADDGEFSELYLFKWTS 991 (1094)
T ss_pred HHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcccceecccccccccccceeeeccee
Confidence 99999999999999999999999999999999999999999999999999999999999999988776778999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHHHHHHHHHHHhh
Q 002020 876 LLIPPTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLV 955 (980)
Q Consensus 876 l~iP~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~s~~l~~~~~~l 955 (980)
+++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+||||++||++||++|+||
T Consensus 992 L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~lyPf~kgL~gr~~r~P~~v~v~s~lla~~~~l~ 1071 (1094)
T PLN02436 992 LLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGKQDRMPTIILVWSILLASILTLL 1071 (1094)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCcccCCCcccccccccccC
Q 002020 956 WVKIDPFVEKTNSATLGQTCISIDC 980 (980)
Q Consensus 956 wv~~~~~~~~~~~~~~~~~~~~~~~ 980 (980)
||+|+||+++ +||++ ++| |++|
T Consensus 1072 ~v~~~~~~~~-~~~~~-~~~-~~~~ 1093 (1094)
T PLN02436 1072 WVRVNPFVSK-GGPVL-EIC-GLDC 1093 (1094)
T ss_pred HeeeccccCC-CCccc-ccc-CccC
Confidence 9999999999 99998 999 9999
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=9.9e-289 Score=2547.39 Aligned_cols=969 Identities=68% Similarity=1.205 Sum_probs=881.3
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC-------------CCcccccCCC
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD-------------ENLLDDVGTK 69 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~-------------e~~~dd~~~~ 69 (980)
+.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||+ |||+||+|||
T Consensus 33 ~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GDeeedd~DDlenE 112 (1085)
T PLN02400 33 NLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGDEDEDDVDDLENE 112 (1085)
T ss_pred ccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcccccccchhhhhh
Confidence 568999999999999999999999999999999999999999999999999999993 6778999999
Q ss_pred CCCCCC------ccc-----------------ccccCCC-C-C--C----cc-c------------CC-----------c
Q 002020 70 EPGNRS------TMA-----------------AQLSNSE-N-T--G----IH-A------------RH-----------I 94 (980)
Q Consensus 70 ~~~~~~------~~~-----------------~~~~~~~-~-~--~----~~-~------------~~-----------~ 94 (980)
||+... .+. ..++++| . + . +| + +. .
T Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~ 192 (1085)
T PLN02400 113 FNYAQGNGKARHQWQGEDIELSSSSRHESQPIPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQP 192 (1085)
T ss_pred hccccccccccccccccCccccCcccccCCCCccccCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccC
Confidence 987521 010 0122332 1 1 0 11 1 01 1
Q ss_pred cCCcccCCCCC---CCCCccccchhhhHHHhhhhhhhhhccccc---cccCC-CCCCCcccccCCCccCCCCceeeecCC
Q 002020 95 SNVSTVDSEYN---DESGNPIWKNRVESWKDKKNKKKKTAAKAE---KEAEV-PPAQQMEENQQSPEAALPLSTLIPVPR 167 (980)
Q Consensus 95 ~~~~~~~~~~~---~~~g~~~w~~~~~~~k~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~pl~~~~~~~~ 167 (980)
.+.+.+|++|| |||||++||||||+||+||+|++....++. +++++ +.+++++|++++|++++||+||+++++
T Consensus 193 ~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~ 272 (1085)
T PLN02400 193 VPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPS 272 (1085)
T ss_pred CCccccCccccccccccCcHHHHHHHHHHHhhhhhhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCc
Confidence 33567999999 999999999999999999998766322211 11122 123347888999999999999999999
Q ss_pred CCCcchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhhhhhccCCCC
Q 002020 168 SKLGPYRTVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLSARFEREGEP 247 (980)
Q Consensus 168 ~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~~~~~~~~~~ 247 (980)
++|+|||++++++|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++|||+|+++
T Consensus 273 ~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~ 352 (1085)
T PLN02400 273 SRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEP 352 (1085)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCC
Q 002020 248 SELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRA 327 (980)
Q Consensus 248 ~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~ 327 (980)
++||+|||||+|+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+||||+
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRa 432 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCC
Q 002020 328 PEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHS 407 (980)
Q Consensus 328 Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~ 407 (980)
||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++++|||+|||||+++.
T Consensus 433 Pe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~ 512 (1085)
T PLN02400 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHS 512 (1085)
T ss_pred HHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCce
Q 002020 408 GACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDV 487 (980)
Q Consensus 408 g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v 487 (980)
|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++
T Consensus 513 ~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~ 592 (1085)
T PLN02400 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKT 592 (1085)
T ss_pred CCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCcee
Confidence 99899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 488 CYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCC 567 (980)
Q Consensus 488 ~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~ 567 (980)
|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+|+||||+|||+||||++|+..+....... .||+||
T Consensus 593 afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~-----~~~~~~ 667 (1085)
T PLN02400 593 CYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNI-----IVKSCC 667 (1085)
T ss_pred EEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceeeeeeccCCCccccccccccc-----cccccc
Confidence 999999999999999999999999999999999999999999999999999999999986533211111 124455
Q ss_pred CCCCCCCcchhh---Hhh-hhhhhhHHHHhhhhhhcccc---chhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCC
Q 002020 568 CPSKKPSKDLSE---AYR-DAKREELDAAIFNLKEIDNY---DDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDS 640 (980)
Q Consensus 568 ~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~ 640 (980)
+ +++++++.+. .++ ..++.+.+.+++++++++++ .+.++++++++++++++||+|.+|++|++++.||.+.+
T Consensus 668 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~ 746 (1085)
T PLN02400 668 G-SRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPS 746 (1085)
T ss_pred c-ccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCC
Confidence 5 3333222211 111 12233344556777777654 23477778899999999999999999999999999988
Q ss_pred CCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHh
Q 002020 641 ANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRW 720 (980)
Q Consensus 641 ~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RW 720 (980)
.+++++++||+|||||+||++|+||+||||+|+|+|||+.||++||++||||+|++|+++++.|+||+|+.+++.||+||
T Consensus 747 ~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RW 826 (1085)
T PLN02400 747 TNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRW 826 (1085)
T ss_pred CCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999878899999999999999999999
Q ss_pred hchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHH
Q 002020 721 ALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLS 800 (980)
Q Consensus 721 a~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lfls 800 (980)
++|++||+++++||+++|+. ++|+++|||+|+++++||++++++++|+++|++||++|++++|.++++++++|+++|++
T Consensus 827 A~G~lqI~~sr~nPl~~G~~-~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l~LltG~~i~P~vs~~~~~~fi~lf~~ 905 (1085)
T PLN02400 827 ALGSIEILLSRHCPIWYGYN-GRLKLLERLAYINTIVYPITSIPLLAYCVLPAFCLITNKFIIPEISNYASMWFILLFIS 905 (1085)
T ss_pred hhcchheeeccCCccccccC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCccchHHHHHHHHHHHH
Confidence 99999999999999997653 55999999999999999999999999999999999999999999988888889999999
Q ss_pred HHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCccc-ccccceeeeccccchhH
Q 002020 801 IIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADD-LEFGELYIIKWTTLLIP 879 (980)
Q Consensus 801 ~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~-~~~~~ly~f~ws~l~iP 879 (980)
++++++||++|+|+++++||||||||+|.++|+|+||++++++|+|++++++|.||+|..++ +.++++|.|+||++++|
T Consensus 906 ~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~VTsK~~d~~~~~~ely~f~~s~L~iP 985 (1085)
T PLN02400 906 IFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIP 985 (1085)
T ss_pred HHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCcccceecCCcccccccccceeeecccchhHH
Confidence 99999999999999999999999999999999999999999999999999999999998764 35678999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHHHHHHHHHHHhheeEe
Q 002020 880 PTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKI 959 (980)
Q Consensus 880 ~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~s~~l~~~~~~lwv~~ 959 (980)
+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+||||++||++||++|+||||+|
T Consensus 986 ~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR~~r~P~~v~~~s~lla~~~~l~~v~~ 1065 (1085)
T PLN02400 986 PTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRI 1065 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999888889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCc-ccccccccccC
Q 002020 960 DPFVEKTNSA-TLGQTCISIDC 980 (980)
Q Consensus 960 ~~~~~~~~~~-~~~~~~~~~~~ 980 (980)
+||+++++|| .+ ++| |++|
T Consensus 1066 ~~~~~~~~~~~~~-~~~-~~~~ 1085 (1085)
T PLN02400 1066 DPFVSDTTKAAAN-GQC-GVNC 1085 (1085)
T ss_pred cccccCCCCchhH-hhc-CcCC
Confidence 9999999999 65 999 9999
No 3
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=2.8e-287 Score=2528.58 Aligned_cols=971 Identities=70% Similarity=1.239 Sum_probs=893.2
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC--------------CCcccccCC
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD--------------ENLLDDVGT 68 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~--------------e~~~dd~~~ 68 (980)
..++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||+ |+++||+|+
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~~~ 91 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDFED 91 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhhhh
Confidence 457899999999999999999999999999999999999999999999999999993 456799999
Q ss_pred CCCCCCC----cc-cccccCCCCC--C--c-ccC--Cc-----cCCcccCCCCCCCCCccccchhhhHHHhhhhhhhhhc
Q 002020 69 KEPGNRS----TM-AAQLSNSENT--G--I-HAR--HI-----SNVSTVDSEYNDESGNPIWKNRVESWKDKKNKKKKTA 131 (980)
Q Consensus 69 ~~~~~~~----~~-~~~~~~~~~~--~--~-~~~--~~-----~~~~~~~~~~~~~~g~~~w~~~~~~~k~~~~~~~~~~ 131 (980)
|||+... .| .+++++++.. + . |+. .+ .+-..+||+++ ||||++||||||+||+||+|++.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~wk~r~~~wk~~~~~~~~~~ 170 (1044)
T PLN02915 92 EFQIKSPQDHEPVHQNVFAGSENGDYNAQQWRPGGPAFSSTGSVAGKDLEAERE-GYGNAEWKDRVDKWKTRQEKRGLVN 170 (1044)
T ss_pred hhccccccccchhhhhhccCCCCccccccccCCCCccccCCCCcCCCCcCcccc-CcCCHHHHHHHHHHHhhhhhhcccc
Confidence 9987532 13 3455544321 1 1 221 11 12345888888 9999999999999999999776544
Q ss_pred cccccccCCCCCCCcccccCCCccCCCCceeeecCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH
Q 002020 132 AKAEKEAEVPPAQQMEENQQSPEAALPLSTLIPVPRSKLGPYRTVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEI 211 (980)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~ 211 (980)
+..+ +++++.+++|++++++.++||+||+++++++++|||++++++|+++++||+||++|++++++|+|+++++||+
T Consensus 171 ~~~~---~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~ 247 (1044)
T PLN02915 171 KDDS---DDGDDKGDEEEYLLAEARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEI 247 (1044)
T ss_pred cccc---CCCCCCCCcccccccccCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHH
Confidence 4322 1112223678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccccccccchhHhHhhhhhccCCCCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEE
Q 002020 212 WFAFSWVLDQFPKWSPVDRETYIDRLSARFEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYV 291 (980)
Q Consensus 212 ~f~~~wil~~~~kw~pv~r~~~~d~L~~~~~~~~~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yv 291 (980)
||+|+|+|+|++||+||+|+||+|||++|||+++++++||+|||||+|+||.||||++|+||||||||+|||+|||+|||
T Consensus 248 wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYv 327 (1044)
T PLN02915 248 WFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYV 327 (1044)
T ss_pred HHHHHHHHccCccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEE
Confidence 99999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred ecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002020 292 SDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAK 371 (980)
Q Consensus 292 sDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~ 371 (980)
||||+|+||||||.|||+|||+||||||||+||||+||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++
T Consensus 328 SDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~ 407 (1044)
T PLN02915 328 SDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAK 407 (1044)
T ss_pred ecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccC
Q 002020 372 AQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLT 451 (980)
Q Consensus 372 ~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~t 451 (980)
++++|+++|.|+|||+|||++.+|||+|||||+++.|+.|.+|++||+||||||||||||+||+||||||||+||||+||
T Consensus 408 ~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmT 487 (1044)
T PLN02915 408 AQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLT 487 (1044)
T ss_pred hccCCcccccccCCccCCCCCCCCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheee
Confidence 99999999999999999999999999999999999998999999999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCcccccc
Q 002020 452 NAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGT 531 (980)
Q Consensus 452 ng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGT 531 (980)
|||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|||+||||++|+|+||+|||+||||
T Consensus 488 NaP~iLNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGT 567 (1044)
T PLN02915 488 NAPFMLNLDCDHYINNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGT 567 (1044)
T ss_pred cCcEEEeeccccccCcchhhHhhceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHh-------------hh------------hhh
Q 002020 532 GCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLSEAY-------------RD------------AKR 586 (980)
Q Consensus 532 g~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~------------~~~ 586 (980)
||+|||+||||++||..++.++.++.|++.|||+||+..+++++..+++. +. ...
T Consensus 568 GCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1044)
T PLN02915 568 GCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYG 647 (1044)
T ss_pred CceeeeeeecCcCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999988777888888999999888876655433211100 00 011
Q ss_pred hhHHHHhhhhhhcccc----chhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccccccccc
Q 002020 587 EELDAAIFNLKEIDNY----DDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKT 662 (980)
Q Consensus 587 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T 662 (980)
.+.+.+++++++++++ ++.+++++++++.++++||+|.+|++|++++.+|.+.+.+.+++++||+|||||+||++|
T Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T 727 (1044)
T PLN02915 648 RKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKT 727 (1044)
T ss_pred cccccccccccccccccccccchhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccC
Confidence 1223345667777653 566888899999999999999999999999999999888899999999999999999999
Q ss_pred ccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhHHHHHhhcCccccccCCC
Q 002020 663 EWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGG 742 (980)
Q Consensus 663 ~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQil~sk~~Pl~~~~~~g 742 (980)
+||+||||.|+|+|||+.||++||++|||++|++|+++++.|+||+|+.++++||+||++|++||++++++|+++++ ++
T Consensus 728 ~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~-~~ 806 (1044)
T PLN02915 728 EWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAY-GG 806 (1044)
T ss_pred chhHhhCccccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCccccc-CC
Confidence 99999999999999999999999999999999998788999999999999999999999999999999999999755 35
Q ss_pred CCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHhhhccCcccccccch
Q 002020 743 RLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLSIIATSVLELRWSGVTIEDLWRN 822 (980)
Q Consensus 743 rL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lfls~~~~~lLe~~w~G~s~~~wWr~ 822 (980)
+|+++||++|+++++||+.+++.++|+++|++||++|++++|.++...+++|+++|+++++++++|++|+|+++++||||
T Consensus 807 ~L~l~QRL~Yl~~~~yp~~slp~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrn 886 (1044)
T PLN02915 807 KLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRN 886 (1044)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh
Confidence 69999999999999999999999999999999999999999988777777888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccc--cccceeeeccccchhHHHHHHHHHHHHHHHHHHHhhh
Q 002020 823 EQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDL--EFGELYIIKWTTLLIPPTSLIIVNMVGVVAGFSDALN 900 (980)
Q Consensus 823 e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~--~~~~ly~f~ws~l~iP~~~Llllnlvaiv~gi~r~~~ 900 (980)
||||+|+++|+|+||++++++|+|++++++|+||+|..+++ +++++|.|+||++++|+++++++|++|+++|++++++
T Consensus 887 Qq~w~I~~tSa~Lfavl~~iLKvLg~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~ 966 (1044)
T PLN02915 887 EQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAIN 966 (1044)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999987543 5678999999999999999999999999999999998
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHHHHHHHHHHHhheeEecCCcccCCCcccccccccccC
Q 002020 901 KGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKIDPFVEKTNSATLGQTCISIDC 980 (980)
Q Consensus 901 ~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~s~~l~~~~~~lwv~~~~~~~~~~~~~~~~~~~~~~~ 980 (980)
+++.+||++++++|+++|+++|+|||++|||||++|+||||++||++||++|+||||+|+||+++++||.+ ++| |++|
T Consensus 967 ~~~~~~g~l~~~l~~~~wvvv~lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~-~~~-~~~~ 1044 (1044)
T PLN02915 967 NGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPIL-KQC-GVEC 1044 (1044)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccc-ccc-CCCC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999998 999 9999
No 4
>PLN02195 cellulose synthase A
Probab=100.00 E-value=6.6e-286 Score=2505.68 Aligned_cols=975 Identities=87% Similarity=1.454 Sum_probs=897.0
Q ss_pred CCCCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC-CCcccccCCCCCCCCCcccc
Q 002020 1 MMQSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD-ENLLDDVGTKEPGNRSTMAA 79 (980)
Q Consensus 1 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~-e~~~dd~~~~~~~~~~~~~~ 79 (980)
||++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||+ |+|+||+|+||+.+.+.+++
T Consensus 1 ~~~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk~~~~~~d~~~~~~~~~~~~~~ 80 (977)
T PLN02195 1 MMESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYDAENVFDDVETKHSRNQSTMAS 80 (977)
T ss_pred CCcCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccccccccchhhhhhccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998 66789999999665555667
Q ss_pred cccCCCCCCcccCCccCCcccCCCCCCCCCccccchhhhHHHhhhhhhhhhccccc-cccCCCCCCCcccccCCCccCCC
Q 002020 80 QLSNSENTGIHARHISNVSTVDSEYNDESGNPIWKNRVESWKDKKNKKKKTAAKAE-KEAEVPPAQQMEENQQSPEAALP 158 (980)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p 158 (980)
++++++..+.|++.....+.++.+-..+|||++||||||+||.||+|++....++. .+++++++.+++|+++ ||.++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p 159 (977)
T PLN02195 81 HLNDTQDVGIHARHISSVSTVDSELNDEYGNPIWKNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQMEEKPS-ADAYEP 159 (977)
T ss_pred hcccCcCCCCCCccccccccCCCcccCccCCHHHHHHHHHHHHhhhhhccccccccccccCCCCccCCccccc-ccccCC
Confidence 77766654445444433344455555679999999999999999998876332221 1223333444677776 999999
Q ss_pred CceeeecCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhh
Q 002020 159 LSTLIPVPRSKLGPYRTVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLS 238 (980)
Q Consensus 159 l~~~~~~~~~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~ 238 (980)
|+||+++++++++|||++++++|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||+
T Consensus 160 L~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~ 239 (977)
T PLN02195 160 LSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLS 239 (977)
T ss_pred ceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhh
Q 002020 239 ARFEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFC 318 (980)
Q Consensus 239 ~~~~~~~~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfC 318 (980)
+|||+|+++++||+|||||+|+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|||||
T Consensus 240 ~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFC 319 (977)
T PLN02195 240 ARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFC 319 (977)
T ss_pred HHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccc
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCcc
Q 002020 319 KKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPG 398 (980)
Q Consensus 319 kk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~ 398 (980)
|||+||||+||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||++++|||+
T Consensus 320 kK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~ 399 (977)
T PLN02195 320 KKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPG 399 (977)
T ss_pred cccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh
Q 002020 399 MIQVFLGHSGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM 478 (980)
Q Consensus 399 iiqv~l~~~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff 478 (980)
||||+++++|+.|.+|++||+||||||||||||+||+||||||+++||||++||||||||||||||+|||++||+|||||
T Consensus 400 IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~ 479 (977)
T PLN02195 400 MIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFL 479 (977)
T ss_pred hhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCC
Q 002020 479 MDPQVGRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSC 558 (980)
Q Consensus 479 ~Dp~~g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~ 558 (980)
+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+.....++.++.+
T Consensus 480 ~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~ 559 (977)
T PLN02195 480 MDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSSS 559 (977)
T ss_pred cCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999998765444333322
Q ss_pred CCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCC
Q 002020 559 SWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVP 638 (980)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~ 638 (980)
+| |||+..++.+++.++..++.++.+....+.+++++++.++.+++.++++++++++||+|.+|++|++++.+|.+
T Consensus 560 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~ 635 (977)
T PLN02195 560 ---SS-CCCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDNYDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVP 635 (977)
T ss_pred ---cc-ccccccccccccchhhccccccccccccccccccccccchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCC
Confidence 23 35554433332222222222333333444556666666677888889999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHH
Q 002020 639 DSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVL 718 (980)
Q Consensus 639 ~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~ 718 (980)
...+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|+|+++.|+||+|+.+++.||+
T Consensus 636 ~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~ 715 (977)
T PLN02195 636 ESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVL 715 (977)
T ss_pred CCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHH
Q 002020 719 RWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLF 798 (980)
Q Consensus 719 RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lf 798 (980)
|||+|++||+++++||+++|+.+++|+++||++|+++++||+++++.++|+++|++||++|++++|.+++.++++|+++|
T Consensus 716 RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~~~f~~lf 795 (977)
T PLN02195 716 RWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLASMLFLGLF 795 (977)
T ss_pred HHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHHHHHHHHH
Confidence 99999999999999999987654679999999999999999999999999999999999999999999888888899999
Q ss_pred HHHHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccccccceeeeccccchh
Q 002020 799 LSIIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDLEFGELYIIKWTTLLI 878 (980)
Q Consensus 799 ls~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~i 878 (980)
+++++++++|++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|.||+|..++++++++|.|+||++++
T Consensus 796 l~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~dd~~~~~~Y~f~~S~l~i 875 (977)
T PLN02195 796 ISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAADDTEFGELYMVKWTTLLI 875 (977)
T ss_pred HHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceeccccccccchhcceeccceehhH
Confidence 99999999999999999999999999999999999999999999999999999999999998887889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHHHHHHHHHHHhheeE
Q 002020 879 PPTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVK 958 (980)
Q Consensus 879 P~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~s~~l~~~~~~lwv~ 958 (980)
|+++++++|++|+++|+++++++++++||++++++|+++|+++|+|||++|||||++|+||||++||++|+++|+||||+
T Consensus 876 P~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~ 955 (977)
T PLN02195 876 PPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVK 955 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHee
Confidence 99999999999999999999988888999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcccCCCcccccccccccC
Q 002020 959 IDPFVEKTNSATLGQTCISIDC 980 (980)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~ 980 (980)
|+||+++++||+++++|+|++|
T Consensus 956 ~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 956 INPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred ccccccCCCCCchhhccCCCCC
Confidence 9999999999994499999999
No 5
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=2.1e-286 Score=2526.33 Aligned_cols=970 Identities=67% Similarity=1.215 Sum_probs=877.0
Q ss_pred CCCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC-------------CCc-ccccC
Q 002020 2 MQSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD-------------ENL-LDDVG 67 (980)
Q Consensus 2 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~-------------e~~-~dd~~ 67 (980)
.+.++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||+ ||+ +||+|
T Consensus 13 ~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDeeed~~~dDle 92 (1079)
T PLN02638 13 KHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDGDADDGA 92 (1079)
T ss_pred cccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccccccCcchhhh
Confidence 3578999999999999999999999999999999999999999999999999999993 444 69999
Q ss_pred CCCCCCCC------c----c-cccccC-------------------------CC--CCC------cc-cC--------C-
Q 002020 68 TKEPGNRS------T----M-AAQLSN-------------------------SE--NTG------IH-AR--------H- 93 (980)
Q Consensus 68 ~~~~~~~~------~----~-~~~~~~-------------------------~~--~~~------~~-~~--------~- 93 (980)
|||++... . | ++++++ +| .+. +| +. .
T Consensus 93 ~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1079)
T PLN02638 93 SDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPGAGGKRI 172 (1079)
T ss_pred hhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccccccCccccCCcc
Confidence 99987521 0 1 122222 11 000 11 10 0
Q ss_pred --------ccCCcccCCCCC---CCCCccccchhhhHHHhhhhhhhhhcc------ccccccCCC-CCC-CcccccCCCc
Q 002020 94 --------ISNVSTVDSEYN---DESGNPIWKNRVESWKDKKNKKKKTAA------KAEKEAEVP-PAQ-QMEENQQSPE 154 (980)
Q Consensus 94 --------~~~~~~~~~~~~---~~~g~~~w~~~~~~~k~~~~~~~~~~~------~~~~~~~~~-~~~-~~~~~~~~~~ 154 (980)
..+.+.+||+|+ |||||++||||||+||.||+|++.... +|.++++++ +++ +++|++++++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1079)
T PLN02638 173 PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVLMDDALLNDE 252 (1079)
T ss_pred cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCcccccccccccccc
Confidence 133567999999 999999999999999999998765211 111112222 222 3688999999
Q ss_pred cCCCCceeeecCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchhH
Q 002020 155 AALPLSTLIPVPRSKLGPYRTVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYI 234 (980)
Q Consensus 155 ~~~pl~~~~~~~~~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~ 234 (980)
+++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+
T Consensus 253 ~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~ 332 (1079)
T PLN02638 253 ARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKWLPVNRETYL 332 (1079)
T ss_pred CCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhh
Q 002020 235 DRLSARFEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKW 314 (980)
Q Consensus 235 d~L~~~~~~~~~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~W 314 (980)
|||++|||+|+++++||+|||||+|+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+|
T Consensus 333 drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~W 412 (1079)
T PLN02638 333 DRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 412 (1079)
T ss_pred HHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCC
Q 002020 315 VPFCKKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTR 394 (980)
Q Consensus 315 vpfCkk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~ 394 (980)
|||||||+||||+||+||++|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.|+|||+|||++++
T Consensus 413 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~ 492 (1079)
T PLN02638 413 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTR 492 (1079)
T ss_pred cccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeeecCCCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHH
Q 002020 395 DHPGMIQVFLGHSGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREA 474 (980)
Q Consensus 395 dhp~iiqv~l~~~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~a 474 (980)
|||+||||++++.|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+|
T Consensus 493 dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~A 572 (1079)
T PLN02638 493 DHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 572 (1079)
T ss_pred CCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCC
Q 002020 475 MCFMMDPQVGRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKT 554 (980)
Q Consensus 475 mcff~Dp~~g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~ 554 (980)
|||||||+.|+++|||||||+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||...+....
T Consensus 573 MCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~~p~~~~~~~~~ 652 (1079)
T PLN02638 573 MCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPIKPKHKKP 652 (1079)
T ss_pred hhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhcCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999875321111
Q ss_pred CCCCCCCCCCCCCCCCCCCCcchhh-Hh---hhhhhhhHHHHhhhhhhcccc-----chhhHhHhhhhhhhhhccCchHH
Q 002020 555 SSSCSWCGCCSCCCPSKKPSKDLSE-AY---RDAKREELDAAIFNLKEIDNY-----DDYERSMLISQMSFEKTFGLSSV 625 (980)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~fG~s~~ 625 (980)
..+|+||+..+++.++... .. ...++.....+++++++++++ .+.+++++++++.++++||+|.+
T Consensus 653 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~ 726 (1079)
T PLN02638 653 ------GFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAV 726 (1079)
T ss_pred ------ccccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhccccHH
Confidence 1122356543433222211 11 001122223344445554433 22366778899999999999999
Q ss_pred HHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecc
Q 002020 626 FIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGS 705 (980)
Q Consensus 626 ~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~ 705 (980)
|++|++++.+|.+.+.+++++++||++|+||+||++|+||+||||+|+|+|||+.||++||++||||+|++|+++++.|+
T Consensus 727 fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~Gl 806 (1079)
T PLN02638 727 FVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGS 806 (1079)
T ss_pred HHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhcCc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999998877889999
Q ss_pred cCCCHHHHHHHHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccc
Q 002020 706 APINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPT 785 (980)
Q Consensus 706 aP~tl~~~l~QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~ 785 (980)
||+|+.+++.||+|||+|++||++++++|+++|+ +++|+++||++|+++++||+++++.++|+++|++||++|++++|.
