BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002024
(979 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 46.2 bits (108), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 448 SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEF 507
+V L +L+ L +C + + E+P RL+HL L LD QL IPHG +L L
Sbjct: 106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHA 164
Query: 508 YMWNTFKNWDCE 519
Y++ WDCE
Sbjct: 165 YLFG--NPWDCE 174
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 59/264 (22%)
Query: 11 IFESRKSIV---KQLLEALNNENVSVIGLCGMGGVGKTTLAKE----------------- 50
IF +RK +V +Q L LN E + + GM G GK+ LA E
Sbjct: 125 IFVTRKKLVHAIQQKLWKLNGEP-GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH 183
Query: 51 ---IGKQVQESKRYDTVVMAVVSHNLSIVKIQGE-IAAVLGLTICGIEESARAGYLWERI 106
IGKQ D + + NL + Q E + L L I E A+ +
Sbjct: 184 WVSIGKQ-------DKSGLLMKLQNLCMRLDQEESFSQRLPLNI----EEAKDRLRVLML 232
Query: 107 KMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ-MDAQKIFIVRTL 165
+ R L+ILDDVW+ L+ D++ C ILLT+R + V + M + + V +
Sbjct: 233 RKHPRSLLILDDVWDPWVLKAF------DNQ-CQILLTTRDKSVTDSVMGPKHVVPVESG 285
Query: 166 LEEESWI----LFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVW 221
L E + LF ++ DL + A + +C G P+ + +G L++ N++ +
Sbjct: 286 LGREKGLEILSLF-----VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAY 340
Query: 222 I------DAAQQLKKSTPTNIEGM 239
++++KS+ + E +
Sbjct: 341 YLRQLQNKQFKRIRKSSSYDYEAL 364
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 63/264 (23%), Positives = 108/264 (40%), Gaps = 59/264 (22%)
Query: 11 IFESRKSIV---KQLLEALNNENVSVIGLCGMGGVGKTTLAKE----------------- 50
+F +RK +V +Q L L E + + GM G GK+ LA E
Sbjct: 125 VFVTRKKLVNAIQQKLSKLKGEP-GWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVH 183
Query: 51 ---IGKQVQESKRYDTVVMAVVSHNLSIVKIQGE-IAAVLGLTICGIEESARAGYLWERI 106
+GKQ D + + NL Q E + L L I E A+ +
Sbjct: 184 WVSVGKQ-------DKSGLLMKLQNLCTRLDQDESFSQRLPLNI----EEAKDRLRILML 232
Query: 107 KMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ-MDAQKIFIVRTL 165
+ R L+ILDDVW+ L+ C ILLT+R + V + M + + V +
Sbjct: 233 RKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVESS 285
Query: 166 LEEESWI----LFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVW 221
L +E + LF ++ +DL A + +C G P+ + +G L++ N++ +
Sbjct: 286 LGKEKGLEILSLF-----VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEY 340
Query: 222 I------DAAQQLKKSTPTNIEGM 239
++++KS+ + E +
Sbjct: 341 YLKQLQNKQFKRIRKSSSYDYEAL 364
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 106/257 (41%), Gaps = 45/257 (17%)
Query: 11 IFESRKSIV---KQLLEALNNENVSVIGLCGMGGVGKTTLAKEI-------------GKQ 54
+F +RK +V +Q L L E + + GM G GK+ LA E G
Sbjct: 131 VFVTRKKLVNAIQQKLSKLKGE-PGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVH 189
Query: 55 VQESKRYDTVVMAVVSHNLSIVKIQGE-IAAVLGLTICGIEESARAGYLWERIKMEKRIL 113
+ D + + NL Q E + L L I E A+ ++ R L
Sbjct: 190 WVSVGKQDKSGLLMKLQNLCTRLDQDESFSQRLPLNI----EEAKDRLRILMLRKHPRSL 245
Query: 114 VILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ-MDAQKIFIVRTLLEEESWI 172
+ILDDVW+ L+ C ILLT+R + V + M + + V + L +E +
Sbjct: 246 LILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL 298
Query: 173 ----LFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWI------ 222
LF ++ +DL A + +C G P+ + +G L++ N++ +
Sbjct: 299 EILSLF-----VNMKKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQN 353
Query: 223 DAAQQLKKSTPTNIEGM 239
++++KS+ + E +
Sbjct: 354 KQFKRIRKSSSYDYEAL 370
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 111/264 (42%), Gaps = 59/264 (22%)
Query: 11 IFESRKSIV---KQLLEALNNENVSVIGLCGMGGVGKTTLAKE----------------- 50
IF +RK +V +Q L LN E + + GM G GK+ LA E
Sbjct: 132 IFVTRKKLVHAIQQKLWKLNGEP-GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVH 190
Query: 51 ---IGKQVQESKRYDTVVMAVVSHNLSIVKIQGE-IAAVLGLTICGIEESARAGYLWERI 106
