Query 002024
Match_columns 979
No_of_seqs 339 out of 4270
Neff 10.2
Searched_HMMs 46136
Date Thu Mar 28 14:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002024.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002024hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.3E-69 7.1E-74 633.0 40.8 682 13-818 161-863 (889)
2 PLN03210 Resistant to P. syrin 100.0 8.8E-60 1.9E-64 587.8 48.8 697 5-881 179-910 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.4E-38 3E-43 341.4 18.7 275 15-292 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 5E-31 1.1E-35 331.5 24.4 489 362-942 92-589 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.4E-30 2.9E-35 327.6 24.8 486 361-937 116-607 (968)
6 KOG4194 Membrane glycoprotein 99.9 4.8E-22 1E-26 209.3 7.5 365 365-813 54-427 (873)
7 PLN03210 Resistant to P. syrin 99.9 1.2E-19 2.5E-24 228.0 29.6 345 359-764 554-909 (1153)
8 KOG4194 Membrane glycoprotein 99.8 3E-21 6.5E-26 203.4 4.9 322 360-726 99-427 (873)
9 KOG0618 Serine/threonine phosp 99.8 1.4E-21 3.1E-26 217.3 -3.5 453 364-911 22-489 (1081)
10 KOG0444 Cytoskeletal regulator 99.8 1.4E-21 3E-26 206.9 -4.6 159 687-880 220-378 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 8.5E-22 1.8E-26 198.6 -9.4 457 360-909 65-539 (565)
12 KOG0472 Leucine-rich repeat pr 99.8 7.9E-22 1.7E-26 198.8 -10.7 190 363-561 45-236 (565)
13 KOG0444 Cytoskeletal regulator 99.7 4.7E-20 1E-24 195.4 -3.4 151 687-872 243-394 (1255)
14 KOG0618 Serine/threonine phosp 99.7 1.2E-18 2.6E-23 194.3 -2.8 144 367-512 2-147 (1081)
15 PRK04841 transcriptional regul 99.5 3.1E-12 6.7E-17 160.8 24.6 297 3-339 7-333 (903)
16 KOG0617 Ras suppressor protein 99.4 3.7E-15 7.9E-20 133.2 -3.0 161 378-547 26-189 (264)
17 KOG0617 Ras suppressor protein 99.4 8.4E-15 1.8E-19 131.0 -3.3 160 352-514 22-185 (264)
18 PRK00411 cdc6 cell division co 99.3 3.9E-10 8.5E-15 126.7 26.8 289 8-318 28-357 (394)
19 PF01637 Arch_ATPase: Archaeal 99.3 3.8E-12 8.2E-17 132.4 8.6 194 12-208 1-234 (234)
20 COG2909 MalT ATP-dependent tra 99.3 2.7E-10 5.8E-15 128.3 22.1 298 4-340 13-340 (894)
21 PRK15387 E3 ubiquitin-protein 99.3 3.7E-11 8E-16 140.0 14.0 76 605-701 382-457 (788)
22 KOG4341 F-box protein containi 99.3 3.3E-14 7.1E-19 145.7 -10.0 302 605-939 138-441 (483)
23 KOG4658 Apoptotic ATPase [Sign 99.3 6.1E-12 1.3E-16 149.9 7.5 331 377-854 515-863 (889)
24 PRK15387 E3 ubiquitin-protein 99.2 4.9E-11 1.1E-15 139.1 14.1 254 366-727 204-457 (788)
25 TIGR02928 orc1/cdc6 family rep 99.2 2.6E-09 5.6E-14 118.8 26.7 292 8-318 13-349 (365)
26 KOG4341 F-box protein containi 99.2 2.2E-13 4.7E-18 139.7 -6.0 297 632-963 139-441 (483)
27 PRK15370 E3 ubiquitin-protein 99.2 6.1E-11 1.3E-15 139.3 12.8 138 364-514 179-316 (754)
28 TIGR03015 pepcterm_ATPase puta 99.2 2.2E-09 4.7E-14 113.9 22.5 178 31-212 43-242 (269)
29 PRK15370 E3 ubiquitin-protein 99.1 2E-10 4.3E-15 135.0 12.1 178 362-562 198-376 (754)
30 PF05729 NACHT: NACHT domain 99.1 4.2E-10 9.2E-15 109.8 12.6 143 32-179 1-164 (166)
31 COG2256 MGS1 ATPase related to 99.1 2.1E-09 4.6E-14 111.1 16.6 250 4-282 18-291 (436)
32 PRK00080 ruvB Holliday junctio 99.0 1.6E-09 3.5E-14 117.4 13.3 262 4-320 19-311 (328)
33 TIGR00635 ruvB Holliday juncti 99.0 7.2E-09 1.6E-13 111.9 18.0 277 9-324 3-294 (305)
34 KOG4237 Extracellular matrix p 99.0 5.7E-11 1.2E-15 121.1 0.7 122 386-508 68-194 (498)
35 COG3899 Predicted ATPase [Gene 98.9 4E-08 8.6E-13 118.3 19.8 307 11-339 1-387 (849)
36 PF14580 LRR_9: Leucine-rich r 98.9 1.9E-09 4.1E-14 102.7 5.5 128 379-509 13-147 (175)
37 KOG4237 Extracellular matrix p 98.9 1.5E-10 3.2E-15 118.2 -2.6 259 352-642 57-357 (498)
38 cd00116 LRR_RI Leucine-rich re 98.9 1.7E-09 3.6E-14 118.4 5.3 149 364-513 24-204 (319)
39 PRK13342 recombination factor 98.9 9.2E-08 2E-12 107.0 18.9 179 4-208 6-196 (413)
40 PF05496 RuvB_N: Holliday junc 98.8 2.9E-08 6.2E-13 96.2 12.1 176 4-208 18-221 (233)
41 COG3903 Predicted ATPase [Gene 98.8 6.6E-09 1.4E-13 108.5 7.6 290 31-340 14-316 (414)
42 PTZ00112 origin recognition co 98.8 1.2E-07 2.6E-12 108.2 17.5 203 8-212 753-986 (1164)
43 PF14580 LRR_9: Leucine-rich r 98.8 7.5E-09 1.6E-13 98.6 6.5 131 406-540 16-149 (175)
44 PTZ00202 tuzin; Provisional 98.8 6.2E-07 1.3E-11 94.9 20.7 165 4-178 256-434 (550)
45 PRK06893 DNA replication initi 98.8 8.9E-08 1.9E-12 97.7 13.4 176 5-208 11-203 (229)
46 PRK07003 DNA polymerase III su 98.7 5.8E-07 1.3E-11 102.5 20.3 184 5-210 11-223 (830)
47 PRK14961 DNA polymerase III su 98.7 3.4E-07 7.3E-12 100.5 18.2 193 5-205 11-217 (363)
48 COG1474 CDC6 Cdc6-related prot 98.7 1E-06 2.3E-11 95.2 21.4 171 8-179 15-204 (366)
49 PRK12402 replication factor C 98.7 2E-07 4.4E-12 102.6 16.2 201 5-206 10-224 (337)
50 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.1E-07 2.5E-12 97.7 13.2 174 8-209 13-202 (226)
51 PRK14949 DNA polymerase III su 98.7 1.5E-07 3.2E-12 109.4 15.1 185 5-207 11-219 (944)
52 PF14516 AAA_35: AAA-like doma 98.7 8.6E-06 1.9E-10 88.0 27.5 205 2-215 3-246 (331)
53 cd00116 LRR_RI Leucine-rich re 98.7 1.3E-08 2.9E-13 111.2 5.5 151 363-514 51-233 (319)
54 PRK14960 DNA polymerase III su 98.7 3.2E-07 7E-12 103.4 15.3 180 5-206 10-217 (702)
55 PF13401 AAA_22: AAA domain; P 98.7 9.2E-08 2E-12 88.8 9.2 115 31-147 4-125 (131)
56 KOG2028 ATPase related to the 98.7 3.1E-07 6.8E-12 93.1 13.2 176 4-201 132-329 (554)
57 PRK14962 DNA polymerase III su 98.6 6.2E-07 1.3E-11 100.5 16.7 190 5-212 9-223 (472)
58 KOG1259 Nischarin, modulator o 98.6 3.3E-09 7.2E-14 104.2 -1.3 124 362-487 283-409 (490)
59 PLN03025 replication factor C 98.6 3.5E-07 7.5E-12 98.8 14.0 188 5-208 8-201 (319)
60 PRK14956 DNA polymerase III su 98.6 4.9E-07 1.1E-11 99.2 14.8 192 5-204 13-218 (484)
61 PRK04195 replication factor C 98.6 1.9E-06 4.1E-11 98.6 20.0 183 5-210 9-205 (482)
62 PRK12323 DNA polymerase III su 98.6 5E-07 1.1E-11 101.6 14.7 197 5-206 11-223 (700)
63 PRK00440 rfc replication facto 98.6 1E-06 2.2E-11 96.2 17.1 184 5-206 12-201 (319)
64 KOG2227 Pre-initiation complex 98.6 3.6E-06 7.8E-11 89.1 19.8 211 3-213 143-373 (529)
65 KOG1259 Nischarin, modulator o 98.6 1.8E-08 4E-13 99.1 1.7 128 409-543 284-411 (490)
66 PRK14957 DNA polymerase III su 98.6 1.2E-06 2.6E-11 99.1 16.0 188 5-210 11-223 (546)
67 PRK07994 DNA polymerase III su 98.6 7.9E-07 1.7E-11 102.1 14.7 195 5-207 11-219 (647)
68 PRK05896 DNA polymerase III su 98.6 1E-06 2.2E-11 99.5 15.1 198 5-210 11-223 (605)
69 PRK14963 DNA polymerase III su 98.5 1.8E-06 4E-11 97.6 17.1 184 5-210 9-220 (504)
70 PRK14964 DNA polymerase III su 98.5 1.3E-06 2.9E-11 97.2 15.7 182 5-204 8-213 (491)
71 PRK06645 DNA polymerase III su 98.5 1.9E-06 4E-11 97.0 17.0 196 5-205 16-226 (507)
72 KOG0532 Leucine-rich repeat (L 98.5 3.1E-09 6.7E-14 113.8 -4.9 170 364-544 76-247 (722)
73 PF13173 AAA_14: AAA domain 98.5 1.7E-07 3.7E-12 86.1 7.2 119 32-170 3-127 (128)
74 PRK09112 DNA polymerase III su 98.5 2.1E-06 4.5E-11 92.6 16.4 199 3-207 16-239 (351)
75 cd00009 AAA The AAA+ (ATPases 98.5 7.8E-07 1.7E-11 84.8 11.9 123 13-149 1-131 (151)
76 PRK08084 DNA replication initi 98.5 1.2E-06 2.7E-11 89.7 13.8 171 10-208 22-209 (235)
77 PF13191 AAA_16: AAA ATPase do 98.5 2.8E-07 6.1E-12 91.6 8.5 73 11-85 1-81 (185)
78 PRK08727 hypothetical protein; 98.5 1.5E-06 3.2E-11 88.9 13.9 170 8-205 17-201 (233)
79 PRK14958 DNA polymerase III su 98.5 1.3E-06 2.7E-11 99.2 14.6 184 5-206 11-218 (509)
80 PRK14951 DNA polymerase III su 98.5 2.4E-06 5.2E-11 98.0 16.4 197 5-206 11-223 (618)
81 PRK08691 DNA polymerase III su 98.5 1.2E-06 2.6E-11 99.9 13.9 180 5-206 11-218 (709)
82 PRK07471 DNA polymerase III su 98.5 5.2E-06 1.1E-10 90.1 17.8 201 3-208 12-238 (365)
83 PRK07940 DNA polymerase III su 98.5 4.1E-06 8.8E-11 91.6 16.7 171 9-206 4-211 (394)
84 TIGR00678 holB DNA polymerase 98.5 4.9E-06 1.1E-10 82.5 15.7 161 21-204 3-187 (188)
85 TIGR02397 dnaX_nterm DNA polym 98.5 5.6E-06 1.2E-10 91.8 17.8 185 5-208 9-218 (355)
86 PRK05564 DNA polymerase III su 98.5 5.3E-06 1.2E-10 89.4 17.0 176 9-206 3-188 (313)
87 COG4886 Leucine-rich repeat (L 98.4 1.9E-07 4.2E-12 105.1 5.9 188 367-563 97-287 (394)
88 TIGR03345 VI_ClpV1 type VI sec 98.4 2.4E-06 5.3E-11 103.1 15.5 184 5-202 182-390 (852)
89 KOG0532 Leucine-rich repeat (L 98.4 9.8E-09 2.1E-13 110.0 -4.4 150 360-514 95-246 (722)
90 KOG3207 Beta-tubulin folding c 98.4 1.1E-07 2.3E-12 99.2 3.2 85 429-513 118-208 (505)
91 KOG0989 Replication factor C, 98.4 2E-06 4.4E-11 86.0 11.9 191 5-210 31-233 (346)
92 PRK09087 hypothetical protein; 98.4 2.4E-06 5.2E-11 86.5 12.8 163 9-208 20-195 (226)
93 PRK05642 DNA replication initi 98.4 3.9E-06 8.5E-11 85.8 14.4 149 32-208 46-208 (234)
94 PRK13341 recombination factor 98.4 2E-06 4.4E-11 101.1 13.9 174 5-204 23-213 (725)
95 PRK14959 DNA polymerase III su 98.4 3.4E-06 7.3E-11 96.0 15.0 200 5-212 11-225 (624)
96 TIGR02639 ClpA ATP-dependent C 98.4 3.1E-06 6.8E-11 101.7 15.5 159 6-178 178-358 (731)
97 PRK07133 DNA polymerase III su 98.4 5.6E-06 1.2E-10 95.7 16.6 194 5-209 13-221 (725)
98 PRK14955 DNA polymerase III su 98.4 3.1E-06 6.7E-11 94.1 14.2 200 5-205 11-225 (397)
99 PRK14969 DNA polymerase III su 98.4 4.4E-06 9.5E-11 95.6 15.7 187 5-209 11-222 (527)
100 PF00308 Bac_DnaA: Bacterial d 98.4 8.1E-06 1.8E-10 82.4 15.5 161 31-208 34-208 (219)
101 COG1223 Predicted ATPase (AAA+ 98.4 3.9E-06 8.5E-11 81.5 12.1 175 5-201 116-318 (368)
102 PRK14087 dnaA chromosomal repl 98.4 7.8E-06 1.7E-10 91.7 16.6 165 32-210 142-321 (450)
103 PRK08451 DNA polymerase III su 98.4 9.3E-06 2E-10 91.4 16.6 186 5-208 9-218 (535)
104 KOG3207 Beta-tubulin folding c 98.4 1.2E-07 2.5E-12 98.9 1.2 188 361-549 119-319 (505)
105 TIGR01242 26Sp45 26S proteasom 98.4 6.2E-06 1.4E-10 90.9 14.8 177 9-207 121-334 (364)
106 COG2255 RuvB Holliday junction 98.3 4.9E-06 1.1E-10 82.4 12.0 172 4-204 20-219 (332)
107 COG4886 Leucine-rich repeat (L 98.3 4.2E-07 9.1E-12 102.4 5.4 176 362-547 115-293 (394)
108 PRK14970 DNA polymerase III su 98.3 1.3E-05 2.8E-10 88.9 16.9 188 5-210 12-212 (367)
109 PRK09111 DNA polymerase III su 98.3 7.6E-06 1.7E-10 94.3 15.4 198 5-207 19-232 (598)
110 PF05621 TniB: Bacterial TniB 98.3 1.9E-05 4E-10 80.9 16.0 188 16-207 43-260 (302)
111 PRK08903 DnaA regulatory inact 98.3 6.1E-06 1.3E-10 84.7 12.8 173 8-212 16-203 (227)
112 TIGR02903 spore_lon_C ATP-depe 98.3 1.2E-05 2.6E-10 93.9 16.3 55 3-57 147-201 (615)
113 PRK14952 DNA polymerase III su 98.3 1.4E-05 3.1E-10 91.5 16.5 201 5-213 8-225 (584)
114 PRK14954 DNA polymerase III su 98.3 1.2E-05 2.6E-10 92.7 15.8 203 5-208 11-229 (620)
115 PRK03992 proteasome-activating 98.3 6.4E-06 1.4E-10 91.1 13.2 177 10-208 131-344 (389)
116 PRK06305 DNA polymerase III su 98.3 2E-05 4.4E-10 88.4 16.9 185 5-208 12-223 (451)
117 PRK14953 DNA polymerase III su 98.3 3E-05 6.6E-10 87.5 18.2 181 5-207 11-219 (486)
118 COG3267 ExeA Type II secretory 98.3 6.1E-05 1.3E-09 74.1 17.5 185 19-210 40-247 (269)
119 PRK15386 type III secretion pr 98.3 2E-06 4.3E-11 92.2 7.9 39 688-732 51-89 (426)
120 PF13855 LRR_8: Leucine rich r 98.3 9.3E-07 2E-11 68.9 4.0 59 385-443 1-60 (61)
121 CHL00095 clpC Clp protease ATP 98.2 8.3E-06 1.8E-10 99.3 14.0 179 9-200 178-379 (821)
122 PRK14950 DNA polymerase III su 98.2 2.5E-05 5.4E-10 91.2 17.4 196 5-207 11-220 (585)
123 PRK07764 DNA polymerase III su 98.2 2E-05 4.4E-10 94.0 16.3 186 5-212 10-226 (824)
124 COG1222 RPT1 ATP-dependent 26S 98.2 5E-05 1.1E-09 78.0 16.2 173 8-202 149-357 (406)
125 cd01128 rho_factor Transcripti 98.2 5.9E-06 1.3E-10 84.3 9.1 92 30-122 15-115 (249)
126 PHA02544 44 clamp loader, smal 98.2 1.6E-05 3.6E-10 86.3 13.1 149 5-176 16-171 (316)
127 PRK14948 DNA polymerase III su 98.2 5.2E-05 1.1E-09 88.2 17.7 196 5-206 11-220 (620)
128 PRK14971 DNA polymerase III su 98.2 4.6E-05 9.9E-10 88.7 17.3 185 5-208 12-223 (614)
129 PF10443 RNA12: RNA12 protein; 98.2 0.00013 2.9E-09 78.1 19.2 202 15-226 1-297 (431)
130 KOG2120 SCF ubiquitin ligase, 98.2 7E-08 1.5E-12 95.2 -5.0 67 745-815 207-273 (419)
131 PRK05563 DNA polymerase III su 98.2 5.3E-05 1.2E-09 87.5 17.6 192 5-204 11-216 (559)
132 PRK07399 DNA polymerase III su 98.2 0.00024 5.2E-09 75.7 21.1 195 9-207 3-220 (314)
133 TIGR03346 chaperone_ClpB ATP-d 98.2 3.6E-05 7.7E-10 94.1 16.6 159 6-178 169-349 (852)
134 TIGR02881 spore_V_K stage V sp 98.1 2E-05 4.3E-10 82.6 12.5 151 11-179 7-192 (261)
135 PRK06647 DNA polymerase III su 98.1 5.2E-05 1.1E-09 87.1 16.7 193 5-205 11-217 (563)
136 KOG2120 SCF ubiquitin ligase, 98.1 2.6E-07 5.6E-12 91.3 -1.8 41 687-728 311-351 (419)
137 PF13855 LRR_8: Leucine rich r 98.1 2.6E-06 5.7E-11 66.3 3.6 55 433-487 2-59 (61)
138 PLN03150 hypothetical protein; 98.1 7.9E-06 1.7E-10 96.3 9.3 102 411-513 420-526 (623)
139 PRK14965 DNA polymerase III su 98.1 4.5E-05 9.7E-10 88.6 15.2 198 5-210 11-223 (576)
140 PRK09376 rho transcription ter 98.1 1.1E-05 2.5E-10 85.5 9.2 91 31-122 169-268 (416)
141 PRK10865 protein disaggregatio 98.1 4.6E-05 9.9E-10 92.7 15.7 159 6-178 174-354 (857)
142 PRK11034 clpA ATP-dependent Cl 98.1 2.9E-05 6.2E-10 92.0 13.0 157 9-178 185-362 (758)
143 TIGR00362 DnaA chromosomal rep 98.1 9.4E-05 2E-09 83.1 16.5 159 32-207 137-309 (405)
144 PRK00149 dnaA chromosomal repl 98.0 6.1E-05 1.3E-09 85.6 14.7 159 31-206 148-320 (450)
145 TIGR03689 pup_AAA proteasome A 98.0 5.2E-05 1.1E-09 85.0 13.6 160 8-180 180-380 (512)
146 PLN03150 hypothetical protein; 98.0 1E-05 2.2E-10 95.4 8.1 79 434-513 420-501 (623)
147 PRK14088 dnaA chromosomal repl 98.0 9.3E-05 2E-09 83.1 15.3 161 31-207 130-304 (440)
148 PTZ00454 26S protease regulato 98.0 0.00012 2.7E-09 80.4 15.6 179 8-208 143-358 (398)
149 PTZ00361 26 proteosome regulat 98.0 4.9E-05 1.1E-09 84.0 11.5 172 8-201 181-388 (438)
150 PRK15386 type III secretion pr 98.0 1.5E-05 3.2E-10 85.7 7.0 138 745-935 49-188 (426)
151 KOG0731 AAA+-type ATPase conta 97.9 0.00018 3.8E-09 82.8 15.5 175 10-205 311-521 (774)
152 PRK06620 hypothetical protein; 97.9 6.4E-05 1.4E-09 75.5 10.8 157 9-205 16-186 (214)
153 TIGR00602 rad24 checkpoint pro 97.9 6.4E-05 1.4E-09 86.7 11.9 197 5-208 79-324 (637)
154 KOG0531 Protein phosphatase 1, 97.9 2.4E-06 5.2E-11 96.2 0.1 187 363-561 72-263 (414)
155 PRK14086 dnaA chromosomal repl 97.9 0.00015 3.3E-09 82.3 14.3 159 32-207 315-487 (617)
156 TIGR00767 rho transcription te 97.9 5.1E-05 1.1E-09 81.1 9.9 91 31-122 168-267 (415)
157 TIGR02880 cbbX_cfxQ probable R 97.9 0.00016 3.4E-09 76.3 13.3 132 33-180 60-210 (284)
158 CHL00176 ftsH cell division pr 97.9 0.00046 1E-08 80.4 18.0 178 8-207 181-394 (638)
159 TIGR01241 FtsH_fam ATP-depende 97.9 0.00024 5.1E-09 81.9 15.6 179 8-208 53-267 (495)
160 KOG2543 Origin recognition com 97.9 0.00038 8.3E-09 72.3 14.8 165 8-178 4-193 (438)
161 KOG0733 Nuclear AAA ATPase (VC 97.8 0.00028 6E-09 77.4 14.3 171 9-201 189-395 (802)
162 COG0542 clpA ATP-binding subun 97.8 0.00028 6.2E-09 81.8 15.4 158 8-178 168-346 (786)
163 CHL00181 cbbX CbbX; Provisiona 97.8 0.00042 9E-09 73.0 15.3 131 33-179 61-210 (287)
164 PRK11331 5-methylcytosine-spec 97.8 6.5E-05 1.4E-09 81.8 8.9 107 10-122 175-284 (459)
165 PRK12422 chromosomal replicati 97.8 0.00024 5.2E-09 79.5 13.8 152 31-201 141-306 (445)
166 PRK05707 DNA polymerase III su 97.8 0.00068 1.5E-08 72.7 16.5 165 31-207 22-202 (328)
167 PF00004 AAA: ATPase family as 97.8 9.2E-05 2E-09 68.7 8.8 69 34-122 1-70 (132)
168 CHL00195 ycf46 Ycf46; Provisio 97.8 0.00022 4.7E-09 80.3 13.0 173 9-201 227-428 (489)
169 PF05673 DUF815: Protein of un 97.8 0.00029 6.4E-09 69.9 12.2 52 7-58 24-79 (249)
170 KOG3665 ZYG-1-like serine/thre 97.8 1.2E-05 2.7E-10 94.2 3.0 111 403-513 142-261 (699)
171 KOG1859 Leucine-rich repeat pr 97.8 4.7E-07 1E-11 100.0 -8.3 126 410-543 165-291 (1096)
172 PF12799 LRR_4: Leucine Rich r 97.8 3.7E-05 8E-10 54.5 4.1 33 455-487 2-34 (44)
173 COG1373 Predicted ATPase (AAA+ 97.7 0.00036 7.9E-09 77.2 13.8 167 12-208 19-192 (398)
174 KOG0531 Protein phosphatase 1, 97.7 6.1E-06 1.3E-10 92.9 -0.1 175 359-547 91-271 (414)
175 COG2812 DnaX DNA polymerase II 97.7 0.00023 5.1E-09 79.2 11.8 191 5-203 11-215 (515)
176 smart00382 AAA ATPases associa 97.7 0.00016 3.4E-09 68.2 8.9 90 32-124 3-92 (148)
177 KOG3665 ZYG-1-like serine/thre 97.7 1.5E-05 3.2E-10 93.6 2.0 135 408-543 121-262 (699)
178 KOG0733 Nuclear AAA ATPase (VC 97.7 0.00037 8.1E-09 76.4 12.2 152 31-202 545-718 (802)
179 KOG1947 Leucine rich repeat pr 97.7 3.5E-06 7.7E-11 98.2 -3.4 247 660-939 187-442 (482)
180 PF12799 LRR_4: Leucine Rich r 97.7 6.3E-05 1.4E-09 53.4 4.0 40 432-471 1-41 (44)
181 KOG1909 Ran GTPase-activating 97.6 2.1E-05 4.6E-10 80.2 2.1 125 364-488 93-252 (382)
182 PRK08769 DNA polymerase III su 97.6 0.0013 2.8E-08 69.8 15.5 172 17-207 11-207 (319)
183 KOG1947 Leucine rich repeat pr 97.6 4.1E-06 8.9E-11 97.6 -3.6 254 603-914 186-443 (482)
184 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00068 1.5E-08 82.4 14.8 107 9-122 565-680 (852)
185 KOG0730 AAA+-type ATPase [Post 97.6 0.0011 2.5E-08 73.9 15.1 151 30-202 467-637 (693)
186 KOG0734 AAA+-type ATPase conta 97.6 0.00075 1.6E-08 72.9 12.7 151 9-179 303-485 (752)
187 PRK08058 DNA polymerase III su 97.6 0.0011 2.3E-08 71.8 14.2 161 10-177 5-181 (329)
188 TIGR01243 CDC48 AAA family ATP 97.5 0.0016 3.5E-08 79.0 16.5 178 9-208 452-664 (733)
189 KOG1514 Origin recognition com 97.5 0.003 6.6E-08 71.0 16.9 171 7-181 393-592 (767)
190 KOG1644 U2-associated snRNP A' 97.5 0.00026 5.5E-09 66.9 7.2 101 364-487 43-150 (233)
191 KOG0728 26S proteasome regulat 97.5 0.0029 6.2E-08 61.5 13.9 173 5-201 142-352 (404)
192 PRK08116 hypothetical protein; 97.5 0.00066 1.4E-08 70.8 10.5 102 32-148 115-221 (268)
193 COG0593 DnaA ATPase involved i 97.5 0.002 4.3E-08 69.7 14.0 133 30-179 112-258 (408)
194 PRK10536 hypothetical protein; 97.4 0.00074 1.6E-08 68.0 9.9 56 9-66 54-109 (262)
195 KOG0991 Replication factor C, 97.4 0.00019 4.2E-09 68.8 5.4 103 6-122 23-125 (333)
196 PF13177 DNA_pol3_delta2: DNA 97.4 0.0014 3E-08 62.7 11.4 136 14-166 1-162 (162)
197 COG0466 Lon ATP-dependent Lon 97.4 0.0011 2.4E-08 74.7 11.9 155 12-178 325-508 (782)
198 KOG1909 Ran GTPase-activating 97.4 5.4E-05 1.2E-09 77.4 1.5 160 382-543 89-282 (382)
199 TIGR02639 ClpA ATP-dependent C 97.4 0.0016 3.4E-08 78.8 14.1 104 9-122 453-565 (731)
200 KOG2982 Uncharacterized conser 97.4 7.7E-05 1.7E-09 74.3 2.4 104 364-467 46-159 (418)
201 PRK06871 DNA polymerase III su 97.4 0.0064 1.4E-07 64.7 17.0 171 20-203 12-198 (325)
202 TIGR01243 CDC48 AAA family ATP 97.4 0.0018 3.9E-08 78.5 14.5 173 9-203 177-382 (733)
203 PRK08181 transposase; Validate 97.4 0.00055 1.2E-08 70.8 8.3 105 24-148 101-209 (269)
204 PRK10865 protein disaggregatio 97.4 0.0031 6.7E-08 77.1 15.9 107 9-122 567-682 (857)
205 KOG0739 AAA+-type ATPase [Post 97.3 0.0042 9E-08 62.2 13.4 170 11-202 134-335 (439)
206 KOG2035 Replication factor C, 97.3 0.0062 1.3E-07 60.6 14.4 213 6-231 9-261 (351)
207 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0049 1.1E-07 64.4 14.9 57 16-79 8-64 (262)
208 TIGR03346 chaperone_ClpB ATP-d 97.3 0.0017 3.6E-08 79.7 13.0 107 9-122 564-679 (852)
209 KOG1644 U2-associated snRNP A' 97.3 0.00036 7.7E-09 65.9 5.4 102 410-512 43-150 (233)
210 KOG1859 Leucine-rich repeat pr 97.3 7.6E-06 1.7E-10 90.8 -6.6 125 361-488 162-290 (1096)
211 TIGR02902 spore_lonB ATP-depen 97.3 0.00095 2.1E-08 76.9 9.6 52 5-56 60-111 (531)
212 PRK06090 DNA polymerase III su 97.2 0.014 3E-07 62.1 17.2 172 19-208 12-201 (319)
213 KOG0735 AAA+-type ATPase [Post 97.2 0.0041 9E-08 69.8 13.5 160 32-210 432-618 (952)
214 KOG2982 Uncharacterized conser 97.2 0.00013 2.7E-09 72.8 1.5 104 433-542 46-157 (418)
215 PRK12608 transcription termina 97.2 0.0026 5.7E-08 67.9 11.4 102 20-122 121-232 (380)
216 PRK11034 clpA ATP-dependent Cl 97.2 0.0023 4.9E-08 76.3 11.8 104 9-122 457-569 (758)
217 PF01695 IstB_IS21: IstB-like 97.2 0.00045 9.7E-09 67.1 4.9 74 31-122 47-120 (178)
218 KOG2004 Mitochondrial ATP-depe 97.2 0.0026 5.5E-08 71.5 11.1 157 10-178 411-596 (906)
219 PRK06964 DNA polymerase III su 97.2 0.017 3.8E-07 62.0 17.2 100 98-206 116-223 (342)
220 PRK07993 DNA polymerase III su 97.2 0.0098 2.1E-07 64.1 15.4 173 19-204 11-200 (334)
221 KOG0735 AAA+-type ATPase [Post 97.1 0.014 3.1E-07 65.7 16.4 151 32-204 702-872 (952)
222 KOG0741 AAA+-type ATPase [Post 97.1 0.021 4.5E-07 62.1 17.0 127 30-178 537-686 (744)
223 PRK08939 primosomal protein Dn 97.1 0.0017 3.7E-08 68.9 9.0 117 14-148 135-261 (306)
224 TIGR00763 lon ATP-dependent pr 97.1 0.0035 7.6E-08 76.2 12.8 47 10-56 320-372 (775)
225 KOG0736 Peroxisome assembly fa 97.1 0.013 2.9E-07 66.6 15.7 166 10-199 672-876 (953)
226 COG0470 HolB ATPase involved i 97.1 0.0059 1.3E-07 66.8 13.2 143 11-169 2-172 (325)
227 PLN00020 ribulose bisphosphate 97.1 0.013 2.7E-07 62.0 14.5 148 30-203 147-333 (413)
228 PF02562 PhoH: PhoH-like prote 97.1 0.0017 3.6E-08 63.7 7.6 50 17-68 7-56 (205)
229 PRK12377 putative replication 97.1 0.0035 7.6E-08 64.1 10.3 91 14-121 82-174 (248)
230 KOG2228 Origin recognition com 97.1 0.009 1.9E-07 61.3 12.8 168 8-178 22-219 (408)
231 PF07693 KAP_NTPase: KAP famil 97.1 0.029 6.2E-07 61.3 18.3 44 15-58 1-47 (325)
232 CHL00095 clpC Clp protease ATP 97.0 0.003 6.4E-08 77.3 11.1 107 9-122 508-623 (821)
233 PRK08118 topology modulation p 97.0 0.00044 9.6E-09 66.5 3.1 35 32-66 2-37 (167)
234 PF00448 SRP54: SRP54-type pro 97.0 0.0035 7.5E-08 61.9 9.4 87 31-119 1-92 (196)
235 PRK06526 transposase; Provisio 97.0 0.00084 1.8E-08 69.1 5.1 73 32-122 99-171 (254)
236 PRK09183 transposase/IS protei 97.0 0.0018 4E-08 67.2 7.6 35 32-68 103-137 (259)
237 PRK06921 hypothetical protein; 97.0 0.0021 4.6E-08 66.8 8.0 38 31-69 117-154 (266)
238 KOG2123 Uncharacterized conser 97.0 4.4E-05 9.6E-10 75.2 -4.2 81 430-512 17-98 (388)
239 PRK10787 DNA-binding ATP-depen 97.0 0.0053 1.1E-07 73.9 12.0 158 9-178 321-506 (784)
240 KOG0744 AAA+-type ATPase [Post 96.9 0.0051 1.1E-07 62.5 9.7 27 32-58 178-204 (423)
241 PRK04132 replication factor C 96.9 0.015 3.3E-07 69.4 15.4 157 36-208 569-732 (846)
242 PRK04296 thymidine kinase; Pro 96.9 0.0013 2.8E-08 65.0 5.5 111 32-150 3-118 (190)
243 PRK07261 topology modulation p 96.9 0.0037 8E-08 60.5 8.6 34 33-66 2-36 (171)
244 TIGR02237 recomb_radB DNA repa 96.9 0.0043 9.4E-08 62.7 9.5 47 31-80 12-58 (209)
245 PTZ00494 tuzin-like protein; P 96.9 0.081 1.8E-06 56.8 18.5 164 5-178 366-544 (664)
246 PF04665 Pox_A32: Poxvirus A32 96.9 0.0019 4.2E-08 64.8 6.5 35 33-69 15-49 (241)