T Consensus 807 AP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~-~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~G~~i~P~ 885 (1079)
T PLN02638 807 APINLSDRLNQVLRWALGSVEILFSRHCPIWYGY-GGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLTGKFIIPQ 885 (1079)
T ss_pred CCCCHHHHHHHHHHHhhcchheeeccCCcccccc-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCC
Confidence 9999999999999999999999999999999765 356999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccc-c
Q 002020 786 LSNLASVLFLGLFLSIIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDL-E 864 (980)
Q Consensus 786 ~s~~~~~~fl~lfls~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~-~ 864 (980)
+++.++++|+++|++++++++||++|+|+++++||||||||+|+++|+|+||++++++|+|++++++|.||+|..+++ +
T Consensus 886 vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK~~d~~~~ 965 (1079)
T PLN02638 886 ISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGD 965 (1079)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceecccccccccc
Confidence 888888889999999999999999999999999999999999999999999999999999999999999999987543 5
Q ss_pred ccceeeeccccchhHHHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHH
Q 002020 865 FGELYIIKWTTLLIPPTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLW 944 (980)
Q Consensus 865 ~~~ly~f~ws~l~iP~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~ 944 (980)
++++|+|+||++|+|+++|+++|++|+++|+++++++++++|+++++++|+++|+++|+|||++|||||++|+||||++|
T Consensus 966 ~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~P~~v~v~ 1045 (1079)
T PLN02638 966 FAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVW 1045 (1079)
T ss_pred ccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHH
Confidence 78999999999999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhheeEecCCcccCCCcccccccccccC
Q 002020 945 SVLLASVFSLVWVKIDPFVEKTNSATLGQTCISIDC 980 (980)
Q Consensus 945 s~~l~~~~~~lwv~~~~~~~~~~~~~~~~~~~~~~~ 980 (980)
|++|+++|+||||+|+||+++++||.+ ++| |++|
T Consensus 1046 s~ll~~~~~l~~v~~~~~~~~~~~~~~-~~~-~~~~ 1079 (1079)
T PLN02638 1046 SILLASIFSLLWVRIDPFTTRVTGPDV-EQC-GINC 1079 (1079)
T ss_pred HHHHHHHHHHHHheecccccCCCCchh-hcc-CcCC
Confidence 999999999999999999999999998 999 9999
No 6
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.9e-275 Score=2425.96 Aligned_cols=942 Identities=68% Similarity=1.241 Sum_probs=858.1
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC-------------CCcccccCCC
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD-------------ENLLDDVGTK 69 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~-------------e~~~dd~~~~ 69 (980)
+.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+||||||||+ |+|+||+|+|
T Consensus 31 ~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e 110 (1040)
T PLN02189 31 NLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHE 110 (1040)
T ss_pred cccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCccccccchhhhhh
Confidence 467899999999999999999999999999999999999999999999999999993 6678999999
Q ss_pred CCCCCC-----c----c-cccccCCCC----------------------C--C------cc-c-------CCc-------
Q 002020 70 EPGNRS-----T----M-AAQLSNSEN----------------------T--G------IH-A-------RHI------- 94 (980)
Q Consensus 70 ~~~~~~-----~----~-~~~~~~~~~----------------------~--~------~~-~-------~~~------- 94 (980)
|++... . | ++++++++. + . +| + +.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (1040)
T PLN02189 111 FNIDDEQDKNKHITEAMLHGKMSYGRGPDDDENNQFPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSSLHKRVHPYPVSE 190 (1040)
T ss_pred ccccccccchhHHHHHHhhhhcccCCCcccCCCcCCCcccccCccccccCCcCccccccccccccCCcccCccCcccccC
Confidence 986421 0 1 122221110 0 0 11 1 111
Q ss_pred cCCcccCCCCCCCCCccccchhhhHHHhhhhhhhhhccccccccCCCCCCCcccccCCCccCCCCceeeecCCCCCcchh
Q 002020 95 SNVSTVDSEYNDESGNPIWKNRVESWKDKKNKKKKTAAKAEKEAEVPPAQQMEENQQSPEAALPLSTLIPVPRSKLGPYR 174 (980)
Q Consensus 95 ~~~~~~~~~~~~~~g~~~w~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~R 174 (980)
.+.+.+||+|+.+ ||||||+||+||++ .+ + +++++++|+++++++++||+||+++++++++|||
T Consensus 191 ~~~~~~~~~~~~~-----wk~rv~~wk~~~~~-------~~--~--~~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR 254 (1040)
T PLN02189 191 PGSAKWDEKKEGG-----WKERMDDWKMQQGN-------LG--P--DPDDYDADMALIDEARQPLSRKVPIASSKVNPYR 254 (1040)
T ss_pred CCcccCCcccccc-----HHHHHHHHHhhccc-------CC--C--CCCCCchhhhhcccCCCCceEEEecCccccchHH
Confidence 2345688888855 99999999999961 11 0 1233467778889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhhhhhccCCCCCCCceeE
Q 002020 175 TVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLSARFEREGEPSELAAVD 254 (980)
Q Consensus 175 ~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~~~~~~~~~~~~lp~VD 254 (980)
++++++|+++++||+||++|++++++|+|+++++||+||+|+|+|+|++||+||+|+||+|||++|||+|+++++||+||
T Consensus 255 ~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vD 334 (1040)
T PLN02189 255 MVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVD 334 (1040)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccccccc
Q 002020 255 FFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEFYFSQ 334 (980)
Q Consensus 255 vfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~YF~~ 334 (980)
|||+|+||.||||++|+||||||||+|||+|||+|||||||+|+||||||.|||+|||+||||||||+||||+||+||++
T Consensus 335 vFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~ 414 (1040)
T PLN02189 335 IFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSL 414 (1040)
T ss_pred eEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCCCcC
Q 002020 335 KIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGACDIEG 414 (980)
Q Consensus 335 ~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~d~~g 414 (980)
|.|+++++.+|+|++|||+|||||||||+|||+++++++++|+++|.|+||++|||++++|||+||||++++.|+.|.+|
T Consensus 415 ~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g 494 (1040)
T PLN02189 415 KVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEG 494 (1040)
T ss_pred CCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred CCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCc
Q 002020 415 NELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQ 494 (980)
Q Consensus 415 ~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ 494 (980)
++||+||||||||||||+||+||||||+|+||||++||||||||||||||+|||++||+||||||||+.|+++|||||||
T Consensus 495 ~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQ 574 (1040)
T PLN02189 495 NELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQ 574 (1040)
T ss_pred cccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 495 RFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPS 574 (980)
Q Consensus 495 ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (980)
+|+|+|++|||+||+++|||++|+|+||+|||+||||||+|||+||||++|+.....+...+ .+|+||. .++++
T Consensus 575 rF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~-----~~~~~~~-~~~~~ 648 (1040)
T PLN02189 575 RFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVT-----CDCCPCF-GRRKK 648 (1040)
T ss_pred ccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeeeeccCcccccccccccc-----cchhhhc-ccccc
Confidence 99999999999999999999999999999999999999999999999999886544333322 1232333 33222
Q ss_pred cchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhc
Q 002020 575 KDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVI 654 (980)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~ 654 (980)
++.+..... +...++ +.+.+++.++++++++++||+|.+|++|+..+.+|.+.....+++++||++|+
T Consensus 649 ~~~~~~~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~ 716 (1040)
T PLN02189 649 KHAKNGLNG-----------EVAALG-GMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVI 716 (1040)
T ss_pred ccccccccc-----------cccccc-ccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhh
Confidence 211111000 001111 12224445677899999999999999999999999888888899999999999
Q ss_pred ccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhHHHHHhhcCc
Q 002020 655 SCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCP 734 (980)
Q Consensus 655 sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQil~sk~~P 734 (980)
||+||++|+||+||||.|+|+|||+.||++||++||||+|++|+++++.|+||+|+.+++.||+||++|++||+++++||
T Consensus 717 sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nP 796 (1040)
T PLN02189 717 SCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSP 796 (1040)
T ss_pred ccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHhhhccCc
Q 002020 735 LWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLSIIATSVLELRWSGV 814 (980)
Q Consensus 735 l~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lfls~~~~~lLe~~w~G~ 814 (980)
+++|+.+++|+++||++|+++++||+++++.++|+++|++||++|++|+|.++++++++|+++|++++++.++|++|+|+
T Consensus 797 l~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll~g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~ 876 (1040)
T PLN02189 797 LLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLLTGKFIMPPISTFASLFFIALFMSIFATGILELRWSGV 876 (1040)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99766446699999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccccccceeeeccccchhHHHHHHHHHHHHHHHH
Q 002020 815 TIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDLEFGELYIIKWTTLLIPPTSLIIVNMVGVVAG 894 (980)
Q Consensus 815 s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~~Llllnlvaiv~g 894 (980)
++++||||||||+|+++|+|+||++++++|+|++++++|.||+|..++++++++|.|+||++++|+++++++|++|+++|
T Consensus 877 s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~~F~VTsK~~~d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g 956 (1040)
T PLN02189 877 SIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSKATDDDEFGELYAFKWTTLLIPPTTLLIINIVGVVAG 956 (1040)
T ss_pred cHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcccceeccccccccccccceeecceeHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888889999999999999999999999999999
Q ss_pred HHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHHHHHHHHHHHhheeEecCCcccCCCcccccc
Q 002020 895 FSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKIDPFVEKTNSATLGQT 974 (980)
Q Consensus 895 i~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~s~~l~~~~~~lwv~~~~~~~~~~~~~~~~~ 974 (980)
+++++++++++|+++++++|+++|+++|+|||++|||||++|+||||++||++|+++|+||||+|+||+++++||.+ ++
T Consensus 957 ~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~-~~ 1035 (1040)
T PLN02189 957 ISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDV-KQ 1035 (1040)
T ss_pred HHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHHHHHHHHheecccccCCCCchh-hc
Confidence 99999888889999999999999999999999999999999999999999999999999999999999999999998 99
Q ss_pred cccccC
Q 002020 975 CISIDC 980 (980)
Q Consensus 975 ~~~~~~ 980 (980)
| |++|
T Consensus 1036 ~-~~~~ 1040 (1040)
T PLN02189 1036 C-GINC 1040 (1040)
T ss_pred c-CcCC
Confidence 9 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=1.4e-248 Score=2196.34 Aligned_cols=907 Identities=51% Similarity=0.935 Sum_probs=799.7
Q ss_pred CCCCCCCcccc--cCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcccccCCCCCCC-CCcc
Q 002020 1 MMQSGAPVCNT--CGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLLDDVGTKEPGN-RSTM 77 (980)
Q Consensus 1 ~~~~~~~~C~i--Cgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~dd~~~~~~~~-~~~~ 77 (980)
|.+++++.|.+ |+.+++.||+|++..+| ||+|+|||+||.++.++| +.|||||++|+.+|+||+.++++.. .+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (1135)
T PLN02248 119 MAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVTDLDDEVPDESSGALPLP 196 (1135)
T ss_pred cCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccccccccccccccccccCC
Confidence 44678899998 99999999999999999 999999999999999996 8999999999988887777554432 2211
Q ss_pred -c--------cc-------ccCCCCC-CcccCCccCCcccCCCCCCCCCccccchhhhHHHhhhhhhhhhccccccccCC
Q 002020 78 -A--------AQ-------LSNSENT-GIHARHISNVSTVDSEYNDESGNPIWKNRVESWKDKKNKKKKTAAKAEKEAEV 140 (980)
Q Consensus 78 -~--------~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~~k~~~~~~~~~~~~~~~~~~~ 140 (980)
+ .+ +..+|.+ ++|++|++ +++++|||||+.|+++.. .|+++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~-----~~~~~~~~~~~~~~~~~~--------------~~~~~~~- 256 (1135)
T PLN02248 197 PPGGSKMDRRLSLMKSNSLLMRSQTGDFDHNRWLF-----ETKGTYGYGNAVWPKDDG--------------YGDDGGG- 256 (1135)
T ss_pred CCCCcccccccccccccchhccCCCCCCCCceeee-----ecccccccccccCccccc--------------cCCCCCc-
Confidence 1 01 2235655 79999999 999999999999998642 1211111
Q ss_pred CCCCCcccccCCCccCCCCceeeecCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHh
Q 002020 141 PPAQQMEENQQSPEAALPLSTLIPVPRSKLGPYRTVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEIWFAFSWVLD 220 (980)
Q Consensus 141 ~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~~f~~~wil~ 220 (980)
.... .++|++++||+||+++++++++|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+
T Consensus 257 ---~~~~--~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~ 331 (1135)
T PLN02248 257 ---GGPG--EFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLD 331 (1135)
T ss_pred ---cccc--cccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 0111 46899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccchhHhHhhhhhccCC-----CCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCC
Q 002020 221 QFPKWSPVDRETYIDRLSARFEREG-----EPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDG 295 (980)
Q Consensus 221 ~~~kw~pv~r~~~~d~L~~~~~~~~-----~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg 295 (980)
|++||+||+|.||+|||++|||+|+ ++++||+|||||+|+||.||||++|+||||||||+|||+|||+|||||||
T Consensus 332 q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDG 411 (1135)
T PLN02248 332 QLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDG 411 (1135)
T ss_pred ccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCC
Confidence 9999999999999999999998654 46789999999999999999999999999999999999999999999999
Q ss_pred CcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHH----
Q 002020 296 AAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAK---- 371 (980)
Q Consensus 296 ~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~---- 371 (980)
+|+||||||.|||+|||+||||||||+||||+||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++.
T Consensus 412 gS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~r 491 (1135)
T PLN02248 412 GALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRR 491 (1135)
T ss_pred chHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999741
Q ss_pred --------------------------hhcCCcccccccCCCCCCCC--------CCCCCccceeeeecCCC------C--
Q 002020 372 --------------------------AQKTPEEGWTMQDGTSWPGN--------NTRDHPGMIQVFLGHSG------A-- 409 (980)
Q Consensus 372 --------------------------~~~~p~~~w~m~dgt~w~~~--------~~~dhp~iiqv~l~~~g------~-- 409 (980)
++|+|+++| |+|||+|||+ +++|||+|||||+++.+ .
T Consensus 492 s~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~ 570 (1135)
T PLN02248 492 SDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSAD 570 (1135)
T ss_pred ccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCccc
Confidence 246789999 9999999998 46799999999998643 1
Q ss_pred ----CCC--cCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCC
Q 002020 410 ----CDI--EGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQV 483 (980)
Q Consensus 410 ----~d~--~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~ 483 (980)
.|. .+++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+
T Consensus 571 ~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~- 649 (1135)
T PLN02248 571 DENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG- 649 (1135)
T ss_pred ccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-
Confidence 122 3458999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002020 484 GRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGC 563 (980)
Q Consensus 484 g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~ 563 (980)
|+++|||||||+|+|+|++|||+||+++|||++|+|+||+|||+||||||+|||+||||++|+..+..++ +|
T Consensus 650 g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~--------~~ 721 (1135)
T PLN02248 650 GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSG--------CF 721 (1135)
T ss_pred CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCcccccccc--------cc
Confidence 9999999999999999999999999999999999999999999999999999999999999987643221 12
Q ss_pred CCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHh-cCCCCC---
Q 002020 564 CSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLME-NGGVPD--- 639 (980)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e-~GG~~~--- 639 (980)
|+||+ .++++++.+... . ...+++++.++ ++.+.++++||+|..|++|+..+ .+|.+.
T Consensus 722 ~~~~~-~~~~~~~~~~~~----~-------~~~~~~~~~~~------~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~ 783 (1135)
T PLN02248 722 GSCKF-TKKKKKETSASE----P-------EEQPDLEDDDD------LELSLLPKRFGNSTMFAASIPVAEFQGRPLADH 783 (1135)
T ss_pred ccccc-cccccccccccc----c-------cccccccccch------hhhhhhhhhhccchhhhhhhHHHhhcccccccc
Confidence 33443 222222111000 0 00112221111 23456889999999999999643 232221
Q ss_pred ----------------CCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCcee
Q 002020 640 ----------------SANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFK 703 (980)
Q Consensus 640 ----------------~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~ 703 (980)
....+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|+++++.
T Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~ 863 (1135)
T PLN02248 784 PSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFR 863 (1135)
T ss_pred cccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhc
Confidence 1123689999999999999999999999999999999999999999999999999987788999
Q ss_pred cccCCCHHHHHHHHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccc
Q 002020 704 GSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFII 783 (980)
Q Consensus 704 G~aP~tl~~~l~QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~ii 783 (980)
|+||+|+.++++||+||++|++||++++++|+++ .++|+++|||+|+++++||+++++.++|+++|++||++|++++
T Consensus 864 GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~---~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~ 940 (1135)
T PLN02248 864 GTAPINLTDRLHQVLRWATGSVEIFFSRNNALLA---SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIV 940 (1135)
T ss_pred CCCCCCHHHHHHHHHHHhhchHHHHhccCCcccc---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 9999999999999999999999999999999884 3469999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccc
Q 002020 784 PTLSNLASVLFLGLFLSIIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDL 863 (980)
Q Consensus 784 P~~s~~~~~~fl~lfls~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~ 863 (980)
|+.+..++++++.+++++++++++|++|+|+++++||||||||+|.+++++++|++++++|+|++++++|.||+|..+++
T Consensus 941 p~~~~~fl~yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d 1020 (1135)
T PLN02248 941 QTLNVTFLVYLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDD 1020 (1135)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccc
Confidence 98765555455566788899999999999999999999999999999999999999999999999999999999987543
Q ss_pred ---cccceeeeccccchhHHHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceee
Q 002020 864 ---EFGELYIIKWTTLLIPPTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTI 940 (980)
Q Consensus 864 ---~~~~ly~f~ws~l~iP~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~ 940 (980)
+++++|.|+|+++++|+++++++|++|+++|++|++.++++.|+.+++++|+++|+++|+|||++|||||++|+|||
T Consensus 1021 ~~~~~a~ly~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~i 1100 (1135)
T PLN02248 1021 EDDEFADLYIVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTI 1100 (1135)
T ss_pred cccccchheecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCee
Confidence 46789999999999999999999999999999999987777889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhheeEecCCccc
Q 002020 941 VVLWSVLLASVFSLVWVKIDPFVEK 965 (980)
Q Consensus 941 v~~~s~~l~~~~~~lwv~~~~~~~~ 965 (980)
|++||++++++++||||+|+||...
T Consensus 1101 v~v~s~ll~~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1101 VYVWSGLLSITISLLWVAISPPSGA 1125 (1135)
T ss_pred hHHHHHHHHHHHHHHheEeccccCc
Confidence 9999999999999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=2.3e-215 Score=1865.48 Aligned_cols=713 Identities=68% Similarity=1.237 Sum_probs=676.0
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccccc
Q 002020 253 VDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEFYF 332 (980)
Q Consensus 253 VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~YF 332 (980)
|||||+|+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.||++|||+||||||||+||||+||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCCC
Q 002020 333 SQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGACDI 412 (980)
Q Consensus 333 ~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~d~ 412 (980)
++|.|+++++.+|+|++||++|||||||||+|||+++++.+++|+++|.|+|||+|||++++|||+||||+++++++.|.
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEcc
Q 002020 413 EGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQF 492 (980)
Q Consensus 413 ~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~ 492 (980)
+|++||+||||||||||||+||+||||||+|+||||++||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 493 PQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKK 572 (980)
Q Consensus 493 PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (980)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++|+...+..+.++ +||+||++.+|
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~-----~~~~~c~~~~k 315 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC-----CCCSCCFGRRK 315 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce-----eeeecccCCcc
Confidence 9999999999999999999999999999999999999999999999999999998776655443 23444443444
Q ss_pred CCcchh-hHhhhhhhhhHHHHhhhhhhcccc---chhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHH
Q 002020 573 PSKDLS-EAYRDAKREELDAAIFNLKEIDNY---DDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIK 648 (980)
Q Consensus 573 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ 648 (980)
++++.+ ++.+..++.+...+.+++++++++ .+.+++..+++++++++||+|.+|++|+.++.|+.+.+.+++++|+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~ 395 (720)
T PF03552_consen 316 KKKSKKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLE 395 (720)
T ss_pred cccccccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 443332 222333445556677888888864 4667888899999999999999999999999999999999999999
Q ss_pred HHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhHHHH
Q 002020 649 EAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIF 728 (980)
Q Consensus 649 ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQil 728 (980)
||+||+||+||++|+|||||||.|+++|||+.||++||++||||+||+|+|++|.|.||+|+.+.+.|++||+.|++||+
T Consensus 396 EA~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~ 475 (720)
T PF03552_consen 396 EAIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIF 475 (720)
T ss_pred HHHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHh
Q 002020 729 LSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLSIIATSVLE 808 (980)
Q Consensus 729 ~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lfls~~~~~lLe 808 (980)
++||||+|+++ .++|+++||++|++.++||++|+|.++|+++|++||++|++++|++++.++++|+++|+++++++++|
T Consensus 476 fSr~~Pl~~g~-~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE 554 (720)
T PF03552_consen 476 FSRHCPLWYGY-GGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLE 554 (720)
T ss_pred hhcCCchhccC-CCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999875 36799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcc--cccccceeeeccccchhHHHHHHHH
Q 002020 809 LRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAAD--DLEFGELYIIKWTTLLIPPTSLIIV 886 (980)
Q Consensus 809 ~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~--~~~~~~ly~f~ws~l~iP~~~Llll 886 (980)
++|+|+++++||||||||+|.++++|+||++++++|+|++++++|.||+|..+ ++++.++|.|+|+++++|+++|+++
T Consensus 555 ~~wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllil 634 (720)
T PF03552_consen 555 FRWSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLIL 634 (720)
T ss_pred HHhccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999876 4557789999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHHHHHHHHHHHhheeEecCCcccC
Q 002020 887 NMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKIDPFVEKT 966 (980)
Q Consensus 887 nlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~s~~l~~~~~~lwv~~~~~~~~~ 966 (980)
|++|+++|+++.+++++++|+++++++|+++|+++|+|||++|||||++|+||||++||++||++|+||||+||||++|+
T Consensus 635 NLva~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~ 714 (720)
T PF03552_consen 635 NLVAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKT 714 (720)
T ss_pred HHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCC
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccc
Q 002020 967 NSATL 971 (980)
Q Consensus 967 ~~~~~ 971 (980)
+||++
T Consensus 715 ~~~~~ 719 (720)
T PF03552_consen 715 TGPDL 719 (720)
T ss_pred CCCCC
Confidence 99987
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=9.1e-200 Score=1737.18 Aligned_cols=726 Identities=34% Similarity=0.608 Sum_probs=654.9
Q ss_pred ccCCCCceeeecCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHhhcccccccccchh
Q 002020 154 EAALPLSTLIPVPRSKLGPYRTVIIVRLIILGLFFHYRVTHPVDSALGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETY 233 (980)
Q Consensus 154 ~~~~pl~~~~~~~~~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~ 233 (980)
....||++++++++++ ||++.+++++++++||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|+
T Consensus 6 ~~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~ 81 (756)
T PLN02190 6 SSLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPY 81 (756)
T ss_pred CCCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCC
Confidence 4568999999998876 899999999999999999999999887 689999999999999999999999999999999
Q ss_pred HhHhhhhhccCCCCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhh
Q 002020 234 IDRLSARFEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARK 313 (980)
Q Consensus 234 ~d~L~~~~~~~~~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~ 313 (980)
+|||++|++ +||+|||||+||||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+
T Consensus 82 p~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~ 155 (756)
T PLN02190 82 PDRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKI 155 (756)
T ss_pred cHHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhh
Confidence 999999983 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCC--CCCCCC
Q 002020 314 WVPFCKKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDG--TSWPGN 391 (980)
Q Consensus 314 WvpfCkk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dg--t~w~~~ 391 (980)
||||||||+||||+||+||+++.+ ++.+++|++||++||+||||||+||++.+ +...|.+.|+ .+|+++
T Consensus 156 WvPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~ 226 (756)
T PLN02190 156 WVPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNT 226 (756)
T ss_pred hcccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCC
Confidence 999999999999999999998543 33558999999999999999999999863 3467777666 789999
Q ss_pred CCCCCccceeeeecCCCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHH
Q 002020 392 NTRDHPGMIQVFLGHSGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAV 471 (980)
Q Consensus 392 ~~~dhp~iiqv~l~~~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~L 471 (980)
+++|||+||||+++++|+ +.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++
T Consensus 227 ~~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~ 305 (756)
T PLN02190 227 KPNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVV 305 (756)
T ss_pred CCCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHH
Confidence 999999999999999765 4468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCC-CCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCC
Q 002020 472 REAMCFMMDPQV-GRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPT 550 (980)
Q Consensus 472 r~amcff~Dp~~-g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~ 550 (980)
|+||||||||+. ++++|||||||+|+ |+|+||+++|||++|+|+||+|||+|+||||+|||+||||++||...+
T Consensus 306 r~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~ 380 (756)
T PLN02190 306 RQAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLED 380 (756)
T ss_pred HHhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCcccccc
Confidence 999999999874 46899999999998 789999999999999999999999999999999999999999876433
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHH
Q 002020 551 LPKTSSSCSWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIEST 630 (980)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sa 630 (980)
..+... . .+++ ..++++++++||+|..|++|+
T Consensus 381 ~~~~~~-------------~----------------------------------~~~~-~~~~~~~~~~fg~s~~f~~s~ 412 (756)
T PLN02190 381 DGSLSS-------------V----------------------------------ATRE-FLAEDSLAREFGNSKEMVKSV 412 (756)
T ss_pred cccccc-------------c----------------------------------cccc-ccchhhhhhhcCCcHHHHHHH
Confidence 111000 0 0001 123455778999999999999
Q ss_pred HHhcCCCCC-CCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCC
Q 002020 631 LMENGGVPD-SANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPIN 709 (980)
Q Consensus 631 l~e~GG~~~-~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~t 709 (980)
..+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++|||++||+|+++++.|.+|++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~ 492 (756)
T PLN02190 413 VDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPG 492 (756)
T ss_pred HHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCC
Confidence 876544332 3345789999999999999999999999999999999999999999999999999998889999999999
Q ss_pred HHHHHHHHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchH
Q 002020 710 LSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNL 789 (980)
Q Consensus 710 l~~~l~QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~ 789 (980)
+.+.+.||+||++|++||+++++||+++++. ++|+++||++|++.++ |++++++++|+++|++||++|++++|.. .
T Consensus 493 l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~-~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~--~ 568 (756)
T PLN02190 493 GPEAMVQQRRWATGLIEVLFNKQSPLIGMFC-RKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG--V 568 (756)
T ss_pred hHHHhhhhhhHhhhhHHHHHhcCCCceeccC-CCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--c
Confidence 9999999999999999999999999996543 5699999999999988 9999999999999999999999999975 4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcc--------
Q 002020 790 ASVLFLGLFLSIIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAAD-------- 861 (980)
Q Consensus 790 ~~~~fl~lfls~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~-------- 861 (980)
++.+++.+++++++++++|++|+|+++++||||||||+|.++|+|++|++++++|+|++++++|+||+|..+
T Consensus 569 ~~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~~ 648 (756)
T PLN02190 569 YLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSGS 648 (756)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeecccccccccccc
Confidence 556677888889999999999999999999999999999999999999999999999999999999999643
Q ss_pred -----c--ccc--cceeeeccccchhHHHHHHHHHHHHHHHHHHHhhhc---CccccchhHHHHHHHHHHHHHHHHHHHH
Q 002020 862 -----D--LEF--GELYIIKWTTLLIPPTSLIIVNMVGVVAGFSDALNK---GYEAWGPLFGKVFFAFWVIVHLYPFLKG 929 (980)
Q Consensus 862 -----~--~~~--~~ly~f~ws~l~iP~~~Llllnlvaiv~gi~r~~~~---~~~~~~~~~g~l~~~~Wvv~~l~Pfl~g 929 (980)
+ +++ .++|+|+||++++|+++++++|++|++.|+++.+.. ..+.|+ .++++++++|+++|++||++|
T Consensus 649 ~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~-~l~q~~~~~~vv~~~~P~~~g 727 (756)
T PLN02190 649 GPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGS-GLAEACGCILVVMLFLPFLKG 727 (756)
T ss_pred ccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccc-cHHHHHHHHHHHHHHHHHHHH
Confidence 1 112 478999999999999999999999999988876532 222344 459999999999999999999
Q ss_pred HhcCCC-CceeehHHHHHHHHHHHHhhee
Q 002020 930 LMGRQN-RTPTIVVLWSVLLASVFSLVWV 957 (980)
Q Consensus 930 L~gR~~-~~p~~v~~~s~~l~~~~~~lwv 957 (980)
||+|++ |+|++++++|++|+.+|+.+.|
T Consensus 728 l~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 728 LFEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred HhcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 997764 9999999999999999998865
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=1.2e-190 Score=1669.10 Aligned_cols=707 Identities=37% Similarity=0.677 Sum_probs=649.3
Q ss_pred CccCCCCceeeecCCCCCcchhHHHHHHHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 002020 153 PEAALPLSTLIPVPRSKLGPYRTVIIVRLIILGLFFHYRVTHPVDSA-LGLWLTSVICEIWFAFSWVLDQFPKWSPVDRE 231 (980)
Q Consensus 153 ~~~~~pl~~~~~~~~~~~~~~R~~~~~~l~~l~~~l~~R~~~~~~~~-~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~ 231 (980)
....+||+++++++++. +||+++++++++++++|+||+++...+. .|+|+++++||+||+|+|+|+|++||+||+|+
T Consensus 8 ~~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~ 85 (734)
T PLN02893 8 STGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRR 85 (734)
T ss_pred CCCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCccccccccc
Confidence 45778999999998865 5999999999999999999999976655 78999999999999999999999999999999
Q ss_pred hhHhHhhhhhccCCCCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhh
Q 002020 232 TYIDRLSARFEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFA 311 (980)
Q Consensus 232 ~~~d~L~~~~~~~~~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa 311 (980)
||+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+||
T Consensus 86 ~~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA 161 (734)
T PLN02893 86 VFIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFA 161 (734)
T ss_pred cCHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHH
Confidence 99999997664 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCC-----C
Q 002020 312 RKWVPFCKKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDG-----T 386 (980)
Q Consensus 312 ~~WvpfCkk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dg-----t 386 (980)
|+||||||||+||||+||+||+++. ++|++||++||+||||||+|||+++++ +++|++ |.+.++ +
T Consensus 162 ~~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~ 231 (734)
T PLN02893 162 THWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFS 231 (734)
T ss_pred HhhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhcccccccc
Confidence 9999999999999999999999983 578899999999999999999999977 888877 544433 7
Q ss_pred CCCCC-CCCCCccceeeeecCCCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCC
Q 002020 387 SWPGN-NTRDHPGMIQVFLGHSGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYV 465 (980)
Q Consensus 387 ~w~~~-~~~dhp~iiqv~l~~~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i 465 (980)
.|+++ +++|||+||||++++.++.|.+|+++|+||||||||||||+||+||||||+++||||++||||||||||||||+
T Consensus 232 ~w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~ 311 (734)
T PLN02893 232 RWTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYS 311 (734)
T ss_pred cCcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCC
Confidence 89876 68899999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHhhhcCCCCCCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCC
Q 002020 466 NNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGP 545 (980)
Q Consensus 466 ~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p 545 (980)
|||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+
T Consensus 312 n~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~ 391 (734)
T PLN02893 312 NDPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPS 391 (734)
T ss_pred CchhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHH
Q 002020 546 PTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSV 625 (980)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~ 625 (980)
.... +++++ ++
T Consensus 392 ~~~~-----------------------------------------------~~~~~------------------~~---- 402 (734)
T PLN02893 392 SLIL-----------------------------------------------PEIPE------------------LN---- 402 (734)
T ss_pred cccc-----------------------------------------------hhhhh------------------cc----
Confidence 1000 00000 00
Q ss_pred HHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecc
Q 002020 626 FIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGS 705 (980)
Q Consensus 626 ~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~ 705 (980)
..++...+....++++||++|+||.||++|+||++|||.|+|+|||+.||++||++|||++|++|+++++.|+
T Consensus 403 -------~~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~G~ 475 (734)
T PLN02893 403 -------PDHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFLGD 475 (734)
T ss_pred -------cccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhccC
Confidence 0112234455678999999999999999999999999999999999999999999999999998877889999
Q ss_pred cCCCHHHHHHHHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccc
Q 002020 706 APINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPT 785 (980)
Q Consensus 706 aP~tl~~~l~QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~ 785 (980)
+|+|+.++++||+||+.|++|++++++||+++|. ++|++.||++|++.++||++++++++|+++|++||++|++++|.