IGKQ D + + NL + Q E + L L I E A+ +
Sbjct: 191 WVSIGKQ-------DKSGLLMKLQNLCMRLDQEESFSQRLPLNI----EEAKDRLRVLML 239
Query: 107 KMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ-MDAQKIFIVRTL 165
+ R L+ILDDVW+ L+ D++ C ILLT+ + V + M + + V +
Sbjct: 240 RKHPRSLLILDDVWDPWVLKAF------DNQ-CQILLTTSDKSVTDSVMGPKHVVPVESG 292
Query: 166 LEEESWI----LFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVW 221
L E + LF ++ DL + A + +C G P+ + +G L++ N++ +
Sbjct: 293 LGREKGLEILSLF-----VNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAY 347
Query: 222 I------DAAQQLKKSTPTNIEGM 239
++++KS+ + E +
Sbjct: 348 YLRQLQNKQFKRIRKSSSYDYEAL 371
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 449 VIGELSNLEILSLCRSSIKEIP----ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL 504
V L+ L L+L + + +P + +L+HL L H QL IP GV L L
Sbjct: 59 VFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL----HINQLKSIPMGVFDNLKSL 114
Query: 505 EEFYMWNTFKNWDCE 519
Y++N WDCE
Sbjct: 115 THIYLFNN--PWDCE 127
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 449 VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEF 507
V L NL+ L + + IP F +L+ L LDL+ L IP G L L
Sbjct: 52 VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHI 110
Query: 508 YMWNTFKNWDCE 519
Y++N WDCE
Sbjct: 111 YLYNN--PWDCE 120
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 41/95 (43%), Gaps = 27/95 (28%)
Query: 449 VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCR------------------ 488
+ LS+LE+L + +S +E +P+ F L +L LDL C+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 489 -----QLALIPHGVISQLDKLEEFYMWNTFKNWDC 518
QL +P G+ +L L++ +W WDC
Sbjct: 500 NMASNQLKSVPDGIFDRLTSLQK--IWLHTNPWDC 532
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 444 LGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDK 503
+ D++ +G L+NL+ LSL + +K+I T L++L LDL + + L P +S L K
Sbjct: 210 ISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP---LSGLTK 265
Query: 504 LEEFYMW-NTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT 559
L E + N N + L LT LTNL + Q L P +L N T
Sbjct: 266 LTELKLGANQISN--------ISPLAGLTALTNLELNENQ---LEDISPISNLKNLT 311
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 106/286 (37%), Gaps = 46/286 (16%)
Query: 439 LEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDL--DHCRQLALIPHG 496
+ + + D++ + L+NL L+L + I +I + L++L L+L + ++ + G
Sbjct: 96 MNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISAL-SG 153
Query: 497 VIS--------QLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPS 548
+ S Q+ L+ T + D +N KV ++ L +LTNL N+ +
Sbjct: 154 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISD 212
Query: 549 HMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSE 608
P L N + D S N + + +PL G K
Sbjct: 213 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK------- 265
Query: 609 FLFLHEF-IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667
L E +G I G T L L L N LE +P NL LT
Sbjct: 266 ---LTELKLGANQISNISPLAGLTALTNLELNE--------NQLEDISPISNLKNLTYLT 314
Query: 668 IYSNHSFVEICHGQVLPAGSFNKLKRL--------DVKWCQNILNI 705
+Y N+ + P S KL+RL DV N+ NI
Sbjct: 315 LYFNN------ISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNI 354
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 444 LGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDK 503
+ D++ +G L+NL+ LSL + +K+I T L++L LDL + + L P +S L K
Sbjct: 211 ISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP---LSGLTK 266
Query: 504 LEEFYMW-NTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT 559
L E + N N + L LT LTNL + Q L P +L N T
Sbjct: 267 LTELKLGANQISN--------ISPLAGLTALTNLELNENQ---LEDISPISNLKNLT 312
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 106/286 (37%), Gaps = 46/286 (16%)
Query: 439 LEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDL--DHCRQLALIPHG 496
