Query 002022
Match_columns 979
No_of_seqs 214 out of 335
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 14:45:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002022.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002022hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2347 Sec5 subunit of exocys 100.0 6E-123 1E-127 1077.5 52.8 842 30-937 2-874 (934)
2 PF15469 Sec5: Exocyst complex 100.0 1.4E-38 3E-43 328.1 19.3 179 239-417 1-182 (182)
3 KOG2346 Uncharacterized conser 100.0 9.8E-30 2.1E-34 283.2 38.0 206 198-408 25-231 (636)
4 PF04124 Dor1: Dor1-like famil 99.5 2.7E-12 5.7E-17 145.2 24.4 206 217-428 5-213 (338)
5 KOG2069 Golgi transport comple 99.0 1E-08 2.2E-13 119.3 20.5 213 203-428 18-237 (581)
6 PF08700 Vps51: Vps51/Vps67; 98.8 8.2E-09 1.8E-13 94.2 7.4 70 201-270 1-70 (87)
7 KOG2033 Low density lipoprotei 98.2 0.031 6.6E-07 67.3 45.6 198 215-427 13-230 (863)
8 PF10475 DUF2450: Protein of u 98.1 0.00028 6E-09 78.8 22.0 197 203-404 10-211 (291)
9 PF04100 Vps53_N: Vps53-like, 97.9 0.002 4.4E-08 74.7 23.9 227 204-444 2-258 (383)
10 KOG2176 Exocyst complex, subun 97.8 0.19 4.1E-06 62.0 41.7 130 211-348 36-165 (800)
11 PF10392 COG5: Golgi transport 97.1 0.0034 7.4E-08 62.3 10.8 113 202-326 4-128 (132)
12 PF06248 Zw10: Centromere/kine 97.1 1.2 2.6E-05 54.8 39.2 161 218-385 6-179 (593)
13 PF06148 COG2: COG (conserved 96.6 0.0026 5.7E-08 63.0 4.9 67 200-269 7-73 (133)
14 KOG2307 Low density lipoprotei 96.5 2.8 6.1E-05 50.2 34.6 193 200-404 27-234 (705)
15 PF04091 Sec15: Exocyst comple 96.5 0.014 3E-07 66.1 10.4 106 821-937 143-249 (311)
16 PF04048 Sec8_exocyst: Sec8 ex 95.8 0.088 1.9E-06 53.0 11.3 125 202-332 17-141 (142)
17 KOG3691 Exocyst complex subuni 95.5 0.38 8.3E-06 59.8 16.6 149 218-371 42-192 (982)
18 KOG2180 Late Golgi protein sor 95.4 2.7 5.9E-05 51.7 23.2 174 201-386 14-199 (793)
19 PF10191 COG7: Golgi complex c 94.3 21 0.00047 45.6 53.8 218 201-427 5-237 (766)
20 PF04437 RINT1_TIP1: RINT-1 / 81.4 11 0.00024 45.4 11.7 117 814-937 301-423 (494)
21 PF06046 Sec6: Exocyst complex 69.7 2.7E+02 0.0059 34.1 20.8 271 618-937 199-471 (566)
22 KOG4424 Predicted Rho/Rac guan 67.7 65 0.0014 39.4 12.7 142 282-444 110-254 (623)
23 PF04129 Vps52: Vps52 / Sac2 f 65.7 2.7E+02 0.0058 34.1 18.0 154 282-452 47-216 (508)
24 KOG2115 Vacuolar sorting prote 63.8 4.4E+02 0.0095 34.3 25.8 124 251-379 268-394 (951)
25 PF14923 CCDC142: Coiled-coil 58.6 1.5E+02 0.0033 35.6 13.6 97 849-953 257-361 (450)
26 PF10474 DUF2451: Protein of u 56.9 1.8E+02 0.0039 32.0 13.0 82 851-937 78-165 (234)
27 KOG1945 Protein phosphatase 1 49.4 1.6E+02 0.0035 34.2 11.3 23 147-169 209-231 (377)
28 PF12022 DUF3510: Domain of un 47.6 60 0.0013 32.1 6.9 55 852-906 22-77 (125)
29 cd07651 F-BAR_PombeCdc15_like 46.5 4.2E+02 0.009 28.8 15.0 39 220-258 61-99 (236)
30 KOG4648 Uncharacterized conser 45.1 2.2E+02 0.0047 33.3 11.4 43 331-373 105-159 (536)
31 KOG2347 Sec5 subunit of exocys 44.7 62 0.0013 41.4 7.8 179 192-392 76-274 (934)
32 COG2904 Uncharacterized protei 44.2 21 0.00046 35.3 3.1 75 149-226 28-112 (137)
33 PF06008 Laminin_I: Laminin Do 43.7 4.9E+02 0.011 28.8 16.7 89 286-379 54-143 (264)
34 KOG0553 TPR repeat-containing 41.4 1.8E+02 0.0038 33.3 10.0 89 302-406 76-181 (304)
35 cd07657 F-BAR_Fes_Fer The F-BA 39.7 5.5E+02 0.012 28.2 14.5 50 220-269 66-115 (237)
36 KOG1925 Rac1 GTPase effector F 36.6 5.1E+02 0.011 31.6 13.0 68 365-432 517-596 (817)
37 KOG1924 RhoA GTPase effector D 35.6 28 0.00061 43.7 2.9 18 209-228 705-722 (1102)
38 PF10516 SHNi-TPR: SHNi-TPR; 34.8 30 0.00066 27.3 2.1 21 333-353 11-31 (38)
39 PF09726 Macoilin: Transmembra 33.6 2.4E+02 0.0053 35.9 10.7 107 221-334 547-656 (697)
40 KOG4603 TBP-1 interacting prot 31.3 4.7E+02 0.01 27.6 10.3 67 227-314 80-146 (201)
41 KOG0412 Golgi transport comple 31.2 1.2E+03 0.027 29.8 21.3 203 203-416 15-238 (773)
42 KOG1924 RhoA GTPase effector D 28.0 48 0.001 41.8 3.2 11 106-116 644-654 (1102)
43 KOG3771 Amphiphysin [Intracell 28.0 7.1E+02 0.015 30.2 12.5 33 496-528 171-203 (460)
44 PF03670 UPF0184: Uncharacteri 27.9 63 0.0014 30.0 3.2 44 204-250 21-64 (83)
45 KOG0972 Huntingtin interacting 27.6 6.4E+02 0.014 28.8 11.3 81 201-291 239-319 (384)
46 KOG0780 Signal recognition par 27.5 1.3E+02 0.0028 35.6 6.3 58 203-270 282-339 (483)
47 PF04124 Dor1: Dor1-like famil 27.3 9.9E+02 0.022 27.4 15.6 72 313-384 156-238 (338)
48 PF05837 CENP-H: Centromere pr 26.4 48 0.001 31.9 2.3 40 818-859 58-97 (106)
49 PF10158 LOH1CR12: Tumour supp 26.3 3.9E+02 0.0084 26.9 8.7 68 203-270 21-99 (131)
50 PF04212 MIT: MIT (microtubule 25.1 1.5E+02 0.0032 25.8 5.0 18 336-353 18-35 (69)
51 PF02809 UIM: Ubiquitin intera 24.8 55 0.0012 21.9 1.6 12 5-16 1-12 (18)
52 PRK04778 septation ring format 24.5 1.2E+03 0.026 28.9 14.5 82 296-379 409-492 (569)
53 KOG2568 Predicted membrane pro 24.3 53 0.0012 39.9 2.7 64 47-110 447-516 (518)
54 cd07686 F-BAR_Fer The F-BAR (F 24.2 1E+03 0.022 26.4 14.6 51 219-269 65-115 (234)
55 smart00726 UIM Ubiquitin-inter 23.7 57 0.0012 23.8 1.7 12 6-17 1-12 (26)
56 cd07653 F-BAR_CIP4-like The F- 23.2 9.8E+02 0.021 25.9 13.2 41 219-259 65-105 (251)
57 cd02683 MIT_1 MIT: domain cont 22.8 1.9E+02 0.0041 26.3 5.3 47 335-381 18-72 (77)
58 KOG4514 Uncharacterized conser 22.4 5.6E+02 0.012 27.3 9.1 20 299-318 200-219 (222)
59 KOG2398 Predicted proline-seri 22.3 1.7E+03 0.036 28.3 15.3 48 221-268 49-96 (611)
60 PF00515 TPR_1: Tetratricopept 21.8 75 0.0016 23.1 2.2 21 333-353 11-31 (34)
61 PF04100 Vps53_N: Vps53-like, 21.3 1.1E+03 0.024 27.9 12.6 118 307-432 137-264 (383)
62 PRK10548 flagellar biosynthesi 21.3 5.4E+02 0.012 25.5 8.6 33 313-345 4-36 (121)
63 PF13176 TPR_7: Tetratricopept 20.8 80 0.0017 23.9 2.2 20 333-352 9-28 (36)
64 cd07648 F-BAR_FCHO The F-BAR ( 20.3 1.1E+03 0.024 25.9 11.9 46 337-382 164-209 (261)
65 cd02681 MIT_calpain7_1 MIT: do 20.2 2.2E+02 0.0047 26.0 5.1 45 335-379 18-71 (76)
66 PF05750 Rubella_Capsid: Rubel 20.2 1.4E+02 0.0031 31.4 4.4 25 9-33 10-37 (300)
No 1
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-123 Score=1077.47 Aligned_cols=842 Identities=44% Similarity=0.625 Sum_probs=702.3
Q ss_pred CCCCCcccccCCCCCcccC-------CCCCCCCCCcccccccceeeecccCCccccchh---------hhhhhc-ccCCc
Q 002022 30 PRKPVTNYVQQPKSAATQK-------GGRSQGKKYEEEEESEVEMLSISSGDEEVSRDR---------GLAAKN-RARGR 92 (979)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~ 92 (979)
.++||.+.+|||++....+ +..-+++.+. +|+|+|++|+|+++||+.++.+ +++++. +|+++
T Consensus 2 ~~np~~~~~q~p~vtg~s~~e~~p~t~~~ir~e~l~-~~~sd~~~l~i~g~D~lls~~~~s~~~~~~~~g~a~~~~G~~r 80 (934)
T KOG2347|consen 2 TRNPVARLAQQPRVTGLSPNEGGPGTAVTIRKEFLG-NDESDVIGLSICGGDELLSAERKSPNGIIARVGLAKREKGDIR 80 (934)
T ss_pred CCCchhhccCCccccCCCCCCCCCCcceeecCCccC-cchhhHhhhhhcccchhhhhhcCCCCccccccccccCCCCceE
Confidence 4789999999998873222 2244556677 9999999999999999877664 232332 78888
Q ss_pred cCCCCCCCCCCCCccccccHHHHHHHHHHhhhccCcccccccccccchhhcc-cccccccccCCCCCCCCCCCCCc-cch
Q 002022 93 RDDDGTWDGDEPNCWKRVDEAELARRVREMRETRTAPVAQKYEKKPSMAAGI-KGFSTLQSFPRGMECIDPLGLGI-IDN 170 (979)
Q Consensus 93 ~~~~~~~~~~~p~~w~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~DPLGl~~-~~~ 170 (979)
-.++..|+|-.|.+|.+|+.+++. +++|+..+.+| ++++.++. .+.+ ++...+|..|+++...+|+-..+ ++.
T Consensus 81 ~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~--~~~~~~~~-~~~~~~~~t~l~~~~~l~~~i~~~k~~~~~d~ 155 (934)
T KOG2347|consen 81 VTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE--QQDQRKVP-GRLKGVALTSLQSEPPLGECIEPLKLKINEDN 155 (934)
T ss_pred EeeccCccccCchhhhhhhHhhhc--cchhhhhhccc--cccccccc-ccccccCCcccccCCCcccccCchhhcchhhh
Confidence 899999999999999999999998 99999999888 66666544 3322 37777777777777777776554 333
Q ss_pred hhhhhhcccCCCCCCCCCCCCCchhhcccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 002022 171 KTLRLITDSSGSTPKSDRDNVDNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (979)
Q Consensus 171 ~~L~~~~~~~~~~P~~~~~~~~~~~r~~~~isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf 250 (979)
+ .++|.. .+|+.+++|+|+|||.++|+++||+||+.|..+|++..+..++.-+.||++||
T Consensus 156 ~------------------~lfp~~--~~Dl~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~ 215 (934)
T KOG2347|consen 156 K------------------TLFPIT--SVDLRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNF 215 (934)
T ss_pred h------------------hhcccc--ccccccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcch
Confidence 3 345544 57899999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 002022 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (979)
Q Consensus 251 ~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L 330 (979)
+.||.|++|+++|+.++++.+.+..+++|.+|.+.|+++.+.|+.+|.+|++|+++||++|+++++|+||+||||||+++
T Consensus 216 ~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~i 295 (934)
T KOG2347|consen 216 DSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNI 295 (934)
T ss_pred hHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCChH
Q 002022 331 RGSISKGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDPV 410 (979)
Q Consensus 331 ~~~I~~gdYe~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~s~~e~~~lI~lLleL~~~~dPi 410 (979)
+++|++|+|+.+|++|.|||+++..++|++|+++++|||..|+.||..|+++|.+++.+.++++++|++|.+|++++||+
T Consensus 296 er~i~kGeYd~vvndYekAKsl~~~t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~ 375 (934)
T KOG2347|consen 296 ERSIKKGEYDTVVNDYEKAKSLFGKTEVNLFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPV 375 (934)
T ss_pred hhHhhcCCceeeccchhhHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhccCCCcccccccCCCCCCCCCCCCCChhhH
Q 002022 411 WHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADYSVTCGNIQPIDSLPVELSGEEV 490 (979)
Q Consensus 411 w~~L~sq~~~I~~~le~~~~~~~~k~e~l~~~l~~~~~s~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ev 490 (979)
|.||..|++||...++.|...|+++++.++ + ++ +|.+.++.+...+.-++....+.-+ . ....++.+.