T Consensus 476 aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~--~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p~ 553 (734)
T PLN02893 476 SPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV--KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFPK 553 (734)
T ss_pred CCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc--cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCccccc
Confidence 9999999999999999999999999999998654 45999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCccccc-
Q 002020 786 LSNLASVLFLGLFLSIIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDLE- 864 (980)
Q Consensus 786 ~s~~~~~~fl~lfls~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~~- 864 (980)
++..++++++.+++++++++++|++|+|.++++|||+||+|+|.++++++++++++++|.|++++.+|+||+|+.++++
T Consensus 554 ~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~~ 633 (734)
T PLN02893 554 ASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQS 633 (734)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCcccccc
Confidence 8888888888888999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred --c-cceeeecc-ccchhHHHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHhcCCC--Cce
Q 002020 865 --F-GELYIIKW-TTLLIPPTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLMGRQN--RTP 938 (980)
Q Consensus 865 --~-~~ly~f~w-s~l~iP~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~--~~p 938 (980)
+ .++|.|+| +++++|+++++++|++|+++|+++++.++ .|+.+++++++++|++++++||++||++|++ |+|
T Consensus 634 ~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~~--~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~P 711 (734)
T PLN02893 634 KRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQR--NLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKLP 711 (734)
T ss_pred cccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhCC--chhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 2 37889995 99999999999999999999999988653 4778899999999999999999999999986 999
Q ss_pred eehHHHHHHHHHHHHhh
Q 002020 939 TIVVLWSVLLASVFSLV 955 (980)
Q Consensus 939 ~~v~~~s~~l~~~~~~l 955 (980)
++|++||++||.++.++
T Consensus 712 ~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 712 VKITLISIVLAWALYLA 728 (734)
T ss_pred ccHHHHHHHHHHHHHHH
Confidence 99999999999877654
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=1.5e-65 Score=622.76 Aligned_cols=491 Identities=26% Similarity=0.381 Sum_probs=385.8
Q ss_pred hHHH-HHHHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhhhhhccCCCCC
Q 002020 174 RTVI-IVRLIILGLFFHYRVTHPVDSA----LGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLSARFEREGEPS 248 (980)
Q Consensus 174 R~~~-~~~l~~l~~~l~~R~~~~~~~~----~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~~~~~~~~~~~ 248 (980)
|+++ ++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|...+ .|..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~--------~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVP--------LPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccC--------CCCCcc
Confidence 6654 4556667999999999987643 22457789999999999888888888888775421 233457
Q ss_pred CCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCc
Q 002020 249 ELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAP 328 (980)
Q Consensus 249 ~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~P 328 (980)
.+|+|||+||||| |++.++.+|+.+++++|||.+++.+||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 7999999999999 9999999999999999999999999999999987332211110
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCC
Q 002020 329 EFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSG 408 (980)
Q Consensus 329 e~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g 408 (980)
+.|. ++..++ +.+++++.
T Consensus 185 -------------------~~~~---~~~~~~----~~~l~~~~------------------------------------ 202 (713)
T TIGR03030 185 -------------------QAEA---AQRREE----LKEFCRKL------------------------------------ 202 (713)
T ss_pred -------------------hhhh---hhhHHH----HHHHHHHc------------------------------------
Confidence 0000 000111 12232110
Q ss_pred CCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCce
Q 002020 409 ACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRDV 487 (980)
Q Consensus 409 ~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~v 487 (980)
.+.|+.|++ ++|+||||||++++. ++||||+++||||+ ++|++|++++++| .||+ +
T Consensus 203 ----------~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp~----v 259 (713)
T TIGR03030 203 ----------GVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDPK----L 259 (713)
T ss_pred ----------CcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCCC----E
Confidence 178999988 788999999999984 78999999999995 6899999999988 5886 9
Q ss_pred EEEccCccccCCCcc-------chhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCC
Q 002020 488 CYVQFPQRFDGIDKS-------DRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSW 560 (980)
Q Consensus 488 ~~VQ~PQ~F~n~d~~-------dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~ 560 (980)
++||+||.|+|.|+. +++.+++..||+.+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998753 34567888999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCC
Q 002020 561 CGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDS 640 (980)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~ 640 (980)
+++||++.
T Consensus 320 -----------------------------------------------------------------------~~iGGf~~- 327 (713)
T TIGR03030 320 -----------------------------------------------------------------------DEIGGIAG- 327 (713)
T ss_pred -----------------------------------------------------------------------HHcCCCCC-
Confidence 35788754
Q ss_pred CCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHh
Q 002020 641 ANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRW 720 (980)
Q Consensus 641 ~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RW 720 (980)
++++||++++++|+++||+++|+++ +.++|++|+|++++++||.||
T Consensus 328 --------------------------------~~vtED~~l~~rL~~~G~~~~y~~~--~~~~g~~p~sl~~~~~Qr~RW 373 (713)
T TIGR03030 328 --------------------------------ETVTEDAETALKLHRRGWNSAYLDR--PLIAGLAPETLSGHIGQRIRW 373 (713)
T ss_pred --------------------------------CCcCcHHHHHHHHHHcCCeEEEecc--ccccccCCCCHHHHHHHHHHH
Confidence 6899999999999999999999964 688999999999999999999
Q ss_pred hchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHH
Q 002020 721 ALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLS 800 (980)
Q Consensus 721 a~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lfls 800 (980)
++|++|+++. .+|++ ++ ++++.||++|++.++||+.+++.++|+++|++++++|+.+++... ..++.++++
T Consensus 374 a~G~~qi~~~-~~pl~---~~-gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~----~~~~~~~lp 444 (713)
T TIGR03030 374 AQGMMQIFRL-DNPLL---KR-GLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASA----LEILAYALP 444 (713)
T ss_pred hcChHHHHhh-hCccc---cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCH----HHHHHHHHH
Confidence 9999999975 48986 33 499999999999999999999999999999999999998887532 122334456
Q ss_pred HHHHHHHhhh-ccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccccccceeeeccccchhH
Q 002020 801 IIATSVLELR-WSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDLEFGELYIIKWTTLLIP 879 (980)
Q Consensus 801 ~~~~~lLe~~-w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP 879 (980)
+++.+++.+. ..|.....||+ |. +.+...++.+...+.+.+++++.+|+|||||+..++. ..+++++|
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~------~~~~~~~p 513 (713)
T TIGR03030 445 HMLHSLLTNSYLFGRVRWPFWS-EV----YETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDED------YFSPLSRP 513 (713)
T ss_pred HHHHHHHHHHHHcCCeecchHH-HH----HHHHHHHHHHHHHHHHHhCcCCCCceecCCCcccccc------ccchHHHH
Confidence 6666665543 34555567775 43 3333344555566666789999999999999754321 12358999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 002020 880 PTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLM 931 (980)
Q Consensus 880 ~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~ 931 (980)
+++++++|++|+++|+++.+..+. ...+.+++.+|.++|++-+..++.
T Consensus 514 ~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 514 YLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999865432 234567999999999998888874
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=2.7e-65 Score=620.67 Aligned_cols=473 Identities=26% Similarity=0.406 Sum_probs=372.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCch----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhhhhhccCCCCCCCc
Q 002020 176 VIIVRLIILGLFFHYRVTHPVDSA----LGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLSARFEREGEPSELA 251 (980)
Q Consensus 176 ~~~~~l~~l~~~l~~R~~~~~~~~----~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~~~~~~~~~~~~lp 251 (980)
++++.+++.+.|++||++.+++.. ..+.++++++|+++.++.++..+..+.|..|.+. ..|...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCCC
Confidence 456677788999999999987632 3455778899999999989888888888877532 1233446789
Q ss_pred eeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCcccc
Q 002020 252 AVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEFY 331 (980)
Q Consensus 252 ~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~Y 331 (980)
+|||+||||| ||+.++.+||.+++++|||.+|+.|||+|||+++ |+.+
T Consensus 261 ~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D-------~t~~---------------------- 308 (852)
T PRK11498 261 TVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-------EFRQ---------------------- 308 (852)
T ss_pred cEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh-------HHHH----------------------
Confidence 9999999999 9999999999999999999999999999999876 1110
Q ss_pred cccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCC
Q 002020 332 FSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGACD 411 (980)
Q Consensus 332 F~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~d 411 (980)
+. ++ .
T Consensus 309 ----------------------la---~~----------------------------------------------~---- 313 (852)
T PRK11498 309 ----------------------FA---QE----------------------------------------------V---- 313 (852)
T ss_pred ----------------------HH---HH----------------------------------------------C----
Confidence 00 00 0
Q ss_pred CcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCceEEE
Q 002020 412 IEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRDVCYV 490 (980)
Q Consensus 412 ~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~v~~V 490 (980)
+ +.|+.|++ +.|+||||+|++++. ++||||+++||||+ +++++|+++|++| .||+ +|+|
T Consensus 314 --~-----v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP~----VglV 373 (852)
T PRK11498 314 --G-----VKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDKK----LAMM 373 (852)
T ss_pred --C-----cEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCCC----eEEE
Confidence 1 67999887 678999999999994 79999999999995 7999999999865 7887 9999
Q ss_pred ccCccccCCCccc-------hhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCC
Q 002020 491 QFPQRFDGIDKSD-------RYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGC 563 (980)
Q Consensus 491 Q~PQ~F~n~d~~d-------r~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~ 563 (980)
|+||.|+|.|+.. .+.+++..||+..++|+|.+++++++||++++||+||
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL----------------------- 430 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL----------------------- 430 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH-----------------------
Confidence 9999999987643 2457788999999999999999999999999888876
Q ss_pred CCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCc
Q 002020 564 CSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANP 643 (980)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~ 643 (980)
+++||+++
T Consensus 431 --------------------------------------------------------------------eeVGGfd~---- 438 (852)
T PRK11498 431 --------------------------------------------------------------------DEIGGIAV---- 438 (852)
T ss_pred --------------------------------------------------------------------HHhcCCCC----
Confidence 46888865
Q ss_pred hhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhch
Q 002020 644 STLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALG 723 (980)
Q Consensus 644 ~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G 723 (980)
++++||++++++|+++||+++|+++ +.+.|++|+|++++++||.||++|
T Consensus 439 -----------------------------~titED~dlslRL~~~Gyrv~yl~~--~~a~glaPesl~~~~~QR~RWarG 487 (852)
T PRK11498 439 -----------------------------ETVTEDAHTSLRLHRRGYTSAYMRI--PQAAGLATESLSAHIGQRIRWARG 487 (852)
T ss_pred -----------------------------CccCccHHHHHHHHHcCCEEEEEec--cceeEECCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999964 688999999999999999999999
Q ss_pred hHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHH
Q 002020 724 SVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLFLSIIA 803 (980)
Q Consensus 724 ~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lfls~~~ 803 (980)
++|+++ +++|++ ++ ++++.||++|+++++|++.+++.++|+++|++|+++|+.++.. + +.. ++.++++.++
T Consensus 488 ~lQi~r-~~~pl~---~~-gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a--~-~~~-i~~y~lP~~~ 558 (852)
T PRK11498 488 MVQIFR-LDNPLT---GK-GLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYA--P-ALM-IALFVLPHMI 558 (852)
T ss_pred HHHHHH-HhChhc---cC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeC--C-hHH-HHHHHHHHHH
Confidence 999996 468986 34 4999999999999999999999999999999999999876643 2 211 2233345444
Q ss_pred HHHHhhhc-cCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEeccCCcccccccceeeeccccchhHHHH
Q 002020 804 TSVLELRW-SGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTSKAADDLEFGELYIIKWTTLLIPPTS 882 (980)
Q Consensus 804 ~~lLe~~w-~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l~iP~~~ 882 (980)
...+...| +|.....||+ | ++.+...++.....+..++++++.+|+||+||+..++. .|+|. +..|+++
T Consensus 559 ~~~l~~~~~~g~~r~~~ws-e----iye~v~a~~l~~~~~~~ll~p~~~~F~VTpKg~~~~~~----~~~~~-~~~P~~~ 628 (852)
T PRK11498 559 HASLTNSRIQGKYRHSFWS-E----IYETVLAWYIAPPTTVALFNPHKGKFNVTAKGGLVEEE----YVDWV-ISRPYIF 628 (852)
T ss_pred HHHHHHHHhcCcchHhHHH-H----HHHHHHHHHHHHHHHHHHcCccCCCcccCCCCcccccc----ceehH-HHHHHHH
Confidence 44443333 3333334443 3 33322222223334444788899999999999764431 25565 6789999
Q ss_pred HHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 002020 883 LIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLM 931 (980)
Q Consensus 883 Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~ 931 (980)
++++|++|+++|+++.+.+.. ....+.+++.+|+++|++.+..++.
T Consensus 629 L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~~ 674 (852)
T PRK11498 629 LVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAVA 674 (852)
T ss_pred HHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999865331 1234567999999999988877774
No 13
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=8.8e-36 Score=358.79 Aligned_cols=362 Identities=17% Similarity=0.208 Sum_probs=242.4
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCCch-h--------hHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhhhhhc
Q 002020 172 PYRTVIIVRLIILGLFFHYRVTHPVDSA-L--------GLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLSARFE 242 (980)
Q Consensus 172 ~~R~~~~~~l~~l~~~l~~R~~~~~~~~-~--------~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~~~~~ 242 (980)
..|+++++..++...+..|+.....+.. . .+-.+.+..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 3577777777778889999887754321 1 11122233344443334444332211 11111 0100000
Q ss_pred cCCCCCCCceeEEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhh
Q 002020 243 REGEPSELAAVDFFVSTVDPLKEPPLIT----ANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFC 318 (980)
Q Consensus 243 ~~~~~~~lp~VDvfV~t~dp~kEp~~v~----~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfC 318 (980)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456799999999999 998754 5556678889998 589999999998862111
Q ss_pred hhcCCCCCCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCcc
Q 002020 319 KKFSIEPRAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPG 398 (980)
Q Consensus 319 kk~~iepr~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~ 398 (980)
.|+ +.++++.. +.
T Consensus 176 ------------------------------~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHH-------hc--------------------------
Confidence 011 12333221 10
Q ss_pred ceeeeecCCCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh
Q 002020 399 MIQVFLGHSGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM 478 (980)
Q Consensus 399 iiqv~l~~~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff 478 (980)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||+++|||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 013489988888 77889999999999654 57899999999996 5899999999988
Q ss_pred c-CCCCCCceEEEccCccccCCCcc-chhhh-hhhhhhhhhccccccCCC--ccccccccchhhhhhccCCCCCCCCCCC
Q 002020 479 M-DPQVGRDVCYVQFPQRFDGIDKS-DRYAN-RNIVFFDVNMKGLDGIQG--PMYVGTGCMFNRQALYGYGPPTMPTLPK 553 (980)
Q Consensus 479 ~-Dp~~g~~v~~VQ~PQ~F~n~d~~-dr~~n-~~~vFfdi~~~gldg~qg--p~yvGTg~~~RR~ALyg~~p~~~~~~~~ 553 (980)
. ||+ +|.||+|+.+.|.+.- .|..+ ...++.++...|++.||+ ..|+|+|+++||+|+..
T Consensus 246 ~~dP~----vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANPR----AGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCcC----EEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 887 9999999999987631 22211 234556667788887773 56888888888888842
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHh
Q 002020 554 TSSSCSWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLME 633 (980)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e 633 (980)
T Consensus 311 -------------------------------------------------------------------------------- 310 (691)
T PRK05454 311 -------------------------------------------------------------------------------- 310 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHH
Q 002020 634 NGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDR 713 (980)
Q Consensus 634 ~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~ 713 (980)
.||.|.- . ...||..++++||+++|.+|+++||+++|+++ .+.+++++|+|+.++
T Consensus 311 ~~glp~L------------------~------g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl~~~ 365 (691)
T PRK05454 311 HCGLPPL------------------P------GRGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNLLDE 365 (691)
T ss_pred hcCCccc------------------c------ccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCHHHH
Confidence 2222210 0 01134457999999999999999999999954 246899999999999
Q ss_pred HHHHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHH-HHHHHH
Q 002020 714 LHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYC-SLPAIC 775 (980)
Q Consensus 714 l~QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~-llPil~ 775 (980)
++||.||++|++|++.. +. .++ +++.+|++|++.++.++.+...++++ +.|++.
T Consensus 366 ~~qr~RW~~G~lQ~l~~----l~---~~g-l~~~~R~~~l~g~~~yl~~P~wll~l~l~~~~~ 420 (691)
T PRK05454 366 LKRDRRWCQGNLQHLRL----LL---AKG-LHPVSRLHFLTGIMSYLSAPLWLLFLLLGTALA 420 (691)
T ss_pred HHHHHHHHhchHHHHHH----HH---hcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999752 22 234 99999999998777776654444433 344433
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=1.4e-33 Score=304.92 Aligned_cols=181 Identities=22% Similarity=0.293 Sum_probs=145.1
Q ss_pred CcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCCCCCceEEEccCccc
Q 002020 418 PRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQVGRDVCYVQFPQRF 496 (980)
Q Consensus 418 P~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~~g~~v~~VQ~PQ~F 496 (980)
++++|++|++ ++|+||||||++++..+ +++|||+++|||+. +.|++|++++.+|. ||+ +|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~~----vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANPR----AGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCCC----EEEEeCCcee
Confidence 4599999999 55679999999997532 58899999999995 68999999999885 887 9999999999
Q ss_pred cCCCcc-chh-hhhhhhhhhhhccccccCCC--ccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 497 DGIDKS-DRY-ANRNIVFFDVNMKGLDGIQG--PMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKK 572 (980)
Q Consensus 497 ~n~d~~-dr~-~n~~~vFfdi~~~gldg~qg--p~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 572 (980)
.|.+.. .+. +-++..|..+.+.|++.|++ .+++||+.++||+||... |+
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~-----------------------~~---- 188 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH-----------------------CA---- 188 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-----------------------cC----
Confidence 997642 221 22356677788888887765 588899999999888320 00
Q ss_pred CCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHH
Q 002020 573 PSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIH 652 (980)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~ 652 (980)
+.++||+
T Consensus 189 ----------------------------------------------------------~~~i~g~--------------- 195 (254)
T cd04191 189 ----------------------------------------------------------LPVLPGR--------------- 195 (254)
T ss_pred ----------------------------------------------------------CccccCC---------------
Confidence 0123443
Q ss_pred hcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCc-eecccCCCHHHHHHHHHHhhchhHH
Q 002020 653 VISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPA-FKGSAPINLSDRLHQVLRWALGSVE 726 (980)
Q Consensus 653 v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~-~~G~aP~tl~~~l~QR~RWa~G~lQ 726 (980)
.||..++++||+++|++++.+||+++|.+. +. .++++|+|++++++||.||++|++|
T Consensus 196 ---------------g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~--~~~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 196 ---------------PPFGGHILSHDFVEAALMRRAGWEVRLAPD--LEGSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred ---------------CCCCCCeecHHHHHHHHHHHcCCEEEEccC--CcceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 245568999999999999999999999954 44 5899999999999999999999987
No 15
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.1e-30 Score=298.10 Aligned_cols=233 Identities=29% Similarity=0.390 Sum_probs=172.5
Q ss_pred CceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCcc
Q 002020 250 LAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPE 329 (980)
Q Consensus 250 lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe 329 (980)
+|.|||+||++| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+.|. +
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~~~--------------~------- 106 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILEEL--------------G------- 106 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHHHH--------------H-------
Confidence 699999999999 99999999999999999997 778999999987444322211 0
Q ss_pred cccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCC
Q 002020 330 FYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGA 409 (980)
Q Consensus 330 ~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~ 409 (980)
++ ++..++
T Consensus 107 -----------------------------~~-----------------------------------~~~~~~-------- 114 (439)
T COG1215 107 -----------------------------AE-----------------------------------YGPNFR-------- 114 (439)
T ss_pred -----------------------------hh-----------------------------------cCcceE--------
Confidence 00 000011
Q ss_pred CCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEE
Q 002020 410 CDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCY 489 (980)
Q Consensus 410 ~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~ 489 (980)
++|. ++ .+++|+||+|..+.. +.+|+|+++|||++ +.+++|++++..|.|+.. ++.
T Consensus 115 ----------~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~~---~~v 170 (439)
T COG1215 115 ----------VIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPPV---GAV 170 (439)
T ss_pred ----------EEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCCe---eEE
Confidence 1111 22 678899999999984 56999999999995 799999999999998864 389
Q ss_pred EccCccccCCCccchhhhhhhhhhhhhc-----cccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002020 490 VQFPQRFDGIDKSDRYANRNIVFFDVNM-----KGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCC 564 (980)
Q Consensus 490 VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~-----~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 564 (980)
+|.||.+.+.++....+....+.|.... .+.++....++
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------------------------------ 214 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFL------------------------------------ 214 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEE------------------------------------
Confidence 9999998887651111111111111111 11111111222
Q ss_pred CCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCch
Q 002020 565 SCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPS 644 (980)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~ 644 (980)
-|++.+||++++++.||+..
T Consensus 215 -------------------------------------------------------~G~~~~~rr~aL~~~g~~~~----- 234 (439)
T COG1215 215 -------------------------------------------------------SGSSSAFRRSALEEVGGWLE----- 234 (439)
T ss_pred -------------------------------------------------------cceeeeEEHHHHHHhCCCCC-----
Confidence 36667777777788887543
Q ss_pred hHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchh
Q 002020 645 TLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGS 724 (980)
Q Consensus 645 ~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~ 724 (980)
.++|||.+++++++.+|||+.|+++ +.+++++|+|+.++++||.||++|+
T Consensus 235 ----------------------------~~i~ED~~lt~~l~~~G~~~~~~~~--~~~~~~~p~t~~~~~~Qr~RW~~g~ 284 (439)
T COG1215 235 ----------------------------DTITEDADLTLRLHLRGYRVVYVPE--AIVWTEAPETLKELWRQRLRWARGG 284 (439)
T ss_pred ----------------------------CceeccHHHHHHHHHCCCeEEEeec--ceEeeeCcccHHHHHHHHHHHHccc
Confidence 7999999999999999999999964 7899999999999999999999999
Q ss_pred HHHHHh
Q 002020 725 VEIFLS 730 (980)
Q Consensus 725 lQil~s 730 (980)
+|++..
T Consensus 285 ~~~~~~ 290 (439)
T COG1215 285 LQVLLL 290 (439)
T ss_pred ceeeeh
Confidence 999864
No 16
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=99.97 E-value=2.9e-32 Score=237.37 Aligned_cols=57 Identities=49% Similarity=1.183 Sum_probs=34.3
Q ss_pred CCCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 2 MQSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 2 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
-.+++|+||||||+||+++|||+|||||||+|||||||||||||||+|+||||||||
T Consensus 5 k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 5 KNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRY 61 (80)
T ss_dssp S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B-
T ss_pred hhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCc
Confidence 468999999999999999999999999999999999999999999999999999999
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=1.3e-28 Score=285.12 Aligned_cols=233 Identities=21% Similarity=0.238 Sum_probs=167.9
Q ss_pred CCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCC
Q 002020 248 SELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRA 327 (980)
Q Consensus 248 ~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~ 327 (980)
...|.|+|+||++| |+. .+.+|+.|+++++||. +.++|.|||+++-|.+.+.|
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp~--~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYTN--IEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCCC--eEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999999 884 5789999999999994 88999999998743332211
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCC
Q 002020 328 PEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHS 407 (980)
Q Consensus 328 Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~ 407 (980)
+.++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1000
Q ss_pred CCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCc
Q 002020 408 GACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRD 486 (980)
Q Consensus 408 g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~ 486 (980)
.|++.++.+++ ...||+|+|++++. +++||++++|+|+. ++|++|++.+..| .||+
T Consensus 129 ---------~~~v~vv~~~~-----n~Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~~---- 185 (444)
T PRK14583 129 ---------DPRLRVIHLAH-----NQGKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANPR---- 185 (444)
T ss_pred ---------CCCEEEEEeCC-----CCCHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCCC----
Confidence 12244554443 23499999999984 68999999999995 6999999999766 4665
Q ss_pred eEEEccCccccCCCcc-chh-hhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002020 487 VCYVQFPQRFDGIDKS-DRY-ANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCC 564 (980)
Q Consensus 487 v~~VQ~PQ~F~n~d~~-dr~-~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 564 (980)
++.||..++..|.+.. .+. ..+...++....++.+-.+.++.+
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~----------------------------------- 230 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTV----------------------------------- 230 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEe-----------------------------------
Confidence 8999998776543211 111 112222233333222222111111
Q ss_pred CCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCch
Q 002020 565 SCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPS 644 (980)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~ 644 (980)
-|.+.+||+++++++||+++
T Consensus 231 -------------------------------------------------------sG~~~~~rr~al~~vGg~~~----- 250 (444)
T PRK14583 231 -------------------------------------------------------SGVVAAFRRRALADVGYWSP----- 250 (444)
T ss_pred -------------------------------------------------------cCceeEEEHHHHHHcCCCCC-----
Confidence 14445666777778898754
Q ss_pred hHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchh
Q 002020 645 TLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGS 724 (980)
Q Consensus 645 ~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~ 724 (980)
+.++||++++++++.+||++.|++. +.+++++|+|++++++||.||++|.
T Consensus 251 ----------------------------~~i~ED~dl~~rl~~~G~~i~~~p~--a~~~~~~p~t~~~~~~Qr~RW~~G~ 300 (444)
T PRK14583 251 ----------------------------DMITEDIDISWKLQLKHWSVFFEPR--GLCWILMPETLRGLWKQRLRWAQGG 300 (444)
T ss_pred ----------------------------CcccccHHHHHHHHHcCCeEEEeec--cEEeeeCCCCHHHHHHHHHHHhCcH
Confidence 6899999999999999999999953 7899999999999999999999999
Q ss_pred HHHHHhh
Q 002020 725 VEIFLSR 731 (980)
Q Consensus 725 lQil~sk 731 (980)
+|+++++
T Consensus 301 ~~~~~~~ 307 (444)
T PRK14583 301 AEVFLKN 307 (444)
T ss_pred HHHHHHH
Confidence 9999764
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=7.5e-27 Score=270.40 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=193.4
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
++.+|.|+|+||++| |+ ..+.+||.|+++++||.+++.++|.|||+++-|.+.+.|++
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~------------------ 102 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQ------------------ 102 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHH------------------
Confidence 467899999999999 77 78999999999999999999999999999874443322210
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
+ + +|
T Consensus 103 ---------------------------------~----------~------------------------~~--------- 106 (439)
T TIGR03111 103 ---------------------------------N----------E------------------------FP--------- 106 (439)
T ss_pred ---------------------------------H----------h------------------------CC---------
Confidence 0 0 11
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCCCCC
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQVGR 485 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~~g~ 485 (980)
++ ++.+.+ +.+.||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||+
T Consensus 107 ------------~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~~--- 161 (439)
T TIGR03111 107 ------------GL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNPD--- 161 (439)
T ss_pred ------------Ce-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCCC---
Confidence 11 121111 225799999999984 68999999999996 69999999998875 776
Q ss_pred ceEEEccCccccCCCccc-------hhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCC
Q 002020 486 DVCYVQFPQRFDGIDKSD-------RYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSC 558 (980)
Q Consensus 486 ~v~~VQ~PQ~F~n~d~~d-------r~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~ 558 (980)
++.|+..+.- +.+..+ ++..++. +++.... ++.|-+ ++.+
T Consensus 162 -v~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~y~~~--------~l~~r~--~~s~-------------------- 208 (439)
T TIGR03111 162 -IHAMTGVILT-DKELIEKTKGRFLKLIRRCE-YFEYAQA--------FLAGRN--FESQ-------------------- 208 (439)
T ss_pred -eEEEEeEEec-CchhhhhhcchhhhHhHHhH-HHHHHHH--------HHhhhH--HHHh--------------------
Confidence 6655544321 111000 0000000 1111000 000000 0000
Q ss_pred CCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCC
Q 002020 559 SWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVP 638 (980)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~ 638 (980)
....---.|+..+||++++++.||++
T Consensus 209 ------------------------------------------------------~~~~~~~sGa~~~~Rr~~l~~vggf~ 234 (439)
T TIGR03111 209 ------------------------------------------------------VNSLFTLSGAFSAFRRETILKTQLYN 234 (439)
T ss_pred ------------------------------------------------------cCCeEEEccHHHhhhHHHHHHhCCCC
Confidence 00000113677789999999999986
Q ss_pred CCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHh-CCcEEEEecCCCCceecccCCCHHHHHHHH
Q 002020 639 DSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHC-RGWRSLYCMPLRPAFKGSAPINLSDRLHQV 717 (980)
Q Consensus 639 ~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~-~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR 717 (980)
+ ++++||++++++++. .|+++.|+++ +.++.++|+|++++++||
T Consensus 235 ~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~--a~~~~~~p~t~~~~~~QR 279 (439)
T TIGR03111 235 S---------------------------------ETVGEDTDMTFQIRELLDGKVYLCEN--AIFYVDPIDGLNKLYTQR 279 (439)
T ss_pred C---------------------------------CCcCccHHHHHHHHHhcCCeEEECCC--CEEEEECCcCHHHHHHHH
Confidence 5 689999999999975 6999999854 789999999999999999
Q ss_pred HHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccc
Q 002020 718 LRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFII 783 (980)
Q Consensus 718 ~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~ii 783 (980)
.||++|.+|++.....+.. + +..++.+++.+...+......++.+++.++++++.+++..+.
T Consensus 280 ~RW~rG~~qv~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 280 QRWQRGELEVSHMFFESAN---K-SIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHhccHHHHHHHHHhhhh---h-chhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 9999999999965433332 1 225556665554444555567787888888888888775433
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=9.4e-27 Score=266.61 Aligned_cols=236 Identities=26% Similarity=0.330 Sum_probs=169.4
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
....|.|.|+||++| |+ ..+.+|+.|+++++|| +..++|.|||.++-|.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~--------------------- 102 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD--------------------- 102 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH---------------------
Confidence 356899999999999 86 6789999999999999 47789999999873322111
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
+ +.+
T Consensus 103 ---------------------------------~-------~~~------------------------------------ 106 (420)
T PRK11204 103 ---------------------------------R-------LAA------------------------------------ 106 (420)
T ss_pred ---------------------------------H-------HHH------------------------------------
Confidence 1 100
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCC
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGR 485 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~ 485 (980)
+.|++.++.++++ ..||+|+|.+++. +++||++++|+|.+ +.|++|++++..| .||+
T Consensus 107 ---------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~~--- 164 (420)
T PRK11204 107 ---------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNPR--- 164 (420)
T ss_pred ---------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCCC---
Confidence 0133667766553 3499999999984 68999999999995 6899999999988 5776
Q ss_pred ceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 486 DVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCS 565 (980)
Q Consensus 486 ~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 565 (980)
++.||...+..|... ..+..+...|... .| ..-+-+..+|.
