Query 002020
Match_columns 980
No_of_seqs 426 out of 2017
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:59:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 5.2E-50 1.8E-54 491.8 52.4 491 173-931 65-571 (802)
2 1weo_A Cellulose synthase, cat 100.0 3.5E-34 1.2E-38 254.5 7.0 59 1-59 11-69 (93)
3 2z86_A Chondroitin synthase; G 99.5 2E-13 6.8E-18 162.2 19.0 128 247-499 89-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.4 2.2E-12 7.5E-17 148.3 20.9 117 247-482 25-144 (472)
5 2d7i_A Polypeptide N-acetylgal 99.4 3.7E-12 1.3E-16 150.9 18.0 115 248-481 109-224 (570)
6 3bcv_A Putative glycosyltransf 99.4 3.4E-12 1.2E-16 131.8 14.3 110 249-481 3-112 (240)
7 2ffu_A Ppgalnact-2, polypeptid 99.4 3.7E-12 1.3E-16 147.9 14.5 113 247-481 62-174 (501)
8 1qg8_A Protein (spore coat pol 99.3 9.1E-13 3.1E-17 137.6 7.5 124 251-497 1-129 (255)
9 2z86_A Chondroitin synthase; G 99.2 5.2E-11 1.8E-15 141.4 14.3 124 248-498 372-496 (625)
10 3ckj_A Putative uncharacterize 98.9 7.4E-09 2.5E-13 114.1 12.7 49 249-302 46-94 (329)
11 4fix_A UDP-galactofuranosyl tr 98.9 7E-09 2.4E-13 125.2 13.4 48 247-298 176-224 (657)
12 3l7i_A Teichoic acid biosynthe 98.8 5.3E-10 1.8E-14 135.9 0.0 112 250-482 1-112 (729)
13 2fy7_A Beta-1,4-galactosyltran 98.5 1.1E-07 3.9E-12 103.7 7.6 78 621-728 176-263 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 98.1 1.1E-05 3.8E-10 91.5 12.4 51 434-492 165-216 (387)
15 2nxv_A ATP synthase subunits r 97.7 0.00038 1.3E-08 73.4 13.7 45 437-490 63-112 (249)
16 1e4u_A Transcriptional repress 96.7 0.0015 5.1E-08 57.8 4.9 55 5-62 10-64 (78)
17 1fo8_A Alpha-1,3-mannosyl-glyc 95.9 0.016 5.3E-07 64.9 8.7 44 250-298 1-44 (343)
18 2bo4_A Mannosylglycerate synth 95.2 0.077 2.6E-06 60.4 11.2 46 434-479 74-119 (397)
19 2zu9_A Mannosyl-3-phosphoglyce 94.2 0.2 6.7E-06 57.0 11.2 38 435-475 144-181 (394)
20 2wvl_A Mannosyl-3-phosphoglyce 93.2 0.18 6.1E-06 56.6 8.4 42 250-300 52-93 (391)
21 1vyx_A ORF K3, K3RING; zinc-bi 91.6 0.17 5.9E-06 42.4 4.3 54 1-59 1-58 (60)
22 2ct2_A Tripartite motif protei 89.9 0.31 1.1E-05 42.6 4.7 62 5-69 14-77 (88)
23 2xeu_A Ring finger protein 4; 89.4 0.15 5E-06 41.8 2.0 57 5-63 2-59 (64)
24 1g25_A CDK-activating kinase a 89.4 0.37 1.3E-05 40.0 4.5 56 6-63 3-58 (65)
25 2d8s_A Cellular modulator of i 89.1 0.51 1.7E-05 41.8 5.4 54 4-60 13-70 (80)
26 1t1h_A Gspef-atpub14, armadill 86.9 0.47 1.6E-05 40.7 3.7 50 5-61 7-56 (78)
27 2ecy_A TNF receptor-associated 86.5 0.59 2E-05 38.9 4.1 51 6-63 15-65 (66)
28 3ng2_A RNF4, snurf, ring finge 85.9 0.53 1.8E-05 39.4 3.5 58 4-63 8-66 (71)
29 2ysl_A Tripartite motif-contai 85.8 0.67 2.3E-05 39.0 4.1 50 6-62 20-71 (73)
30 2ea6_A Ring finger protein 4; 83.0 0.79 2.7E-05 37.9 3.3 53 5-59 14-67 (69)
31 2ecv_A Tripartite motif-contai 82.9 1.8 6.1E-05 37.1 5.6 50 6-62 19-73 (85)
32 2ecm_A Ring finger and CHY zin 82.8 1.4 4.9E-05 34.8 4.6 51 4-58 3-53 (55)
33 2ckl_B Ubiquitin ligase protei 82.7 0.77 2.6E-05 45.3 3.6 47 8-60 56-102 (165)
34 1iym_A EL5; ring-H2 finger, ub 82.5 1.4 4.8E-05 35.0 4.4 50 5-58 4-53 (55)
35 2ecw_A Tripartite motif-contai 81.0 2 6.7E-05 36.9 5.1 50 6-62 19-73 (85)
36 1chc_A Equine herpes virus-1 r 80.8 2.4 8.2E-05 35.1 5.5 51 2-59 1-51 (68)
37 2c2l_A CHIP, carboxy terminus 78.8 1.4 4.9E-05 46.3 4.2 49 6-61 208-256 (281)
38 2ect_A Ring finger protein 126 78.8 2.4 8.3E-05 36.1 5.0 54 5-63 14-67 (78)
39 3fl2_A E3 ubiquitin-protein li 78.5 1.5 5.1E-05 41.1 3.8 47 7-60 53-99 (124)
40 2f42_A STIP1 homology and U-bo 77.8 1.5 5.2E-05 44.6 3.9 48 7-61 107-154 (179)
41 3lrq_A E3 ubiquitin-protein li 77.2 1.8 6.1E-05 39.3 3.8 49 7-61 23-71 (100)
42 2kiz_A E3 ubiquitin-protein li 76.6 3.2 0.00011 34.5 5.0 51 5-60 13-63 (69)
43 3vk6_A E3 ubiquitin-protein li 75.2 1.6 5.4E-05 40.5 2.8 26 34-59 23-48 (101)
44 2djb_A Polycomb group ring fin 73.9 3.6 0.00012 34.7 4.7 51 6-63 15-65 (72)
45 3hct_A TNF receptor-associated 72.3 2.6 8.8E-05 39.2 3.7 49 7-62 19-67 (118)
46 2kr4_A Ubiquitin conjugation f 71.3 2.9 9.9E-05 37.0 3.5 47 6-60 14-60 (85)
47 4ap4_A E3 ubiquitin ligase RNF 70.5 2 6.9E-05 39.9 2.5 57 5-63 71-128 (133)
48 2kre_A Ubiquitin conjugation f 70.5 2.7 9.3E-05 38.5 3.3 47 7-61 30-76 (100)
49 1jm7_A BRCA1, breast cancer ty 70.1 4.6 0.00016 36.7 4.8 49 7-62 22-72 (112)
50 2y43_A E3 ubiquitin-protein li 67.5 4 0.00014 36.5 3.7 48 7-61 23-70 (99)
51 2ecn_A Ring finger protein 141 66.4 1.8 6E-05 36.2 1.0 49 5-62 14-62 (70)
52 1rmd_A RAG1; V(D)J recombinati 65.8 4.3 0.00015 37.4 3.7 49 7-62 24-72 (116)
53 3hcs_A TNF receptor-associated 65.5 3.6 0.00012 40.6 3.3 49 7-62 19-67 (170)
54 3l11_A E3 ubiquitin-protein li 65.3 1.8 6.2E-05 40.0 1.0 46 8-60 17-62 (115)
55 4ap4_A E3 ubiquitin ligase RNF 64.8 3.6 0.00012 38.1 3.0 60 2-63 3-63 (133)
56 1zbd_B Rabphilin-3A; G protein 64.6 2.9 0.0001 40.6 2.3 36 4-42 53-89 (134)
57 3nw0_A Non-structural maintena 64.4 4.7 0.00016 42.7 4.0 50 6-61 180-230 (238)
58 1wgm_A Ubiquitin conjugation f 64.2 5.1 0.00017 36.5 3.7 48 6-61 22-70 (98)
59 1z6u_A NP95-like ring finger p 63.9 5 0.00017 39.2 3.9 48 7-61 79-126 (150)
60 1v87_A Deltex protein 2; ring- 61.1 6.7 0.00023 35.9 4.0 55 6-60 25-94 (114)
61 2egp_A Tripartite motif-contai 61.1 2.9 9.8E-05 35.6 1.4 51 5-62 11-67 (79)
62 2l0b_A E3 ubiquitin-protein li 60.5 4.7 0.00016 35.8 2.8 49 6-59 40-88 (91)
63 2yur_A Retinoblastoma-binding 60.4 9.8 0.00034 32.2 4.7 48 6-59 15-63 (74)
64 1x4j_A Ring finger protein 38; 60.2 5.5 0.00019 33.7 3.1 51 5-60 22-72 (75)
65 3ztg_A E3 ubiquitin-protein li 60.1 5.6 0.00019 35.0 3.2 47 6-58 13-60 (92)
66 2ep4_A Ring finger protein 24; 59.5 7.9 0.00027 32.5 3.9 51 5-60 14-64 (74)
67 2ckl_A Polycomb group ring fin 58.8 6 0.0002 36.0 3.2 49 6-61 15-63 (108)
68 2zet_C Melanophilin; complex, 58.7 1.1 3.9E-05 44.4 -1.8 48 5-54 67-114 (153)
69 3vth_A Hydrogenase maturation 58.2 2.6 8.8E-05 51.8 0.8 53 5-58 110-193 (761)
70 2ecl_A Ring-box protein 2; RNF 57.8 8.3 0.00029 33.5 3.8 57 4-61 13-77 (81)
71 2ea5_A Cell growth regulator w 57.7 12 0.00042 31.5 4.8 46 3-60 12-58 (68)
72 1jm7_B BARD1, BRCA1-associated 57.1 7.1 0.00024 36.2 3.5 45 7-60 23-67 (117)
73 2ysj_A Tripartite motif-contai 56.6 9.8 0.00033 30.9 3.9 42 6-54 20-63 (63)
74 2csy_A Zinc finger protein 183 56.1 12 0.00041 32.1 4.6 46 6-59 15-60 (81)
75 3h0g_L DNA-directed RNA polyme 55.8 6.6 0.00023 33.4 2.7 27 7-35 22-48 (63)
76 4ayc_A E3 ubiquitin-protein li 54.7 7 0.00024 37.4 3.0 45 8-60 55-99 (138)
77 1m3v_A FLIN4, fusion of the LI 53.2 13 0.00044 34.7 4.6 58 4-63 3-84 (122)
78 2y1n_A E3 ubiquitin-protein li 52.7 10 0.00034 43.0 4.4 52 4-62 330-381 (389)
79 2d8t_A Dactylidin, ring finger 51.2 4.3 0.00015 34.1 0.8 50 5-62 14-63 (71)
80 2csz_A Synaptotagmin-like prot 47.6 9.2 0.00031 33.7 2.3 38 4-44 23-61 (76)
81 4g9i_A Hydrogenase maturation 47.1 6.2 0.00021 48.6 1.6 54 5-58 105-188 (772)
82 2ct0_A Non-SMC element 1 homol 47.0 14 0.00047 32.2 3.4 51 6-62 15-66 (74)
83 1bor_A Transcription factor PM 44.6 18 0.00063 28.9 3.6 46 4-60 4-49 (56)
84 3ttc_A HYPF, transcriptional r 43.5 6.8 0.00023 47.3 1.2 53 5-58 16-99 (657)
85 2xjy_A Rhombotin-2; oncoprotei 42.4 19 0.00066 33.6 3.9 55 6-61 2-79 (131)
86 2ecg_A Baculoviral IAP repeat- 41.3 19 0.00064 30.6 3.3 42 7-60 26-68 (75)
87 1m4f_A Hepcidin; strand-loop-s 39.5 2.3 7.9E-05 30.1 -2.1 23 32-56 3-25 (26)
88 3dpl_R Ring-box protein 1; ubi 39.2 22 0.00076 32.8 3.7 53 5-59 36-100 (106)
89 3knv_A TNF receptor-associated 39.1 7 0.00024 37.8 0.3 45 7-58 32-76 (141)
90 3ky9_A Proto-oncogene VAV; cal 38.8 14 0.00047 43.7 2.8 36 4-42 527-563 (587)
91 2vje_A E3 ubiquitin-protein li 38.3 14 0.00049 30.6 2.1 47 5-59 7-56 (64)
92 2ecj_A Tripartite motif-contai 38.0 29 0.001 27.2 3.8 43 5-54 14-58 (58)
93 1wim_A KIAA0161 protein; ring 37.9 18 0.00061 32.0 2.8 49 5-57 4-61 (94)
94 2yu4_A E3 SUMO-protein ligase 37.6 26 0.00087 31.3 3.8 49 6-60 7-63 (94)
95 2xqn_T Testin, TESS; metal-bin 36.9 28 0.00096 32.3 4.1 53 6-61 3-76 (126)
96 2cup_A Skeletal muscle LIM-pro 36.7 25 0.00084 31.3 3.5 55 4-61 3-79 (101)
97 2rgt_A Fusion of LIM/homeobox 34.0 41 0.0014 33.0 5.0 56 4-62 4-79 (169)
98 1twf_L ABC10-alpha, DNA-direct 33.9 17 0.00059 31.4 1.9 24 8-33 30-53 (70)
99 2ku3_A Bromodomain-containing 33.7 10 0.00035 32.7 0.5 51 4-56 14-65 (71)
100 1tot_A CREB-binding protein; z 32.9 11 0.00038 30.6 0.5 31 6-42 6-37 (52)
101 3v43_A Histone acetyltransfera 32.7 30 0.001 32.0 3.5 52 6-57 5-64 (112)
102 2bay_A PRE-mRNA splicing facto 32.7 29 0.001 28.7 3.1 50 7-63 4-53 (61)
103 2lri_C Autoimmune regulator; Z 32.2 20 0.0007 30.4 2.1 46 4-56 10-58 (66)
104 1mm2_A MI2-beta; PHD, zinc fin 31.8 20 0.00068 29.8 1.9 47 4-57 7-56 (61)
105 1rut_X Flinc4, fusion protein 31.0 32 0.0011 34.4 3.7 56 4-61 3-82 (188)
106 1pft_A TFIIB, PFTFIIBN; N-term 30.5 9.9 0.00034 30.2 -0.2 20 45-64 21-40 (50)
107 1wge_A Hypothetical protein 26 30.1 16 0.00056 32.6 1.1 27 8-35 32-62 (83)
108 3a43_A HYPD, hydrogenase nicke 28.3 9 0.00031 37.3 -1.0 11 48-58 107-117 (139)
109 2jr7_A DPH3 homolog; DESR1, CS 28.2 13 0.00044 33.8 0.1 26 9-35 26-55 (89)
110 1yop_A KTI11P; zinc finger, me 27.4 14 0.00049 33.0 0.3 26 9-35 26-55 (83)
111 2gmg_A Hypothetical protein PF 27.0 17 0.00058 33.9 0.7 26 27-58 69-94 (105)
112 1pft_A TFIIB, PFTFIIBN; N-term 26.9 36 0.0012 26.9 2.6 32 2-35 1-34 (50)
113 2js4_A UPF0434 protein BB2007; 26.4 5.2 0.00018 34.7 -2.7 30 24-58 7-36 (70)
114 3htk_C E3 SUMO-protein ligase 25.7 25 0.00084 37.9 1.8 50 6-61 181-233 (267)
115 3lqh_A Histone-lysine N-methyl 25.4 32 0.0011 35.0 2.4 54 5-58 1-64 (183)
116 2vje_B MDM4 protein; proto-onc 24.8 38 0.0013 27.9 2.4 46 6-59 7-55 (63)
117 1f62_A Transcription factor WS 24.8 26 0.0009 27.7 1.4 45 8-56 2-49 (51)
118 1a7i_A QCRP2 (LIM1); LIM domai 24.3 30 0.001 29.5 1.8 49 4-55 5-74 (81)
119 2jtn_A LIM domain-binding prot 23.8 91 0.0031 30.8 5.5 54 5-61 59-132 (182)
120 2ksl_A U1-agatoxin-TA1A; insec 23.2 2.7 9.2E-05 32.8 -4.4 25 6-30 20-48 (51)
121 4ic3_A E3 ubiquitin-protein li 23.2 37 0.0013 28.7 2.1 41 7-59 25-66 (74)
122 2l5u_A Chromodomain-helicase-D 23.2 27 0.00092 29.0 1.2 46 4-56 9-57 (61)
123 1x61_A Thyroid receptor intera 22.4 91 0.0031 25.7 4.4 39 4-42 3-63 (72)
124 2l43_A N-teminal domain from h 22.1 19 0.00066 32.2 0.1 52 5-58 24-76 (88)
125 1x4l_A Skeletal muscle LIM-pro 20.1 73 0.0025 26.3 3.3 15 4-18 3-17 (72)
126 1dl6_A Transcription factor II 20.0 64 0.0022 26.7 2.8 33 27-64 13-46 (58)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=5.2e-50 Score=491.75 Aligned_cols=491 Identities=23% Similarity=0.360 Sum_probs=375.4
Q ss_pred hhH-HHHHHHHHHHHHHHHHhcCCCCc-----hhhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHhhhhhccCCC
Q 002020 173 YRT-VIIVRLIILGLFFHYRVTHPVDS-----ALGLWLTSVICEIWFAFSWVLDQFPKWSPVDRETYIDRLSARFEREGE 246 (980)
Q Consensus 173 ~R~-~~~~~l~~l~~~l~~R~~~~~~~-----~~~lwl~~~~~E~~f~~~wil~~~~kw~pv~r~~~~d~L~~~~~~~~~ 246 (980)
.|+ ++++.+++.+.|++||++.+++. ++++|++++++|+++.+.|++..+..+.|..|...++ ..