T Consensus 376 wq~I~~q~k~i~~L~~s~~~~~~~~l~~~~--~-----~~-~~~q~s~~g~~~S~t~s~~~~~~~q---~-~~~~~~~~k 443 (934)
T KOG2347|consen 376 WQCIGVQNKRILGLLESCWDDHVARLEGLR--L-----SD-KWTQPSQNGVHLSDTASSMENSQNQ---V-INEWKIREK 443 (934)
T ss_pred hhhccccchHHHhhhhhcchhHHHHhhccc--c-----cc-cccchhhcccccCchHHHHhhhhhh---h-ccchhhhhh
Confidence 999999999999999999999999999886 1 33 6666665553322111222222111 0 113344555
Q ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHhhcC-ccccccCCCccCcccccCchhhhh--hcccccccccHHHHHHHHHHH
Q 002022 491 DAFRGRYIRRLTAVLIHHIPAFWKVALSVFSG-KFAKSSQVSSESNLNASGNKAEEK--VGEGKYSIHSLDEVAGMIRNT 567 (979)
Q Consensus 491 ~~~~~~fv~~L~~vil~~lp~FWklaqs~~~G-k~~k~~~~~~~~~s~s~~~~~~~~--l~~~~~~~~~~~e~~~mi~e~ 567 (979)
...+++||++||+++++++|+|||+|++||+| +|....+... +..++.+.. +....+..|+++++..|.+-.
T Consensus 444 ~~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G~~~~~~sq~~~-----s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t 518 (934)
T KOG2347|consen 444 TPERVNFIEKLTDLLLSQLPIFWKLAISYFNGDLFSPSSQVQD-----SDINKMEQNNEVREKREVFHSLVELALMDRFT 518 (934)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHhcccccCcccccCh-----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66788999999999999999999999999999 4544443331 222222211 122345678888888888888
Q ss_pred HHHHHhhhhhhccCCccCccchHHHHHHHHHHHHHHHhhccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 002022 568 ISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGIS 647 (979)
Q Consensus 568 i~~y~~~l~~~f~~l~~~n~~~~yL~~~l~~i~~~~~~L~~~~~~P~~~~~~L~~L~~~~~~~~v~~lc~~~~~~ae~i~ 647 (979)
++.|..+...-|.+.|......+||+++++.|+.+|++|+.++.+|+++++-|+.|+.+ .+++|+|.|++..+|.|+
T Consensus 519 ~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~~~sL~ale~~P~~~lq~Iq~li~~---~rl~~~~~~~~~~~e~is 595 (934)
T KOG2347|consen 519 LSQSDGKAKSPFGDADISRSLLPWMPLAIKTVRKACQSLEALESLPHDALQPIQKLITE---ARLQCLSSWMRASTERIS 595 (934)
T ss_pred hhhhcccccCCcCCcccccccCccchhHHHHhHHHHHHHHHhhhChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 88888887777766665444448999999999999999999977998788888888777 888899999999999999
Q ss_pred ---cccCcccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhhcccccccchhHHHhHHHHHHHHHHHHHHHHHHH
Q 002022 648 ---KDETWIPVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDF 724 (979)
Q Consensus 648 ---~lEdW~~~~~~e~~~~~~~iT~LP~~Fe~~i~~~mq~i~~~~~~~~~E~~~~~di~~~l~~~~~~vr~~f~~~~~af 724 (979)
+.|+|+++.+.+|+ .++|+||.+||.+|+++|+.+..++.+..+|+. .|. .+.|++.|...+++...+|
T Consensus 596 ~l~~re~W~~~s~~~rn---~s~t~LP~~fEt~ivssl~q~~~~~l~~~gEa~----~f~-~~~~~~~i~el~I~~~~~f 667 (934)
T KOG2347|consen 596 TLAKRETWIPDSILERN---RSITYLPLAFETVIVSSLEQVNSVLLSFEGEAA----LFE-QPDMQAEIEELSISVRLAF 667 (934)
T ss_pred HHHhhhccccchhhhcc---cchhhhhHHHHHHHhhhHHhhhhHHhhcccccc----ccC-chHHHHHHHHHHHHHHHHH
Confidence 79999999887887 569999999999999999999999888887766 444 3677888888888888888
Q ss_pred HHHHHHHhhhhhcccCccccccc-----ccCCCCCCCCCccCCCCCCCCCcCceeehhhhchhHHHHhhHHHHHHHHHhh
Q 002022 725 AGHLEHIASELAQNKSNKESQHL-----QNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIGYCKDELSSELYNKYKDI 799 (979)
Q Consensus 725 ~~~Le~la~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~RLLltLSN~~~lr~~vip~L~~~fe~~ 799 (979)
.-|+|+++.-.++-. -+.+... ++++.....+.+..+.++.+++|++|||+||||++||+...+|.|.+.|+.-
T Consensus 668 l~c~e~L~~h~~~~~-~~~~q~~t~~~~~~~~~~~~qed~~~ns~~~~~~~~qrlLi~LsN~~yc~~~~~~~l~n~fk~~ 746 (934)
T KOG2347|consen 668 LNCFEDLAIHLEQIG-ADLSQLTTQIEGQNGFSNAHQEDISINSADSVVDPEQRLLIVLSNIGYCKDILAPTLLNIFKYT 746 (934)
T ss_pred HHHHHHhhhcccccC-CchhhcccccccccccccccchhhhcccccccCChhheeEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 888888886211111 1111111 3334444434444445567889999999999999999999999999999776
Q ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhcccCCCcCCCCCCCCccchHHHHHHHHHHHHHH
Q 002022 800 WLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHA 879 (979)
Q Consensus 800 ~~~~~~~~~~~~~ir~~~~~l~qLD~~Lfe~Y~~~K~~~l~~~ie~gil~~g~dW~~~p~P~~VRpYvyE~Ll~LV~VHA 879 (979)
|-...+ .+.+..++|++|+.+||+.||+.|+++|++++|||||.+||+|..+|+|++||+|++|+|++||+|||
T Consensus 747 ~~~~~k------~iE~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~~~~~~W~~~~~~~~irdYa~E~l~~lV~Vha 820 (934)
T KOG2347|consen 747 WLLSRK------NIEDISMSLSGLGSKLFENYIEDKADPIRGALEPYLLDGGIQWGMAPPVKGIRDYAKEALHNLVAVHA 820 (934)
T ss_pred hhcccc------cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhccccccccCCCccchHHHHHHHHHHHHHHHH
Confidence 655422 34445578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhhHHHHHHHHHHHHHHHHHHhhchhcccc-ccccCcchhHHHHhhHHHHHHh
Q 002022 880 EVFAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNN-LKSLDANGFCQLMLEVVYNVLI 937 (979)
Q Consensus 880 EV~t~a~~Ll~rvLs~Lve~la~elL~~f~~~~~~~-v~~f~~~G~lQAtLeiefi~q~ 937 (979)
|||++||+|+++||..+|+.++++|+++|+ | |.+|+.+|+|||++||||+.-+
T Consensus 821 Evf~iap~Ll~kiL~~~ve~i~d~L~~l~~-----~~v~s~S~nG~lQi~vdl~~l~~~ 874 (934)
T KOG2347|consen 821 EVFAIAPQLLDKILGETVEGISDELLRLFS-----CDVQSFSANGALQIMVDLEYLEDV 874 (934)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhccCCCcceeeeeeHHHHHHH
Confidence 999999999999999999999999999998 7 9999999999999999999866
No 2
>PF15469 Sec5: Exocyst complex component Sec5
Probab=100.00 E-value=1.4e-38 Score=328.06 Aligned_cols=179 Identities=42% Similarity=0.720 Sum_probs=171.2
Q ss_pred hHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCC-CCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHH
Q 002022 239 TQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEED-PEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGML 317 (979)
Q Consensus 239 ~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~-~~~~~t~~L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L 317 (979)
++++|.||++||++||+||+|||+||.+|+.++.. .+++++..|.+.|+++...++.+|.|+++++++++++++++++|
T Consensus 1 s~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 1 SEDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999876543 33467999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccCc--chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 002022 318 QRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALPS--HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLEN 395 (979)
Q Consensus 318 ~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~~--~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~s~~e~~~ 395 (979)
+|++|||+||++|++||++|+|+.||++|.||++++..+ ++++|++||.|||++|++||..||++|.+++.+.+++++
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~ 160 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLK 160 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999999999988 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHh
Q 002022 396 TVRLLLELEPESDPVWHYLNVQ 417 (979)
Q Consensus 396 lI~lLleL~~~~dPiw~~L~sq 417 (979)
+|++|++|++++||||.||.+|
T Consensus 161 ~i~~Ll~L~~~~dPi~~~l~~q 182 (182)
T PF15469_consen 161 LIRKLLELNVEEDPIWYWLESQ 182 (182)
T ss_pred HHHHHHhCCCCCCHHHHHHHcC
Confidence 9999999999999999999875
No 3
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.98 E-value=9.8e-30 Score=283.22 Aligned_cols=206 Identities=19% Similarity=0.282 Sum_probs=198.0
Q ss_pred ccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCC
Q 002022 198 KLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGS 277 (979)
Q Consensus 198 ~~~isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~ 277 (979)
..|+++++|||+.||.++.+++++++|++....|.++|+.++++||+|||+||||||+|+|||++|+++|..|+++|.+
T Consensus 25 ptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~- 103 (636)
T KOG2346|consen 25 PTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDG- 103 (636)
T ss_pred ccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhh-
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhh-ccCc
Q 002022 278 GTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSI-ALPS 356 (979)
Q Consensus 278 ~t~~L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L-~~~~ 356 (979)
|..+|..+++.+.++...|.++++.+.++-....++.+.+|+|+||.+|++|++.+.|..|++.|..|... -+|.
T Consensus 104 ----L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~ 179 (636)
T KOG2346|consen 104 ----LEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYD 179 (636)
T ss_pred ----HHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 4677
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCC
Q 002022 357 HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESD 408 (979)
Q Consensus 357 ~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~s~~e~~~lI~lLleL~~~~d 408 (979)
+.|.|+-+...+++|+..+.++|..+|+++..+.+...+++.+|+.||.+.|
T Consensus 180 ~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~d 231 (636)
T KOG2346|consen 180 GRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVD 231 (636)
T ss_pred CCCcHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChH
Confidence 7999999999999999999999999999999999999999999999987643
No 4
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.50 E-value=2.7e-12 Score=145.23 Aligned_cols=206 Identities=17% Similarity=0.277 Sum_probs=171.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhh
Q 002022 217 QNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRA 296 (979)
Q Consensus 217 ~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i 296 (979)
.+.++++|......|..++.....+++.|...||..||.+++++..+...+...... +..|.+.+.++...+...
T Consensus 5 ~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~-----l~~L~~~l~~L~~~~~~f 79 (338)
T PF04124_consen 5 TSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDS-----LDSLLDSLPELDEACQRF 79 (338)
T ss_pred ccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999998765332 334666776666655553
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-CcchhHHHHHHHHHHHHHHHH
Q 002022 297 FEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVNILKRVLEEVEKVMQEF 375 (979)
Q Consensus 297 ~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-~~~v~vf~kV~~EVE~ii~~~ 375 (979)
-...-+..++-.....++.-..+...+++||..|..||++|.|++|++-+..+++|.. +.+++++++|+.+|+..+..+
T Consensus 80 ~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 80 SSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3333333333344455666667778999999999999999999999999999999875 567999999999999999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHHHH
Q 002022 376 KAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFEKC 428 (979)
Q Consensus 376 k~~L~~kL~~~~~s~~e~~~lI~lLleL~~--~~dPiw~~L~sq~~~I~~~le~~ 428 (979)
...|..+|..+ .....+.++|.+|..++. +......||.++..|+.+.++..