247 COG0542 clpA ATP-binding subun 96.9 0.0038 8.2E-08 72.8 9.5 106 9-122 490-605 (786)
248 COG0464 SpoVK ATPases of the A 96.9 0.011 2.3E-07 68.6 13.5 151 30-200 275-445 (494)
249 PRK07952 DNA replication prote 96.8 0.0094 2E-07 60.8 11.1 92 15-122 81-174 (244)
250 PRK14722 flhF flagellar biosyn 96.8 0.0056 1.2E-07 66.1 9.8 89 31-121 137-226 (374)
251 PHA00729 NTP-binding motif con 96.8 0.0063 1.4E-07 60.4 9.2 35 22-56 8-42 (226)
252 TIGR02012 tigrfam_recA protein 96.8 0.0058 1.2E-07 64.7 9.4 84 31-121 55-144 (321)
253 COG1484 DnaC DNA replication p 96.8 0.0046 9.9E-08 63.8 8.3 92 14-122 87-179 (254)
254 PRK06835 DNA replication prote 96.8 0.0054 1.2E-07 65.7 9.0 101 32-148 184-289 (329)
255 PRK11889 flhF flagellar biosyn 96.7 0.015 3.2E-07 62.4 11.9 89 31-121 241-331 (436)
256 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0083 1.8E-07 61.9 10.1 56 31-87 19-78 (235)
257 PRK10733 hflB ATP-dependent me 96.7 0.016 3.4E-07 68.8 13.5 169 11-201 153-356 (644)
258 KOG0652 26S proteasome regulat 96.7 0.053 1.1E-06 53.4 14.4 152 8-179 169-356 (424)
259 PRK06696 uridine kinase; Valid 96.7 0.0055 1.2E-07 62.4 8.4 44 14-57 2-48 (223)
260 cd01393 recA_like RecA is a b 96.7 0.016 3.6E-07 59.3 11.6 49 31-79 19-71 (226)
261 TIGR03499 FlhF flagellar biosy 96.7 0.017 3.7E-07 60.9 11.9 87 31-119 194-281 (282)
262 COG2884 FtsE Predicted ATPase 96.7 0.0079 1.7E-07 56.6 8.0 27 30-56 27-53 (223)
263 PRK12727 flagellar biosynthesi 96.7 0.014 3E-07 65.3 11.4 106 13-120 326-438 (559)
264 cd00983 recA RecA is a bacter 96.7 0.0079 1.7E-07 63.7 9.2 83 31-120 55-143 (325)
265 KOG0743 AAA+-type ATPase [Post 96.6 0.081 1.8E-06 57.2 16.5 152 32-215 236-417 (457)
266 PRK12723 flagellar biosynthesi 96.6 0.013 2.8E-07 64.0 11.0 89 31-121 174-265 (388)
267 PRK08699 DNA polymerase III su 96.6 0.046 9.9E-07 58.7 14.9 156 29-204 19-202 (325)
268 KOG1969 DNA replication checkp 96.6 0.0045 9.7E-08 69.9 7.3 76 28-122 323-399 (877)
269 PF08423 Rad51: Rad51; InterP 96.6 0.019 4.2E-07 59.4 11.6 58 31-89 38-99 (256)
270 PF03215 Rad17: Rad17 cell cyc 96.6 0.0073 1.6E-07 68.7 9.1 59 6-68 15-78 (519)
271 PRK09354 recA recombinase A; P 96.6 0.0097 2.1E-07 63.5 9.4 84 31-121 60-149 (349)
272 PF13207 AAA_17: AAA domain; P 96.6 0.0019 4.2E-08 58.6 3.7 24 33-56 1-24 (121)
273 KOG2739 Leucine-rich acidic nu 96.6 0.0011 2.3E-08 65.8 2.1 88 425-514 36-128 (260)
274 CHL00206 ycf2 Ycf2; Provisiona 96.6 0.018 3.8E-07 72.8 12.7 27 30-56 1629-1655(2281)
275 PRK09361 radB DNA repair and r 96.6 0.014 3.1E-07 59.7 10.3 45 31-78 23-67 (225)
276 KOG0729 26S proteasome regulat 96.6 0.016 3.4E-07 57.1 9.7 94 9-122 176-282 (435)
277 smart00763 AAA_PrkA PrkA AAA d 96.5 0.004 8.7E-08 66.3 6.1 47 11-57 52-104 (361)
278 KOG4579 Leucine-rich repeat (L 96.5 0.0003 6.5E-09 61.9 -1.9 100 365-486 29-132 (177)
279 COG0465 HflB ATP-dependent Zn 96.5 0.015 3.2E-07 66.1 10.8 174 8-203 148-356 (596)
280 PRK07132 DNA polymerase III su 96.5 0.077 1.7E-06 56.0 15.6 166 19-207 5-184 (299)
281 TIGR02238 recomb_DMC1 meiotic 96.5 0.018 4E-07 61.3 10.8 58 31-89 96-157 (313)
282 PLN03187 meiotic recombination 96.5 0.019 4.2E-07 61.6 11.0 58 31-89 126-187 (344)
283 PF10236 DAP3: Mitochondrial r 96.5 0.12 2.6E-06 55.3 16.9 47 159-205 258-306 (309)
284 KOG0727 26S proteasome regulat 96.5 0.058 1.3E-06 52.9 12.8 132 29-180 187-341 (408)
285 cd00561 CobA_CobO_BtuR ATP:cor 96.4 0.018 3.8E-07 54.1 9.1 114 32-148 3-138 (159)
286 KOG4579 Leucine-rich repeat (L 96.4 0.00039 8.5E-09 61.2 -1.7 85 427-513 48-134 (177)
287 PRK14974 cell division protein 96.4 0.029 6.3E-07 60.1 11.7 90 31-122 140-234 (336)
288 cd01394 radB RadB. The archaea 96.4 0.022 4.7E-07 58.0 10.4 41 31-73 19-59 (218)
289 KOG1051 Chaperone HSP104 and r 96.4 0.018 3.8E-07 68.4 10.5 103 10-122 562-672 (898)
290 cd01120 RecA-like_NTPases RecA 96.4 0.021 4.6E-07 54.9 9.8 38 34-73 2-39 (165)
291 PRK05703 flhF flagellar biosyn 96.3 0.03 6.5E-07 62.5 11.8 87 31-119 221-308 (424)
292 KOG2170 ATPase of the AAA+ sup 96.3 0.067 1.4E-06 54.4 12.8 133 30-178 109-264 (344)
293 COG1875 NYN ribonuclease and A 96.3 0.014 3E-07 60.7 8.2 134 12-148 226-388 (436)
294 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.036 7.8E-07 57.0 11.5 52 31-87 21-72 (237)
295 COG1066 Sms Predicted ATP-depe 96.3 0.025 5.5E-07 60.0 10.1 86 31-122 93-180 (456)
296 PRK09270 nucleoside triphospha 96.3 0.024 5.3E-07 58.0 10.1 30 29-58 31-60 (229)
297 KOG2739 Leucine-rich acidic nu 96.3 0.002 4.4E-08 63.8 2.0 61 407-467 63-129 (260)
298 PRK05541 adenylylsulfate kinas 96.3 0.012 2.5E-07 57.6 7.3 35 31-67 7-41 (176)
299 PRK12726 flagellar biosynthesi 96.3 0.027 6E-07 60.2 10.3 90 30-121 205-296 (407)
300 PF06309 Torsin: Torsin; Inte 96.2 0.039 8.5E-07 48.9 9.5 45 11-55 26-77 (127)
301 COG1224 TIP49 DNA helicase TIP 96.2 0.018 4E-07 59.5 8.5 83 8-90 37-126 (450)
302 PRK13765 ATP-dependent proteas 96.2 0.007 1.5E-07 70.4 6.4 82 4-89 25-106 (637)
303 TIGR00554 panK_bact pantothena 96.2 0.025 5.4E-07 59.2 9.8 44 29-72 60-103 (290)
304 COG1419 FlhF Flagellar GTP-bin 96.2 0.045 9.7E-07 58.8 11.8 88 31-120 203-291 (407)
305 cd01121 Sms Sms (bacterial rad 96.2 0.026 5.6E-07 61.7 10.2 86 31-121 82-169 (372)
306 PRK08533 flagellar accessory p 96.2 0.03 6.5E-07 57.1 10.0 53 31-88 24-76 (230)
307 PF14532 Sigma54_activ_2: Sigm 96.2 0.0021 4.5E-08 59.9 1.4 44 13-56 1-46 (138)
308 COG2607 Predicted ATPase (AAA+ 96.1 0.06 1.3E-06 52.8 11.0 113 9-147 59-182 (287)
309 TIGR02858 spore_III_AA stage I 96.1 0.024 5.2E-07 58.8 9.1 113 28-150 108-231 (270)
310 PTZ00035 Rad51 protein; Provis 96.1 0.045 9.8E-07 59.1 11.5 58 31-89 118-179 (337)
311 TIGR00064 ftsY signal recognit 96.1 0.032 6.9E-07 58.3 9.7 89 30-120 71-164 (272)
312 PRK13531 regulatory ATPase Rav 96.1 0.008 1.7E-07 66.5 5.3 47 8-56 18-64 (498)
313 cd03115 SRP The signal recogni 96.0 0.029 6.3E-07 54.6 8.8 54 33-88 2-56 (173)
314 PF01583 APS_kinase: Adenylyls 96.0 0.0089 1.9E-07 55.8 4.8 35 32-68 3-37 (156)
315 COG0468 RecA RecA/RadA recombi 96.0 0.044 9.6E-07 56.6 10.2 88 31-120 60-151 (279)
316 KOG0742 AAA+-type ATPase [Post 96.0 0.039 8.6E-07 58.0 9.6 128 30-178 383-528 (630)
317 KOG0738 AAA+-type ATPase [Post 96.0 0.028 6E-07 58.9 8.4 26 31-56 245-270 (491)
318 PRK00771 signal recognition pa 96.0 0.047 1E-06 60.8 11.0 86 30-119 94-184 (437)
319 COG5238 RNA1 Ran GTPase-activa 96.0 0.0034 7.4E-08 62.1 1.8 36 383-418 28-67 (388)
320 PF00154 RecA: recA bacterial 96.0 0.053 1.1E-06 57.3 10.7 87 31-124 53-145 (322)
321 PRK06067 flagellar accessory p 96.0 0.039 8.5E-07 56.8 9.8 52 31-87 25-76 (234)
322 PRK15455 PrkA family serine pr 96.0 0.0089 1.9E-07 67.0 5.2 51 6-56 72-128 (644)
323 COG1618 Predicted nucleotide k 96.0 0.01 2.2E-07 54.2 4.7 31 32-63 6-36 (179)
324 COG1102 Cmk Cytidylate kinase 96.0 0.0081 1.7E-07 54.9 4.0 46 33-91 2-47 (179)
325 PRK06547 hypothetical protein; 96.0 0.012 2.5E-07 56.8 5.4 36 21-56 5-40 (172)
326 PRK14721 flhF flagellar biosyn 96.0 0.046 1E-06 60.2 10.7 87 31-119 191-278 (420)
327 PF13306 LRR_5: Leucine rich r 95.9 0.026 5.6E-07 51.8 7.5 116 382-503 9-127 (129)
328 PRK14723 flhF flagellar biosyn 95.9 0.054 1.2E-06 63.8 11.7 88 31-120 185-273 (767)
329 PRK05342 clpX ATP-dependent pr 95.9 0.016 3.6E-07 64.0 7.1 48 9-56 70-133 (412)
330 PRK05439 pantothenate kinase; 95.9 0.078 1.7E-06 56.0 11.7 44 29-72 84-127 (311)
331 PRK12724 flagellar biosynthesi 95.9 0.029 6.2E-07 61.2 8.6 85 31-119 223-308 (432)
332 TIGR02236 recomb_radA DNA repa 95.9 0.052 1.1E-06 58.6 10.7 58 31-89 95-156 (310)
333 COG0194 Gmk Guanylate kinase [ 95.9 0.032 6.9E-07 52.9 7.6 25 31-55 4-28 (191)
334 PRK10867 signal recognition pa 95.9 0.082 1.8E-06 58.7 12.2 58 31-89 100-158 (433)
335 cd03238 ABC_UvrA The excision 95.9 0.029 6.3E-07 54.3 7.7 119 31-162 21-161 (176)
336 PRK11608 pspF phage shock prot 95.9 0.016 3.4E-07 62.7 6.5 62 9-72 5-68 (326)
337 cd02025 PanK Pantothenate kina 95.9 0.039 8.5E-07 55.8 9.0 40 33-72 1-40 (220)
338 PRK06995 flhF flagellar biosyn 95.8 0.042 9.1E-07 61.6 9.9 88 31-120 256-344 (484)
339 PLN03186 DNA repair protein RA 95.8 0.057 1.2E-06 58.1 10.5 58 31-89 123-184 (342)
340 cd03223 ABCD_peroxisomal_ALDP 95.8 0.039 8.4E-07 53.2 8.4 115 31-151 27-151 (166)
341 cd01124 KaiC KaiC is a circadi 95.8 0.025 5.5E-07 55.9 7.4 44 34-81 2-45 (187)
342 TIGR02239 recomb_RAD51 DNA rep 95.8 0.043 9.3E-07 58.7 9.5 58 31-89 96-157 (316)
343 COG5238 RNA1 Ran GTPase-activa 95.8 0.0049 1.1E-07 61.0 2.0 39 603-641 212-252 (388)
344 PRK04328 hypothetical protein; 95.8 0.06 1.3E-06 55.8 10.2 53 31-88 23-75 (249)
345 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.027 5.8E-07 55.5 7.2 24 33-56 1-24 (183)
346 PF03308 ArgK: ArgK protein; 95.7 0.014 3.1E-07 58.4 5.1 53 29-81 27-79 (266)
347 cd03247 ABCC_cytochrome_bd The 95.7 0.037 8E-07 54.1 8.1 26 31-56 28-53 (178)
348 PRK04301 radA DNA repair and r 95.7 0.061 1.3E-06 58.1 10.4 57 31-88 102-162 (317)
349 KOG0726 26S proteasome regulat 95.7 0.13 2.7E-06 51.8 11.4 151 8-179 183-370 (440)
350 PF07724 AAA_2: AAA domain (Cd 95.7 0.011 2.4E-07 56.9 4.2 43 31-74 3-45 (171)
351 PRK11823 DNA repair protein Ra 95.7 0.048 1E-06 61.5 9.9 85 31-120 80-166 (446)
352 PF07728 AAA_5: AAA domain (dy 95.7 0.025 5.4E-07 52.8 6.5 43 34-81 2-44 (139)
353 PRK10463 hydrogenase nickel in 95.7 0.12 2.6E-06 53.7 11.7 94 22-121 95-195 (290)
354 cd01133 F1-ATPase_beta F1 ATP 95.7 0.042 9E-07 56.6 8.3 90 31-122 69-175 (274)
355 COG0529 CysC Adenylylsulfate k 95.7 0.054 1.2E-06 50.6 8.0 31 27-57 19-49 (197)
356 PRK00889 adenylylsulfate kinas 95.6 0.041 8.8E-07 53.7 8.0 26 31-56 4-29 (175)
357 TIGR01817 nifA Nif-specific re 95.6 0.031 6.7E-07 65.3 8.4 63 8-72 194-258 (534)
358 COG4608 AppF ABC-type oligopep 95.6 0.046 1E-06 55.3 8.3 118 31-153 39-175 (268)
359 TIGR00959 ffh signal recogniti 95.6 0.11 2.3E-06 57.8 12.1 58 31-89 99-157 (428)
360 KOG2123 Uncharacterized conser 95.6 0.00089 1.9E-08 66.3 -3.7 80 429-508 38-123 (388)
361 COG3854 SpoIIIAA ncharacterize 95.6 0.039 8.4E-07 53.6 7.1 123 22-151 128-256 (308)
362 PF13238 AAA_18: AAA domain; P 95.5 0.011 2.5E-07 54.2 3.5 22 34-55 1-22 (129)
363 COG0563 Adk Adenylate kinase a 95.5 0.029 6.2E-07 54.3 6.2 24 33-56 2-25 (178)
364 PRK15429 formate hydrogenlyase 95.5 0.035 7.5E-07 67.0 8.3 63 8-72 374-438 (686)
365 PF12775 AAA_7: P-loop contain 95.5 0.012 2.7E-07 61.4 3.9 87 22-121 25-111 (272)
366 TIGR00416 sms DNA repair prote 95.5 0.06 1.3E-06 60.7 9.6 86 31-121 94-181 (454)
367 PF00560 LRR_1: Leucine Rich R 95.5 0.0065 1.4E-07 35.7 1.0 22 455-476 1-22 (22)
368 COG4088 Predicted nucleotide k 95.5 0.034 7.3E-07 53.0 6.2 26 32-57 2-27 (261)
369 PF13245 AAA_19: Part of AAA d 95.5 0.037 8.1E-07 44.8 5.7 38 32-69 11-50 (76)
370 cd01131 PilT Pilus retraction 95.5 0.025 5.5E-07 56.3 5.8 109 32-150 2-111 (198)
371 COG1703 ArgK Putative periplas 95.4 0.027 5.9E-07 57.3 5.9 54 29-82 49-102 (323)
372 PRK07667 uridine kinase; Provi 95.4 0.037 8E-07 54.8 6.9 29 29-57 15-43 (193)
373 cd02019 NK Nucleoside/nucleoti 95.4 0.013 2.9E-07 46.6 3.0 23 33-55 1-23 (69)
374 PF00485 PRK: Phosphoribulokin 95.4 0.015 3.2E-07 57.9 4.0 25 33-57 1-25 (194)
375 TIGR01425 SRP54_euk signal rec 95.4 0.077 1.7E-06 58.5 9.8 38 31-70 100-137 (429)
376 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.08 1.7E-06 55.2 9.6 39 31-71 36-74 (259)
377 cd02027 APSK Adenosine 5'-phos 95.4 0.1 2.2E-06 49.1 9.5 24 33-56 1-24 (149)
378 TIGR02655 circ_KaiC circadian 95.4 0.1 2.2E-06 60.0 11.2 64 21-89 251-316 (484)
379 COG0572 Udk Uridine kinase [Nu 95.4 0.039 8.4E-07 54.2 6.6 28 30-57 7-34 (218)
380 PRK10416 signal recognition pa 95.4 0.17 3.7E-06 54.1 12.1 39 30-70 113-151 (318)
381 cd01125 repA Hexameric Replica 95.4 0.094 2E-06 54.1 10.0 141 33-173 3-199 (239)
382 COG4619 ABC-type uncharacteriz 95.4 0.2 4.4E-06 46.3 10.6 26 31-56 29-54 (223)
383 PF00910 RNA_helicase: RNA hel 95.4 0.012 2.6E-07 51.8 2.9 24 34-57 1-24 (107)
384 KOG0740 AAA+-type ATPase [Post 95.4 0.28 6.1E-06 53.5 13.6 72 30-121 185-256 (428)
385 PRK08233 hypothetical protein; 95.4 0.058 1.2E-06 53.1 8.0 26 31-56 3-28 (182)
386 KOG1970 Checkpoint RAD17-RFC c 95.3 0.088 1.9E-06 58.0 9.7 43 14-56 86-135 (634)
387 KOG0924 mRNA splicing factor A 95.3 0.051 1.1E-06 60.8 8.0 128 11-147 357-509 (1042)
388 TIGR00390 hslU ATP-dependent p 95.3 0.042 9E-07 59.7 7.2 48 9-56 11-72 (441)
389 TIGR00382 clpX endopeptidase C 95.3 0.06 1.3E-06 59.3 8.4 48 9-56 76-141 (413)
390 TIGR00150 HI0065_YjeE ATPase, 95.3 0.031 6.6E-07 50.7 5.1 27 31-57 22-48 (133)
391 PRK09519 recA DNA recombinatio 95.3 0.082 1.8E-06 62.6 9.9 84 31-121 60-149 (790)
392 KOG0737 AAA+-type ATPase [Post 95.2 0.14 3.1E-06 53.8 10.4 26 31-56 127-152 (386)
393 TIGR02974 phageshock_pspF psp 95.2 0.035 7.6E-07 60.0 6.4 58 12-71 1-60 (329)
394 COG4240 Predicted kinase [Gene 95.2 0.13 2.9E-06 49.9 9.4 83 29-112 48-135 (300)
395 PF06068 TIP49: TIP49 C-termin 95.2 0.031 6.7E-07 59.0 5.7 53 9-61 23-80 (398)
396 PF13481 AAA_25: AAA domain; P 95.2 0.078 1.7E-06 52.7 8.5 41 32-72 33-81 (193)
397 COG1121 ZnuC ABC-type Mn/Zn tr 95.2 0.067 1.5E-06 54.1 7.8 23 32-54 31-53 (254)
398 cd03281 ABC_MSH5_euk MutS5 hom 95.2 0.026 5.7E-07 56.7 4.9 24 31-54 29-52 (213)
399 PF05970 PIF1: PIF1-like helic 95.2 0.039 8.4E-07 60.8 6.7 42 16-57 7-48 (364)
400 cd03246 ABCC_Protease_Secretio 95.1 0.055 1.2E-06 52.6 7.0 26 31-56 28-53 (173)
401 cd03216 ABC_Carb_Monos_I This 95.1 0.037 8.1E-07 53.1 5.7 114 31-151 26-145 (163)
402 cd00544 CobU Adenosylcobinamid 95.1 0.083 1.8E-06 50.7 7.9 80 34-119 2-82 (169)
403 PRK05917 DNA polymerase III su 95.1 0.51 1.1E-05 49.3 14.1 37 20-56 7-44 (290)
404 PRK05022 anaerobic nitric oxid 95.1 0.046 1E-06 63.2 7.3 64 8-73 185-250 (509)
405 cd03228 ABCC_MRP_Like The MRP 95.1 0.087 1.9E-06 51.1 8.2 26 31-56 28-53 (171)
406 COG0467 RAD55 RecA-superfamily 95.1 0.16 3.5E-06 53.2 10.8 54 30-88 22-75 (260)
407 PTZ00301 uridine kinase; Provi 95.1 0.036 7.7E-07 55.3 5.4 26 31-56 3-28 (210)
408 cd03222 ABC_RNaseL_inhibitor T 95.0 0.093 2E-06 50.8 8.1 26 31-56 25-50 (177)
409 PF00158 Sigma54_activat: Sigm 95.0 0.072 1.6E-06 51.1 7.3 58 12-72 1-61 (168)
410 TIGR03881 KaiC_arch_4 KaiC dom 95.0 0.21 4.5E-06 51.3 11.3 53 31-88 20-72 (229)
411 cd03283 ABC_MutS-like MutS-lik 95.0 0.13 2.7E-06 51.2 9.2 24 32-55 26-49 (199)
412 cd01122 GP4d_helicase GP4d_hel 95.0 0.16 3.4E-06 53.7 10.5 51 31-84 30-80 (271)
413 TIGR00764 lon_rel lon-related 95.0 0.062 1.3E-06 63.0 7.9 77 8-88 16-92 (608)
414 TIGR00708 cobA cob(I)alamin ad 95.0 0.22 4.8E-06 47.4 10.1 115 32-148 6-140 (173)
415 KOG0730 AAA+-type ATPase [Post 95.0 0.86 1.9E-05 51.9 16.1 170 11-202 185-386 (693)
416 cd00046 DEXDc DEAD-like helica 95.0 0.058 1.3E-06 50.1 6.5 37 33-69 2-38 (144)
417 cd03214 ABC_Iron-Siderophores_ 94.9 0.11 2.5E-06 50.8 8.6 116 31-151 25-161 (180)
418 PF13306 LRR_5: Leucine rich r 94.9 0.083 1.8E-06 48.4 7.3 107 400-511 3-112 (129)
419 PF13671 AAA_33: AAA domain; P 94.9 0.023 5.1E-07 53.2 3.6 24 33-56 1-24 (143)
420 PRK05973 replicative DNA helic 94.9 0.12 2.5E-06 52.4 8.6 47 31-81 64-110 (237)
421 PRK05480 uridine/cytidine kina 94.9 0.027 5.9E-07 56.8 4.2 26 30-55 5-30 (209)
422 PF06745 KaiC: KaiC; InterPro 94.9 0.066 1.4E-06 54.8 7.0 48 31-81 19-66 (226)
423 COG1643 HrpA HrpA-like helicas 94.8 0.096 2.1E-06 62.6 9.0 125 19-147 55-204 (845)
424 PF07726 AAA_3: ATPase family 94.8 0.019 4E-07 51.1 2.4 29 34-64 2-30 (131)
425 KOG3347 Predicted nucleotide k 94.8 0.048 1E-06 49.1 4.9 68 32-108 8-75 (176)
426 PRK06762 hypothetical protein; 94.8 0.028 6E-07 54.4 3.8 25 31-55 2-26 (166)
427 PRK13768 GTPase; Provisional 94.8 0.13 2.9E-06 53.3 9.0 36 32-69 3-38 (253)
428 TIGR00235 udk uridine kinase. 94.8 0.029 6.3E-07 56.4 4.1 27 30-56 5-31 (207)
429 PRK07276 DNA polymerase III su 94.8 1.1 2.3E-05 47.1 15.6 139 15-176 7-173 (290)
430 cd02029 PRK_like Phosphoribulo 94.8 0.12 2.6E-06 52.7 8.2 25 33-57 1-25 (277)
431 PRK06731 flhF flagellar biosyn 94.8 0.16 3.5E-06 52.6 9.5 89 31-121 75-165 (270)
432 PF03205 MobB: Molybdopterin g 94.8 0.051 1.1E-06 50.3 5.3 39 32-71 1-39 (140)
433 cd00267 ABC_ATPase ABC (ATP-bi 94.7 0.089 1.9E-06 50.2 7.1 115 31-153 25-145 (157)
434 PRK05201 hslU ATP-dependent pr 94.7 0.083 1.8E-06 57.5 7.4 78 9-86 14-107 (443)
435 KOG3864 Uncharacterized conser 94.7 0.0024 5.2E-08 60.6 -3.6 91 838-939 101-191 (221)
436 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.071 1.5E-06 49.9 6.1 26 31-56 26-51 (144)
437 cd03230 ABC_DR_subfamily_A Thi 94.7 0.11 2.3E-06 50.6 7.6 25 31-55 26-50 (173)
438 TIGR01069 mutS2 MutS2 family p 94.7 0.12 2.6E-06 62.3 9.5 179 30-231 321-523 (771)
439 COG4618 ArpD ABC-type protease 94.6 0.045 9.7E-07 59.7 5.2 24 31-54 362-385 (580)
440 COG1428 Deoxynucleoside kinase 94.6 0.028 6.1E-07 54.3 3.3 26 31-56 4-29 (216)
441 TIGR02030 BchI-ChlI magnesium 94.6 0.052 1.1E-06 58.3 5.7 48 8-55 2-49 (337)
442 TIGR01360 aden_kin_iso1 adenyl 94.6 0.033 7.1E-07 55.2 3.9 26 30-55 2-27 (188)
443 PRK15453 phosphoribulokinase; 94.6 0.21 4.5E-06 51.4 9.5 27 30-56 4-30 (290)
444 cd01135 V_A-ATPase_B V/A-type 94.6 0.16 3.4E-06 52.3 8.7 93 31-123 69-179 (276)
445 PTZ00088 adenylate kinase 1; P 94.5 0.12 2.6E-06 52.4 7.7 23 34-56 9-31 (229)
446 TIGR01650 PD_CobS cobaltochela 94.5 0.065 1.4E-06 56.6 6.0 65 6-77 41-105 (327)
447 COG3640 CooC CO dehydrogenase 94.5 0.077 1.7E-06 52.1 5.9 51 33-91 2-52 (255)
448 KOG3864 Uncharacterized conser 94.5 0.011 2.3E-07 56.4 0.1 70 656-728 120-189 (221)
449 PRK00279 adk adenylate kinase; 94.4 0.18 3.8E-06 51.1 8.8 24 33-56 2-25 (215)
450 PRK03846 adenylylsulfate kinas 94.4 0.12 2.7E-06 51.4 7.6 28 29-56 22-49 (198)
451 PF00006 ATP-synt_ab: ATP synt 94.4 0.17 3.8E-06 50.5 8.5 86 32-121 16-116 (215)
452 CHL00081 chlI Mg-protoporyphyr 94.4 0.044 9.5E-07 58.9 4.5 49 8-56 15-63 (350)
453 PF13086 AAA_11: AAA domain; P 94.4 0.083 1.8E-06 54.4 6.6 36 18-55 6-41 (236)
454 PRK12597 F0F1 ATP synthase sub 94.4 0.13 2.9E-06 57.3 8.3 91 31-122 143-249 (461)
455 PRK03839 putative kinase; Prov 94.3 0.038 8.1E-07 54.2 3.6 24 33-56 2-25 (180)
456 PRK04040 adenylate kinase; Pro 94.3 0.041 8.8E-07 54.0 3.8 25 32-56 3-27 (188)
457 COG0283 Cmk Cytidylate kinase 94.3 0.088 1.9E-06 51.1 5.8 25 32-56 5-29 (222)
458 PF00625 Guanylate_kin: Guanyl 94.3 0.053 1.2E-06 53.3 4.6 36 31-68 2-37 (183)
459 PRK14527 adenylate kinase; Pro 94.3 0.11 2.3E-06 51.6 6.7 26 31-56 6-31 (191)
460 PF03193 DUF258: Protein of un 94.3 0.062 1.3E-06 50.5 4.7 35 17-54 24-58 (161)
461 PRK00409 recombination and DNA 94.2 0.21 4.6E-06 60.5 10.3 178 30-230 326-527 (782)
462 cd02028 UMPK_like Uridine mono 94.2 0.053 1.2E-06 52.9 4.3 24 33-56 1-24 (179)
463 PRK14531 adenylate kinase; Pro 94.2 0.17 3.7E-06 49.7 7.9 25 32-56 3-27 (183)
464 KOG1942 DNA helicase, TBP-inte 94.2 0.084 1.8E-06 53.0 5.5 58 5-62 33-95 (456)
465 PRK10751 molybdopterin-guanine 94.2 0.11 2.3E-06 49.8 6.1 28 30-57 5-32 (173)
466 PRK13949 shikimate kinase; Pro 94.2 0.068 1.5E-06 51.6 4.9 25 32-56 2-26 (169)
467 PF08433 KTI12: Chromatin asso 94.2 0.073 1.6E-06 55.4 5.4 26 32-57 2-27 (270)
468 PF02374 ArsA_ATPase: Anion-tr 94.2 0.069 1.5E-06 56.9 5.3 45 32-78 2-46 (305)
469 KOG0651 26S proteasome regulat 94.2 0.061 1.3E-06 54.8 4.5 27 31-57 166-192 (388)
470 cd00227 CPT Chloramphenicol (C 94.1 0.045 9.8E-07 53.3 3.7 25 32-56 3-27 (175)
471 TIGR03880 KaiC_arch_3 KaiC dom 94.1 0.27 5.9E-06 50.1 9.6 47 31-81 16-62 (224)
472 PRK00131 aroK shikimate kinase 94.1 0.046 1E-06 53.3 3.7 26 31-56 4-29 (175)
473 PF13604 AAA_30: AAA domain; P 94.1 0.11 2.5E-06 51.4 6.5 112 21-148 9-131 (196)
474 PF09848 DUF2075: Uncharacteri 94.1 0.16 3.4E-06 55.9 8.2 41 32-72 2-42 (352)
475 PF08298 AAA_PrkA: PrkA AAA do 94.1 0.57 1.2E-05 49.8 11.7 91 10-105 61-164 (358)
476 PF02367 UPF0079: Uncharacteri 94.0 0.13 2.8E-06 45.9 6.0 36 20-57 6-41 (123)
477 KOG0741 AAA+-type ATPase [Post 94.0 0.12 2.6E-06 56.5 6.6 31 28-58 253-283 (744)
478 COG0003 ArsA Predicted ATPase 94.0 0.11 2.4E-06 55.2 6.3 49 31-81 2-50 (322)
479 COG0396 sufC Cysteine desulfur 94.0 0.35 7.5E-06 47.5 9.1 25 31-55 30-54 (251)
480 PRK00625 shikimate kinase; Pro 93.9 0.049 1.1E-06 52.5 3.4 24 33-56 2-25 (173)
481 PF10923 DUF2791: P-loop Domai 93.9 0.32 6.9E-06 53.4 9.9 79 10-90 25-113 (416)
482 PRK13407 bchI magnesium chelat 93.9 0.069 1.5E-06 57.3 4.8 49 7-55 5-53 (334)
483 TIGR00455 apsK adenylylsulfate 93.9 0.32 7E-06 47.8 9.3 28 29-56 16-43 (184)
484 TIGR03574 selen_PSTK L-seryl-t 93.9 0.15 3.2E-06 53.1 7.1 23 34-56 2-24 (249)
485 COG2401 ABC-type ATPase fused 93.9 0.055 1.2E-06 57.3 3.8 27 30-56 408-434 (593)
486 cd02024 NRK1 Nicotinamide ribo 93.9 0.044 9.5E-07 53.4 3.0 23 33-55 1-23 (187)
487 TIGR02322 phosphon_PhnN phosph 93.9 0.049 1.1E-06 53.4 3.4 25 32-56 2-26 (179)
488 COG0714 MoxR-like ATPases [Gen 93.9 0.12 2.5E-06 56.4 6.6 66 9-81 23-88 (329)
489 PRK15424 propionate catabolism 93.9 0.091 2E-06 60.2 5.9 46 9-54 218-265 (538)
490 cd02023 UMPK Uridine monophosp 93.9 0.042 9.1E-07 54.9 2.9 23 33-55 1-23 (198)
491 PRK10820 DNA-binding transcrip 93.9 0.1 2.2E-06 60.4 6.5 65 7-73 201-267 (520)
492 PF00142 Fer4_NifH: 4Fe-4S iro 93.8 0.12 2.5E-06 52.3 5.8 41 32-74 1-41 (273)
493 PRK09302 circadian clock prote 93.8 0.41 9E-06 55.6 11.4 53 31-88 273-325 (509)
494 cd00820 PEPCK_HprK Phosphoenol 93.8 0.062 1.3E-06 46.5 3.4 22 31-52 15-36 (107)
495 COG0488 Uup ATPase components 93.8 0.41 8.8E-06 54.9 10.9 131 31-164 348-511 (530)
496 PRK08927 fliI flagellum-specif 93.8 0.23 5E-06 54.9 8.6 88 31-122 158-260 (442)
497 PF02456 Adeno_IVa2: Adenoviru 93.8 0.44 9.6E-06 48.8 9.7 38 32-69 88-125 (369)
498 PRK06217 hypothetical protein; 93.8 0.05 1.1E-06 53.5 3.2 34 33-67 3-38 (183)
499 PRK14529 adenylate kinase; Pro 93.8 0.2 4.3E-06 50.3 7.4 84 34-122 3-88 (223)
500 PRK06002 fliI flagellum-specif 93.7 0.19 4.2E-06 55.6 7.9 89 31-122 165-266 (450)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.3e-69 Score=632.98 Aligned_cols=682 Identities=31% Similarity=0.480 Sum_probs=505.1
Q ss_pred hhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh-hccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccc
Q 002024 13 ESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ-ESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTIC 91 (979)
Q Consensus 13 vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~-~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 91 (979)
||.+..++++.+.|-+++..+++|+||||+||||||+++.++.. ++.+|+.++||.+|..++...++++|++.++....