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQ 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CC
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CC
Confidence 455 45566777889999999987663 2456888999999999999999999999998865432 23
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
++++|.|+|+||||| |++.++.+|+.|++++|||.+++.++|+|||+++-|.+.
T Consensus 136 ~~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 567899999999999 999999999999999999999999999999998854432
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
.+|+.+++.. +.++ .++.++++.
T Consensus 190 ----------------~d~~i~~~~~---~~~~----~l~~~~~~~---------------------------------- 212 (802)
T 4hg6_A 190 ----------------PDPELAQKAQ---ERRR----ELQQLCREL---------------------------------- 212 (802)
T ss_dssp ----------------SSHHHHHHHH---HHHH----HHHHHHHHH----------------------------------
T ss_pred ----------------CCHHHHHHHH---hhhH----HHHHHHHhc----------------------------------
Confidence 1122222211 1111 122222111
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCC
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGR 485 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~ 485 (980)
.+.|+.|++ +++.||||+|.+++. ++++||+++|||++ +.|++|++++.+| .||+
T Consensus 213 ------------~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp~--- 268 (802)
T 4hg6_A 213 ------------GVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDPD--- 268 (802)
T ss_dssp ------------TCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSSS---
T ss_pred ------------CcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHHhcCCC---
Confidence 177899987 678899999999995 68999999999996 5899999999998 5886
Q ss_pred ceEEEccCccccCCCcc-------chhhhhhhhhhhhhccccccCCCccccccccchhhhhhccCCCCCCCCCCCCCCCC
Q 002020 486 DVCYVQFPQRFDGIDKS-------DRYANRNIVFFDVNMKGLDGIQGPMYVGTGCMFNRQALYGYGPPTMPTLPKTSSSC 558 (980)
Q Consensus 486 ~v~~VQ~PQ~F~n~d~~-------dr~~n~~~vFfdi~~~gldg~qgp~yvGTg~~~RR~ALyg~~p~~~~~~~~~~~~~ 558 (980)
+++||+|+.+.|.++. .++.+++..||...+.+.+.+++++++|++++|||+++
T Consensus 269 -v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al------------------ 329 (802)
T 4hg6_A 269 -LFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL------------------ 329 (802)
T ss_dssp -CCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH------------------
T ss_pred -eEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHH------------------
Confidence 8999999999997742 44567788999999999999999999999999998887
Q ss_pred CCCCCCCCCCCCCCCCcchhhHhhhhhhhhHHHHhhhhhhccccchhhHhHhhhhhhhhhccCchHHHHHHHHHhcCCCC
Q 002020 559 SWCGCCSCCCPSKKPSKDLSEAYRDAKREELDAAIFNLKEIDNYDDYERSMLISQMSFEKTFGLSSVFIESTLMENGGVP 638 (980)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~~~~Sal~e~GG~~ 638 (980)
+++||++
T Consensus 330 -------------------------------------------------------------------------~~vGgf~ 336 (802)
T 4hg6_A 330 -------------------------------------------------------------------------DEAGGFA 336 (802)
T ss_dssp -------------------------------------------------------------------------HHHTTCC
T ss_pred -------------------------------------------------------------------------HHcCCcC
Confidence 3567775
Q ss_pred CCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCCceecccCCCHHHHHHHHH
Q 002020 639 DSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRPAFKGSAPINLSDRLHQVL 718 (980)
Q Consensus 639 ~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra~~~G~aP~tl~~~l~QR~ 718 (980)
+ ++++||.+++++++++||+++|+++ +.+++.+|+|+.++++||.
T Consensus 337 ~---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~--~~~~~~~p~t~~~~~~Qr~ 381 (802)
T 4hg6_A 337 G---------------------------------ETITEDAETALEIHSRGWKSLYIDR--AMIAGLQPETFASFIQQRG 381 (802)
T ss_dssp C---------------------------------SSSSHHHHHHHHHHTTTCCEEECCC--CCEEECCCCSHHHHHHHHH
T ss_pred C---------------------------------CCcchHHHHHHHHHHcCCeEEEecC--CEEEecCCCCHHHHHHHHH
Confidence 4 6788999999999999999999954 7899999999999999999
Q ss_pred HhhchhHHHHHhhcCccccccCCCCCChhhHHHHHhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHH
Q 002020 719 RWALGSVEIFLSRHCPLWYGFGGGRLKLLQRLAYINTIVYPFTSLPLIAYCSLPAICLLTGKFIIPTLSNLASVLFLGLF 798 (980)
Q Consensus 719 RWa~G~lQil~sk~~Pl~~~~~~grL~~~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iiP~~s~~~~~~fl~lf 798 (980)
||++|.+|+++. ++|++ .+.+++.||+.|+...++++.+++.++++++|+++++++..+++.....+..+++.++
T Consensus 382 RW~~G~~q~l~~-~~pl~----~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~ 456 (802)
T 4hg6_A 382 RWATGMMQMLLL-KNPLF----RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYL 456 (802)
T ss_dssp HHHHHHHHHHHH-SCTTS----CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHH-hCccc----cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHH
Confidence 999999999975 47775 2459999999999999999999999999999999999998877654333322222222
Q ss_pred H-HHHHHHHHhhhccCcccccccchhHHHHHHHHHHHHHHHHHHHHH-HHcCCCCCeEeccCCcccccccceeeeccccc
Q 002020 799 L-SIIATSVLELRWSGVTIEDLWRNEQFWVIGGVSAHLFAVFQGFLK-MLAGLDTNFTVTSKAADDLEFGELYIIKWTTL 876 (980)
Q Consensus 799 l-s~~~~~lLe~~w~G~s~~~wWr~e~~W~I~~vsa~l~av~~allk-~L~g~~~~F~VTpKg~~~~~~~~ly~f~ws~l 876 (980)
+ .+.+...+ +.+.. ..|| ++.++.+.+. + .+.+++. .+++++.+|.||+|+...+.. + + + .+
T Consensus 457 l~~~~~~~~~---~~~~r-~~~~-~~l~~~~~~~----~-~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~---~-~-~-~~ 520 (802)
T 4hg6_A 457 AVSFLVQNAL---FARQR-WPLV-SEVYEVAQAP----Y-LARAIVTTLLRPRSARFAVTAKDETLSEN---Y-I-S-PI 520 (802)
T ss_dssp HHHHHHHHHH---HTTTS-CTTH-HHHHHHHHHH----H-HHHHHHHHHHSTTCCCCCCCCCCCCCSSC---C-B-C-TT
T ss_pred HHHHHHHHHH---hcCcH-HHHH-HHHHHHHHHH----H-HHHHHHHHHhCCCCCcceECCCCcccccc---c-h-h-hH
Confidence 2 11122222 11111 1233 3444433322 2 2333333 356788999999999865432 1 1 3 47
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcCccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 002020 877 LIPPTSLIIVNMVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVIVHLYPFLKGLM 931 (980)
Q Consensus 877 ~iP~~~Llllnlvaiv~gi~r~~~~~~~~~~~~~g~l~~~~Wvv~~l~Pfl~gL~ 931 (980)
+.|++++++++++++++|+++....+. +..+.+++++|+++|++.+..++.
T Consensus 521 ~~p~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 521 YRPLLFTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC----ccchhhhhhHHHHHHHHHHHHHHH
Confidence 889999999999999999998875442 345678999999999999998885
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=3.5e-34 Score=254.53 Aligned_cols=59 Identities=41% Similarity=1.103 Sum_probs=57.8
Q ss_pred CCCCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 1 MMQSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 1 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
||++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+||||||||+
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 78899999999999999999999999999999999999999999999999999999995
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.51 E-value=2e-13 Score=162.24 Aligned_cols=128 Identities=20% Similarity=0.233 Sum_probs=97.8
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
+..+|.|+|+|||+| |+ ..+.+|+.|+++.+||. .+.++|+|||+++-|.+.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~-------------------- 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE-------------------- 143 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------------
T ss_pred cccCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------------
Confidence 457899999999999 74 88999999999999986 789999999998622211100
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
|.
T Consensus 144 -------------------------------~~----------------------------------------------- 145 (625)
T 2z86_A 144 -------------------------------FE----------------------------------------------- 145 (625)
T ss_dssp -------------------------------TT-----------------------------------------------
T ss_pred -------------------------------hh-----------------------------------------------
Confidence 00
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCCCCC
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQVGR 485 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~~g~ 485 (980)
.-+.+.|+.+++ +.+.||+|+|.+++. +.|+||+++|+|+++ .|++|.+++..|. +|.
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~~-~~~~l~~~~~~~~~~~~--- 204 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMAP-NPLWVQSYMELLAVDDN--- 204 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEEE-CTTHHHHHHHHHHHCTT---
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCCC-CHHHHHHHHHHHhcCCc---
Confidence 002377877654 345799999999985 689999999999975 8999999999885 565
Q ss_pred ceEEEccCccccCC
Q 002020 486 DVCYVQFPQRFDGI 499 (980)
Q Consensus 486 ~v~~VQ~PQ~F~n~ 499 (980)
++.|+..+.+++.
T Consensus 205 -~~~~g~~~~~~~~ 217 (625)
T 2z86_A 205 -VALIGPRKYIDTS 217 (625)
T ss_dssp -EEEECCEEEECCT
T ss_pred -eEEEEeeeeccCc
Confidence 7888877666543
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.45 E-value=2.2e-12 Score=148.31 Aligned_cols=117 Identities=17% Similarity=0.111 Sum_probs=91.4
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcch-hhHHHHhhHHhhhhhhhhhhhcCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAML-TFETLVQTADFARKWVPFCKKFSIEP 325 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~l-tf~al~E~~~fa~~WvpfCkk~~iep 325 (980)
+.++|.|.|+|||+| |+...+.+||.|+++.+||.....|+|.|||+++- |.+.|.
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~-------------------- 81 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLE-------------------- 81 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHH--------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHH--------------------
Confidence 467999999999999 88789999999999999997677999999999861 222111
Q ss_pred CCcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeec
Q 002020 326 RAPEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLG 405 (980)
Q Consensus 326 r~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~ 405 (980)
+|.+
T Consensus 82 -------------------------------~~~~--------------------------------------------- 85 (472)
T 1xhb_A 82 -------------------------------SYVK--------------------------------------------- 85 (472)
T ss_dssp -------------------------------HHHH---------------------------------------------
T ss_pred -------------------------------HHHH---------------------------------------------
Confidence 1110
Q ss_pred CCCCCCCcCCCCC-cEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCC
Q 002020 406 HSGACDIEGNELP-RLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQ 482 (980)
Q Consensus 406 ~~g~~d~~g~~lP-~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~ 482 (980)
..| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. .+|++|.+++..+. +|.
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~~ 144 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDRR 144 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCTT
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeE-eCccHHHHHHHHHHhCCC
Confidence 123 377777766444 99999999985 68999999999996 58999999998875 454
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.39 E-value=3.7e-12 Score=150.91 Aligned_cols=115 Identities=17% Similarity=0.064 Sum_probs=90.2
Q ss_pred CCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchh-hHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 248 SELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLT-FETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 248 ~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~lt-f~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
+.+|.|.|+|||+| |+...+.+||.|+++..||.....|+|.|||+++-| .+.|.