T Consensus 160 l~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i 213 (338)
T PF04124_consen 160 LSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEI 213 (338)
T ss_pred HHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999888 899999999999999966 33467999999999999877644
No 5
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.04 E-value=1e-08 Score=119.28 Aligned_cols=213 Identities=16% Similarity=0.261 Sum_probs=167.5
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhH
Q 002022 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHL 282 (979)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L 282 (979)
++.| ..|+.++. ...+++|.+.-..|..++...+++++.|...||..||.+...++++|..+..++.+-.+ |
T Consensus 18 ~~~~--~~~v~~l~-~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~-----l 89 (581)
T KOG2069|consen 18 SPEM--DAYVRELT-TKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKE-----L 89 (581)
T ss_pred Cchh--HHHHHHHc-CCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHH-----H
Confidence 7778 67999988 78899999999999999999999999999999999999999999999999887654322 3
Q ss_pred HhhHHHHHHHHHhhhhhHHHhHHHHHHH----HHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-Ccc
Q 002022 283 FKLMQGVSSQANRAFEPLFERQAQAEKI----RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSH 357 (979)
Q Consensus 283 ~~~L~~i~~~a~~i~~pLle~r~Ka~kL----r~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-~~~ 357 (979)
.-.+....+.+++ ..+....+... +.++........+.+||..|.+||+.|.|+.+.+--+.+.+|-. .+.
T Consensus 90 ~l~~~~L~s~~~~----f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~ 165 (581)
T KOG2069|consen 90 SLQLPELTSPCKR----FQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGT 165 (581)
T ss_pred HHhhHHhhhHHHH----HHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccc
Confidence 3333333333333 22222222222 33444444457899999999999999999999999998988865 355
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHHHH
Q 002022 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFEKC 428 (979)
Q Consensus 358 v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~s~~e~~~lI~lLleL~~--~~dPiw~~L~sq~~~I~~~le~~ 428 (979)
++++++|..+|+..+..+-.+|..+|+.+ ....++.+.+.||..+.+ .......||..+..|+.+.++..
T Consensus 166 ~pvi~~i~~~v~~tv~~ll~qL~~~l~~p-l~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I 237 (581)
T KOG2069|consen 166 IPVIQEIATEVEQTVQKLLEQLIQQLRTP-LQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDI 237 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999988 568899999999988755 22377778888888877766554
No 6
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.83 E-value=8.2e-09 Score=94.21 Aligned_cols=70 Identities=17% Similarity=0.428 Sum_probs=67.3
Q ss_pred CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhh
Q 002022 201 YFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (979)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~ 270 (979)
+++++|||+.|+....++.|..++.+-...|..+|+..+++||.+||+||..||.|.++|..|..++...
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l 70 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSEL 70 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999998764
No 7
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=98.24 E-value=0.031 Score=67.33 Aligned_cols=198 Identities=15% Similarity=0.196 Sum_probs=146.5
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHH
Q 002022 215 VHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQAN 294 (979)
Q Consensus 215 vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~ 294 (979)
+..+-|.+++..-...++.+|+.+.++|+++|-+-|--.|.|.|||..|.+--.. |.+.|.++...+.
T Consensus 13 LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~------------L~~~I~~t~~ncr 80 (863)
T KOG2033|consen 13 LFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADK------------LASDIANTRVNCR 80 (863)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhh
Confidence 3346678999999999999999999999999999999999999999999865432 4555555544444
Q ss_pred hhh------hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-----C------cc
Q 002022 295 RAF------EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-----P------SH 357 (979)
Q Consensus 295 ~i~------~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-----~------~~ 357 (979)
.+. .|=+..++ -...+.-++.-+.|.|.++|..|..|+..+.+=.|..-|-.++.+-. + .+
T Consensus 81 sL~a~svA~tp~raeqn--p~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~ll~n 158 (863)
T KOG2033|consen 81 SLHANSVAKTPGRAEQN--PAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSMLLKN 158 (863)
T ss_pred hcccccccCCcchhhcC--chhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHHHhh
Confidence 433 22222222 23345566778899999999999999999999999999999987542 1 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCCh---HHHHHHHhHHHHHHHHHH
Q 002022 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDP---VWHYLNVQNHRIRGLFEK 427 (979)
Q Consensus 358 v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~s~~e~~~lI~lLleL~~~~dP---iw~~L~sq~~~I~~~le~ 427 (979)
.|++.+=|.-++.--.++.......|.+...+..-..+++.-+.=|+ +.|| .-.||.+++.||...++.
T Consensus 159 fP~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLd-esdpsqvLelFL~~Rk~~il~lLn~ 230 (863)
T KOG2033|consen 159 FPALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLD-ESDPSQVLELFLEKRKEHILHLLND 230 (863)
T ss_pred cHHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888877777777888888888766544333333222222 2344 358999999999999984
No 8
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.14 E-value=0.00028 Score=78.84 Aligned_cols=197 Identities=9% Similarity=0.164 Sum_probs=151.8
Q ss_pred CCCCCHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCch
Q 002022 203 SDSFNAKLFLSRVHQN--TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTA 280 (979)
Q Consensus 203 S~~FdP~~FLs~vH~~--tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~ 280 (979)
.++|||..|..+..+. .+.+++.+....|....+.-+..+-..|-.|++.|+.+-..++.+..++...-.. ..
T Consensus 10 ~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~-----~~ 84 (291)
T PF10475_consen 10 DEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVI-----CK 84 (291)
T ss_pred CCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 4599999986555544 4788888889999999999999999999999999999999999999998864221 22
Q ss_pred hHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-Ccchh
Q 002022 281 HLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVN 359 (979)
Q Consensus 281 ~L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~-~~~v~ 359 (979)
.+...|..+......---.++....|-+++..++..|+..+.+.+.=..|+..+..|||..|++-+...+.+.. ..+..
T Consensus 85 ~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~ 164 (291)
T PF10475_consen 85 NLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS 164 (291)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch
Confidence 34555555443322222346677788888999999999999999999999999999999999999999988654 46778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHhcCC
Q 002022 360 ILKRVLEEVEKVMQEFKAMLYKSMEDP--HIDLTNLENTVRLLLELE 404 (979)
Q Consensus 360 vf~kV~~EVE~ii~~~k~~L~~kL~~~--~~s~~e~~~lI~lLleL~ 404 (979)
.|+.+-..++.....+...|-..|... ..+.+.+.+++..-.-||
T Consensus 165 c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLg 211 (291)
T PF10475_consen 165 CVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLG 211 (291)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 888887777777777777777777655 344556666666433333
No 9
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.90 E-value=0.002 Score=74.68 Aligned_cols=227 Identities=13% Similarity=0.249 Sum_probs=148.8
Q ss_pred CCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-------hhhHhhhhhHHHHHHHhhhhcCCCC
Q 002022 204 DSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNF-------DCFVSCKTTIDDIESKLKRIEEDPE 275 (979)
Q Consensus 204 ~~FdP~~FLs~vH~~-tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf-------~kFI~akdTId~m~~~mk~~e~~~~ 275 (979)
++|||-.||+++.++ .|+.+|-.-+..+...|..+++++..+|.+-- ..+-.++..|..+..++.......+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999974 67899999999999999999999999998765 2344555556666555554322110
Q ss_pred CCCchhHHhhHHHHHHHHHhhhhhH--HHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhc
Q 002022 276 GSGTAHLFKLMQGVSSQANRAFEPL--FERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIA 353 (979)
Q Consensus 276 ~~~t~~L~~~L~~i~~~a~~i~~pL--le~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~ 353 (979)
. =+..+.+ |...+ |+... .+|-.++.+|+|++-|.+-=..|...+++++|.++..-+.-++.|.
T Consensus 82 ~-----sE~~V~~-------it~dIk~LD~AK--rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 82 E-----SEQMVQE-------ITRDIKQLDNAK--RNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL 147 (383)
T ss_pred H-----HHHHHHH-------HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 0111111 11111 22222 2667788999999999999999999999999999999999998875
Q ss_pred ----cCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-------CC--ChhHHHHHHHHHhcCCCC--CChHHHHHHHhH
Q 002022 354 ----LPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP-------HI--DLTNLENTVRLLLELEPE--SDPVWHYLNVQN 418 (979)
Q Consensus 354 ----~~~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~-------~~--s~~e~~~lI~lLleL~~~--~dPiw~~L~sq~ 418 (979)
.|..++-+..++..|+.+-..++.++..-+... .. .......+...+=-||+. .+.+--|+..+-
T Consensus 148 ~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL 227 (383)
T PF04100_consen 148 EHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQL 227 (383)
T ss_pred HHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHH
Confidence 367899999999999998888888877654322 01 112222333333233543 455555555555
Q ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 002022 419 HRIRGLFE-----KCTLDHEARMETLHNELH 444 (979)
Q Consensus 419 ~~I~~~le-----~~~~~~~~k~e~l~~~l~ 444 (979)
.-....+. ...+.++.|+.=++|.|.
T Consensus 228 ~eY~~iF~~~~e~~~Ld~i~RRy~Wfkr~L~ 258 (383)
T PF04100_consen 228 KEYRRIFRENDEAASLDNIDRRYAWFKRLLK 258 (383)
T ss_pred HHHHHHHcccccccchhhHHHHHHHHHHHHH
Confidence 55555551 123344555554554444
No 10
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.19 Score=62.02 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=94.0
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHH
Q 002022 211 FLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVS 290 (979)
Q Consensus 211 FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~ 290 (979)
||..+.-.- +...-...|+..|++++.++..|-..||.-||.+-+-+.+|.++.++....+.+ +...++.+.
T Consensus 36 ~lRs~~d~~---~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd-----~N~rLQ~~g 107 (800)
T KOG2176|consen 36 TLRSVYDGN---QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSD-----TNRRLQESG 107 (800)
T ss_pred HHHHHHccC---CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHH
Confidence 444444333 444556778888888999999999999999999999999999988875444332 333333332
Q ss_pred HHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHH
Q 002022 291 SQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKK 348 (979)
Q Consensus 291 ~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~k 348 (979)
..=-.....+..++..-.++-.+++.++..--++++-+++++.+++|.|=.|++.-..
T Consensus 108 ~eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~ 165 (800)
T KOG2176|consen 108 KELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLES 165 (800)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 2212233446677777778888999999999999999999999999999666655433
No 11
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.14 E-value=0.0034 Score=62.29 Aligned_cols=113 Identities=18% Similarity=0.309 Sum_probs=80.3
Q ss_pred CCCCCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCC
Q 002022 202 FSDSFNAKLFLSRVHQ-----NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEG 276 (979)
Q Consensus 202 sS~~FdP~~FLs~vH~-----~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~ 276 (979)
-+++|||..|-+.+.. +.+--++...+..|...|+..+..++.+|.+||..+++-...+..+..-+..+
T Consensus 4 l~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v------ 77 (132)
T PF10392_consen 4 LSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAV------ 77 (132)
T ss_pred CCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHH------
Confidence 3899999999999987 44566788889999999999999999999999999999999999888755443
Q ss_pred CCchhHHhhHHHHHHHHHhhhhhHHHhHHHH-------HHHHHHHHHHHHHHHHhcC
Q 002022 277 SGTAHLFKLMQGVSSQANRAFEPLFERQAQA-------EKIRSVQGMLQRFRTLFNL 326 (979)
Q Consensus 277 ~~t~~L~~~L~~i~~~a~~i~~pLle~r~Ka-------~kLr~~l~~L~R~kfLFeL 326 (979)
...+..+....+++-..+.+-.+++ .++..+..+|++--.++.|
T Consensus 78 ------~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L 128 (132)
T PF10392_consen 78 ------RSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQL 128 (132)
T ss_pred ------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444 4444555555555444433
No 12
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.14 E-value=1.2 Score=54.84 Aligned_cols=161 Identities=14% Similarity=0.232 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCC----CCchhHHhhHHHHHHHH
Q 002022 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEG----SGTAHLFKLMQGVSSQA 293 (979)
Q Consensus 218 ~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~----~~t~~L~~~L~~i~~~a 293 (979)
.-+.++|......|.+.|....++.+..|.+||..|+....+.+.+..+.+....+... .....+...+..+.