+ + + D++ + L+NL L+L + I +I + L++L L+L + ++ + G
Sbjct: 97 MNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISAL-SG 154
Query: 497 VIS--------QLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPS 548
+ S Q+ L+ T + D +N KV ++ L +LTNL N+ +
Sbjct: 155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISD 213
Query: 549 HMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSE 608
P L N + D S N + + +PL G K
Sbjct: 214 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK------- 266
Query: 609 FLFLHEF-IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667
L E +G I G T L L L N LE +P NL LT
Sbjct: 267 ---LTELKLGANQISNISPLAGLTALTNLELNE--------NQLEDISPISNLKNLTYLT 315
Query: 668 IYSNHSFVEICHGQVLPAGSFNKLKRL--------DVKWCQNILNI 705
+Y N+ + P S KL+RL DV N+ NI
Sbjct: 316 LYFNN------ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 355
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 444 LGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDK 503
+ D++ +G L+NL+ LSL + +K+I T L++L LDL + + L P +S L K
Sbjct: 206 ISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP---LSGLTK 261
Query: 504 LEEFYMW-NTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT 559
L E + N N + L LT LTNL + Q L P +L N T
Sbjct: 262 LTELKLGANQISN--------ISPLAGLTALTNLELNENQ---LEDISPISNLKNLT 307
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 106/286 (37%), Gaps = 46/286 (16%)
Query: 439 LEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDL--DHCRQLALIPHG 496
+ + + D++ + L+NL L+L + I +I + L++L L+L + ++ + G
Sbjct: 92 MNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISAL-SG 149
Query: 497 VIS--------QLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPS 548
+ S Q+ L+ T + D +N KV ++ L +LTNL N+ +
Sbjct: 150 LTSLQQLNFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISD 208
Query: 549 HMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSE 608
P L N + D S N + + +PL G K
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK------- 261
Query: 609 FLFLHEF-IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667
L E +G I G T L L L N LE +P NL LT
Sbjct: 262 ---LTELKLGANQISNISPLAGLTALTNLELNE--------NQLEDISPISNLKNLTYLT 310
Query: 668 IYSNHSFVEICHGQVLPAGSFNKLKRL--------DVKWCQNILNI 705
+Y N+ + P S KL+RL DV N+ NI
Sbjct: 311 LYFNN------ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 350
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 16/117 (13%)
Query: 444 LGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDK 503
+ D++ +G L+NL+ LSL + +K+I T L++L LDL + + L P +S L K
Sbjct: 206 ISDITPLGILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP---LSGLTK 261
Query: 504 LEEFYMW-NTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT 559
L E + N N + L LT LTNL + Q L P +L N T
Sbjct: 262 LTELKLGANQISN--------ISPLAGLTALTNLELNENQ---LEDISPISNLKNLT 307
Score = 33.5 bits (75), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 67/286 (23%), Positives = 106/286 (37%), Gaps = 46/286 (16%)
Query: 439 LEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDL--DHCRQLALIPHG 496
+ + + D++ + L+NL L+L + I +I + L++L L+L + ++ + G
Sbjct: 92 MNNNQIADITPLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISAL-SG 149
Query: 497 VIS--------QLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPS 548
+ S Q+ L+ T + D +N KV ++ L +LTNL N+ +
Sbjct: 150 LTSLQQLNFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISD 208
Query: 549 HMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSE 608
P L N + D S N + + +PL G K
Sbjct: 209 ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK------- 261
Query: 609 FLFLHEF-IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667
L E +G I G T L L L N LE +P NL LT
Sbjct: 262 ---LTELKLGANQISNISPLAGLTALTNLELNE--------NQLEDISPISNLKNLTYLT 310