T Consensus 165 -v~~v~g~~~~~~~~~--~~~~~~~~~~~~~------------~~--~~~~~~~~~~~---------------------- 205 (420)
T PRK11204 165 -VGAVTGNPRIRNRST--LLGRIQVGEFSSI------------IG--LIKRAQRVYGR---------------------- 205 (420)
T ss_pred -eEEEECCceeccchh--HHHHHHHHHHHHh------------hh--HHHHHHHHhCC----------------------
Confidence 999999877655321 1111111111000 00 00000111110
Q ss_pred CCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchh
Q 002020 566 CCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPST 645 (980)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~ 645 (980)
...--|.+..||+++++++||+++
T Consensus 206 --------------------------------------------------~~~~~G~~~~~rr~~l~~vgg~~~------ 229 (420)
T PRK11204 206 --------------------------------------------------VFTVSGVITAFRKSALHEVGYWST------ 229 (420)
T ss_pred --------------------------------------------------ceEecceeeeeeHHHHHHhCCCCC------
Confidence 000125566788888889998754
Q ss_pred HHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhH
Q 002020 646 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSV 725 (980)
Q Consensus 646 ~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~l 725 (980)
+.++||++++++++.+||++.|+++ +.++++.|+|++++++||.||++|++
T Consensus 230 ---------------------------~~~~ED~~l~~rl~~~G~~i~~~p~--~~~~~~~p~t~~~~~~Qr~RW~~G~~ 280 (420)
T PRK11204 230 ---------------------------DMITEDIDISWKLQLRGWDIRYEPR--ALCWILMPETLKGLWKQRLRWAQGGA 280 (420)
T ss_pred ---------------------------CcccchHHHHHHHHHcCCeEEeccc--cEEEeECcccHHHHHHHHHHHhcCHH
Confidence 6789999999999999999999954 78999999999999999999999999
Q ss_pred HHHHhh
Q 002020 726 EIFLSR 731 (980)
Q Consensus 726 Qil~sk 731 (980)
|.+++.
T Consensus 281 ~~l~~~ 286 (420)
T PRK11204 281 EVLLKN 286 (420)
T ss_pred HHHHHH
Confidence 999754
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=2e-24 Score=252.96 Aligned_cols=265 Identities=18% Similarity=0.182 Sum_probs=175.7
Q ss_pred CCceeEEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCC
Q 002020 249 ELAAVDFFVSTVDPLKEPPLITANTVLSIL-ALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRA 327 (980)
Q Consensus 249 ~lp~VDvfV~t~dp~kEp~~v~~nTvls~l-a~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~ 327 (980)
..|+|+|+||++| |. .++.+||.|++ ++||| ++.|+|.||+..+-|.+.+.|.
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~l-------------------- 117 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDRL-------------------- 117 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHHH--------------------
Confidence 4899999999999 97 79999999975 78996 6889999998887444433221
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCC
Q 002020 328 PEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHS 407 (980)
Q Consensus 328 Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~ 407 (980)
+ ..||+
T Consensus 118 -----------------------------------------~------------------------~~~p~--------- 123 (504)
T PRK14716 118 -----------------------------------------A------------------------ARYPR--------- 123 (504)
T ss_pred -----------------------------------------H------------------------HHCCC---------
Confidence 0 01333
Q ss_pred CCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhcc--ccCCC---CEEEEecCCCCCCchHHHHHHHhhhcCCC
Q 002020 408 GACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSA--VLTNA---PYILNLDCDHYVNNSKAVREAMCFMMDPQ 482 (980)
Q Consensus 408 g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa--~~tng---~~il~lD~D~~i~~~~~Lr~amcff~Dp~ 482 (980)
+..+. .+++| .+.||+|||.+++... -...| ++|+++|||.+ ++|++|+....++.|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 21111 12222 3579999999987421 01234 99999999996 589999986655544
Q ss_pred CCCceEEEccCccccCCCccch----hhhhhhhhhhhhccccccCCCcc-ccccccchhhhhhccCCCCCCCCCCCCCCC
Q 002020 483 VGRDVCYVQFPQRFDGIDKSDR----YANRNIVFFDVNMKGLDGIQGPM-YVGTGCMFNRQALYGYGPPTMPTLPKTSSS 557 (980)
Q Consensus 483 ~g~~v~~VQ~PQ~F~n~d~~dr----~~n~~~vFfdi~~~gldg~qgp~-yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~ 557 (980)
.++||.|+...+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 458999987665433322 22222222333455566666553 567777777776610
Q ss_pred CCCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCC
Q 002020 558 CSWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGV 637 (980)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~ 637 (980)
...+.||.
T Consensus 247 ------------------------------------------------------------------------l~~~~GG~ 254 (504)
T PRK14716 247 ------------------------------------------------------------------------LAAERGGQ 254 (504)
T ss_pred ------------------------------------------------------------------------HHhhcCCC
Confidence 00122442
Q ss_pred CCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCc---------------e
Q 002020 638 PDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPA---------------F 702 (980)
Q Consensus 638 ~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~---------------~ 702 (980)
+|..+++|||+++|++++.+|||++|++. ++ +
T Consensus 255 -------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~--ai~~~~~~~~~~~~~v~t 301 (504)
T PRK14716 255 -------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRV--RADDTTDRPDRRGEPIAT 301 (504)
T ss_pred -------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEecc--cccccccccccccccccc
Confidence 25558999999999999999999999953 42 4
Q ss_pred ecccCCCHHHHHHHHHHhhchh-HHHHHhhcCccccccCCCCCChhhHHHHHhhhh
Q 002020 703 KGSAPINLSDRLHQVLRWALGS-VEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIV 757 (980)
Q Consensus 703 ~G~aP~tl~~~l~QR~RWa~G~-lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~l 757 (980)
++++|+|++++++||.||+.|. +|...+.- ...+...+.+.|++|.+.+..++
T Consensus 302 ~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~g--w~~~~~~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 302 REFFPDTFKAAVRQKARWIYGIAFQGWERLG--WKGPAATKYMLWRDRKGLLTNLL 355 (504)
T ss_pred cccCccCHHHHHHHHHHHHhchHHhhHHhcC--CCCchhhhhhHHHHHHHHHHHHH
Confidence 5889999999999999999995 78875321 11011123366788888776544
No 21
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.93 E-value=1e-24 Score=229.04 Aligned_cols=229 Identities=22% Similarity=0.327 Sum_probs=165.0
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEF 330 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~ 330 (980)
|.|.|+||++| |. ..+..++.|+++++||.+++.++|+|| +++-|.+.+.+..
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---------------------- 53 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---------------------- 53 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH----------------------
Confidence 67999999999 86 678999999999999999999999998 6664444332210
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCC
Q 002020 331 YFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGAC 410 (980)
Q Consensus 331 YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~ 410 (980)
.++.+
T Consensus 54 -------------------------~~~~~-------------------------------------------------- 58 (232)
T cd06437 54 -------------------------EEYAA-------------------------------------------------- 58 (232)
T ss_pred -------------------------HHHhh--------------------------------------------------
Confidence 00000
Q ss_pred CCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEE
Q 002020 411 DIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYV 490 (980)
Q Consensus 411 d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~V 490 (980)
.-+++.++.+.+++|+ |++|+|++++. ++++||+++|+|.+ ++|++|+++..++.||+ +++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~~----v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADPK----LGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCCC----eEEE
Confidence 0133778888776665 99999999984 68999999999996 58999999878887876 8999
Q ss_pred ccCccccCCCccc--hhh-hhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 491 QFPQRFDGIDKSD--RYA-NRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCC 567 (980)
Q Consensus 491 Q~PQ~F~n~d~~d--r~~-n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~ 567 (980)
|.+..+.+.+.+- ++. -....++...+.+......
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 158 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGL------------------------------------------ 158 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCC------------------------------------------
Confidence 9987665543221 100 0000111111111100000
Q ss_pred CCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHH
Q 002020 568 CPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLI 647 (980)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~ 647 (980)
+..-.|+..+||+++++++||++.
T Consensus 159 ------------------------------------------------~~~~~g~~~~~rr~~~~~vgg~~~-------- 182 (232)
T cd06437 159 ------------------------------------------------FFNFNGTAGVWRKECIEDAGGWNH-------- 182 (232)
T ss_pred ------------------------------------------------eEEeccchhhhhHHHHHHhCCCCC--------
Confidence 001125566788888899999864
Q ss_pred HHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchh
Q 002020 648 KEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGS 724 (980)
Q Consensus 648 ~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~ 724 (980)
.++.||+++++|++.+||+++|++. +.++...|+|+.++++||+||++|.
T Consensus 183 -------------------------~~~~ED~~l~~rl~~~G~~~~~~~~--~~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 -------------------------DTLTEDLDLSYRAQLKGWKFVYLDD--VVVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred -------------------------CcchhhHHHHHHHHHCCCeEEEecc--ceeeeeCCcCHHHHHHHHHHhccCC
Confidence 4678999999999999999999953 7899999999999999999999984
No 22
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.93 E-value=7.3e-25 Score=227.95 Aligned_cols=229 Identities=36% Similarity=0.566 Sum_probs=173.2
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEF 330 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~ 330 (980)
|.|.|+||++| |++..+..++.|+++++||.+++.++|+|||.++-|.+-+.
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~------------------------- 52 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAA------------------------- 52 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHH-------------------------
Confidence 68999999999 88889999999999999999989999999998762221110
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCC
Q 002020 331 YFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGAC 410 (980)
Q Consensus 331 YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~ 410 (980)
+ +..+
T Consensus 53 -----------------------------~-------~~~~--------------------------------------- 57 (234)
T cd06421 53 -----------------------------E-------LGVE--------------------------------------- 57 (234)
T ss_pred -----------------------------H-------hhcc---------------------------------------
Confidence 0 0000
Q ss_pred CCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcC-CCCCCceEE
Q 002020 411 DIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMD-PQVGRDVCY 489 (980)
Q Consensus 411 d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~D-p~~g~~v~~ 489 (980)
.++.|+.+++ +.+.|+||+|++++. .+++||+.+|+|.++ +|++|.+.+..|.+ |+ ++.
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~~~----~~~ 117 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHVP-TPDFLRRTLGYFLDDPK----VAL 117 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccCc-CccHHHHHHHHHhcCCC----eEE
Confidence 0155666665 455699999999984 589999999999975 89999999999876 65 899
Q ss_pred EccCccccCCCccc----hhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 490 VQFPQRFDGIDKSD----RYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCS 565 (980)
Q Consensus 490 VQ~PQ~F~n~d~~d----r~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 565 (980)
||+++.+.+.+..+ .+......|+.....+...+....+.|++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------------------------------- 164 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSG--------------------------------- 164 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCce---------------------------------
Confidence 99999998776542 22333444444444333333333333333
Q ss_pred CCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchh
Q 002020 566 CCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPST 645 (980)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~ 645 (980)
.+||+++++++||++.
T Consensus 165 ----------------------------------------------------------~~~r~~~~~~ig~~~~------ 180 (234)
T cd06421 165 ----------------------------------------------------------AVVRREALDEIGGFPT------ 180 (234)
T ss_pred ----------------------------------------------------------eeEeHHHHHHhCCCCc------
Confidence 3455566677888864
Q ss_pred HHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhH
Q 002020 646 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSV 725 (980)
Q Consensus 646 ~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~l 725 (980)
..+.||++++++++.+||+++|.+. +.+++..|.++.++++||.||.+|.+
T Consensus 181 ---------------------------~~~~eD~~l~~r~~~~g~~i~~~~~--~~~~~~~~~~~~~~~~q~~rw~~~~~ 231 (234)
T cd06421 181 ---------------------------DSVTEDLATSLRLHAKGWRSVYVPE--PLAAGLAPETLAAYIKQRLRWARGML 231 (234)
T ss_pred ---------------------------cceeccHHHHHHHHHcCceEEEecC--ccccccCCccHHHHHHHHHHHhcCCe
Confidence 4668999999999999999999964 68899999999999999999999999
Q ss_pred HHH
Q 002020 726 EIF 728 (980)
Q Consensus 726 Qil 728 (980)
|++
T Consensus 232 ~~~ 234 (234)
T cd06421 232 QIL 234 (234)
T ss_pred eeC
Confidence 863
No 23
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.92 E-value=4.6e-23 Score=250.30 Aligned_cols=171 Identities=20% Similarity=0.327 Sum_probs=121.9
Q ss_pred CCchhhHHHHHHhccc---cCCC--CEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCCCccch----
Q 002020 434 HKKAGAENALVRVSAV---LTNA--PYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGIDKSDR---- 504 (980)
Q Consensus 434 h~KAGalNallrvsa~---~tng--~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d~~dr---- 504 (980)
+.||+|||.++....- .+.+ +.++++|||.+ ++|++|+ .+.+|.++. ++||.|..-.+.+.+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~~-----~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVERK-----DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCCC-----CeEeecccCCCccHHHHHHHH
Confidence 5799999999875310 0133 56888999995 6999998 678888763 79999966333222222
Q ss_pred hhhhhhhhhhhhccccccCCCc-cccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHhhh
Q 002020 505 YANRNIVFFDVNMKGLDGIQGP-MYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLSEAYRD 583 (980)
Q Consensus 505 ~~n~~~vFfdi~~~gldg~qgp-~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (980)
|..+....+...+++++.++|+ .+.|+|++|+|++|
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 3334444455667788888665 45567777744332
Q ss_pred hhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcC-CCCCCCCchhHHHHHHHhccccccccc
Q 002020 584 AKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENG-GVPDSANPSTLIKEAIHVISCGYEEKT 662 (980)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~G-G~~~~~~~~~~~~ea~~v~sC~Ye~~T 662 (980)
+++.+.| |+
T Consensus 242 ---------------------------------------------~al~~~ggg~------------------------- 251 (727)
T PRK11234 242 ---------------------------------------------TALLEDGDGI------------------------- 251 (727)
T ss_pred ---------------------------------------------HHHHHhcCCC-------------------------
Confidence 2344555 44
Q ss_pred ccccccccccccccchHHHHHHHHhCCcEEEEecCC----------C-----------CceecccCCCHHHHHHHHHHhh
Q 002020 663 EWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPL----------R-----------PAFKGSAPINLSDRLHQVLRWA 721 (980)
Q Consensus 663 ~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~----------r-----------a~~~G~aP~tl~~~l~QR~RWa 721 (980)
||..+++|||+++|++|+.+||+++|++.. + ..+++..|+|+++.++||.||.
T Consensus 252 ------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~ 325 (727)
T PRK11234 252 ------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWI 325 (727)
T ss_pred ------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHHHHH
Confidence 477899999999999999999999999610 0 2367889999999999999999
Q ss_pred ch-hHHHHHh
Q 002020 722 LG-SVEIFLS 730 (980)
Q Consensus 722 ~G-~lQil~s 730 (980)
+| .+|.+..
T Consensus 326 ~G~~~q~~~~ 335 (727)
T PRK11234 326 IGIVFQGFKT 335 (727)
T ss_pred cccHHHHHHH
Confidence 99 6888743
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.91 E-value=8.8e-23 Score=213.99 Aligned_cols=173 Identities=27% Similarity=0.394 Sum_probs=122.6
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGI 499 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~ 499 (980)
+.++..++.+| .|+||+|.+++... .+++||+.+|+|-. ..|++|.+++.+|.+|+ ++.||+++.+.+.
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDPR----VGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCCC----eeEEecCccccCC
Confidence 55666665444 49999999998642 46899999999985 58999999999987765 8999998765432
Q ss_pred Cccchhhh----hhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 002020 500 DKSDRYAN----RNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSK 575 (980)
Q Consensus 500 d~~dr~~n----~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 575 (980)
.. ..+.- ....+|...+......+..+
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------------ 157 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAII------------------------------------------------ 157 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceE------------------------------------------------
Confidence 11 11100 00001111111111111111
Q ss_pred chhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcc
Q 002020 576 DLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVIS 655 (980)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~s 655 (980)
..|+..++|++++.++||+++
T Consensus 158 -------------------------------------------~~g~~~~~rr~~~~~iGgf~~---------------- 178 (236)
T cd06435 158 -------------------------------------------QHGTMCLIRRSALDDVGGWDE---------------- 178 (236)
T ss_pred -------------------------------------------EecceEEEEHHHHHHhCCCCC----------------
Confidence 124555677788888999864
Q ss_pred cccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhHHHHHh
Q 002020 656 CGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLS 730 (980)
Q Consensus 656 C~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQil~s 730 (980)
....||++++++++.+||++.|++. +..+...|.|+.++++||+||++|++|++.+
T Consensus 179 -----------------~~~~eD~dl~~r~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 -----------------WCITEDSELGLRMHEAGYIGVYVAQ--SYGHGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred -----------------ccccchHHHHHHHHHCCcEEEEcch--hhccCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 4568999999999999999999953 6778999999999999999999999999863
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=1.3e-22 Score=215.19 Aligned_cols=233 Identities=22% Similarity=0.284 Sum_probs=166.0
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEF 330 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~ 330 (980)
|.|.|+||++| |+ ..+..|+.|+++++||.+++.++|.|||+++-|.+.+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 78999999999 87 788999999999999988999999999988743332111
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCC
Q 002020 331 YFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGAC 410 (980)
Q Consensus 331 YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~ 410 (980)
|.. +
T Consensus 53 ---------------------------~~~---------------~---------------------------------- 56 (241)
T cd06427 53 ---------------------------LRL---------------P---------------------------------- 56 (241)
T ss_pred ---------------------------hcc---------------C----------------------------------
Confidence 000 0
Q ss_pred CCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEE
Q 002020 411 DIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYV 490 (980)
Q Consensus 411 d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~V 490 (980)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.. ..|++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001144443322 23699999999984 68999999999997 5799999999988631 1249999
Q ss_pred ccCccccCCCccc--h-hhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 491 QFPQRFDGIDKSD--R-YANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCC 567 (980)
Q Consensus 491 Q~PQ~F~n~d~~d--r-~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~ 567 (980)
|.+..+.+...+- + +..+...+|+..+++....+.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 159 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPI---------------------------------------- 159 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCee----------------------------------------
Confidence 9988877543221 0 11111112222222221111100
Q ss_pred CCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHH
Q 002020 568 CPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLI 647 (980)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~ 647 (980)
...|+..++|++++.++||+.+
T Consensus 160 --------------------------------------------------~~~g~~~~~rr~~~~~vgg~~~-------- 181 (241)
T cd06427 160 --------------------------------------------------PLGGTSNHFRTDVLRELGGWDP-------- 181 (241)
T ss_pred --------------------------------------------------ecCCchHHhhHHHHHHcCCCCc--------
Confidence 0125566788888999999854
Q ss_pred HHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhHHH
Q 002020 648 KEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEI 727 (980)
Q Consensus 648 ~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQi 727 (980)
...+||++++++++.+||+++|++. ..+...|+|++++++||.||+.|.+|+
T Consensus 182 -------------------------~~~~eD~~l~~rl~~~G~r~~~~~~---~~~~~~~~~~~~~~~q~~Rw~~g~~~~ 233 (241)
T cd06427 182 -------------------------FNVTEDADLGLRLARAGYRTGVLNS---TTLEEANNALGNWIRQRSRWIKGYMQT 233 (241)
T ss_pred -------------------------ccchhhHHHHHHHHHCCceEEEecc---cccccCcHhHHHHHHHHHHHhccHHHH
Confidence 4678999999999999999999943 457899999999999999999999999
Q ss_pred HHh
Q 002020 728 FLS 730 (980)
Q Consensus 728 l~s 730 (980)
+..
T Consensus 234 ~~~ 236 (241)
T cd06427 234 WLV 236 (241)
T ss_pred HHH
Confidence 864
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.88 E-value=3.7e-23 Score=215.43 Aligned_cols=224 Identities=28% Similarity=0.389 Sum_probs=133.5
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEF 330 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~ 330 (980)
|+|.|+||++| |+. .+.++|.|+++++|| ++.++|+||+.++-|.+.+.
T Consensus 1 P~v~Vvip~~~---~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~~------------------------- 49 (228)
T PF13641_consen 1 PRVSVVIPAYN---EDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEILR------------------------- 49 (228)
T ss_dssp --EEEE--BSS----HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTHH-------------------------
T ss_pred CEEEEEEEecC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHHH-------------------------
Confidence 78999999999 764 999999999999995 48999999998762222111
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCC
Q 002020 331 YFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGAC 410 (980)
Q Consensus 331 YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~ 410 (980)
+++++ +|+
T Consensus 50 ------------------------------------~~~~~------------------------~~~------------ 57 (228)
T PF13641_consen 50 ------------------------------------ALAAR------------------------YPR------------ 57 (228)
T ss_dssp ------------------------------------HHHHT------------------------TGG------------
T ss_pred ------------------------------------HHHHH------------------------cCC------------
Confidence 11110 110
Q ss_pred CCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEE
Q 002020 411 DIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYV 490 (980)
Q Consensus 411 d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~V 490 (980)
-++.++.+.+++| ...|++|+|.+++. ..+++|+++|+|.+ ++|++|++++.+|.+|+ ++.|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~~----~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADPG----VGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBSS------EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhCC----CCeE
Confidence 0156776655331 23699999999985 56999999999996 48999999999888876 9999
Q ss_pred ccCccccCCCccchhhhhhhhhhhh----hccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 491 QFPQRFDGIDKSDRYANRNIVFFDV----NMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSC 566 (980)
Q Consensus 491 Q~PQ~F~n~d~~dr~~n~~~vFfdi----~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~ 566 (980)
|.+..+++ +.+- +......++.. ...+....+.+++.|++
T Consensus 120 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~---------------------------------- 163 (228)
T PF13641_consen 120 GGPVFPDN-DRNW-LTRLQDLFFARWHLRFRSGRRALGVAFLSGSG---------------------------------- 163 (228)
T ss_dssp EEEEEETT-CCCE-EEE-TT--S-EETTTS-TT-B----S-B--TE----------------------------------
T ss_pred eeeEeecC-CCCH-HHHHHHHHHhhhhhhhhhhhcccceeeccCcE----------------------------------
Confidence 98886664 3221 11111111111 11122222223333444
Q ss_pred CCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhH
Q 002020 567 CCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTL 646 (980)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~ 646 (980)
..||++++.++||+++
T Consensus 164 ---------------------------------------------------------~~~rr~~~~~~g~fd~------- 179 (228)
T PF13641_consen 164 ---------------------------------------------------------MLFRRSALEEVGGFDP------- 179 (228)
T ss_dssp ---------------------------------------------------------EEEEHHHHHHH-S--S-------
T ss_pred ---------------------------------------------------------EEEEHHHHHHhCCCCC-------
Confidence 4455555667888753
Q ss_pred HHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhch
Q 002020 647 IKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALG 723 (980)
Q Consensus 647 ~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G 723 (980)
....||++++++++.+||+++|++. +.++...|.|++++++||.||+.|
T Consensus 180 --------------------------~~~~eD~~l~~r~~~~G~~~~~~~~--~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 --------------------------FILGEDFDLCLRLRAAGWRIVYAPD--ALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp --------------------------SSSSHHHHHHHHHHHTT--EEEEEE--EEEEE--SSSTHHHHHHHHHHH--
T ss_pred --------------------------CCcccHHHHHHHHHHCCCcEEEECC--cEEEEeCCCCHHHHHHHHhccCcC
Confidence 5677999999999999999999953 788999999999999999999987
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.84 E-value=1.6e-19 Score=205.16 Aligned_cols=235 Identities=17% Similarity=0.182 Sum_probs=158.9
Q ss_pred CCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCC
Q 002020 248 SELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRA 327 (980)
Q Consensus 248 ~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~ 327 (980)
...|+|.|+||++| |.+ .+.+++.|++++|||. +.++|.||++++-|.+.+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~---------------------- 89 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR---------------------- 89 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH----------------------
Confidence 34799999999999 875 5789999999999996 7789999988763332111
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCC
Q 002020 328 PEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHS 407 (980)
Q Consensus 328 Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~ 407 (980)
+ +.+ +||.
T Consensus 90 --------------------------------~-------~~~------------------------~~p~--------- 97 (373)
T TIGR03472 90 --------------------------------R-------LRA------------------------DFPD--------- 97 (373)
T ss_pred --------------------------------H-------HHH------------------------hCCC---------
Confidence 0 100 0111
Q ss_pred CCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCce
Q 002020 408 GACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDV 487 (980)
Q Consensus 408 g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v 487 (980)
.++.++.+.++.| .+.|++|+|.+++. +.+|+|+.+|+|.. +.|++|++++..|.||+ +
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~~----v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADPD----V 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCCC----c
Confidence 1255554444332 45799999888873 68999999999996 58999999999998887 8
Q ss_pred EEEccCccccCCCccchhhhhhh-hhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 488 CYVQFPQRFDGIDKSDRYANRNI-VFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSC 566 (980)
Q Consensus 488 ~~VQ~PQ~F~n~d~~dr~~n~~~-vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~ 566 (980)
+.|+.+.+..+ ... +.++.. .+. +.. ++-+. ... ...|
T Consensus 157 ~~V~~~~~~~~--~~~-~~~~l~~~~~-------~~~---~~~~~--~~~--~~~~------------------------ 195 (373)
T TIGR03472 157 GLVTCLYRGRP--VPG-FWSRLGAMGI-------NHN---FLPSV--MVA--RALG------------------------ 195 (373)
T ss_pred ceEeccccCCC--CCC-HHHHHHHHHh-------hhh---hhHHH--HHH--Hhcc------------------------
Confidence 89998644221 111 111110 110 000 00000 000 0000
Q ss_pred CCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhH
Q 002020 567 CCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTL 646 (980)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~ 646 (980)
......|++.+||+++++++||++.
T Consensus 196 ------------------------------------------------~~~~~~G~~~a~RR~~l~~iGGf~~------- 220 (373)
T TIGR03472 196 ------------------------------------------------RARFCFGATMALRRATLEAIGGLAA------- 220 (373)
T ss_pred ------------------------------------------------CCccccChhhheeHHHHHHcCChHH-------
Confidence 0001247788999999999999853
Q ss_pred HHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhH
Q 002020 647 IKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSV 725 (980)
Q Consensus 647 ~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~l 725 (980)
...+++||++++.+++++||++.|.+. +......|+|++++++||.||++...
T Consensus 221 ------------------------~~~~~~ED~~l~~~i~~~G~~v~~~~~--~v~~~~~~~s~~~~~~q~~RW~r~~~ 273 (373)
T TIGR03472 221 ------------------------LAHHLADDYWLGELVRALGLRVVLAPV--VVDTDVHETSFATLLAHELRWSRTIR 273 (373)
T ss_pred ------------------------hcccchHHHHHHHHHHHcCCeEEecch--hhhcCCCccCHHHHHHHHHHHHhhhh
Confidence 114678999999999999999999853 67778888999999999999985443
No 28
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.84 E-value=7.9e-21 Score=203.11 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=47.9
Q ss_pred ccccchHHHHHHHHhCCcEEEE--ecCCCCceecccCCCHHHHHHHHHHhhchhHH
Q 002020 673 GSVTEDILTGFKMHCRGWRSLY--CMPLRPAFKGSAPINLSDRLHQVLRWALGSVE 726 (980)
Q Consensus 673 ~sITED~~tg~rL~~~GwrsvY--~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQ 726 (980)
.+++||.+++++|..+||++.| ++. +.++.++|+|+.++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~--a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPG--AVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEecc--cEEEEECCCCHHHHHHHhHhhhccccc
Confidence 5789999999999999999999 743 889999999999999999999999873
No 29
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.82 E-value=2.6e-18 Score=207.22 Aligned_cols=172 Identities=18% Similarity=0.276 Sum_probs=124.1
Q ss_pred CCCchhhHHHHHHhc---cccCCCCE--EEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCcc-ccCCCcc---c
Q 002020 433 HHKKAGAENALVRVS---AVLTNAPY--ILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQR-FDGIDKS---D 503 (980)
Q Consensus 433 hh~KAGalNallrvs---a~~tng~~--il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~-F~n~d~~---d 503 (980)
...||.|||.++... .-.+.++| |+++|||. +++|++|+. |-++++.. -+||.|-. ..|...+ .
T Consensus 139 p~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd-~~~P~~L~~-~~~~~~~~-----~~iQ~pV~~~~~~~~~~l~~ 211 (703)
T PRK15489 139 PTCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSED-VLHPLELKY-FNYLLPRK-----DLVQLPVLSLERKWYEWVAG 211 (703)
T ss_pred CCCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCC-CCChhHHHH-HHhhcCCc-----ceeeeeeccCCCccccHHHH
Confidence 356999999988642 11234555 99999999 579999976 46665432 36998832 1221111 2
Q ss_pred hhhhhhhhhhhhhccccccCCCccc-cccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHhh
Q 002020 504 RYANRNIVFFDVNMKGLDGIQGPMY-VGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLSEAYR 582 (980)
Q Consensus 504 r~~n~~~vFfdi~~~gldg~qgp~y-vGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (980)
-|+.+....|+..|+++..+.|++. .|||++|||.||-
T Consensus 212 ~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~----------------------------------------- 250 (703)
T PRK15489 212 TYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALL----------------------------------------- 250 (703)
T ss_pred HHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHH-----------------------------------------
Confidence 3777888888888999988888765 4578888888771
Q ss_pred hhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccccccccc
Q 002020 583 DAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKT 662 (980)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T 662 (980)
.+.+.||..
T Consensus 251 -----------------------------------------------~l~~~gg~~------------------------ 259 (703)
T PRK15489 251 -----------------------------------------------ALMKERGNQ------------------------ 259 (703)
T ss_pred -----------------------------------------------HHHHhcCCC------------------------
Confidence 012345432
Q ss_pred ccccccccccccccchHHHHHHHHhCCcEEEEecC---------------------CCCceecccCCCHHHHHHHHHHhh
Q 002020 663 EWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMP---------------------LRPAFKGSAPINLSDRLHQVLRWA 721 (980)
Q Consensus 663 ~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p---------------------~ra~~~G~aP~tl~~~l~QR~RWa 721 (980)
+|..+++|||+++|+||+.+|||+.|+.- .....++..|.|+.+.++||.||.
T Consensus 260 ------~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~ 333 (703)
T PRK15489 260 ------PFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWV 333 (703)
T ss_pred ------CCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHHHH
Confidence 47789999999999999999999999321 013567889999999999999999
Q ss_pred chhH-HHHH
Q 002020 722 LGSV-EIFL 729 (980)
Q Consensus 722 ~G~l-Qil~ 729 (980)
.|-. |-..