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~--- 82 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAA--- 82 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH---
Confidence 34678999999999999999999999999999999998888877777665543221100 00001111121111
Q ss_pred HhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC------cchhHHHHHHHH
Q 002022 294 NRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP------SHVNILKRVLEE 367 (979)
Q Consensus 294 ~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~------~~v~vf~kV~~E 367 (979)
..+..-+.++.....++.++++.+.+=++=..+...+..|+|-.|.+.-.+++.++.. .+..+++-+-.+
T Consensus 83 ----~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e 158 (593)
T PF06248_consen 83 ----EELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDE 158 (593)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHH
Confidence 1122333344444555555555555555447888999999999999999999987642 245777777777
Q ss_pred HHHHHHHHHHHH---HHhhcC
Q 002022 368 VEKVMQEFKAML---YKSMED 385 (979)
Q Consensus 368 VE~ii~~~k~~L---~~kL~~ 385 (979)
....-+.+...| |+++..
T Consensus 159 ~~~lr~~L~~~L~~~w~~lv~ 179 (593)
T PF06248_consen 159 YSELRENLQYQLSEEWERLVQ 179 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 777777777666 666643
No 13
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.60 E-value=0.0026 Score=63.01 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhh
Q 002022 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (979)
Q Consensus 200 ~isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~ 269 (979)
.+..++|||..||...++-.++++|...|..+.+. +.++|-.||.+||..||+--..+..+-..+..
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~---L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~ 73 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKE---LKNELIELINDDYADFVSLSTNLVGMDEKIEE 73 (133)
T ss_dssp ----------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHccHHHHHHH
Confidence 35679999999999999999999999887776655 56899999999999999988877776655544
No 14
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=2.8 Score=50.25 Aligned_cols=193 Identities=17% Similarity=0.232 Sum_probs=109.8
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCc
Q 002022 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (979)
Q Consensus 200 ~isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t 279 (979)
.+.+++||.+-|++......++++|... |.-=.+.+..+|-.|+.+-|.-||+--..+-.|-..+..++++.+.
T Consensus 27 eFmkedFdve~f~s~~R~~v~letLrdd---Lrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~q--- 100 (705)
T KOG2307|consen 27 EFMKEDFDVERFMSLARQKVDLETLRDD---LRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQ--- 100 (705)
T ss_pred hhccccCCHHHHHHHHhccCCHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHH---
Confidence 4668999999999999999999999875 4455677888999999999999999888777777666666553211
Q ss_pred hhHHhhHHHHHHHHHhhh-------hhHHHhHHHHH---HHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHh
Q 002022 280 AHLFKLMQGVSSQANRAF-------EPLFERQAQAE---KIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (979)
Q Consensus 280 ~~L~~~L~~i~~~a~~i~-------~pLle~r~Ka~---kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kA 349 (979)
|.+-|..+...-..-. ...-..|++-. .+..++..+++...++.-|.+=...+..-..+.+--+.+++
T Consensus 101 --lreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnql 178 (705)
T KOG2307|consen 101 --LREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQL 178 (705)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHH
Confidence 2222222211111111 11222223222 22334444555555555554444445555567777777777
Q ss_pred hhhccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCChhHHHHHHHHHhcCC
Q 002022 350 KSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP-----HIDLTNLENTVRLLLELE 404 (979)
Q Consensus 350 k~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~-----~~s~~e~~~lI~lLleL~ 404 (979)
+....+. ++..+..++..|+..+..|.+.|.-. ....+.+.+|.+.-.-|+
T Consensus 179 kf~a~h~----k~~l~p~~e~ria~~~~~L~qsl~~lf~eglqsa~~~l~nclriYatld 234 (705)
T KOG2307|consen 179 KFHASHL----KGSLFPHSEERIAAEKIILSQSLAVLFAEGLQSAAGDLQNCLRIYATLD 234 (705)
T ss_pred HHHHHHh----hcccCcchhhHHhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence 7654321 12233444555555555544433211 123455555555444443
No 15
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=96.49 E-value=0.014 Score=66.12 Aligned_cols=106 Identities=14% Similarity=0.221 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhhhHhHHHHHhhhcccCCCcCCCCCCCCccchHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHH
Q 002022 821 SGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAK-PLLDKTLGILVEG 899 (979)
Q Consensus 821 ~qLD~~Lfe~Y~~~K~~~l~~~ie~gil~~g~dW~~~p~P~~VRpYvyE~Ll~LV~VHAEV~t~a~-~Ll~rvLs~Lve~ 899 (979)
+.=+.+||+ -+..|.|-+.+.. .+||.+..+|++.++|+.+++..|-.+=+.+.+.-| .+-..++-..+..
T Consensus 143 ~~Ae~~I~~-lv~~KIDe~lela-------~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~h 214 (311)
T PF04091_consen 143 KAAEKRIFE-LVNSKIDEFLELA-------EYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDH 214 (311)
T ss_dssp THHHHHHHH-HHHHHHHHHHTT---------TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHhhc-------ccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344566664 4777888776543 689999999999999999999999999988776655 5777778888899
Q ss_pred HHHHHHHhhchhccccccccCcchhHHHHhhHHHHHHh
Q 002022 900 LIDTFLSLFDENQSNNLKSLDANGFCQLMLEVVYNVLI 937 (979)
Q Consensus 900 la~elL~~f~~~~~~~v~~f~~~G~lQAtLeiefi~q~ 937 (979)
+++.++..+-.. .|++|+++|+.|-.+||.|+.+.
T Consensus 215 is~~l~~~Ll~~---~vk~in~~al~~~~~Dv~~lE~f 249 (311)
T PF04091_consen 215 ISESLLDLLLSD---DVKRINMNALQNFDLDVKYLESF 249 (311)
T ss_dssp HHHHHHHHHT------------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---cccccCHHHHHHHHHHHHHHHHH
Confidence 999999999532 59999999999999999999877
No 16
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=95.84 E-value=0.088 Score=52.98 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=95.1
Q ss_pred CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchh
Q 002022 202 FSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAH 281 (979)
Q Consensus 202 sS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~~ 281 (979)
-.++|+|-..-..+.-++|. .+.+.+..+.+.-+..+..|+.+|.+||..|=++-.+--.|...+...... +..
T Consensus 17 ~~~~~~pv~~al~~ld~ss~-g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~-----i~~ 90 (142)
T PF04048_consen 17 LTDDFNPVELALSLLDDSSV-GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQER-----IRE 90 (142)
T ss_pred hcCCCcHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 37899999999999977776 488888889999999999999999999999999999988888887754332 222
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHh
Q 002022 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRG 332 (979)
Q Consensus 282 L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~ 332 (979)
+.+.|..+...=..-...|.+-..+..+.+.++.+|.....+-.+|..|..
T Consensus 91 lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 91 LKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 444444433222222334555566667788999999999999999998864
No 17
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.45 E-value=0.38 Score=59.78 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=110.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 002022 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (979)
Q Consensus 218 ~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~ 297 (979)
..+.+++...+..|+.+-+.-+..++.||..++.-|-.|-.+-.++-+.+.+-.+. +..+.++|......-+.-.
T Consensus 42 Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rer-----I~~vK~~L~~~k~ll~~~r 116 (982)
T KOG3691|consen 42 SEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRER-----IHNVKNNLEACKELLNTRR 116 (982)
T ss_pred CCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCH
Confidence 44556677788888888888899999999999999999999988887777653221 2235555554433333333
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC--cchhHHHHHHHHHHHH
Q 002022 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SHVNILKRVLEEVEKV 371 (979)
Q Consensus 298 ~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~--~~v~vf~kV~~EVE~i 371 (979)
+.|.+-..+.-+.+.++++|.....+-.+|.++..+|.++.|-+|-.--.+|.-+... ..|.+++.+-.|.+..
T Consensus 117 deLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VEgLs~l~~ele~~ 192 (982)
T KOG3691|consen 117 DELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVEGLSDLRSELEGL 192 (982)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhHHHHHHHHH
Confidence 4455666666777999999999999999999999999999999999999999887653 2345555554444433
No 18
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.41 E-value=2.7 Score=51.69 Aligned_cols=174 Identities=12% Similarity=0.206 Sum_probs=124.6
Q ss_pred CCCCCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCc
Q 002022 201 YFSDSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (979)
Q Consensus 201 isS~~FdP~~FLs~vH~~-tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t 279 (979)
+..+.|+.-.|+.++.++ .|+.++-.-...+..+|+..+..+...|..+=+.=-+.++.+++.-..+..
T Consensus 14 ~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~e---------- 83 (793)
T KOG2180|consen 14 IPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEE---------- 83 (793)
T ss_pred cCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH----------
Confidence 334899999999999865 577777777777888999999999999998777666666555555544432
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHH-------HHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhh
Q 002022 280 AHLFKLMQGVSSQANRAFEPLFERQAQA-------EKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSI 352 (979)
Q Consensus 280 ~~L~~~L~~i~~~a~~i~~pLle~r~Ka-------~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L 352 (979)
|...|.++.+.|++--.-+.+--..+ .+|-.++.+|+|..-|..==..|...+.++.|.++++-|.-.-.+
T Consensus 84 --L~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~l 161 (793)
T KOG2180|consen 84 --LFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQL 161 (793)
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHH
Confidence 44455554444433222222222222 356678889999999988888899999999999999999887776
Q ss_pred c----cCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 002022 353 A----LPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP 386 (979)
Q Consensus 353 ~----~~~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~ 386 (979)
. .|..++-+...-.-|+++=..+..++.+-+.+.
T Consensus 162 l~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~ 199 (793)
T KOG2180|consen 162 LNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAA 199 (793)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 367778788887777777777777776666443
No 19
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=94.34 E-value=21 Score=45.55 Aligned_cols=218 Identities=13% Similarity=0.210 Sum_probs=128.5
Q ss_pred CCCCCCCHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH----hhhhhHHHHHHHhhhhcC
Q 002022 201 YFSDSFNAKLFLSRVHQNTSS----ADLEAGALALKTDLKGRTQQRKQLVKDNFDCFV----SCKTTIDDIESKLKRIEE 272 (979)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~----~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI----~akdTId~m~~~mk~~e~ 272 (979)
+++++|||+.+++...+..+- ..+-.-+..|...++-..++.-.=|++.-..-+ ++.--++.|..+......
T Consensus 5 f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~ 84 (766)
T PF10191_consen 5 FSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQE 84 (766)
T ss_pred hCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 678999999999987755433 233334666666666666666666666666555 333344445444433222
Q ss_pred CCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhh-
Q 002022 273 DPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKS- 351 (979)
Q Consensus 273 ~~~~~~t~~L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~- 351 (979)
.+.. +.+.+..+...+......|.+-..=-.++..+...|+.-.-.=.|-+.+...++.|||..+-+.-...++
T Consensus 85 ~~~~-----v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~s 159 (766)
T PF10191_consen 85 QMAS-----VQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRS 159 (766)
T ss_pred HHHH-----HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2211 2222222222222222222221111134445555666666666777888888999999998877777654
Q ss_pred hccCcchhHHHHHHHHHHHHHHHHHHHHHHhhcCC------CCChhHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHHH
Q 002022 352 IALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP------HIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLF 425 (979)
Q Consensus 352 L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~------~~s~~e~~~lI~lLleL~~~~dPiw~~L~sq~~~I~~~l 425 (979)
|..-.++|- |.|-...++.++++|-..+... ..+++.+..++.++..+|-.+...-+|-.+++..|...-
T Consensus 160 L~~l~~~pd----~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W 235 (766)
T PF10191_consen 160 LAVLQDVPD----YEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLW 235 (766)
T ss_pred HHHHcCCCc----hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 322223333 3455556666666654433221 345788999999999999888888888888887777665
Q ss_pred HH
Q 002022 426 EK 427 (979)
Q Consensus 426 e~ 427 (979)
..
T Consensus 236 ~~ 237 (766)
T PF10191_consen 236 QE 237 (766)
T ss_pred HH
Confidence 43
No 20
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=81.42 E-value=11 Score=45.39 Aligned_cols=117 Identities=11% Similarity=0.104 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhcccCCCcCCCCCC-----CCccchHHHHHHHHHHHHHHHhh-ccchh
Q 002022 814 QDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPA-----VKGVRDVAVELLHTLVAVHAEVF-AGAKP 887 (979)
Q Consensus 814 r~~~~~l~qLD~~Lfe~Y~~~K~~~l~~~ie~gil~~g~dW~~~p~-----P~~VRpYvyE~Ll~LV~VHAEV~-t~a~~ 887 (979)
.+....+..|-.+..+.++..=...+...+++|.- .-.|...+. |..+.|-..++|..|-.-=+-+. ++++.