Query: 668 IYSNHSFVEICHGQVLPAGSFNKLKRL--------DVKWCQNILNI 705
+Y N+ + P S KL+RL DV N+ NI
Sbjct: 311 LYFNN------ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 350
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 99/278 (35%), Gaps = 47/278 (16%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L + + D+ + L+NL L L ++I +I L+ L L+ + L P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPLA 170
Query: 497 VISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLP 556
++ L++L D +N KV ++ L +LTNL N+ + P L
Sbjct: 171 NLTTLERL------------DISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGILT 217
Query: 557 NFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEF- 615
N + D S N + + +PL G K L E
Sbjct: 218 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK----------LTELK 267
Query: 616 IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFV 675
+G I G T L L L N LE +P NL LT+Y N+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNE--------NQLEDISPISNLKNLTYLTLYFNN--- 316
Query: 676 EICHGQVLPAGSFNKLKRL--------DVKWCQNILNI 705
+ P S KL+RL DV N+ NI
Sbjct: 317 ---ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 41/221 (18%)
Query: 362 FEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPD-KFFQGMKDLKVXXXXXXX 420
+LTG++L +N I ++ + L L L N+ I D G+ L+
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT---ISDISALSGLTSLQQLNFSSNQ 162
Query: 421 XXXXXXXXXXXXXXRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPE--------- 471
R L + + D+SV+ +L+NLE L + I +I
Sbjct: 163 VTDLKPLANLTTLER-LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 472 ------------TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMW-NTFKNWDC 518
T L++L LDL + + L P +S L KL E + N N
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--- 275
Query: 519 ETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT 559
+ L LT LTNL + Q L P +L N T
Sbjct: 276 -----ISPLAGLTALTNLELNENQ---LEDISPISNLKNLT 308
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 448 SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEE 506
V L+ L+ L L + ++ IP F +L++L L L QL +PHG +L KL+
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL-STNQLQSVPHGAFDRLGKLQT 183
Query: 507 FYMW-NTFKNWDCET 520
++ N F CET
Sbjct: 184 ITLFGNQFDCSRCET 198
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.34, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 435 RTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALI 493
R L L L D+S + EL+NL L L + ++ +P F +L++L L L QL +
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSL 124
Query: 494 PHGVISQLDKLEEFYMWN 511
P GV +L L Y+++
Sbjct: 125 PDGVFDKLTNLTYLYLYH 142
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 449 VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCR--QLALIPHGVISQLDKL 504
+ LS+LE+L + +S +E +P+ F L +L LDL C+ QL+ +S L L
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499
Query: 505 ----EEFYMWNTFKNWDCETNAKVVEL---QALTRLTNLMFHFP 541
F+ +TF + C + +V++ +T + HFP
Sbjct: 500 NMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFP 542
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 98/278 (35%), Gaps = 47/278 (16%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L + + D+ + L+NL L L ++I +I L+ L L + L P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPLA 170
Query: 497 VISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLP 556
++ L++L D +N KV ++ L +LTNL N+ + P L
Sbjct: 171 NLTTLERL------------DISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGILT 217
Query: 557 NFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEF- 615
N + D S N + + +PL G K L E
Sbjct: 218 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK----------LTELK 267
Query: 616 IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFV 675
+G I G T L L L N LE +P NL LT+Y N+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNE--------NQLEDISPISNLKNLTYLTLYFNN--- 316