T Consensus 109 ~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~--------------------- 164 (570)
T 2d7i_A 109 ETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE--------------------- 164 (570)
T ss_dssp SSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH---------------------
T ss_pred CCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHH---------------------
Confidence 56899999999999 887899999999999999976668999999998743 11111
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
+ +++
T Consensus 165 ---------------------------------~-------~~~------------------------------------ 168 (570)
T 2d7i_A 165 ---------------------------------D-------YMA------------------------------------ 168 (570)
T ss_dssp ---------------------------------H-------HHT------------------------------------
T ss_pred ---------------------------------H-------HHH------------------------------------
Confidence 1 100
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCC
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDP 481 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp 481 (980)
..|++.++..+++. .+++|+|.+++. +.|+||+.||+|..+ +|++|.+++..+.+.
T Consensus 169 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ---------LFPSVRILRTKKRE-----GLIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIARN 224 (570)
T ss_dssp ---------TSTTEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHHC
T ss_pred ---------hCCeEEEEECCCCC-----CHHHHHHHHHHh----cCCCEEEEEcCCccc-cccHHHHHHHHHHhC
Confidence 11347777766543 499999999985 689999999999975 899999999988653
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.37 E-value=3.4e-12 Score=131.78 Aligned_cols=110 Identities=17% Similarity=0.181 Sum_probs=84.4
Q ss_pred CCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCc
Q 002020 249 ELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAP 328 (980)
Q Consensus 249 ~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~P 328 (980)
..|.|.|+|||+| ++ ..+.++|.|+++++|| .+.++|.|||+++-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH----------------------
Confidence 4689999999999 65 6789999999999998 478899999998743322111
Q ss_pred ccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCC
Q 002020 329 EFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSG 408 (980)
Q Consensus 329 e~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g 408 (980)
|.+ +
T Consensus 55 -----------------------------~~~----------~------------------------------------- 58 (240)
T 3bcv_A 55 -----------------------------YAA----------Q------------------------------------- 58 (240)
T ss_dssp -----------------------------HHH----------H-------------------------------------
T ss_pred -----------------------------HHh----------h-------------------------------------
Confidence 110 0
Q ss_pred CCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCC
Q 002020 409 ACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDP 481 (980)
Q Consensus 409 ~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp 481 (980)
.|++.|+.. + ...+++|.|.+++. ++|+||+.+|+|.++ .|++|.+.+..+.++
T Consensus 59 --------~~~i~~i~~-~-----n~G~~~a~N~g~~~----a~g~~i~~lD~Dd~~-~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHK-K-----NAGLGMACNSGLDV----ATGEYVAFCDSDDYV-DSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEEC-C-----CCCHHHHHHHHHHH----CCSSEEEECCTTCCC-CTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEEC-C-----CCChHHHHHHHHHH----cCCCEEEEECCCCcC-CHHHHHHHHHHHHhc
Confidence 123666643 2 23599999999995 689999999999975 899999999988764
No 7
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.35 E-value=3.7e-12 Score=147.90 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=89.5
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCC
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPR 326 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr 326 (980)
+.++|.|.|+|||+| |+...+.+||.|+++..||.....|+|.|||+++-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 457999999999999 8866899999999999999766789999999986221100
Q ss_pred CcccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecC
Q 002020 327 APEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGH 406 (980)
Q Consensus 327 ~Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~ 406 (980)
+
T Consensus 117 -----------------------------------------~-------------------------------------- 117 (501)
T 2ffu_A 117 -----------------------------------------L-------------------------------------- 117 (501)
T ss_dssp -----------------------------------------G--------------------------------------
T ss_pred -----------------------------------------H--------------------------------------
Confidence 0
Q ss_pred CCCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCC
Q 002020 407 SGACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDP 481 (980)
Q Consensus 407 ~g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp 481 (980)
...|++.|+..+++. .+++|+|.+++. +.|+||+.+|+|..+ +|++|.+++..+.+.
T Consensus 118 --------~~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~~~-~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 118 --------GKIEKVRVLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHCEC-NEHWLEPLLERVAED 174 (501)
T ss_dssp --------GGBTTEEEEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCHHHHHHHHHHC
T ss_pred --------hcCCCEEEEECCCCc-----CHHHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhC
Confidence 002347777776643 389999999985 689999999999965 799999999888653
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.34 E-value=9.1e-13 Score=137.57 Aligned_cols=124 Identities=13% Similarity=0.203 Sum_probs=92.0
Q ss_pred ceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCccc
Q 002020 251 AAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPEF 330 (980)
Q Consensus 251 p~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe~ 330 (980)
|.|.|+|||+| ++ ..+.+||.|+++++|| .+.++|.|||+++-|.+.+.+ +
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~-------~---------------- 51 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP-------F---------------- 51 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG-------G----------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH-------H----------------
Confidence 67999999999 65 6889999999999998 578899999998733322111 0
Q ss_pred ccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCCC
Q 002020 331 YFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGAC 410 (980)
Q Consensus 331 YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~~ 410 (980)
. .
T Consensus 52 ----------------------------~---------------------------------------------~----- 53 (255)
T 1qg8_A 52 ----------------------------L---------------------------------------------N----- 53 (255)
T ss_dssp ----------------------------G---------------------------------------------G-----
T ss_pred ----------------------------h---------------------------------------------h-----
Confidence 0 0
Q ss_pred CCcCCCCCcEEEEecccCCCC----CCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc-CCCCCC
Q 002020 411 DIEGNELPRLVYVSREKRPGY----QHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM-DPQVGR 485 (980)
Q Consensus 411 d~~g~~lP~lvYvsRekrpg~----~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~-Dp~~g~ 485 (980)
-|++.|+..+. ++. ....+++|+|.+++. ++|+||+.+|+|.++ .|++|.+++..|. +|+
T Consensus 54 ------~~~i~~i~~~~-~~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~~~--- 118 (255)
T 1qg8_A 54 ------DNRVRFYQSDI-SGVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDTHPE--- 118 (255)
T ss_dssp ------STTEEEEECCC-CSHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHHCTT---
T ss_pred ------cCCEEEEeccc-ccccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHhCCC---
Confidence 02366776651 000 123599999999984 699999999999975 7999999998885 565
Q ss_pred ceEEEccCcccc
Q 002020 486 DVCYVQFPQRFD 497 (980)
Q Consensus 486 ~v~~VQ~PQ~F~ 497 (980)
+++|.....+.
T Consensus 119 -~~~v~~~~~~~ 129 (255)
T 1qg8_A 119 -KAVIYSASKTY 129 (255)
T ss_dssp -CCEEEEEEEEE
T ss_pred -ceEEEeceEEE
Confidence 77888776654
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.21 E-value=5.2e-11 Score=141.44 Aligned_cols=124 Identities=22% Similarity=0.274 Sum_probs=93.3
Q ss_pred CCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCC
Q 002020 248 SELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRA 327 (980)
Q Consensus 248 ~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~ 327 (980)
...|.|.|+|||+| ++ ..+.++|.|+++++||. +.++|.|||+++-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHHH---------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHHH---------------------
Confidence 45789999999999 64 67899999999999984 78899999998733322111
Q ss_pred cccccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCC
Q 002020 328 PEFYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHS 407 (980)
Q Consensus 328 Pe~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~ 407 (980)
|.+
T Consensus 425 ------------------------------~~~----------------------------------------------- 427 (625)
T 2z86_A 425 ------------------------------HYA----------------------------------------------- 427 (625)
T ss_dssp ------------------------------HHT-----------------------------------------------
T ss_pred ------------------------------HHh-----------------------------------------------
Confidence 000
Q ss_pred CCCCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCc
Q 002020 408 GACDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRD 486 (980)
Q Consensus 408 g~~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~ 486 (980)
..|++.++. ++ ...+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..| .+|+
T Consensus 428 --------~~~~i~~~~-~~-----n~G~~~a~n~g~~~----a~g~~i~~ld~D~~~-~~~~l~~~~~~~~~~~~---- 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QK-----NKGIGSASNTAVRL----CRGFYIGQLDSDDFL-EPDAVELCLDEFRKDLS---- 484 (625)
T ss_dssp --------TCTTEEEEE-EC-----CCCHHHHHHHHHHH----CCSSEEEECCTTCEE-CTTHHHHHHHHHHHCTT----
T ss_pred --------hCCcEEEEe-CC-----CCCHHHHHHHHHHh----cCCCEEEEECCCccc-ChhHHHHHHHHHHhCCC----
Confidence 013366665 33 23599999999984 689999999999975 899999999877 5675
Q ss_pred eEEEccCccccC
Q 002020 487 VCYVQFPQRFDG 498 (980)
Q Consensus 487 v~~VQ~PQ~F~n 498 (980)
+++|.+...+.+
T Consensus 485 ~~~v~~~~~~~~ 496 (625)
T 2z86_A 485 LACVYTTNRNID 496 (625)
T ss_dssp CSEEEEEEEEEC
T ss_pred eeEEEeeeEEEC
Confidence 778887766544
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.88 E-value=7.4e-09 Score=114.08 Aligned_cols=49 Identities=18% Similarity=0.051 Sum_probs=41.3
Q ss_pred CCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhH
Q 002020 249 ELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFE 302 (980)
Q Consensus 249 ~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~ 302 (980)
.-|.|.|+||||| |. ..+..+|.|++++.||. ...++|.|||+++-|.+
T Consensus 46 ~~~~vSViIp~yN---~~-~~l~~~l~sl~~q~~~~-~~eiivVDdgS~D~t~~ 94 (329)
T 3ckj_A 46 AGRTISVVLPALD---EE-DTIGSVIDSISPLVDGL-VDELIVLDSGSTDDTEI 94 (329)
T ss_dssp TTCCEEEEEEESS---CT-TTHHHHHHHHGGGBTTT-BSEEEEEECSCCSSHHH
T ss_pred cCCcEEEEEeeCC---CH-HHHHHHHHHHHHhhCCC-CcEEEEEeCCCCchHHH
Confidence 4589999999999 66 57899999999999993 57789999999884443
No 11
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.88 E-value=7e-09 Score=125.15 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=40.6
Q ss_pred CCCCceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCc-EEEEecCCCcc
Q 002020 247 PSELAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKV-SCYVSDDGAAM 298 (980)
Q Consensus 247 ~~~lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl-~~yvsDDg~~~ 298 (980)
+..-|.|.|+||||| ++ ..+.++|.|+++..|+.++. .|+|.|||+++
T Consensus 176 ~~~~pkVSVVIptYN---~~-~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD 224 (657)
T 4fix_A 176 APGTANIAVGIPTFN---RP-ADCVNALRELTADPLVDQVIGAVIVPDQGERK 224 (657)
T ss_dssp CCSCCCEEEECCBSS---CH-HHHHHHHHHHTTSHHHHTTEEEEEEEECSSSC
T ss_pred CCCCCeEEEEEEecC---CH-HHHHHHHHHHHcCccccCCCCEEEEEECcCCC
Confidence 345689999999998 54 68999999999999966655 88999999875
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.80 E-value=5.3e-10 Score=135.87 Aligned_cols=112 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred CceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchhhHHHHhhHHhhhhhhhhhhhcCCCCCCcc
Q 002020 250 LAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLTFETLVQTADFARKWVPFCKKFSIEPRAPE 329 (980)
Q Consensus 250 lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ltf~al~E~~~fa~~WvpfCkk~~iepr~Pe 329 (980)
.|.|.|+|||+| ++ ..+..+|.|+++++|| .+.++|.|||+++-|.+.+.+
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~----------------------- 51 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDE----------------------- 51 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHH-----------------------
Confidence 378999999999 65 6889999999999999 467899999998743332211
Q ss_pred cccccccccccccCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccCCCCCCCCCCCCCccceeeeecCCCC
Q 002020 330 FYFSQKIDYLKDKIQPSFVKERRAMKRDYEEYKVRINALVAKAQKTPEEGWTMQDGTSWPGNNTRDHPGMIQVFLGHSGA 409 (980)
Q Consensus 330 ~YF~~~~~~~~~~~~~~f~~e~~~mkr~yee~k~ri~~l~~~~~~~p~~~w~m~dgt~w~~~~~~dhp~iiqv~l~~~g~ 409 (980)
|.+ + |+
T Consensus 52 ----------------------------~~~----------~------------------------~~------------ 57 (729)
T 3l7i_A 52 ----------------------------AIK----------D------------------------YD------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------HHH----------h------------------------CC------------
Confidence 000 0 00
Q ss_pred CCCcCCCCCcEEEEecccCCCCCCCCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcCCC
Q 002020 410 CDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMDPQ 482 (980)
Q Consensus 410 ~d~~g~~lP~lvYvsRekrpg~~hh~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~Dp~ 482 (980)
+++.|+..++. ..+++|.|.+++ .++|+||+.+|+|.++ .|++|.+.+..+.++.
T Consensus 58 --------~~i~~i~~~~n-----~G~~~arN~gi~----~A~gdyI~flD~Dd~~-~p~~l~~l~~~l~~~d 112 (729)
T 3l7i_A 58 --------KNIRFIDLDEN-----SGHAHARNIALE----EVETPYFMFLDADDEL-ASYAITFYLEKFNNTD 112 (729)
T ss_dssp -------------------------------------------------------------------------
T ss_pred --------CCEEEEECCCC-----CCHHHHHHHHHH----hccCCEEEEECCCCCC-ChhHHHHHHHHhcCCC
Confidence 12555555442 348999999998 4689999999999975 8999999999887543
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.51 E-value=1.1e-07 Score=103.68 Aligned_cols=78 Identities=17% Similarity=0.175 Sum_probs=54.4
Q ss_pred CchHHHHHHHHHhcCCCCCCCCchhHHHHHHHhcccccccccccccccccccccccchHHHHHHHHhCCcEEEEecCCCC
Q 002020 621 GLSSVFIESTLMENGGVPDSANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSLYCMPLRP 700 (980)
Q Consensus 621 G~s~~~~~Sal~e~GG~~~~~~~~~~~~ea~~v~sC~Ye~~T~wGkevGW~y~sITED~~tg~rL~~~GwrsvY~~p~ra 700 (980)
|...+++++++.++||+++.. .|| + .||.++..|++.+||++.+.++...