T Consensus 301 de~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k--~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~ 378 (494)
T PF04437_consen 301 DETISAYEKLRKRMLESIVDRVVKEFKASLKAYFK--RSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPA 378 (494)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT----GGGT-------------GGGHHHHHHHHHHHHHHHTS--HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 33556678888888888888888888888877775 357876653 57899999998887766555553 45777
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchhccccccccCcchhHHHHhhHHHHHHh
Q 002022 888 LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLEVVYNVLI 937 (979)
Q Consensus 888 Ll~rvLs~Lve~la~elL~~f~~~~~~~v~~f~~~G~lQAtLeiefi~q~ 937 (979)
...++-..+++.+..-+.+-.= +..+|+.+|+.|...|++.+-.+
T Consensus 379 ~f~~i~r~ia~~l~~~l~~~Il-----~~n~Fs~~Ga~Ql~~D~~~L~~~ 423 (494)
T PF04437_consen 379 DFRRIWRRIASKLDDYLWESIL-----MSNKFSRAGAAQLQFDMRALFSV 423 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT-----TTS-B-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-----hcCeeChhHHHHHHHHHHHHHHH
Confidence 8888888888888888888433 24599999999999999998755
No 21
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=69.70 E-value=2.7e+02 Score=34.07 Aligned_cols=271 Identities=14% Similarity=0.174 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCcccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhhcccccc
Q 002022 618 MVLRTLQAEITKIYIGRLCSWMQGSTDGISKDETWIPVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEAT 697 (979)
Q Consensus 618 ~~L~~L~~~~~~~~v~~lc~~~~~~ae~i~~lEdW~~~~~~e~~~~~~~iT~LP~~Fe~~i~~~mq~i~~~~~~~~~E~~ 697 (979)
+.++.|+.+-.......+..|+.+..+ ...++|.....++...+-.=.|.+|..+-.+|.+.++.+.. +..
T Consensus 199 ~~~~~L~~~Yl~~~~~~~~eW~~n~l~--~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va~~---~l~---- 269 (566)
T PF06046_consen 199 EKLEELEDDYLSRIQKKMKEWMDNILE--QEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVASE---SLQ---- 269 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHHHH---TT-----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHHHh---hhh----
Confidence 344666666666666777777776543 12567887433342222234566777777777766665521 111
Q ss_pred cchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCcccccccccCCCCCCCCCccCCCCCCCCCcCceeehh
Q 002022 698 KSEDMYAQLLEIQESVRLSFLNRFLDFAGHLEHIASELAQNKSNKESQHLQNGYSSDPCTESLSDIPGSVVDPHQRLLIV 777 (979)
Q Consensus 698 ~~~di~~~l~~~~~~vr~~f~~~~~af~~~Le~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~RLLlt 777 (979)
..++. .+-..+.+++..|...+...-.++.... ...... . . ....-..|..+
T Consensus 270 --~~v~~-------~v~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~-~---~-----------~~~~~eyliA~ 321 (566)
T PF06046_consen 270 --GKVLQ-------RVLEELANFLKSYQDAWQEFKEEHFKDR----SSVKPK-E---N-----------PPGYLEYLIAV 321 (566)
T ss_dssp --HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-C----------------S-HHHHHHHH
T ss_pred --hhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccccc-c---c-----------ccchHHHHHHH
Confidence 11222 1233334444444444443332211000 000000 0 0 00112455555
Q ss_pred hhchhHHHHhhHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhcccCCCcCCCC
Q 002022 778 ISNIGYCKDELSSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAA 857 (979)
Q Consensus 778 LSN~~~lr~~vip~L~~~fe~~~~~~~~~~~~~~~ir~~~~~l~qLD~~Lfe~Y~~~K~~~l~~~ie~gil~~g~dW~~~ 857 (979)
+.||..|+. .+..+...|......... ..-...+..+++.|..+-..-...-+..=-.-|.-.+ +.++ .-.|...
T Consensus 322 ~N~~~~~~~-~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~-~~Lf--t~~W~~~ 396 (566)
T PF06046_consen 322 ANNCLRCRD-YVESLEQKFEEKVSQKYM-ERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHF-KKLF--TKKWYSG 396 (566)
T ss_dssp HHHHHHHHH-HHHHHHHHHHTTS-HHHH-HHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHH-CTTT--SGGGCTS
T ss_pred hccHHHHHH-HHHHHHHhcccccchHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHhC--cCcCcCc
Confidence 666666665 566666666555442100 0000011112222333222211111111111111111 1111 2389888
Q ss_pred CCCCccchHHHHHHHHHHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHhhchhccccc-cccCcchhHHHHhhHHHHH
Q 002022 858 PAVKGVRDVAVELLHTLVAVHAEVFA-GAKPLLDKTLGILVEGLIDTFLSLFDENQSNNL-KSLDANGFCQLMLEVVYNV 935 (979)
Q Consensus 858 p~P~~VRpYvyE~Ll~LV~VHAEV~t-~a~~Ll~rvLs~Lve~la~elL~~f~~~~~~~v-~~f~~~G~lQAtLeiefi~ 935 (979)
+.+..++.++--....... +.+++...++..+.+.+..+.++++.+++.+|= ..-...+.=|-+-|++=+.
T Consensus 397 -------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~ 469 (566)
T PF06046_consen 397 -------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLK 469 (566)
T ss_dssp --------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHH
Confidence 7888888888777777878 899999999999999999999999987654221 2335667777778888776
Q ss_pred Hh
Q 002022 936 LI 937 (979)
Q Consensus 936 q~ 937 (979)
+.
T Consensus 470 ~~ 471 (566)
T PF06046_consen 470 SF 471 (566)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 22
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=67.67 E-value=65 Score=39.45 Aligned_cols=142 Identities=20% Similarity=0.299 Sum_probs=84.3
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC--cchh
Q 002022 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SHVN 359 (979)
Q Consensus 282 L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~--~~v~ 359 (979)
|-.+|..+...-...+-|.+..+- +-.+++++--||.+ |.+-+..|.+|-.|+.. ...+
T Consensus 110 lf~nIssi~~fh~qfllp~l~~r~-------Iadv~qKlAPFLKm------------YseY~knydrA~~L~~~lt~rsp 170 (623)
T KOG4424|consen 110 LFGNISSIHNFHGQFLLPELEKRI-------IADVFQKLAPFLKM------------YSEYAKNYDRALKLFQTLTSRSP 170 (623)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhH-------HHHHHHHhhhHHHH------------HHHHHhcchhHHHHHHHHHhhCh
Confidence 444555555554455556555544 55677888888755 88888899999988864 3459
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHH-HHhcCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002022 360 ILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVR-LLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARMET 438 (979)
Q Consensus 360 vf~kV~~EVE~ii~~~k~~L~~kL~~~~~s~~e~~~lI~-lLleL~~~~dPiw~~L~sq~~~I~~~le~~~~~~~~k~e~ 438 (979)
.|++|.++|++.-.-=.-.|..-|..|---+.-++=++. ||+.| +++||=|.=+...-+-|...-. .......++|.
T Consensus 171 ~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~l-p~~d~D~~d~~ksLe~I~~aA~-HsNaai~k~E~ 248 (623)
T KOG4424|consen 171 QFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYL-PPDDPDYKDLKKSLELISTAAS-HSNAAITKMER 248 (623)
T ss_pred HHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhC-CCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 999999999987655555565666555322333333333 33333 4556666555544333333322 22334455577
Q ss_pred HHHHHH
Q 002022 439 LHNELH 444 (979)
Q Consensus 439 l~~~l~ 444 (979)
+++-+.
T Consensus 249 ~~kLle 254 (623)
T KOG4424|consen 249 LQKLLE 254 (623)
T ss_pred HHHHHH
Confidence 665544
No 23
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=65.69 E-value=2.7e+02 Score=34.08 Aligned_cols=154 Identities=14% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHH-----HHHHHHHhhhhcc--
Q 002022 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDL-----AVREYKKAKSIAL-- 354 (979)
Q Consensus 282 L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~-----aV~dY~kAk~L~~-- 354 (979)
+..-|..+..++..+..-|-.|+.-.++|...+ .=.-+|..|.+.|-.|+-+. ++..+.|-.....
T Consensus 47 iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i-------~~i~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~ 119 (508)
T PF04129_consen 47 ISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFI-------DDIVIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQ 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHcCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 555666667777777666666666556665544 33459999999999998765 2333333332222
Q ss_pred -CcchhHHHHHHHHHH----HHHHHHHHHHHHh---hcCCCCChhH-HHHHHHHHhcCCCCCChHHHHHHHhHHHHHHHH
Q 002022 355 -PSHVNILKRVLEEVE----KVMQEFKAMLYKS---MEDPHIDLTN-LENTVRLLLELEPESDPVWHYLNVQNHRIRGLF 425 (979)
Q Consensus 355 -~~~v~vf~kV~~EVE----~ii~~~k~~L~~k---L~~~~~s~~e-~~~lI~lLleL~~~~dPiw~~L~sq~~~I~~~l 425 (979)
.....+.+.+..+.+ +.++.+|+-|..+ |+.+.....- |..+++ -.+...||..++..+-..+
T Consensus 120 ~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~~LLk--------~~~~~~FL~~~~~~~a~El 191 (508)
T PF04129_consen 120 SFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQVLLK--------YKELFQFLKKHSPELAKEL 191 (508)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHh--------hHHHHHHHHHhhHHHHHHH
Confidence 233455555555555 3333334433333 3444322221 113322 3568888888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 002022 426 EKCTLDHEARMETLHNELHERAMSDAR 452 (979)
Q Consensus 426 e~~~~~~~~k~e~l~~~l~~~~~s~~~ 452 (979)
...+.+...+ ......+.|+.+..+
T Consensus 192 ~~~Yv~tM~~--~Y~~~F~~Y~~~L~k 216 (508)
T PF04129_consen 192 RQAYVETMSW--YYSSYFKRYIRSLEK 216 (508)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 6666655433 223344455555554
No 24
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.84 E-value=4.4e+02 Score=34.34 Aligned_cols=124 Identities=15% Similarity=0.208 Sum_probs=79.9
Q ss_pred hhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 002022 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (979)
Q Consensus 251 ~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L 330 (979)
+.|.-|..+.+++..++.+.-+ -+..|.++|..+....-.-...+++-..+-.+....+..|+-...+.+--..+
T Consensus 268 dsFfha~~~~~~Lq~~~~d~~~-----~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~v 342 (951)
T KOG2115|consen 268 DSFFHAMTSLHNLQKELRDTMS-----EVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTV 342 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5788888999999888876322 14458888887755433322233333333333333344444445566666778
Q ss_pred HhhhhcCChHHHHHHHHHhhhhcc---CcchhHHHHHHHHHHHHHHHHHHHH
Q 002022 331 RGSISKGEFDLAVREYKKAKSIAL---PSHVNILKRVLEEVEKVMQEFKAML 379 (979)
Q Consensus 331 ~~~I~~gdYe~aV~dY~kAk~L~~---~~~v~vf~kV~~EVE~ii~~~k~~L 379 (979)
...++.+||..|++..+--..++. -..+..|+..|.+.-.....+-..+
T Consensus 343 q~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~ 394 (951)
T KOG2115|consen 343 QLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKML 394 (951)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHH
Confidence 888999999999999887777655 2457888888887765544443333
No 25
>PF14923 CCDC142: Coiled-coil protein 142
Probab=58.56 E-value=1.5e+02 Score=35.60 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=59.6
Q ss_pred cCCCcCCCCC---CCCccchHHHHHHHHHHHHHHHhhc-cchh----hHHHHHHHHHHHHHHHHHHhhchhccccccccC
Q 002022 849 DSGVQWGAAP---AVKGVRDVAVELLHTLVAVHAEVFA-GAKP----LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLD 920 (979)
Q Consensus 849 ~~g~dW~~~p---~P~~VRpYvyE~Ll~LV~VHAEV~t-~a~~----Ll~rvLs~Lve~la~elL~~f~~~~~~~v~~f~ 920 (979)
-.|--|.-.. -|.....||-.++-+++.==-|... ..+. .+..+|..++|.-.+-++. + + -||+
T Consensus 257 P~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~---~-k----IKFS 328 (450)
T PF14923_consen 257 PSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILM---H-K----IKFS 328 (450)
T ss_pred CCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHH---c-c----ceee
Confidence 4456787665 4678899998888877653333322 1222 3444555555544444332 2 2 2999
Q ss_pred cchhHHHHhhHHHHHHhccchhhhHHHHHHhhh
Q 002022 921 ANGFCQLMLEVVYNVLISSLKRSSIQLLIFSKV 953 (979)
Q Consensus 921 ~~G~lQAtLeiefi~q~~~~~~s~~~~~i~~~~ 953 (979)
..|++|.+.|..++..--++..+.+...+=+++
T Consensus 329 ~~GAlQL~~DF~~Vr~wl~~e~~~Ls~e~rq~L 361 (450)
T PF14923_consen 329 LQGALQLRQDFGYVRDWLESECSGLSPELRQTL 361 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHH
Confidence 999999999999998775555555443333333
No 26
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=56.89 E-value=1.8e+02 Score=31.97 Aligned_cols=82 Identities=10% Similarity=0.094 Sum_probs=71.3
Q ss_pred CCcCCCCCCCCccchHHHHHHHHHHHHHHHh------hccchhhHHHHHHHHHHHHHHHHHHhhchhccccccccCcchh
Q 002022 851 GVQWGAAPAVKGVRDVAVELLHTLVAVHAEV------FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGF 924 (979)
Q Consensus 851 g~dW~~~p~P~~VRpYvyE~Ll~LV~VHAEV------~t~a~~Ll~rvLs~Lve~la~elL~~f~~~~~~~v~~f~~~G~ 924 (979)
.+.|+-.-.+++-.|||..++-.+-.....+ ..+.+++...+..+++.-+.+.|++.|. .|++-+.+|-
T Consensus 78 ~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s-----~vkKCs~eGR 152 (234)
T PF10474_consen 78 NVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYS-----RVKKCSNEGR 152 (234)
T ss_pred HcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----hccCCChhhH
Confidence 5689999999999999999999998888888 4556778888999999999999999998 4899999999
Q ss_pred HHHHhhHHHHHHh
Q 002022 925 CQLMLEVVYNVLI 937 (979)
Q Consensus 925 lQAtLeiefi~q~ 937 (979)
.+--||+.-+...