Query: 676 EICHGQVLPAGSFNKLKRL--------DVKWCQNILNI 705
+ P S KL+RL DV N+ NI
Sbjct: 317 ---ISDISPVSSLTKLQRLFFSNNKVSDVSSLANLTNI 351
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 41/221 (18%)
Query: 362 FEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPD-KFFQGMKDLKVXXXXXXX 420
+LTG++L +N I ++ + L L L N+ I D G+ L+
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT---ISDISALSGLTSLQQLSFSSNQ 162
Query: 421 XXXXXXXXXXXXXXRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPE--------- 471
R L + + D+SV+ +L+NLE L + I +I
Sbjct: 163 VTDLKPLANLTTLER-LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 472 ------------TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMW-NTFKNWDC 518
T L++L LDL + + L P +S L KL E + N N
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--- 275
Query: 519 ETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT 559
+ L LT LTNL + Q L P +L N T
Sbjct: 276 -----ISPLAGLTALTNLELNENQ---LEDISPISNLKNLT 308
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 67/278 (24%), Positives = 98/278 (35%), Gaps = 47/278 (16%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L + + D+ + L+NL L L ++I +I L+ L L + L P
Sbjct: 112 LTLFNNQITDIDPLKNLTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPLA 170
Query: 497 VISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLP 556
++ L++L D +N KV ++ L +LTNL N+ + P L
Sbjct: 171 NLTTLERL------------DISSN-KVSDISVLAKLTNLESLIATNNQISDITPLGILT 217
Query: 557 NFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEF- 615
N + D S N + + +PL G K L E
Sbjct: 218 NLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK----------LTELK 267
Query: 616 IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFV 675
+G I G T L L L N LE +P NL LT+Y N+
Sbjct: 268 LGANQISNISPLAGLTALTNLELNE--------NQLEDISPISNLKNLTYLTLYFNN--- 316
Query: 676 EICHGQVLPAGSFNKLKRL--------DVKWCQNILNI 705
+ P S KL+RL DV N+ NI
Sbjct: 317 ---ISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNI 351
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 81/221 (36%), Gaps = 41/221 (18%)
Query: 362 FEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPD-KFFQGMKDLKVXXXXXXX 420
+LTG++L +N I ++ + L L L N+ I D G+ L+
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT---ISDISALSGLTSLQQLSFSSNQ 162
Query: 421 XXXXXXXXXXXXXXRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPE--------- 471
R L + + D+SV+ +L+NLE L + I +I
Sbjct: 163 VTDLKPLANLTTLER-LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDE 221
Query: 472 ------------TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMW-NTFKNWDC 518
T L++L LDL + + L P +S L KL E + N N
Sbjct: 222 LSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISN--- 275
Query: 519 ETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT 559
+ L LT LTNL + Q L P +L N T
Sbjct: 276 -----ISPLAGLTALTNLELNENQ---LEDISPISNLKNLT 308
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L+ C L L V G L L L L + ++ +P L L +LD+ R L +P G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG 118
Query: 497 VISQLDKLEEFYM 509
+ L +L+E Y+
Sbjct: 119 ALRGLGELQELYL 131
Score = 32.0 bits (71), Expect = 1.7, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 34.3 bits (77), Expect = 0.36, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L+ C L L V G L L L L + ++ +P L L +LD+ R L +P G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG 118
Query: 497 VISQLDKLEEFYM 509
+ L +L+E Y+
Sbjct: 119 ALRGLGELQELYL 131
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L+ C L L V G L L L L + ++ +P L L +LD+ R L +P G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG 118
Query: 497 VISQLDKLEEFYM 509
+ L +L+E Y+
Sbjct: 119 ALRGLGELQELYL 131