T Consensus 334 ~Gi~~q~~~ 342 (703)
T PRK15489 334 LGIAFQGWE 342 (703)
T ss_pred hHHHHhhHH
Confidence 9987 7753
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.82 E-value=4.6e-19 Score=183.23 Aligned_cols=227 Identities=16% Similarity=0.179 Sum_probs=154.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccccccc
Q 002020 255 FFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEFYFSQ 334 (980)
Q Consensus 255 vfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~YF~~ 334 (980)
|+|||+| |+ ..+.+||.|+++++||.+++.++|.|||+++-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 76 78999999999999999899999999998763322111
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCCCcC
Q 002020 335 KIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGACDIEG 414 (980)
Q Consensus 335 ~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~d~~g 414 (980)
+.. +
T Consensus 48 -----------------------~~~----------~------------------------------------------- 51 (229)
T cd04192 48 -----------------------FAA----------A------------------------------------------- 51 (229)
T ss_pred -----------------------HHH----------h-------------------------------------------
Confidence 000 0
Q ss_pred CCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCc
Q 002020 415 NELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQ 494 (980)
Q Consensus 415 ~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ 494 (980)
...|++.++.++. + ....|+.|+|.++.. ++++||+++|+|.+ ..|++|.+++..|.++. .+.|+.++
T Consensus 52 ~~~~~v~~~~~~~-~--~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~~----~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR-V--SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKEQ----IGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC-c--ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcCC----CcEEeeee
Confidence 0012355554443 1 235789999999984 67999999999996 58999999999776654 67888888
Q ss_pred cccCCCcc-chhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 495 RFDGIDKS-DRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKP 573 (980)
Q Consensus 495 ~F~n~d~~-dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (980)
.+...+.. ..+..-...+......+..+++.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 153 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPF---------------------------------------------- 153 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcc----------------------------------------------
Confidence 87622211 1111100000001111111111100
Q ss_pred CcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHh
Q 002020 574 SKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHV 653 (980)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v 653 (980)
...|++.+||++++.++||+++
T Consensus 154 --------------------------------------------~~~g~~~~~rr~~~~~~ggf~~-------------- 175 (229)
T cd04192 154 --------------------------------------------MCNGANMAYRKEAFFEVGGFEG-------------- 175 (229)
T ss_pred --------------------------------------------ccccceEEEEHHHHHHhcCCcc--------------
Confidence 0124455677888889999864
Q ss_pred cccccccccccccccccccccccchHHHHHHHHhCCc-EEEEecCCCCceecccCCCHHHHHHHHHHhhch
Q 002020 654 ISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGW-RSLYCMPLRPAFKGSAPINLSDRLHQVLRWALG 723 (980)
Q Consensus 654 ~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~Gw-rsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G 723 (980)
.....+||.++.++++.+|| ++.|+.......+...|.+++++++||+||++|
T Consensus 176 -----------------~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 176 -----------------NDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred -----------------ccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 12467899999999999999 998874323677899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.81 E-value=2.6e-19 Score=184.16 Aligned_cols=195 Identities=17% Similarity=0.198 Sum_probs=144.3
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEF 330 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~ 330 (980)
|.|.|+||++| |.. .+.+++-|+++++||. +.++|.|||+++-|.+.+.+
T Consensus 1 p~vsviip~~n---~~~-~l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~------------------------ 50 (196)
T cd02520 1 PGVSILKPLCG---VDP-NLYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK------------------------ 50 (196)
T ss_pred CCeEEEEecCC---CCc-cHHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH------------------------
Confidence 67999999999 765 4689999999999996 78899999998733332211
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCC
Q 002020 331 YFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGAC 410 (980)
Q Consensus 331 YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~ 410 (980)
+.++ ||.+
T Consensus 51 -------------------------------------~~~~------------------------~~~~----------- 58 (196)
T cd02520 51 -------------------------------------LIAK------------------------YPNV----------- 58 (196)
T ss_pred -------------------------------------HHHH------------------------CCCC-----------
Confidence 1000 1100
Q ss_pred CCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEE
Q 002020 411 DIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYV 490 (980)
Q Consensus 411 d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~V 490 (980)
++.++..+++.| ...|++|+|++++. ++++|++++|+|.. ..|++|.+++..+.+|+ ++.|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~~----~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDPG----VGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCCC----CCeE
Confidence 133444433222 23689999999984 68999999999996 58999999999888876 7777
Q ss_pred ccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 491 QFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPS 570 (980)
Q Consensus 491 Q~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (980)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 754 33455566655554
Q ss_pred CCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHH
Q 002020 571 KKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEA 650 (980)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea 650 (980)
.++||++.
T Consensus 137 -------------------------------------------------------------~~~ggf~~----------- 144 (196)
T cd02520 137 -------------------------------------------------------------DAIGGFEA----------- 144 (196)
T ss_pred -------------------------------------------------------------HhccChHH-----------
Confidence 46777642
Q ss_pred HHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhch
Q 002020 651 IHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALG 723 (980)
Q Consensus 651 ~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G 723 (980)
....+.||+++++++..+||++.|++. +.++...|.+++++++||.||++.
T Consensus 145 --------------------~~~~~~eD~~l~~rl~~~G~~i~~~~~--~~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 145 --------------------FADYLAEDYFLGKLIWRLGYRVVLSPY--VVMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred --------------------HhHHHHHHHHHHHHHHHcCCeEEEcch--heeccCCcccHHHHHHHHHHHhcc
Confidence 113568999999999999999999954 688899999999999999999863
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.78 E-value=8.1e-18 Score=175.84 Aligned_cols=59 Identities=25% Similarity=0.169 Sum_probs=51.1
Q ss_pred CCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCCC
Q 002020 433 HHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGID 500 (980)
Q Consensus 433 hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d 500 (980)
+..|++|+|.+++. +.++||+++|+|.+ +.|++|++++..|.||+ ++.|+..+.+.+.+
T Consensus 62 ~~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~----v~~v~~~~~~~~~~ 120 (235)
T cd06434 62 HPGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDPK----VGGVGTNQRILRPR 120 (235)
T ss_pred CCChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCCC----EeEEcCceEeecCc
Confidence 34599999999984 58999999999996 58999999999888876 99999998887764
No 33
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.76 E-value=4.9e-15 Score=168.34 Aligned_cols=226 Identities=19% Similarity=0.346 Sum_probs=158.5
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCceEEEccCccccC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRDVCYVQFPQRFDG 498 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~v~~VQ~PQ~F~n 498 (980)
+.|-.|.+ |...||||+...+|--| +..+|+++||||.++ ..+.+-+.+..| .+|+ .|.+||-..--|
T Consensus 214 ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSvM-tgd~lvrLv~~ME~~P~----aGlIQt~P~~~g 282 (736)
T COG2943 214 IFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSVM-TGDCLVRLVRLMEANPD----AGLIQTSPKASG 282 (736)
T ss_pred eeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeeccccc-CchHHHHHHHHHhhCCC----CceeecchhhcC
Confidence 67777766 56679999999998665 678999999999976 789999999887 6787 889999655433
Q ss_pred CCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchh
Q 002020 499 IDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLS 578 (980)
Q Consensus 499 ~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (980)
..|+|-++.|-+ ..+-||++ ++|-- ||. +
T Consensus 283 ---------g~TL~AR~qQFa-trvYGpl~-~~GLa------------------------wW~------~---------- 311 (736)
T COG2943 283 ---------GDTLYARCQQFA-TRVYGPLF-TAGLA------------------------WWQ------L---------- 311 (736)
T ss_pred ---------cchHHHHHHHHH-HHHhchHH-hhhhH------------------------HHh------c----------
Confidence 345555554433 22333332 12110 110 0
Q ss_pred hHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccccc
Q 002020 579 EAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGY 658 (980)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Y 658 (980)
.-.+.+|++.++|..+++|.-|.|+-
T Consensus 312 ------------------------------------~Es~yWGHNAIIRt~aF~~hcgLp~L------------------ 337 (736)
T COG2943 312 ------------------------------------GESHYWGHNAIIRTKAFIEHCGLPPL------------------ 337 (736)
T ss_pred ------------------------------------cccccccccceeechhhHHhcCCCCC------------------
Confidence 00235688888888888777666541
Q ss_pred ccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhHHHHHhhcCccccc
Q 002020 659 EEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYG 738 (980)
Q Consensus 659 e~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQil~sk~~Pl~~~ 738 (980)
..+...|. ..++.|+..+-.|.+.||.+.-. ++-.-++++.|.|+.+++++-+||++|++|.+. ++.
T Consensus 338 pG~~pFgG------~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRRWC~GNLqh~r-----l~~- 404 (736)
T COG2943 338 PGRGPFGG------HILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRRWCHGNLQHFR-----LFL- 404 (736)
T ss_pred CCCCCCCc------cccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhHhhhcchhhce-----eec-
Confidence 11222332 46789999999999999976655 344678999999999999999999999998863 331
Q ss_pred cCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 002020 739 FGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICL 776 (980)
Q Consensus 739 ~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~L 776 (980)
.+| |.+..|+.++.+++.|+++...++++++.++..
T Consensus 405 -~~G-lHwvsR~h~~tGVmsYlsaPlWfl~ll~g~al~ 440 (736)
T COG2943 405 -VKG-LHWVSRAHFLTGVMSYLSAPLWFLFLLLGTALQ 440 (736)
T ss_pred -cCC-ccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 245 999999999999888877655555555444433
No 34
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.75 E-value=7.7e-17 Score=170.67 Aligned_cols=224 Identities=19% Similarity=0.285 Sum_probs=154.6
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
....|.|.|+|||+| |+ ..+..++.|+++++||.+++.++|+|||+++-|.+.+
T Consensus 25 ~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~---------------------- 78 (251)
T cd06439 25 PAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIA---------------------- 78 (251)
T ss_pred CCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHH----------------------
Confidence 456899999999999 76 6789999999999999988999999999986322211
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
+++.+
T Consensus 79 -----------------------------~~~~~---------------------------------------------- 83 (251)
T cd06439 79 -----------------------------REYAD---------------------------------------------- 83 (251)
T ss_pred -----------------------------HHHhh----------------------------------------------
Confidence 11110
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCc
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRD 486 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~ 486 (980)
. ++.++..+++ ..|++|+|.+++. +++++|+.+|+|.++ .+++|++.+..|.+++
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~~~-~~~~l~~l~~~~~~~~---- 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANALL-DPDALRLLVRHFADPS---- 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEccccCc-CHHHHHHHHHHhcCCC----
Confidence 0 1344444432 3499999999984 578999999999975 6999999999987765
Q ss_pred eEEEccCccccCCCccchhhhhhhhhhhhh--ccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCC
Q 002020 487 VCYVQFPQRFDGIDKSDRYANRNIVFFDVN--MKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCC 564 (980)
Q Consensus 487 v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~--~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~ 564 (980)
++.|+......+.+. .......++... ........+-++.
T Consensus 139 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 180 (251)
T cd06439 139 VGAVSGELVIVDGGG---SGSGEGLYWKYENWLKRAESRLGSTVG----------------------------------- 180 (251)
T ss_pred ccEEEeEEEecCCcc---cchhHHHHHHHHHHHHHHHHhcCCeee-----------------------------------
Confidence 788888776554332 100001111100 0000000000000
Q ss_pred CCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCch
Q 002020 565 SCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPS 644 (980)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~ 644 (980)
-.|....+|++++. |++.
T Consensus 181 ------------------------------------------------------~~g~~~~~rr~~~~---~~~~----- 198 (251)
T cd06439 181 ------------------------------------------------------ANGAIYAIRRELFR---PLPA----- 198 (251)
T ss_pred ------------------------------------------------------ecchHHHhHHHHhc---CCCc-----
Confidence 12333445555554 3332
Q ss_pred hHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchh
Q 002020 645 TLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGS 724 (980)
Q Consensus 645 ~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~ 724 (980)
....||+++++++..+||+++|.+. +..+...|.+..++++|+.||+.|+
T Consensus 199 ----------------------------~~~~eD~~l~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~r~~~g~ 248 (251)
T cd06439 199 ----------------------------DTINDDFVLPLRIARQGYRVVYEPD--AVAYEEVAEDGSEEFRRRVRIAAGN 248 (251)
T ss_pred ----------------------------ccchhHHHHHHHHHHcCCeEEeccc--cEEEEeCcccHHHHHHHHHHHHhcc
Confidence 4567999999999999999999954 6889999999999999999999999
Q ss_pred HH
Q 002020 725 VE 726 (980)
Q Consensus 725 lQ 726 (980)
+|
T Consensus 249 ~~ 250 (251)
T cd06439 249 LQ 250 (251)
T ss_pred cc
Confidence 87
No 35
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.74 E-value=1.5e-15 Score=173.38 Aligned_cols=243 Identities=19% Similarity=0.165 Sum_probs=153.0
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
+...|+|.|+||++| |. ..+.+++-|++++|||. ++.++|.|||+++-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 457899999999999 86 67899999999999995 589999999998743332211
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
+.+ + ||.
T Consensus 91 -------------------------------~~~----------~------------------------~~~-------- 97 (384)
T TIGR03469 91 -------------------------------AAR----------A------------------------YGR-------- 97 (384)
T ss_pred -------------------------------HHH----------h------------------------cCC--------
Confidence 000 0 000
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccC-CCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCC
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLT-NAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGR 485 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~t-ng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~ 485 (980)
-+++.++..+.+|. ....|+.|+|.+++.+.... ++++++.+|+|.. .+|++|++++..+.++.
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~~--- 162 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAEG--- 162 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhCC---
Confidence 01244444333221 34579999999998642111 2899999999996 58999999999887754
Q ss_pred ceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCC
Q 002020 486 DVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCS 565 (980)
Q Consensus 486 ~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~ 565 (980)
+++|..+.++... ..+ .+ ...++.... + ..+|.+.-. ..+..
T Consensus 163 -~~~vs~~~~~~~~---~~~-~~------~~~~~~~~~-----------~--~~~~~~~~~---~~~~~----------- 204 (384)
T TIGR03469 163 -LDLVSLMVRLRCE---SFW-EK------LLIPAFVFF-----------F--QKLYPFRWV---NDPRR----------- 204 (384)
T ss_pred -CCEEEecccccCC---CHH-HH------HHHHHHHHH-----------H--HHhcchhhh---cCCCc-----------
Confidence 4555544333211 111 00 000000000 0 001100000 00000
Q ss_pred CCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchh
Q 002020 566 CCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPST 645 (980)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~ 645 (980)
...--+|.+..+|+++++++||+++
T Consensus 205 -------------------------------------------------~~~~~~G~~~lirr~~~~~vGGf~~------ 229 (384)
T TIGR03469 205 -------------------------------------------------RTAAAAGGCILIRREALERIGGIAA------ 229 (384)
T ss_pred -------------------------------------------------cceeecceEEEEEHHHHHHcCCHHH------
Confidence 0001246777889999999999853
Q ss_pred HHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhh
Q 002020 646 LIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWA 721 (980)
Q Consensus 646 ~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa 721 (980)
.+..+.||++++.++.++|+++.+.... .......-+++.+.++|+.||+
T Consensus 230 -------------------------~~~~~~ED~~L~~r~~~~G~~v~~~~~~-~~~s~r~~~~~~~~~~~~~r~~ 279 (384)
T TIGR03469 230 -------------------------IRGALIDDCTLAAAVKRSGGRIWLGLAA-RTRSLRPYDGLGEIWRMIARTA 279 (384)
T ss_pred -------------------------HhhCcccHHHHHHHHHHcCCcEEEEecC-ceEEEEecCCHHHHHHHHHHhH
Confidence 1246789999999999999999998643 3444456679999999999995
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.67 E-value=5.2e-15 Score=154.97 Aligned_cols=76 Identities=12% Similarity=0.102 Sum_probs=63.9
Q ss_pred CchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCC
Q 002020 621 GLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRP 700 (980)
Q Consensus 621 G~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra 700 (980)
|...+++++++.+.||+++. ....||.+++++++++|+++.|++. +
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~--------------------------------~~~~eD~~l~~r~~~~G~~~~~~~~--~ 203 (249)
T cd02525 158 VHHGAYRREVFEKVGGFDES--------------------------------LVRNEDAELNYRLRKAGYKIWLSPD--I 203 (249)
T ss_pred cccceEEHHHHHHhCCCCcc--------------------------------cCccchhHHHHHHHHcCcEEEEcCC--e
Confidence 44456788888999998641 1346999999999999999999954 5
Q ss_pred ceecccCCCHHHHHHHHHHhhchhHHHHHh
Q 002020 701 AFKGSAPINLSDRLHQVLRWALGSVEIFLS 730 (980)
Q Consensus 701 ~~~G~aP~tl~~~l~QR~RWa~G~lQil~s 730 (980)
...-..+.+++.+++|+.||+.|..|.+..
T Consensus 204 ~~~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 204 RVYYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred EEEEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 777888999999999999999999999864
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.65 E-value=1.1e-15 Score=156.38 Aligned_cols=143 Identities=26% Similarity=0.350 Sum_probs=103.9
Q ss_pred EEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCCCccchhhhhhhhhhhhhccccccCCCccccccccc
Q 002020 455 YILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGIDKSDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCM 534 (980)
Q Consensus 455 ~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~ 534 (980)
+|+++|+|.. +.++.|++++.+|.||+ ++.||+|+.+++ .++...+.+..+|+... +++..+.
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~~----~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~--------- 63 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDPK----VDAVQGPIIFRN--RGSLLTRLQDFEYAISH-GLSRLSQ--------- 63 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCCC----ceEEEccEEecC--CCChhheeehhhhhhhh-hhhHHHH---------
Confidence 5899999996 57999999999988886 999999999863 33444444454442211 1100000
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhh
Q 002020 535 FNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQM 614 (980)
Q Consensus 535 ~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (980)
+..|
T Consensus 64 ----~~~~------------------------------------------------------------------------ 67 (193)
T PF13632_consen 64 ----SSLG------------------------------------------------------------------------ 67 (193)
T ss_pred ----HhcC------------------------------------------------------------------------
Confidence 0000
Q ss_pred hhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEE
Q 002020 615 SFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLY 694 (980)
Q Consensus 615 ~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY 694 (980)
...--.|+...+|+++++++||++. ..+++||+++++++.++||++.|
T Consensus 68 ~~~~~~G~~~~~r~~~l~~vg~~~~--------------------------------~~~~~ED~~l~~~l~~~G~~~~~ 115 (193)
T PF13632_consen 68 RPLFLSGSGMLFRREALREVGGFDD--------------------------------PFSIGEDMDLGFRLRRAGYRIVY 115 (193)
T ss_pred CCccccCcceeeeHHHHHHhCcccc--------------------------------cccccchHHHHHHHHHCCCEEEE
Confidence 0000125666777777788888751 36899999999999999999999
Q ss_pred ecCCCCceecccCCCHHHHHHHHHHhhchh
Q 002020 695 CMPLRPAFKGSAPINLSDRLHQVLRWALGS 724 (980)
Q Consensus 695 ~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~ 724 (980)
++. +.++.++|.|+.++++||+||..|.
T Consensus 116 ~~~--~~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 116 VPD--AIVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred ecc--cceeeeCCCCHHHHHHHHHHHHhhh
Confidence 954 5789999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.53 E-value=8.8e-14 Score=143.17 Aligned_cols=114 Identities=17% Similarity=0.063 Sum_probs=79.3
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhcc-------ccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEcc
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSA-------VLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQF 492 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa-------~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~ 492 (980)
+.++.++... .+..|++|+|++++.+. .-..+++|+++|+|.. ..|++|+++..+|.||+ ++.||.
T Consensus 52 v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~~----v~~v~~ 124 (191)
T cd06436 52 VHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDPR----VAGTQS 124 (191)
T ss_pred EEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCCc----eEEEee
Confidence 6666654311 23469999999998531 0013589999999996 58999999888998887 899999
Q ss_pred CccccCCCccc--h-hhhhhhhhhhhhccccccCCCccccccccchhhhhh
Q 002020 493 PQRFDGIDKSD--R-YANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQAL 540 (980)
Q Consensus 493 PQ~F~n~d~~d--r-~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~AL 540 (980)
+.++.|.+.+- + +..+...++.+++.++.......+.|+|++|||++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 99998865442 2 223334444556666655555556788888887776
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.39 E-value=3.5e-12 Score=129.80 Aligned_cols=62 Identities=16% Similarity=0.051 Sum_probs=46.9
Q ss_pred CCCchhhHHHHHHhcc-ccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCCC
Q 002020 433 HHKKAGAENALVRVSA-VLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGID 500 (980)
Q Consensus 433 hh~KAGalNallrvsa-~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d 500 (980)
+..|++|+|++++... .-+++++++++|+|.. +.|++|++++..|.+. ...||......+.+
T Consensus 61 ~~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~ 123 (183)
T cd06438 61 RRGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPD 123 (183)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCc
Confidence 4469999999987531 1247999999999996 5799999999988653 34688876665543
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.37 E-value=1.9e-11 Score=124.74 Aligned_cols=121 Identities=17% Similarity=0.264 Sum_probs=87.4
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEF 330 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~ 330 (980)
|.|.|+|||+| |.+..+.+|+.|+++..||. +.++|+|||.++-+.+.+
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~-------------------------- 49 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRV-------------------------- 49 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHH--------------------------
Confidence 67999999998 76678899999999999985 678999999875221111
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCC
Q 002020 331 YFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGAC 410 (980)
Q Consensus 331 YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~ 410 (980)
.++|.+ +
T Consensus 50 ------------------------~~~~~~----------~--------------------------------------- 56 (202)
T cd04184 50 ------------------------LKKYAA----------Q--------------------------------------- 56 (202)
T ss_pred ------------------------HHHHHh----------c---------------------------------------
Confidence 111110 0
Q ss_pred CCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCceEE
Q 002020 411 DIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRDVCY 489 (980)
Q Consensus 411 d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~v~~ 489 (980)
.+++.++..+. ...++.|+|.+++. +.++||+.+|+|.+ +.|++|.+++..+ .+|+ +++
T Consensus 57 ------~~~~~~~~~~~-----~~g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~~----~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREE-----NGGISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHPD----ADL 116 (202)
T ss_pred ------CCCEEEEEccc-----CCCHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCCC----CCE
Confidence 01244444443 23579999999984 57899999999995 5899999999887 6776 667
Q ss_pred EccCcc
Q 002020 490 VQFPQR 495 (980)
Q Consensus 490 VQ~PQ~ 495 (980)
|+....
T Consensus 117 v~~~~~ 122 (202)
T cd04184 117 IYSDED 122 (202)
T ss_pred EEccHH
Confidence 755444
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.30 E-value=6.7e-11 Score=120.85 Aligned_cols=65 Identities=17% Similarity=0.126 Sum_probs=50.3
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCCCCCceEEEccCccccC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQVGRDVCYVQFPQRFDG 498 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~~g~~v~~VQ~PQ~F~n 498 (980)
+.++.+++. ..+++|+|.+++. +.|+||+.+|+|.+ ..|++|.+++.+|. +|+ +++|.......+
T Consensus 57 i~~i~~~~n-----~G~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKN-----RGLGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNPE----IDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcc-----ccHHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCCC----eEEEcccEEEEC
Confidence 556666553 3489999999984 68999999999996 57999999999884 555 778877655443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.28 E-value=1.9e-11 Score=125.84 Aligned_cols=157 Identities=25% Similarity=0.324 Sum_probs=112.3
Q ss_pred CCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCCCccchhhhhhhhh
Q 002020 433 HHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGIDKSDRYANRNIVF 512 (980)
Q Consensus 433 hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d~~dr~~n~~~vF 512 (980)
-+.|..||..+++. ...+++|+++|+|+.+ +|+.|++++..|.||+ ++.|..+.++.+.+. -.+.-...|
T Consensus 15 ~N~Kv~nL~~~~~~---~a~~d~~~~~DsDi~v-~p~~L~~lv~~l~~p~----vglVt~~~~~~~~~~--~~~~l~~~~ 84 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA---GAKYDYLVISDSDIRV-PPDYLRELVAPLADPG----VGLVTGLPRGVPARG--FWSRLEAAF 84 (175)
T ss_pred CChHHHHHHHHHHh---hCCCCEEEEECCCeeE-CHHHHHHHHHHHhCCC----CcEEEecccccCCcC--HHHHHHHHH
Confidence 47799999999884 1689999999999976 7999999999999997 889988777554442 111111122
Q ss_pred hhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHH
Q 002020 513 FDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAA 592 (980)
Q Consensus 513 fdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (980)
+. ..++. . .++-|
T Consensus 85 ~~-~~~~~------~----------~a~~~-------------------------------------------------- 97 (175)
T PF13506_consen 85 FN-FLPGV------L----------QALGG-------------------------------------------------- 97 (175)
T ss_pred Hh-HHHHH------H----------HHhcC--------------------------------------------------
Confidence 21 11110 0 00000
Q ss_pred hhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhccccccccccccccccccc
Q 002020 593 IFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIY 672 (980)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y 672 (980)
..--+|.+.++|+++++++||+.. ..
T Consensus 98 -----------------------~~~~~G~~m~~rr~~L~~~GG~~~-------------------------------l~ 123 (175)
T PF13506_consen 98 -----------------------APFAWGGSMAFRREALEEIGGFEA-------------------------------LA 123 (175)
T ss_pred -----------------------CCceecceeeeEHHHHHHcccHHH-------------------------------Hh
Confidence 001247778899999999999743 12
Q ss_pred ccccchHHHHHHHHhCCcEEEEecCCCCceecccC----CCHHHHHHHHHHhhc
Q 002020 673 GSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAP----INLSDRLHQVLRWAL 722 (980)
Q Consensus 673 ~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP----~tl~~~l~QR~RWa~ 722 (980)
+.++||+.+|-+++.+|||+++.+. ++.....| .++.++++++.||++
T Consensus 124 ~~ladD~~l~~~~~~~G~~v~~~~~--~v~~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 124 DYLADDYALGRRLRARGYRVVLSPY--PVVQTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred hhhhHHHHHHHHHHHCCCeEEEcch--heeecccCccccccHHHHHHHHHhhcC
Confidence 5889999999999999999999853 45556666 489999999999985
No 43
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.19 E-value=7.8e-12 Score=101.77 Aligned_cols=48 Identities=31% Similarity=0.951 Sum_probs=30.5
Q ss_pred ccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 9 CNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 9 C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
|.+|.+++ |++|..|.|| ||+|.|||.||.+.++++++.||+||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 9999999999 999999999999999888999999999995
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.14 E-value=9.8e-10 Score=110.64 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=41.9
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHh-hhcCCCCCCceEEEccCcccc
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMC-FMMDPQVGRDVCYVQFPQRFD 497 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amc-ff~Dp~~g~~v~~VQ~PQ~F~ 497 (980)
.+++|+|.+++. ++++||+.+|+|..+ .++.+.+.+. +..+|+ +.+|.....+.
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~~-~~~~~~~~~~~~~~~~~----~~~v~g~~~~~ 116 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDTL-LPGALLAVVAAFAEHPE----VDVVYGDVLLV 116 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCccc-CchHHHHHHHHHHhCCC----ccEEEeeeEEE
Confidence 489999999984 689999999999965 7899999984 446665 56666655443
No 45
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.13 E-value=9.9e-09 Score=121.29 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=46.6
Q ss_pred cccchHHHHHHHHhC--CcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhHHHH
Q 002020 674 SVTEDILTGFKMHCR--GWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIF 728 (980)
Q Consensus 674 sITED~~tg~rL~~~--GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~lQil 728 (980)
.+.||-.++..|.++ |||..|++. +.++..+|+|++.+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~--A~a~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPS--AVAYTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEccc--ccccccCCccHHHHHHHhhhccchhHhhH
Confidence 578999888777776 899999953 88999999999999999999999998554
No 46
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.13 E-value=2.3e-09 Score=110.94 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=34.5
Q ss_pred eEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcc
Q 002020 253 VDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAM 298 (980)
Q Consensus 253 VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ 298 (980)
|.|+||++| |+. .+.+++.|+++..|+ ...++|+|||+.+
T Consensus 1 vsvii~~~n---~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPTLN---EAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEccC---cHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 579999999 764 779999999999994 5778999999875
No 47
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.09 E-value=1.5e-09 Score=111.14 Aligned_cols=56 Identities=13% Similarity=0.088 Sum_probs=44.6
Q ss_pred CCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhh-hcCCCCCCceEEEccCcccc
Q 002020 433 HHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCF-MMDPQVGRDVCYVQFPQRFD 497 (980)
Q Consensus 433 hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcf-f~Dp~~g~~v~~VQ~PQ~F~ 497 (980)
.+.+++|+|.+++. ++|+||+++|+|.++ .|+.|.+.+.. +.+|. .+++.....+.
T Consensus 64 ~~G~~~~~n~g~~~----~~g~~v~~ld~Dd~~-~~~~l~~~~~~~~~~~~----~~~~~~~~~~~ 120 (214)
T cd04196 64 NLGVARNFESLLQA----ADGDYVFFCDQDDIW-LPDKLERLLKAFLKDDK----PLLVYSDLELV 120 (214)
T ss_pred CccHHHHHHHHHHh----CCCCEEEEECCCccc-ChhHHHHHHHHHhcCCC----ceEEecCcEEE
Confidence 34589999999874 689999999999964 79999999997 45554 67777765543
No 48
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.09 E-value=4e-09 Score=116.11 Aligned_cols=109 Identities=18% Similarity=0.160 Sum_probs=81.8
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccccccc
Q 002020 255 FFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEFYFSQ 334 (980)
Q Consensus 255 vfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~YF~~ 334 (980)
|+|||+| |++..+.+||.|+++..||.....++|.|||+++-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7999999 887999999999999999876678999999998733332211
Q ss_pred ccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCCCCcC
Q 002020 335 KIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGACDIEG 414 (980)
Q Consensus 335 ~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~d~~g 414 (980)
.+.+
T Consensus 51 ----------------------~~~~------------------------------------------------------ 54 (299)
T cd02510 51 ----------------------EYYK------------------------------------------------------ 54 (299)
T ss_pred ----------------------HHHh------------------------------------------------------
Confidence 0000
Q ss_pred CCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcC
Q 002020 415 NELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMD 480 (980)
Q Consensus 415 ~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~D 480 (980)
...|++.++..+++ ..++.|.|.+++. +.|+||+.+|+|..+ ++++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~~~-~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHCEV-NVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCccc-CccHHHHHHHHHHh
Confidence 01133566655442 3488999999984 689999999999975 89999999987754
No 49
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.07 E-value=3.7e-09 Score=106.18 Aligned_cols=42 Identities=17% Similarity=0.356 Sum_probs=36.4
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCC
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQ 482 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~ 482 (980)
.|++|+|.+++. ++|+||+.+|+|.. +.|++|++.+-++ ++.
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~~ 107 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EPG 107 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CCC
Confidence 689999999984 68999999999995 6899999999887 443
No 50
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.05 E-value=4.1e-09 Score=102.98 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=40.4
Q ss_pred CCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCCCCCceEEEccC
Q 002020 434 HKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQVGRDVCYVQFP 493 (980)
Q Consensus 434 h~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~~g~~v~~VQ~P 493 (980)
..+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+. +|+ ++.|+..
T Consensus 60 ~g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~~----~~~~~~~ 111 (166)
T cd04186 60 LGFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDPD----VGIVGPK 111 (166)
T ss_pred cChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCCC----ceEEEcc
Confidence 4589999999984 48999999999996 57999999997554 444 6666554
No 51
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.02 E-value=9e-09 Score=109.89 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=45.0
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFP 493 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~P 493 (980)
+.++.+++. ..|++|+|++++. +.|+||+.+|+|.. .+|++|.+++..+.++. ..+|...