T Consensus 153 alM~lD~q~~~~~ 165 (234)
T PF10474_consen 153 ALMQLDFQQLQNK 165 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 8888898877644
No 27
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=49.37 E-value=1.6e+02 Score=34.19 Aligned_cols=23 Identities=17% Similarity=-0.032 Sum_probs=15.5
Q ss_pred cccccccCCCCCCCCCCCCCccc
Q 002022 147 FSTLQSFPRGMECIDPLGLGIID 169 (979)
Q Consensus 147 ~~~~~~~p~~~~~~DPLGl~~~~ 169 (979)
+.+-...|..+-..+|||++.+-
T Consensus 209 r~n~d~dp~s~s~e~~l~~~~E~ 231 (377)
T KOG1945|consen 209 RMNDDGDPPSDSEEPPLGPSQEP 231 (377)
T ss_pred hhhccCCCcccccccCCcccccc
Confidence 33444566666677999998774
No 28
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=47.59 E-value=60 Score=32.12 Aligned_cols=55 Identities=9% Similarity=0.124 Sum_probs=41.2
Q ss_pred CcCCCCCCCCccchHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHHHHHHHHH
Q 002022 852 VQWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLS 906 (979)
Q Consensus 852 ~dW~~~p~P~~VRpYvyE~Ll~LV~VHAEV-~t~a~~Ll~rvLs~Lve~la~elL~ 906 (979)
+-|-.-|.|+...+||-.+|..|-..+... ..+.+.....++..+++.+++.++.
T Consensus 22 YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~ 77 (125)
T PF12022_consen 22 YRMTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYE 77 (125)
T ss_pred hhccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999988 4455555566555555555544443
No 29
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=46.47 E-value=4.2e+02 Score=28.77 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhh
Q 002022 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKT 258 (979)
Q Consensus 220 S~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akd 258 (979)
++..++.....+...=.+....|...|++.+.+|..-..
T Consensus 61 a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~ 99 (236)
T cd07651 61 SLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT 99 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777788888888888888889999999988865543
No 30
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=45.12 E-value=2.2e+02 Score=33.32 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=30.7
Q ss_pred HhhhhcCChHHHHHHHHHhhhhccC------------cchhHHHHHHHHHHHHHH
Q 002022 331 RGSISKGEFDLAVREYKKAKSIALP------------SHVNILKRVLEEVEKVMQ 373 (979)
Q Consensus 331 ~~~I~~gdYe~aV~dY~kAk~L~~~------------~~v~vf~kV~~EVE~ii~ 373 (979)
.++.++|.|++|+++|.++..+.-+ -.+..|.-.-.+|+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3557899999999999998876542 234556656667776654
No 31
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.73 E-value=62 Score=41.36 Aligned_cols=179 Identities=11% Similarity=0.081 Sum_probs=119.8
Q ss_pred CchhhcccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhc
Q 002022 192 DNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIE 271 (979)
Q Consensus 192 ~~~~r~~~~isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e 271 (979)
..++|..++-.+..|++..|..-.|..-+ .|..++..+.. +....-.+..++.-|+.++.... -.+.++..++.+.
T Consensus 76 ~G~~r~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~-~~~~~~~~~~~~~~~~t~l~~~~-~l~~~i~~~k~~~ 151 (934)
T KOG2347|consen 76 KGDIRVTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE-QQDQRKVPGRLKGVALTSLQSEP-PLGECIEPLKLKI 151 (934)
T ss_pred CCceEEeeccCccccCchhhhhhhHhhhc--cchhhhhhccc-ccccccccccccccCCcccccCC-CcccccCchhhcc
Confidence 44566677788999999999999998777 78888877776 55566667777777887777766 4444444443321
Q ss_pred --------CCCCCCCchhHHhhHHHHHHHHHhhh--hhHHHhHHHH---HHHHHHHHHHHHHHHHhcCchhhHhhhhcCC
Q 002022 272 --------EDPEGSGTAHLFKLMQGVSSQANRAF--EPLFERQAQA---EKIRSVQGMLQRFRTLFNLPSTIRGSISKGE 338 (979)
Q Consensus 272 --------~~~~~~~t~~L~~~L~~i~~~a~~i~--~pLle~r~Ka---~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gd 338 (979)
..+++. | ...=| ++++.+--+. +.|+..+ .-+|+-|+.|...+.++-+++
T Consensus 152 ~~d~~~lfp~~~~D----l----------~se~Fspkw~L~enH~~ts~edLk~~i---~~lK~~~n~~~~~~~~lvK~n 214 (934)
T KOG2347|consen 152 NEDNKTLFPITSVD----L----------RSEHFSPKWFLLENHQDTSFEDLKAGI---LNLKRDLNGRKEGSLQLVKDN 214 (934)
T ss_pred hhhhhhhccccccc----c----------ccccCChhHHHHhhhhhccHHHHHHHH---HHHHHhhcchhhhhHHHHhcc
Confidence 111110 1 11112 2334333333 4555544 556788999999999999999
Q ss_pred hHHHHHHHHHhhhhcc-------CcchhHHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhH
Q 002022 339 FDLAVREYKKAKSIAL-------PSHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTN 392 (979)
Q Consensus 339 Ye~aV~dY~kAk~L~~-------~~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~s~~e 392 (979)
++.+|.+|...-.+-. +-+-....++|.-++... .....+|+.+..-....+.
T Consensus 215 ~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~-s~ad~iF~~vl~Rk~~ADs 274 (934)
T KOG2347|consen 215 FDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNST-SRADLIFEDVLERKDKADS 274 (934)
T ss_pred hhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhh-hHHHHHHHHHHhccccccc
Confidence 9999999998665421 234566677888888877 8888999988765433333
No 32
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.19 E-value=21 Score=35.27 Aligned_cols=75 Identities=29% Similarity=0.348 Sum_probs=41.3
Q ss_pred cccccCCCCCCCCCCCCCcc-------chhhhhhhc-ccCCCCCCCCCCCCCchhhcccCCCCCCCCHHHHHHHhcCC--
Q 002022 149 TLQSFPRGMECIDPLGLGII-------DNKTLRLIT-DSSGSTPKSDRDNVDNSLREKLMYFSDSFNAKLFLSRVHQN-- 218 (979)
Q Consensus 149 ~~~~~p~~~~~~DPLGl~~~-------~~~~L~~~~-~~~~~~P~~~~~~~~~~~r~~~~isS~~FdP~~FLs~vH~~-- 218 (979)
-+|-+||...- ||||++.. |...+=-+. -+..|.|...+..+--.--..-+|.|++| ++||+..-+.
T Consensus 28 LL~pvpR~~nR-~~LGl~~~~lpf~G~DiW~~YElSwLn~~G~PqVaig~~~ip~dS~NlIESKSF--KLYLNSfNqt~f 104 (137)
T COG2904 28 LLQPVPRSLNR-DPLGLTANNLPFHGADIWTLYELSWLNAKGLPQVAIGTVYIPADSPNLIESKSF--KLYLNSFNQTKF 104 (137)
T ss_pred HhccCccccCc-cccccccCCCCccccchhhhhhhhhhccCCCceEEEEEEEecCCCccccccchh--hhhhhhcchHhh
Confidence 35788997655 99999755 222111111 12356675544332111112457999999 9999876632
Q ss_pred CCHHHHHH
Q 002022 219 TSSADLEA 226 (979)
Q Consensus 219 tS~~dL~~ 226 (979)
+++++|.+
T Consensus 105 ~s~e~v~~ 112 (137)
T COG2904 105 ASWEEVRQ 112 (137)
T ss_pred ccHHHHHH
Confidence 34444444
No 33
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=43.69 E-value=4.9e+02 Score=28.78 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhhhHHHhHHHHHHH-HHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccCcchhHHHHH
Q 002022 286 MQGVSSQANRAFEPLFERQAQAEKI-RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALPSHVNILKRV 364 (979)
Q Consensus 286 L~~i~~~a~~i~~pLle~r~Ka~kL-r~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~~~~v~vf~kV 364 (979)
+..+....+.+....-....++.++ ..+-.++++-+.|...=..+...|. .++.+......-.......-+.+.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~-----~l~~~~~~l~~~~~~~~~~~l~~~ 128 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ-----ELIEQVESLNENGDQLPSEDLQRA 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhCcccCCCCHHHHHHH
Confidence 3333333333333333344444444 2344444454444444344444443 222222211111113345779999
Q ss_pred HHHHHHHHHHHHHHH
Q 002022 365 LEEVEKVMQEFKAML 379 (979)
Q Consensus 365 ~~EVE~ii~~~k~~L 379 (979)
..|++.++.+||..=
T Consensus 129 l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998873
No 34
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.39 E-value=1.8e+02 Score=33.28 Aligned_cols=89 Identities=18% Similarity=0.282 Sum_probs=54.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc------------CcchhHHHHHHHHHH
Q 002022 302 ERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL------------PSHVNILKRVLEEVE 369 (979)
Q Consensus 302 e~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~~------------~~~v~vf~kV~~EVE 369 (979)
+.+.++++|+.-= .+.++.++|..||..|.+|..|.- +..+.-+..-|++|+
T Consensus 76 e~~~~AE~LK~eG----------------N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce 139 (304)
T KOG0553|consen 76 EDKALAESLKNEG----------------NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCE 139 (304)
T ss_pred hHHHHHHHHHHHH----------------HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 5677777775421 245788999999999999999752 234444556677777
Q ss_pred HHHH--HHHHHHHHhhcCCCCChhH---HHHHHHHHhcCCCC
Q 002022 370 KVMQ--EFKAMLYKSMEDPHIDLTN---LENTVRLLLELEPE 406 (979)
Q Consensus 370 ~ii~--~~k~~L~~kL~~~~~s~~e---~~~lI~lLleL~~~ 406 (979)
.-+. .--.+.|.||--.-..... ..+....=|+|+|+
T Consensus 140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 6543 3445566666444333333 33333344566665
No 35
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=39.67 E-value=5.5e+02 Score=28.24 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhh
Q 002022 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (979)
Q Consensus 220 S~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~ 269 (979)
|+.+++.+.+.+.++.....+.|..-|-+++..++..+..+++-+.+...