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L+ C L L V G L L L L + ++ +P L L +LD+ R L +P G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG 118
Query: 497 VISQLDKLEEFYM 509
+ L +L+E Y+
Sbjct: 119 ALRGLGELQELYL 131
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L+ C L L V G L L L L + ++ +P L L +LD+ R L +P G
Sbjct: 61 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG 119
Query: 497 VISQLDKLEEFYM 509
+ L +L+E Y+
Sbjct: 120 ALRGLGELQELYL 132
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 151 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 449 VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCR--QLALIPHGVISQLDKL 504
+ LS+LE+L + +S +E +P+ F L +L LDL C+ QL+ +S L L
Sbjct: 464 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523
Query: 505 ----EEFYMWNTFKNWDCETNAKVVEL---QALTRLTNLMFHFP 541
F+ +TF + C + +V++ +T + HFP
Sbjct: 524 NMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFP 566
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L+ C L L V G L L L L + ++ +P L L +LD+ R L +P G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG 118
Query: 497 VISQLDKLEEFYM 509
+ L +L+E Y+
Sbjct: 119 ALRGLGELQELYL 131
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.43, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHG 496
L L+ C L L V G L L L L + ++ +P L L +LD+ R L +P G
Sbjct: 60 LNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLG 118
Query: 497 VISQLDKLEEFYM 509
+ L +L+E Y+
Sbjct: 119 ALRGLGELQELYL 131
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%)
Query: 449 VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCR--QLALIPHGVISQLDKL 504
+ LS+LE+L + +S +E +P+ F L +L LDL C+ QL+ +S L L
Sbjct: 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204
Query: 505 ----EEFYMWNTFKNWDCETNAKVVEL---QALTRLTNLMFHFP 541
F+ +TF + C + +V++ +T + HFP
Sbjct: 205 NMSHNNFFSLDTFP-YKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 448 SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEE 506
V L+ L+ L L + ++ IP F +L++L L L QL +PHG +L KL+
Sbjct: 125 GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL-STNQLQSVPHGAFDRLGKLQT 183
Query: 507 FYMW-NTFKNWDCE 519
++ N F CE
Sbjct: 184 ITLFGNQFDCSRCE 197
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 365 LTGISLMSNYIHEVPAML--ECPKLQVLLLQENSPLVIPDKFF 405
L +SL +N + E+PA L L LLLQENS IP FF
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.3 bits (72), Expect = 1.4, Method: Composition-based stats.
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 435 RTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALI 493
R L L L D+S + EL+NL L L + ++ +P F +L++L L L QL +
Sbjct: 66 RYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE-NQLQSL 124
Query: 494 PHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILP 547
P GV DKL N N ++ K V LT LT L + Q LP
Sbjct: 125 PDGV---FDKLTNLTYLNLAHN-QLQSLPKGV-FDKLTNLTELDLSYNQLQSLP 173
>pdb|2HDW|A Chain A, Crystal Structure Of Hypothetical Protein Pa2218 From
Pseudomonas Aeruginosa
pdb|2HDW|B Chain B, Crystal Structure Of Hypothetical Protein Pa2218 From
Pseudomonas Aeruginosa
Length = 367
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 22 LLEALNNENVSVIGLCGMGGVGKTTLA--KEIGKQVQESKRYDTVVMAVVSHNLSIV 76
LL +N E + VIG+CG GG+ +A K + K V S YD + +N S+
Sbjct: 164 LLPEVNRERIGVIGICGWGGMALNAVAVDKRV-KAVVTSTMYDMTRVMSKGYNDSVT 219
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,536,823
Number of Sequences: 62578
Number of extensions: 965454
Number of successful extensions: 2324
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 2291
Number of HSP's gapped (non-prelim): 72
length of query: 979
length of database: 14,973,337
effective HSP length: 108
effective length of query: 871
effective length of database: 8,214,913
effective search space: 7155189223
effective search space used: 7155189223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)