T Consensus 176 G~~~~~rr~~f~~vgGFde~~--------------------------~g~--g--~ED~Dl~~Rl~~~G~~i~~~~~~~~ 225 (287)
T 2fy7_A 176 GGVSALSKQQFLTINGFPNNY--------------------------WGW--G--GEDDDIFNRLVFRGMSISRPNAVVG 225 (287)
T ss_dssp CSEEEEEHHHHHHTTSCCSCC--------------------------SSC--S--CHHHHHHHHHHHTTCCCBCCCTTTC
T ss_pred eeEEEEEHHHHHHcCCCCccc--------------------------ccc--c--cchHHHHHHHHHcCCeEEecCcccc
Confidence 444456778888999997510 122 1 4999999999999998884322000
Q ss_pred ----------ceecccCCCHHHHHHHHHHhhchhHHHH
Q 002020 701 ----------AFKGSAPINLSDRLHQVLRWALGSVEIF 728 (980)
Q Consensus 701 ----------~~~G~aP~tl~~~l~QR~RWa~G~lQil 728 (980)
......|+.+..+.+||.||+.+.+..+
T Consensus 226 ~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 226 TTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp EEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred eeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 0123578999999999999999998775
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.12 E-value=1.1e-05 Score=91.47 Aligned_cols=51 Identities=22% Similarity=0.194 Sum_probs=41.0
Q ss_pred CCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhh-cCCCCCCceEEEcc
Q 002020 434 HKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFM-MDPQVGRDVCYVQF 492 (980)
Q Consensus 434 h~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff-~Dp~~g~~v~~VQ~ 492 (980)
..|++|+|.+++. +.|+||+.+|+|....+|++|.+.+..+ .+|+ +.+|..
T Consensus 165 ~G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~----~d~v~G 216 (387)
T 3f1y_A 165 HGKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPG----VRFVKA 216 (387)
T ss_dssp CSHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTT----CCEEEE
T ss_pred CCHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCC----ceEEEE
Confidence 3499999999984 6899999999999624899999999877 4565 555554
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=97.66 E-value=0.00038 Score=73.42 Aligned_cols=45 Identities=7% Similarity=0.084 Sum_probs=38.1
Q ss_pred hhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhcC-----CCCCCceEEE
Q 002020 437 AGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMMD-----PQVGRDVCYV 490 (980)
Q Consensus 437 AGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~D-----p~~g~~v~~V 490 (980)
|.|+|.+++. +.|+||+.||.|.++ ++++|.+.+.++.. |+ ++.|
T Consensus 63 a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~~----vg~v 112 (249)
T 2nxv_A 63 FSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADPK----WLVA 112 (249)
T ss_dssp TTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCTT----EEEE
T ss_pred HHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCCC----eeEE
Confidence 7899999984 689999999999976 79999999988864 76 6655
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.70 E-value=0.0015 Score=57.81 Aligned_cols=55 Identities=24% Similarity=0.685 Sum_probs=44.4
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
....|.||-+.+. .+.-.|.+| .||.-+|+.|+..-.++++..||.|+++|....
T Consensus 10 ~~~~CpICle~~~--~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLE--IDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCC--TTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCc--ccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 3468999999763 233458888 999999999998777778899999999997644
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=95.91 E-value=0.016 Score=64.87 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=37.5
Q ss_pred CceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcc
Q 002020 250 LAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAM 298 (980)
Q Consensus 250 lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~ 298 (980)
|+.+-|+|+|+| -| . +..++.|++++..+.++..++|+|||...
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 355779999998 77 6 99999999999977777889999999764
No 18
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=95.20 E-value=0.077 Score=60.38 Aligned_cols=46 Identities=17% Similarity=-0.061 Sum_probs=34.2
Q ss_pred CCchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHHhhhc
Q 002020 434 HKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFMM 479 (980)
Q Consensus 434 h~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~amcff~ 479 (980)
..|.+|+|+.++..-..++|++|+.+|||-.-.+|+.+.+.+..+.
T Consensus 74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 4699999999921000368999999999984236999999887653
No 19
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=94.21 E-value=0.2 Score=57.00 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=29.2
Q ss_pred CchhhHHHHHHhccccCCCCEEEEecCCCCCCchHHHHHHH
Q 002020 435 KKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAM 475 (980)
Q Consensus 435 ~KAGalNallrvsa~~tng~~il~lD~D~~i~~~~~Lr~am 475 (980)
.|..||=+.+.+.+ ..++++|+.+|||-|+ |..+.+..
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~i--P~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNYI--PGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBSC--HHHHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCCC--HHHHHHHH
Confidence 69999999887531 1289999999999964 77776654
No 20
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=93.24 E-value=0.18 Score=56.64 Aligned_cols=42 Identities=14% Similarity=0.049 Sum_probs=33.0
Q ss_pred CceeEEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCcchh
Q 002020 250 LAAVDFFVSTVDPLKEPPLITANTVLSILALDYPVDKVSCYVSDDGAAMLT 300 (980)
Q Consensus 250 lp~VDvfV~t~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDg~~~lt 300 (980)
+..+.|+||+|| |.. +++-++++.-|. ...+.|.|||..+-|
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s 93 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRF 93 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCCh
Confidence 567999999999 874 357778877765 477899999986633
No 21
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.55 E-value=0.17 Score=42.38 Aligned_cols=54 Identities=30% Similarity=0.670 Sum_probs=40.5
Q ss_pred CCCCCCCcccccCCCccccCCCCeeecCCCCCC---CcccchHHHHHhh-cCccCCCCCCCCC
Q 002020 1 MMQSGAPVCNTCGDQVGFTANGEVFVACSECNF---PICKSCFDDEIKE-GRKACLRCASPYD 59 (980)
Q Consensus 1 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~F---pvCr~Cyeye~~e-G~~~CP~Ckt~Y~ 59 (980)
|....+..|.||-++ .+++++.|| .|.= -|=+.|.+-=+++ |+..||.||++|.
T Consensus 1 ~e~~~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 1 MEDEDVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CTTCSCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 567788899999775 234578888 6743 4557798666664 6789999999984
No 22
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.93 E-value=0.31 Score=42.56 Aligned_cols=62 Identities=15% Similarity=0.309 Sum_probs=42.5
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhc--CccCCCCCCCCCCCcccccCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEG--RKACLRCASPYDENLLDDVGTK 69 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG--~~~CP~Ckt~Y~e~~~dd~~~~ 69 (980)
....|.||-+....+ ....+.- .|+-..|+.|.+--.+.. ...||-|++++..+++..+...
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n 77 (88)
T 2ct2_A 14 EVLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDN 77 (88)
T ss_dssp SCCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEEC
T ss_pred CCCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHH
Confidence 346899998875432 2212333 579999999996655543 5899999999987766554433
No 23
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=89.36 E-value=0.15 Score=41.83 Aligned_cols=57 Identities=25% Similarity=0.605 Sum_probs=41.6
Q ss_pred CCCcccccCCCccccC-CCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 5 GAPVCNTCGDQVGFTA-NGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
+...|.||-+...... +++..+.- .|+--.|+.|.+--.+. +..||-|++++...++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 59 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 59 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCE
T ss_pred CCCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCccce
Confidence 4568999999865543 44444444 67888999999655444 6899999999977654
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=89.35 E-value=0.37 Score=40.01 Aligned_cols=56 Identities=20% Similarity=0.469 Sum_probs=39.1
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
...|.||-+++..+..- .++.= .||--.|+.|.+--..+++..||.|++++..+++
T Consensus 3 ~~~C~IC~~~~~~~~~~-~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~ 58 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSL-KLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58 (65)
T ss_dssp TTCCSTTTTHHHHCSSC-CEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred CCcCCcCCCCccCCCcc-CeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCccccccc
Confidence 46799998843333221 12222 6788899999976656777899999999976553
No 25
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.14 E-value=0.51 Score=41.76 Aligned_cols=54 Identities=19% Similarity=0.529 Sum_probs=40.1
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCC---CCcccchHHHHHhhc-CccCCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECN---FPICKSCFDDEIKEG-RKACLRCASPYDE 60 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~---FpvCr~Cyeye~~eG-~~~CP~Ckt~Y~e 60 (980)
.....|.||-++. ++++.+..+| .|. --+.+.|.+-=++.. +..||.|+++|.-
T Consensus 13 ~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 13 SSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 4567899998764 3445567788 663 679999997666654 4799999999953
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.92 E-value=0.47 Score=40.72 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=38.9
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
..-.|.||.+.. . ++.+. .|+.-.|+.|.+--.+.|+..||.|++++..+
T Consensus 7 ~~~~C~IC~~~~-~----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~ 56 (78)
T 1t1h_A 7 EYFRCPISLELM-K----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLLHA 56 (78)
T ss_dssp SSSSCTTTSCCC-S----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred ccCCCCCccccc-c----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence 345899998753 2 23332 58999999999888888889999999998654
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.52 E-value=0.59 Score=38.87 Aligned_cols=51 Identities=18% Similarity=0.460 Sum_probs=38.4
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
...|.||-+... ++.+ -.|+--.|+.|.+.-.+.++..||.|++++..+++
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 15 KYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVKDKV 65 (66)
T ss_dssp CEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred CCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence 457999987753 1222 26788899999977776778899999999976553
No 28
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=85.92 E-value=0.53 Score=39.42 Aligned_cols=58 Identities=28% Similarity=0.647 Sum_probs=42.3
Q ss_pred CCCCcccccCCCcccc-CCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 4 SGAPVCNTCGDQVGFT-ANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
.....|.||-+.+... .+|+..+.- .|+--.|+.|.+--.+. +..||.|++++...++
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 66 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 66 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccChhhe
Confidence 4456899999986554 345544444 78999999999655544 4799999999976554
No 29
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.80 E-value=0.67 Score=39.05 Aligned_cols=50 Identities=20% Similarity=0.474 Sum_probs=37.1
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHh--hcCccCCCCCCCCCCCc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIK--EGRKACLRCASPYDENL 62 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~--eG~~~CP~Ckt~Y~e~~ 62 (980)
...|.||-+... ++.+ . .|+--.|+.|.+--.+ .++..||.|++++..++
T Consensus 20 ~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 71 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA 71 (73)
T ss_dssp CCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred CCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence 458999998754 2322 2 6788999999976655 35679999999987654
No 30
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.98 E-value=0.79 Score=37.92 Aligned_cols=53 Identities=28% Similarity=0.703 Sum_probs=38.2
Q ss_pred CCCcccccCCCccccC-CCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTA-NGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
....|.||-+...... .++..+.- .|+-..|+.|.+--.+. +..||-|++++.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 4568999999865443 34444443 67889999999655544 689999999864
No 31
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.91 E-value=1.8 Score=37.15 Aligned_cols=50 Identities=20% Similarity=0.610 Sum_probs=36.4
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh-----cCccCCCCCCCCCCCc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE-----GRKACLRCASPYDENL 62 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e-----G~~~CP~Ckt~Y~e~~ 62 (980)
...|.||-+.... + +.. .|+-..|+.|.+--.+. +...||.|++++..++
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----P-LSL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN 73 (85)
T ss_dssp CCCCTTTCSCCSS-----C-BCC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred CCCCCCCCcccCC-----c-eeC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence 4689999987521 2 222 57889999999654443 5789999999997644
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=82.82 E-value=1.4 Score=34.84 Aligned_cols=51 Identities=25% Similarity=0.640 Sum_probs=36.0
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.....|.||-+.+... ++.. ..-.|+-..|+.|.+--.+.. ..||-|++++
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~-~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTS--RVVA-HVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp SCCCSCTTTCCCCCTT--TSCE-EECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCCcCcccChhhcCC--CcCe-EecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 3567899999986432 2222 222478889999996666555 8999999875
No 33
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=82.67 E-value=0.77 Score=45.33 Aligned_cols=47 Identities=23% Similarity=0.615 Sum_probs=37.1
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
.|.||-+.+.. +. .+..|+--.|+.|.+--.+.++..||-|+.++..
T Consensus 56 ~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 56 MCPICLDMLKN-----TM-TTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp BCTTTSSBCSS-----EE-EETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCcccChHhhC-----cC-EeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 79999877431 32 2337899999999988888888999999999853
No 34
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.49 E-value=1.4 Score=34.95 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=34.9
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
....|.||-+++.. |+..+....|+--.|+.|.+--. +.+..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 4 DGVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp CSCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 45689999988643 33333332578889999995433 3468999999875
No 35
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=80.97 E-value=2 Score=36.88 Aligned_cols=50 Identities=24% Similarity=0.629 Sum_probs=36.3
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh-----cCccCCCCCCCCCCCc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE-----GRKACLRCASPYDENL 62 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e-----G~~~CP~Ckt~Y~e~~ 62 (980)
...|.||-+.... + +.. .|+-..|+.|.+.-.+. +...||.|++++..++
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 73 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGN 73 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTC
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHh
Confidence 4589999887532 1 123 47888999999765554 4789999999997644
No 36
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=80.78 E-value=2.4 Score=35.11 Aligned_cols=51 Identities=24% Similarity=0.526 Sum_probs=36.2
Q ss_pred CCCCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 2 MQSGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 2 ~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
|......|.||-+... +..... .|+-..|+.|.+--.+ .+..||-|+++..
T Consensus 1 ~~~~~~~C~IC~~~~~---~~~~~~---~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~ 51 (68)
T 1chc_A 1 MATVAERCPICLEDPS---NYSMAL---PCLHAFCYVCITRWIR-QNPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCCCSSCCSCCC---SCEEET---TTTEEESTTHHHHHHH-HSCSTTTTCCCCC
T ss_pred CCCCCCCCeeCCcccc---CCcEec---CCCCeeHHHHHHHHHh-CcCcCcCCChhhH
Confidence 3456779999998853 122333 4677789999965444 4589999999985
No 37
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=78.82 E-value=1.4 Score=46.29 Aligned_cols=49 Identities=6% Similarity=-0.030 Sum_probs=36.6
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
--.|.||.+- +. ++.+. .||.-.||.|-+--.++++..||.|+++....
T Consensus 208 ~~~c~i~~~~-~~----dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~ 256 (281)
T 2c2l_A 208 YLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256 (281)
T ss_dssp TTBCTTTCSB-CS----SEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred ccCCcCcCCH-hc----CCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence 3579999764 22 34432 38999999999888887767799999999643
No 38
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.75 E-value=2.4 Score=36.14 Aligned_cols=54 Identities=19% Similarity=0.415 Sum_probs=37.2
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
....|.||-+.+.. ++..+.- .|+--.|+.|.+--.+ .+..||-|+.++...+.