T Consensus 70 v~~~~~~~n-----~G~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGK-----LGLGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRETG----ADIVTGT 129 (243)
T ss_pred EEEEecCCC-----CCHHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhcC----CcEEEEc
Confidence 455555442 3489999999984 68999999999996 58999999998886643 4555443
No 52
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.99 E-value=9.6e-09 Score=107.24 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=35.3
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchh
Q 002020 255 FFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLT 300 (980)
Q Consensus 255 vfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~lt 300 (980)
|+||++| ++ ..+..++-|+++++|| +.+.++|.|||+.+-|
T Consensus 1 ViIp~yn---~~-~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVHN---GE-QWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeecC---cH-HHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 6799998 54 7999999999999999 4689999999998743
No 53
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.96 E-value=1.2e-08 Score=105.97 Aligned_cols=60 Identities=12% Similarity=0.062 Sum_probs=45.4
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFP 493 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~P 493 (980)
+.++..+++ ..|++|+|+.++. +.++||+.+|+|.. .+|++|...+..+.+++ ...|..+
T Consensus 55 i~~~~~~~n-----~G~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGK-----RGLGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEGG----ADLVIGS 114 (224)
T ss_pred eEEEecCCC-----CChHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcCC----CCEEEEe
Confidence 344445543 3489999999984 57899999999985 58999999999877655 4455554
No 54
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.95 E-value=9.1e-09 Score=99.54 Aligned_cols=62 Identities=31% Similarity=0.389 Sum_probs=45.8
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHH-hhhcCCCCCCceEEEccCcc
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAM-CFMMDPQVGRDVCYVQFPQR 495 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~am-cff~Dp~~g~~v~~VQ~PQ~ 495 (980)
++++..++. ..|+.|+|.+++. .++++|+++|+|..+ .+++|.+.+ .++.+++ ++.|...+.
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~----~~~~~i~~~D~D~~~-~~~~l~~~~~~~~~~~~----~~~v~~~~~ 117 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRH----AKGDIVVVLDADTIL-EPDALKRLVVPFFADPK----VGAVQGRVR 117 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHh----cCCCEEEEECCCCCc-ChHHHHHHHHHhccCCC----eeeEeeeEE
Confidence 445555443 3499999999985 589999999999965 799999995 4556665 566655444
No 55
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.93 E-value=8.9e-09 Score=107.95 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=37.3
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHH
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAM 475 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~am 475 (980)
+.++..++.. .+|+|+|.+++.+.- .+++||+.+|+|.++ +|++|.++.
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~~-~~~~l~~l~ 97 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSVP-PPDMVEKLL 97 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCCc-CHhHHHHHH
Confidence 5666665533 399999999985321 256999999999975 799999995
No 56
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.92 E-value=3.2e-08 Score=101.59 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=43.8
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEE
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYV 490 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~V 490 (980)
+.|+.-++. +..+.++|.++...- ...++|++.+|+|.+ +.|++|++++..+.+|+ ++.|
T Consensus 53 i~~~~~~~n-----~g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~~----~~~~ 112 (202)
T cd04185 53 IVYLRLPEN-----LGGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKDN----PQFL 112 (202)
T ss_pred eEEEECccc-----cchhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcCC----ceEe
Confidence 445554442 346888888876432 357999999999996 57999999999887776 5555
No 57
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.85 E-value=3.6e-09 Score=102.56 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=73.6
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGI 499 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~ 499 (980)
+.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.++ .+++|.+.+.++.++. ..+.+...+....+.
T Consensus 55 i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~~-~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~ 122 (169)
T PF00535_consen 55 IRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDII-SPDWLEELVEALEKNP--PDVVIGSVIYIDDDN 122 (169)
T ss_dssp EEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEEE--TTHHHHHHHHHHHCT--TEEEEEEEEEEECTT
T ss_pred cccccccc----cc-cccccccccccc----cceeEEEEeCCCceE-cHHHHHHHHHHHHhCC--CcEEEEEEEEecCCc
Confidence 88999886 33 699999999984 688999999999975 6789999999998743 124333333333332
Q ss_pred Cccchhh--hhhhhhhhhhccccccCCCccccccccchhhhhhc
Q 002020 500 DKSDRYA--NRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALY 541 (980)
Q Consensus 500 d~~dr~~--n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALy 541 (980)
....... .....++............+.++|.++++||++|-
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~ 166 (169)
T PF00535_consen 123 RYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFE 166 (169)
T ss_dssp ETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHH
T ss_pred cccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHH
Confidence 2222111 11233444445556667788999999999999983
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.71 E-value=2.2e-07 Score=96.44 Aligned_cols=52 Identities=17% Similarity=0.057 Sum_probs=40.8
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCcc
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQR 495 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~ 495 (980)
.|++|+|.+++. +.++||+.+|+|.. ..|+++.+.+..+.++. ...|.....
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~~----~~~v~g~r~ 120 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTSG----YDIAIGSRA 120 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhccC----CcEEEEEee
Confidence 389999999984 67899999999996 58999999999866543 344555433
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.70 E-value=4.6e-07 Score=102.18 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=38.7
Q ss_pred CCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcc
Q 002020 249 ELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAM 298 (980)
Q Consensus 249 ~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ 298 (980)
..|.|.|+||+|| ++ ..+.+++.|++++.|+. +.++|.|||+++
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD 47 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWTA--LEIIIVNDGSTD 47 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCCC--eEEEEEeCCCCc
Confidence 3588999999999 54 68899999999999974 788999999987
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.62 E-value=3.4e-07 Score=91.99 Aligned_cols=65 Identities=12% Similarity=0.151 Sum_probs=49.3
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDG 498 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n 498 (980)
+.++..+++.| |++|+|.+++. +.+++|+.+|+|-. ..|++|.+.+..+..+. ..+|+.+....+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEGG----ADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhccC----CcEEEEEeecCC
Confidence 45555555443 99999999984 67899999999996 48999999999865543 567777765554
No 61
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.61 E-value=1.1e-06 Score=97.03 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=41.7
Q ss_pred cEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcC
Q 002020 419 RLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMD 480 (980)
Q Consensus 419 ~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~D 480 (980)
++.|+..++. ..++.|+|.++. .++|+||+.+|+|.+. .|+.|.+.+-++..
T Consensus 61 ri~~i~~~~n-----~G~~~a~N~gi~----~a~g~~I~~lDaDD~~-~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDIN-----SGACAVRNQAIM----LAQGEYITGIDDDDEW-TPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCCC-----CCHHHHHHHHHH----HcCCCEEEEECCCCCC-CccHHHHHHHHHHh
Confidence 4777766543 348999999998 4789999999999975 79999998887643
No 62
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.57 E-value=1.4e-06 Score=106.85 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=46.2
Q ss_pred cccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhchhH
Q 002020 674 SVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWALGSV 725 (980)
Q Consensus 674 sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~G~l 725 (980)
+..||-.+..++..+||+.-|+.. +.+..++|+++.+++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~--s~a~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAA--SDAETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeecc--ccccccCcHhHHHHHHHhhhhcccch
Confidence 589999999999999999999964 78899999999999999999999943
No 63
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.56 E-value=1.1e-06 Score=95.94 Aligned_cols=67 Identities=18% Similarity=0.222 Sum_probs=47.7
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccc
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRF 496 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F 496 (980)
+.|+.-++.- ..|||+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+.++..+ +.+++.|. |..+
T Consensus 47 i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 47 IALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred eEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 6666654433 4799999998742 1237899999999996 5799999999887542 12478875 4433
No 64
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.44 E-value=8.8e-06 Score=88.28 Aligned_cols=47 Identities=17% Similarity=0.005 Sum_probs=36.7
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCC-CCCCCcEEEEecCCCcchhh
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALD-YPVDKVSCYVSDDGAAMLTF 301 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~d-YP~~kl~~yvsDDg~~~ltf 301 (980)
|.|.|+|||+| |. ..+..|+.|++++. .+...+.++|.|||+++-|.
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~ 48 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTR 48 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHH
Confidence 57999999999 64 57899999998652 33346889999999987433
No 65
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.40 E-value=1.7e-05 Score=88.30 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=88.8
Q ss_pred CceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCcc
Q 002020 250 LAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPE 329 (980)
Q Consensus 250 lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe 329 (980)
-|.+-+.|.||+ +...+.+.+-++.+.+||.+.+ ++.|+|.++-|.+.+.+.
T Consensus 2 ~~~i~~iiv~yn----~~~~l~~~l~~l~~~~~~~~~i--v~vDn~s~d~~~~~~~~~---------------------- 53 (305)
T COG1216 2 MPKISIIIVTYN----RGEDLVECLASLAAQTYPDDVI--VVVDNGSTDGSLEALKAR---------------------- 53 (305)
T ss_pred CcceEEEEEecC----CHHHHHHHHHHHhcCCCCCcEE--EEccCCCCCCCHHHHHhh----------------------
Confidence 367899999998 4689999999999999998654 488888876333322110
Q ss_pred cccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCC
Q 002020 330 FYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGA 409 (980)
Q Consensus 330 ~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~ 409 (980)
T Consensus 54 -------------------------------------------------------------------------------- 53 (305)
T COG1216 54 -------------------------------------------------------------------------------- 53 (305)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCC-EEEEecCCCCCCchHHHHHHHhhh-cCCCCCCce
Q 002020 410 CDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAP-YILNLDCDHYVNNSKAVREAMCFM-MDPQVGRDV 487 (980)
Q Consensus 410 ~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~-~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~v 487 (980)
..|.+.++.-.+.-|+ ||+.|.+++.. +.++. |++.|+-|. +.++++|.+.+-.+ .+|. +
T Consensus 54 ------~~~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~-~~~~~~l~~ll~~~~~~~~----~ 115 (305)
T COG1216 54 ------FFPNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDT-VVEPDLLEELLKAAEEDPA----A 115 (305)
T ss_pred ------cCCcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCe-eeChhHHHHHHHHHHhCCC----C
Confidence 0233666666666665 89999877743 34544 999999997 46899999999777 4554 7
Q ss_pred EEEccCccccC
Q 002020 488 CYVQFPQRFDG 498 (980)
Q Consensus 488 ~~VQ~PQ~F~n 498 (980)
+.|+.-.+.++
T Consensus 116 ~~~~~~i~~~~ 126 (305)
T COG1216 116 GVVGPLIRNYD 126 (305)
T ss_pred eEeeeeEecCC
Confidence 78877666543
No 66
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.36 E-value=8.8e-06 Score=76.75 Aligned_cols=52 Identities=27% Similarity=0.332 Sum_probs=40.5
Q ss_pred CCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHh-hhcCCCCCCceEEEccC
Q 002020 433 HHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMC-FMMDPQVGRDVCYVQFP 493 (980)
Q Consensus 433 hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amc-ff~Dp~~g~~v~~VQ~P 493 (980)
+..|++++|.++.. .++++++++|+|.+ ..|+++...+- +..+++ ...|+.+
T Consensus 62 ~~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~~----~~~v~~~ 114 (156)
T cd00761 62 NQGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADPE----ADAVGGP 114 (156)
T ss_pred CCChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCCC----ceEEecc
Confidence 34599999999985 47999999999996 57888888744 445554 6777776
No 67
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.34 E-value=3.8e-06 Score=84.89 Aligned_cols=103 Identities=15% Similarity=0.224 Sum_probs=62.1
Q ss_pred EEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCC
Q 002020 420 LVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGI 499 (980)
Q Consensus 420 lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~ 499 (980)
+.++..++ +..|++|+|++++. +.+++|+.+|+|.. ..+++|.+++.. ++++ .++.+.+... .+
T Consensus 57 i~~i~~~~-----n~G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~- 120 (181)
T cd04187 57 VKVIRLSR-----NFGQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEEG--YDVVYGVRKN--RK- 120 (181)
T ss_pred EEEEEecC-----CCCcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhCC--CcEEEEEecC--Cc-
Confidence 55555544 23599999999984 57899999999996 589999999987 4433 2344333222 22
Q ss_pred Cc-cchhhhhhhhhhhhhccccccCCCccccccccchhhhhhc
Q 002020 500 DK-SDRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALY 541 (980)
Q Consensus 500 d~-~dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALy 541 (980)
+. ..++.+. .++. ....+.+..-+...|+..++||+++-
T Consensus 121 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 11 1122111 1111 11222334445666777899999985
No 68
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.29 E-value=8.8e-05 Score=84.09 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=35.3
Q ss_pred CCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcC
Q 002020 434 HKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMD 480 (980)
Q Consensus 434 h~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~D 480 (980)
..|++|+|++++. +.|++|+++|+|.. .+++.+.+.+..+.+
T Consensus 148 ~G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 148 KGKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred CChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 3599999999984 57999999999996 478998888877754
No 69
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.25 E-value=2.7e-05 Score=85.84 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=44.8
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEEccCccccCCCcc
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYVQFPQRFDGIDKS 502 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~VQ~PQ~F~n~d~~ 502 (980)
.+|.|.|.++.. +++++|+.+|+|.+ +.|+++.+++-+...=. ...-+++-.|..|.+.+.+
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~ 136 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGS 136 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhh
Confidence 699999999984 69999999999995 58999999999321100 0113566677777655433
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.07 E-value=2e-05 Score=88.33 Aligned_cols=51 Identities=20% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCCCCCceEEEcc
Q 002020 434 HKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQVGRDVCYVQF 492 (980)
Q Consensus 434 h~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~~g~~v~~VQ~ 492 (980)
..|++|+|..++. ++|++|+.+|+|....+|++|.+.+..+. ||+ +++|..
T Consensus 101 ~Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~----~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDPG----VHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCCC----ceEEEE
Confidence 4599999999984 68999999999985358999999998775 776 667764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.51 E-value=0.0011 Score=75.00 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=35.1
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM 479 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~ 479 (980)
.|++|+|++++. +.|++++.+|||.. .+|+.+.+.+..+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 589999999984 68999999999996 57999999998774
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.23 E-value=0.0052 Score=69.65 Aligned_cols=159 Identities=26% Similarity=0.437 Sum_probs=110.1
Q ss_pred CCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEE-ccCccccCCCccchhhhhhhh
Q 002020 433 HHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYV-QFPQRFDGIDKSDRYANRNIV 511 (980)
Q Consensus 433 hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~V-Q~PQ~F~n~d~~dr~~n~~~v 511 (980)
-+.|--||=-+.|. ...|+|++.|.|-.+ .|+.+....-=||.|+ ++|+| |+|-.++-.-
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~m-~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIFM-KPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCeee-cCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 34577777667774 678999999999987 7999999988888776 68988 7776554221
Q ss_pred hhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHH
Q 002020 512 FFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSCSWCGCCSCCCPSKKPSKDLSEAYRDAKREELDA 591 (980)
Q Consensus 512 Ffdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (980)
||... .-+|-|| .+-|-.|-| +| -|
T Consensus 216 -f~atl-------e~~~fgT--sh~r~yl~~--------------n~--------~~----------------------- 240 (431)
T KOG2547|consen 216 -FDATL-------EQVYFGT--SHPRIYLSG--------------NV--------LG----------------------- 240 (431)
T ss_pred -chhhh-------hheeecc--CCceEEEcc--------------cc--------cc-----------------------
Confidence 11111 0144454 233333311 00 00
Q ss_pred HhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccc
Q 002020 592 AIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWI 671 (980)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~ 671 (980)
+.-.-|-|...|++++.|.||+.. .|
T Consensus 241 ------------------------~~c~tgms~~mrK~~ld~~ggi~~----------------------------f~-- 266 (431)
T KOG2547|consen 241 ------------------------FNCSTGMSSMMRKEALDECGGISA----------------------------FG-- 266 (431)
T ss_pred ------------------------ccccccHHHHHHHHHHHHhccHHH----------------------------HH--
Confidence 000126788899999999999853 12
Q ss_pred cccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHHHhhc
Q 002020 672 YGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVLRWAL 722 (980)
Q Consensus 672 y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~RWa~ 722 (980)
+.+.||+..+-.+..+||++.+..- ++-...+-.+...+..|-.||..
T Consensus 267 -~yLaedyFaaksllSRG~ksaist~--palQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 267 -GYLAEDYFAAKSLLSRGWKSAISTH--PALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred -HHHHHHHHHHHHHHhhhhhhhhccc--chhhhhhhhHHHHHHHHHHHhhh
Confidence 4899999999999999999999863 44456677888899999999984
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.0038 Score=59.89 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=39.2
Q ss_pred CceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcch
Q 002020 250 LAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAML 299 (980)
Q Consensus 250 lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~l 299 (980)
.|.|.|+|||+| |+ .....+|.|++++.|+. ..+.|.|||+++-
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~ 45 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDG 45 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCC
Confidence 578999999999 65 89999999999999997 4579999999973
No 74
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.92 E-value=0.0074 Score=64.19 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=35.5
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCC
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDP 481 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp 481 (980)
..+.+.|.++.. ..+++|+.+|+|..+ .++.+.+...++.++
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~~~-~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADERL-TPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCcCc-CHHHHHHHHHHHhCC
Confidence 478999999973 678999999999965 899999999888654
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.42 E-value=0.0013 Score=72.78 Aligned_cols=54 Identities=24% Similarity=0.721 Sum_probs=45.6
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
.-|..|=+.+-.+ ..-|.+| -|||.|||-||..-|.+=|+-||-|...|+++.+
T Consensus 15 d~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 15 DYCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 3588888886554 3459999 9999999999998899999999999999987654
No 76
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.21 E-value=0.013 Score=49.48 Aligned_cols=49 Identities=27% Similarity=0.843 Sum_probs=39.5
Q ss_pred CCCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCC--CCCCC
Q 002020 2 MQSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLR--CASPY 58 (980)
Q Consensus 2 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~--Ckt~Y 58 (980)
|.-.+..|.+||+.+- +|++.|.|.+|+=|-=|+||+++ +.|-- |++++
T Consensus 1 ~~~~~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 1 MNYEGCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CCccCccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 4556889999999974 47899999999999999999764 45655 77765
No 77
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.07 E-value=0.22 Score=57.09 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=34.5
Q ss_pred EEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcc
Q 002020 254 DFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAM 298 (980)
Q Consensus 254 DvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ 298 (980)
-|+|.|+| - |..+.+|+-|+++..+-.+...+||++||+..
T Consensus 3 PVlv~ayN---R-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN---R-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC---C-HHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888997 4 58999999999998755567889999999875
No 78
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=94.98 E-value=0.38 Score=60.28 Aligned_cols=102 Identities=27% Similarity=0.364 Sum_probs=68.3
Q ss_pred hhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEec
Q 002020 617 EKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCM 696 (980)
Q Consensus 617 ~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~ 696 (980)
.-+||+-.+|-+--...-||++. |... =.++||+..|+....||-++.++.
T Consensus 381 rlHYGHPD~~n~~f~~TRGGvSK----------Ask~-------------------lhLsEDIfaG~n~~lRGG~i~h~e 431 (817)
T PF02364_consen 381 RLHYGHPDVFNRIFMTTRGGVSK----------ASKG-------------------LHLSEDIFAGMNATLRGGRIKHCE 431 (817)
T ss_pred hccCCCchhhhhhheeccCccch----------Hhhc-------------------ccccHHHHHHHHHHhcCCceeehh
Confidence 45678888887777788899865 2211 388999999999999999999984
Q ss_pred CCCCceecccCC-CHHHHHHHHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHh
Q 002020 697 PLRPAFKGSAPI-NLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYIN 754 (980)
Q Consensus 697 p~ra~~~G~aP~-tl~~~l~QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~ 754 (980)
-...|..-+ .+.+-..=-..-+.|+=+..++|-- +.+ +.+|.+..-+++..
T Consensus 432 ---y~qcGKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~---yrL-g~~ld~~R~LSfyy 483 (817)
T PF02364_consen 432 ---YIQCGKGRDVGFNSILNFETKIASGMGEQMLSREY---YRL-GTRLDFFRFLSFYY 483 (817)
T ss_pred ---hhhcccccccCchhhhhhHhHhcCCccchhhhHHH---HHh-hccCCHHHHHHHHh
Confidence 244454332 2333333345678898888877631 112 34588877777443
No 79
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.49 E-value=0.036 Score=62.22 Aligned_cols=54 Identities=22% Similarity=0.540 Sum_probs=48.2
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
..+.|.+|-.+..++.+=.+++. +||-..|+.|.+--.+.|.+.||+|+++...
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 35899999999999998888888 9999999999988778899999999998844
No 80
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=90.05 E-value=1.7 Score=46.00 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=36.4
Q ss_pred cEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCC
Q 002020 419 RLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDP 481 (980)
Q Consensus 419 ~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp 481 (980)
++.-..|.+.-|.. -|--+.+. ...|+|+++.|||- --.|+++-+.+...-+-
T Consensus 64 ~i~l~pR~~klGLg-----tAy~hgl~----~a~g~fiviMDaDl-sHhPk~ipe~i~lq~~~ 116 (238)
T KOG2978|consen 64 NILLKPRTKKLGLG-----TAYIHGLK----HATGDFIVIMDADL-SHHPKFIPEFIRLQKEG 116 (238)
T ss_pred cEEEEeccCcccch-----HHHHhhhh----hccCCeEEEEeCcc-CCCchhHHHHHHHhhcc
Confidence 47777887744421 12233344 46899999999998 46899999887766553
No 81
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.46 E-value=0.36 Score=37.27 Aligned_cols=44 Identities=32% Similarity=0.792 Sum_probs=32.7
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASP 57 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~ 57 (980)
.|.||.+.. .+.+. ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22222 224899999999976666678899999975
No 82
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=87.83 E-value=0.55 Score=39.92 Aligned_cols=47 Identities=4% Similarity=-0.016 Sum_probs=35.8
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
+|.||++- +.+ +.+. .||+-.||.|.+.-.++ ++.||-|+.++..+|
T Consensus 3 ~Cpi~~~~-~~~----Pv~~--~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~ 49 (63)
T smart00504 3 LCPISLEV-MKD----PVIL--PSGQTYERRAIEKWLLS-HGTDPVTGQPLTHED 49 (63)
T ss_pred CCcCCCCc-CCC----CEEC--CCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhh
Confidence 69999986 333 3332 67899999999877766 689999999985544
No 83
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.05 E-value=0.39 Score=47.77 Aligned_cols=50 Identities=26% Similarity=0.735 Sum_probs=37.6
Q ss_pred cccccCCCccccCCCCeeecCCCC-CCCcccchHHHHHh--hcCccCCCCCCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSEC-NFPICKSCFDDEIK--EGRKACLRCASPYDEN 61 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCr~Cyeye~~--eG~~~CP~Ckt~Y~e~ 61 (980)
-|.||.|. -.-|-|.-=||| ||.||-.||--=.| .-.-.||-|||-|+..
T Consensus 82 eCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 82 ECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred eccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 58899874 123457776675 99999999955555 5568999999999754
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=76.13 E-value=1.3 Score=37.80 Aligned_cols=48 Identities=27% Similarity=0.616 Sum_probs=34.2
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
-|.|=.|+..-.. ..+.+ |+=-||+.|+.-||-+| ||=|.+|++-++.
T Consensus 7 ~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~~~ 54 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFDDP 54 (55)
T ss_pred ceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCCCC
Confidence 3455556654111 13444 59999999999999888 9999999986653
No 85
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=73.45 E-value=20 Score=40.42 Aligned_cols=47 Identities=23% Similarity=0.194 Sum_probs=32.1
Q ss_pred eeEEEEecCCCCCCC---HHHHHHHHHHHHcCCCCC---CCcEEEEecCCCcchhhH
Q 002020 252 AVDFFVSTVDPLKEP---PLITANTVLSILALDYPV---DKVSCYVSDDGAAMLTFE 302 (980)
Q Consensus 252 ~VDvfV~t~dp~kEp---~~v~~nTvls~la~dYP~---~kl~~yvsDDg~~~ltf~ 302 (980)
...|+||.|| || +.+.-.|+-+ |.-.|-. -+..+.|+|||+.+-|.+
T Consensus 68 ~lsVIVpayn---E~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~ 120 (323)
T KOG2977|consen 68 YLSVIVPAYN---EEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVE 120 (323)
T ss_pred eeEEEEecCC---cccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHH
Confidence 6889999999 65 3444455444 3334443 477889999999984443
No 86
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=73.38 E-value=2.1 Score=47.98 Aligned_cols=41 Identities=29% Similarity=0.668 Sum_probs=34.2
Q ss_pred ccCCCCeeecCCCCCCCc--------cc--chHHHHHhhcCccCCCCCCCC
Q 002020 18 FTANGEVFVACSECNFPI--------CK--SCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 18 ~~~~G~~fvaC~eC~Fpv--------Cr--~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
...+|+-.--|.-|+||| |+ -|||.+|.|-.+.||+|-.|.
T Consensus 83 ek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 83 EKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRV 133 (389)
T ss_pred ccccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHH
Confidence 344677677799999998 65 599999999999999998776
No 87
>PHA02929 N1R/p28-like protein; Provisional
Probab=72.72 E-value=4.1 Score=44.75 Aligned_cols=54 Identities=28% Similarity=0.560 Sum_probs=38.2
Q ss_pred CCCCcccccCCCccccCC-CCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTAN-GEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~-G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.....|.||.+.+..++- ...+..=..|+=.-|++|..- -.+.++.||-|++++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~-Wl~~~~tCPlCR~~~ 226 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDI-WKKEKNTCPVCRTPF 226 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHH-HHhcCCCCCCCCCEe
Confidence 456789999998764431 112333337888999999954 445678999999876
No 88
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=70.77 E-value=2.3 Score=33.99 Aligned_cols=43 Identities=26% Similarity=0.602 Sum_probs=32.6
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCA 55 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ck 55 (980)
.|.||-+++.. ++..+... |+=-.|+.|.+--.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 66777774 9999999999554444 57999995
No 89
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=70.10 E-value=3.3 Score=31.71 Aligned_cols=26 Identities=35% Similarity=0.997 Sum_probs=18.8
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCc
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPI 35 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 35 (980)
+|.-||.++.+.. ++ -+-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999998654 33 37999999876
No 90
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=69.46 E-value=2.7 Score=34.34 Aligned_cols=26 Identities=31% Similarity=0.889 Sum_probs=21.2
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCc
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPI 35 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 35 (980)
+|.-||.++..+.. +-+-|.+|++.|
T Consensus 4 ~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 4 ICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred ECCCCCCEeecCCC--CceECCCCCceE
Confidence 69999999888743 348999999876
No 91
>PHA02862 5L protein; Provisional
Probab=66.45 E-value=3.7 Score=41.63 Aligned_cols=47 Identities=26% Similarity=0.514 Sum_probs=31.3
Q ss_pred CCcccccCCCccccCCCCeeecCCCC---CCCcccchHHHHH-hhcCccCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSEC---NFPICKSCFDDEI-KEGRKACLRCASPY 58 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC---~FpvCr~Cyeye~-~eG~~~CP~Ckt~Y 58 (980)
+.+|-||-++ ++|..-|| .| .==|=+.|.+-=. ..++..|++||++|
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY 52 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY 52 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence 5789999886 23446788 44 1113356653333 37789999999999
No 92
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=66.09 E-value=4.3 Score=45.39 Aligned_cols=51 Identities=22% Similarity=0.550 Sum_probs=41.2
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
+-|.+|--++-++++=. .-=|+|+.+.|..|..-=-.-|...||.|.+..-
T Consensus 1 ~~Cp~CKt~~Y~np~lk--~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPDLK--LMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCCcccccceecCccce--eeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 35888888888877644 4445999999999996667789999999999873
No 93
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=65.86 E-value=2.9 Score=52.03 Aligned_cols=45 Identities=22% Similarity=0.606 Sum_probs=29.6
Q ss_pred cccccCCCccccCCCCeeecCCCCCCC----cccchHHHHHhhcCccCCCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFP----ICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~Fp----vCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
+|.-||..+ .+|.- =|.+||-+ .|.-|- .+..+|..-||+|+++-
T Consensus 3 ~Cp~Cg~~n---~~~ak--FC~~CG~~l~~~~Cp~CG-~~~~~~~~fC~~CG~~~ 51 (645)
T PRK14559 3 ICPQCQFEN---PNNNR--FCQKCGTSLTHKPCPQCG-TEVPVDEAHCPNCGAET 51 (645)
T ss_pred cCCCCCCcC---CCCCc--cccccCCCCCCCcCCCCC-CCCCcccccccccCCcc
Confidence 566666652 22332 36666554 466666 55778889999999988
No 94
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=64.57 E-value=6.2 Score=29.00 Aligned_cols=39 Identities=28% Similarity=0.820 Sum_probs=27.0
Q ss_pred ccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCC
Q 002020 9 CNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRC 54 (980)
Q Consensus 9 C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~C 54 (980)
|.||.+. .+--... .|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~----~~~~~~~---~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE----LKDPVVL---PCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC----CCCcEEe---cCCChHHHHHHHHHHHhCcCCCCCC
Confidence 7788777 1111122 4788899999976666677889987
No 95
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=64.44 E-value=13 Score=43.10 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCCCchhhHHH--HHHhccccCCCCEEEEecCCCCCCchHHHHHHHh
Q 002020 432 QHHKKAGAENA--LVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMC 476 (980)
Q Consensus 432 ~hh~KAGalNa--llrvsa~~tng~~il~lD~D~~i~~~~~Lr~amc 476 (980)
=.+.|+-.|=- +|.- +.+.+||-.+|||.|+| -++.|-+-
T Consensus 141 VR~GKgEGMiiG~lLAk---~~g~~YVGFiDADNyiP--GaV~EYvk 182 (393)
T PRK14503 141 VRSGKGEGMIIGLLLAK---ALGARYVGFVDADNYIP--GAVNEYVK 182 (393)
T ss_pred eecCcchHHHHHHHHHH---HhCCCeEeEeecccCCC--chHHHHHH
Confidence 34568888843 3332 45899999999999985 67777553
No 96
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=63.09 E-value=6.3 Score=32.39 Aligned_cols=45 Identities=24% Similarity=0.636 Sum_probs=31.7
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCC-cccchHHHHHhhcCccCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFP-ICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
..|.||.++.-. -.+.+| +=- +|..|++--++ .++.||-|+++.+
T Consensus 3 ~~C~iC~~~~~~----~~~~pC---gH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 3 EECPICFENPRD----VVLLPC---GHLCFCEECAERLLK-RKKKCPICRQPIE 48 (50)
T ss_dssp SB-TTTSSSBSS----EEEETT---CEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred CCCccCCccCCc----eEEeCC---CChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence 469999987221 245555 667 99999966665 7799999999874
No 97
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=63.07 E-value=22 Score=38.34 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=38.1
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCceEEE
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRDVCYV 490 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~v~~V 490 (980)
.-|-+.|++++ .+.++|++.+.=|-.+.+++++.+++-.| .||+ +|.|
T Consensus 41 s~~~~yN~a~~----~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~----~G~i 89 (217)
T PF13712_consen 41 SMAAAYNEAME----KAKAKYLVFLHQDVFIINENWLEDILEIFEEDPN----IGMI 89 (217)
T ss_dssp -TTTHHHHHGG----G--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT----EEEE
T ss_pred CHHHHHHHHHH----hCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC----ccEE
Confidence 36778899998 47999999999999999999999999988 8987 5554
No 98
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=23 Score=41.36 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=37.1
Q ss_pred CCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCC
Q 002020 246 EPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGA 296 (980)
Q Consensus 246 ~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~ 296 (980)
-+.+||++.|+|.-.| |--.+.++||-|++.-.=|.---.+.+.||=+
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDfS 197 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFS 197 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccCC
Confidence 4678999999999999 99999999999998755333233456667644
No 99
>PRK12495 hypothetical protein; Provisional
Probab=62.18 E-value=4.4 Score=43.74 Aligned_cols=35 Identities=29% Similarity=0.618 Sum_probs=26.9
Q ss_pred eeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcccc
Q 002020 24 VFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLLDD 65 (980)
Q Consensus 24 ~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~dd 65 (980)
.-.-|.+|+.||= +..|...||-|.+.+.++..+.