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~ 240 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDE 240 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCc
Confidence 99999999999999888779999999999999999999999988 89999999999999999999999999999987443
Q ss_pred ccch---HHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhhc-cCCcceEEcCCCCH
Q 002024 92 GIEE---SARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ-MDAQKIFIVRTLLE 167 (979)
Q Consensus 92 ~~~~---~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~-~~~~~~~~l~~L~~ 167 (979)
.... ...+..+.+.+. ++|++||+||||+..+|+.+..+++....|++|++|||+.+++.. ++....++++.|+.
T Consensus 241 ~~~~~~~~~~~~~i~~~L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~ 319 (889)
T KOG4658|consen 241 EWEDKEEDELASKLLNLLE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTP 319 (889)
T ss_pred ccchhhHHHHHHHHHHHhc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCc
Confidence 3332 355566666665 999999999999999999999999998899999999999999987 77789999999999
Q ss_pred HHHHHHHHHHhCCCCC--CccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCccCCchhhhhh
Q 002024 168 EESWILFREAAGTVVE--NSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQLKKSTPTNIEGMHKDVIS 245 (979)
Q Consensus 168 ~e~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (979)
+|||.+|.+.++.... .+..++++++++++|+|+|||++++|..|+.+....+|+++...+......+.+++.+.+++
T Consensus 320 ~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~ 399 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILP 399 (889)
T ss_pred cccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHH
Confidence 9999999999976532 45588999999999999999999999999999877899999999888866666777889999
Q ss_pred hhhhhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHHHHHHhhhceeEEeCC----c
Q 002024 246 SLELSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHAIVSTLISSFLLIAGD----E 321 (979)
Q Consensus 246 ~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~----~ 321 (979)
+|++||+.|| +++|.||+|||+||+||.|++..++.+|+|+||++.....+...+.+++++.+|++++|+.... .
T Consensus 400 iLklSyd~L~-~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 400 ILKLSYDNLP-EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred hhhccHhhhh-HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 9999999999 5699999999999999999999999999999999887777888888899999999999987743 3
Q ss_pred ceEEechhHHHHHHHHhh-----ccCcceeeeccCCccccCCCCCcCCccEEEccCCcccccCCcCCCCCceEEEccCCC
Q 002024 322 GYVTMHDVVRDVALVISS-----KHNNAFMVKARNGLLEWPIRDTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENS 396 (979)
Q Consensus 322 ~~~~mh~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~ 396 (979)
..|.|||++|++|.+++. +++ .++.++.+..+.+....+..+|++.+.+|.+..++....+++|++|-+.+|.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~ 556 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNS 556 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccc--eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecc
Confidence 689999999999999998 555 4455544555567777888999999999999999988888999999999997
Q ss_pred --CcccChhhhcCCCCccEEEecCC-cCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhh
Q 002024 397 --PLVIPDKFFQGMKDLKVLDLSYI-LPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETF 473 (979)
Q Consensus 397 --~~~~~~~~~~~l~~L~~L~L~~~-~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i 473 (979)
+..++.++|..|+.|++|||+++ ...++|..++.+.+||||+|+++. +..+|..+
T Consensus 557 ~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~----------------------I~~LP~~l 614 (889)
T KOG4658|consen 557 DWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG----------------------ISHLPSGL 614 (889)
T ss_pred hhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC----------------------ccccchHH
Confidence 77889999999999999999983 224788888777777777776664 55667777
Q ss_pred ccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecccccCCcCCCCCCCCC
Q 002024 474 CRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQ 553 (979)
Q Consensus 474 ~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 553 (979)
.+|+.|.+|++..+..+..+|. +...|.+||+|.+.... ...+...+.++.++++|+.+.....+...+.....+.
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l~~s~---~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~ 690 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRLPRSA---LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMT 690 (889)
T ss_pred HHHHhhheeccccccccccccc-hhhhcccccEEEeeccc---cccchhhHHhhhcccchhhheeecchhHhHhhhhhhH
Confidence 7777777777776555555533 24557777777765432 1111223344444444444444222210000000111
Q ss_pred CCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCccccccccccCCcccc
Q 002024 554 HLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTEL 633 (979)
Q Consensus 554 ~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L 633 (979)
.|. ...+.+.+.+ .........+ ..+.+|
T Consensus 691 ~L~------------------------------------------------~~~~~l~~~~-~~~~~~~~~~--~~l~~L 719 (889)
T KOG4658|consen 691 RLR------------------------------------------------SLLQSLSIEG-CSKRTLISSL--GSLGNL 719 (889)
T ss_pred HHH------------------------------------------------HHhHhhhhcc-cccceeeccc--ccccCc
Confidence 111 1111111111 1111122222 347888
Q ss_pred cEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHh
Q 002024 634 KCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRR 713 (979)
Q Consensus 634 ~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 713 (979)
+.|.+.+|...+..............|+++..+.+.+|..+.+. ......|+|+.|++..|+.+..+.+. ...
T Consensus 720 ~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-----~~~~f~~~L~~l~l~~~~~~e~~i~~--~k~ 792 (889)
T KOG4658|consen 720 EELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-----TWLLFAPHLTSLSLVSCRLLEDIIPK--LKA 792 (889)
T ss_pred ceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-----chhhccCcccEEEEecccccccCCCH--HHH
Confidence 99999888654322211111111113667777777777666542 22235678888888888888876654 233
Q ss_pred hccCceEeeeccccccceecccCCCCccccccccccccEE-ecccccccccccccCcccccccCccEEEeccCCCccccc
Q 002024 714 LKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEI-ELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLF 792 (979)
Q Consensus 714 l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~ 792 (979)
+..++.+.+ .|.++..+ .+.+.+.+..+...+. .++.|+.+.+..||++..+
T Consensus 793 ~~~l~~~i~-----------------------~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~- 845 (889)
T KOG4658|consen 793 LLELKELIL-----------------------PFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKL- 845 (889)
T ss_pred hhhcccEEe-----------------------cccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccC-
Confidence 444443222 23444444 3555555555544433 3445888888888877654
Q ss_pred CCChHHhhhcccceEEEecc-cchHHH
Q 002024 793 SHNSLLQSLASLEDVTIISC-INLEEI 818 (979)
Q Consensus 793 ~~~~~l~~l~~L~~L~l~~c-~~l~~~ 818 (979)
|.+.++.+.+| ..+..+
T Consensus 846 ---------P~~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 846 ---------PLLSTLTIVGCEEKLKEY 863 (889)
T ss_pred ---------ccccccceeccccceeec
Confidence 56667777776 444443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=8.8e-60 Score=587.82 Aligned_cols=697 Identities=19% Similarity=0.265 Sum_probs=493.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe---ccC-------
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV---SHN------- 72 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~---~~~------- 72 (979)
++.....+|||++.++++.+++. .+++++|+|+||||+||||||+++|++.. .+|+..+|+.. ...
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccc
Confidence 45567889999999999999885 55689999999999999999999999876 67887777642 110
Q ss_pred ----CC-HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCC
Q 002024 73 ----LS-IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRS 147 (979)
Q Consensus 73 ----~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~ 147 (979)
.. ...++++++.++..... .. ......+.+++. ++|+|||+||||+..+++.+.....+.++|++||||||+
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~-~~-~~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd 333 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKD-IK-IYHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKD 333 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCC-cc-cCCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCc
Confidence 00 12344444444322111 00 011233445554 899999999999998888887766667889999999999
Q ss_pred hhhhhccCCcceEEcCCCCHHHHHHHHHHHhCCCCC-CccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHH
Q 002024 148 QGVCNQMDAQKIFIVRTLLEEESWILFREAAGTVVE-NSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQ 226 (979)
Q Consensus 148 ~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~ 226 (979)
..++..++..+.|+++.++.+||+++|.++|++... +..+.+++.+|+++|+|+|||++++|++|++++. .+|+++++
T Consensus 334 ~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~-~~W~~~l~ 412 (1153)
T PLN03210 334 KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDK-EDWMDMLP 412 (1153)
T ss_pred HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCH-HHHHHHHH
Confidence 999877767789999999999999999999975443 4457789999999999999999999999999865 99999999
Q ss_pred HHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHHH
Q 002024 227 QLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHAI 306 (979)
Q Consensus 227 ~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~ 306 (979)
+++... .+++.++|++||+.|+++..|.||+++|.|+.+..++. +..|++.+... ....
T Consensus 413 ~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~---v~~~l~~~~~~-----------~~~~ 471 (1153)
T PLN03210 413 RLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND---IKLLLANSDLD-----------VNIG 471 (1153)
T ss_pred HHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH---HHHHHHhcCCC-----------chhC
Confidence 986532 35789999999999976558999999998887765543 44555544322 1223
Q ss_pred HHHhhhceeEEeCCcceEEechhHHHHHHHHhhccCcceeeeccCCccccCCCCCcCCccEEEccCCccccc-CCcCCCC
Q 002024 307 VSTLISSFLLIAGDEGYVTMHDVVRDVALVISSKHNNAFMVKARNGLLEWPIRDTFEDLTGISLMSNYIHEV-PAMLECP 385 (979)
Q Consensus 307 l~~L~~~~l~~~~~~~~~~mh~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~ 385 (979)
++.|++++|++.. .+.+.|||++|++++++++++.. ..+.+..-|... .+..+ .......
T Consensus 472 l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~~----~~~~r~~l~~~~--------------di~~vl~~~~g~~ 532 (1153)
T PLN03210 472 LKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQSN----EPGEREFLVDAK--------------DICDVLEDNTGTK 532 (1153)
T ss_pred hHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhcC----CCCcceeEeCHH--------------HHHHHHHhCcccc
Confidence 7899999999884 46899999999999999876531 000010011100 00000 0001112
Q ss_pred CceEEEcc--CCCCcccChhhhcCCCCccEEEecCC-------cCCCCCcCccCCc-CCCEEEeCCCCCCCCccccCCcC
Q 002024 386 KLQVLLLQ--ENSPLVIPDKFFQGMKDLKVLDLSYI-------LPLSLPPSLSFLV-DLRTLRLEDCYLGDLSVIGELSN 455 (979)
Q Consensus 386 ~L~~L~L~--~~~~~~~~~~~~~~l~~L~~L~L~~~-------~~~~~p~~~~~l~-~L~~L~L~~~~l~~l~~i~~L~~ 455 (979)
+.+.+.+. ......+....|.+|++|+.|.+.++ ....+|..+..++ +||+|++.+++++.++.-..+.+
T Consensus 533 ~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~ 612 (1153)
T PLN03210 533 KVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPEN 612 (1153)
T ss_pred eeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccC
Confidence 22222222 22223456677899999999998652 2235778887765 69999999999999977668899
Q ss_pred CcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccce
Q 002024 456 LEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTN 535 (979)
Q Consensus 456 L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~ 535 (979)
|++|+++++.+..+|..+..+++|+.|++++|..+..+|. ++.+++|+.|++++|...... ...+.++++|+.
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~l-----p~si~~L~~L~~ 685 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVEL-----PSSIQYLNKLED 685 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCcccc-----chhhhccCCCCE
Confidence 9999999999999999999999999999999888888886 789999999999887543211 133444455555
Q ss_pred ecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccc
Q 002024 536 LMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEF 615 (979)
Q Consensus 536 L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 615 (979)
|+++ +|
T Consensus 686 L~L~--------------------------------------------------------------------------~c 691 (1153)
T PLN03210 686 LDMS--------------------------------------------------------------------------RC 691 (1153)
T ss_pred EeCC--------------------------------------------------------------------------CC
Confidence 4443 33
Q ss_pred cCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEe
Q 002024 616 IGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLD 695 (979)
Q Consensus 616 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 695 (979)
..+....... ++++|+.|.+++|..++.++. ..++|+.|.++++. +..++. ...+++|+.|.
T Consensus 692 ~~L~~Lp~~i---~l~sL~~L~Lsgc~~L~~~p~---------~~~nL~~L~L~~n~-i~~lP~-----~~~l~~L~~L~ 753 (1153)
T PLN03210 692 ENLEILPTGI---NLKSLYRLNLSGCSRLKSFPD---------ISTNISWLDLDETA-IEEFPS-----NLRLENLDELI 753 (1153)
T ss_pred CCcCccCCcC---CCCCCCEEeCCCCCCcccccc---------ccCCcCeeecCCCc-cccccc-----ccccccccccc
Confidence 3222222211 378999999999987766542 13478888887654 333221 12578888888
Q ss_pred eeccCCcc------cccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEecccccccccccccCc
Q 002024 696 VKWCQNIL------NIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKGDS 769 (979)
Q Consensus 696 l~~c~~l~------~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~ 769 (979)
+.+|.... .+++. .....++|+.|++++|+.+..++. .+..+++|+.|++++|..+..+....
T Consensus 754 l~~~~~~~l~~~~~~l~~~-~~~~~~sL~~L~Ls~n~~l~~lP~---------si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPL-MTMLSPSLTRLFLSDIPSLVELPS---------SIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred ccccchhhccccccccchh-hhhccccchheeCCCCCCccccCh---------hhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 87754211 11111 122346888888888876665543 25567888888888888877765542
Q ss_pred ccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCC
Q 002024 770 RLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCS 849 (979)
Q Consensus 770 ~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 849 (979)
.+++|+.|++++|..+..++. ..++|+.|+++++ .++.+ |.++..+++|+.|++++|+
T Consensus 823 ---~L~sL~~L~Ls~c~~L~~~p~------~~~nL~~L~Ls~n-~i~~i------------P~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 823 ---NLESLESLDLSGCSRLRTFPD------ISTNISDLNLSRT-GIEEV------------PWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ---CccccCEEECCCCCccccccc------cccccCEeECCCC-CCccC------------hHHHhcCCCCCEEECCCCC
Confidence 578888888888888876522 2367888888774 34433 6667788888888888888
Q ss_pred CceEeechhHHhhccCCCEEEEecccccceee
Q 002024 850 KLVNLFTASIAESLVLLKTLRVISCAAVQEIV 881 (979)
Q Consensus 850 ~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 881 (979)
+++.+++. ...+++|+.+++++|+++..++
T Consensus 881 ~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 881 NLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CcCccCcc--cccccCCCeeecCCCccccccc
Confidence 88887554 4677888888888888876553
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.4e-38 Score=341.44 Aligned_cols=275 Identities=32% Similarity=0.548 Sum_probs=220.4
Q ss_pred HHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc
Q 002024 15 RKSIVKQLLEALNN--ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG 92 (979)
Q Consensus 15 R~~~l~~l~~~l~~--~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 92 (979)
||.++++|.+.|.+ ++.++|+|+|++|+|||+||++++++...+.+|+.++|+.++...+..++...|+++++.....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999987 7889999999999999999999999977778999999999999999999999999999887432
Q ss_pred ----cchHHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhhccCC-cceEEcCCCCH
Q 002024 93 ----IEESARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQMDA-QKIFIVRTLLE 167 (979)
Q Consensus 93 ----~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~~~-~~~~~l~~L~~ 167 (979)
.+.......+.+.+. ++++|+||||+|+..+|+.+...+.....|++||||||+..++..+.. ...+++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 233445566666665 779999999999999888887777666779999999999988765544 68999999999
Q ss_pred HHHHHHHHHHhCCCC--CCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCccCCchhhhhh
Q 002024 168 EESWILFREAAGTVV--ENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQLKKSTPTNIEGMHKDVIS 245 (979)
Q Consensus 168 ~e~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 245 (979)
+||+++|.+.++... .....++.+.+|+++|+|+||||+++|++++.+....+|+++++++...... ..+....++.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SSGSCHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 999999999997554 3455667899999999999999999999996654448999999887766533 2235678999
Q ss_pred hhhhhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeecc
Q 002024 246 SLELSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKD 292 (979)
Q Consensus 246 ~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~ 292 (979)
++.+||+.||+ ++|.||.|||+||+++.|+++.++++|+++|++..
T Consensus 239 ~l~~s~~~L~~-~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 239 ALELSYDSLPD-ELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHSSHT-CCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cceechhcCCc-cHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 99999999987 49999999999999999999999999999999865
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=5e-31 Score=331.54 Aligned_cols=489 Identities=18% Similarity=0.122 Sum_probs=205.2
Q ss_pred cCCccEEEccCCccc-ccCCc-C-CCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEE
Q 002024 362 FEDLTGISLMSNYIH-EVPAM-L-ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTL 437 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~-~~~~~-~-~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L 437 (979)
++.++.|++++|.+. .+|.. . .+++|+.|++++|.+....+. ..+++|++|+|++ .+...+|..++.+++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 344555555555443 33321 1 445555555555544422111 2344555555555 3333444445555555555
Q ss_pred EeCCCCCCCC--ccccCCcCCcEEEcccCcCc-ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 438 RLEDCYLGDL--SVIGELSNLEILSLCRSSIK-EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 438 ~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~-~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
+|++|.+... ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|++|++++|..
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence 5555543321 23445555555555555443 34445555555555555554433334443 45555555555544432
Q ss_pred ccccccccchhccccccccceecccccCCcC-CCCC-CCCCCCCeEEEEEcccccccccccccccccccccccccccccc
Q 002024 515 NWDCETNAKVVELQALTRLTNLMFHFPQNSI-LPSH-MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMR 592 (979)
Q Consensus 515 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 592 (979)
.. .....++++++|+.|+++.+.... .|.. ..+++|+.|++..+...
T Consensus 249 ~~-----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-------------------------- 297 (968)
T PLN00113 249 TG-----PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-------------------------- 297 (968)
T ss_pred cc-----ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec--------------------------
Confidence 21 112334444555555554443321 1111 33444444444322110
Q ss_pred cccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCc
Q 002024 593 FSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNH 672 (979)
Q Consensus 593 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 672 (979)
...+.++ ..+++|+.|+++++.........+ ..+++|+.|++++|.....++. ....+++|+.|+++++.
T Consensus 298 -~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~p~------~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 298 -GEIPELV-IQLQNLEILHLFSNNFTGKIPVAL--TSLPRLQVLQLWSNKFSGEIPK------NLGKHNNLTVLDLSTNN 367 (968)
T ss_pred -cCCChhH-cCCCCCcEEECCCCccCCcCChhH--hcCCCCCEEECcCCCCcCcCCh------HHhCCCCCcEEECCCCe
Confidence 0111111 123455555554443322222222 2355555555555532212211 12334455555554433
Q ss_pred cceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccE
Q 002024 673 SFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKE 752 (979)
Q Consensus 673 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~ 752 (979)
.....+. ....+++|+.|.+.+|.....++ ..+..+++|+.|++++|.-...++ ..+..+++|+.
T Consensus 368 l~~~~p~----~~~~~~~L~~L~l~~n~l~~~~p--~~~~~~~~L~~L~L~~n~l~~~~p---------~~~~~l~~L~~ 432 (968)
T PLN00113 368 LTGEIPE----GLCSSGNLFKLILFSNSLEGEIP--KSLGACRSLRRVRLQDNSFSGELP---------SEFTKLPLVYF 432 (968)
T ss_pred eEeeCCh----hHhCcCCCCEEECcCCEecccCC--HHHhCCCCCCEEECcCCEeeeECC---------hhHhcCCCCCE
Confidence 2111100 01123455555555543322222 124445555555555543221111 11333455555
Q ss_pred EecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCC
Q 002024 753 IELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPT 832 (979)
Q Consensus 753 L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 832 (979)
|+++++.....+.. ....+++|+.|++.+|.-...++ .. ...++|+.|++++|..... .|.
T Consensus 433 L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~n~~~~~~p---~~-~~~~~L~~L~ls~n~l~~~------------~~~ 493 (968)
T PLN00113 433 LDISNNNLQGRINS---RKWDMPSLQMLSLARNKFFGGLP---DS-FGSKRLENLDLSRNQFSGA------------VPR 493 (968)
T ss_pred EECcCCcccCccCh---hhccCCCCcEEECcCceeeeecC---cc-cccccceEEECcCCccCCc------------cCh
Confidence 55555432211111 11234555555555554433321 11 1235555555555433221 134
Q ss_pred CccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCcccc
Q 002024 833 TSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLT 912 (979)
Q Consensus 833 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~ 912 (979)
.+..+++|++|++++| ++....|.. +..+++|++|++++|.-...+|.... .+++|+.|++++|+-..
T Consensus 494 ~~~~l~~L~~L~Ls~N-~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~----------~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 494 KLGSLSELMQLKLSEN-KLSGEIPDE-LSSCKKLVSLDLSHNQLSGQIPASFS----------EMPVLSQLDLSQNQLSG 561 (968)
T ss_pred hhhhhhccCEEECcCC-cceeeCChH-HcCccCCCEEECCCCcccccCChhHh----------CcccCCEEECCCCcccc
Confidence 4445555555555554 233222221 34555555565555532222222211 34555566665554333
Q ss_pred ccccCCceeeccccceeeeccCCCceeecC
Q 002024 913 CFCSGQFLIEFPALEMLTIAECPKIKTFGY 942 (979)
Q Consensus 913 ~l~~~~~~~~~~~L~~L~i~~C~~L~~l~~ 942 (979)
.+|... ..+++|+.|++++|+-...+|.
T Consensus 562 ~~p~~l--~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 562 EIPKNL--GNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cCChhH--hcCcccCEEeccCCcceeeCCC
Confidence 444322 1245556666665554444554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.4e-30 Score=327.65 Aligned_cols=486 Identities=19% Similarity=0.145 Sum_probs=357.9
Q ss_pred CcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEe
Q 002024 361 TFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L 439 (979)
.+.++++|++++|.+....+...+++|++|++++|.+....+..++.+++|++|+|++ .+...+|..++++++|++|+|
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 6789999999999987544445789999999999999865556689999999999999 556688999999999999999
Q ss_pred CCCCCCCC--ccccCCcCCcEEEcccCcCc-ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccc
Q 002024 440 EDCYLGDL--SVIGELSNLEILSLCRSSIK-EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNW 516 (979)
Q Consensus 440 ~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~-~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~ 516 (979)
++|.+... ..++++++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|+.|++++|....
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeec
Confidence 99987643 57899999999999999887 78999999999999999998766677776 8999999999999886532
Q ss_pred ccccccchhccccccccceecccccCCcC-CCCC-CCCCCCCeEEEEEcccccccccccccccccccccccccccccccc
Q 002024 517 DCETNAKVVELQALTRLTNLMFHFPQNSI-LPSH-MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFS 594 (979)
Q Consensus 517 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 594 (979)
.....+..+++|+.|+++++.... .|.. ..+++|+.|.+..+... .
T Consensus 275 -----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~---------------------------~ 322 (968)
T PLN00113 275 -----PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT---------------------------G 322 (968)
T ss_pred -----cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC---------------------------C
Confidence 223567789999999999887653 3333 57788888887543210 0
Q ss_pred cchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccc
Q 002024 595 PLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSF 674 (979)
Q Consensus 595 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 674 (979)
..+.. ...+++|+.|+++++.........+ ..+++|+.|++++|.....++. ....+++|+.|.+.++...
T Consensus 323 ~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n~l~~~~p~------~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 323 KIPVA-LTSLPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTNNLTGEIPE------GLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred cCChh-HhcCCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCCeeEeeCCh------hHhCcCCCCEEECcCCEec
Confidence 11122 2246899999998876554444444 4489999999998843323321 2344668899999776533
Q ss_pred eeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEe
Q 002024 675 VEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIE 754 (979)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 754 (979)
...+ ...+.+++|+.|++.+|......+ ..+..+++|+.|+++++.-...++ .....+++|+.|+
T Consensus 394 ~~~p----~~~~~~~~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~ 458 (968)
T PLN00113 394 GEIP----KSLGACRSLRRVRLQDNSFSGELP--SEFTKLPLVYFLDISNNNLQGRIN---------SRKWDMPSLQMLS 458 (968)
T ss_pred ccCC----HHHhCCCCCCEEECcCCEeeeECC--hhHhcCCCCCEEECcCCcccCccC---------hhhccCCCCcEEE
Confidence 2221 112468999999999986544433 237789999999999875333221 1234579999999
Q ss_pred cccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCc
Q 002024 755 LIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTS 834 (979)
Q Consensus 755 l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 834 (979)
+++|.....+... ...++|+.|++++|.-.... +..+.++++|+.|++++|.....+ |..+
T Consensus 459 L~~n~~~~~~p~~----~~~~~L~~L~ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~------------p~~~ 519 (968)
T PLN00113 459 LARNKFFGGLPDS----FGSKRLENLDLSRNQFSGAV---PRKLGSLSELMQLKLSENKLSGEI------------PDEL 519 (968)
T ss_pred CcCceeeeecCcc----cccccceEEECcCCccCCcc---ChhhhhhhccCEEECcCCcceeeC------------ChHH
Confidence 9998654443332 24578999999998654444 567889999999999998654433 6777
Q ss_pred cccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCcccccc
Q 002024 835 QGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCF 914 (979)
Q Consensus 835 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 914 (979)
..+++|++|+|++|. ++...|. .+..+++|++|++++|.-...+|.... .+++|+.|++++|+-...+
T Consensus 520 ~~l~~L~~L~Ls~N~-l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~----------~l~~L~~l~ls~N~l~~~~ 587 (968)
T PLN00113 520 SSCKKLVSLDLSHNQ-LSGQIPA-SFSEMPVLSQLDLSQNQLSGEIPKNLG----------NVESLVQVNISHNHLHGSL 587 (968)
T ss_pred cCccCCCEEECCCCc-ccccCCh-hHhCcccCCEEECCCCcccccCChhHh----------cCcccCEEeccCCcceeeC
Confidence 889999999999974 5544343 367899999999999965545555432 6889999999998865667
Q ss_pred ccCCceeeccccceeeeccCCCc
Q 002024 915 CSGQFLIEFPALEMLTIAECPKI 937 (979)
Q Consensus 915 ~~~~~~~~~~~L~~L~i~~C~~L 937 (979)
|.... +.++....+.+.+.+
T Consensus 588 p~~~~---~~~~~~~~~~~n~~l 607 (968)
T PLN00113 588 PSTGA---FLAINASAVAGNIDL 607 (968)
T ss_pred CCcch---hcccChhhhcCCccc
Confidence 75433 244444555555544
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=4.8e-22 Score=209.32 Aligned_cols=365 Identities=19% Similarity=0.195 Sum_probs=226.4
Q ss_pred ccEEEccCCcccccCC--c--CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeC
Q 002024 365 LTGISLMSNYIHEVPA--M--LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLE 440 (979)
Q Consensus 365 l~~l~l~~~~~~~~~~--~--~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~ 440 (979)
-+.++.+++.+..+.. + .=.+..++|++++|.+.++...+|.++++|+.+++..+.-..+|.......||+.|+|.