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 14 SGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCSCS
T ss_pred CCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCccc
Confidence 35689999988642 2332222 3678899999965554 44799999999976544
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=78.48 E-value=1.5 Score=41.15 Aligned_cols=47 Identities=21% Similarity=0.521 Sum_probs=35.7
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
-.|.||-+..- ++.+ - .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPIT-T-VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEE-e-eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 36999988754 2322 2 6788999999977776666799999999965
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=77.78 E-value=1.5 Score=44.56 Aligned_cols=48 Identities=6% Similarity=-0.016 Sum_probs=36.4
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
-.|.||++- |. ++.+. .||.-.||.|-+--.++++..||.|++++...
T Consensus 107 f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~ 154 (179)
T 2f42_A 107 LCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLTQD 154 (179)
T ss_dssp GBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred hcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCChh
Confidence 479999764 44 36665 48999999999877776545799999998643
No 41
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=77.17 E-value=1.8 Score=39.26 Aligned_cols=49 Identities=24% Similarity=0.545 Sum_probs=38.0
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
-.|.||-+..- .-+.|-.|+--.|+.|..--.+..+..||.|++++..+
T Consensus 23 ~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 71 (100)
T 3lrq_A 23 FRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71 (100)
T ss_dssp TBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred CCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence 47999998753 23455578999999999776776667999999999543
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=76.59 E-value=3.2 Score=34.49 Aligned_cols=51 Identities=20% Similarity=0.395 Sum_probs=35.1
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++...
T Consensus 13 ~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 4568999998763 23333333 47778899999544444 4679999998854
No 43
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=75.22 E-value=1.6 Score=40.46 Aligned_cols=26 Identities=31% Similarity=0.643 Sum_probs=22.3
Q ss_pred CcccchHHHHHhhcCccCCCCCCCCC
Q 002020 34 PICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 34 pvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
-.|-+|++.-.+++.+.||.|+.+..
T Consensus 23 vFCydCa~~~~~~~~k~Cp~C~~~V~ 48 (101)
T 3vk6_A 23 VFCYDCAILHEKKGDKMCPGCSDPVQ 48 (101)
T ss_dssp EEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred cHHHHHHHHHHhccCCCCcCcCCeee
Confidence 56999997778899999999999873
No 44
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.87 E-value=3.6 Score=34.65 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=36.3
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
...|.||-+..-. +.+ -..|+--.|+.|.+.-.+. +..||.|++++..++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 65 (72)
T 2djb_A 15 YILCSICKGYLID-----ATT-ITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQP 65 (72)
T ss_dssp GGSCTTTSSCCSS-----CEE-CSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCS
T ss_pred CCCCCCCChHHHC-----cCE-ECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcccc
Confidence 3579999876432 222 2257888899999766654 6899999999976554
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=72.32 E-value=2.6 Score=39.25 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=37.5
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
-.|.||.+..- ++ +.. .|+=-.|++|.+.-.+.++..||.|+.+...++
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHh
Confidence 47999997653 12 223 689999999998777777679999999986543
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=71.29 E-value=2.9 Score=36.96 Aligned_cols=47 Identities=4% Similarity=-0.258 Sum_probs=35.0
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
.-.|.||++- +.+ +.+. .||.-.||.|-+--.+ ++..||.|++++..
T Consensus 14 ~~~CpI~~~~-m~d----PV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 14 EFRDPLMDTL-MTD----PVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLTE 60 (85)
T ss_dssp TTBCTTTCSB-CSS----EEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCCG
T ss_pred heECcccCch-hcC----CeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCCh
Confidence 4579999763 332 4443 3899999999977766 46899999998864
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=70.52 E-value=2 Score=39.91 Aligned_cols=57 Identities=26% Similarity=0.646 Sum_probs=41.4
Q ss_pred CCCcccccCCCcccc-CCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 5 GAPVCNTCGDQVGFT-ANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
+...|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||-|+++++.+++
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~ 128 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRY 128 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGE
T ss_pred CCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcc
Confidence 456788888775442 345555555 88999999999655554 4799999999977654
No 48
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=70.51 E-value=2.7 Score=38.45 Aligned_cols=47 Identities=4% Similarity=-0.220 Sum_probs=34.8
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
-.|.||.+- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++..+
T Consensus 30 ~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~~ 76 (100)
T 2kre_A 30 FRDPLMDTL-MT----DPVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLTES 76 (100)
T ss_dssp TBCTTTCSB-CS----SEEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCCTT
T ss_pred hCCcCccCc-cc----CCeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCChh
Confidence 478998753 33 24433 2799999999977766 578999999998653
No 49
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=70.13 E-value=4.6 Score=36.67 Aligned_cols=49 Identities=20% Similarity=0.519 Sum_probs=34.8
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh--cCccCCCCCCCCCCCc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE--GRKACLRCASPYDENL 62 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e--G~~~CP~Ckt~Y~e~~ 62 (980)
..|.||-+..- ++.+ . .|+-..|+.|.+--.+. +...||.|++++..++
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~ 72 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS 72 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence 47999988652 1222 2 57889999999665553 4468999999987644
No 50
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=67.46 E-value=4 Score=36.53 Aligned_cols=48 Identities=17% Similarity=0.515 Sum_probs=34.7
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
-.|.||-+.... +.+. -.|+-..|+.|.+--.+ .+..||.|++++..+
T Consensus 23 ~~C~IC~~~~~~-----p~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~~ 70 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMII-PQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTEP 70 (99)
T ss_dssp TBCTTTCSBCSS-----EEEC-TTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCGG
T ss_pred CCcccCChhhCC-----cCEE-CCCCCHhhHHHHHHHHH-CCCCCCCCCCcCChh
Confidence 479999877531 3222 35788999999965555 458999999998653
No 51
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.39 E-value=1.8 Score=36.25 Aligned_cols=49 Identities=18% Similarity=0.510 Sum_probs=35.4
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
....|.||-+.... ...+ |+-..|+.|.+- .-+.+..||-|+++....+
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCCC
Confidence 45689999887432 5555 466689999954 3346799999999986543
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=65.79 E-value=4.3 Score=37.40 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=37.3
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
-.|.||-+..- ++.+ . .|+--.|+.|.+--.+.++..||.|+.++..++
T Consensus 24 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 24 ISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp TBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 47999987752 2333 3 689999999997777776789999999987644
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=65.47 E-value=3.6 Score=40.60 Aligned_cols=49 Identities=24% Similarity=0.443 Sum_probs=38.7
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
-.|.||.+..- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..++
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 67 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcchhh
Confidence 47999998643 23 346 799999999998888777789999999986543
No 54
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=65.34 E-value=1.8 Score=39.96 Aligned_cols=46 Identities=24% Similarity=0.652 Sum_probs=34.8
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
.|.||-+..- ++.+- .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 17 ~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 17 QCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp BCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 6999997753 23222 6788999999966666777899999999853
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=64.81 E-value=3.6 Score=38.13 Aligned_cols=60 Identities=28% Similarity=0.650 Sum_probs=43.0
Q ss_pred CCCCCCcccccCCCcccc-CCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 2 MQSGAPVCNTCGDQVGFT-ANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 2 ~~~~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
|+.+.-.|.||-+..... .+|+..+.- .|+---|+.|.+--.++. ..||.|++++...+.
T Consensus 3 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l 63 (133)
T 4ap4_A 3 MGSGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRY 63 (133)
T ss_dssp --CCSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCE
T ss_pred cCCCCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC-CCCCCCCCcCccccc
Confidence 556777999999886543 245544544 778899999996655554 699999999976554
No 56
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=64.62 E-value=2.9 Score=40.57 Aligned_cols=36 Identities=31% Similarity=0.851 Sum_probs=29.2
Q ss_pred CCCCcccccCCCcccc-CCCCeeecCCCCCCCcccchHHH
Q 002020 4 SGAPVCNTCGDQVGFT-ANGEVFVACSECNFPICKSCFDD 42 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~-~~G~~fvaC~eC~FpvCr~Cyey 42 (980)
.+...|.+|+...|+- ..| ..|..|...||+.|-.+
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~ 89 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVE 89 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEE
T ss_pred CCCccccccCCCcccccCCC---CCCCCCCcccccccCCc
Confidence 4567899999998753 345 78999999999999754
No 57
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=64.42 E-value=4.7 Score=42.69 Aligned_cols=50 Identities=18% Similarity=0.543 Sum_probs=39.3
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHH-HhhcCccCCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE-IKEGRKACLRCASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye-~~eG~~~CP~Ckt~Y~e~ 61 (980)
-..|++|-+-|.. | ..|..|+-..=+.|+.-- +..++..||.|+++...+
T Consensus 180 i~~C~iC~~iv~~---g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSS---C---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhC---C---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 5689999999884 2 789889988889999554 444567999999987543
No 58
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=64.23 E-value=5.1 Score=36.48 Aligned_cols=48 Identities=8% Similarity=-0.034 Sum_probs=35.1
Q ss_pred CCcccccCCCccccCCCCeeecCCCCC-CCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECN-FPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
.-.|.||.+- +.| +.+. .|+ .-.||.|-+--.++ +..||.|++++..+
T Consensus 22 ~~~CpI~~~~-m~d----PV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~ 70 (98)
T 1wgm_A 22 EFLDPIMSTL-MCD----PVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMD 70 (98)
T ss_dssp TTBCTTTCSB-CSS----EEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTT
T ss_pred hcCCcCcccc-ccC----CeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCChh
Confidence 3479999753 432 4332 477 99999999777665 68999999998653
No 59
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=63.93 E-value=5 Score=39.23 Aligned_cols=48 Identities=25% Similarity=0.583 Sum_probs=36.3
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
-.|.||-+..- ++.+ - .|+--.|+.|.+--.+.++..||-|++++..+
T Consensus 79 ~~C~IC~~~~~-----~pv~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT-T-ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp TBCTTTSSBCS-----SEEE-C-TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred CEeecCChhhc-----CCEE-c-CCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 47999988642 2322 2 67888899999777777767999999999654
No 60
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=61.14 E-value=6.7 Score=35.86 Aligned_cols=55 Identities=18% Similarity=0.411 Sum_probs=37.7
Q ss_pred CCcccccCCCccccC-----------CCCeeecCCCCCCCcccchHHHHHh----hcCccCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTA-----------NGEVFVACSECNFPICKSCFDDEIK----EGRKACLRCASPYDE 60 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~-----------~G~~fvaC~eC~FpvCr~Cyeye~~----eG~~~CP~Ckt~Y~e 60 (980)
...|.||-+.+...+ +-...+..-.|+=-.|+.|.+--.+ +++..||-|++.|.+
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 458999988865432 1112332345788899999975555 456799999999954
No 61
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=61.10 E-value=2.9 Score=35.58 Aligned_cols=51 Identities=22% Similarity=0.580 Sum_probs=35.6
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh------cCccCCCCCCCCCCCc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE------GRKACLRCASPYDENL 62 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e------G~~~CP~Ckt~Y~e~~ 62 (980)
....|.||-+..-. +.+ . .|+-..|+.|.+--.+. +...||.|++++..++
T Consensus 11 ~~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~ 67 (79)
T 2egp_A 11 EEVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEH 67 (79)
T ss_dssp CCCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSG
T ss_pred cCCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhh
Confidence 34579999887421 222 2 57888999999644333 3689999999997644
No 62
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=60.55 E-value=4.7 Score=35.78 Aligned_cols=49 Identities=18% Similarity=0.435 Sum_probs=34.1
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
...|.||-+... +|+..+.. -|+=-.|+.|..--. ..+..||-|+.++.
T Consensus 40 ~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 40 EMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMFP 88 (91)
T ss_dssp CSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBSS
T ss_pred CCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccCC
Confidence 457999988753 34444333 377788999995444 45679999998763
No 63
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=60.38 E-value=9.8 Score=32.20 Aligned_cols=48 Identities=21% Similarity=0.528 Sum_probs=34.0
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh-cCccCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE-GRKACLRCASPYD 59 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e-G~~~CP~Ckt~Y~ 59 (980)
...|.||-+..- ++.+ -..|+--.|+.|.+--.++ +...||.|++++.
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 15 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 357999977642 1222 3238999999999766654 4579999999863
No 64
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.22 E-value=5.5 Score=33.71 Aligned_cols=51 Identities=18% Similarity=0.426 Sum_probs=35.2
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
....|.||-+++.. ++..+.- .|+--.|+.|.+--.+. +..||-|+.++..
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45689999988543 3333222 36777899999654444 5799999998754
No 65
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=60.10 E-value=5.6 Score=34.96 Aligned_cols=47 Identities=23% Similarity=0.586 Sum_probs=33.6
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh-cCccCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE-GRKACLRCASPY 58 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e-G~~~CP~Ckt~Y 58 (980)
.-.|.||.+..- +. ..++ .|+-..|+.|.+--.++ +...||.|++++
T Consensus 13 ~~~C~IC~~~~~-~p---~~~~--~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 13 ELLCLICKDIMT-DA---VVIP--CCGNSYCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp TTEETTTTEECS-SC---EECT--TTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CCCCCCCChhhc-Cc---eECC--CCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 457999997542 11 2333 38999999999766544 457999999997
No 66
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.50 E-value=7.9 Score=32.52 Aligned_cols=51 Identities=20% Similarity=0.484 Sum_probs=35.6
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
....|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|+.++.+
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 35689999998543 2333333 47888999999654544 4699999998854
No 67
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=58.80 E-value=6 Score=36.03 Aligned_cols=49 Identities=22% Similarity=0.517 Sum_probs=35.3
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
.-.|.||-+..- ++.+- ..|+-..|+.|..--.+.+ ..||.|++++...
T Consensus 15 ~~~C~IC~~~~~-----~p~~~-~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATTI-IECLHSFCKTCIVRYLETS-KYCPICDVQVHKT 63 (108)
T ss_dssp GTBCTTTSSBCS-----SEEEE-TTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSS
T ss_pred cCCCccCChHHh-----CcCEe-CCCCChhhHHHHHHHHHhC-CcCcCCCcccccc
Confidence 357999988752 23322 2578889999996666554 8999999998653
No 68
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=58.66 E-value=1.1 Score=44.41 Aligned_cols=48 Identities=25% Similarity=0.526 Sum_probs=36.5
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRC 54 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~C 54 (980)
+...|.+|+...|+-. ..-+.|..|...||+.|-.|-++++.=.|--|
T Consensus 67 ~~~~C~~C~~~fg~l~--~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC 114 (153)
T 2zet_C 67 NETHCARCLQPYRLLL--NSRRQCLECSLFVCKSCSHAHPEEQGWLCDPC 114 (153)
T ss_dssp GGTBCTTTCCBGGGCS--SCCEECTTTCCEECGGGEECCSSSSSCEEHHH
T ss_pred CCccchhhcCcccccc--CCCCcCCCCCchhhcccccccCCCCcEeeHHH
Confidence 4678999999977753 23578999999999999977666665555444
No 69
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=58.18 E-value=2.6 Score=51.81 Aligned_cols=53 Identities=25% Similarity=0.731 Sum_probs=39.6
Q ss_pred CCCcccccCCCccccCC---CCeeecCCCCC--------------------CCcccchH-HHH----Hh---hcCccCCC
Q 002020 5 GAPVCNTCGDQVGFTAN---GEVFVACSECN--------------------FPICKSCF-DDE----IK---EGRKACLR 53 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~---G~~fvaC~eC~--------------------FpvCr~Cy-eye----~~---eG~~~CP~ 53 (980)
...+|.-|=.++---.| +-+|+-|-.|| ||.|..|. ||+ |+ +. -+||.