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~~~~~~ 75 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTEDGAAG 75 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCccccccccc
Confidence 4456888988885 3489999999999997655433
No 100
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=61.17 E-value=6.8 Score=40.44 Aligned_cols=51 Identities=27% Similarity=0.602 Sum_probs=35.2
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCC---CcccchHHHHHh-hcCccCCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNF---PICKSCFDDEIK-EGRKACLRCASPYDE 60 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~F---pvCr~Cyeye~~-eG~~~CP~Ckt~Y~e 60 (980)
..+..|.||-++ +++..-|| .|.= -|=+.|-+-=.+ -|+..|++|+++|.-
T Consensus 6 ~~~~~CRIC~~~-----~~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 6 LMDKCCWICKDE-----YDVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCeeEecCCC-----CCCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 456799999766 23345688 6633 235678865544 567999999999943
No 101
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=58.71 E-value=5.1 Score=33.79 Aligned_cols=28 Identities=29% Similarity=0.892 Sum_probs=18.5
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHH
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFD 41 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cye 41 (980)
.|.|||+++|+..+ .-+ +=+| ||.+|++
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999998653 111 1123 7888884
No 102
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=58.26 E-value=19 Score=41.53 Aligned_cols=40 Identities=25% Similarity=0.231 Sum_probs=29.0
Q ss_pred CCCCchhhHHH--HHHhccccCCCCEEEEecCCCCCCchHHHHHHHh
Q 002020 432 QHHKKAGAENA--LVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMC 476 (980)
Q Consensus 432 ~hh~KAGalNa--llrvsa~~tng~~il~lD~D~~i~~~~~Lr~amc 476 (980)
=.+.|+-.|=- +|.- +.+.+||-.+|||.|+| -++.|-+-
T Consensus 140 VR~GKgEGMiiG~lLAk---~~g~~YVGFiDaDNyiP--GaV~EYvk 181 (381)
T TIGR02460 140 VRSGKGEGMLLGLLLAK---AIGAEYVGFVDADNYFP--GAVNEYVK 181 (381)
T ss_pred eecCcchHHHHHHHHHH---HhCCceEeEeecccCCC--chHHHHHH
Confidence 34669888843 3332 45899999999999985 67777553
No 103
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=58.15 E-value=8.2 Score=44.02 Aligned_cols=52 Identities=31% Similarity=0.893 Sum_probs=42.3
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
...|.+|++.. +.+--.|+|| -|+|-+|-+|-. -..++++.||.|.++|+-.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 46899999884 4444579999 999999999983 3458999999999999654
No 104
>PRK00420 hypothetical protein; Validated
Probab=57.11 E-value=4.4 Score=39.63 Aligned_cols=30 Identities=27% Similarity=0.626 Sum_probs=23.4
Q ss_pred ecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 26 VACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 26 vaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
-.|..|++|.= +.++|.-.||.|++.+...
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v~ 53 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIVK 53 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeeec
Confidence 46888888863 3379999999999998543
No 105
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=56.77 E-value=8.9 Score=29.89 Aligned_cols=39 Identities=26% Similarity=0.726 Sum_probs=27.3
Q ss_pred ccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCC
Q 002020 9 CNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRC 54 (980)
Q Consensus 9 C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~C 54 (980)
|.||-+.... +++.- .||--.|+.|.+.-.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 7788665322 44433 78999999999776666 6999987
No 106
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.35 E-value=7.3 Score=42.36 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=36.6
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHH---HhhcCccCCCCCCCCCCCc
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE---IKEGRKACLRCASPYDENL 62 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye---~~eG~~~CP~Ckt~Y~e~~ 62 (980)
-|+||=|.. =|+.|-| ||---|.||. |- ...+++.||=||..-.++.
T Consensus 49 dCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs~~~ 98 (230)
T KOG0823|consen 49 DCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVSIDT 98 (230)
T ss_pred eeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccccce
Confidence 588886653 3467877 8999999998 65 5588899999999985544
No 107
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=54.50 E-value=8.4 Score=30.00 Aligned_cols=40 Identities=20% Similarity=0.617 Sum_probs=29.2
Q ss_pred ccccCCCccccCCCCeeecCCCCCCCcccchHHHHHh-hcCccCCCC
Q 002020 9 CNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIK-EGRKACLRC 54 (980)
Q Consensus 9 C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~-eG~~~CP~C 54 (980)
|.||.+...... --.+|+=..|+.|..--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887643322 2236799999999976655 788899988
No 108
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=54.36 E-value=10 Score=30.65 Aligned_cols=38 Identities=32% Similarity=0.905 Sum_probs=28.4
Q ss_pred CCCcccccCCCccccCCCCeeecCCCC-CCCcccchHHHHHhhc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSEC-NFPICKSCFDDEIKEG 47 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCr~Cyeye~~eG 47 (980)
....|..|+..+ .|.-+ -|.+| .|-+|..||...+..+
T Consensus 3 ~~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~ 41 (44)
T smart00291 3 HSYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGG 41 (44)
T ss_pred CCcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCC
Confidence 456899999743 35556 79999 9999999997544333
No 109
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=52.75 E-value=4.4e+02 Score=36.08 Aligned_cols=111 Identities=26% Similarity=0.345 Sum_probs=64.2
Q ss_pred hccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecC
Q 002020 618 KTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMP 697 (980)
Q Consensus 618 ~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p 697 (980)
-+||+-.+|-+=....-||++. |..+| .+.||+..|+....||-++.++.
T Consensus 1146 ~HYGHPD~~drif~~TRGGvSK----------Ask~i-------------------nlsEDIfAG~n~tlRgG~itH~E- 1195 (1679)
T KOG0916|consen 1146 LHYGHPDVFDRIFHITRGGVSK----------ASKGI-------------------NLSEDIFAGFNATLRGGNITHHE- 1195 (1679)
T ss_pred eecCCCcHhhhhhhhccccchH----------hhccc-------------------ccchHhhhhhhHHhhCCCcccce-
Confidence 3677777776644445788764 33333 78999999999999999998884
Q ss_pred CCCceecccCC-CHHHHHHHHHHhhchhHHHHHhhcCccccccCCCCCChhhHHHHHh-hhhhhhhHHH
Q 002020 698 LRPAFKGSAPI-NLSDRLHQVLRWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYIN-TIVYPFTSLP 764 (980)
Q Consensus 698 ~ra~~~G~aP~-tl~~~l~QR~RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~-~~lypl~sl~ 764 (980)
-...|..-+ .+..-..=-..-+.|+=|..+++. .|.+ +.++.+..-|++.. +.-+++.++.
T Consensus 1196 --YiQvGKGRDvGlnqI~~FeaKia~G~GEQ~LSRd---~YrL-G~~ldffRmLSfyftt~GF~~n~m~ 1258 (1679)
T KOG0916|consen 1196 --YIQVGKGRDVGLNQISNFEAKIANGNGEQTLSRD---YYRL-GTQLDFFRMLSFYFTTVGFYFNNMF 1258 (1679)
T ss_pred --eeecccccccCcchhhhhhhhhcCCCcchhhhHH---HHHh-cccccHHHHHHHHhccccHHHHhHH
Confidence 122232111 111111112355788887777763 2222 34577776676433 3334444433
No 110
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=50.64 E-value=2.3 Score=41.55 Aligned_cols=45 Identities=33% Similarity=0.717 Sum_probs=32.1
Q ss_pred CCCcccccCCCccccC-CCCeeecCCCCCCCcccchHHHHHhhcCccCC
Q 002020 5 GAPVCNTCGDQVGFTA-NGEVFVACSECNFPICKSCFDDEIKEGRKACL 52 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP 52 (980)
+...|..|+...|+-. .| ..|..|...||+.|-.|-.+++.=.|-
T Consensus 53 ~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~ 98 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCK 98 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEH
T ss_pred CCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEECh
Confidence 5679999999987753 45 889999999999998773344433443
No 111
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=48.58 E-value=2.2 Score=37.62 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=18.9
Q ss_pred cchHHHHHhhcCccCCCCCCCC
Q 002020 37 KSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 37 r~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
+-|+|++..||.=.||.|+..|
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~Y 63 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREY 63 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEE
T ss_pred hhhhcccccCCEEEcCCCCCEE
Confidence 4567778889999999999988
No 112
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=47.73 E-value=20 Score=30.97 Aligned_cols=46 Identities=24% Similarity=0.755 Sum_probs=32.9
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.-|+.|+.++-.+.. +-++-=.||-| |.+|-|... ++.||-|+..+
T Consensus 6 pnCE~C~~dLp~~s~-~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGel 51 (57)
T PF06906_consen 6 PNCECCDKDLPPDSP-EAYICSFECTF--CADCAETML---NGVCPNCGGEL 51 (57)
T ss_pred CCccccCCCCCCCCC-cceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcc
Confidence 579999999655442 33444468877 999997665 47899998643
No 113
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=46.53 E-value=7.5 Score=40.72 Aligned_cols=26 Identities=27% Similarity=0.788 Sum_probs=19.8
Q ss_pred ccccCCCccccCCCCeeecCCCCCCCc-ccc
Q 002020 9 CNTCGDQVGFTANGEVFVACSECNFPI-CKS 38 (980)
Q Consensus 9 C~iCgd~vg~~~~G~~fvaC~eC~Fpv-Cr~ 38 (980)
|+-|... .+.+.-..|+.|=||+ |-.
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~ 81 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTN 81 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccc
Confidence 8888775 2344578999999999 765
No 114
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=46.40 E-value=68 Score=34.22 Aligned_cols=61 Identities=15% Similarity=0.316 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCccccc--hhHHHHHHHHHHHHHHHHHHHHHhcCCC-Cceee
Q 002020 880 PTSLIIVNMVGVVAGFSDALNKGYEAWG--PLFGKVFFAFWVIVHLYPFLKGLMGRQN-RTPTI 940 (980)
Q Consensus 880 ~~~Llllnlvaiv~gi~r~~~~~~~~~~--~~~g~l~~~~Wvv~~l~Pfl~gL~gR~~-~~p~~ 940 (980)
=..|+++.+++++-|+.-+++..-+..| .+....+..++++|.+|-|+--..+-++ |.++.
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~~ 162 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW 162 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCchH
Confidence 4457888889999998888865543344 2344456777888888888766666333 55553
No 115
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=45.99 E-value=27 Score=43.03 Aligned_cols=49 Identities=16% Similarity=0.068 Sum_probs=41.5
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcc
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAM 298 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ 298 (980)
.+.||++.|+|+-+| |...+..+||-|++..-=|.---.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999998887655556678999998753
No 116
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=45.96 E-value=24 Score=40.98 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=24.4
Q ss_pred CCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHH
Q 002020 434 HKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAM 475 (980)
Q Consensus 434 h~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~am 475 (980)
+.|+-.|=-.+-+.. +...+||-.+|||.|+ |-++.|-+
T Consensus 142 ~GKgEGMiiGillAk-~~g~~YVGFvDADNyi--PGaV~EYv 180 (381)
T PF09488_consen 142 NGKGEGMIIGILLAK-APGKRYVGFVDADNYI--PGAVNEYV 180 (381)
T ss_dssp SSHHHHHHHHHHHHH-HTT-SEEEE--TTBS---HHHHHHHH
T ss_pred cCchHHHHHHHHHHH-hcCCceEeEeeccCCC--cchHHHHH
Confidence 459988854332222 4789999999999997 67787754
No 117
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PRK04023 DNA polymerase II large subunit; Validated
Probab=44.22 E-value=15 Score=47.43 Aligned_cols=44 Identities=23% Similarity=0.623 Sum_probs=32.7
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCC-----CcccchHHHHHh-hcCccCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNF-----PICKSCFDDEIK-EGRKACLRCASPY 58 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~F-----pvCr~Cyeye~~-eG~~~CP~Ckt~Y 58 (980)
.....|.-||-.. ....|.+|+= ..|..| ++ .+...||.|+..-
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El 673 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREP 673 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCC
Confidence 4567899999883 4568999984 468888 33 3346799999887
No 119
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=43.89 E-value=33 Score=30.00 Aligned_cols=51 Identities=24% Similarity=0.541 Sum_probs=37.9
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcC-ccCCCCC
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGR-KACLRCA 55 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~-~~CP~Ck 55 (980)
.....+|..||-.|.-.+.+ +-.+|.+|+=-+-+=|. .-|+-|+ -.||.|+
T Consensus 4 ~~~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CG 55 (59)
T PRK14890 4 MMEPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCG 55 (59)
T ss_pred cccCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCC
Confidence 35567899999998666666 44579999987555576 5677776 6899996
No 120
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=43.41 E-value=8.2 Score=43.59 Aligned_cols=36 Identities=28% Similarity=0.691 Sum_probs=27.3
Q ss_pred CCCCCCcccccCCCccccCCCCeeecCCCC-CCCcccchHH
Q 002020 2 MQSGAPVCNTCGDQVGFTANGEVFVACSEC-NFPICKSCFD 41 (980)
Q Consensus 2 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCr~Cye 41 (980)
|+...--|.+|--++- --.|+-|+|| +|-.|-||+-
T Consensus 1 m~~~k~hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~ 37 (432)
T COG5114 1 MGGVKIHCDVCFLDMT----DLTFIKCNECPAVDLCLPCFV 37 (432)
T ss_pred CCCceeeehHHHHhhh----cceeeeeecccccceehhhhh
Confidence 4444557888876532 3479999999 9999999994
No 121
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=43.21 E-value=19 Score=40.80 Aligned_cols=38 Identities=29% Similarity=0.775 Sum_probs=28.5
Q ss_pred CCCCCcccc--cCCCccccCCCCeeecCCC-CCCCcccchHH
Q 002020 3 QSGAPVCNT--CGDQVGFTANGEVFVACSE-CNFPICKSCFD 41 (980)
Q Consensus 3 ~~~~~~C~i--Cgd~vg~~~~G~~fvaC~e-C~FpvCr~Cye 41 (980)
+.+|-.|.- ||..+....| .--|.|.. |+|--||.|.|
T Consensus 312 q~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e 352 (446)
T KOG0006|consen 312 QMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKE 352 (446)
T ss_pred ecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHh
Confidence 345778875 9988766653 22478876 99999999997
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=42.90 E-value=9.5 Score=43.52 Aligned_cols=32 Identities=25% Similarity=0.731 Sum_probs=25.5
Q ss_pred CCCcccchHHHHHhhcC--ccCCCCCCCCCCCcc
Q 002020 32 NFPICKSCFDDEIKEGR--KACLRCASPYDENLL 63 (980)
Q Consensus 32 ~FpvCr~Cyeye~~eG~--~~CP~Ckt~Y~e~~~ 63 (980)
+|-|||.|+..-+-.-+ +-||-|.++|+++.+
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ki 34 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEEKI 34 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchhhh
Confidence 57899999965554444 899999999988765
No 123
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=42.78 E-value=15 Score=29.99 Aligned_cols=29 Identities=31% Similarity=0.699 Sum_probs=21.1
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPIC 36 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvC 36 (980)
-.|+-||..+..+++.. -+-|..|+.++-
T Consensus 4 y~C~~CG~~~~~~~~~~-~~~Cp~CG~~~~ 32 (46)
T PRK00398 4 YKCARCGREVELDEYGT-GVRCPYCGYRIL 32 (46)
T ss_pred EECCCCCCEEEECCCCC-ceECCCCCCeEE
Confidence 36888988888777655 467888877653
No 124
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=42.49 E-value=15 Score=30.40 Aligned_cols=31 Identities=32% Similarity=1.090 Sum_probs=25.3
Q ss_pred cccccCCCccccCCCCeeecCCCC-CCCcccchHHH
Q 002020 8 VCNTCGDQVGFTANGEVFVACSEC-NFPICKSCFDD 42 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCr~Cyey 42 (980)
.|..|+.++. +...+.|.+| .|-+|-+||..
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~~ 33 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFSA 33 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhhC
Confidence 5888987643 4588999999 99999999953
No 125
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=42.38 E-value=46 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=20.0
Q ss_pred chhhHHHHHHhccccCCCCEEEEecCCCCCC
Q 002020 436 KAGAENALVRVSAVLTNAPYILNLDCDHYVN 466 (980)
Q Consensus 436 KAGalNallrvsa~~tng~~il~lD~D~~i~ 466 (980)
+...+|++.+. ..+++.++.+|+|-++-
T Consensus 58 ~~~~~~~~~~~---~~~~dWvl~~D~DEfl~ 85 (97)
T PF13704_consen 58 QRAWRNALIER---AFDADWVLFLDADEFLV 85 (97)
T ss_pred HHHHHHHHHHh---CCCCCEEEEEeeeEEEe
Confidence 34455666653 35889999999998764
No 126
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=39.99 E-value=18 Score=31.50 Aligned_cols=30 Identities=30% Similarity=0.738 Sum_probs=24.4
Q ss_pred CCCcccccCCC---ccccCCCCeeecCCCCCCC
Q 002020 5 GAPVCNTCGDQ---VGFTANGEVFVACSECNFP 34 (980)
Q Consensus 5 ~~~~C~iCgd~---vg~~~~G~~fvaC~eC~Fp 34 (980)
.|-+|..|+.. ++..+||...+-|-+|+|.
T Consensus 8 AGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 8 AGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred ccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 47789999854 4557899999999999985
No 127
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=39.79 E-value=14 Score=43.56 Aligned_cols=33 Identities=33% Similarity=0.969 Sum_probs=27.7
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCC-CCcccchHH
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECN-FPICKSCFD 41 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCr~Cye 41 (980)
....|..|..+| +|-.+|-|.||. |-+|-+|+-
T Consensus 13 ~ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs 46 (438)
T KOG0457|consen 13 GKYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFS 46 (438)
T ss_pred CCCCCccHhHHh----ccceEEEeecCCCcchhHHHHh
Confidence 446899998875 466889999998 999999994
No 128
>PF04641 Rtf2: Rtf2 RING-finger
Probab=39.20 E-value=25 Score=38.94 Aligned_cols=51 Identities=27% Similarity=0.623 Sum_probs=37.2
Q ss_pred CcccccCCCccccCCCC-eeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 7 PVCNTCGDQVGFTANGE-VFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~-~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
-+|.|++... +|. -||+=--||=-+|..|.+ |.+ .+..||.|.++|++.|+
T Consensus 114 ~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alk-e~k-~~~~Cp~c~~~f~~~Di 165 (260)
T PF04641_consen 114 FICPVTGKEF----NGKHKFVYLRPCGCVFSEKALK-ELK-KSKKCPVCGKPFTEEDI 165 (260)
T ss_pred eECCCCCccc----CCceeEEEEcCCCCEeeHHHHH-hhc-ccccccccCCccccCCE
Confidence 4788887765 454 477766778777888873 334 34679999999987775
No 129
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=38.61 E-value=3.5e+02 Score=30.55 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=37.1
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEecCCC-cchhhHHHHh
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSC-YVSDDGA-AMLTFETLVQ 306 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~-yvsDDg~-~~ltf~al~E 306 (980)
..+-++|=|+.|-.| +++ ..-.=.-.+++++||++++++ .+..|.. -.-|.+.|.+
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~ 78 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEA 78 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHH
Confidence 355688999999887 454 466667778888999998877 3333332 1445555543
No 130
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=38.57 E-value=56 Score=41.21 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=29.2
Q ss_pred CCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHh
Q 002020 432 QHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMC 476 (980)
Q Consensus 432 ~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amc 476 (980)
=.+.|+-.|=-.+-... +.+.+||-.+|||.|+| -++.|-+-
T Consensus 145 vr~gk~egm~~g~~la~-~~g~~yvgfidadny~p--g~v~ey~~ 186 (694)
T PRK14502 145 IRSGKAEGMILGIILTM-FSGRDYVGFIDTDNYIP--GAVWEYAK 186 (694)
T ss_pred eecCcchHHHHHHHHHH-hcCCceEeEeeccCCCC--chHHHHHH
Confidence 34669988843222111 57899999999999985 67777553
No 131
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=38.40 E-value=20 Score=35.92 Aligned_cols=48 Identities=25% Similarity=0.746 Sum_probs=35.7
Q ss_pred CCCcccccCCCccc--cCCCCeeecCCCCCCCcccchHHH---HHhhcCccCCCCCC
Q 002020 5 GAPVCNTCGDQVGF--TANGEVFVACSECNFPICKSCFDD---EIKEGRKACLRCAS 56 (980)
Q Consensus 5 ~~~~C~iCgd~vg~--~~~G~~fvaC~eC~FpvCr~Cyey---e~~eG~~~CP~Ckt 56 (980)
.+..|..||....+ ...| -|+.|. .||.|+- |+. ...+....||+|+.
T Consensus 16 ~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 16 TGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 47899999999665 4568 999993 6999996 221 22255689999997
No 132
>PRK11827 hypothetical protein; Provisional
Probab=38.29 E-value=22 Score=31.16 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=12.7
Q ss_pred CcccchHHHHHhhcCccCCCCCCCC
Q 002020 34 PICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 34 pvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
|+|+-=.+|...+..=.|..|+-.|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laY 36 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAF 36 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeec
Confidence 4444433333333335677777777
No 133
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=38.15 E-value=34 Score=36.64 Aligned_cols=51 Identities=29% Similarity=0.508 Sum_probs=35.0
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHh---------------hcCccCCCCCCCCCCCc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIK---------------EGRKACLRCASPYDENL 62 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~---------------eG~~~CP~Ckt~Y~e~~ 62 (980)
+.-.|.||-|.+- ++.+. .|+--.|++|-+.-.. .+...||-|+++....+
T Consensus 17 ~~~~CpICld~~~-----dPVvT--~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~ 82 (193)
T PLN03208 17 GDFDCNICLDQVR-----DPVVT--LCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEAT 82 (193)
T ss_pred CccCCccCCCcCC-----CcEEc--CCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhc
Confidence 4468999998752 23332 5899999999964221 12368999999995544
No 134
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=37.53 E-value=17 Score=26.99 Aligned_cols=28 Identities=36% Similarity=0.979 Sum_probs=11.8
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccch
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSC 39 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~C 39 (980)
.|++|+.++.. +.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~~----~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPIDG----GWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS----S------EEE-TTT-----HHH
T ss_pred cCCcCCCcCCC----CceEECccCCCccChhc
Confidence 58899988543 57888999999998877
No 135
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.05 E-value=12 Score=41.61 Aligned_cols=53 Identities=21% Similarity=0.501 Sum_probs=0.0
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCCcccchH-HHHHh-----hcCccCCCCCCC
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCF-DDEIK-----EGRKACLRCASP 57 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cy-eye~~-----eG~~~CP~Ckt~ 57 (980)
+.+.++|++||.++-+++|-|-.+ ..=-=-+|--=+ |+..| ---|-||=||++
T Consensus 221 hl~d~vCaVCg~~~~~s~~eegvi--enty~LsCnHvFHEfCIrGWcivGKkqtCPYCKek 279 (328)
T KOG1734|consen 221 HLSDSVCAVCGQQIDVSVDEEGVI--ENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEK 279 (328)
T ss_pred CCCcchhHhhcchheeecchhhhh--hhheeeecccchHHHhhhhheeecCCCCCchHHHH
No 136
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.88 E-value=30 Score=31.38 Aligned_cols=46 Identities=22% Similarity=0.693 Sum_probs=30.6
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.-|.-|+.++--+.+--.+-- -||-| |.+|.|.-. .+.||.|+..+
T Consensus 6 PnCECCDrDLpp~s~dA~ICt-fEcTF--CadCae~~l---~g~CPnCGGel 51 (84)
T COG3813 6 PNCECCDRDLPPDSTDARICT-FECTF--CADCAENRL---HGLCPNCGGEL 51 (84)
T ss_pred CCCcccCCCCCCCCCceeEEE-Eeeeh--hHhHHHHhh---cCcCCCCCchh
Confidence 568999998665543333222 37766 999986543 26899998644
No 137
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=36.88 E-value=25 Score=28.69 Aligned_cols=30 Identities=33% Similarity=0.925 Sum_probs=24.2
Q ss_pred cccccCCCccccCCCCeeecCCCCC-CCcccchHHH
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECN-FPICKSCFDD 42 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCr~Cyey 42 (980)
.|.+|+..+. | ....|.+|. |-+|.+||..
T Consensus 2 ~C~~C~~~i~----g-~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 2 SCDGCLKPIV----G-VRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCcCCCCCCc----C-CEEECCCCCCCcCHHHHHCc
Confidence 5889988532 4 788999996 9999999953
No 138
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=36.74 E-value=24 Score=38.40 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=56.8
Q ss_pred hhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEe
Q 002020 616 FEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYC 695 (980)
Q Consensus 616 ~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~ 695 (980)
.+..+|-..++.++.+.+++|+++ .-| || | .||-+++.||..+|.+....
T Consensus 108 y~~~~Gg~~~~~k~~f~~VNGf~n----------------------~f~----GW--G--gEDdd~~~Rl~~~g~~~~r~ 157 (219)
T cd00899 108 YKTYFGGVLALTREQFRKVNGFSN----------------------AYW----GW--G--GEDDDLYNRIKAAGLKITRP 157 (219)
T ss_pred cccccccceeeEHHHHHHhCCcCC----------------------cCc----cC--C--cchHHHHHHHHHCCCeEEec
Confidence 345689999999999999999975 122 34 3 38999999999999987766
Q ss_pred cCCCCc-----e------ecccCCCHHHHHHHHHHhhchhHHHH
Q 002020 696 MPLRPA-----F------KGSAPINLSDRLHQVLRWALGSVEIF 728 (980)
Q Consensus 696 ~p~ra~-----~------~G~aP~tl~~~l~QR~RWa~G~lQil 728 (980)
... .. - ....|.-+.....++.||+...+..+
T Consensus 158 ~~~-~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 158 SGD-TGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred cCc-ccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 431 11 0 12234445556677888887777554
No 139
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=36.73 E-value=31 Score=27.69 Aligned_cols=43 Identities=19% Similarity=0.541 Sum_probs=31.1
Q ss_pred ccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCC
Q 002020 9 CNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCAS 56 (980)
Q Consensus 9 C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt 56 (980)
|.+|-.+. +++..+++- .|+=-+|..|.+-.. .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l~--~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRLT--SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEEc--ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88999887 333333222 569999999995544 66789999985
No 140
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=36.39 E-value=13 Score=31.29 Aligned_cols=32 Identities=22% Similarity=0.426 Sum_probs=22.5
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCCc
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFPI 35 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 35 (980)
....-.|..||.++..+. ...-+.|..|++.|
T Consensus 3 ~~~~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 3 AMMEYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred ceEEEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 344558999999995443 22358899999876
No 141
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=35.04 E-value=15 Score=28.74 Aligned_cols=14 Identities=21% Similarity=0.598 Sum_probs=11.4
Q ss_pred cCCCCCCCCCCCcc
Q 002020 50 ACLRCASPYDENLL 63 (980)
Q Consensus 50 ~CP~Ckt~Y~e~~~ 63 (980)
.||+|++.|+-+|.
T Consensus 4 ~Cp~C~~~y~i~d~ 17 (36)
T PF13717_consen 4 TCPNCQAKYEIDDE 17 (36)
T ss_pred ECCCCCCEEeCCHH
Confidence 59999999976553
No 142
>PRK07220 DNA topoisomerase I; Validated
Probab=34.78 E-value=19 Score=45.74 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=31.2
Q ss_pred CcccccCCCccc--cCCCCeeecCCCCCCCcccchHHHHHh----hcCccCCCCCCC
Q 002020 7 PVCNTCGDQVGF--TANGEVFVACSECNFPICKSCFDDEIK----EGRKACLRCASP 57 (980)
Q Consensus 7 ~~C~iCgd~vg~--~~~G~~fvaC~eC~FpvCr~Cyeye~~----eG~~~CP~Ckt~ 57 (980)
..|..||.++.. ...|..|..|. +||-|+--+-...+ .-++.||.|+.+
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~~ 644 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGLN 644 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCCc
Confidence 479999987554 23567799995 56777744432221 124678888754
No 143
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.02 E-value=34 Score=40.42 Aligned_cols=47 Identities=19% Similarity=0.552 Sum_probs=33.9
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
.-.|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++++.+
T Consensus 26 ~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 26 SLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQE 72 (397)
T ss_pred ccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCcccc
Confidence 358999987641 2333 368999999999665544 4689999999754
No 144
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=32.95 E-value=19 Score=45.00 Aligned_cols=54 Identities=24% Similarity=0.687 Sum_probs=37.9
Q ss_pred CCCcccccCCCccccCCCC---eeecCCCC--------------------CCCcccchH-HHH----Hh--hcCccCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGE---VFVACSEC--------------------NFPICKSCF-DDE----IK--EGRKACLRC 54 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~---~fvaC~eC--------------------~FpvCr~Cy-eye----~~--eG~~~CP~C 54 (980)
...+|.-|=.++..-.+=. +|..|-.| .||.|-.|- ||+ |+ .-.-+||.|
T Consensus 100 D~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~C 179 (750)
T COG0068 100 DAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPKC 179 (750)
T ss_pred chhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCccc
Confidence 3457888887765433322 69999999 499999997 454 32 222689999
Q ss_pred CCCC
Q 002020 55 ASPY 58 (980)
Q Consensus 55 kt~Y 58 (980)
+-.|
T Consensus 180 GP~~ 183 (750)
T COG0068 180 GPHL 183 (750)
T ss_pred CCCe
Confidence 9888
No 145
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=32.60 E-value=30 Score=41.20 Aligned_cols=8 Identities=38% Similarity=1.065 Sum_probs=3.3
Q ss_pred cCCCCCCC
Q 002020 50 ACLRCASP 57 (980)
Q Consensus 50 ~CP~Ckt~ 57 (980)
.||+|++.