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 3456666666665421 1 12456677888888888888888888888888888885555788766677788888888
Q ss_pred CCCCCCC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccc
Q 002024 441 DCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWD 517 (979)
Q Consensus 441 ~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~ 517 (979)
+|.|+.+ +.+.-++.|++||||.|.+.++|. +|.+=.++++|++++|. ++.+..+.+..+.+|-+|.++.|...
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrit-- 210 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRIT-- 210 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccc--
Confidence 8888877 567788888888888888887764 56666788888888854 66666666788888888888777543
Q ss_pred cccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEEccccccccccccccccccccccccccccccccc
Q 002024 518 CETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSP 595 (979)
Q Consensus 518 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 595 (979)
.-....|++|++|+.|++..+.+...... ..+.+|+.|.+..++.
T Consensus 211 ---tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I------------------------------ 257 (873)
T KOG4194|consen 211 ---TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI------------------------------ 257 (873)
T ss_pred ---ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc------------------------------
Confidence 22335677788888888877665433222 3333344333322111
Q ss_pred chHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccce
Q 002024 596 LLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFV 675 (979)
Q Consensus 596 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 675 (979)
..+++ ..+ .++.++++|+|..+ .+..+..+ ..-++.+|++|+++.+. +.
T Consensus 258 --------------------~kL~D--G~F--y~l~kme~l~L~~N-~l~~vn~g-----~lfgLt~L~~L~lS~Na-I~ 306 (873)
T KOG4194|consen 258 --------------------SKLDD--GAF--YGLEKMEHLNLETN-RLQAVNEG-----WLFGLTSLEQLDLSYNA-IQ 306 (873)
T ss_pred --------------------ccccC--cce--eeecccceeecccc-hhhhhhcc-----cccccchhhhhccchhh-hh
Confidence 01111 111 23566666666655 33333221 22345566666665432 21
Q ss_pred eecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEec
Q 002024 676 EICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIEL 755 (979)
Q Consensus 676 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l 755 (979)
.+- .-.....++|++|++++. .++.+.+ +.+..+..|++|.++... +.++... .+..+.+|++|+|
T Consensus 307 rih---~d~WsftqkL~~LdLs~N-~i~~l~~-~sf~~L~~Le~LnLs~Ns-i~~l~e~--------af~~lssL~~LdL 372 (873)
T KOG4194|consen 307 RIH---IDSWSFTQKLKELDLSSN-RITRLDE-GSFRVLSQLEELNLSHNS-IDHLAEG--------AFVGLSSLHKLDL 372 (873)
T ss_pred eee---cchhhhcccceeEecccc-ccccCCh-hHHHHHHHhhhhcccccc-hHHHHhh--------HHHHhhhhhhhcC
Confidence 110 001124577777777765 3455443 346677777777776532 3332221 2445677777777
Q ss_pred ccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEeccc
Q 002024 756 IALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCI 813 (979)
Q Consensus 756 ~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 813 (979)
+++.-.-.|.+....+..+++|+.|.+.+ ++++.+.. ..+.++++||.|++.++.
T Consensus 373 r~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k--rAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 373 RSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK--RAFSGLEALEHLDLGDNA 427 (873)
T ss_pred cCCeEEEEEecchhhhccchhhhheeecC-ceeeecch--hhhccCcccceecCCCCc
Confidence 76654444555555556677788888877 56666643 567777888888887753
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.2e-19 Score=227.99 Aligned_cols=345 Identities=19% Similarity=0.263 Sum_probs=248.3
Q ss_pred CCCcCCccEEEccCCccc-------ccCC-cCCC-CCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCcc
Q 002024 359 RDTFEDLTGISLMSNYIH-------EVPA-MLEC-PKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLS 429 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~-------~~~~-~~~~-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~ 429 (979)
+..+++++.|.+.++... .+|. +..+ .+|+.|++.++.+..+|..+ ...+|+.|+|+++....+|..+.
T Consensus 554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~ 631 (1153)
T PLN03210 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVH 631 (1153)
T ss_pred HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccc
Confidence 466788888888655322 2342 2233 57999999999998998764 57899999999944448899999
Q ss_pred CCcCCCEEEeCCCC-CCCCccccCCcCCcEEEcccC-cCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEE
Q 002024 430 FLVDLRTLRLEDCY-LGDLSVIGELSNLEILSLCRS-SIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEF 507 (979)
Q Consensus 430 ~l~~L~~L~L~~~~-l~~l~~i~~L~~L~~L~Ls~~-~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L 507 (979)
.+++|++|+|++|. +..++.++.+++|++|+|++| .+..+|..+.++++|+.|++++|..+..+|.. + ++++|+.|
T Consensus 632 ~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L 709 (1153)
T PLN03210 632 SLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRL 709 (1153)
T ss_pred cCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEE
Confidence 99999999999884 788888999999999999998 67899999999999999999999999999986 3 89999999
Q ss_pred EcccCccccccccccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEccccccccccccccccccccccccc
Q 002024 508 YMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMIL 587 (979)
Q Consensus 508 ~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 587 (979)
++++|......+ ...++|+.|+++.+....+|....+++|++|.+......... .
T Consensus 710 ~Lsgc~~L~~~p--------~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~-------------~---- 764 (1153)
T PLN03210 710 NLSGCSRLKSFP--------DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW-------------E---- 764 (1153)
T ss_pred eCCCCCCccccc--------cccCCcCeeecCCCccccccccccccccccccccccchhhcc-------------c----
Confidence 999986432211 124678899999988888887777788887776432110000 0
Q ss_pred ccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhc
Q 002024 588 SHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667 (979)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 667 (979)
...+........+++|+.|+++++.....+...+ .++++|+.|++.+|..++.++.. ..+++|+.|.
T Consensus 765 ----~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si--~~L~~L~~L~Ls~C~~L~~LP~~-------~~L~sL~~L~ 831 (1153)
T PLN03210 765 ----RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSI--QNLHKLEHLEIENCINLETLPTG-------INLESLESLD 831 (1153)
T ss_pred ----cccccchhhhhccccchheeCCCCCCccccChhh--hCCCCCCEEECCCCCCcCeeCCC-------CCccccCEEE
Confidence 0001111122234778888888776665555554 45888888888888877776532 2467888888
Q ss_pred cccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCcccccccc
Q 002024 668 IYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFL 747 (979)
Q Consensus 668 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 747 (979)
+++|..+..++ ...++|+.|++.++ .++.+|. .+..+++|+.|++++|+++..++.. ...+
T Consensus 832 Ls~c~~L~~~p-------~~~~nL~~L~Ls~n-~i~~iP~--si~~l~~L~~L~L~~C~~L~~l~~~---------~~~L 892 (1153)
T PLN03210 832 LSGCSRLRTFP-------DISTNISDLNLSRT-GIEEVPW--WIEKFSNLSFLDMNGCNNLQRVSLN---------ISKL 892 (1153)
T ss_pred CCCCCcccccc-------ccccccCEeECCCC-CCccChH--HHhcCCCCCEEECCCCCCcCccCcc---------cccc
Confidence 88887765432 12467888888775 3455442 3667888888888888877766432 3446
Q ss_pred ccccEEecccccccccc
Q 002024 748 ASLKEIELIALPEMTHI 764 (979)
Q Consensus 748 ~~L~~L~l~~~~~l~~i 764 (979)
++|+.+.+++|+.++.+
T Consensus 893 ~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 893 KHLETVDFSDCGALTEA 909 (1153)
T ss_pred cCCCeeecCCCcccccc
Confidence 77777888888777653
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.83 E-value=3e-21 Score=203.39 Aligned_cols=322 Identities=19% Similarity=0.215 Sum_probs=206.8
Q ss_pred CCcCCccEEEccCCcccccCCcCCC-CCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCC-cCccCCcCCCEE
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLEC-PKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLP-PSLSFLVDLRTL 437 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p-~~~~~l~~L~~L 437 (979)
..+++++.+++..|.++.+|.+... .+++.|+|.+|.+..+..+.++.++.||+||||.+....+| .+|..-.++++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L 178 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKL 178 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEE
Confidence 4567788888888888888877754 44888888888888887777888888888888884333554 456666788888
Q ss_pred EeCCCCCCCC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 438 RLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 438 ~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
+|.+|.|+.+ ..|..+.+|.+|.|++|.++.+|. .|.+|++|+.|++..|. ++.+..-.+..|++|+.|.+..|..
T Consensus 179 ~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 179 NLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred eeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCc
Confidence 8888888877 567788888888888888888874 56668888888887743 4444333366777777777766543
Q ss_pred ccccccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEEcccccccccccccccccccccccccccccc
Q 002024 515 NWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMR 592 (979)
Q Consensus 515 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 592 (979)
..-.+ +.|-.+.++++|++..+..+...+. ..++.|+.|++..+....
T Consensus 258 ~kL~D-----G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~r------------------------- 307 (873)
T KOG4194|consen 258 SKLDD-----GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQR------------------------- 307 (873)
T ss_pred ccccC-----cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhe-------------------------
Confidence 21111 3344566667777776666554443 566666666654332100
Q ss_pred cccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCc
Q 002024 593 FSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNH 672 (979)
Q Consensus 593 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 672 (979)
..... +...++|+.|+|+.+....--...+ ..+..|+.|.|+.+ .+..+.+. .+.++.+|++|++.++.
T Consensus 308 -ih~d~--WsftqkL~~LdLs~N~i~~l~~~sf--~~L~~Le~LnLs~N-si~~l~e~-----af~~lssL~~LdLr~N~ 376 (873)
T KOG4194|consen 308 -IHIDS--WSFTQKLKELDLSSNRITRLDEGSF--RVLSQLEELNLSHN-SIDHLAEG-----AFVGLSSLHKLDLRSNE 376 (873)
T ss_pred -eecch--hhhcccceeEeccccccccCChhHH--HHHHHhhhhccccc-chHHHHhh-----HHHHhhhhhhhcCcCCe
Confidence 11111 2245778888886654322111222 34677888888776 44444322 44567788888887543
Q ss_pred cceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccc
Q 002024 673 SFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCA 726 (979)
Q Consensus 673 ~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 726 (979)
----+..+ ......+++|++|.+.+. +++.+ +..++..+++||+|++.+..
T Consensus 377 ls~~IEDa-a~~f~gl~~LrkL~l~gN-qlk~I-~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 377 LSWCIEDA-AVAFNGLPSLRKLRLTGN-QLKSI-PKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred EEEEEecc-hhhhccchhhhheeecCc-eeeec-chhhhccCcccceecCCCCc
Confidence 21111111 222235889999999886 45665 45568888999999987654
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.4e-21 Score=217.33 Aligned_cols=453 Identities=20% Similarity=0.207 Sum_probs=278.6
Q ss_pred CccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCC
Q 002024 364 DLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLED 441 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~ 441 (979)
.+..|++..|.+...| ...+.-+|++|++++|.+..+|.. +..+.+|+.|+++.+.....|.+..++++|++|.|.+
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~ 100 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN 100 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc
Confidence 3677778888776654 223555688888888888888765 6778888888888865558888888888888888888
Q ss_pred CCCCCCc-cccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 442 CYLGDLS-VIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 442 ~~l~~l~-~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
+.++.++ ++..+.+|++|++++|++...|..+..+..+..+..++|..+..++.. . ++++++..+...
T Consensus 101 n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~--~----ik~~~l~~n~l~----- 169 (1081)
T KOG0618|consen 101 NRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT--S----IKKLDLRLNVLG----- 169 (1081)
T ss_pred chhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc--c----chhhhhhhhhcc-----
Confidence 8887774 688888888888888888888888888888888888876444444432 1 344444333221
Q ss_pred ccchhccccccccceecccccCCcCCCCCCCCCCCCeEE----------EEEcccccccccccccccccccccccccccc
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFT----------IAVRVSWEASDFILSTSSVNKYSTRMILSHD 590 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~----------i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 590 (979)
...+.+...++. .|+++++.+. ......+.+|+.+. +.+...................+
T Consensus 170 ~~~~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p-------- 238 (1081)
T KOG0618|consen 170 GSFLIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP-------- 238 (1081)
T ss_pred cchhcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc--------
Confidence 122233344444 4555555543 22222333333322 22211111000000000111111
Q ss_pred cccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhcccc
Q 002024 591 MRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYS 670 (979)
Q Consensus 591 ~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 670 (979)
...+|++++++... +.....++. .+.+|+.+...++ .+..++.. .....+|+.|.+..
T Consensus 239 ------------~p~nl~~~dis~n~-l~~lp~wi~--~~~nle~l~~n~N-~l~~lp~r------i~~~~~L~~l~~~~ 296 (1081)
T KOG0618|consen 239 ------------VPLNLQYLDISHNN-LSNLPEWIG--ACANLEALNANHN-RLVALPLR------ISRITSLVSLSAAY 296 (1081)
T ss_pred ------------ccccceeeecchhh-hhcchHHHH--hcccceEecccch-hHHhhHHH------HhhhhhHHHHHhhh
Confidence 12566777765433 223334443 3777777777766 33443322 22344677766654
Q ss_pred CccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhcc-CceEeeeccccccceecccCCCCcccccccccc
Q 002024 671 NHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKN-LEYCSVFFCASLLHVFDLQGLDNVNQETKFLAS 749 (979)
Q Consensus 671 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~-L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 749 (979)
+. ++.++ ...+.+.+|+.|++... ++..+|. ..+..... |+.+..+ |.++...+.. +...++.
T Consensus 297 ne-l~yip----~~le~~~sL~tLdL~~N-~L~~lp~-~~l~v~~~~l~~ln~s-~n~l~~lp~~--------~e~~~~~ 360 (1081)
T KOG0618|consen 297 NE-LEYIP----PFLEGLKSLRTLDLQSN-NLPSLPD-NFLAVLNASLNTLNVS-SNKLSTLPSY--------EENNHAA 360 (1081)
T ss_pred hh-hhhCC----Ccccccceeeeeeehhc-cccccch-HHHhhhhHHHHHHhhh-hccccccccc--------cchhhHH
Confidence 32 22221 11234778888888765 3455444 22333332 5555554 3334433322 1345688
Q ss_pred ccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccC
Q 002024 750 LKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNS 829 (979)
Q Consensus 750 L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 829 (979)
|+.|++.++.--.+.|. .+..+.+|+.|++++ +.|... | ++.+.++..|++|+++| ++++.+
T Consensus 361 Lq~LylanN~Ltd~c~p---~l~~~~hLKVLhLsy-NrL~~f-p-as~~~kle~LeeL~LSG-NkL~~L----------- 422 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFP---VLVNFKHLKVLHLSY-NRLNSF-P-ASKLRKLEELEELNLSG-NKLTTL----------- 422 (1081)
T ss_pred HHHHHHhcCcccccchh---hhccccceeeeeecc-cccccC-C-HHHHhchHHhHHHhccc-chhhhh-----------
Confidence 99999988754343333 345899999999999 556544 4 68899999999999999 567766
Q ss_pred CCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceee-ccccccccccC
Q 002024 830 QPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEF-PSLFEMELRNL 908 (979)
Q Consensus 830 ~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c 908 (979)
|..+..++.|++|...+ +++... |. ...++.|+.+|++ |.+++.+..... .+ |+|+.|+++++
T Consensus 423 -p~tva~~~~L~tL~ahs-N~l~~f-Pe--~~~l~qL~~lDlS-~N~L~~~~l~~~----------~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 423 -PDTVANLGRLHTLRAHS-NQLLSF-PE--LAQLPQLKVLDLS-CNNLSEVTLPEA----------LPSPNLKYLDLSGN 486 (1081)
T ss_pred -hHHHHhhhhhHHHhhcC-Cceeec-hh--hhhcCcceEEecc-cchhhhhhhhhh----------CCCcccceeeccCC
Confidence 66778899999997766 466665 43 5788999999995 667776544322 34 89999999998
Q ss_pred ccc
Q 002024 909 DSL 911 (979)
Q Consensus 909 ~~L 911 (979)
..+
T Consensus 487 ~~l 489 (1081)
T KOG0618|consen 487 TRL 489 (1081)
T ss_pred ccc
Confidence 864
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=1.4e-21 Score=206.94 Aligned_cols=159 Identities=20% Similarity=0.171 Sum_probs=81.4
Q ss_pred CCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEecccccccccccc
Q 002024 687 SFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWK 766 (979)
Q Consensus 687 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~ 766 (979)
.+.+|..++++.. .+..+| ..+..+++|+.|.+++.. ++.+ +-......+|+.|+++.+ .|+.+..
T Consensus 220 ~l~NL~dvDlS~N-~Lp~vP--ecly~l~~LrrLNLS~N~-iteL---------~~~~~~W~~lEtLNlSrN-QLt~LP~ 285 (1255)
T KOG0444|consen 220 DLHNLRDVDLSEN-NLPIVP--ECLYKLRNLRRLNLSGNK-ITEL---------NMTEGEWENLETLNLSRN-QLTVLPD 285 (1255)
T ss_pred hhhhhhhcccccc-CCCcch--HHHhhhhhhheeccCcCc-eeee---------eccHHHHhhhhhhccccc-hhccchH
Confidence 4566666666643 334333 235667777777776532 2221 111223355666666554 2333322
Q ss_pred cCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEe
Q 002024 767 GDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQ 846 (979)
Q Consensus 767 ~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 846 (979)
. ...+++|+.|.+.+ ++|+.-.. |++++.|.+|+.+...+ ++++-. |+.+..|..|+.|.++
T Consensus 286 a---vcKL~kL~kLy~n~-NkL~FeGi-PSGIGKL~~Levf~aan-N~LElV------------PEglcRC~kL~kL~L~ 347 (1255)
T KOG0444|consen 286 A---VCKLTKLTKLYANN-NKLTFEGI-PSGIGKLIQLEVFHAAN-NKLELV------------PEGLCRCVKLQKLKLD 347 (1255)
T ss_pred H---HhhhHHHHHHHhcc-CcccccCC-ccchhhhhhhHHHHhhc-cccccC------------chhhhhhHHHHHhccc
Confidence 2 22455556555544 33432222 55666666666666555 233322 5566666666666665
Q ss_pred cCCCceEeechhHHhhccCCCEEEEeccccccee
Q 002024 847 SCSKLVNLFTASIAESLVLLKTLRVISCAAVQEI 880 (979)
Q Consensus 847 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~ 880 (979)
. +++..+|.. +.-++.|+.|+++.++++..-
T Consensus 348 ~-NrLiTLPea--IHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 348 H-NRLITLPEA--IHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred c-cceeechhh--hhhcCCcceeeccCCcCccCC
Confidence 4 455554433 455666666666666665433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=8.5e-22 Score=198.59 Aligned_cols=457 Identities=21% Similarity=0.176 Sum_probs=292.7
Q ss_pred CCcCCccEEEccCCcccccCC-cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEE
Q 002024 360 DTFEDLTGISLMSNYIHEVPA-MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~ 438 (979)
..++.+.++.+++|.+..+|+ ...+..+..|+.++|++..+|+. +..+.+|+.|+++++....+|++++.+..|+.|+
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~-i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~ 143 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQ-IGSLISLVKLDCSSNELKELPDSIGRLLDLEDLD 143 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHH-HhhhhhhhhhhccccceeecCchHHHHhhhhhhh
Confidence 345678889999999888884 45788899999999999999887 4668889999999854448999999999999999
Q ss_pred eCCCCCCCC-ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccc
Q 002024 439 LEDCYLGDL-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWD 517 (979)
Q Consensus 439 L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~ 517 (979)
..+|++..+ ++++.+..|..|++.+|+++.+|...-+++.|++||+.. +.++.+|++ ++.|.+|+.|++..+...
T Consensus 144 ~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~Nki~-- 219 (565)
T KOG0472|consen 144 ATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRNKIR-- 219 (565)
T ss_pred ccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhcccc--
Confidence 999998888 678899999999999999999988777799999999888 458889988 899999999999877543
Q ss_pred cccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEEccccccccccccccccccccccccccccccccc
Q 002024 518 CETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSP 595 (979)
Q Consensus 518 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 595 (979)
.+.+|..+..|.+|.+..+.+..+|.. .++.++..|+++.+.. ..
T Consensus 220 -----~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNkl----------------------------ke 266 (565)
T KOG0472|consen 220 -----FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKL----------------------------KE 266 (565)
T ss_pred -----cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccc----------------------------cc
Confidence 335778888899999988888887765 5778888888765432 22
Q ss_pred chHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhcc---ccCc
Q 002024 596 LLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTI---YSNH 672 (979)
Q Consensus 596 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l---~~~~ 672 (979)
.|..+- .+.+|++|+++++.. ......+ +++ .|++|.+.|++- ..+..+.- .-+.-.-|++|.= ++..
T Consensus 267 ~Pde~c-lLrsL~rLDlSNN~i-s~Lp~sL--gnl-hL~~L~leGNPl-rTiRr~ii---~~gT~~vLKyLrs~~~~dgl 337 (565)
T KOG0472|consen 267 VPDEIC-LLRSLERLDLSNNDI-SSLPYSL--GNL-HLKFLALEGNPL-RTIRREII---SKGTQEVLKYLRSKIKDDGL 337 (565)
T ss_pred CchHHH-HhhhhhhhcccCCcc-ccCCccc--ccc-eeeehhhcCCch-HHHHHHHH---cccHHHHHHHHHHhhccCCC
Confidence 333332 458899999976543 3444455 346 888888888752 21111100 0000012333332 1111
Q ss_pred cceeec---cc----CccCC-CCCCCccEEeeeccCCcccccchhHHHhhc--cCceEeeeccccccceecccCCCCccc
Q 002024 673 SFVEIC---HG----QVLPA-GSFNKLKRLDVKWCQNILNIAPIHLLRRLK--NLEYCSVFFCASLLHVFDLQGLDNVNQ 742 (979)
Q Consensus 673 ~l~~~~---~~----~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~--~L~~L~l~~c~~l~~~~~~~~~~~~~~ 742 (979)
+.+.-. .. ..|+. ...-+.+.|.+++- .++.+|... +..-. -...++++.. ++.++|.
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~-qlt~VPdEV-fea~~~~~Vt~VnfskN-qL~elPk--------- 405 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDK-QLTLVPDEV-FEAAKSEIVTSVNFSKN-QLCELPK--------- 405 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhccccc-ccccCCHHH-HHHhhhcceEEEecccc-hHhhhhh---------
Confidence 111000 00 01222 24457788888774 455555433 22221 1333444432 2222221
Q ss_pred ccccccccc-EEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhh
Q 002024 743 ETKFLASLK-EIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGK 821 (979)
Q Consensus 743 ~~~~~~~L~-~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 821 (979)
....+..+. .+.+++. .... .+..+..+++|..|++++ +-|.++ |.-+..+..|++|+++.+.+ ..+
T Consensus 406 ~L~~lkelvT~l~lsnn-~isf---v~~~l~~l~kLt~L~L~N-N~Ln~L---P~e~~~lv~Lq~LnlS~NrF-r~l--- 473 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNN-KISF---VPLELSQLQKLTFLDLSN-NLLNDL---PEEMGSLVRLQTLNLSFNRF-RML--- 473 (565)
T ss_pred hhHHHHHHHHHHHhhcC-cccc---chHHHHhhhcceeeeccc-chhhhc---chhhhhhhhhheeccccccc-ccc---
Confidence 111111121 1222221 1111 112334677888888877 456666 56777788888888887522 211
Q ss_pred cccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeecccc
Q 002024 822 MEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLF 901 (979)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~ 901 (979)
|..+..+..|+++-.++ .++..+.+. .++.+.+|.+|++.++ .+..+|+... .+.+|+
T Consensus 474 ---------P~~~y~lq~lEtllas~-nqi~~vd~~-~l~nm~nL~tLDL~nN-dlq~IPp~Lg----------nmtnL~ 531 (565)
T KOG0472|consen 474 ---------PECLYELQTLETLLASN-NQIGSVDPS-GLKNMRNLTTLDLQNN-DLQQIPPILG----------NMTNLR 531 (565)
T ss_pred ---------hHHHhhHHHHHHHHhcc-ccccccChH-HhhhhhhcceeccCCC-chhhCChhhc----------ccccee
Confidence 44444555566664444 567776444 4677888888888655 6777776544 788888
Q ss_pred ccccccCc
Q 002024 902 EMELRNLD 909 (979)
Q Consensus 902 ~L~l~~c~ 909 (979)
+|++.|+|
T Consensus 532 hLeL~gNp 539 (565)
T KOG0472|consen 532 HLELDGNP 539 (565)
T ss_pred EEEecCCc
Confidence 88888866
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=7.9e-22 Score=198.79 Aligned_cols=190 Identities=25% Similarity=0.316 Sum_probs=161.9
Q ss_pred CCccEEEccCCcccccC-CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCC
Q 002024 363 EDLTGISLMSNYIHEVP-AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLED 441 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~ 441 (979)
.++..+.+++|.+..+. +..++..+.+|.++.|...++|+. ++++..++.|+.+++....+|+.++.+..|+.|+.++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~a-ig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAA-IGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHH-HHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 35667889999988665 566899999999999999999987 6789999999999944449999999999999999999
Q ss_pred CCCCCC-ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 442 CYLGDL-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 442 ~~l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
+.+.++ ++++.+..|..|+-.+|++.++|..+.++.+|..|++.++ .++.+|++.+. ++.|++|+...+..
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~-m~~L~~ld~~~N~L------ 195 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIA-MKRLKHLDCNSNLL------ 195 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc-chhhCCHHHHH-HHHHHhcccchhhh------
Confidence 998888 7899999999999999999999999999999999999995 57888888555 99999999876644
Q ss_pred ccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEE
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIA 561 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~ 561 (979)
...+.+++.+.+|..|++..+.+..+|+...+..|.+|.+.
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhc
Confidence 34457889999999999999998888766666666665543
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.75 E-value=4.7e-20 Score=195.44 Aligned_cols=151 Identities=15% Similarity=0.094 Sum_probs=103.4
Q ss_pred CCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEeccccc-cccccc
Q 002024 687 SFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALP-EMTHIW 765 (979)
Q Consensus 687 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~l~~i~ 765 (979)
.+++|+.|.+++.. ++.+... .....+|+.|.++.. ++..+| .....+++|++|.+.++. ....|.
T Consensus 243 ~l~~LrrLNLS~N~-iteL~~~--~~~W~~lEtLNlSrN-QLt~LP---------~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNK-ITELNMT--EGEWENLETLNLSRN-QLTVLP---------DAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred hhhhhheeccCcCc-eeeeecc--HHHHhhhhhhccccc-hhccch---------HHHhhhHHHHHHHhccCcccccCCc
Confidence 45677777777753 3433221 345688999999863 343433 335667899998887753 123333
Q ss_pred ccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEE
Q 002024 766 KGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINI 845 (979)
Q Consensus 766 ~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 845 (979)
. .++.+.+|+.++..+ ++|.-+ |+.++.+..|+.|.++.+.-+ . .|..+.-++.|+.|++
T Consensus 310 S---GIGKL~~Levf~aan-N~LElV---PEglcRC~kL~kL~L~~NrLi-T------------LPeaIHlL~~l~vLDl 369 (1255)
T KOG0444|consen 310 S---GIGKLIQLEVFHAAN-NKLELV---PEGLCRCVKLQKLKLDHNRLI-T------------LPEAIHLLPDLKVLDL 369 (1255)
T ss_pred c---chhhhhhhHHHHhhc-cccccC---chhhhhhHHHHHhccccccee-e------------chhhhhhcCCcceeec
Confidence 3 345788889888887 667655 789999999999999875433 3 3888899999999999
Q ss_pred ecCCCceEeechhHHhhccCCCEEEEe
Q 002024 846 QSCSKLVNLFTASIAESLVLLKTLRVI 872 (979)
Q Consensus 846 ~~c~~l~~~~~~~~~~~l~~L~~L~l~ 872 (979)
++.+++..-|.++ ..-++|+.-+|.
T Consensus 370 reNpnLVMPPKP~--da~~~lefYNID 394 (1255)
T KOG0444|consen 370 RENPNLVMPPKPN--DARKKLEFYNID 394 (1255)
T ss_pred cCCcCccCCCCcc--hhhhcceeeecc
Confidence 9999998743332 222577776664
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.69 E-value=1.2e-18 Score=194.31 Aligned_cols=144 Identities=30% Similarity=0.401 Sum_probs=122.2
Q ss_pred EEEccCCcccccCCc-CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCC
Q 002024 367 GISLMSNYIHEVPAM-LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLG 445 (979)
Q Consensus 367 ~l~l~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~ 445 (979)
+++++...+.-+|.- ..-..+..|++..|.+...|-.+..+.-+|++|+|+++...++|..+..+.+|+.|+++.|.+.
T Consensus 2 ~vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~ 81 (1081)
T KOG0618|consen 2 HVDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR 81 (1081)
T ss_pred CcccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh
Confidence 356677777777733 3344489999999999988888788877899999999555599999999999999999999988
Q ss_pred CC-ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccC
Q 002024 446 DL-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNT 512 (979)
Q Consensus 446 ~l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~ 512 (979)
.+ .+++++.+|++|.|.+|.+..+|.++..+++|+.|+++.+. ...+|.- +..++.+..+..++|
T Consensus 82 ~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNN 147 (1081)
T ss_pred hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcc
Confidence 88 47889999999999999999999999999999999999954 6667765 788888888888877
No 15
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.47 E-value=3.1e-12 Score=160.83 Aligned_cols=297 Identities=12% Similarity=0.142 Sum_probs=188.5
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc-CCCHHHHHHH
Q 002024 3 IITSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH-NLSIVKIQGE 81 (979)
Q Consensus 3 ~~~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~ 81 (979)
+.+|.....++-|.+.++.+.+ ....+++.|+||+|.||||++.+++... +.++|+++.. ..++..+...
T Consensus 7 ~~~p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~~------~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 7 LSRPVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAGK------NNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred cCCCCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHhC------CCeEEEecCcccCCHHHHHHH
Confidence 4577788999999998888864 3456899999999999999999998532 2588999864 4566667677
Q ss_pred HHHHhCCcccc--------------cchHHHHHHHHHHHhc-CCeEEEEEcCCCCccc--hhhhcCCCC-CCCCCcEEEE
Q 002024 82 IAAVLGLTICG--------------IEESARAGYLWERIKM-EKRILVILDDVWERID--LQKVGIPLG-EDHEGCNILL 143 (979)
Q Consensus 82 i~~~l~~~~~~--------------~~~~~~~~~~~~~l~~-~~~~LlvlDd~~~~~~--~~~l~~~~~-~~~~~~~iii 143 (979)
++..++....+ .+.......+...+.. +.+++|||||++...+ .......+. ....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 76666421111 0111223334444443 6789999999976532 122222222 2345678889
Q ss_pred EcCChhhh--hcc-CCcceEEcC----CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCC
Q 002024 144 TSRSQGVC--NQM-DAQKIFIVR----TLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRN 216 (979)
Q Consensus 144 Ttr~~~~~--~~~-~~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~ 216 (979)
|||...-. ..+ ......++. +|+.+|+.++|....+... ..+.+..+++.|+|+|+++..++..+....