T Consensus 110 D~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp-~aC~~ 188 (761)
T 3vth_A 110 DMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQP-VACFD 188 (761)
T ss_dssp CBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTT-CCCTT
T ss_pred CccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCC-CcCCc
Confidence 44578888877653222 55899999997 99999998 666 22 23 58999
Q ss_pred CCCCC
Q 002020 54 CASPY 58 (980)
Q Consensus 54 Ckt~Y 58 (980)
|+=++
T Consensus 189 CGP~l 193 (761)
T 3vth_A 189 CGPSL 193 (761)
T ss_dssp TSCCE
T ss_pred cCCee
Confidence 99988
No 70
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.76 E-value=8.3 Score=33.47 Aligned_cols=57 Identities=21% Similarity=0.419 Sum_probs=38.5
Q ss_pred CCCCcccccCCCcccc--------CCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFT--------ANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~--------~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
.....|.||-+++... +.++..+.-..|+=--|+.|.+-=.+. ++.||-|++++...
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ 77 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence 3467899999987542 234422222268888999999554444 47999999998543
No 71
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.67 E-value=12 Score=31.54 Aligned_cols=46 Identities=20% Similarity=0.535 Sum_probs=33.0
Q ss_pred CCCCCcccccCCCccccCCCCeeecCCCCCCC-cccchHHHHHhhcCccCCCCCCCCCC
Q 002020 3 QSGAPVCNTCGDQVGFTANGEVFVACSECNFP-ICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 3 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
......|.||-+.. .--.|++| +=- .|..|.+ ..+.||-|+++.+.
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~-----~~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVK-----YFQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHH-----HCSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHh-----cCCCCCCCCcchhc
Confidence 45567899998762 22357777 433 8999996 24899999998754
No 72
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=57.06 E-value=7.1 Score=36.16 Aligned_cols=45 Identities=24% Similarity=0.544 Sum_probs=32.7
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
-.|.||-+... ++.+.. .|+-..|+.|..--.+ ..||.|++++..
T Consensus 23 ~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 23 LRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAWI 67 (117)
T ss_dssp TSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCSC
T ss_pred CCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCcc
Confidence 47999987642 243333 5899999999954443 789999999854
No 73
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.60 E-value=9.8 Score=30.92 Aligned_cols=42 Identities=21% Similarity=0.556 Sum_probs=30.7
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh--cCccCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE--GRKACLRC 54 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e--G~~~CP~C 54 (980)
...|.||-+..- ++.+ - .|+--.|+.|.+--.++ ++..||.|
T Consensus 20 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCS-----SCEE-C-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhC-----CeEE-e-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 458999988753 2322 2 67888999999766654 56789988
No 74
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.10 E-value=12 Score=32.05 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=33.9
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
...|.||-+..-. +.+ - .|+-..|+.|..--.+ .+..||.|++++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~-~-~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVV-T-KCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEE-C-TTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeE-c-cCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 4579999887521 322 2 5788889999966554 4689999999985
No 75
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=55.80 E-value=6.6 Score=33.44 Aligned_cols=27 Identities=26% Similarity=0.737 Sum_probs=20.7
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPI 35 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~Fpv 35 (980)
-+|.-||.++.++.+ .-+-|.+|++.|
T Consensus 22 Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred EECCCCCCeeecCCC--CceECCCCCcEE
Confidence 478889988887753 338899998876
No 76
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=54.67 E-value=7 Score=37.35 Aligned_cols=45 Identities=22% Similarity=0.592 Sum_probs=31.7
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
.|.||-+..- ++ |.. .|+--.|+.|..--.+ .+..||.|+++...
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWMK-RKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHTT-TCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHHH-cCCcCCCCCCcCCC
Confidence 6999988742 12 222 4788899999854443 45789999998854
No 77
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=53.22 E-value=13 Score=34.75 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=39.0
Q ss_pred CCCCcccccCCCccc----cCCCCee----ecCCCCCCC---------------cccchHHHHHhhcC-ccCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGF----TANGEVF----VACSECNFP---------------ICKSCFDDEIKEGR-KACLRCASPYD 59 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~Fp---------------vCr~Cyeye~~eG~-~~CP~Ckt~Y~ 59 (980)
+....|..|+..|.- .+.|..+ .-|.+|+=+ .|+.||.. +-|. +.|-.|+.+..
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp SCCCCBSSSSSCCCSSCCEEETTEEECHHHHCCSSSCCCTTTSEECCEEETTEEECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred CCCCCCcccCCEeCCcEEEEECCceeHhhCCCcCCCCCcccccCCeEEEECCeeecHHHHHH--HcCCCCccccCCCCcC
Confidence 456789999988753 2355543 247778444 49999843 3343 38999999997
Q ss_pred CCcc
Q 002020 60 ENLL 63 (980)
Q Consensus 60 e~~~ 63 (980)
.+++
T Consensus 81 ~~~~ 84 (122)
T 1m3v_A 81 GGDV 84 (122)
T ss_dssp CEES
T ss_pred chhe
Confidence 6554
No 78
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=52.68 E-value=10 Score=43.04 Aligned_cols=52 Identities=17% Similarity=0.449 Sum_probs=35.5
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
.....|.||-+..- + -...+| +=-.|+.|..--.+.++..||-|+++....+
T Consensus 330 ~~~~~C~ICle~~~---~-pv~lpC---GH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~ 381 (389)
T 2y1n_A 330 STFQLCKICAENDK---D-VKIEPC---GHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381 (389)
T ss_dssp TSSSBCTTTSSSBC---C-EEEETT---CCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred CCCCCCCccCcCCC---C-eEEeCC---CChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence 34468999977641 1 134555 4445999996555547799999999986543
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.16 E-value=4.3 Score=34.06 Aligned_cols=50 Identities=24% Similarity=0.523 Sum_probs=34.9
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
....|.||-+.+.. -..+ .|+--.|+.|.+--.+.+ ..||-|+.++..++
T Consensus 14 ~~~~C~IC~~~~~~----~~~~---~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~ 63 (71)
T 2d8t_A 14 TVPECAICLQTCVH----PVSL---PCKHVFCYLCVKGASWLG-KRCALCRQEIPEDF 63 (71)
T ss_dssp SCCBCSSSSSBCSS----EEEE---TTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHHH
T ss_pred CCCCCccCCcccCC----CEEc---cCCCHHHHHHHHHHHHCC-CcCcCcCchhCHhh
Confidence 34679999887521 1334 367788999995434443 89999999986544
No 80
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.57 E-value=9.2 Score=33.72 Aligned_cols=38 Identities=24% Similarity=0.642 Sum_probs=30.0
Q ss_pred CCCCcccccCCCccccC-CCCeeecCCCCCCCcccchHHHHH
Q 002020 4 SGAPVCNTCGDQVGFTA-NGEVFVACSECNFPICKSCFDDEI 44 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~FpvCr~Cyeye~ 44 (980)
-+...|.-|+...|+-- +| +.|..|...||+.|-.+..
T Consensus 23 ~~~r~CarC~~~LG~l~~~g---~~C~~Ck~rVC~~Crv~~~ 61 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKT---NTCRGCNHLVCRDCRIQES 61 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTT---SEETTTTEECCTTSEEECS
T ss_pred CCccchhhhCccccccccCC---CcCcccChhhcccccccCC
Confidence 34568999999998753 34 6899999999999985543
No 81
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=47.12 E-value=6.2 Score=48.58 Aligned_cols=54 Identities=28% Similarity=0.722 Sum_probs=39.1
Q ss_pred CCCcccccCCCccccCC---CCeeecCCCC--------------------CCCcccchH-HHH----Hh--hcCccCCCC
Q 002020 5 GAPVCNTCGDQVGFTAN---GEVFVACSEC--------------------NFPICKSCF-DDE----IK--EGRKACLRC 54 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~---G~~fvaC~eC--------------------~FpvCr~Cy-eye----~~--eG~~~CP~C 54 (980)
...+|.-|=.++---.| +-+|+-|..| .||.|..|. ||+ |+ ----+||.|
T Consensus 105 D~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~C 184 (772)
T 4g9i_A 105 DIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPVC 184 (772)
T ss_dssp CCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCccC
Confidence 44578888877643232 5689999999 499999998 676 22 111499999
Q ss_pred CCCC
Q 002020 55 ASPY 58 (980)
Q Consensus 55 kt~Y 58 (980)
+=++
T Consensus 185 GP~l 188 (772)
T 4g9i_A 185 GPSY 188 (772)
T ss_dssp SCCE
T ss_pred CceE
Confidence 9887
No 82
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.97 E-value=14 Score=32.25 Aligned_cols=51 Identities=18% Similarity=0.550 Sum_probs=35.9
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHH-HhhcCccCCCCCCCCCCCc
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE-IKEGRKACLRCASPYDENL 62 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye-~~eG~~~CP~Ckt~Y~e~~ 62 (980)
-..|.||-+.|+. | ..|.+|+-..=..|..-= +..++..||.|+++.+.++
T Consensus 15 i~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~ 66 (74)
T 2ct0_A 15 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEI 66 (74)
T ss_dssp SCBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCC
T ss_pred CCcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCC
Confidence 3689999999873 3 356677766667787433 3345589999999886433
No 83
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.62 E-value=18 Score=28.95 Aligned_cols=46 Identities=17% Similarity=0.567 Sum_probs=32.2
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
.....|.||-+..-. . ... .|+-..|+.|..- .+..||.|+++...
T Consensus 4 ~~~~~C~IC~~~~~~-p---~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC-P---KLL---PCLHTLCSGCLEA----SGMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBC-C---SCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCC-e---EEc---CCCCcccHHHHcc----CCCCCCcCCcEeec
Confidence 345679999886431 1 233 3677789999743 67899999998854
No 84
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=43.52 E-value=6.8 Score=47.30 Aligned_cols=53 Identities=25% Similarity=0.688 Sum_probs=39.7
Q ss_pred CCCcccccCCCccccCC---CCeeecCCCC--------------------CCCcccchH-HHH----Hh---hcCccCCC
Q 002020 5 GAPVCNTCGDQVGFTAN---GEVFVACSEC--------------------NFPICKSCF-DDE----IK---EGRKACLR 53 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~---G~~fvaC~eC--------------------~FpvCr~Cy-eye----~~---eG~~~CP~ 53 (980)
...+|.-|=.++---.| +-+|+-|-.| .||.|..|. ||+ |+ +. -+||.
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp-~aCp~ 94 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQP-VACPE 94 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTT-CCCTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCC-CcCcc
Confidence 44578888877643222 5589999999 599999998 777 33 22 59999
Q ss_pred CCCCC
Q 002020 54 CASPY 58 (980)
Q Consensus 54 Ckt~Y 58 (980)
|+=++
T Consensus 95 CGP~l 99 (657)
T 3ttc_A 95 CGPYL 99 (657)
T ss_dssp TSCCE
T ss_pred cCccc
Confidence 99887
No 85
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.45 E-value=19 Score=33.59 Aligned_cols=55 Identities=16% Similarity=0.478 Sum_probs=32.9
Q ss_pred CCcccccCCCccc----cCCCCee----ecCCCCCC---------------CcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGF----TANGEVF----VACSECNF---------------PICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~----~~~G~~f----vaC~eC~F---------------pvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
..+|..|+..|.- .+.|..+ ..|.+|+= |.|++||.. +....+.|..|+++....
T Consensus 2 ~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~-~~~~~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 2 LLTCGGCQQNIGDRYFLKAIDQYWHEDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLR-LFGQDGLCASCDKRIRAY 79 (131)
T ss_dssp CCBBTTTCCBCCSSEEEEETTEEEETTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHH-HHCCCEECTTTCCEECTT
T ss_pred cccCcCCCCEeCCcEEEEECCCcccHHHcccCcCCCccccCCCeEEEECCEEeecCchhh-hCCCccChhhcCCccCcc
Confidence 3578888877642 2344432 23555632 459999943 222224899999998653
No 86
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.32 E-value=19 Score=30.62 Aligned_cols=42 Identities=29% Similarity=0.623 Sum_probs=29.3
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCC-cccchHHHHHhhcCccCCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFP-ICKSCFDDEIKEGRKACLRCASPYDE 60 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCr~Cyeye~~eG~~~CP~Ckt~Y~e 60 (980)
..|.||-+..- --.+++| +-- .|+.|.+ ....||-|+++.+.
T Consensus 26 ~~C~IC~~~~~----~~~~~pC---gH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 26 KLCKICMDRNI----AIVFVPC---GHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HSCSSSCSSCC----CBCCSSS---CCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCcCCCCCC----CEEEecC---CCHHHHHHHhh-----CCCCCccCCceecC
Confidence 36999987631 1235555 666 7999983 34899999998854
No 87
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=39.52 E-value=2.3 Score=30.10 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=15.4
Q ss_pred CCCcccchHHHHHhhcCccCCCCCC
Q 002020 32 NFPICKSCFDDEIKEGRKACLRCAS 56 (980)
Q Consensus 32 ~FpvCr~Cyeye~~eG~~~CP~Ckt 56 (980)
.|||||.|+.--++ .++...|++
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999943333 455566665
No 88
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=39.20 E-value=22 Score=32.80 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=35.4
Q ss_pred CCCcccccCCCcccc----------CCCC--eeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFT----------ANGE--VFVACSECNFPICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~----------~~G~--~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
....|.||-+.+... ..|+ ..+.- .|+---++.|-.-=.+ .+..||-|+.+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~-~C~H~FH~~Ci~~Wl~-~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLK-TRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEE-TTSCEEEHHHHHHHHT-TCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeec-ccCcEECHHHHHHHHH-cCCcCcCCCCcce
Confidence 456899998886643 1222 22323 6788899999844444 4789999999873
No 89
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=39.10 E-value=7 Score=37.83 Aligned_cols=45 Identities=18% Similarity=0.600 Sum_probs=35.6
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
-.|.||.+-+- ++ |.. .|+=--|+.|.+--.+.++..||.|+.+.