T Consensus 66 sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~ 115 (237)
T cd07657 66 SWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQ 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999988876654
No 36
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=36.59 E-value=5.1e+02 Score=31.63 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH--HHHHHhhcCCCCCh-hHHHHHHHHHhcCCCCCChHHHHHHHh---------HHHHHHHHHHHHHHH
Q 002022 365 LEEVEKVMQEFK--AMLYKSMEDPHIDL-TNLENTVRLLLELEPESDPVWHYLNVQ---------NHRIRGLFEKCTLDH 432 (979)
Q Consensus 365 ~~EVE~ii~~~k--~~L~~kL~~~~~s~-~e~~~lI~lLleL~~~~dPiw~~L~sq---------~~~I~~~le~~~~~~ 432 (979)
++=|+-+++.|- .+||..+.....+. -+.+++...|.+|+....--|+||.+- +.++..+|..|-..+
T Consensus 517 hHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI 596 (817)
T KOG1925|consen 517 HHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRI 596 (817)
T ss_pred HHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 444555555553 35666654433332 356778888888988888889999873 455667777766544
No 37
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.57 E-value=28 Score=43.72 Aligned_cols=18 Identities=11% Similarity=0.279 Sum_probs=9.3
Q ss_pred HHHHHHhcCCCCHHHHHHHH
Q 002022 209 KLFLSRVHQNTSSADLEAGA 228 (979)
Q Consensus 209 ~~FLs~vH~~tS~~dL~~gl 228 (979)
..||..+. -++++++..+
T Consensus 705 sIflgS~r--mpyeeik~~I 722 (1102)
T KOG1924|consen 705 SIFLGSFR--MPYEEIKNVI 722 (1102)
T ss_pred HHHHhhcc--CCHHHHHHHH
Confidence 44555222 6666666554
No 38
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.83 E-value=30 Score=27.33 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.0
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 002022 333 SISKGEFDLAVREYKKAKSIA 353 (979)
Q Consensus 333 ~I~~gdYe~aV~dY~kAk~L~ 353 (979)
++..++|++|+.||.+|-.+.
T Consensus 11 sle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 11 SLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 477899999999999987764
No 39
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.58 E-value=2.4e+02 Score=35.90 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhh--hhhhHhh-hhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 002022 221 SADLEAGALALKTDLKGRTQQRKQLVKDN--FDCFVSC-KTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (979)
Q Consensus 221 ~~dL~~gl~~L~r~I~~~~~~LK~LV~eN--f~kFI~a-kdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~ 297 (979)
..||...+..|+++++.+.+.+..|..+. +-+|... ..-++.+...+..++++ +.+|+++|..=+...-.+|
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk-----~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDK-----NQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHH
Confidence 46777788888889999999888888866 4444321 11234444444433322 3457777766455556799
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhh
Q 002022 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSI 334 (979)
Q Consensus 298 ~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I 334 (979)
..|.+.+.+.+-..+. +.+|-+.|.+|-.+|.+-+
T Consensus 622 saLg~akrq~ei~~~~--~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQ--LRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999988888776554 4677788888887777654
No 40
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=31.27 E-value=4.7e+02 Score=27.64 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHH
Q 002022 227 GALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQ 306 (979)
Q Consensus 227 gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLle~r~K 306 (979)
.+..|...|..+.+.++.| ++|+..|-.+++...... .+..+.+.| +.+...+-+.+++
T Consensus 80 el~~ld~~i~~l~ek~q~l-----------~~t~s~veaEik~L~s~L---t~eemQe~i-------~~L~kev~~~~er 138 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSL-----------QQTCSYVEAEIKELSSAL---TTEEMQEEI-------QELKKEVAGYRER 138 (201)
T ss_pred HHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhc---ChHHHHHHH-------HHHHHHHHHHHHH
Confidence 3455677777777777765 456777777776532211 122233333 3344445556666
Q ss_pred HHHHHHHH
Q 002022 307 AEKIRSVQ 314 (979)
Q Consensus 307 a~kLr~~l 314 (979)
+.+++...
T Consensus 139 l~~~k~g~ 146 (201)
T KOG4603|consen 139 LKNIKAGT 146 (201)
T ss_pred HHHHHHhc
Confidence 66666554
No 41
>KOG0412 consensus Golgi transport complex COD1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.22 E-value=1.2e+03 Score=29.78 Aligned_cols=203 Identities=12% Similarity=0.156 Sum_probs=114.6
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHH-HHhhhhcCCCC--CCCc
Q 002022 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIE-SKLKRIEEDPE--GSGT 279 (979)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~-~~mk~~e~~~~--~~~t 279 (979)
.-.|-|..-...+...+.+.++.+.+..+.++-+..+++|-.|+.+ ..+|+.-. ..+..+...+- .+..
T Consensus 15 ~~~~~~e~~~eli~d~t~i~qi~~~le~~~~ee~~~~~~L~~lL~q--------~~~ie~~~~~~l~r~~~~L~~v~~da 86 (773)
T KOG0412|consen 15 GHGSKPEKVGELIRDLTDISQIDLLLERIAREEARVDKDLEALLSQ--------QQTIEGENMSALTRSAENLLTVEGDA 86 (773)
T ss_pred ccCcccHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hcchhhhHHHHHHHhhhhhhhhhccH
Confidence 3344444444455555688999999999999888888888777664 33444300 11221111110 1123
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchh---hHhhhhcCChHHHHHHHHHhhhhccC-
Q 002022 280 AHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPST---IRGSISKGEFDLAVREYKKAKSIALP- 355 (979)
Q Consensus 280 ~~L~~~L~~i~~~a~~i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~---L~~~I~~gdYe~aV~dY~kAk~L~~~- 355 (979)
.+|...|.++...|+.+...+-..--.-.+ +.+.|++-+.+-+|... +.++|+..||+.|-.-..|...+-..
T Consensus 87 ~el~~~i~nt~~lAe~Vs~kVr~lDla~~R---v~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~ 163 (773)
T KOG0412|consen 87 KELTDAIKNTCVLAETVSGKVRALDLAQNR---VNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQAL 163 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHH
Confidence 568888888888888866655322221122 44456666666665544 55789999999999888888776221
Q ss_pred ------cchhHHHHH---HHHHHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHhcCCCCC---ChHHHHHHH
Q 002022 356 ------SHVNILKRV---LEEVEKVMQEFKAMLYKSMEDP--HIDLTNLENTVRLLLELEPES---DPVWHYLNV 416 (979)
Q Consensus 356 ------~~v~vf~kV---~~EVE~ii~~~k~~L~~kL~~~--~~s~~e~~~lI~lLleL~~~~---dPiw~~L~s 416 (979)
..+.....| +.-..+.-+.++.-+|+++... .-+..+..+++++--=+|.+. +.-|.||-.
T Consensus 164 i~~~~~~~~~~ts~i~~~~~~L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~ 238 (773)
T KOG0412|consen 164 IESRFAKQVVPTSEISDPYETLKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQ 238 (773)
T ss_pred HhhhhhhccCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHH
Confidence 111111112 2223334445555566666444 223567777777654445443 556777653
No 42
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=28.00 E-value=48 Score=41.77 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=6.9
Q ss_pred ccccccHHHHH
Q 002022 106 CWKRVDEAELA 116 (979)
Q Consensus 106 ~w~~v~~~~l~ 116 (979)
-|-+|+++-|+
T Consensus 644 FWvkv~Edk~e 654 (1102)
T KOG1924|consen 644 FWVKVNEDKLE 654 (1102)
T ss_pred eeeecchhhcc
Confidence 47777776553
No 43
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.00 E-value=7.1e+02 Score=30.17 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHhhcCcccccc
Q 002022 496 RYIRRLTAVLIHHIPAFWKVALSVFSGKFAKSS 528 (979)
Q Consensus 496 ~fv~~L~~vil~~lp~FWklaqs~~~Gk~~k~~ 528 (979)
+--+.+-.-|+.+||.||..-.+||...|+...
T Consensus 171 ~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~ 203 (460)
T KOG3771|consen 171 QVFEELNNELLEELPALYSSRVGFFVPTFQSLF 203 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHH
Confidence 344667777999999999999999999987543
No 44
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.88 E-value=63 Score=30.03 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 002022 204 DSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (979)
Q Consensus 204 ~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf 250 (979)
..|+-..|-.- +++++.|...|++|++..+.+.+.|+.|+.+|=
T Consensus 21 ~e~~~~E~~~i---ns~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 21 DEFDEEEYAAI---NSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred ccccHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555554332 678999999999999999999999999999984
No 45
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=27.55 E-value=6.4e+02 Score=28.83 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=58.7
Q ss_pred CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCch
Q 002022 201 YFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTA 280 (979)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~e~~~~~~~t~ 280 (979)
|-+..=+.+.||.++|+ ++...|......-+.++.+|+.||. +|-++++++..++...++....++. -|.
T Consensus 239 Ie~~~~~~~~~Ldklh~-----eit~~LEkI~SREK~lNnqL~~l~q----~fr~a~~~lse~~e~y~q~~~gv~~-rT~ 308 (384)
T KOG0972|consen 239 IEQKVGNVGPYLDKLHK-----EITKALEKIASREKSLNNQLASLMQ----KFRRATDTLSELREKYKQASVGVSS-RTE 308 (384)
T ss_pred HHHhhcchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHH-HHH
Confidence 44555677999999995 5666777777777888888888874 7999999999888887765444432 355
Q ss_pred hHHhhHHHHHH
Q 002022 281 HLFKLMQGVSS 291 (979)
Q Consensus 281 ~L~~~L~~i~~ 291 (979)
.|.+.|.++..
T Consensus 309 ~L~eVm~e~E~ 319 (384)
T KOG0972|consen 309 TLDEVMDEIEQ 319 (384)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 46
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=1.3e+02 Score=35.61 Aligned_cols=58 Identities=19% Similarity=0.289 Sum_probs=47.0
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhh
Q 002022 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (979)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~~ 270 (979)
=+-|+|+-|.+.++.--.++.|...+..+. .+...+=++.|-..+| |++++|.+|+++
T Consensus 282 lE~F~pk~FvsrlLGmGDi~glvek~~ev~--~~d~~el~~kl~~gkF--------tlrd~y~Qfq~i 339 (483)
T KOG0780|consen 282 LEPFDPKPFVSRLLGMGDIEGLVEKVQEVG--KDDAKELVEKLKQGKF--------TLRDFYDQFQNI 339 (483)
T ss_pred cCCCChHHHHHHHhccccHHHHHHHHHHHh--hhhHHHHHHHHHhCCc--------cHHHHHHHHHHH
Confidence 468999999999999999999999998888 4445555555555555 899999999874
No 47
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=27.34 E-value=9.9e+02 Score=27.45 Aligned_cols=72 Identities=18% Similarity=0.284 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhh--hhccCcchhHHHHHHHH---------HHHHHHHHHHHHHH
Q 002022 313 VQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAK--SIALPSHVNILKRVLEE---------VEKVMQEFKAMLYK 381 (979)
Q Consensus 313 ~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk--~L~~~~~v~vf~kV~~E---------VE~ii~~~k~~L~~ 381 (979)
+..+++..=-.+..|-.+..||+-.-|=..+..|.... ..|....-..++++..+ +-+.|+-+|..++.
T Consensus 156 ~~~ml~~Li~~L~~~l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~~~~~~lkr~iei~R~~~fd 235 (338)
T PF04124_consen 156 LQQMLSQLINQLRTPLKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKSDPYRYLKRYIEIYREHLFD 235 (338)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555668899999999998777777776665443 12222222333333333 33455556666655
Q ss_pred hhc
Q 002022 382 SME 384 (979)
Q Consensus 382 kL~ 384 (979)
.+.
T Consensus 236 iit 238 (338)
T PF04124_consen 236 IIT 238 (338)
T ss_pred HHH
Confidence 553
No 48
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=26.38 E-value=48 Score=31.90 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHhhhcccCCCcCCCCCC
Q 002022 818 MSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPA 859 (979)
Q Consensus 818 ~~l~qLD~~Lfe~Y~~~K~~~l~~~ie~gil~~g~dW~~~p~ 859 (979)
..+..++..+= .-+.+...+.++...=|+++|+||...|.
T Consensus 58 ~~l~~~~~~lk--~~r~~~~v~k~v~q~lI~gSgVdWa~D~~ 97 (106)
T PF05837_consen 58 EKLEKLEKELK--KSRQRWRVMKNVFQALIVGSGVDWAEDPK 97 (106)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCcccCHH
Confidence 34555555542 34677788888988889999999999864
No 49
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=26.33 E-value=3.9e+02 Score=26.94 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=50.8
Q ss_pred CCCCCHHHHHH-----HhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHH----H--HhhhhhhHhhhhhHHHHHHHhhhh
Q 002022 203 SDSFNAKLFLS-----RVHQNTSSADLEAGALALKTDLKGRTQQRKQL----V--KDNFDCFVSCKTTIDDIESKLKRI 270 (979)
Q Consensus 203 S~~FdP~~FLs-----~vH~~tS~~dL~~gl~~L~r~I~~~~~~LK~L----V--~eNf~kFI~akdTId~m~~~mk~~ 270 (979)
-+.+|+.-|+. +.|=+...+.+...-+.|...|++-+..+-.+ + ..+|.+|..+-..|+.|...+...