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~ 233 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQNN 233 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 99974211 111 122355666 9999999999988776332 234588999999999999999887775432
Q ss_pred ChhHHHHHHHHHhhcCCCccCCchhhhhhhhh-hhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeeccccc
Q 002024 217 NKYVWIDAAQQLKKSTPTNIEGMHKDVISSLE-LSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVET 295 (979)
Q Consensus 217 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~-~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~ 295 (979)
. . .......+.. .....+...+. -.|+.||++ .+.++...|+++ .++.. +...-.+
T Consensus 234 ~-~-~~~~~~~~~~-------~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~-l~~~l~~--------- 290 (903)
T PRK04841 234 S-S-LHDSARRLAG-------INASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDA-LIVRVTG--------- 290 (903)
T ss_pred C-c-hhhhhHhhcC-------CCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHH-HHHHHcC---------
Confidence 1 0 0111111100 00122344333 347899876 999999999997 44433 3221111
Q ss_pred HHHHHHHHHHHHHHhhhceeEE-e-C-CcceEEechhHHHHHHHHhh
Q 002024 296 LEEARVRTHAIVSTLISSFLLI-A-G-DEGYVTMHDVVRDVALVISS 339 (979)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~~l~~-~-~-~~~~~~mh~l~~~~~~~~~~ 339 (979)
..+....+++|.+.+++. . + ...+|+.|+++++++.....
T Consensus 291 ----~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 ----EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred ----CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 112245688999999754 2 2 33589999999999988763
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.45 E-value=3.7e-15 Score=133.25 Aligned_cols=161 Identities=27% Similarity=0.398 Sum_probs=81.7
Q ss_pred cCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC-ccccCCcCC
Q 002024 378 VPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL-SVIGELSNL 456 (979)
Q Consensus 378 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l-~~i~~L~~L 456 (979)
++.+.++++++.|.|++|.+..+|+. +..+++|++|+++++-...+|.+++.++.||.|++.-|++..+ ..|+.++-|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 33444445555555555555555554 3455555555555532225555555555555555555544444 345555555
Q ss_pred cEEEcccCcCc--ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccc
Q 002024 457 EILSLCRSSIK--EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLT 534 (979)
Q Consensus 457 ~~L~Ls~~~l~--~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~ 534 (979)
++||+++|++. .+|..|..+..|+.|+++++ ..+-+|++ +++|++||.|.+..+... ....+++.++.|+
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~d-vg~lt~lqil~lrdndll------~lpkeig~lt~lr 176 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPD-VGKLTNLQILSLRDNDLL------SLPKEIGDLTRLR 176 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChh-hhhhcceeEEeeccCchh------hCcHHHHHHHHHH
Confidence 55555555443 44555555555555555553 24445554 555555555555444321 2234455555555
Q ss_pred eecccccCCcCCC
Q 002024 535 NLMFHFPQNSILP 547 (979)
Q Consensus 535 ~L~l~~~~~~~~~ 547 (979)
+|.+-++..+.+|
T Consensus 177 elhiqgnrl~vlp 189 (264)
T KOG0617|consen 177 ELHIQGNRLTVLP 189 (264)
T ss_pred HHhcccceeeecC
Confidence 5555555544444
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=8.4e-15 Score=130.96 Aligned_cols=160 Identities=23% Similarity=0.290 Sum_probs=140.7
Q ss_pred CccccCCCCCcCCccEEEccCCcccccCCc-CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccC
Q 002024 352 GLLEWPIRDTFEDLTGISLMSNYIHEVPAM-LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSF 430 (979)
Q Consensus 352 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~ 430 (979)
.+.+.+..-.+..+++|-+++|.++.+|+. .++.+|++|++++|.+.++|.. ++.+++||.|++.-+.-..+|..|+.
T Consensus 22 sf~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 22 SFEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred cHhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCccccCC
Confidence 355566666778899999999999988854 4899999999999999999987 78999999999998444489999999
Q ss_pred CcCCCEEEeCCCCCCCC---ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEE
Q 002024 431 LVDLRTLRLEDCYLGDL---SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEF 507 (979)
Q Consensus 431 l~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L 507 (979)
++.|++|||.+|++.+- ..|..++.|+.|.++.|+++.+|..+++|++|+.|.+.++. +-++|.+ ++.|+.|++|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHH
Confidence 99999999999987554 45788999999999999999999999999999999999965 6678998 8999999999
Q ss_pred EcccCcc
Q 002024 508 YMWNTFK 514 (979)
Q Consensus 508 ~l~~~~~ 514 (979)
.+.|+..
T Consensus 179 hiqgnrl 185 (264)
T KOG0617|consen 179 HIQGNRL 185 (264)
T ss_pred hccccee
Confidence 9998854
No 18
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.33 E-value=3.9e-10 Score=126.73 Aligned_cols=289 Identities=15% Similarity=0.071 Sum_probs=168.1
Q ss_pred CCCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.+..|+||++++++|...+. +...+.+.|+|++|+|||++++.++++.........++++++....+...++..++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 46779999999999998874 33446688999999999999999999886544334577888887778889999999
Q ss_pred HHhCC-ccc--ccchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc------chhhhcCCCCCCCCC--cEEEEEcCChhhh
Q 002024 84 AVLGL-TIC--GIEESARAGYLWERIK-MEKRILVILDDVWERI------DLQKVGIPLGEDHEG--CNILLTSRSQGVC 151 (979)
Q Consensus 84 ~~l~~-~~~--~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~------~~~~l~~~~~~~~~~--~~iiiTtr~~~~~ 151 (979)
+++.. +.+ +.+.......+.+.+. .+++.+||||+++... .+..+... .....+ ..+|.++....+.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~-~~~~~~~~v~vI~i~~~~~~~ 186 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRA-HEEYPGARIGVIGISSDLTFL 186 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHh-hhccCCCeEEEEEEECCcchh
Confidence 99865 222 2223344555666655 3567899999998743 12222221 112223 2355555544332
Q ss_pred hcc-------CCcceEEcCCCCHHHHHHHHHHHhCCCC-CCccchHHHHHHHHHc----CCCchHHHHHHHHH--h---c
Q 002024 152 NQM-------DAQKIFIVRTLLEEESWILFREAAGTVV-ENSDLNSIAREVAAKC----SGLPIAILTVGRAL--K---N 214 (979)
Q Consensus 152 ~~~-------~~~~~~~l~~L~~~e~~~l~~~~~~~~~-~~~~~~~~~~~i~~~~----~g~Plal~~~~~~l--~---~ 214 (979)
... .....+.+++++.++..+++..++.... +..-.++++..+++.+ |..+.|+..+-... . +
T Consensus 187 ~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 187 YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG 266 (394)
T ss_pred hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC
Confidence 211 1235789999999999999988763211 1112233445555544 44667766653321 1 1
Q ss_pred CC--ChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHH-HccCC-CCccccHHHHHHhh--ee--
Q 002024 215 RN--NKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLF-CCLFP-EDYNIKIEVLMRYG--MG-- 286 (979)
Q Consensus 215 ~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~-~~~fp-~~~~~~~~~l~~~w--~~-- 286 (979)
.. ..+.+..+.+++. .....-.+..||.+ .+..+.- +.... +...+...++.... ++
T Consensus 267 ~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~ 331 (394)
T PRK00411 267 SRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEE 331 (394)
T ss_pred CCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 11 1244444444331 12234467788764 3333332 22222 11235555554321 11
Q ss_pred eeeecccccHHHHHHHHHHHHHHhhhceeEEe
Q 002024 287 LRWFKDVETLEEARVRTHAIVSTLISSFLLIA 318 (979)
Q Consensus 287 ~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 318 (979)
.|. . .-...++.+++..|.+.|++..
T Consensus 332 ~~~-~-----~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 332 LGY-E-----PRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred cCC-C-----cCcHHHHHHHHHHHHhcCCeEE
Confidence 111 0 0123556778899999998875
No 19
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=3.8e-12 Score=132.36 Aligned_cols=194 Identities=20% Similarity=0.259 Sum_probs=105.9
Q ss_pred chhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH---------HH
Q 002024 12 FESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG---------EI 82 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~---------~i 82 (979)
|+||++++++|.+.+..+..+.+.|+|+.|+|||+|++.+.+...... ..++|+............. .+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~--~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG--YKVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E--ECCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC--CcEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 799999999999999876668999999999999999999999875321 1344444433322211111 11
Q ss_pred HHHhCCccc-----------ccchHHHHHHHHHHHhc-CCeEEEEEcCCCCcc-c----------hhhhcCCCCCCCCCc
Q 002024 83 AAVLGLTIC-----------GIEESARAGYLWERIKM-EKRILVILDDVWERI-D----------LQKVGIPLGEDHEGC 139 (979)
Q Consensus 83 ~~~l~~~~~-----------~~~~~~~~~~~~~~l~~-~~~~LlvlDd~~~~~-~----------~~~l~~~~~~~~~~~ 139 (979)
.+.++.... ..........+.+.+.. +++++||+||++... . +..+..... .....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCCc
Confidence 222211111 01123344555555553 456999999997765 1 111111111 23344
Q ss_pred EEEEEcCChhhhhc--------cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 140 NILLTSRSQGVCNQ--------MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 140 ~iiiTtr~~~~~~~--------~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
.+|++.-...+... ......+.+++++.+++++++.+.+.....-+..++..++|++.+||+|..|..+
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~~ 234 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQEL 234 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhcC
Confidence 45555444333321 2233559999999999999999987544111224556899999999999988753
No 20
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.29 E-value=2.7e-10 Score=128.35 Aligned_cols=298 Identities=14% Similarity=0.184 Sum_probs=194.6
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEI 82 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i 82 (979)
.+|.++...+-|.+.+..+.+ ..+.|.+.|..|+|.|||||+.++++.. ..-..|.|++++.. .++..+.+.+
T Consensus 13 ~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~---~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 13 VRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELA---ADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred CCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhc---CcccceeEeecCCccCCHHHHHHHH
Confidence 456677788888887777665 4567999999999999999999998833 34567899998664 6788888888
Q ss_pred HHHhCCcccccchHH--------------HHHHHHHHHhc-CCeEEEEEcCCCCccc---hhhhcCCCCCCCCCcEEEEE
Q 002024 83 AAVLGLTICGIEESA--------------RAGYLWERIKM-EKRILVILDDVWERID---LQKVGIPLGEDHEGCNILLT 144 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~--------------~~~~~~~~l~~-~~~~LlvlDd~~~~~~---~~~l~~~~~~~~~~~~iiiT 144 (979)
+..++.-.++..+.. ....+...+.. .++..+|+||..-..+ ...+...+.....+..+|+|
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~ 166 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVT 166 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEE
Confidence 888875433322211 12333333332 4678999999764422 22233333345678899999
Q ss_pred cCChhhhhc--cC-CcceEEcC----CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCC
Q 002024 145 SRSQGVCNQ--MD-AQKIFIVR----TLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNN 217 (979)
Q Consensus 145 tr~~~~~~~--~~-~~~~~~l~----~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~ 217 (979)
||+.--... ++ ....+++. .|+.+|+.++|....+..-+. ..+..+.+...|.+-|+..++=.+++..+
T Consensus 167 SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld~----~~~~~L~~~teGW~~al~L~aLa~~~~~~ 242 (894)
T COG2909 167 SRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLDA----ADLKALYDRTEGWAAALQLIALALRNNTS 242 (894)
T ss_pred eccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCCh----HHHHHHHhhcccHHHHHHHHHHHccCCCc
Confidence 998633211 11 12344443 589999999999988644333 34888999999999999999888884433
Q ss_pred hhHHHHHHHHHhhcCCCccCCchhhhhh-hhhhhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeecccccH
Q 002024 218 KYVWIDAAQQLKKSTPTNIEGMHKDVIS-SLELSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETL 296 (979)
Q Consensus 218 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~ 296 (979)
.+.-... +.+.++-+.. -.+-.++.||++ .+.++.-+|+++. + -.+|++.-.+.
T Consensus 243 ~~q~~~~-----------LsG~~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f-~~eL~~~Ltg~--------- 297 (894)
T COG2909 243 AEQSLRG-----------LSGAASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR---F-NDELCNALTGE--------- 297 (894)
T ss_pred HHHHhhh-----------ccchHHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH---h-hHHHHHHHhcC---------
Confidence 1221111 1111111111 233467889886 9999999999883 1 23344332221
Q ss_pred HHHHHHHHHHHHHhhhceeEE-e--CCcceEEechhHHHHHHHHhhc
Q 002024 297 EEARVRTHAIVSTLISSFLLI-A--GDEGYVTMHDVVRDVALVISSK 340 (979)
Q Consensus 297 ~~~~~~~~~~l~~L~~~~l~~-~--~~~~~~~mh~l~~~~~~~~~~~ 340 (979)
++....+++|.++++.- . ++..+|+.|.+..+|.+.....
T Consensus 298 ----~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 298 ----ENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ----CcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 22334589999999543 2 5677999999999998877553
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.26 E-value=3.7e-11 Score=140.01 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=43.3
Q ss_pred cccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccC
Q 002024 605 KRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLP 684 (979)
Q Consensus 605 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 684 (979)
.+|+.|+++++.. .. ++.. .++|+.|+++++ .++.++. .+.+|+.|.+.++. ++.++. .
T Consensus 382 ~~L~~LdLs~N~L-t~-LP~l----~s~L~~LdLS~N-~LssIP~---------l~~~L~~L~Ls~Nq-Lt~LP~----s 440 (788)
T PRK15387 382 SGLKELIVSGNRL-TS-LPVL----PSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRNQ-LTRLPE----S 440 (788)
T ss_pred cccceEEecCCcc-cC-CCCc----ccCCCEEEccCC-cCCCCCc---------chhhhhhhhhccCc-ccccCh----H
Confidence 4566666655432 22 2221 357888888887 4544431 12467778886533 333321 1
Q ss_pred CCCCCCccEEeeeccCC
Q 002024 685 AGSFNKLKRLDVKWCQN 701 (979)
Q Consensus 685 ~~~~~~L~~L~l~~c~~ 701 (979)
...+++|+.|++++++-
T Consensus 441 l~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 441 LIHLSSETTVNLEGNPL 457 (788)
T ss_pred HhhccCCCeEECCCCCC
Confidence 24578889999988763
No 22
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.26 E-value=3.3e-14 Score=145.67 Aligned_cols=302 Identities=19% Similarity=0.253 Sum_probs=140.1
Q ss_pred cccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccC
Q 002024 605 KRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLP 684 (979)
Q Consensus 605 ~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 684 (979)
.-|+.|.++++....+.........+|++++|.+.+|.+++... .......+++|++|.+..|..+++... ...
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s----~~sla~~C~~l~~l~L~~c~~iT~~~L--k~l 211 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSS----LLSLARYCRKLRHLNLHSCSSITDVSL--KYL 211 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHH----HHHHHHhcchhhhhhhcccchhHHHHH--HHH
Confidence 34667777777655544333333557777777777776443321 001223456666777666666655322 111
Q ss_pred CCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEeccccccccc-
Q 002024 685 AGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTH- 763 (979)
Q Consensus 685 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~- 763 (979)
...+++|++|.+++|+....--....++.+..|+.+...+|..++.-. +.--....+-+.++++.+|..+++
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~-------l~~~~~~~~~i~~lnl~~c~~lTD~ 284 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEA-------LLKAAAYCLEILKLNLQHCNQLTDE 284 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHH-------HHHHhccChHhhccchhhhccccch
Confidence 235667777777777666552222223445555555555554432100 000011223445555555544444
Q ss_pred -ccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccE
Q 002024 764 -IWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTT 842 (979)
Q Consensus 764 -i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 842 (979)
+|... ..+..|+.|..++|..+++.+. ....++..+|+.|.+.+|..+.+. ....-..+++.|+.
T Consensus 285 ~~~~i~---~~c~~lq~l~~s~~t~~~d~~l-~aLg~~~~~L~~l~l~~c~~fsd~----------~ft~l~rn~~~Le~ 350 (483)
T KOG4341|consen 285 DLWLIA---CGCHALQVLCYSSCTDITDEVL-WALGQHCHNLQVLELSGCQQFSDR----------GFTMLGRNCPHLER 350 (483)
T ss_pred HHHHHh---hhhhHhhhhcccCCCCCchHHH-HHHhcCCCceEEEeccccchhhhh----------hhhhhhcCChhhhh
Confidence 11111 1355566666666665554332 333344455555555555544332 11111234555555
Q ss_pred EEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCccccccccCCceee
Q 002024 843 INIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQFLIE 922 (979)
Q Consensus 843 L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 922 (979)
|++.+|..+++-...+...+++.|++|.++.|..++.. +........+....|..|++++||.+++--. .+...
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~-----gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~~ 424 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDE-----GIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLSI 424 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhhh-----hhhhhhhccccccccceeeecCCCCchHHHH-HHHhh
Confidence 55555554444322222344555555555555444322 0011111122344555555555554443221 12223
Q ss_pred ccccceeeeccCCCcee
Q 002024 923 FPALEMLTIAECPKIKT 939 (979)
Q Consensus 923 ~~~L~~L~i~~C~~L~~ 939 (979)
+++|+.+++.+|..+++
T Consensus 425 c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 425 CRNLERIELIDCQDVTK 441 (483)
T ss_pred Ccccceeeeechhhhhh
Confidence 45555555555544443
No 23
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.26 E-value=6.1e-12 Score=149.94 Aligned_cols=331 Identities=25% Similarity=0.322 Sum_probs=185.0
Q ss_pred ccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCC--CCCCcc--ccC
Q 002024 377 EVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCY--LGDLSV--IGE 452 (979)
Q Consensus 377 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~--l~~l~~--i~~ 452 (979)
..|...+....|...+.+|.+..++.. ...+ +|++|-+.++. +..++. |..
T Consensus 515 ~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~-----------------------~L~tLll~~n~~~l~~is~~ff~~ 569 (889)
T KOG4658|consen 515 EIPQVKSWNSVRRMSLMNNKIEHIAGS--SENP-----------------------KLRTLLLQRNSDWLLEISGEFFRS 569 (889)
T ss_pred ccccccchhheeEEEEeccchhhccCC--CCCC-----------------------ccceEEEeecchhhhhcCHHHHhh
Confidence 355555566667777766666655543 1222 35555554443 333322 556
Q ss_pred CcCCcEEEcccC-cCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhcccccc
Q 002024 453 LSNLEILSLCRS-SIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALT 531 (979)
Q Consensus 453 L~~L~~L~Ls~~-~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~ 531 (979)
++.|++|||++| .+.++|..|+.|-+||+|++++ +.+..+|.+ +.+|.+|.+|++..+...... ......+.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~-l~~Lk~L~~Lnl~~~~~l~~~-----~~i~~~L~ 642 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSG-LGNLKKLIYLNLEVTGRLESI-----PGILLELQ 642 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchH-HHHHHhhheeccccccccccc-----cchhhhcc
Confidence 666677777766 6789999999999999999999 568899999 899999999999876542111 24455688
Q ss_pred ccceecccccCCcCC----CCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhccc
Q 002024 532 RLTNLMFHFPQNSIL----PSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRS 607 (979)
Q Consensus 532 ~L~~L~l~~~~~~~~----~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 607 (979)
+||.|.+........ .....+++|+.+.+...
T Consensus 643 ~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~-------------------------------------------- 678 (889)
T KOG4658|consen 643 SLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS-------------------------------------------- 678 (889)
T ss_pred cccEEEeeccccccchhhHHhhhcccchhhheeecc--------------------------------------------
Confidence 888888876541111 11123333333332110
Q ss_pred ceeecccccCccccccccccCCccccc----EEEEeccCCceEEeecccccCCcccccccchhccccCccceeec--ccC
Q 002024 608 EFLFLHEFIGVQDIDGDLISGGFTELK----CLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEIC--HGQ 681 (979)
Q Consensus 608 ~~L~L~~~~~~~~~~~~~~~~~l~~L~----~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~ 681 (979)
+. .....+ ..++.|. .+.+.+|...+.. .....+++|+.|.+.+|...+... ..
T Consensus 679 --------s~--~~~e~l--~~~~~L~~~~~~l~~~~~~~~~~~-------~~~~~l~~L~~L~i~~~~~~e~~~~~~~- 738 (889)
T KOG4658|consen 679 --------SV--LLLEDL--LGMTRLRSLLQSLSIEGCSKRTLI-------SSLGSLGNLEELSILDCGISEIVIEWEE- 738 (889)
T ss_pred --------hh--HhHhhh--hhhHHHHHHhHhhhhcccccceee-------cccccccCcceEEEEcCCCchhhccccc-
Confidence 00 000000 0112222 2222223222111 245567788888888887653211 00
Q ss_pred ccCCC-CCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEecccccc
Q 002024 682 VLPAG-SFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPE 760 (979)
Q Consensus 682 ~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 760 (979)
..... .|+++..+.+.+|..+....+ ....|+|+.|.+..|+.++.+.+. ...+..++.+.+
T Consensus 739 ~~~~~~~f~~l~~~~~~~~~~~r~l~~---~~f~~~L~~l~l~~~~~~e~~i~~---------~k~~~~l~~~i~----- 801 (889)
T KOG4658|consen 739 SLIVLLCFPNLSKVSILNCHMLRDLTW---LLFAPHLTSLSLVSCRLLEDIIPK---------LKALLELKELIL----- 801 (889)
T ss_pred ccchhhhHHHHHHHHhhccccccccch---hhccCcccEEEEecccccccCCCH---------HHHhhhcccEEe-----
Confidence 01111 277888888888877776653 334688888888888888776433 122333333221
Q ss_pred cccccccCcccccccCccEE-EeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCC
Q 002024 761 MTHIWKGDSRLISLCSLKKL-CLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQN 839 (979)
Q Consensus 761 l~~i~~~~~~~~~~~~L~~L-~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~ 839 (979)
.+.+++.+ .+.+-+.+..+...+ +. .+.|+.+.+..|+++..+ | .
T Consensus 802 ------------~f~~~~~l~~~~~l~~l~~i~~~~--l~-~~~l~~~~ve~~p~l~~~------------P-------~ 847 (889)
T KOG4658|consen 802 ------------PFNKLEGLRMLCSLGGLPQLYWLP--LS-FLKLEELIVEECPKLGKL------------P-------L 847 (889)
T ss_pred ------------cccccccceeeecCCCCceeEecc--cC-ccchhheehhcCcccccC------------c-------c
Confidence 12222222 222222222221101 11 233899999999999877 3 4
Q ss_pred ccEEEEecC-CCceEe
Q 002024 840 LTTINIQSC-SKLVNL 854 (979)
Q Consensus 840 L~~L~l~~c-~~l~~~ 854 (979)
+.++.+.+| ..+...
T Consensus 848 ~~~~~i~~~~~~~~~~ 863 (889)
T KOG4658|consen 848 LSTLTIVGCEEKLKEY 863 (889)
T ss_pred ccccceeccccceeec
Confidence 667778886 555554
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.25 E-value=4.9e-11 Score=139.05 Aligned_cols=254 Identities=19% Similarity=0.140 Sum_probs=143.2
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLG 445 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~ 445 (979)
..|+++++.++.+|... .++|+.|.+.+|.+..+|. ..++|++|+|+++....+|.. .++|+.|++.+|.++
T Consensus 204 ~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 204 AVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCchh
Confidence 45667777777666533 2467777777777776663 246677777777332255542 346677777777666
Q ss_pred CCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchh
Q 002024 446 DLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVV 525 (979)
Q Consensus 446 ~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~ 525 (979)
.++.+ +.+|+.|++++|.+..+|.. +++|+.|++++| .+..+|.. ..+|+.|++++|.... +.
T Consensus 276 ~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l----p~~L~~L~Ls~N~L~~-------LP 338 (788)
T PRK15387 276 HLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPAL----PSELCKLWAYNNQLTS-------LP 338 (788)
T ss_pred hhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCC-ccccCCCC----cccccccccccCcccc-------cc
Confidence 55432 24566777777777766642 356777777765 34555531 1245555665553310 00
Q ss_pred ccccccccceecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhc
Q 002024 526 ELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLK 605 (979)
Q Consensus 526 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 605 (979)
. ...+|+.|+++++....+|.. .+
T Consensus 339 ~--lp~~Lq~LdLS~N~Ls~LP~l------------------------------------------------------p~ 362 (788)
T PRK15387 339 T--LPSGLQELSVSDNQLASLPTL------------------------------------------------------PS 362 (788)
T ss_pred c--cccccceEecCCCccCCCCCC------------------------------------------------------Cc
Confidence 0 113566666666554433321 12
Q ss_pred ccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCC
Q 002024 606 RSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPA 685 (979)
Q Consensus 606 ~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 685 (979)
+|+.|++.++. +.. ++.. .++|+.|+++++ .++.++. ..++|+.|+++++. +..+ +
T Consensus 363 ~L~~L~Ls~N~-L~~-LP~l----~~~L~~LdLs~N-~Lt~LP~---------l~s~L~~LdLS~N~-LssI------P- 418 (788)
T PRK15387 363 ELYKLWAYNNR-LTS-LPAL----PSGLKELIVSGN-RLTSLPV---------LPSELKELMVSGNR-LTSL------P- 418 (788)
T ss_pred ccceehhhccc-ccc-Cccc----ccccceEEecCC-cccCCCC---------cccCCCEEEccCCc-CCCC------C-
Confidence 33334333221 111 1221 357888999887 4544431 13578888887754 3332 1
Q ss_pred CCCCCccEEeeeccCCcccccchhHHHhhccCceEeeecccc
Q 002024 686 GSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCAS 727 (979)
Q Consensus 686 ~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~ 727 (979)
..+.+|+.|+++++. ++.+|. .+..+++|+.|++++++-
T Consensus 419 ~l~~~L~~L~Ls~Nq-Lt~LP~--sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 419 MLPSGLLSLSVYRNQ-LTRLPE--SLIHLSSETTVNLEGNPL 457 (788)
T ss_pred cchhhhhhhhhccCc-ccccCh--HHhhccCCCeEECCCCCC
Confidence 124578888888864 566643 266788999999988763
No 25
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.24 E-value=2.6e-09 Score=118.83 Aligned_cols=292 Identities=16% Similarity=0.141 Sum_probs=166.4
Q ss_pred CCCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC---C-CeEEEEEeccCCCHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR---Y-DTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~---f-~~~~~~~~~~~~~~~~~~ 79 (979)
.++.|+||++++++|...+. +...+.+.|+|++|+|||++++.+++....... . -.++|+++....+...+.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 46689999999999998875 334467899999999999999999987653211 1 246788888777888999
Q ss_pred HHHHHHh---CCccc--ccchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc-c----hhhhcCCC-CCCC--CCcEEEEEc
Q 002024 80 GEIAAVL---GLTIC--GIEESARAGYLWERIK-MEKRILVILDDVWERI-D----LQKVGIPL-GEDH--EGCNILLTS 145 (979)
Q Consensus 80 ~~i~~~l---~~~~~--~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~-~----~~~l~~~~-~~~~--~~~~iiiTt 145 (979)
..|++++ +...+ +.+.......+.+.+. .+++.+||||+++... . +..+.... .... ....+|.++
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 9999998 33322 2223334455555554 3567899999998762 1 11221110 1111 233445555
Q ss_pred CChhhhhccC-------CcceEEcCCCCHHHHHHHHHHHhCC-CCC---CccchHHHHHHHHHcCCCchHHHHHHHH-H-
Q 002024 146 RSQGVCNQMD-------AQKIFIVRTLLEEESWILFREAAGT-VVE---NSDLNSIAREVAAKCSGLPIAILTVGRA-L- 212 (979)
Q Consensus 146 r~~~~~~~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~-~~~---~~~~~~~~~~i~~~~~g~Plal~~~~~~-l- 212 (979)
........+. ....+.+++++.+|..+++..++.. ..+ .++..+.+..++....|-|..+..+... .
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4433221111 1357899999999999999888741 111 1222234555666777887544332211 1
Q ss_pred -h---cC--CChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHc-cCC-CCccccHHHHHHhh
Q 002024 213 -K---NR--NNKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCC-LFP-EDYNIKIEVLMRYG 284 (979)
Q Consensus 213 -~---~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~-~fp-~~~~~~~~~l~~~w 284 (979)
. +. -..+....+.+.+. .....-....||.+ .+.++..++ +.. ++..+...++...+
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y 317 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVY 317 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 1 11 11233333333321 12233455677664 444444332 211 33346666655532
Q ss_pred e--eeeeecccccHHHHHHHHHHHHHHhhhceeEEe
Q 002024 285 M--GLRWFKDVETLEEARVRTHAIVSTLISSFLLIA 318 (979)
Q Consensus 285 ~--~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 318 (979)
- ++.+ . ...-...++..++..|...|+++.
T Consensus 318 ~~~~~~~-~---~~~~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 318 KEVCEDI-G---VDPLTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHHhc-C---CCCCcHHHHHHHHHHHHhcCCeEE
Confidence 1 1100 0 011224667778899999999876
No 26
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.22 E-value=2.2e-13 Score=139.71 Aligned_cols=297 Identities=19% Similarity=0.252 Sum_probs=205.0
Q ss_pred cccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHH
Q 002024 632 ELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLL 711 (979)
Q Consensus 632 ~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~ 711 (979)
-|++|.++||..+..-.-. ......|++++|.+.+|..+++... .--...+++|+.|.+..|+.+++.......
T Consensus 139 ~lk~LSlrG~r~v~~sslr----t~~~~CpnIehL~l~gc~~iTd~s~--~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLR----TFASNCPNIEHLALYGCKKITDSSL--LSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred ccccccccccccCCcchhh----HHhhhCCchhhhhhhcceeccHHHH--HHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 5889999998654332111 1234678999999999998776421 011246899999999999999988766667
Q ss_pred HhhccCceEeeeccccccceecccCCCCccccccccccccEEeccccccccc--ccccCcccccccCccEEEeccCCCcc
Q 002024 712 RRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTH--IWKGDSRLISLCSLKKLCLWACDNLT 789 (979)
Q Consensus 712 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--i~~~~~~~~~~~~L~~L~l~~C~~l~ 789 (979)
..+++|+++.++.|+.+.. ++.+. -......++.+.+.+|..+.. +... ...++.+..+++..|..++
T Consensus 213 ~gC~kL~~lNlSwc~qi~~----~gv~~---~~rG~~~l~~~~~kGC~e~~le~l~~~---~~~~~~i~~lnl~~c~~lT 282 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISG----NGVQA---LQRGCKELEKLSLKGCLELELEALLKA---AAYCLEILKLNLQHCNQLT 282 (483)
T ss_pred HhhhhHHHhhhccCchhhc----CcchH---HhccchhhhhhhhcccccccHHHHHHH---hccChHhhccchhhhcccc
Confidence 7899999999999998765 11111 122234466666667755433 1111 1245667778888998888
Q ss_pred cccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEE
Q 002024 790 KLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTL 869 (979)
Q Consensus 790 ~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 869 (979)
+.-. -..-..+..|+.|..++|.++.+.... .-..++.+|+.|.+.+|.++++..-.....+.+.|+.+
T Consensus 283 D~~~-~~i~~~c~~lq~l~~s~~t~~~d~~l~----------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 283 DEDL-WLIACGCHALQVLCYSSCTDITDEVLW----------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred chHH-HHHhhhhhHhhhhcccCCCCCchHHHH----------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 6511 112344688999999999887654221 12357799999999999999988655556778999999
Q ss_pred EEecccccceeeccccccCCCCccceeeccccccccccCcccccccc---CCceeeccccceeeeccCCCceeecCCCc-
Q 002024 870 RVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCS---GQFLIEFPALEMLTIAECPKIKTFGYGDQ- 945 (979)
Q Consensus 870 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~---~~~~~~~~~L~~L~i~~C~~L~~l~~~~~- 945 (979)
++..|..+..---. ...-.+|.|+.|.+++|..+++... .........|+.+.+.+||.++.=-..++
T Consensus 352 ~~e~~~~~~d~tL~--------sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 352 DLEECGLITDGTLA--------SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred cccccceehhhhHh--------hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 99999765533100 0012699999999999998887521 11223357899999999999977333334
Q ss_pred cccccceEEcccCCcccC
Q 002024 946 VTAKLNRVELQEGNRWTG 963 (979)
Q Consensus 946 ~~~~l~~~~~~~~~~w~~ 963 (979)
.++.||+|+.++|..-..