T Consensus 32 ~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 47999987642 23 334 78999999999887888888999999976
No 90
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=38.83 E-value=14 Score=43.73 Aligned_cols=36 Identities=22% Similarity=0.570 Sum_probs=30.2
Q ss_pred CCCCcccccCCCc-cccCCCCeeecCCCCCCCcccchHHH
Q 002020 4 SGAPVCNTCGDQV-GFTANGEVFVACSECNFPICKSCFDD 42 (980)
Q Consensus 4 ~~~~~C~iCgd~v-g~~~~G~~fvaC~eC~FpvCr~Cyey 42 (980)
.....|..|++-+ |+...| ..|..|+|.||+.|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 3467899999997 776666 78999999999999954
No 91
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=38.31 E-value=14 Score=30.59 Aligned_cols=47 Identities=19% Similarity=0.407 Sum_probs=32.6
Q ss_pred CCCcccccCCCccccCCCCeee--cCCCCCCC-cccchHHHHHhhcCccCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFV--ACSECNFP-ICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fv--aC~eC~Fp-vCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
....|.||-|+... -.|+ +| |-- .|..|.+--. +.+..||-|+.+.+
T Consensus 7 ~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKN----GCIVHGKT---GHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSC----EEEEETTE---EEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCC----EEEECCCC---CChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 45689999886321 1455 65 555 6999996544 45688999999874
No 92
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.98 E-value=29 Score=27.23 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=30.5
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh--cCccCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE--GRKACLRC 54 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e--G~~~CP~C 54 (980)
....|.||-+.... . ... .|+--.|+.|.+--.++ ++..||-|
T Consensus 14 ~~~~C~IC~~~~~~---p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE---P-VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS---C-CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc---c-EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34689999987532 1 223 57888899999665443 77899988
No 93
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=37.92 E-value=18 Score=32.04 Aligned_cols=49 Identities=27% Similarity=0.619 Sum_probs=33.9
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHH----HhhcC---ccCCC--CCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE----IKEGR---KACLR--CASP 57 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye----~~eG~---~~CP~--Ckt~ 57 (980)
+...|.||-+.+. +..++.-..|+=.-|++|..-- .++|. -.||+ |+..
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4458999988743 2344444357888999998433 23664 48999 9998
No 94
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.63 E-value=26 Score=31.26 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=34.4
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhc-----CccCCC--CCCC-CCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEG-----RKACLR--CASP-YDE 60 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG-----~~~CP~--Ckt~-Y~e 60 (980)
.-.|.||.+- +. ++.+.- .|+.-.||.|-+--.+++ ...||. |+.+ +..
T Consensus 7 ~~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~ 63 (94)
T 2yu4_A 7 GFTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRK 63 (94)
T ss_dssp CCBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCG
T ss_pred EeECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCH
Confidence 3579999854 33 355543 689999999997665543 468999 8876 443
No 95
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=36.92 E-value=28 Score=32.26 Aligned_cols=53 Identities=25% Similarity=0.723 Sum_probs=35.7
Q ss_pred CCcccccCCCccc----cCCCCee----ecCCCCC-------------CCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 6 APVCNTCGDQVGF----TANGEVF----VACSECN-------------FPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~----~~~G~~f----vaC~eC~-------------FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
...|..|+..|.. .+.|..+ ..|.+|+ -|.|++||. ++-| ..|..|+++...+
T Consensus 3 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~--~~~~-~~C~~C~~~I~~~ 76 (126)
T 2xqn_T 3 KPRCAGCDELIFSNEYTQAENQNWHLKHFCCFDCDSILAGEIYVMVNDKPVCKPCYV--KNHA-VVCQGCHNAIDPE 76 (126)
T ss_dssp CCBBTTTSSBCCSSCEEEETTEEECGGGSBCTTTCCBCTTSEEEEETTEEEEHHHHH--HHSC-CBCTTTCSBCCTT
T ss_pred CCCCccCCCEeCCceEEeeCCCCccCCCCCcCCCCCCCCcCEEEeECCEEechHHhC--cCcC-ccCcccCCcCCcC
Confidence 5689999988763 2345443 3466673 367999993 2233 7899999998753
No 96
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=36.69 E-value=25 Score=31.27 Aligned_cols=55 Identities=20% Similarity=0.550 Sum_probs=36.8
Q ss_pred CCCCcccccCCCccc-----cCCCCeee----cCCCCC-------------CCcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGF-----TANGEVFV----ACSECN-------------FPICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~-----~~~G~~fv----aC~eC~-------------FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
+.+..|..|+..|.. .+.|..+- .|.+|+ -+.|++||+ +.- ...|.+|+++...+
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~--~~~-~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 3 SGSSGCVECRKPIGADSKEVHYKNRFWHDTCFRCAKCLHPLANETFVAKDNKILCNKCTT--RED-SPKCKGCFKAIVAG 79 (101)
T ss_dssp SCCCBCSSSCCBCCSSSCEEEETTEEEETTTCCCSSSCCCTTSSCCEEETTEEECHHHHT--TCC-CCBCSSSCCBCCSS
T ss_pred CCCCcCcccCCcccCCceEEEECccChhhcCCcccccCCCCCcCeeECcCCEEEChhHhh--hhc-CCccccCCCccccC
Confidence 567899999999863 23455432 366662 256999983 223 37899999998743
No 97
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=33.96 E-value=41 Score=32.98 Aligned_cols=56 Identities=23% Similarity=0.520 Sum_probs=35.8
Q ss_pred CCCCcccccCCCccc----cCCCCee----ecCCCCC------------CCcccchHHHHHhhcCccCCCCCCCCCCCc
Q 002020 4 SGAPVCNTCGDQVGF----TANGEVF----VACSECN------------FPICKSCFDDEIKEGRKACLRCASPYDENL 62 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~------------FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~ 62 (980)
.....|..|+..|.- .+.|..+ ..|.+|+ -+.|+.||.- +-| ..|..|+++...++
T Consensus 4 ~~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~--~f~-~~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 4 PEIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFFK--RFG-TKCAACQLGIPPTQ 79 (169)
T ss_dssp ---CBBSSSSSBCCSSSCEECSSCEECTTTSBCTTTCCBCCSCCEESSSCEECHHHHHH--HHS-CBCTTTCCBCCTTS
T ss_pred CCCCccccCCCccCCcEEEEECCcEEccccCccCCCCCcCCCCCcccCCeeeecccccc--ccc-ccccccccccCCCc
Confidence 345799999998753 2345443 3466774 3569999842 233 78999999886543
No 98
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=33.90 E-value=17 Score=31.42 Aligned_cols=24 Identities=21% Similarity=0.852 Sum_probs=11.5
Q ss_pred cccccCCCccccCCCCeeecCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNF 33 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~F 33 (980)
+|.-||.++.+.. ++ -+.|.+|+.
T Consensus 30 ~C~~CG~~~e~~~-~d-~irCp~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLSR-TD-AVRCKDCGH 53 (70)
T ss_dssp ECSSSCCEECCCT-TS-TTCCSSSCC
T ss_pred ECCCCCCcceeCC-CC-CccCCCCCc
Confidence 4555665554442 11 234555555
No 99
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=33.71 E-value=10 Score=32.73 Aligned_cols=51 Identities=29% Similarity=0.707 Sum_probs=38.4
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHH-HhhcCccCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE-IKEGRKACLRCAS 56 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye-~~eG~~~CP~Ckt 56 (980)
.+...|.||++. -+++++..+-|..|.-..=..||.-. .-+|.=.||.|..
T Consensus 14 ~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 14 DEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 456789999874 23566788999999887778888543 4478888988853
No 100
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=32.92 E-value=11 Score=30.64 Aligned_cols=31 Identities=26% Similarity=0.874 Sum_probs=25.3
Q ss_pred CCcccccCCCccccCCCCeeecCCCC-CCCcccchHHH
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSEC-NFPICKSCFDD 42 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC-~FpvCr~Cyey 42 (980)
+-.|..|+.+|| .-.-|.+| .|-+|..||.-
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhC
Confidence 457999998853 46889999 89999999954
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=32.71 E-value=30 Score=32.05 Aligned_cols=52 Identities=23% Similarity=0.549 Sum_probs=39.1
Q ss_pred CCcccccCCCcc--ccCCCCeeecCCCCCCCcccchHHH------HHhhcCccCCCCCCC
Q 002020 6 APVCNTCGDQVG--FTANGEVFVACSECNFPICKSCFDD------EIKEGRKACLRCASP 57 (980)
Q Consensus 6 ~~~C~iCgd~vg--~~~~G~~fvaC~eC~FpvCr~Cyey------e~~eG~~~CP~Ckt~ 57 (980)
..+|.+|.+.=. .+.+++.++.|..|+-..=..|.+. ..++++=.||.||+=
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C 64 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTC 64 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCB
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCcc
Confidence 468999976532 3356778999999987777788853 356888999999843
No 102
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=32.69 E-value=29 Score=28.70 Aligned_cols=50 Identities=12% Similarity=0.127 Sum_probs=36.3
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhhcCccCCCCCCCCCCCcc
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKEGRKACLRCASPYDENLL 63 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~ 63 (980)
-.|.||++- +. ++.+. ..||+-.||.|-+--.++. +.||-++++.+.+|.
T Consensus 4 ~~CpIs~~~-m~----dPV~~-~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~L 53 (61)
T 2bay_A 4 MLCAISGKV-PR----RPVLS-PKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEI 53 (61)
T ss_dssp CCCTTTCSC-CS----SEEEE-TTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGC
T ss_pred EEecCCCCC-CC----CCEEe-CCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhc
Confidence 478898865 33 34443 2589999999997776654 569999999976654
No 103
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=32.24 E-value=20 Score=30.43 Aligned_cols=46 Identities=20% Similarity=0.491 Sum_probs=35.2
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHH---HhhcCccCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE---IKEGRKACLRCAS 56 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye---~~eG~~~CP~Ckt 56 (980)
..+..|.+|++. | ..+-|..|.-..=-.|..-. .-+|.=.||.|+.
T Consensus 10 ~~~~~C~vC~~~------~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDG------T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCC------T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCCC------C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 455689999853 3 47889999988888898543 3378889999974
No 104
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=31.82 E-value=20 Score=29.82 Aligned_cols=47 Identities=30% Similarity=0.759 Sum_probs=34.7
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHH---HHhhcCccCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDD---EIKEGRKACLRCASP 57 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyey---e~~eG~~~CP~Ckt~ 57 (980)
.+...|.+|++ |...+-|..|.-..=-.|..- +.-+|.=.||.|..+
T Consensus 7 ~~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45678999996 346789999977766778752 234788889999764
No 105
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=31.00 E-value=32 Score=34.39 Aligned_cols=56 Identities=21% Similarity=0.505 Sum_probs=36.6
Q ss_pred CCCCcccccCCCccc----cCCCCee----ecCCCCCC---------------CcccchHHHHHhhcCc-cCCCCCCCCC
Q 002020 4 SGAPVCNTCGDQVGF----TANGEVF----VACSECNF---------------PICKSCFDDEIKEGRK-ACLRCASPYD 59 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~F---------------pvCr~Cyeye~~eG~~-~CP~Ckt~Y~ 59 (980)
+....|..|+..|.- .+.|..+ ..|.+|+- +.|+.||.. +-+.+ .|..|+++..
T Consensus 3 l~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~--~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 3 LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIR--LFGNSGACSACGQSIP 80 (188)
T ss_dssp -CCCBBTTTCCBCCCSEEEEETTEEECGGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHH--HHSCCEECTTTCCEEC
T ss_pred CCCCcCccCCCEeCCceeEEecCcEecccCcccCCCCcccccCCceEEEeCCcccccccccc--ccccCCccccCCCccc
Confidence 456799999998763 2345432 34777743 458999832 33433 8999999986
Q ss_pred CC
Q 002020 60 EN 61 (980)
Q Consensus 60 e~ 61 (980)
..