T Consensus 237 ~CpRC~~~ 244 (419)
T PRK15103 237 VCPRCHTK 244 (419)
T ss_pred CCCCCCCc
Confidence 34444433
No 146
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.55 E-value=11 Score=43.46 Aligned_cols=45 Identities=22% Similarity=0.600 Sum_probs=35.3
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
+|-||-+=+-.+-. - -||.-.+|+.|.--..++||.-||-|++..
T Consensus 45 ~c~icl~llk~tmt-----t-keClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTMT-----T-KECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhcc-----c-HHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 56677655433211 1 289999999999999999999999999988
No 147
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=32.54 E-value=26 Score=27.56 Aligned_cols=31 Identities=26% Similarity=0.625 Sum_probs=22.7
Q ss_pred CCCCCCCc--ccccCCCccccCCCCeeecCCCCCC
Q 002020 1 MMQSGAPV--CNTCGDQVGFTANGEVFVACSECNF 33 (980)
Q Consensus 1 ~~~~~~~~--C~iCgd~vg~~~~G~~fvaC~eC~F 33 (980)
|....+.. |.+||.......||- .-|.+|+-
T Consensus 1 ~e~~~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 1 MEWMRGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred CcccccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 44566776 999999988888886 44666663
No 148
>PHA02926 zinc finger-like protein; Provisional
Probab=31.60 E-value=48 Score=36.29 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=38.5
Q ss_pred CCCCcccccCCCccccC--CCCeeecCCCCCCCcccchHHHHHhh-----cCccCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTA--NGEVFVACSECNFPICKSCFDDEIKE-----GRKACLRCASPYD 59 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~--~G~~fvaC~eC~FpvCr~Cyeye~~e-----G~~~CP~Ckt~Y~ 59 (980)
+....|.||=+.+.... +..-|.-=..|+-.-|..|..--++. +...||.|+++++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 45678999999975432 22223333357888999999766653 2467999999873
No 149
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.42 E-value=32 Score=28.04 Aligned_cols=44 Identities=25% Similarity=0.637 Sum_probs=30.1
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHh-----hcCccCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIK-----EGRKACLRCA 55 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~-----eG~~~CP~Ck 55 (980)
+|++||. ..+++..+.|..|+--+=..|.....+ ++.=.||.|+
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5899999 566778999999986666666643322 3355666664
No 150
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=30.87 E-value=14 Score=36.01 Aligned_cols=25 Identities=24% Similarity=0.526 Sum_probs=16.9
Q ss_pred ecCCCCCCCcccchHHHHHhhcCccCCCCCCC
Q 002020 26 VACSECNFPICKSCFDDEIKEGRKACLRCASP 57 (980)
Q Consensus 26 vaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~ 57 (980)
.-|+.|+ ++++..+-.-.||+|+.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 71 AWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEcccCC-------CEEecCCcCccCcCCCCC
Confidence 4466666 455665566679999975
No 151
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=29.91 E-value=36 Score=34.85 Aligned_cols=43 Identities=40% Similarity=0.835 Sum_probs=25.6
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHH-HhhcCccCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE-IKEGRKACLRCAS 56 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye-~~eG~~~CP~Ckt 56 (980)
.+..|..||+- -||+|.+|+= -|+-=.+.+ ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg~--------rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGGA--------RFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCCc--------CeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 35578888865 7999988841 122211111 1233478999986
No 152
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=29.66 E-value=63 Score=28.37 Aligned_cols=48 Identities=27% Similarity=0.649 Sum_probs=35.0
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcC-ccCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGR-KACLRCA 55 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~-~~CP~Ck 55 (980)
..+|-.||-.|-..|++-.| +|..|+=-+-.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 57999999999888877665 68899944444444 3357676 6799886
No 153
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=29.54 E-value=60 Score=38.33 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=43.4
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchh
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLT 300 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~lt 300 (980)
..+||+-.|+|+-.| |--....+||.|+|.-.=+.=-..+.+.||++.+.+
T Consensus 120 ~~dlp~TsviITfHN---EARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dpe 170 (559)
T KOG3738|consen 120 KVDLPPTSVIITFHN---EARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPE 170 (559)
T ss_pred ecCCCCceEEEEecc---HHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChH
Confidence 367999999999999 999999999999999765544667899999998743
No 154
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=29.44 E-value=26 Score=43.32 Aligned_cols=43 Identities=30% Similarity=0.645 Sum_probs=26.1
Q ss_pred CCCCcccccCCCccccCCCCe-----------eec-----CCCCCCCcccchHHHHHhhc
Q 002020 4 SGAPVCNTCGDQVGFTANGEV-----------FVA-----CSECNFPICKSCFDDEIKEG 47 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~-----------fva-----C~eC~FpvCr~Cyeye~~eG 47 (980)
....+|.|||.+-.+..+-.. |.+ =.-=.||||..|| -...+|
T Consensus 196 ~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~-~~l~~G 254 (593)
T PF09484_consen 196 KKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCA-LKLEEG 254 (593)
T ss_pred CCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHH-HHHHHH
Confidence 455689999998433333221 222 0123799999999 445566
No 155
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.28 E-value=16 Score=27.85 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=10.1
Q ss_pred HHHhhcCccCCCCCCC
Q 002020 42 DEIKEGRKACLRCASP 57 (980)
Q Consensus 42 ye~~eG~~~CP~Ckt~ 57 (980)
|+-++....||.|+.+
T Consensus 11 y~~~~~~~~CP~Cg~~ 26 (33)
T cd00350 11 YDGEEAPWVCPVCGAP 26 (33)
T ss_pred ECCCcCCCcCcCCCCc
Confidence 3333356788888875
No 156
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.09 E-value=34 Score=37.08 Aligned_cols=40 Identities=20% Similarity=0.546 Sum_probs=26.4
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+.
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~~ 44 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLPA 44 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCcC
Confidence 467999998763321 24788887543322 35899999764
No 157
>TIGR02921 PEP_integral PEP-CTERM family integral membrane protein. Members of this protein family, found in three different species so far, have a PEP-CTERM sequence at the carboxyl-terminus (see model TIGR02595), but are unusual among PEP-CTERM proteins in having multiple predicted transmembrane segments. The function is unknown. It is proposed that a member of the EpsH family, to be designated exosortase (see TIGR02602), recognizes and cleaves PEP-CTERM proteins in a manner analogous to the cleavage of LPXTG proteins by sortase (see Haft, et al., 2006).
Probab=29.07 E-value=1.2e+03 Score=29.42 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=17.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhCCc
Q 002020 758 YPFTSLPLIAYCSLPAICLLTGKF 781 (980)
Q Consensus 758 ypl~sl~~liy~llPil~LltG~~ 781 (980)
-+-++++.+.++.+|.+|...|..
T Consensus 46 ~~~~a~~~i~liaip~i~~~ig~~ 69 (952)
T TIGR02921 46 PIEFALALILLIAIPAICIGIGGT 69 (952)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcch
Confidence 345677777888899998877654
No 158
>PRK08359 transcription factor; Validated
Probab=29.05 E-value=21 Score=37.58 Aligned_cols=34 Identities=21% Similarity=0.641 Sum_probs=21.7
Q ss_pred CCCCCCCcccccCCCcccc-----CCCCeeecCCCCCCCcccchH-HH
Q 002020 1 MMQSGAPVCNTCGDQVGFT-----ANGEVFVACSECNFPICKSCF-DD 42 (980)
Q Consensus 1 ~~~~~~~~C~iCgd~vg~~-----~~G~~fvaC~eC~FpvCr~Cy-ey 42 (980)
|.....-.|.|||.+|--. .+|-. .-||..|| .|
T Consensus 1 m~~~~~~~CEiCG~~i~g~~~~v~ieGae--------l~VC~~Ca~k~ 40 (176)
T PRK08359 1 MAKAKPRYCEICGAEIRGPGHRIRIEGAE--------LLVCDRCYEKY 40 (176)
T ss_pred CCCCCcceeecCCCccCCCCeEEEEcCeE--------EehHHHHHHHh
Confidence 4444555699999997422 24543 34678888 66
No 159
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=28.93 E-value=23 Score=30.83 Aligned_cols=26 Identities=31% Similarity=0.975 Sum_probs=17.8
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCc
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPI 35 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 35 (980)
+|.-||.+-.+. .| +.+.|.||||.|
T Consensus 22 iCgdC~~en~lk-~~-D~irCReCG~RI 47 (62)
T KOG3507|consen 22 ICGDCGQENTLK-RG-DVIRCRECGYRI 47 (62)
T ss_pred Eecccccccccc-CC-CcEehhhcchHH
Confidence 677787764332 34 357899999976
No 160
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=28.89 E-value=19 Score=41.85 Aligned_cols=51 Identities=22% Similarity=0.576 Sum_probs=36.8
Q ss_pred CCCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHH-hhcCccCCCCCCCCC
Q 002020 2 MQSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEI-KEGRKACLRCASPYD 59 (980)
Q Consensus 2 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~-~eG~~~CP~Ckt~Y~ 59 (980)
|++.-+.|.||.++ |-+ |-=.-||--.|-.|..-=+ ++++|-||=|.-..+
T Consensus 365 MgsTFeLCKICaen-----dKd--vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK 416 (563)
T KOG1785|consen 365 MGSTFELCKICAEN-----DKD--VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK 416 (563)
T ss_pred ccchHHHHHHhhcc-----CCC--cccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence 77788899999876 111 2233468899999995444 465799999987664
No 161
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=26.78 E-value=36 Score=29.24 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=15.3
Q ss_pred ccchHHHHHhhcCc-----cCCCCCCCC
Q 002020 36 CKSCFDDEIKEGRK-----ACLRCASPY 58 (980)
Q Consensus 36 Cr~Cyeye~~eG~~-----~CP~Ckt~Y 58 (980)
|+-|-..-.+.+.| .||+||+--
T Consensus 7 C~~CnKlLa~a~~~~yle~KCPrCK~vN 34 (60)
T COG4416 7 CAKCNKLLAEAEGQAYLEKKCPRCKEVN 34 (60)
T ss_pred hHHHhHHHHhcccceeeeecCCccceee
Confidence 77787655443334 799999753
No 162
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=26.64 E-value=52 Score=36.78 Aligned_cols=67 Identities=33% Similarity=0.520 Sum_probs=43.5
Q ss_pred hHhHhhhhhccCCCCCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcch----hhHHHHhhH
Q 002020 233 YIDRLSARFEREGEPSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAML----TFETLVQTA 308 (980)
Q Consensus 233 ~~d~L~~~~~~~~~~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~l----tf~al~E~~ 308 (980)
-+|.|++-.+.=.....+|.|=|||+ +||+..++.++++ ||+|=..+.+ |+|++..
T Consensus 158 ELeKm~~~Vd~i~~~~~~~~~PlFIs-vDPeRD~~~~~~e-----------------Y~~eF~pkllGLTGT~eqvk~-- 217 (280)
T KOG2792|consen 158 ELEKMSAVVDEIEAKPGLPPVPLFIS-VDPERDSVEVVAE-----------------YVSEFHPKLLGLTGTTEQVKQ-- 217 (280)
T ss_pred HHHHHHHHHHHHhccCCCCccceEEE-eCcccCCHHHHHH-----------------HHHhcChhhhcccCCHHHHHH--
Confidence 35566555543223456777878886 6999999988887 4454444433 4666654
Q ss_pred HhhhhhhhhhhhcCCCCCCccccccc
Q 002020 309 DFARKWVPFCKKFSIEPRAPEFYFSQ 334 (980)
Q Consensus 309 ~fa~~WvpfCkk~~iepr~Pe~YF~~ 334 (980)
.||+|- .|||.
T Consensus 218 --------vak~yR-------VYfs~ 228 (280)
T KOG2792|consen 218 --------VAKKYR-------VYFST 228 (280)
T ss_pred --------HHHHhE-------Eeecc
Confidence 467774 78887
No 163
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=26.31 E-value=25 Score=32.03 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=33.3
Q ss_pred hhhccCchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEe
Q 002020 616 FEKTFGLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYC 695 (980)
Q Consensus 616 ~~~~fG~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~ 695 (980)
....+|-...+.++.+.++||+++.. .|| |- ||.++..|+..+|.++...
T Consensus 16 ~~~~~Gg~~~~~~~~f~~vnGfde~f--------------------------~gW--G~--ED~Dl~~Rl~~~g~~~~~~ 65 (78)
T PF02709_consen 16 YPNFFGGVFAISREDFEKVNGFDERF--------------------------WGW--GG--EDDDLYNRLWKAGLKIVRV 65 (78)
T ss_dssp STT---SEEEEEHHHHHHTTSS-SS---------------------------TSC--SS--HHHHHHHHHHHTT---B-S
T ss_pred CCCeeEEEEEEeHHHHHHcCCCCccc--------------------------ccc--Cc--cHHHHHHHHHHcCCeEEec
Confidence 35567888899999999999997521 133 33 9999999999999987775
Q ss_pred c
Q 002020 696 M 696 (980)
Q Consensus 696 ~ 696 (980)
+
T Consensus 66 ~ 66 (78)
T PF02709_consen 66 P 66 (78)
T ss_dssp S
T ss_pred C
Confidence 4
No 164
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=25.79 E-value=86 Score=26.11 Aligned_cols=45 Identities=27% Similarity=0.706 Sum_probs=28.9
Q ss_pred cccccCCCccccCCCCeeecCCCCCCC---cccchHHHHHhh-cCccCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFP---ICKSCFDDEIKE-GRKACLRCA 55 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~Fp---vCr~Cyeye~~e-G~~~CP~Ck 55 (980)
+|.||-+ +-+++..++.|| .|.-. |=+.|.+.=+++ ++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 334444457788 56432 446787655544 467899996
No 165
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=25.42 E-value=43 Score=27.68 Aligned_cols=33 Identities=24% Similarity=0.573 Sum_probs=24.2
Q ss_pred cccccCCCccccCCCCeeecCCCCC-CCcccchHHHHHh
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECN-FPICKSCFDDEIK 45 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCr~Cyeye~~ 45 (980)
.|.+||-++.. +..-|-.+. +-+|.+||+..+-
T Consensus 2 ~C~~Cg~D~t~-----vryh~~~~~~~dLC~~CF~~G~f 35 (45)
T cd02336 2 HCFTCGNDCTR-----VRYHNLKAKKYDLCPSCYQEGRF 35 (45)
T ss_pred cccCCCCccCc-----eEEEecCCCccccChHHHhCcCC
Confidence 69999999742 555566665 9999999965443
No 166
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=25.39 E-value=19 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.894 Sum_probs=6.6
Q ss_pred hhcCccCCCCCCC
Q 002020 45 KEGRKACLRCASP 57 (980)
Q Consensus 45 ~eG~~~CP~Ckt~ 57 (980)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444555555544
No 167
>PRK14973 DNA topoisomerase I; Provisional
Probab=25.35 E-value=41 Score=44.02 Aligned_cols=48 Identities=21% Similarity=0.486 Sum_probs=30.5
Q ss_pred CcccccCCCcccc--CCCCeeecCCCCCCCcccchHHHHHh-hc-----CccCCCCCCC
Q 002020 7 PVCNTCGDQVGFT--ANGEVFVACSECNFPICKSCFDDEIK-EG-----RKACLRCASP 57 (980)
Q Consensus 7 ~~C~iCgd~vg~~--~~G~~fvaC~eC~FpvCr~Cyeye~~-eG-----~~~CP~Ckt~ 57 (980)
..|..||.++... ..|. |..|. +||-|+-.+..... .| .+.||.|+.|
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4699999875432 3454 99996 66778755433211 12 3679999975
No 168
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=25.23 E-value=47 Score=28.56 Aligned_cols=26 Identities=35% Similarity=0.837 Sum_probs=17.0
Q ss_pred CcccccCCCccccC--CCCeeecCCCCCC
Q 002020 7 PVCNTCGDQVGFTA--NGEVFVACSECNF 33 (980)
Q Consensus 7 ~~C~iCgd~vg~~~--~G~~fvaC~eC~F 33 (980)
..|..||.+|-+.. .|+ .|-|.+|+.
T Consensus 3 ~~CP~CG~~iev~~~~~Ge-iV~Cp~CGa 30 (54)
T TIGR01206 3 FECPDCGAEIELENPELGE-LVICDECGA 30 (54)
T ss_pred cCCCCCCCEEecCCCccCC-EEeCCCCCC
Confidence 37999999987743 355 446655543
No 169
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=24.96 E-value=48 Score=28.90 Aligned_cols=33 Identities=24% Similarity=0.692 Sum_probs=23.9
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKS 38 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~ 38 (980)
.+|.|..||.....+.++.. .-|..|++..=||
T Consensus 27 TSq~C~~CG~~~~~~~~~r~-~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRV-FTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccce-EEcCCCCCEECcH
Confidence 57899999998777445554 4577888876654
No 170
>PRK12438 hypothetical protein; Provisional
Probab=24.91 E-value=1.4e+03 Score=30.74 Aligned_cols=47 Identities=19% Similarity=0.320 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCceeehHHHHHHHHHHHHhhe
Q 002020 910 FGKVFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVW 956 (980)
Q Consensus 910 ~g~l~~~~Wvv~~l~Pfl~gL~gR~~~~p~~v~~~s~~l~~~~~~lw 956 (980)
-++.+.++-.++..+-|+.+++.|+-|.|.+.+..-++.++++..+|
T Consensus 258 Pa~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 258 PAKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666766767888776665554554444343
No 171
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.74 E-value=21 Score=25.86 Aligned_cols=15 Identities=33% Similarity=0.667 Sum_probs=10.4
Q ss_pred HHhhcCccCCCCCCC
Q 002020 43 EIKEGRKACLRCASP 57 (980)
Q Consensus 43 e~~eG~~~CP~Ckt~ 57 (980)
+..++..-||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 346667778888775
No 172
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=24.51 E-value=47 Score=30.06 Aligned_cols=30 Identities=30% Similarity=0.810 Sum_probs=24.2
Q ss_pred CCCcccccCC--Cccc-cCCCCeeecCCCCCCC
Q 002020 5 GAPVCNTCGD--QVGF-TANGEVFVACSECNFP 34 (980)
Q Consensus 5 ~~~~C~iCgd--~vg~-~~~G~~fvaC~eC~Fp 34 (980)
.|-+|.-|+. .|+. .+||...+-|-+|+|.
T Consensus 7 AGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 7 AGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred cCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 5778999984 4554 6899999999999984
No 173
>PRK14873 primosome assembly protein PriA; Provisional
Probab=24.14 E-value=56 Score=41.24 Aligned_cols=11 Identities=36% Similarity=0.643 Sum_probs=8.2
Q ss_pred CccCCCCCCCC
Q 002020 48 RKACLRCASPY 58 (980)
Q Consensus 48 ~~~CP~Ckt~Y 58 (980)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 46889888764
No 174
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=23.75 E-value=82 Score=36.05 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCCCCCceEEE
Q 002020 441 NALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQVGRDVCYV 490 (980)
Q Consensus 441 Nallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~~g~~v~~V 490 (980)
|.+++ .+..+|++++|.|+ +|.+++-+....+..--....+.+||
T Consensus 120 NvAr~----~a~T~~v~~~DvD~-~ps~~l~~~l~~~~~~~~~~~~~a~V 164 (317)
T PF13896_consen 120 NVARS----GARTDYVFLLDVDF-LPSPGLYEKLLRFARRNIDKSKTAFV 164 (317)
T ss_pred HHHHH----hcCcceEEEeccee-eeCcchHHHHHHHhhhhccCCceEEE
Confidence 55554 35789999999999 57777666655555332233457776
No 175
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=23.60 E-value=31 Score=27.07 Aligned_cols=13 Identities=15% Similarity=0.514 Sum_probs=11.0
Q ss_pred cCCCCCCCCCCCc
Q 002020 50 ACLRCASPYDENL 62 (980)
Q Consensus 50 ~CP~Ckt~Y~e~~ 62 (980)
.||.|++.|+-+|
T Consensus 4 ~CP~C~~~f~v~~ 16 (37)
T PF13719_consen 4 TCPNCQTRFRVPD 16 (37)
T ss_pred ECCCCCceEEcCH
Confidence 5999999997655
No 176
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=23.35 E-value=41 Score=26.37 Aligned_cols=31 Identities=26% Similarity=0.737 Sum_probs=22.7
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHH
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDD 42 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyey 42 (980)
+...|..|++.. .-.-|.+|.-+||..|...
T Consensus 2 ~~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~ 32 (42)
T PF00643_consen 2 QEPKCPEHPEEP-------LSLFCEDCNEPLCSECTVS 32 (42)
T ss_dssp SSSB-SSTTTSB-------EEEEETTTTEEEEHHHHHT
T ss_pred cCccCccCCccc-------eEEEecCCCCccCccCCCC
Confidence 345677777542 5577999999999999954
No 177
>PF15050 SCIMP: SCIMP protein
Probab=23.07 E-value=98 Score=30.80 Aligned_cols=40 Identities=20% Similarity=0.460 Sum_probs=26.6
Q ss_pred cccchhHHHHHHHHHHHHHHHH-----HHHHHHHcCCCCCeEeccC
Q 002020 818 DLWRNEQFWVIGGVSAHLFAVF-----QGFLKMLAGLDTNFTVTSK 858 (980)
Q Consensus 818 ~wWr~e~~W~I~~vsa~l~av~-----~allk~L~g~~~~F~VTpK 858 (980)
+|||+ -||+|.++...+..+. -.+.+.+.+.+.+++++.-
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 69995 7999887754443332 2334566677889988853
No 178
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=22.83 E-value=29 Score=43.95 Aligned_cols=54 Identities=24% Similarity=0.670 Sum_probs=35.8
Q ss_pred CCCcccccCCCccccCC---CCeeecCCCC--------------------CCCcccchH-HHH----Hhh--cCccCCCC
Q 002020 5 GAPVCNTCGDQVGFTAN---GEVFVACSEC--------------------NFPICKSCF-DDE----IKE--GRKACLRC 54 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~---G~~fvaC~eC--------------------~FpvCr~Cy-eye----~~e--G~~~CP~C 54 (980)
.-.+|.-|=.++---.| +=+|.-|..| .|+.|.+|. ||. |+- ---+||.|
T Consensus 67 D~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~~C 146 (711)
T TIGR00143 67 DVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACPRC 146 (711)
T ss_pred chhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCCCC
Confidence 34578888888733222 5589999999 478888887 443 221 12478888
Q ss_pred CCCC
Q 002020 55 ASPY 58 (980)
Q Consensus 55 kt~Y 58 (980)
+=++
T Consensus 147 gp~l 150 (711)
T TIGR00143 147 GPQL 150 (711)
T ss_pred CcEE
Confidence 8777
No 179
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=21.94 E-value=29 Score=34.08 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=15.0
Q ss_pred ecCCCCCCCcccchHHHHHhhcC-ccCCCCCCCC
Q 002020 26 VACSECNFPICKSCFDDEIKEGR-KACLRCASPY 58 (980)
Q Consensus 26 vaC~eC~FpvCr~Cyeye~~eG~-~~CP~Ckt~Y 58 (980)
.-|++|+ ++++..+-. ..||+|+.+-
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~ 98 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKN 98 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCc
Confidence 3466665 334444322 3599999874
No 180
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=21.83 E-value=26 Score=34.18 Aligned_cols=25 Identities=20% Similarity=0.525 Sum_probs=15.0
Q ss_pred ecCCCCCCCcccchHHHHHhhcC-ccCCCCCCC
Q 002020 26 VACSECNFPICKSCFDDEIKEGR-KACLRCASP 57 (980)
Q Consensus 26 vaC~eC~FpvCr~Cyeye~~eG~-~~CP~Ckt~ 57 (980)
.-|+.|+ ++++..+-. -.||+|+.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~ 96 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGD 96 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCC
Confidence 3466665 244444443 569999976
No 181
>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]
Probab=21.51 E-value=51 Score=38.47 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=26.1
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCC-CcEEEEec--CCCc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVD-KVSCYVSD--DGAA 297 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~-kl~~yvsD--Dg~~ 297 (980)
-++|++....+ +..-+++-|++.+...+=.. +| .--| ||.+
T Consensus 191 eGiD~y~gs~~----~arkva~~i~~~~~~~v~eS~~L--vg~d~~tgk~ 234 (355)
T COG1499 191 EGIDIYLGSRN----AARKVARFILEKFGGEVKESEKL--VGRDRFTGKR 234 (355)
T ss_pred cceEEEEeccc----hHHHHHHHHHHHcCcEEEeccee--EEEecCCCce
Confidence 47899988886 45666777777665555432 44 4444 7765
No 182
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=21.49 E-value=17 Score=31.56 Aligned_cols=8 Identities=50% Similarity=1.539 Sum_probs=4.0
Q ss_pred CCcccchH
Q 002020 33 FPICKSCF 40 (980)
Q Consensus 33 FpvCr~Cy 40 (980)
||||-.|-
T Consensus 44 ~PVCP~Ck 51 (58)
T PF11238_consen 44 FPVCPECK 51 (58)
T ss_pred CCCCcCHH
Confidence 55554443
No 183
>PRK07219 DNA topoisomerase I; Validated
Probab=21.05 E-value=50 Score=42.67 Aligned_cols=50 Identities=26% Similarity=0.686 Sum_probs=28.4
Q ss_pred CCcccccCCCcccc--CCCCeeecCCCCCCCcccchHHHHH----hhcCccCCCCCCCC
Q 002020 6 APVCNTCGDQVGFT--ANGEVFVACSECNFPICKSCFDDEI----KEGRKACLRCASPY 58 (980)
Q Consensus 6 ~~~C~iCgd~vg~~--~~G~~fvaC~eC~FpvCr~Cyeye~----~eG~~~CP~Ckt~Y 58 (980)
...|..||+.+... ..|. |..|. +||-|+--...-. ..-...||.|+.+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l 743 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPL 743 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeE
Confidence 34677787664432 3455 88885 5666653321111 12346899998765
No 184
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=20.91 E-value=42 Score=35.88 Aligned_cols=33 Identities=30% Similarity=0.596 Sum_probs=21.2
Q ss_pred CCCCCCCcccccCCC-c---cccC-CCCeeecCCCCCC
Q 002020 1 MMQSGAPVCNTCGDQ-V---GFTA-NGEVFVACSECNF 33 (980)
Q Consensus 1 ~~~~~~~~C~iCgd~-v---g~~~-~G~~fvaC~eC~F 33 (980)
|+..-.-.|..||++ + -+.+ -+++.+-|+|||.
T Consensus 1 m~~~iy~~Cp~Cg~eev~hEVik~~g~~~lvrC~eCG~ 38 (201)
T COG1326 1 MTEEIYIECPSCGSEEVSHEVIKERGREPLVRCEECGT 38 (201)
T ss_pred CcceEEEECCCCCcchhhHHHHHhcCCceEEEccCCCc
Confidence 444555679999943 3 1233 4457888999974
No 185
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=20.90 E-value=58 Score=33.19 Aligned_cols=41 Identities=24% Similarity=0.649 Sum_probs=29.5
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCccc-chHHHHHhhcCccCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICK-SCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr-~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.++|.||-..+- ---|..|.+|-|. +||.-- +.=|||+|.=
T Consensus 5 t~tC~ic~e~~~-------KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve 46 (157)
T KOG2857|consen 5 TTTCVICLESEI-------KYKCPKCSVPYCSLPCFKIH-----KSTPQCETVE 46 (157)
T ss_pred eeeehhhhcchh-------hccCCCCCCccccchhhhhc-----cCCccccccC
Confidence 678888877532 2579999999996 898433 3368888864
No 186
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=20.72 E-value=43 Score=27.94 Aligned_cols=37 Identities=27% Similarity=0.667 Sum_probs=29.6
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHh
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIK 45 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~ 45 (980)
.+.|.+|+...+...+. .-|.-|+--+|..|-.+...
T Consensus 2 ~~~C~~C~~~F~~~~rk---~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 2 ASSCMGCGKPFTLTRRR---HHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcCcccCccccCCccc---cccCcCcCCcChHHcCCeee
Confidence 46899999988874433 57889999999999977755
No 187
>PTZ00293 thymidine kinase; Provisional
Probab=20.57 E-value=45 Score=36.18 Aligned_cols=35 Identities=23% Similarity=0.750 Sum_probs=22.8
Q ss_pred CcccccCCCccc----cCCCCe-eecCCCCCCCcccchHH
Q 002020 7 PVCNTCGDQVGF----TANGEV-FVACSECNFPICKSCFD 41 (980)
Q Consensus 7 ~~C~iCgd~vg~----~~~G~~-fvaC~eC~FpvCr~Cye 41 (980)
.+|..||.+--. .++|+. .+.=+|=--++||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 589999988433 234444 33333545789999995
No 188
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.55 E-value=47 Score=40.44 Aligned_cols=9 Identities=22% Similarity=0.611 Sum_probs=6.3
Q ss_pred EEEEecCCC
Q 002020 254 DFFVSTVDP 262 (980)
Q Consensus 254 DvfV~t~dp 262 (980)
-|+|-|++|
T Consensus 373 ~viiqt~~p 381 (505)
T TIGR00595 373 QVIIQTYNP 381 (505)
T ss_pred EEEEEeCCC
Confidence 356778887
No 189
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=20.37 E-value=65 Score=24.02 Aligned_cols=28 Identities=36% Similarity=0.952 Sum_probs=20.7
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccch
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSC 39 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~C 39 (980)
.|.+|+.++ +|..|--|++|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 588997764 3433788999999887665
No 190
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=20.05 E-value=1e+02 Score=25.41 Aligned_cols=43 Identities=23% Similarity=0.675 Sum_probs=27.2
Q ss_pred ccccCCCccccCCCCeeecCCCCCC---CcccchHHHHHh-hcCccCCCC
Q 002020 9 CNTCGDQVGFTANGEVFVACSECNF---PICKSCFDDEIK-EGRKACLRC 54 (980)
Q Consensus 9 C~iCgd~vg~~~~G~~fvaC~eC~F---pvCr~Cyeye~~-eG~~~CP~C 54 (980)
|.||-+. .++++.+.-|| .|.= -|=+.|.+.-++ .++..|+.|
T Consensus 1 CrIC~~~--~~~~~~li~pC-~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEG--EEEDEPLISPC-RCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE---SSSS-EE-SS-S-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCc--CCCCCceeccc-ccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788776 33344788899 7876 777889977754 677889887
Done!