T Consensus 424 ~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 424 ICRNLERIELIDCQDVTK 441 (483)
T ss_pred hCcccceeeeechhhhhh
Confidence 578999999999987655
No 27
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.21 E-value=6.1e-11 Score=139.27 Aligned_cols=138 Identities=18% Similarity=0.253 Sum_probs=93.6
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
+...|+++++.++.+|... .++++.|++++|.+..+|...+ ++|++|+++++....+|..+. .+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 4567888888888777533 3578888888888888877643 478888888833336776553 468888888888
Q ss_pred CCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 444 LGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 444 l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
+..++.- -..+|++|++++|.+..+|..+. ++|++|++++| .+..+|.. +. .+|+.|++++|..
T Consensus 253 L~~LP~~-l~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp--~sL~~L~Ls~N~L 316 (754)
T PRK15370 253 ITELPER-LPSALQSLDLFHNKISCLPENLP--EELRYLSVYDN-SIRTLPAH-LP--SGITHLNVQSNSL 316 (754)
T ss_pred cCcCChh-HhCCCCEEECcCCccCccccccC--CCCcEEECCCC-ccccCccc-ch--hhHHHHHhcCCcc
Confidence 7776431 12478888888888887776554 47888888875 35566654 22 3566666666543
No 28
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.20 E-value=2.2e-09 Score=113.88 Aligned_cols=178 Identities=19% Similarity=0.194 Sum_probs=114.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHH----HHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLW----ERI 106 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~----~~l 106 (979)
..++.|+|++|+||||+++.+++..... .. .+.|+ +....+..+++..|+..++.+..+.........+. ...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~ 119 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQF 119 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999887522 11 12233 33345778899999999987655443322233332 333
Q ss_pred hcCCeEEEEEcCCCCcc--chhhhcCC--C-CCCCCCcEEEEEcCChhhhhcc----------CCcceEEcCCCCHHHHH
Q 002024 107 KMEKRILVILDDVWERI--DLQKVGIP--L-GEDHEGCNILLTSRSQGVCNQM----------DAQKIFIVRTLLEEESW 171 (979)
Q Consensus 107 ~~~~~~LlvlDd~~~~~--~~~~l~~~--~-~~~~~~~~iiiTtr~~~~~~~~----------~~~~~~~l~~L~~~e~~ 171 (979)
..+++.++|+||++... .++.+... + ........|++|.... +...+ +....+++++++.+|..
T Consensus 120 ~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~ 198 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETR 198 (269)
T ss_pred hCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHH
Confidence 36788999999998753 23333211 1 1112233445554432 22111 12356889999999999
Q ss_pred HHHHHHhCCCC---CCccchHHHHHHHHHcCCCchHHHHHHHHH
Q 002024 172 ILFREAAGTVV---ENSDLNSIAREVAAKCSGLPIAILTVGRAL 212 (979)
Q Consensus 172 ~l~~~~~~~~~---~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 212 (979)
+++...+.... ...-..+..+.|++.++|.|..|+.++..+
T Consensus 199 ~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 199 EYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99987764222 223345789999999999999999988766
No 29
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=2e-10 Score=135.02 Aligned_cols=178 Identities=20% Similarity=0.245 Sum_probs=133.0
Q ss_pred cCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCC
Q 002024 362 FEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLED 441 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~ 441 (979)
...++.|++++|.++.+|... .++|+.|++++|.+..+|..+ ..+|+.|+|+++....+|..+. .+|++|++++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLFH 271 (754)
T ss_pred ccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECcC
Confidence 357899999999999988543 368999999999999888754 3479999999944438887664 5899999999
Q ss_pred CCCCCCcc-ccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 442 CYLGDLSV-IGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 442 ~~l~~l~~-i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
|+++.++. +. .+|++|++++|.++.+|..+. .+|+.|++++|. +..+|.. + .++|+.|++++|.... .
T Consensus 272 N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~-Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-L-- 340 (754)
T PRK15370 272 NKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNS-LTALPET-L--PPGLKTLEAGENALTS-L-- 340 (754)
T ss_pred CccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCc-cccCCcc-c--cccceeccccCCcccc-C--
Confidence 99887753 32 589999999999999887554 478999999864 6667764 2 3688899998875431 1
Q ss_pred ccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEE
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAV 562 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~ 562 (979)
...+ .++|+.|+++.+....+|... .+.|+.|++..
T Consensus 341 ---P~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~ 376 (754)
T PRK15370 341 ---PASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSR 376 (754)
T ss_pred ---Chhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCC
Confidence 1122 268899999888877666533 25677777654
No 30
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=4.2e-10 Score=109.75 Aligned_cols=143 Identities=23% Similarity=0.281 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCC----CeEEEEEeccCCCH---HHHHHHHHHHhCCcccccchHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRY----DTVVMAVVSHNLSI---VKIQGEIAAVLGLTICGIEESARAGYLWE 104 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f----~~~~~~~~~~~~~~---~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 104 (979)
|++.|+|.+|+|||++++.+++........ ..++|+........ ..+...|............. ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 578999999999999999999988755443 35666666554332 24555555554432211111 2223
Q ss_pred HHhcCCeEEEEEcCCCCccc---------hhhhcCCCCCC--CCCcEEEEEcCChhh---hhccCCcceEEcCCCCHHHH
Q 002024 105 RIKMEKRILVILDDVWERID---------LQKVGIPLGED--HEGCNILLTSRSQGV---CNQMDAQKIFIVRTLLEEES 170 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~~~~---------~~~l~~~~~~~--~~~~~iiiTtr~~~~---~~~~~~~~~~~l~~L~~~e~ 170 (979)
.....+++++|+|++|+... +..+...+... .++.+++||+|.... .........+++++|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 33468899999999987643 11122222222 568999999998765 23344557899999999999
Q ss_pred HHHHHHHhC
Q 002024 171 WILFREAAG 179 (979)
Q Consensus 171 ~~l~~~~~~ 179 (979)
.++++++..
T Consensus 156 ~~~~~~~f~ 164 (166)
T PF05729_consen 156 KQYLRKYFS 164 (166)
T ss_pred HHHHHHHhh
Confidence 999988764
No 31
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.11 E-value=2.1e-09 Score=111.12 Aligned_cols=250 Identities=18% Similarity=0.135 Sum_probs=146.3
Q ss_pred ccCCCCCCchhHHHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 4 ITSSSKGIFESRKSIVK---QLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~---~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
+.|.....+||.++.+. -|..+++.+...-..+|||+|+||||||+.++.... .. |..++...+...-++
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~--~~-----f~~~sAv~~gvkdlr 90 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN--AA-----FEALSAVTSGVKDLR 90 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC--Cc-----eEEeccccccHHHHH
Confidence 45778889999999884 366777777777777999999999999999998775 22 333443333322233
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE--EcCChhhh---hc
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILL--TSRSQGVC---NQ 153 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iii--Ttr~~~~~---~~ 153 (979)
+++++ ..+....|++.+|++|+|+.- .+.+.+. + .-..|..++| ||.++.+. ..
T Consensus 91 ~i~e~----------------a~~~~~~gr~tiLflDEIHRfnK~QQD~lL-p--~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 91 EIIEE----------------ARKNRLLGRRTILFLDEIHRFNKAQQDALL-P--HVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred HHHHH----------------HHHHHhcCCceEEEEehhhhcChhhhhhhh-h--hhcCCeEEEEeccCCCCCeeecHHH
Confidence 33222 112233489999999999754 3333222 2 2345665554 77777554 22
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHhCCCCC-----Cc-cchHHHHHHHHHcCCC-chHHHHHHH--HHh-cCC--ChhHH
Q 002024 154 MDAQKIFIVRTLLEEESWILFREAAGTVVE-----NS-DLNSIAREVAAKCSGL-PIAILTVGR--ALK-NRN--NKYVW 221 (979)
Q Consensus 154 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~-----~~-~~~~~~~~i~~~~~g~-Plal~~~~~--~l~-~~~--~~~~~ 221 (979)
.+..+++++++|+.++..+++.+....... .. -.+++...+++.++|= -.+++.+-- .+. ... ..+..
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l 231 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELL 231 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHH
Confidence 245689999999999999999985422111 11 2345677888888884 344443322 222 111 11222
Q ss_pred HHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHccCCCCc--cccHHHHHH
Q 002024 222 IDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCCLFPEDY--NIKIEVLMR 282 (979)
Q Consensus 222 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp~~~--~~~~~~l~~ 282 (979)
++.+++-.. ..++..+.+.++.++|.-|..-= +. ...+++++-++..+- ..-.+++++
T Consensus 232 ~~~l~~~~~-~~Dk~gD~hYdliSA~hKSvRGS-D~-dAALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 232 EEILQRRSA-RFDKDGDAHYDLISALHKSVRGS-DP-DAALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred HHHHhhhhh-ccCCCcchHHHHHHHHHHhhccC-Cc-CHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 233222111 12333455678889999988865 22 334444444554332 233444444
No 32
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=1.6e-09 Score=117.45 Aligned_cols=262 Identities=15% Similarity=0.088 Sum_probs=144.2
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALN-----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~-----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
+.|+....|+||++.++.+...+. ....+.+.|+|++|+|||++|+.+++..... ..++........ ..
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~-----~~~~~~~~~~~~-~~ 92 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN-----IRITSGPALEKP-GD 92 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecccccCh-HH
Confidence 357788899999999999987774 2335678899999999999999999987522 112221111111 11
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhc---CC---------------CC-CCCC
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVG---IP---------------LG-EDHE 137 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~---~~---------------~~-~~~~ 137 (979)
+..+...+ +..-++++|+++.... .+.+. .. .. .-.+
T Consensus 93 l~~~l~~l----------------------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~ 150 (328)
T PRK00080 93 LAAILTNL----------------------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPP 150 (328)
T ss_pred HHHHHHhc----------------------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCC
Confidence 11222222 1233455555543210 00000 00 00 0012
Q ss_pred CcEEEEEcCChhhhhcc--CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcC
Q 002024 138 GCNILLTSRSQGVCNQM--DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNR 215 (979)
Q Consensus 138 ~~~iiiTtr~~~~~~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~ 215 (979)
..-|..|++...+...+ +....+++++++.++..+++.+.+.... ..-.++.+..|++.|+|.|..+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILG-VEIDEEGALEIARRSRGTPRIANRLLRRVR-- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHcCCCchHHHHHHHHHH--
Confidence 34455666654333221 1235689999999999999998886432 223446789999999999975555443222
Q ss_pred CChhHHHHHHHHHhhcCCCcc-CCchhhhhhhhhhhhccCChhhHHHHHH-HHccCCCCccccHHHHHHhheeeeeeccc
Q 002024 216 NNKYVWIDAAQQLKKSTPTNI-EGMHKDVISSLELSYNYLESEEAKKLFL-FCCLFPEDYNIKIEVLMRYGMGLRWFKDV 293 (979)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~s~~~L~~~~~~~~~~-~~~~fp~~~~~~~~~l~~~w~~~g~~~~~ 293 (979)
.|.... .. ..+ ...-......+...+..|+.. .+..+. ....|+++ ++....+.... +.
T Consensus 228 ----~~a~~~----~~--~~I~~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l-g~------ 288 (328)
T PRK00080 228 ----DFAQVK----GD--GVITKEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL-GE------ 288 (328)
T ss_pred ----HHHHHc----CC--CCCCHHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH-CC------
Confidence 111110 00 001 011133445566777788665 455554 67777765 56665554321 11
Q ss_pred ccHHHHHHHHHHHHH-HhhhceeEEeCC
Q 002024 294 ETLEEARVRTHAIVS-TLISSFLLIAGD 320 (979)
Q Consensus 294 ~~~~~~~~~~~~~l~-~L~~~~l~~~~~ 320 (979)
.. ....+.++ .|++.+|++...
T Consensus 289 -~~----~~~~~~~e~~Li~~~li~~~~ 311 (328)
T PRK00080 289 -ER----DTIEDVYEPYLIQQGFIQRTP 311 (328)
T ss_pred -Cc----chHHHHhhHHHHHcCCcccCC
Confidence 11 12222345 788899887533
No 33
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=7.2e-09 Score=111.92 Aligned_cols=277 Identities=16% Similarity=0.092 Sum_probs=142.4
Q ss_pred CCCchhHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALN-----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~-----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
...|+||++++++|..++. ....+.+.|+|++|+|||+||+.+++..... + ..+..........+... +
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l~~~-l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDLAAI-L 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhHHHH-H
Confidence 4579999999999998886 2334568899999999999999999887521 1 12221111112222211 1
Q ss_pred HHhCCcc----cccc--hHHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhhcc--C
Q 002024 84 AVLGLTI----CGIE--ESARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQM--D 155 (979)
Q Consensus 84 ~~l~~~~----~~~~--~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~--~ 155 (979)
..++... ++.. .......+...+ .+.+..+|+++..+...+. .. ..+..-|.+|++...+.... +
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~-~~~~~~~v~~~~~~~~~~~---~~---~~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAM-EDFRLDIVIGKGPSARSVR---LD---LPPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHH-hhhheeeeeccCcccccee---ec---CCCeEEEEecCCccccCHHHHhh
Confidence 2221110 0000 000111111111 1233334444433222211 11 12244555677764433211 1
Q ss_pred CcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCc
Q 002024 156 AQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQLKKSTPTN 235 (979)
Q Consensus 156 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 235 (979)
....+++++++.+|..+++.+.+.... ..-..+.+..|++.|+|.|..+..+...+. ... . ......-.
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~-~~~~~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a-~-~~~~~~it 218 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLN-VEIEPEAALEIARRSRGTPRIANRLLRRVR--------DFA-Q-VRGQKIIN 218 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHhCCCcchHHHHHHHHH--------HHH-H-HcCCCCcC
Confidence 235689999999999999998886332 223346788999999999977655444221 110 0 00000000
Q ss_pred cCCchhhhhhhhhhhhccCChhhHHHHHH-HHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHHHHH-Hhhhc
Q 002024 236 IEGMHKDVISSLELSYNYLESEEAKKLFL-FCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHAIVS-TLISS 313 (979)
Q Consensus 236 ~~~~~~~~~~~l~~s~~~L~~~~~~~~~~-~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~-~L~~~ 313 (979)
...-.+....+...|..++.. .+..+. ....++++ ++....+.... |. ........++ .|+++
T Consensus 219 -~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g~---------~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 219 -RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---GE---------DADTIEDVYEPYLLQI 283 (305)
T ss_pred -HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---CC---------CcchHHHhhhHHHHHc
Confidence 011122233356667778654 444444 55666644 45555554321 10 1122333456 69999
Q ss_pred eeEEeCCcceE
Q 002024 314 FLLIAGDEGYV 324 (979)
Q Consensus 314 ~l~~~~~~~~~ 324 (979)
+|++....+.+
T Consensus 284 ~li~~~~~g~~ 294 (305)
T TIGR00635 284 GFLQRTPRGRI 294 (305)
T ss_pred CCcccCCchhh
Confidence 99976444443
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=5.7e-11 Score=121.15 Aligned_cols=122 Identities=27% Similarity=0.336 Sum_probs=60.2
Q ss_pred CceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCC-CCCCCC--ccccCCcCCcEEEc
Q 002024 386 KLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLED-CYLGDL--SVIGELSNLEILSL 461 (979)
Q Consensus 386 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~-~~l~~l--~~i~~L~~L~~L~L 461 (979)
....+.|..|.+..+|+++|+.+++||.|||++ .++..-|++|..++.|-.|.+-+ |+|+++ ..|++|..|+-|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 344455555555555555555555555555555 44444455555555554444433 445555 23555555555555
Q ss_pred ccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCcEEE
Q 002024 462 CRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFY 508 (979)
Q Consensus 462 s~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~ 508 (979)
.-|++.-+ ...+..|++|..|.+.+ +.+..++...+..+..++++.
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHh
Confidence 55544433 23445555555555544 223444443344444444443
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.92 E-value=4e-08 Score=118.31 Aligned_cols=307 Identities=16% Similarity=0.211 Sum_probs=173.8
Q ss_pred CchhHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC-CCeEEEEEeccCCCHHH---HHHHHH
Q 002024 11 IFESRKSIVKQLLEALN---NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-YDTVVMAVVSHNLSIVK---IQGEIA 83 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~---~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~---~~~~i~ 83 (979)
+++||+.+++.|.+.+. .+...++.|.|.+|||||++++++......... |-...+-....+.+... ..+.++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 47999999999998886 455689999999999999999999998764311 11111111222222222 222222
Q ss_pred HHh-------------------CCc------------------c-----cccchHHHHH-----HHHHHHhcCCeEEEEE
Q 002024 84 AVL-------------------GLT------------------I-----CGIEESARAG-----YLWERIKMEKRILVIL 116 (979)
Q Consensus 84 ~~l-------------------~~~------------------~-----~~~~~~~~~~-----~~~~~l~~~~~~Llvl 116 (979)
.++ |.. . .+.....+.. .+.....+.++.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 222 110 0 0001111111 2222233567999999
Q ss_pred cCCCCc-cc----hhhhcCCCCC-CCCCcEEEE--EcCCh--hhhhccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCcc
Q 002024 117 DDVWER-ID----LQKVGIPLGE-DHEGCNILL--TSRSQ--GVCNQMDAQKIFIVRTLLEEESWILFREAAGTVVENSD 186 (979)
Q Consensus 117 Dd~~~~-~~----~~~l~~~~~~-~~~~~~iii--Ttr~~--~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~ 186 (979)
||++-. .. ++.++..... ......|.. |.+.. ...........+.+.||+..+...+.....+...+ .
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~--~ 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL--L 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc--c
Confidence 999432 21 2222211110 000112222 22222 12222234589999999999999999999875322 2
Q ss_pred chHHHHHHHHHcCCCchHHHHHHHHHhcC------CChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHH
Q 002024 187 LNSIAREVAAKCSGLPIAILTVGRALKNR------NNKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAK 260 (979)
Q Consensus 187 ~~~~~~~i~~~~~g~Plal~~~~~~l~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 260 (979)
.......|++++.|+|+.+..+-..+... .....|+.-..++.. .+..+.+.+.+..-.+.||.. .+
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~------~~~~~~vv~~l~~rl~kL~~~-t~ 311 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGI------LATTDAVVEFLAARLQKLPGT-TR 311 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCC------chhhHHHHHHHHHHHhcCCHH-HH
Confidence 23468899999999999999998877653 112444433333221 123344677788899999876 99
Q ss_pred HHHHHHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHHHHHHhhhceeEEe------CC-cc---eEEechhH
Q 002024 261 KLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHAIVSTLISSFLLIA------GD-EG---YVTMHDVV 330 (979)
Q Consensus 261 ~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~------~~-~~---~~~mh~l~ 330 (979)
+.+...|++... |+...+...+.. -...++....+.|....++.. .. .. +-..|+.+
T Consensus 312 ~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 999999998864 444455443321 112233333444544444421 11 11 22678888
Q ss_pred HHHHHHHhh
Q 002024 331 RDVALVISS 339 (979)
Q Consensus 331 ~~~~~~~~~ 339 (979)
++.+.....
T Consensus 379 qqaaY~~i~ 387 (849)
T COG3899 379 QQAAYNLIP 387 (849)
T ss_pred HHHHhccCc
Confidence 887765544
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.9e-09 Score=102.67 Aligned_cols=128 Identities=27% Similarity=0.263 Sum_probs=28.4
Q ss_pred CCcCCCCCceEEEccCCCCcccChhhhc-CCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCc-cc-cCCcC
Q 002024 379 PAMLECPKLQVLLLQENSPLVIPDKFFQ-GMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLS-VI-GELSN 455 (979)
Q Consensus 379 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~-~i-~~L~~ 455 (979)
+...++.+++.|+|.+|.+..+.. +. .+.+|++|+|+++....++ .+..+++|++|++++|.++.+. .+ ..+++
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S----TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred cccccccccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 333334444444444444444321 12 2344444444442221222 3444455555555555544442 22 23455
Q ss_pred CcEEEcccCcCcccc--hhhccCccccEEecCCCCCcccc--CcchhccCcCCcEEEc
Q 002024 456 LEILSLCRSSIKEIP--ETFCRLSHLWLLDLDHCRQLALI--PHGVISQLDKLEEFYM 509 (979)
Q Consensus 456 L~~L~Ls~~~l~~lp--~~i~~L~~L~~L~l~~c~~~~~~--p~~~l~~L~~L~~L~l 509 (979)
|++|++++|.+.++. ..+..+++|++|++.+|+....- -..++..+++|+.|+.
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 555555555444332 23444555555555554322110 1123455555555554
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.87 E-value=1.5e-10 Score=118.18 Aligned_cols=259 Identities=20% Similarity=0.163 Sum_probs=179.3
Q ss_pred CccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cC
Q 002024 352 GLLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PS 427 (979)
Q Consensus 352 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~ 427 (979)
++.++|. ........+.+..|.|+.+| .|..+++||.|+|++|.+..|-++.|+.++.|-.|-+.+ +....+| ..
T Consensus 57 GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 57 GLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred CcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 3445443 33456778999999999999 466999999999999999999999999999988888777 5555888 46
Q ss_pred ccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCcc-----c-------
Q 002024 428 LSFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLA-----L------- 492 (979)
Q Consensus 428 ~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~-----~------- 492 (979)
|+.+..|+-|.+.-|++..+ ..+..|++|..|.+..|.+..++. .|..+..++++.+..+..+. .
T Consensus 136 F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~ 215 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAM 215 (498)
T ss_pred hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhh
Confidence 89999999999999988777 678999999999999999998887 78899999999887654211 0
Q ss_pred cCcchhccCcCCcEEEcccCcc-------------------cc--ccccccchhccccccccceecccccCCcCCCCC--
Q 002024 493 IPHGVISQLDKLEEFYMWNTFK-------------------NW--DCETNAKVVELQALTRLTNLMFHFPQNSILPSH-- 549 (979)
Q Consensus 493 ~p~~~l~~L~~L~~L~l~~~~~-------------------~~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-- 549 (979)
.|.. .+......-..+.+... .. .........-+++|++|++|+++.+.++.+...
T Consensus 216 ~~ie-tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF 294 (498)
T KOG4237|consen 216 NPIE-TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF 294 (498)
T ss_pred chhh-cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence 1111 11111111111111000 00 000112234478999999999999988877655
Q ss_pred CCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCccccccccccCC
Q 002024 550 MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGG 629 (979)
Q Consensus 550 ~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 629 (979)
.....+++|.+..+.. ..+-..+...+++|+.|+|.++....-....+ +.
T Consensus 295 e~~a~l~eL~L~~N~l----------------------------~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF--~~ 344 (498)
T KOG4237|consen 295 EGAAELQELYLTRNKL----------------------------EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAF--QT 344 (498)
T ss_pred cchhhhhhhhcCcchH----------------------------HHHHHHhhhccccceeeeecCCeeEEEecccc--cc
Confidence 5677777777653322 22234445557888999997776544333333 45
Q ss_pred cccccEEEEeccC
Q 002024 630 FTELKCLTLQSCD 642 (979)
Q Consensus 630 l~~L~~L~L~~~~ 642 (979)
+..|..|.+-.++
T Consensus 345 ~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 345 LFSLSTLNLLSNP 357 (498)
T ss_pred cceeeeeehccCc
Confidence 7788888886553
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.87 E-value=1.7e-09 Score=118.38 Aligned_cols=149 Identities=23% Similarity=0.173 Sum_probs=75.3
Q ss_pred CccEEEccCCccc-----ccCC-cCCCCCceEEEccCCCCcc------cChhhhcCCCCccEEEecC-CcCCCCCcCccC
Q 002024 364 DLTGISLMSNYIH-----EVPA-MLECPKLQVLLLQENSPLV------IPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSF 430 (979)
Q Consensus 364 ~l~~l~l~~~~~~-----~~~~-~~~~~~L~~L~L~~~~~~~------~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~ 430 (979)
.++.+++.++.++ .++. ....+.++.|+++++.+.. .....+..+++|+.|++++ .+....+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 3566666666653 2222 2245556666666665542 1123345566666666666 333233333333
Q ss_pred CcC---CCEEEeCCCCCCCC------ccccCC-cCCcEEEcccCcCc-----ccchhhccCccccEEecCCCCCcc----
Q 002024 431 LVD---LRTLRLEDCYLGDL------SVIGEL-SNLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHCRQLA---- 491 (979)
Q Consensus 431 l~~---L~~L~L~~~~l~~l------~~i~~L-~~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c~~~~---- 491 (979)
+.+ |++|++++|++... ..+..+ ++|+.|++++|.+. .++..+..+++|++|++++|....
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 333 66666666655421 234444 66666666666555 233445555666666666654221
Q ss_pred ccCcchhccCcCCcEEEcccCc
Q 002024 492 LIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 492 ~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
.++.. +..+++|++|++++|.
T Consensus 184 ~l~~~-l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 184 ALAEG-LKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHH-HHhCCCCCEEeccCCc
Confidence 11111 3344566666666553
No 39
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.86 E-value=9.2e-08 Score=107.01 Aligned_cols=179 Identities=18% Similarity=0.199 Sum_probs=111.4
Q ss_pred ccCCCCCCchhHHHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQ---LLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~---l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
+.|.....|+|+++.++. +..++.......+.|+|++|+||||+|+.+++... ..| +.++.......-.+
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~--~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD--APF-----EALSAVTSGVKDLR 78 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--CCE-----EEEecccccHHHHH
Confidence 457788899999999877 88888877777888999999999999999998764 222 22222111111111
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEE--EcCChhhh---hc
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILL--TSRSQGVC---NQ 153 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iii--Ttr~~~~~---~~ 153 (979)
.+++. .......+++.++++|+++... +.+.+...+ . .+..++| ||.+.... ..
T Consensus 79 ~ii~~----------------~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l-e--~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 79 EVIEE----------------ARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV-E--DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHHH----------------HHHhhhcCCceEEEEechhhhCHHHHHHHHHHh-h--cCcEEEEEeCCCChhhhccHHH
Confidence 22111 1111224678899999998652 233333222 2 2444444 34443211 11
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHhCCCC-CC-ccchHHHHHHHHHcCCCchHHHHH
Q 002024 154 MDAQKIFIVRTLLEEESWILFREAAGTVV-EN-SDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 154 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~~-~~-~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
.+.-..+++.+++.++...++.+.+.... .. .-.++....+++.++|-+..+.-+
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~ 196 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNL 196 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHH
Confidence 12237899999999999999988764211 11 233567888999999988766544
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.85 E-value=2.9e-08 Score=96.23 Aligned_cols=176 Identities=15% Similarity=0.159 Sum_probs=98.2
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALN-----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~-----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
+.|.....|+|.++.++.+.-++. +....-+.+|||+|+||||||+.++++.... | .+++...-....++
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl 92 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL 92 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH
Confidence 568889999999999998765543 2345667899999999999999999988732 3 12222111111111
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--c-------hhhhcC-CCCCCC-----------C
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--D-------LQKVGI-PLGEDH-----------E 137 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~-------~~~l~~-~~~~~~-----------~ 137 (979)
..+...+ +++-+|++|+++... + ++.... -....+ +
T Consensus 93 ---------------------~~il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 93 ---------------------AAILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ---------------------HHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ---------------------HHHHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1222222 345578889987541 1 111110 000111 2
Q ss_pred CcEEEEEcCChhhhhccCC--cceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 138 GCNILLTSRSQGVCNQMDA--QKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 138 ~~~iiiTtr~~~~~~~~~~--~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
-.-|-.|||...+...+.. ....++...+.+|-.+++.+.+... .-.-.++.+.+|++++.|-|.-..-+
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-~i~i~~~~~~~Ia~rsrGtPRiAnrl 221 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-NIEIDEDAAEEIARRSRGTPRIANRL 221 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT-T-EE-HHHHHHHHHCTTTSHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 3345578888766544432 3566899999999999999877532 22334567999999999999754443
No 41
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.83 E-value=6.6e-09 Score=108.52 Aligned_cols=290 Identities=21% Similarity=0.249 Sum_probs=195.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRY-DTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.|.+.++|++||||||++-+++. .. ..| +.+.++.+....+...+--.....++...... +..+..+..++. .
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~--~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g--~~~~~~~~~~~~-~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AA--SEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG--DSAVDTLVRRIG-D 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hh--hhcccceeeeeccccCchhHhHHHHHhhcccccccc--hHHHHHHHHHHh-h
Confidence 48899999999999999999988 44 445 56777777777777777777788788765432 223334445554 7
Q ss_pred CeEEEEEcCCCCccc-hhhhcCCCCCCCCCcEEEEEcCChhhhhccCCcceEEcCCCCH-HHHHHHHHHHhCCCCC----
Q 002024 110 KRILVILDDVWERID-LQKVGIPLGEDHEGCNILLTSRSQGVCNQMDAQKIFIVRTLLE-EESWILFREAAGTVVE---- 183 (979)
Q Consensus 110 ~~~LlvlDd~~~~~~-~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~~~~~~~~l~~L~~-~e~~~l~~~~~~~~~~---- 183 (979)
++.++|+||..+..+ ...+...+...+....++.|+|..-. ..+.....+++++. +++.++|...+.....
T Consensus 88 rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l 164 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWL 164 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceee
Confidence 889999999876533 33344445566777789999998743 34667788888887 4889998776632222
Q ss_pred CccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhH---HHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHH
Q 002024 184 NSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYV---WIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAK 260 (979)
Q Consensus 184 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~ 260 (979)
.......+..|.++.+|.|++|..+++..+.-.+..- +.+-+..+..- .......++...+.+.+||.-|+.. .+
T Consensus 165 ~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~ 242 (414)
T COG3903 165 TDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ER 242 (414)
T ss_pred cCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HH
Confidence 3444567899999999999999999999887644121 11222222211 2222223466889999999999887 88
Q ss_pred HHHHHHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHHHHHHhhhceeEEeC---CcceEEechhHHHHHHHH
Q 002024 261 KLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHAIVSTLISSFLLIAG---DEGYVTMHDVVRDVALVI 337 (979)
Q Consensus 261 ~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~---~~~~~~mh~l~~~~~~~~ 337 (979)
..|..++.|...+...... |.+.| .........+...+-.+++++++... ....|+.-+-+|.|+..+
T Consensus 243 ~~~~rLa~~~g~f~~~l~~----~~a~g-----~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLAL----AVAAG-----ADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred HHhcchhhhhhhhcccHHH----HHhcC-----CccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 8899999998876554322 22222 11112334455566778899987652 344677777778777777
Q ss_pred hhc
Q 002024 338 SSK 340 (979)
Q Consensus 338 ~~~ 340 (979)
..+
T Consensus 314 L~r 316 (414)
T COG3903 314 LHR 316 (414)
T ss_pred HHh
Confidence 554
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.81 E-value=1.2e-07 Score=108.16 Aligned_cols=203 Identities=13% Similarity=0.076 Sum_probs=121.8
Q ss_pred CCCCchhHHHHHHHHHHHhc----CC-CceEEEEEcCCCCcHHHHHHHHHHHhhhc---cCC--CeEEEEEeccCCCHHH
Q 002024 8 SKGIFESRKSIVKQLLEALN----NE-NVSVIGLCGMGGVGKTTLAKEIGKQVQES---KRY--DTVVMAVVSHNLSIVK 77 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~~-~~~~i~i~G~~GiGKT~La~~~~~~~~~~---~~f--~~~~~~~~~~~~~~~~ 77 (979)
.++.+.||++|+++|...|. +. ...+++|+|++|+|||+.++.+.+..... ... -.+++|.|..-.+...