T Consensus 21 leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~ 99 (131)
T PF10158_consen 21 LEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRC 99 (131)
T ss_pred HHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777776 66767778888888888988777776665433 3 578889998888888888887653
No 50
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=25.12 E-value=1.5e+02 Score=25.83 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.2
Q ss_pred cCChHHHHHHHHHhhhhc
Q 002022 336 KGEFDLAVREYKKAKSIA 353 (979)
Q Consensus 336 ~gdYe~aV~dY~kAk~L~ 353 (979)
.|+|+.|++.|..|-.++
T Consensus 18 ~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYL 35 (69)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 799999999999998765
No 51
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=24.80 E-value=55 Score=21.87 Aligned_cols=12 Identities=67% Similarity=0.662 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHH
Q 002022 5 SDEDELLQMALK 16 (979)
Q Consensus 5 ~~~~~~~~~~~~ 16 (979)
++||+-||+||+
T Consensus 1 ~~Ed~~L~~Al~ 12 (18)
T PF02809_consen 1 MDEDEDLQRALE 12 (18)
T ss_dssp SHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 368889999986
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.54 E-value=1.2e+03 Score=28.87 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=50.1
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhc--cCcchhHHHHHHHHHHHHHH
Q 002022 296 AFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIA--LPSHVNILKRVLEEVEKVMQ 373 (979)
Q Consensus 296 i~~pLle~r~Ka~kLr~~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~dY~kAk~L~--~~~~v~vf~kV~~EVE~ii~ 373 (979)
+...-.+.++++.+++..+.-++|.-.--+||+.=...+. .|..+-+...+...-+ ++=++..+.+-+.++...+.
T Consensus 409 Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~--~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~ 486 (569)
T PRK04778 409 LRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE--MFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVE 486 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 4445556667777777777777777666777774444442 3444444444433322 23456777777788888877
Q ss_pred HHHHHH
Q 002022 374 EFKAML 379 (979)
Q Consensus 374 ~~k~~L 379 (979)
.+..+.
T Consensus 487 ~L~~q~ 492 (569)
T PRK04778 487 TLEEET 492 (569)
T ss_pred HHHHHH
Confidence 777765
No 53
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=24.28 E-value=53 Score=39.90 Aligned_cols=64 Identities=22% Similarity=0.087 Sum_probs=30.5
Q ss_pred cCCCCCCCCCCcccccccceeeecccCCccccchhhh---hhhcccCC--ccCCCCCCCCC-CCCccccc
Q 002022 47 QKGGRSQGKKYEEEEESEVEMLSISSGDEEVSRDRGL---AAKNRARG--RRDDDGTWDGD-EPNCWKRV 110 (979)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~-~p~~w~~v 110 (979)
+|=+..+-.-.++||++|-+|....+..|....++.. ...+.++. ..+||.+|+.. -|++-.+|
T Consensus 447 ~ryA~s~l~~d~~ee~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~dDle~~~~~~~~t~~~~ 516 (518)
T KOG2568|consen 447 QRYAFSPLSDDDEEEEEEESLDLLESLTEGAKSRADKRKSLGKADPNKALNFEDDLEEVEEEIPSTSADV 516 (518)
T ss_pred cccccccccCCcchhhhhhhhhhcccccccCccccccccccccccccchhchhhhhhcccccCccccccC
Confidence 3444333333333444556666666655543333221 11112221 22578888544 78876554
No 54
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=24.25 E-value=1e+03 Score=26.40 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhh
Q 002022 219 TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (979)
Q Consensus 219 tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk~ 269 (979)
.++.+++.+.+.+.+......+++..-|-+++.+++.=+..+++-|.++..
T Consensus 65 ~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~ 115 (234)
T cd07686 65 KSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQ 115 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999998888743
No 55
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=23.70 E-value=57 Score=23.77 Aligned_cols=12 Identities=67% Similarity=0.747 Sum_probs=10.2
Q ss_pred cHHHHHHHHHHH
Q 002022 6 DEDELLQMALKE 17 (979)
Q Consensus 6 ~~~~~~~~~~~~ 17 (979)
+|||.||+||++
T Consensus 1 ~EDe~Lq~Ai~l 12 (26)
T smart00726 1 DEDEDLQLALEL 12 (26)
T ss_pred ChHHHHHHHHHH
Confidence 578899999987
No 56
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=23.20 E-value=9.8e+02 Score=25.93 Aligned_cols=41 Identities=5% Similarity=-0.050 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhh
Q 002022 219 TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTT 259 (979)
Q Consensus 219 tS~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdT 259 (979)
.++..+......+.+.-.+..+.+..-|.+.+..|+.....
T Consensus 65 ~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~ 105 (251)
T cd07653 65 KAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQ 105 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777777888888888888889888886644
No 57
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.85 E-value=1.9e+02 Score=26.29 Aligned_cols=47 Identities=17% Similarity=0.270 Sum_probs=33.9
Q ss_pred hcCChHHHHHHHHHhhhhcc-----Cc---chhHHHHHHHHHHHHHHHHHHHHHH
Q 002022 335 SKGEFDLAVREYKKAKSIAL-----PS---HVNILKRVLEEVEKVMQEFKAMLYK 381 (979)
Q Consensus 335 ~~gdYe~aV~dY~kAk~L~~-----~~---~v~vf~kV~~EVE~ii~~~k~~L~~ 381 (979)
+.|+|+.|+..|..|-.+|. .. -...++.-..+.-..++.++..|-+
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46999999999999987653 12 2355666667777777777777644
No 58
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.38 E-value=5.6e+02 Score=27.33 Aligned_cols=20 Identities=30% Similarity=0.441 Sum_probs=10.6
Q ss_pred hHHHhHHHHHHHHHHHHHHH
Q 002022 299 PLFERQAQAEKIRSVQGMLQ 318 (979)
Q Consensus 299 pLle~r~Ka~kLr~~l~~L~ 318 (979)
|+..-..++..+|..+++|+
T Consensus 200 pv~~La~qir~irRlve~le 219 (222)
T KOG4514|consen 200 PVEQLAQQIRQIRRLVEMLE 219 (222)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444445556666665554
No 59
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.28 E-value=1.7e+03 Score=28.26 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhh
Q 002022 221 SADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLK 268 (979)
Q Consensus 221 ~~dL~~gl~~L~r~I~~~~~~LK~LV~eNf~kFI~akdTId~m~~~mk 268 (979)
++.+...-..|...-.++...++.++++=...|...+.+-..++..+.
T Consensus 49 ~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v 96 (611)
T KOG2398|consen 49 WLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGV 96 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445555556666666666777777777777777777766666665554
No 60
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=21.80 E-value=75 Score=23.08 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.8
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 002022 333 SISKGEFDLAVREYKKAKSIA 353 (979)
Q Consensus 333 ~I~~gdYe~aV~dY~kAk~L~ 353 (979)
+...|+|+.|+..|.+|..+.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 11 YFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHhCCchHHHHHHHHHHHHC
Confidence 466899999999999997764
No 61
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.30 E-value=1.1e+03 Score=27.85 Aligned_cols=118 Identities=8% Similarity=0.151 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCchh--hHhh---hhcCChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHH----HHH
Q 002022 307 AEKIRSVQGMLQRFRTLFNLPST--IRGS---ISKGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQE----FKA 377 (979)
Q Consensus 307 a~kLr~~l~~L~R~kfLFeLP~~--L~~~---I~~gdYe~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~----~k~ 377 (979)
+.-|..+.++++-|+-+=++|.- |.+. |+..=.+++..||..+=.-............+.++..++.. +|.
T Consensus 137 a~~L~av~~L~~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~ 216 (383)
T PF04100_consen 137 ASLLQAVKELLEHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVRE 216 (383)
T ss_pred HHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHH
Confidence 35567777888888888888842 2222 33333467777777642111112223345566666666666 444
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHhcCCCCCChHH-HHHHHhHHHHHHHHHHHHHHH
Q 002022 378 MLYKSMEDPHIDLTNLENTVRLLLELEPESDPVW-HYLNVQNHRIRGLFEKCTLDH 432 (979)
Q Consensus 378 ~L~~kL~~~~~s~~e~~~lI~lLleL~~~~dPiw-~~L~sq~~~I~~~le~~~~~~ 432 (979)
.|-..+.+. -+.++..+. ++.++..| +-+..+..|+...|..-..+|
T Consensus 217 ~li~wf~~~--qL~eY~~iF------~~~~e~~~Ld~i~RRy~Wfkr~L~~~e~~~ 264 (383)
T PF04100_consen 217 ELIDWFCNK--QLKEYRRIF------RENDEAASLDNIDRRYAWFKRLLKNFEEKF 264 (383)
T ss_pred HHHHHHHHH--HHHHHHHHH------cccccccchhhHHHHHHHHHHHHHHHHhhc
Confidence 444443331 122222222 24444444 567779999999987655444
No 62
>PRK10548 flagellar biosynthesis protein FliT; Provisional
Probab=21.26 E-value=5.4e+02 Score=25.53 Aligned_cols=33 Identities=12% Similarity=0.388 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcCchhhHhhhhcCChHHHHHH
Q 002022 313 VQGMLQRFRTLFNLPSTIRGSISKGEFDLAVRE 345 (979)
Q Consensus 313 ~l~~L~R~kfLFeLP~~L~~~I~~gdYe~aV~d 345 (979)
...+|..++-|..|...|....+.|++|.++..
T Consensus 4 ~~~ll~~Yq~I~~lS~~ML~aA~~g~Wd~Li~l 36 (121)
T PRK10548 4 APHLLSAWQQILTLSQSMLRLATEGQWDELIEQ 36 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence 346788999999999999999999999999875
No 63
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=20.79 E-value=80 Score=23.85 Aligned_cols=20 Identities=20% Similarity=0.506 Sum_probs=15.6
Q ss_pred hhhcCChHHHHHHHHHhhhh
Q 002022 333 SISKGEFDLAVREYKKAKSI 352 (979)
Q Consensus 333 ~I~~gdYe~aV~dY~kAk~L 352 (979)
+.+.|+|+.|+..|.++-.+
T Consensus 9 ~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 9 YRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHCT-HHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 45789999999999997654
No 64
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.29 E-value=1.1e+03 Score=25.86 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=27.4
Q ss_pred CChHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHh
Q 002022 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKS 382 (979)
Q Consensus 337 gdYe~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~k~~L~~k 382 (979)
.+|..+|..|+..+.-+...-..+|.++..==+..|..||..||.-
T Consensus 164 ~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y 209 (261)
T cd07648 164 DEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASY 209 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777665543333445555444455666667666643
No 65
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.23 E-value=2.2e+02 Score=26.01 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=28.0
Q ss_pred hcCChHHHHHHHHHhhhhccC---------cchhHHHHHHHHHHHHHHHHHHHH
Q 002022 335 SKGEFDLAVREYKKAKSIALP---------SHVNILKRVLEEVEKVMQEFKAML 379 (979)
Q Consensus 335 ~~gdYe~aV~dY~kAk~L~~~---------~~v~vf~kV~~EVE~ii~~~k~~L 379 (979)
+.|+|++|+..|..|-.++.. +....+..-..|.-..++.++..|
T Consensus 18 ~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999876531 222333444455555555555543
No 66
>PF05750 Rubella_Capsid: Rubella capsid protein; InterPro: IPR008819 Rubella virus is an enveloped positive-strand RNA virus of the family Togaviridae. Virions are composed of three structural proteins: a capsid and two membrane-spanning glycoproteins, E2 and E1. During virus assembly, the capsid interacts with genomic RNA to form nucleocapsids. It has been discovered that capsid phosphorylation serves to negatively regulate binding of viral genomic RNA. This may delay the initiation of nucleocapsid assembly until sufficient amounts of virus glycoproteins accumulate at the budding site and/or prevent non-specific binding to cellular RNA when levels of genomic RNA are low. It follows that at a late stage in replication, the capsid may undergo dephosphorylation before nucleocapsid assembly occurs []. This family is found together with IPR008820 from INTERPRO and IPR008821 from INTERPRO.; GO: 0016021 integral to membrane, 0019013 viral nucleocapsid
Probab=20.20 E-value=1.4e+02 Score=31.37 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhh---hhccCCCCCCCC
Q 002022 9 ELLQMALKEQAQR---RVVYDTPQPRKP 33 (979)
Q Consensus 9 ~~~~~~~~~~~~~---~~~~~~~~~~~~ 33 (979)
|=||.||+.|+.- ++.-....+|.|
T Consensus 10 edlqkaleaqsralraelaagasqsrrp 37 (300)
T PF05750_consen 10 EDLQKALEAQSRALRAELAAGASQSRRP 37 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 5589999888632 333334445555
Done!