T Consensus 81 ~~ 82 (188)
T 1rut_X 81 AS 82 (188)
T ss_dssp TT
T ss_pred cC
Confidence 53
No 106
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=30.46 E-value=9.9 Score=30.23 Aligned_cols=20 Identities=30% Similarity=0.793 Sum_probs=14.7
Q ss_pred hhcCccCCCCCCCCCCCccc
Q 002020 45 KEGRKACLRCASPYDENLLD 64 (980)
Q Consensus 45 ~eG~~~CP~Ckt~Y~e~~~d 64 (980)
..|.-+|+.|+.-|+++.+|
T Consensus 21 ~~gelvC~~CG~v~~e~~id 40 (50)
T 1pft_A 21 ERGEIVCAKCGYVIEENIID 40 (50)
T ss_dssp TTTEEEESSSCCBCCCCCCC
T ss_pred CCCeEECcccCCcccccccc
Confidence 35567888888888777664
No 107
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=30.10 E-value=16 Score=32.64 Aligned_cols=27 Identities=41% Similarity=0.935 Sum_probs=15.6
Q ss_pred cccccCCCccccC----CCCeeecCCCCCCCc
Q 002020 8 VCNTCGDQVGFTA----NGEVFVACSECNFPI 35 (980)
Q Consensus 8 ~C~iCgd~vg~~~----~G~~fvaC~eC~Fpv 35 (980)
.|. |||..-+++ +|+..+.|..|...|
T Consensus 32 ~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 32 PCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp CCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred eCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 355 666644432 566666666666555
No 108
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=28.30 E-value=9 Score=37.25 Aligned_cols=11 Identities=36% Similarity=0.585 Sum_probs=9.2
Q ss_pred CccCCCCCCCC
Q 002020 48 RKACLRCASPY 58 (980)
Q Consensus 48 ~~~CP~Ckt~Y 58 (980)
...||.|+.+-
T Consensus 107 ~~~CP~Cgs~~ 117 (139)
T 3a43_A 107 FLACPKCGSHD 117 (139)
T ss_dssp GCSCSSSSCCC
T ss_pred CCcCccccCCc
Confidence 57899999885
No 109
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=28.24 E-value=13 Score=33.77 Aligned_cols=26 Identities=42% Similarity=0.993 Sum_probs=14.7
Q ss_pred ccccCCCccccC----CCCeeecCCCCCCCc
Q 002020 9 CNTCGDQVGFTA----NGEVFVACSECNFPI 35 (980)
Q Consensus 9 C~iCgd~vg~~~----~G~~fvaC~eC~Fpv 35 (980)
|. |||..-+++ +|+..+.|..|..-|
T Consensus 26 Cr-CGd~F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 26 CP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp CT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred CC-CCCEEEECHHHHhCCCEEEECCCCccEE
Confidence 55 666644432 466666666666555
No 110
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=27.44 E-value=14 Score=33.03 Aligned_cols=26 Identities=35% Similarity=0.893 Sum_probs=14.9
Q ss_pred ccccCCCccccC----CCCeeecCCCCCCCc
Q 002020 9 CNTCGDQVGFTA----NGEVFVACSECNFPI 35 (980)
Q Consensus 9 C~iCgd~vg~~~----~G~~fvaC~eC~Fpv 35 (980)
|. |||..-+++ +|+..+.|..|..-|
T Consensus 26 Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 26 CP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp ET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred CC-CCCeEEECHHHHhCCCEEEECCCCccEE
Confidence 55 666644432 566666666666554
No 111
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=26.97 E-value=17 Score=33.90 Aligned_cols=26 Identities=23% Similarity=0.598 Sum_probs=18.3
Q ss_pred cCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 27 ACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 27 aC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.|.+|||..+ ++-.....||.||..-
T Consensus 69 ~C~~CG~~F~------~~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 69 QCRKCGFVFK------AEINIPSRCPKCKSEW 94 (105)
T ss_dssp BBTTTCCBCC------CCSSCCSSCSSSCCCC
T ss_pred ChhhCcCeec------ccCCCCCCCcCCCCCc
Confidence 4999999871 2234447999999753
No 112
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=26.92 E-value=36 Score=26.86 Aligned_cols=32 Identities=28% Similarity=0.819 Sum_probs=24.3
Q ss_pred CCCCCCcccccCC-CccccC-CCCeeecCCCCCCCc
Q 002020 2 MQSGAPVCNTCGD-QVGFTA-NGEVFVACSECNFPI 35 (980)
Q Consensus 2 ~~~~~~~C~iCgd-~vg~~~-~G~~fvaC~eC~Fpv 35 (980)
|......|..||. ++-.+. .|+ +-|.+|+.-+
T Consensus 1 m~~~~~~CP~C~~~~l~~d~~~ge--lvC~~CG~v~ 34 (50)
T 1pft_A 1 MVNKQKVCPACESAELIYDPERGE--IVCAKCGYVI 34 (50)
T ss_dssp CCSSCCSCTTTSCCCEEEETTTTE--EEESSSCCBC
T ss_pred CCCccEeCcCCCCcceEEcCCCCe--EECcccCCcc
Confidence 5555678999999 787775 577 6798998744
No 113
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=26.39 E-value=5.2 Score=34.68 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=22.1
Q ss_pred eeecCCCCCCCcccchHHHHHhhcCccCCCCCCCC
Q 002020 24 VFVACSECNFPICKSCFDDEIKEGRKACLRCASPY 58 (980)
Q Consensus 24 ~fvaC~eC~FpvCr~Cyeye~~eG~~~CP~Ckt~Y 58 (980)
.+.+| |+|+.=.+|+..+|.-.|+.|+..|
T Consensus 7 ~iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 7 DILVC-----PVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCCBC-----TTTCCBEEEETTTTEEEETTTTEEE
T ss_pred hheEC-----CCCCCcCEEeCCCCEEEcCCCCcee
Confidence 35677 5555555566667888999999999
No 114
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.70 E-value=25 Score=37.90 Aligned_cols=50 Identities=10% Similarity=0.307 Sum_probs=35.1
Q ss_pred CCcccccCCCccccCCCCeeecCCCCCCCcccchHHHHHhh-cCccCCC--CCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDEIKE-GRKACLR--CASPYDEN 61 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye~~e-G~~~CP~--Ckt~Y~e~ 61 (980)
.-.|.||.+-.- ++.+ ...||---||.|.+--.++ |...||. |+.++...
T Consensus 181 el~CPIcl~~f~-----DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~ 233 (267)
T 3htk_C 181 ELTCPITCKPYE-----APLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR 233 (267)
T ss_dssp CSBCTTTSSBCS-----SEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG
T ss_pred eeECcCccCccc-----CCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh
Confidence 347999987641 2332 2468888999999766555 5578998 99987543
No 115
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=25.45 E-value=32 Score=35.00 Aligned_cols=54 Identities=19% Similarity=0.407 Sum_probs=36.4
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchH---H--HHHh-----hcCccCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCF---D--DEIK-----EGRKACLRCASPY 58 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cy---e--ye~~-----eG~~~CP~Ckt~Y 58 (980)
+|+.|.+|+..-.-++.+...+.|..|..=+=..|- + +|.- +..=.||.|...-
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 478999998765444446679999999866655554 2 2221 1357999998765
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=24.85 E-value=38 Score=27.87 Aligned_cols=46 Identities=13% Similarity=0.332 Sum_probs=31.3
Q ss_pred CCcccccCCCccccCCCCeee--cCCCCCCC-cccchHHHHHhhcCccCCCCCCCCC
Q 002020 6 APVCNTCGDQVGFTANGEVFV--ACSECNFP-ICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~~G~~fv--aC~eC~Fp-vCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
...|.||-|+-. --.++ +| |-- .|..|..--. +.++.||-|..+.+
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRT---GHLVTCFHCARRLK-KAGASCPICKKEIQ 55 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTE---EEEEECHHHHHHHH-HTTCBCTTTCCBCC
T ss_pred CCCCcccCCcCC----CeEEEecCC---CCHhHHHHHHHHHH-HhCCcCCCcCchhh
Confidence 467999988621 11344 66 444 7999996544 44589999999874
No 117
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=24.83 E-value=26 Score=27.68 Aligned_cols=45 Identities=24% Similarity=0.717 Sum_probs=31.3
Q ss_pred cccccCCCccccCCCCeeecCCCCCCCcccchHHH---HHhhcCccCCCCCC
Q 002020 8 VCNTCGDQVGFTANGEVFVACSECNFPICKSCFDD---EIKEGRKACLRCAS 56 (980)
Q Consensus 8 ~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyey---e~~eG~~~CP~Ckt 56 (980)
.|.+|++. .+++..+-|..|.-..=-.|+.- +.-+|.=.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 24667899998865444566632 23367788999975
No 118
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=24.33 E-value=30 Score=29.50 Aligned_cols=49 Identities=31% Similarity=0.662 Sum_probs=25.3
Q ss_pred CCCCcccccCCCccc----cCCCCee----ecCCCCC-------------CCcccchHHHHHhhcCccCCCCC
Q 002020 4 SGAPVCNTCGDQVGF----TANGEVF----VACSECN-------------FPICKSCFDDEIKEGRKACLRCA 55 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~-------------FpvCr~Cyeye~~eG~~~CP~Ck 55 (980)
.....|..|+..|.. .+.|..+ ..|.+|. -+.|++||+ +.-| ..|-+|.
T Consensus 5 ~~~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~--~~f~-~~c~gcg 74 (81)
T 1a7i_A 5 GGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYG--KKYG-PKGYGYG 74 (81)
T ss_dssp ---CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEEETTEEECSHHHH--HHCC--------
T ss_pred CCCCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEeeCCEEECHHHHH--HHhC-CcccccC
Confidence 456799999999853 3466654 2466774 257888883 2333 4565664
No 119
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=23.82 E-value=91 Score=30.83 Aligned_cols=54 Identities=24% Similarity=0.548 Sum_probs=36.5
Q ss_pred CCCcccccCCCccc----cCCCCee----ecCCCCCC------------CcccchHHHHHhhcCccCCCCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGF----TANGEVF----VACSECNF------------PICKSCFDDEIKEGRKACLRCASPYDEN 61 (980)
Q Consensus 5 ~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~F------------pvCr~Cyeye~~eG~~~CP~Ckt~Y~e~ 61 (980)
....|..|+..|.- .+.|..+ ..|.+|+= |.|++||. ++-| ..|.+|+++...+
T Consensus 59 ~~~~C~~C~~~I~~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~--~~f~-~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 59 EIPMCAGCDQHILDRFILKALDRHWHSKCLKCSDCHVPLAERCFSRGESVYCKDDFF--KRFG-TKCAACQLGIPPT 132 (182)
T ss_dssp SCCBCBTSSSBCCCSEEEEETTEEECSSTTSCTTTCCCCSSCCEEETTEEECHHHHH--HTTS-CCCTTTCCCCCSS
T ss_pred CCCcCccCCCCccCceeEEecCCeEccccCccCCCCCccCCCceeECCEeeecCccc--cccc-cccccCCCccCCC
Confidence 34799999998763 2355543 34667754 45999983 2333 7899999988654
No 120
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=23.21 E-value=2.7 Score=32.78 Aligned_cols=25 Identities=48% Similarity=0.981 Sum_probs=17.3
Q ss_pred CCcccccCCCccccC----CCCeeecCCC
Q 002020 6 APVCNTCGDQVGFTA----NGEVFVACSE 30 (980)
Q Consensus 6 ~~~C~iCgd~vg~~~----~G~~fvaC~e 30 (980)
+.+|.-|||+|..-+ +.++..||||
T Consensus 20 snvcngcgdqvaaceaecfrndvytache 48 (51)
T 2ksl_A 20 SNVCNGCGDQVAACEAECFRNDVYTACHE 48 (51)
T ss_dssp HHHHHHHCSCHHHHHHTTSCSHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHhhhHHHHHHh
Confidence 357999999976532 5566777765
No 121
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=23.21 E-value=37 Score=28.72 Aligned_cols=41 Identities=29% Similarity=0.664 Sum_probs=28.9
Q ss_pred CcccccCCCccccCCCCeeecCCCCCCC-cccchHHHHHhhcCccCCCCCCCCC
Q 002020 7 PVCNTCGDQVGFTANGEVFVACSECNFP-ICKSCFDDEIKEGRKACLRCASPYD 59 (980)
Q Consensus 7 ~~C~iCgd~vg~~~~G~~fvaC~eC~Fp-vCr~Cyeye~~eG~~~CP~Ckt~Y~ 59 (980)
..|.||-+..- --.+.+| +=- .|+.|..-- ..||-|+++..
T Consensus 25 ~~C~iC~~~~~----~~~~~pC---gH~~~C~~C~~~~-----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 25 KLCKICMDRNI----AIVFVPC---GHLVTCKQCAEAV-----DKCPMCYTVIT 66 (74)
T ss_dssp TBCTTTSSSBC----CEEEETT---CCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred CCCCCCCCCCC----CEEEcCC---CChhHHHHhhhcC-----ccCCCcCcCcc
Confidence 46999987632 1245655 666 899997422 89999999874
No 122
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=23.16 E-value=27 Score=28.99 Aligned_cols=46 Identities=22% Similarity=0.613 Sum_probs=34.3
Q ss_pred CCCCcccccCCCccccCCCCeeecCCCCCCCcccchHHH---HHhhcCccCCCCCC
Q 002020 4 SGAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDD---EIKEGRKACLRCAS 56 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyey---e~~eG~~~CP~Ckt 56 (980)
.+...|.+|++. ...+.|..|.-.-=-.|..- +.-+|.=.||.|..
T Consensus 9 ~~~~~C~vC~~~-------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQG-------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCC-------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCC-------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 456789999972 46788999977666777754 23478899999974
No 123
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.43 E-value=91 Score=25.68 Aligned_cols=39 Identities=36% Similarity=0.796 Sum_probs=25.4
Q ss_pred CCCCcccccCCCccc-----cCCCCee----ecCCCCC-------------CCcccchHHH
Q 002020 4 SGAPVCNTCGDQVGF-----TANGEVF----VACSECN-------------FPICKSCFDD 42 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~-----~~~G~~f----vaC~eC~-------------FpvCr~Cyey 42 (980)
+.+..|..|+..|.. .+.|..+ ..|.+|+ -+.|++||+-
T Consensus 3 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 63 (72)
T 1x61_A 3 SGSSGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYAVERRAYCEGCYVA 63 (72)
T ss_dssp SCCCCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEESSSCEEEHHHHHH
T ss_pred CCCCCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEeeCCeEECHHHHHH
Confidence 456789999988764 2456554 3366662 3578888843
No 124
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=22.08 E-value=19 Score=32.21 Aligned_cols=52 Identities=29% Similarity=0.682 Sum_probs=39.4
Q ss_pred CCCcccccCCCccccCCCCeeecCCCCCCCcccchHHHH-HhhcCccCCCCCCCC
Q 002020 5 GAPVCNTCGDQVGFTANGEVFVACSECNFPICKSCFDDE-IKEGRKACLRCASPY 58 (980)
Q Consensus 5 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~FpvCr~Cyeye-~~eG~~~CP~Ckt~Y 58 (980)
+...|.+|++. -..+++..+-|..|.-..=..||.-. .-+|.=.||.|...-
T Consensus 24 ~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 24 EDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 45789999964 23466789999999877778888543 447889999997644
No 125
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.10 E-value=73 Score=26.34 Aligned_cols=15 Identities=27% Similarity=0.618 Sum_probs=11.6
Q ss_pred CCCCcccccCCCccc
Q 002020 4 SGAPVCNTCGDQVGF 18 (980)
Q Consensus 4 ~~~~~C~iCgd~vg~ 18 (980)
.....|..|+..|.-
T Consensus 3 ~~~~~C~~C~~~I~~ 17 (72)
T 1x4l_A 3 SGSSGCAGCTNPISG 17 (72)
T ss_dssp SCSCSBTTTTBCCCC
T ss_pred CCCCCCcCCCccccC
Confidence 456789999998874
No 126
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=20.02 E-value=64 Score=26.66 Aligned_cols=33 Identities=15% Similarity=0.465 Sum_probs=20.8
Q ss_pred cCCCCCC-CcccchHHHHHhhcCccCCCCCCCCCCCccc
Q 002020 27 ACSECNF-PICKSCFDDEIKEGRKACLRCASPYDENLLD 64 (980)
Q Consensus 27 aC~eC~F-pvCr~Cyeye~~eG~~~CP~Ckt~Y~e~~~d 64 (980)
.|.+|+= ++-. ..+.|.-+|..|+.-|+|.-+|
T Consensus 13 ~Cp~C~~~~lv~-----D~~~ge~vC~~CGlVl~e~~iD 46 (58)
T 1dl6_A 13 TCPNHPDAILVE-----DYRAGDMICPECGLVVGDRVID 46 (58)
T ss_dssp SBTTBSSSCCEE-----CSSSCCEECTTTCCEECCSCCC
T ss_pred cCcCCCCCceeE-----eCCCCeEEeCCCCCEEeccccc
Confidence 5666643 3322 2356778888888888776553
Done!