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45788999999999988875 22 23577899999999999999998876432 112 2467888888888999
Q ss_pred HHHHHHHHhCCccc--ccchHHHHHHHHHHHhc--CCeEEEEEcCCCCccc--hhhhcCCCC-CCCCCcEEEE--EcCCh
Q 002024 78 IQGEIAAVLGLTIC--GIEESARAGYLWERIKM--EKRILVILDDVWERID--LQKVGIPLG-EDHEGCNILL--TSRSQ 148 (979)
Q Consensus 78 ~~~~i~~~l~~~~~--~~~~~~~~~~~~~~l~~--~~~~LlvlDd~~~~~~--~~~l~~~~~-~~~~~~~iii--Ttr~~ 148 (979)
+...|++++....+ +.........++..+.. +...+||||+++.... -+.+...+. ....+++|++ ++...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999854332 22223344555554422 2346899999986531 111211111 1123444433 34332
Q ss_pred hhh--------hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHH----HcCCCchHHHHHHHHH
Q 002024 149 GVC--------NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAA----KCSGLPIAILTVGRAL 212 (979)
Q Consensus 149 ~~~--------~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~----~~~g~Plal~~~~~~l 212 (979)
++. .++. ...+.++|++.+|..+++..++..... .-.+++...+++ ..|-.-.||.++-...
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~g-VLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKE-IIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCC-CCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 221 2221 234778999999999999988864321 112223333333 3333556666554433
No 43
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.80 E-value=7.5e-09 Score=98.60 Aligned_cols=131 Identities=21% Similarity=0.171 Sum_probs=52.2
Q ss_pred cCCCCccEEEecCCcCCCCCcCcc-CCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhh-ccCccccEEe
Q 002024 406 QGMKDLKVLDLSYILPLSLPPSLS-FLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETF-CRLSHLWLLD 483 (979)
Q Consensus 406 ~~l~~L~~L~L~~~~~~~~p~~~~-~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i-~~L~~L~~L~ 483 (979)
.+..+++.|+|.|+....+ +.++ .+.+|+.|+|++|.++.++.+..+++|++|++++|.+++++..+ ..+++|++|+
T Consensus 16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4556789999999444244 4565 58899999999999999999999999999999999999987655 4689999999
Q ss_pred cCCCCCccccCc-chhccCcCCcEEEcccCccccccccccchhccccccccceecccc
Q 002024 484 LDHCRQLALIPH-GVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHF 540 (979)
Q Consensus 484 l~~c~~~~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 540 (979)
+++|. +.++.. ..+..+++|+.|++.+|...... .--..-+..+++|+.|+-..
T Consensus 95 L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~--~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 95 LSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKK--NYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TTS----SCCCCGGGGG-TT--EEE-TT-GGGGST--THHHHHHHH-TT-SEETTEE
T ss_pred CcCCc-CCChHHhHHHHcCCCcceeeccCCcccchh--hHHHHHHHHcChhheeCCEE
Confidence 99864 444322 22678899999999988653211 11223456778888877654
No 44
>PTZ00202 tuzin; Provisional
Probab=98.79 E-value=6.2e-07 Score=94.92 Aligned_cols=165 Identities=13% Similarity=0.210 Sum_probs=102.3
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALNNE---NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~~~---~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
..|+....|+||++++.++...+.+. ..+++.|+|++|+|||||++.++.... ...++...+ +..++++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~------~~qL~vNpr--g~eElLr 327 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG------MPAVFVDVR--GTEDTLR 327 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC------ceEEEECCC--CHHHHHH
Confidence 45778899999999999999998632 246889999999999999999986553 223333333 7899999
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHh----c-CCeEEEEE--cCCCCccc-hhhhcCCCCCCCCCcEEEEEcCChhhh-
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIK----M-EKRILVIL--DDVWERID-LQKVGIPLGEDHEGCNILLTSRSQGVC- 151 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~----~-~~~~Llvl--Dd~~~~~~-~~~l~~~~~~~~~~~~iiiTtr~~~~~- 151 (979)
.++++||.+... ........+.+.+. . +++.+||+ -+-.+..- +.+. ..+..+..-+.|++----+.+-
T Consensus 328 ~LL~ALGV~p~~-~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 328 SVVKALGVPNVE-ACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHcCCCCcc-cHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHccchhheeeeeehHhhcch
Confidence 999999974332 22233344444332 3 66666665 23222211 1111 0122233444555432222111
Q ss_pred --hccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 152 --NQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 152 --~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
.....-..|.+++++.++|..+-....
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 111234789999999999998876544
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.76 E-value=8.9e-08 Score=97.67 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=104.4
Q ss_pred cCCCCCCchhHHHHH--HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIV--KQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l--~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i 82 (979)
++...+.|+|-+... ..+.+.......+.++|+|++|+|||+|++++++....+ ...+.|+++..... ..
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~~---~~--- 82 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQY---FS--- 82 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhhh---hh---
Confidence 344566677444322 112222223334678999999999999999999987633 34567776642100 00
Q ss_pred HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc---cchhh-hcCCCCCC-CCCcEEE-EEcCC---------
Q 002024 83 AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER---IDLQK-VGIPLGED-HEGCNIL-LTSRS--------- 147 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~---~~~~~-l~~~~~~~-~~~~~ii-iTtr~--------- 147 (979)
..+.+.+ .+.-+||+||++.. .+|+. +...+... ..|..++ +|++.
T Consensus 83 -----------------~~~~~~~--~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~ 143 (229)
T PRK06893 83 -----------------PAVLENL--EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKL 143 (229)
T ss_pred -----------------HHHHhhc--ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccc
Confidence 0111222 23358999999864 22332 22212211 2355554 45543
Q ss_pred hhhhhccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 148 QGVCNQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 148 ~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
+.+.+++.....+++++++.++.++++.+.+.... -.-.+++..-|++.+.|-..++..+
T Consensus 144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHH
Confidence 34555566667999999999999999998885332 2233567888888888866655544
No 46
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.75 E-value=5.8e-07 Score=102.45 Aligned_cols=184 Identities=16% Similarity=0.149 Sum_probs=117.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~ 64 (979)
.|.....++|.++.++.|...+..+. ...+.++|+.|+||||+|+.+++...-.. .|..+
T Consensus 11 RPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 11 RPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 46778899999999999999998654 35667999999999999999998764211 12223
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCC
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEG 138 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~ 138 (979)
++++.....++.+ +..+.+... .++.-++|||+++.... ++.++..+..-..+
T Consensus 91 iEIDAas~rgVDd---------------------IReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASNRGVDE---------------------MAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEecccccccHHH---------------------HHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 3333322222211 222222211 24566888999987643 45444433333456
Q ss_pred cEEEEEcCChh-hh-hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHHHHHH
Q 002024 139 CNILLTSRSQG-VC-NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAILTVGR 210 (979)
Q Consensus 139 ~~iiiTtr~~~-~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 210 (979)
.++|++|++.. +. ...+.-..+.+++++.++..+.+.+...... ..-.++....|++.++|.. -++..+-.
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 67777666543 32 1112237899999999999999998875332 2234566888999998854 46665433
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.75 E-value=3.4e-07 Score=100.48 Aligned_cols=193 Identities=16% Similarity=0.121 Sum_probs=112.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.++.++.+...+..+. ...+.++|+.|+||||+|+.+++......... ..+........++.
T Consensus 11 rP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 11 RPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred CCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 46778899999999999999887654 35678999999999999999998764211110 00000001111111
Q ss_pred HHhCCcccc-----cchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCCh-hhh
Q 002024 84 AVLGLTICG-----IEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQ-GVC 151 (979)
Q Consensus 84 ~~l~~~~~~-----~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~-~~~ 151 (979)
.....+... ......+..+.+.+. .+++-++|+|+++... .++.+...+.....+.++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 110000000 001111222222221 2456799999998764 2444444443334455666666543 332
Q ss_pred hc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH
Q 002024 152 NQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 152 ~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
.. .+.-..+++.+++.++..+.+...+.... ..-.++.+..|++.++|.|..+
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 21 12237899999999999999988764322 1223456788999999987643
No 48
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1e-06 Score=95.19 Aligned_cols=171 Identities=20% Similarity=0.211 Sum_probs=118.9
Q ss_pred CCCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.+..+.+|+++++++...+. +....-+.|+|+.|+|||+.++.++++......-..+++|.|....+..++...|+
T Consensus 15 iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~ 94 (366)
T COG1474 15 IPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKIL 94 (366)
T ss_pred CcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHH
Confidence 34559999999999988775 33334488999999999999999999987543333389999999999999999999
Q ss_pred HHhCC-cccccchHHHHHHHHHHHhc-CCeEEEEEcCCCCccch--hhhcCCCCCC-CCCcEEE--EEcCChhhh-----
Q 002024 84 AVLGL-TICGIEESARAGYLWERIKM-EKRILVILDDVWERIDL--QKVGIPLGED-HEGCNIL--LTSRSQGVC----- 151 (979)
Q Consensus 84 ~~l~~-~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDd~~~~~~~--~~l~~~~~~~-~~~~~ii--iTtr~~~~~----- 151 (979)
+.++. +..+.........+++.+.. ++.+++|+|+++....- +.+...+... ..+++|+ ..+.+..+.
T Consensus 95 ~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 95 NKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 99963 33345556666777777763 67889999999865332 2222212111 1134333 334333222
Q ss_pred ---hccCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 152 ---NQMDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 152 ---~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
..++. ..+.++|.+.+|-..++..++.
T Consensus 175 rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~ 204 (366)
T COG1474 175 RVKSSLGP-SEIVFPPYTAEELYDILRERVE 204 (366)
T ss_pred hhhhccCc-ceeeeCCCCHHHHHHHHHHHHH
Confidence 22222 3488999999999999998874
No 49
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.73 E-value=2e-07 Score=102.56 Aligned_cols=201 Identities=11% Similarity=0.085 Sum_probs=114.5
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC--HHHHHH--
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS--IVKIQG-- 80 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~-- 80 (979)
.|.....++|+++.++.+.+++..+..+.+.|+|+.|+|||++|+.+++.......-..++.++++...+ ...+..
T Consensus 10 ~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 10 RPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCc
Confidence 4566688999999999999999877666788999999999999999998875322112344555432110 000000
Q ss_pred HHHHHhCCc-ccccchHHHHHHHHHHHh-----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCCh-hhh
Q 002024 81 EIAAVLGLT-ICGIEESARAGYLWERIK-----MEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRSQ-GVC 151 (979)
Q Consensus 81 ~i~~~l~~~-~~~~~~~~~~~~~~~~l~-----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~~-~~~ 151 (979)
.....++.. ............+.+... .+.+-++|+||++.... ...+...+.......++|+|+... .+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000000 000001122222222221 13445899999976532 222322222223445677766443 222
Q ss_pred hcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 152 NQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 152 ~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
..+ .....+++.+++.++...++.+.+..... .-..+.+..+++.++|.+..+.
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 211 23367899999999999999887643222 1235578889999988765543
No 50
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=1.1e-07 Score=97.72 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=107.0
Q ss_pred CCCCch--hHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHH
Q 002024 8 SKGIFE--SRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAV 85 (979)
Q Consensus 8 ~~~~~v--gR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~ 85 (979)
..+.|+ +.+..++++.+++.....+.+.|+|++|+|||++|+.+++.... ....++++++..-.+..
T Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~--~~~~~~~i~~~~~~~~~--------- 81 (226)
T TIGR03420 13 TFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE--RGKSAIYLPLAELAQAD--------- 81 (226)
T ss_pred hhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEeHHHHHHhH---------
Confidence 345565 35668888888876555678999999999999999999988752 23446677664332110
Q ss_pred hCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc---ch-hhhcCCCCC-CCCCcEEEEEcCChh---------hh
Q 002024 86 LGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI---DL-QKVGIPLGE-DHEGCNILLTSRSQG---------VC 151 (979)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~---~~-~~l~~~~~~-~~~~~~iiiTtr~~~---------~~ 151 (979)
..+.+.+. + .-+|||||++... .| +.+...+.. ...+.++|+|++... +.
T Consensus 82 --------------~~~~~~~~-~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 82 --------------PEVLEGLE-Q-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred --------------HHHHhhcc-c-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHH
Confidence 01111121 2 2388999997643 22 222221111 123347888887432 12
Q ss_pred hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHH
Q 002024 152 NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVG 209 (979)
Q Consensus 152 ~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 209 (979)
.++.....+++++++.+|...++...+.... ..-.++....+++.+.|.|..+.-+.
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 2222346899999999999999887653211 12234567888888888887776653
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=1.5e-07 Score=109.39 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=114.6
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccC-------------------CCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKR-------------------YDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~-------------------f~~~ 64 (979)
.|.....++|.+..+..|...+..+.. ..+.|+|+.|+||||+|+.+++....... |..+
T Consensus 11 RP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 11 RPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 577788999999999999999876554 45679999999999999999988642211 1112
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~ii 142 (979)
++++......+.. +++|.+.+. .+-..+++-++|||+++.. ...+.++..+-.-..+.++|
T Consensus 91 iEidAas~~kVDd-IReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 91 IEVDAASRTKVDD-TRELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred EEeccccccCHHH-HHHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 2222211111111 122222211 1111367789999999876 23444433332223445555
Q ss_pred EEc-CChhhhh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 143 LTS-RSQGVCN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 143 iTt-r~~~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
++| ....+.. ....-..+++++++.++..+++.+.+... ......+.+..|++.++|.|..+..
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 544 4444331 12233789999999999999998877432 2233445788899999998864443
No 52
>PF14516 AAA_35: AAA-like domain
Probab=98.71 E-value=8.6e-06 Score=88.01 Aligned_cols=205 Identities=13% Similarity=0.094 Sum_probs=127.7
Q ss_pred CcccCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-----CCHH
Q 002024 2 GIITSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-----LSIV 76 (979)
Q Consensus 2 ~~~~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-----~~~~ 76 (979)
||-.|......|+|...-+++.+.+..++ ..+.|.|+..+|||+|...+.+..... -..++++++... .+..
T Consensus 3 ~g~~~~~~~~Yi~R~~~e~~~~~~i~~~G-~~~~I~apRq~GKTSll~~l~~~l~~~--~~~~v~id~~~~~~~~~~~~~ 79 (331)
T PF14516_consen 3 GGPLPLDSPFYIERPPAEQECYQEIVQPG-SYIRIKAPRQMGKTSLLLRLLERLQQQ--GYRCVYIDLQQLGSAIFSDLE 79 (331)
T ss_pred CCCCCCCCCcccCchHHHHHHHHHHhcCC-CEEEEECcccCCHHHHHHHHHHHHHHC--CCEEEEEEeecCCCcccCCHH
Confidence 45566777888899977777777776543 688999999999999999999888743 345668876552 2344
Q ss_pred ----HHHHHHHHHhCCccc-------ccch-HHHHHHHHHHHh--cCCeEEEEEcCCCCccc--------hhhhcCCC--
Q 002024 77 ----KIQGEIAAVLGLTIC-------GIEE-SARAGYLWERIK--MEKRILVILDDVWERID--------LQKVGIPL-- 132 (979)
Q Consensus 77 ----~~~~~i~~~l~~~~~-------~~~~-~~~~~~~~~~l~--~~~~~LlvlDd~~~~~~--------~~~l~~~~-- 132 (979)
.++..+.++++.+.. .... ......+.+.+. ..++.+|++|+++..-. +..++.-.
T Consensus 80 ~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~ 159 (331)
T PF14516_consen 80 QFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQ 159 (331)
T ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHh
Confidence 444555566655421 0111 111222333322 26899999999986522 11111100
Q ss_pred ---CCCCCCcEEEEEcCChhhh-------hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 133 ---GEDHEGCNILLTSRSQGVC-------NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 133 ---~~~~~~~~iiiTtr~~~~~-------~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
.+.....++++ ..+.+.. +.......+++++++.+|...|+.++.... .....+.|...++|+|
T Consensus 160 ~~~~~~~~~L~li~-~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 160 RKNNPIWQKLRLIL-AGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----SQEQLEQLMDWTGGHP 233 (331)
T ss_pred cccCcccceEEEEE-ecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----CHHHHHHHHHHHCCCH
Confidence 01111222222 2221111 122334689999999999999998875421 1223899999999999
Q ss_pred hHHHHHHHHHhcC
Q 002024 203 IAILTVGRALKNR 215 (979)
Q Consensus 203 lal~~~~~~l~~~ 215 (979)
.-+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999988765
No 53
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.70 E-value=1.3e-08 Score=111.21 Aligned_cols=151 Identities=21% Similarity=0.149 Sum_probs=105.5
Q ss_pred CCccEEEccCCcccc-------cC-CcCCCCCceEEEccCCCCcccChhhhcCCCC---ccEEEecC-CcCC----CCCc
Q 002024 363 EDLTGISLMSNYIHE-------VP-AMLECPKLQVLLLQENSPLVIPDKFFQGMKD---LKVLDLSY-ILPL----SLPP 426 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~-------~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~---L~~L~L~~-~~~~----~~p~ 426 (979)
+.+++++++++.+.. ++ .+..+++|+.|++++|.+.......|..+.. |++|++++ .... .+..
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~ 130 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK 130 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence 456777777776552 11 2336889999999999887554444555555 99999998 3331 2234
Q ss_pred CccCC-cCCCEEEeCCCCCCCC------ccccCCcCCcEEEcccCcCc-----ccchhhccCccccEEecCCCCCcc---
Q 002024 427 SLSFL-VDLRTLRLEDCYLGDL------SVIGELSNLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHCRQLA--- 491 (979)
Q Consensus 427 ~~~~l-~~L~~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c~~~~--- 491 (979)
.+..+ ++|+.|++++|.++.- ..+..+++|++|++++|.+. .++..+..+++|++|++++|....
T Consensus 131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH
Confidence 45666 8999999999987732 34667789999999999887 344556677899999999975321
Q ss_pred -ccCcchhccCcCCcEEEcccCcc
Q 002024 492 -LIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 492 -~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
.++.. +..+++|++|++++|..
T Consensus 211 ~~l~~~-~~~~~~L~~L~ls~n~l 233 (319)
T cd00116 211 SALAET-LASLKSLEVLNLGDNNL 233 (319)
T ss_pred HHHHHH-hcccCCCCEEecCCCcC
Confidence 12222 56778899999988754
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=3.2e-07 Score=103.37 Aligned_cols=180 Identities=15% Similarity=0.150 Sum_probs=113.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~ 64 (979)
.|.....++|.+...+.|..++..+. ...+.++|+.|+||||+|+.+++...-.. .+..+
T Consensus 10 RPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 10 RPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 57778899999999999999998654 46778999999999999999998764211 11122
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHH----hcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCC
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERI----KMEKRILVILDDVWERI--DLQKVGIPLGEDHEG 138 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~ 138 (979)
+.++.....++. .+..+.+.. ..+++-++|||+++... ..+.+...+-....+
T Consensus 90 iEIDAAs~~~Vd---------------------dIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~ 148 (702)
T PRK14960 90 IEIDAASRTKVE---------------------DTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEH 148 (702)
T ss_pred EEecccccCCHH---------------------HHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 222222211211 122222221 13566789999998753 344443333233345
Q ss_pred cEEEEEcCCh-hhh-hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 139 CNILLTSRSQ-GVC-NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 139 ~~iiiTtr~~-~~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
.++|++|.+. .+. ...+.-..+++++++.++..+.+.+.+.... ..-..+....|++.++|-+..+.
T Consensus 149 v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 149 VKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred cEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 5666666543 222 2123347899999999999999988775322 22334567889999999765443
No 55
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.66 E-value=9.2e-08 Score=88.85 Aligned_cols=115 Identities=19% Similarity=0.289 Sum_probs=81.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc---CCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc-cchHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK---RYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG-IEESARAGYLWERI 106 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~---~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~~~~l 106 (979)
.+.+.|+|++|+|||++++.++++..... .-..++|+.+....+...+.+.++.+++..... .+.......+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 36889999999999999999999875211 134577999988889999999999999987665 34455567777778
Q ss_pred hcCCeEEEEEcCCCCc-cc--hhhhcCCCCCCCCCcEEEEEcCC
Q 002024 107 KMEKRILVILDDVWER-ID--LQKVGIPLGEDHEGCNILLTSRS 147 (979)
Q Consensus 107 ~~~~~~LlvlDd~~~~-~~--~~~l~~~~~~~~~~~~iiiTtr~ 147 (979)
.+.+..+||+||++.. .. ++.+..... ..+.++|+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 7677789999999875 21 333322222 566677777665
No 56
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.66 E-value=3.1e-07 Score=93.11 Aligned_cols=176 Identities=15% Similarity=0.181 Sum_probs=112.7
Q ss_pred ccCCCCCCchhHHHHHHH---HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQ---LLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~---l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
+.|.....+||.++.+.+ |..++..+..+.+.+||++|+|||+||+.++...+... +.||..+....--.-++
T Consensus 132 mRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR 207 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVR 207 (554)
T ss_pred cCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHH
Confidence 346666778888887754 55666677788888999999999999999998776433 56787776654444444
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE--EEcCChhhh---hc
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNIL--LTSRSQGVC---NQ 153 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~ii--iTtr~~~~~---~~ 153 (979)
.|+++-. -...+ .++|.+|++|+|+.- .+.+.+ ++--..|..++ .||.++.+. ..
T Consensus 208 ~ife~aq--------------~~~~l-~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 208 DIFEQAQ--------------NEKSL-TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHHHH--------------HHHhh-hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHH
Confidence 4444321 11112 378899999999643 332322 22234566555 488887554 22
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHhC---CC---CC--Cc----cchHHHHHHHHHcCCC
Q 002024 154 MDAQKIFIVRTLLEEESWILFREAAG---TV---VE--NS----DLNSIAREVAAKCSGL 201 (979)
Q Consensus 154 ~~~~~~~~l~~L~~~e~~~l~~~~~~---~~---~~--~~----~~~~~~~~i~~~~~g~ 201 (979)
+..-.++.+++|..++...++.+... .. .+ +. -...+.+-++..|+|=
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGD 329 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGD 329 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCch
Confidence 23347889999999999998877432 11 11 11 1234667777778774
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=6.2e-07 Score=100.50 Aligned_cols=190 Identities=18% Similarity=0.192 Sum_probs=114.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccC-------------------CCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKR-------------------YDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~-------------------f~~~ 64 (979)
.|.....++|.++....|...+..+.. ..+.++||+|+||||+|+.+++....... ...+
T Consensus 9 RP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 9 RPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 577888999999999999888876655 45789999999999999999987642110 1122
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~ii 142 (979)
..++.....+..++ +.+.+..... . ..+++-++|+|+++.. ...+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~~---------------p-~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGYR---------------P-MEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhhC---------------h-hcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 23333222222221 1222211100 0 1256779999999765 22344433333222334444
Q ss_pred EEcCC-hhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCC-CchHHHHHHHHH
Q 002024 143 LTSRS-QGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSG-LPIAILTVGRAL 212 (979)
Q Consensus 143 iTtr~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~l 212 (979)
++|.+ ..+... ......+++.+++.++....+.+.+....- .-.++....|++.++| .+.++..+..+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44433 333221 123468999999999999999887743221 2234567888888765 577777775543
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.64 E-value=3.3e-09 Score=104.22 Aligned_cols=124 Identities=27% Similarity=0.325 Sum_probs=56.2
Q ss_pred cCCccEEEccCCcccccCCcC-CCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeC
Q 002024 362 FEDLTGISLMSNYIHEVPAML-ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLE 440 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~ 440 (979)
|+.++.+++++|.++.+.+.. =.|+++.|++++|++..+-. +..+.+|..||||++.-..+-..-.++-|.+.|.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 344455555555555444332 23555555555555544432 344444555555542221222222334444444444
Q ss_pred CCCCCCCccccCCcCCcEEEcccCcCcccc--hhhccCccccEEecCCC
Q 002024 441 DCYLGDLSVIGELSNLEILSLCRSSIKEIP--ETFCRLSHLWLLDLDHC 487 (979)
Q Consensus 441 ~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp--~~i~~L~~L~~L~l~~c 487 (979)
+|.+..++.+++|-+|.+||+++|+|.++. ..|++|+.|++|.+.+|
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 444444444444444444444444444332 23444444444444443
No 59
>PLN03025 replication factor C subunit; Provisional
Probab=98.64 E-value=3.5e-07 Score=98.80 Aligned_cols=188 Identities=13% Similarity=0.100 Sum_probs=111.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-eEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYD-TVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.++.++.|..++..+..+-+.++|++|+|||++|+.+++.... ..|. .++-+..+...+.. ..++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLG-PNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhc-ccCccceeeecccccccHH-HHHHHH
Confidence 46777889999999999999888776667889999999999999999998742 1222 22222233222222 222222
Q ss_pred HHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCCh-hhhhcc-CCcce
Q 002024 84 AVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRSQ-GVCNQM-DAQKI 159 (979)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~~-~~~~~ 159 (979)
+.+..... ....++.-++|+|+++.... ...+...+.......++++++... .+.... ..-..
T Consensus 86 ~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 22111000 00124567899999987632 222322222223445666665432 222111 12357
Q ss_pred EEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHHHH
Q 002024 160 FIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAILTV 208 (979)
Q Consensus 160 ~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~ 208 (979)
+++++++.++....+.+.+....-. -..+....|++.++|-. .++..+
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~egi~-i~~~~l~~i~~~~~gDlR~aln~L 201 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEKVP-YVPEGLEAIIFTADGDMRQALNNL 201 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999998877532222 12456888999998854 444444
No 60
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.63 E-value=4.9e-07 Score=99.24 Aligned_cols=192 Identities=16% Similarity=0.058 Sum_probs=113.2
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+++...-...... ..|..-.+ ...+.
T Consensus 13 RP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~ 85 (484)
T PRK14956 13 RPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEIT 85 (484)
T ss_pred CCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHH
Confidence 577888999999999999999887654 45789999999999999999987642211100 00110000 11111
Q ss_pred HHhCCccccc-----chHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE-EEcCChhhh
Q 002024 84 AVLGLTICGI-----EESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNIL-LTSRSQGVC 151 (979)
Q Consensus 84 ~~l~~~~~~~-----~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~ii-iTtr~~~~~ 151 (979)
.....+.... .....+..+.+.+. .+++-++|+|+++.. +.++.+...+-.......+| .||....+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 1111110000 00112222222222 356779999999865 33555544443222344444 444444443
Q ss_pred hcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 152 NQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 152 ~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
... ..-+.+.+.+++.++..+.+.+.+.... ..-.++....|++.++|.+..
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHHH
Confidence 222 2236799999999999999988775322 223456788899999998753
No 61
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=1.9e-06 Score=98.58 Aligned_cols=183 Identities=15% Similarity=0.117 Sum_probs=111.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNN----ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~----~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
.|.....++|+++.++++.+++.. ...+.+.|+|++|+|||++|+.++++.. ++ ++-++++...+.. .+.
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~-~i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTAD-VIE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHH-HHH
Confidence 466778899999999999998862 2257899999999999999999998874 22 3344444333222 222
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc------hhhhcCCCCCCCCCcEEEEEcCChh-hhh-
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID------LQKVGIPLGEDHEGCNILLTSRSQG-VCN- 152 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~------~~~l~~~~~~~~~~~~iiiTtr~~~-~~~- 152 (979)
.++...... ..+...++-+||+|+++.... ...+...+. ..+..||+++.+.. ...
T Consensus 83 ~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 83 RVAGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 222221110 011113678999999986522 333322222 23344666654431 111
Q ss_pred -ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH-HHHHH
Q 002024 153 -QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI-LTVGR 210 (979)
Q Consensus 153 -~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal-~~~~~ 210 (979)
.-.....+++.+++.++....+.+.+....-. -..++...|++.++|-...+ ..+-.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~-i~~eaL~~Ia~~s~GDlR~ain~Lq~ 205 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIE-CDDEALKEIAERSGGDLRSAINDLQA 205 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 11234789999999999999998877432222 23467899999999854443 34433
No 62
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=5e-07 Score=101.57 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=113.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccC--CCeEEEEEeccCCCHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKR--YDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~ 81 (979)
.|.....+||.++.++.|...+..+.. ..+.++|+.|+||||+|+.+++...-... -.... +........++.
T Consensus 11 RPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~----~~PCG~C~sC~~ 86 (700)
T PRK12323 11 RPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT----AQPCGQCRACTE 86 (700)
T ss_pred CCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC----CCCCcccHHHHH
Confidence 466788899999999999999986543 56789999999999999999987742110 00000 000011111111
Q ss_pred HHHH-----hCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE-EEcCChh
Q 002024 82 IAAV-----LGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL-LTSRSQG 149 (979)
Q Consensus 82 i~~~-----l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii-iTtr~~~ 149 (979)
|... +..+.......+.+..+.+... .++.-++|||+++... ..+.+...+-.-..+.++| +||....
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1110 0000000011122233333322 3566799999998763 3444444443333444544 5555444
Q ss_pred hhhcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 150 VCNQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 150 ~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
+...+ +.-..+.++.++.++..+.+.+.+.... .....+....|++.++|.|....
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 44211 2237899999999999999988764322 12234457889999999886443
No 63
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.61 E-value=1e-06 Score=96.18 Aligned_cols=184 Identities=13% Similarity=0.084 Sum_probs=109.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe--ccCCCHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV--SHNLSIVKIQGEI 82 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~i 82 (979)
.|.....++|+++.++.+..++..+..+.+.|+|+.|+|||++|+.+++...... +. ..++.+ +....... ....
T Consensus 12 rP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~-~~~i~~~~~~~~~~~~-~~~~ 88 (319)
T PRK00440 12 RPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WR-ENFLELNASDERGIDV-IRNK 88 (319)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-cc-cceEEeccccccchHH-HHHH
Confidence 4566677999999999999999876666789999999999999999998864322 21 112222 22222111 1111
Q ss_pred HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCCh-hhhh-ccCCcc
Q 002024 83 AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRSQ-GVCN-QMDAQK 158 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~~-~~~~-~~~~~~ 158 (979)
+..+....+ .....+-++++|+++.... ...+...+......+++|+++... .+.. ......
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 111110000 0013456889999876522 233333232233445666665432 2211 112235
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 159 IFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 159 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
.+++.+++.++....+...+....- .-..+.+..+++.++|.+..+.
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 7899999999999999887753222 2234568889999999776533
No 64
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=3.6e-06 Score=89.14 Aligned_cols=211 Identities=13% Similarity=0.102 Sum_probs=140.1
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 3 IITSSSKGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 3 ~~~~~~~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
++..++++.++||+.++..+.+++. ....+.++|.|-+|.|||.+...++.+......--.++++.+..-....++
T Consensus 143 l~~t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~ai 222 (529)
T KOG2227|consen 143 LLNTAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAI 222 (529)
T ss_pred HHhcCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHH
Confidence 3456678899999999999999975 345688999999999999999999988874433345688888876777778
Q ss_pred HHHHHHHhCCc-ccccchHHHHHHHHHHHhcCC-eEEEEEcCCCCccc--hhhhcCCCCC-CCCCcEEEEEcCCh-----
Q 002024 79 QGEIAAVLGLT-ICGIEESARAGYLWERIKMEK-RILVILDDVWERID--LQKVGIPLGE-DHEGCNILLTSRSQ----- 148 (979)
Q Consensus 79 ~~~i~~~l~~~-~~~~~~~~~~~~~~~~l~~~~-~~LlvlDd~~~~~~--~~~l~~~~~~-~~~~~~iiiTtr~~----- 148 (979)
...|+..+-.. .......+....+.+...+.+ .+|+|+|++|.... ...+...|.| ..+++++|..---.
T Consensus 223 F~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 223 FKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 88887777211 111122333444444444444 78999999986532 2333333333 45666666432211
Q ss_pred -hhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHh
Q 002024 149 -GVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALK 213 (979)
Q Consensus 149 -~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 213 (979)
....+ .-....+.++|.+.++.++++..+.............++.+++++.|.-=.+..+-.+.+
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111 123478999999999999999999876555555555677777777766555555555554
No 65
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.57 E-value=1.8e-08 Score=99.07 Aligned_cols=128 Identities=20% Similarity=0.217 Sum_probs=79.9
Q ss_pred CCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCC
Q 002024 409 KDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCR 488 (979)
Q Consensus 409 ~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~ 488 (979)
..|..||||++....+-+++.-.+.+|+|++++|.+..+..+..|++|+.||||+|.+.++..+-.+|-++++|.+++|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N- 362 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN- 362 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-
Confidence 3466677777433355666666777777777777776666677777777777777766666555556666777777763
Q ss_pred CccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecccccCC
Q 002024 489 QLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 489 ~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
.++.++. +.+|-+|..|++++|... .-..+..+++++-|+.+.+.++..
T Consensus 363 ~iE~LSG--L~KLYSLvnLDl~~N~Ie----~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 363 KIETLSG--LRKLYSLVNLDLSSNQIE----ELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hHhhhhh--hHhhhhheeccccccchh----hHHHhcccccccHHHHHhhcCCCc
Confidence 3555544 566666777777665431 122234556666666666655544
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.2e-06 Score=99.13 Aligned_cols=188 Identities=13% Similarity=0.105 Sum_probs=114.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~ 64 (979)
.|.....++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++...... .|..+
T Consensus 11 RP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 11 RPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred CcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 467788899999999999999876543 5577999999999999999998664211 12233
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii 142 (979)
+++......+..++ +++.+.+ ...-..+++-++|+|+++... ..+.+...+-.......+|
T Consensus 91 ieidaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 91 IEIDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred EEeecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 33332222222111 1111111 111113667799999998653 2444443333333444455
Q ss_pred -EEcCChhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHHHHHH
Q 002024 143 -LTSRSQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAILTVGR 210 (979)
Q Consensus 143 -iTtr~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 210 (979)
+||....+... ...-..+++.+++.++....+.+.+.... ....++....|++.++|-+ .|+..+-.
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55544433322 22347899999999999988887664322 2233456788999999965 45555543
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.56 E-value=7.9e-07 Score=102.06 Aligned_cols=195 Identities=15% Similarity=0.091 Sum_probs=113.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++.......+. .........++.|.
T Consensus 11 RP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 11 RPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 467788999999999999999986543 4568999999999999999998765321110 00111112222221
Q ss_pred HHhCCcc---cc--cchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE-EEcCChhhh
Q 002024 84 AVLGLTI---CG--IEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL-LTSRSQGVC 151 (979)
Q Consensus 84 ~~l~~~~---~~--~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii-iTtr~~~~~ 151 (979)
..-..+. .. ....+.+..+.+.+. .+++-++|||+++... ..+.+...+-.-..+.++| +||....+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 1100000 00 001112222222221 3677799999998753 2444433232223344444 455444443
Q ss_pred h-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 152 N-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 152 ~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
. ....-..+.+++++.++....+.+...... ....++....|++.++|.+.....
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 122347899999999999999988763221 222345678899999997764443
No 68
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1e-06 Score=99.51 Aligned_cols=198 Identities=15% Similarity=0.119 Sum_probs=112.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|++..++.+...+..+. .+.+.++|+.|+|||++|+.+++........+. ...+....++.+.
T Consensus 11 RP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~-------~~Cg~C~sCr~i~ 83 (605)
T PRK05896 11 RPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG-------DCCNSCSVCESIN 83 (605)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHH
Confidence 57788899999999999999987543 457889999999999999999988742221110 0111112222221
Q ss_pred HHhCCccccc-----chHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEc-CChhhh
Q 002024 84 AVLGLTICGI-----EESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTS-RSQGVC 151 (979)
Q Consensus 84 ~~l~~~~~~~-----~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTt-r~~~~~ 151 (979)
.....+.... .....+..+.+... .+++-++|+|+++.. .....+...+.....+..+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 1111110000 00111222222211 234557999999765 23444433332222344454444 433332
Q ss_pred -hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHHHHHH
Q 002024 152 -NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAILTVGR 210 (979)
Q Consensus 152 -~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 210 (979)
+..+....+++.+++.++....+.+.+..... .-..+.+..+++.++|-+ .|+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 11223468999999999999999887743221 122455788999999965 45555443
No 69
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.8e-06 Score=97.61 Aligned_cols=184 Identities=21% Similarity=0.153 Sum_probs=115.0
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe------------------EE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDT------------------VV 65 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~------------------~~ 65 (979)
.|.....++|.++.++.|...+..+.. ..+.++|+.|+||||+|+.+++.......+.. +.
T Consensus 9 RP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 9 RPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 567788899999999999998876543 56689999999999999999988753222211 22
Q ss_pred EEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCc
Q 002024 66 MAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGC 139 (979)
Q Consensus 66 ~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~ 139 (979)
+++.....+. ..+..+.+.+. .+++-++|+|+++... .++.+...+.......
T Consensus 89 el~~~~~~~v---------------------d~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t 147 (504)
T PRK14963 89 EIDAASNNSV---------------------EDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHV 147 (504)
T ss_pred EecccccCCH---------------------HHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCE
Confidence 2222211111 11222222221 2566789999998653 3455544443333455
Q ss_pred EEEEEcCC-hhhhhcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH-HHHHH
Q 002024 140 NILLTSRS-QGVCNQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI-LTVGR 210 (979)
Q Consensus 140 ~iiiTtr~-~~~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal-~~~~~ 210 (979)
.+|+++.. ..+...+ .....+++.+++.++..+.+.+.+....- .-..+.+..|++.++|.+..+ ..+-.
T Consensus 148 ~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~aln~Lek 220 (504)
T PRK14963 148 IFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDAESLLER 220 (504)
T ss_pred EEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55555543 3332222 23468999999999999999987743221 123456888999999987544 44433
No 70
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.3e-06 Score=97.15 Aligned_cols=182 Identities=19% Similarity=0.119 Sum_probs=114.0
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc-------------------cCCCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQES-------------------KRYDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~-------------------~~f~~~ 64 (979)
.|.....++|.+..++.|...+..+.. ..+.++|+.|+||||+|+.++...... ..+..+
T Consensus 8 RP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 8 RPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 577888999999999999988876654 478899999999999999998854211 112223
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii 142 (979)
+.++.....++.++ +++.+.....+ ..+++-++|+|+++... ..+.+...+..-.++.++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYLP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhcc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 44444333233221 12222111000 02566789999997653 3444544443334556566
Q ss_pred EEc-CChhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 143 LTS-RSQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 143 iTt-r~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
++| ....+... ...-..+++.+++.++..+.+.+.+..... .-.++.+..|++.++|-+..
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 555 43343321 223478999999999999999988753322 22345678899999987653
No 71
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.55 E-value=1.9e-06 Score=97.00 Aligned_cols=196 Identities=19% Similarity=0.112 Sum_probs=112.8
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEeccCCCHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDT-VVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~i 82 (979)
.|.....++|.++.+..|...+..+. ...+.++|+.|+||||+|+.+++.......... -.+..| .....+..+
T Consensus 16 RP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C----~~C~~C~~i 91 (507)
T PRK06645 16 RPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC----EQCTNCISF 91 (507)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC----CCChHHHHH
Confidence 56778889999999999988776554 357889999999999999999987642211100 000000 000111111
Q ss_pred HHHhCCccc-----ccchHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE-EcCChhh
Q 002024 83 AAVLGLTIC-----GIEESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILL-TSRSQGV 150 (979)
Q Consensus 83 ~~~l~~~~~-----~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iii-Ttr~~~~ 150 (979)
......+.. .......+..+.+... .+++-++|+|+++.. ..++.+...+........+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110000000 0001112222222221 356778999999875 335555444433344555554 5554444
Q ss_pred hhcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH
Q 002024 151 CNQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 151 ~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
...+ ..-..+++.+++.++..+.+.+.+....- .-..+.+..|++.++|.+..+
T Consensus 172 ~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHH
Confidence 3222 23367999999999999999988853322 223456788999999976443
No 72
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.54 E-value=3.1e-09 Score=113.77 Aligned_cols=170 Identities=24% Similarity=0.283 Sum_probs=101.1
Q ss_pred CccEEEccCCcccccC-CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCC
Q 002024 364 DLTGISLMSNYIHEVP-AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDC 442 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~ 442 (979)
+-...+++.|.+..+| ++..+..|..+.|..|.+-.+|.. ++.+..|.+|||+.+-...+|..++.|+ |++|.+.+|
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC
Confidence 3445666666666666 334566666666666666666654 4566666666666633336666665443 566666666
Q ss_pred CCCCC-ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccc
Q 002024 443 YLGDL-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETN 521 (979)
Q Consensus 443 ~l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 521 (979)
+++.+ +.++.+..|..||.+.|++.++|..+++|.+|+.|++..+. +..+|.+ +..| .|..|+++.|.. .
T Consensus 154 kl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNki------s 224 (722)
T KOG0532|consen 154 KLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKI------S 224 (722)
T ss_pred ccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCce------e
Confidence 66666 45666666666666666666666666666666666666643 4556655 3422 355566655433 1
Q ss_pred cchhccccccccceecccccCCc
Q 002024 522 AKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 522 ~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
.....+.+|+.|++|-+.++-.+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCC
Confidence 22355566666666666665544
No 73
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=1.7e-07 Score=86.07 Aligned_cols=119 Identities=19% Similarity=0.157 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
+++.|.|+.|+||||++++++++.. ....++++++.+......... .....+.+. ...++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~----------------~~~~~~~~~-~~~~~ 62 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADP----------------DLLEYFLEL-IKPGK 62 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhh----------------hhHHHHHHh-hccCC
Confidence 6889999999999999999998775 334567777655432111000 011222222 22467
Q ss_pred EEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhh------ccCCcceEEcCCCCHHHH
Q 002024 112 ILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCN------QMDAQKIFIVRTLLEEES 170 (979)
Q Consensus 112 ~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~------~~~~~~~~~l~~L~~~e~ 170 (979)
.++|||+++...+|......+.+.....+|++|+.+..... ..+....+++.||+..|.
T Consensus 63 ~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 63 KYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 88999999998887776555555556678999888654442 112346789999998874
No 74
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.53 E-value=2.1e-06 Score=92.58 Aligned_cols=199 Identities=13% Similarity=0.065 Sum_probs=116.9
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccC--CCeEEEEEeccCCCHHHHH
Q 002024 3 IITSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKR--YDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 3 ~~~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~ 79 (979)
...|.....++|.++..+.+...+..+. ...+.|+|+.|+||||+|+.+++....... +... ............
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 3456678889999999999999988654 356889999999999999999998753211 1100 011111122233
Q ss_pred HHHHHHhCCc-------cccc-----c--hHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCc
Q 002024 80 GEIAAVLGLT-------ICGI-----E--ESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEGC 139 (979)
Q Consensus 80 ~~i~~~l~~~-------~~~~-----~--~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~ 139 (979)
+.+...-..+ .... . ..+.+..+.+.+. .+++-++|+|+++.... .+.+...+-....+.
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 3333221100 0000 0 0122334444443 35677999999987532 233322222222233
Q ss_pred -EEEEEcCChhhhhcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 140 -NILLTSRSQGVCNQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 140 -~iiiTtr~~~~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
.|++|++...+.... ..-..+++.+++.++..+++.+.... .+ ..++.+..+++.++|.|.....
T Consensus 173 ~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~--~~~~~~~~i~~~s~G~pr~Al~ 239 (351)
T PRK09112 173 LFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG--SDGEITEALLQRSKGSVRKALL 239 (351)
T ss_pred eEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 455555544443222 22368999999999999999885422 11 2245578899999999985544
No 75
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.53 E-value=7.8e-07 Score=84.75 Aligned_cols=123 Identities=20% Similarity=0.177 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc
Q 002024 13 ESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG 92 (979)
Q Consensus 13 vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 92 (979)
+||++++.++...+.....+.+.|+|++|+|||++++.+++... .....++++.+............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 48899999999998876667899999999999999999999875 223456677665443322221111100
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEcCCCCc-----cchhhhcCCCCCC---CCCcEEEEEcCChh
Q 002024 93 IEESARAGYLWERIKMEKRILVILDDVWER-----IDLQKVGIPLGED---HEGCNILLTSRSQG 149 (979)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~-----~~~~~l~~~~~~~---~~~~~iiiTtr~~~ 149 (979)
............++.++|+||++.. ..+......+... ..+..+|+|+....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011111112356789999999853 1222222222221 35778888887653
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.53 E-value=1.2e-06 Score=89.67 Aligned_cols=171 Identities=16% Similarity=0.153 Sum_probs=103.7
Q ss_pred CCch-h-HHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhC
Q 002024 10 GIFE-S-RKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLG 87 (979)
Q Consensus 10 ~~~v-g-R~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~ 87 (979)
+.|+ | -...+..+.++......+.++|+|+.|+|||+|+..+++.... ....+.|+++......
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~--~~~~v~y~~~~~~~~~------------ 87 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ--RGRAVGYVPLDKRAWF------------ 87 (235)
T ss_pred cccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEEHHHHhhh------------
Confidence 3444 5 3445555666555555578899999999999999999998763 2456777776431100
Q ss_pred CcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc---cchhh-hcCCCCCC-CCC-cEEEEEcCCh---------hhhh
Q 002024 88 LTICGIEESARAGYLWERIKMEKRILVILDDVWER---IDLQK-VGIPLGED-HEG-CNILLTSRSQ---------GVCN 152 (979)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~---~~~~~-l~~~~~~~-~~~-~~iiiTtr~~---------~~~~ 152 (979)
...+.+.+. ..-++++||++.. .+|+. +...+... ..| .++|+||+.. ++.+
T Consensus 88 -----------~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~S 154 (235)
T PRK08084 88 -----------VPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLAS 154 (235)
T ss_pred -----------hHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHH
Confidence 001112221 1237889999754 22222 11112111 123 3688888743 3335
Q ss_pred ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 153 QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 153 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
++....++++++++.++-.+++.+++... .-.-.+++..-|++.+.|-..++..+
T Consensus 155 Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 155 RLDWGQIYKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHhCCceeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 55666899999999999999998866432 12334567888888888765554443
No 77
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.51 E-value=2.8e-07 Score=91.60 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=43.5
Q ss_pred CchhHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-----CHHHHHHHH
Q 002024 11 IFESRKSIVKQLLEALN---NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-----SIVKIQGEI 82 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~---~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-----~~~~~~~~i 82 (979)
.|+||+++++++...+. ....+.+.|+|++|+|||+|++++++.......+ ++.+.+.... +...+.+++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHH
Confidence 48999999999999992 4456899999999999999999999988865323 4444444331 124455555
Q ss_pred HHH
Q 002024 83 AAV 85 (979)
Q Consensus 83 ~~~ 85 (979)
+++
T Consensus 79 ~~~ 81 (185)
T PF13191_consen 79 IDQ 81 (185)
T ss_dssp S--
T ss_pred HHH
Confidence 444
No 78
>PRK08727 hypothetical protein; Validated
Probab=98.51 E-value=1.5e-06 Score=88.90 Aligned_cols=170 Identities=15% Similarity=0.097 Sum_probs=101.3
Q ss_pred CCCCchhHHH-HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHh
Q 002024 8 SKGIFESRKS-IVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVL 86 (979)
Q Consensus 8 ~~~~~vgR~~-~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l 86 (979)
..+.|++... .+..+.....+.....++|+|++|+|||.|++++++..... ...+.|++... ....+
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~---- 84 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL---- 84 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH----
Confidence 3455655443 33434443333334679999999999999999999887633 34667776432 11111
Q ss_pred CCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc---chh-hhcCCCCC-CCCCcEEEEEcCCh---------hhhh
Q 002024 87 GLTICGIEESARAGYLWERIKMEKRILVILDDVWERI---DLQ-KVGIPLGE-DHEGCNILLTSRSQ---------GVCN 152 (979)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~---~~~-~l~~~~~~-~~~~~~iiiTtr~~---------~~~~ 152 (979)
....+.+ .+.-+||+||++... .+. .+...+.. ...+..||+|++.. ++.+
T Consensus 85 -------------~~~~~~l--~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~S 149 (233)
T PRK08727 85 -------------RDALEAL--EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRS 149 (233)
T ss_pred -------------HHHHHHH--hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHH
Confidence 1122223 233589999997542 122 12111111 12456699988742 2223
Q ss_pred ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH
Q 002024 153 QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 153 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
++.....+++++++.++..+++.+++... .-.-.++...-|++.+.|-...+
T Consensus 150 Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~-~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 150 RLAQCIRIGLPVLDDVARAAVLRERAQRR-GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHhcCceEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCHHHH
Confidence 44445789999999999999999877432 12233456788888887754443
No 79
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.3e-06 Score=99.19 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=112.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~ 64 (979)
.|.....+||.+..++.|...+..+.. ..+.++|+.|+||||+|+.+++...-.. .+..+
T Consensus 11 RP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 11 RPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 477788999999999999999976543 5678999999999999999998764211 12223
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii 142 (979)
+.++.....++.++ +++.+.+.... ..++.-++|+|+++... ..+.+...+-.-..+.++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~p----------------~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYAP----------------TKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 34433322222222 22222221110 13566789999998752 3444443333333455555
Q ss_pred EEcC-Chhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 143 LTSR-SQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 143 iTtr-~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
++|. ...+... .+.-..+++++++.++..+.+...+....- .-..+....|++.++|-+..+.
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHH
Confidence 5444 3333311 122367889999999998888777643221 2223457788999999775443
No 80
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.50 E-value=2.4e-06 Score=98.03 Aligned_cols=197 Identities=16% Similarity=0.134 Sum_probs=113.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCC--CeEEEEEeccCCCHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRY--DTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~ 81 (979)
.|.....++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+++...-.... ..... ...+....++.
T Consensus 11 RP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 11 RPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 467788899999999999999886554 667899999999999999998876421110 00000 01111222222
Q ss_pred HHHHhCCccccc-----chHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEc-CChh
Q 002024 82 IAAVLGLTICGI-----EESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTS-RSQG 149 (979)
Q Consensus 82 i~~~l~~~~~~~-----~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTt-r~~~ 149 (979)
|...-..+.... ...+.+..+.+... .++.-++|||+++... .++.+...+..-..+.++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 211000000000 01112223333222 2456688999998763 3455544443333455555444 4333
Q ss_pred hh-hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 150 VC-NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 150 ~~-~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
+. .....-..+++++++.++..+.+.+.+....- ....+....|++.++|-+..+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 33 22233478999999999999999887743222 2234567888999998765443
No 81
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.50 E-value=1.2e-06 Score=99.93 Aligned_cols=180 Identities=18% Similarity=0.172 Sum_probs=110.8
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccC-------------------CCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKR-------------------YDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-------------------f~~~ 64 (979)
.|.....++|+++.+..|..++..+. ...+.++|+.|+||||+|+.+++...-... |..+
T Consensus 11 RP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 11 RPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 57778899999999999999988655 356789999999999999999987542111 1112
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHH----hcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCC
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERI----KMEKRILVILDDVWERID--LQKVGIPLGEDHEG 138 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~ 138 (979)
+.++......+ ..+..+.+.. ..+++-++|||+++.... .+.+...+......
T Consensus 91 lEidaAs~~gV---------------------d~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAASNTGI---------------------DNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEeccccCCH---------------------HHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 22222211111 1122222211 125667899999987533 33333333222345
Q ss_pred cEEEEEcCCh-hhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 139 CNILLTSRSQ-GVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 139 ~~iiiTtr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
.++|++|.+. .+... .+.-..+++.+++.++....+.+.+.... ..-..+.+..|++.++|.+..+.
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-IAYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHH
Confidence 5566655443 22211 12225678889999999999988775322 22234568889999999875444
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.48 E-value=5.2e-06 Score=90.09 Aligned_cols=201 Identities=15% Similarity=0.030 Sum_probs=114.1
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEE-E--EEeccCCCHHHH
Q 002024 3 IITSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVV-M--AVVSHNLSIVKI 78 (979)
Q Consensus 3 ~~~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~-~--~~~~~~~~~~~~ 78 (979)
.-.|.....++|.++..+.|.+.+..+. ...+.|+|+.|+||+++|..+++..--........ - .......+....
T Consensus 12 ~~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~ 91 (365)
T PRK07471 12 APHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPV 91 (365)
T ss_pred CCCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChH
Confidence 3466678889999999999999988654 35688999999999999999999764222110000 0 000000000112
Q ss_pred HHHHHHHhCCcc-------cccc-------hHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCC
Q 002024 79 QGEIAAVLGLTI-------CGIE-------ESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEG 138 (979)
Q Consensus 79 ~~~i~~~l~~~~-------~~~~-------~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~ 138 (979)
.+.+...-..+. .+.. ..+.+..+.+.+. .+.+-++|+|+++.... ...+...+..-..+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 222211110000 0000 0122333333332 36677899999986532 33333333222345
Q ss_pred cEEEEEcCCh-hhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 139 CNILLTSRSQ-GVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 139 ~~iiiTtr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
..+|++|.+. .+... ...-+.+.+.+++.++..+.+.+...... ++....+++.++|.|+....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~~-----~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDLP-----DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccCC-----HHHHHHHHHHcCCCHHHHHHH
Confidence 5566666554 33222 22347899999999999999988653211 122367899999999855443
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=4.1e-06 Score=91.64 Aligned_cols=171 Identities=15% Similarity=0.094 Sum_probs=103.8
Q ss_pred CCCchhHHHHHHHHHHHhcCC----------CceEEEEEcCCCCcHHHHHHHHHHHhhhcc------------------C
Q 002024 9 KGIFESRKSIVKQLLEALNNE----------NVSVIGLCGMGGVGKTTLAKEIGKQVQESK------------------R 60 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~----------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~------------------~ 60 (979)
...++|.++.++.|...+..+ -...+.++||.|+|||++|+.++....-.. .
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 456899999999999999754 246688999999999999999988653211 0
Q ss_pred CCeEEEEEecc-CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCC
Q 002024 61 YDTVVMAVVSH-NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLG 133 (979)
Q Consensus 61 f~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~ 133 (979)
+..+.++.... ...+ ..+..+.+... .+++-++|+|+++.... .+.+...+-
T Consensus 84 hpD~~~i~~~~~~i~i---------------------~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LE 142 (394)
T PRK07940 84 HPDVRVVAPEGLSIGV---------------------DEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVE 142 (394)
T ss_pred CCCEEEeccccccCCH---------------------HHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhh
Confidence 11122221111 0111 11222223222 25566888999987632 233333332
Q ss_pred CCCCCcEEEEEcCC-hhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 134 EDHEGCNILLTSRS-QGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 134 ~~~~~~~iiiTtr~-~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
....+..+|++|.+ ..+... .+.-..+.+++++.++..+.+.+..+ . ..+.+..+++.++|.|....
T Consensus 143 ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~-~-----~~~~a~~la~~s~G~~~~A~ 211 (394)
T PRK07940 143 EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG-V-----DPETARRAARASQGHIGRAR 211 (394)
T ss_pred cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC-C-----CHHHHHHHHHHcCCCHHHHH
Confidence 33345555555554 343322 22347899999999999998875432 1 13457788999999986443
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.46 E-value=4.9e-06 Score=82.52 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=93.8
Q ss_pred HHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeEEEEEeccCCCHHHHHH
Q 002024 21 QLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 21 ~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~~~~~~~~~~~~~~~~~ 80 (979)
.+.+.+..+.. ..+.++|+.|+|||++|+.+++...... .+....++.........+.++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~ 82 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVR 82 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHH
Confidence 34455544444 6788999999999999999998875321 111122222211111111122
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCCh-hhhhcc-CC
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQ-GVCNQM-DA 156 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~~-~~ 156 (979)
++.+.+...+ ..+.+-++|+||++... ..+.+...+........+|++|++. .+.... ..
T Consensus 83 ~i~~~~~~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr 146 (188)
T TIGR00678 83 ELVEFLSRTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR 146 (188)
T ss_pred HHHHHHccCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh
Confidence 2222221110 02567789999997653 2444444443334455666666543 222111 23
Q ss_pred cceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 157 QKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 157 ~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
...+++.+++.+|..+.+.+. + . ..+.+..+++.++|.|..
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~-g-i-----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 147 CQVLPFPPLSEEALLQWLIRQ-G-I-----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred cEEeeCCCCCHHHHHHHHHHc-C-C-----CHHHHHHHHHHcCCCccc
Confidence 468999999999999999887 2 1 245688999999998863
No 85
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.45 E-value=5.6e-06 Score=91.76 Aligned_cols=185 Identities=16% Similarity=0.134 Sum_probs=111.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc--------------------CCCe
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK--------------------RYDT 63 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~--------------------~f~~ 63 (979)
.|.....++|.++.++.+.+.+..+.. ..+.++|+.|+|||++|+.++....... +++
T Consensus 9 rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 9 RPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred CCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 355677889999999999998876543 5678999999999999999998764211 122
Q ss_pred EEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEE
Q 002024 64 VVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNI 141 (979)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~i 141 (979)
+++++.....+..+ .+++...+...+ ..+++-++|+|+++.. ...+.+...+........+
T Consensus 88 ~~~~~~~~~~~~~~-~~~l~~~~~~~p----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 88 VIEIDAASNNGVDD-IREILDNVKYAP----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEEeeccccCCHHH-HHHHHHHHhcCc----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 22332221111111 112222211100 0245668899998765 2344444444333345566
Q ss_pred EEEcCChh-hhh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 142 LLTSRSQG-VCN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 142 iiTtr~~~-~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
|++|.+.. +.. .......+++.+++.++..+.+..++....- .-.++.+..+++.++|-|..+...
T Consensus 151 Il~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 151 ILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHH
Confidence 66665443 221 1223467899999999999999887743221 122456888999999988655443
No 86
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=5.3e-06 Score=89.44 Aligned_cols=176 Identities=14% Similarity=0.148 Sum_probs=111.6
Q ss_pred CCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhh----ccCCCeEEEEEe-ccCCCHHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQE----SKRYDTVVMAVV-SHNLSIVKIQGEI 82 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~----~~~f~~~~~~~~-~~~~~~~~~~~~i 82 (979)
...++|.++.++.+...+..+. .....++|+.|+|||++|+.++..... ..+.|...|... ....+..+ ++++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~ 81 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNI 81 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHH
Confidence 3567899999999999987554 356789999999999999999987532 234454444331 22222223 2223
Q ss_pred HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCChhhh-h-ccCCcc
Q 002024 83 AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRSQGVC-N-QMDAQK 158 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~~~~~-~-~~~~~~ 158 (979)
.+.+...+ ..+++-++|+|+++.. +.++.+...+..-..++.+|++|.+.+.. . ....-+
T Consensus 82 ~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 82 IEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred HHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 23222111 0256667778887654 34555655554445677777777655322 1 122347
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 159 IFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 159 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
.+++.+++.++....+.+..... ..+.+..++..++|.|..+.
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 89999999999998887765311 12347788999999886544
No 87
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.44 E-value=1.9e-07 Score=105.07 Aligned_cols=188 Identities=28% Similarity=0.291 Sum_probs=123.4
Q ss_pred EEEccCCcc-cccCCcCCCCCceEEEccCCCCcccChhhhcCCC-CccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCC
Q 002024 367 GISLMSNYI-HEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMK-DLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYL 444 (979)
Q Consensus 367 ~l~l~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l 444 (979)
.+....+.+ .........+.++.|.+.+|.+.++++. ...++ +|+.|+++++....+|..+..+++|+.|++.+|++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l 175 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL 175 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence 345555554 3333444557777777777777777664 23443 78888888743336666777788888888888877
Q ss_pred CCCcccc-CCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccc
Q 002024 445 GDLSVIG-ELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAK 523 (979)
Q Consensus 445 ~~l~~i~-~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 523 (979)
.+++... .+++|+.|++++|.+..+|..+..+..|++|.++++..+. .+.. +.++.++..|.+.++... ..
T Consensus 176 ~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~~------~~ 247 (394)
T COG4886 176 SDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKLE------DL 247 (394)
T ss_pred hhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCceee------ec
Confidence 7775544 7778888888888888887777667778888877754333 3333 667777777665544321 11
Q ss_pred hhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEc
Q 002024 524 VVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVR 563 (979)
Q Consensus 524 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~ 563 (979)
+..++.+.+++.|+++.+....++....+.+++.|++...
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred cchhccccccceeccccccccccccccccCccCEEeccCc
Confidence 3445666777777777777776666666777777776543
No 88
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.44 E-value=2.4e-06 Score=103.14 Aligned_cols=184 Identities=14% Similarity=0.106 Sum_probs=106.6
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC----CC-eEEEEEeccCCCHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR----YD-TVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~----f~-~~~~~~~~~~~~~~~~~ 79 (979)
.|...++++||++++.++++.|......-+.++|++|+|||++|+.++++...... .+ .++.++.+.-..
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a----- 256 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA----- 256 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-----
Confidence 34567899999999999999988665566679999999999999999998753221 11 222333221100
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEcCChh
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIK-MEKRILVILDDVWERI---------DLQKVGIPLGEDHEGCNILLTSRSQG 149 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~---------~~~~l~~~~~~~~~~~~iiiTtr~~~ 149 (979)
+... ..+....+..+.+... .+.+.+|++|+++... +...+..+.... ...++|-+|...+
T Consensus 257 -------g~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~~e 327 (852)
T TIGR03345 257 -------GASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTWAE 327 (852)
T ss_pred -------cccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCHHH
Confidence 0000 0011233344444443 3578999999986541 111122222222 2345665555432
Q ss_pred hhh-------ccCCcceEEcCCCCHHHHHHHHHHHhCC---CCCCccchHHHHHHHHHcCCCc
Q 002024 150 VCN-------QMDAQKIFIVRTLLEEESWILFREAAGT---VVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 150 ~~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~~~---~~~~~~~~~~~~~i~~~~~g~P 202 (979)
+.. ..+.-+.+.+++++.+++.++++..... ...-.-..+....+++.+.++.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 211 1123368999999999999997544421 1112223455667777776554
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.44 E-value=9.8e-09 Score=110.03 Aligned_cols=150 Identities=26% Similarity=0.366 Sum_probs=107.0
Q ss_pred CCcCCccEEEccCCcccccCC-cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEE
Q 002024 360 DTFEDLTGISLMSNYIHEVPA-MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~ 438 (979)
..+..+..+.+..|.+..+|. ...+..|+.|+|+.|.+..+|..+ + .--|++|-++++....+|..++.+..|..|+
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l-C-~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld 172 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL-C-DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLD 172 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh-h-cCcceeEEEecCccccCCcccccchhHHHhh
Confidence 334456666777777777774 446777777888888877777764 2 3357788888744447777777777788888
Q ss_pred eCCCCCCCC-ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 439 LEDCYLGDL-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 439 L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
.+.|.+..+ +.+++|..|+.|++..|++..+|..++ .-.|..||++. +++..+|-. +-+|+.||+|.+.+|..
T Consensus 173 ~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 173 VSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeeccc-Cceeecchh-hhhhhhheeeeeccCCC
Confidence 888877666 567778888888888888878887777 33577777776 456777777 77888888887776644
No 90
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.1e-07 Score=99.21 Aligned_cols=85 Identities=22% Similarity=0.205 Sum_probs=49.5
Q ss_pred cCCcCCCEEEeCCCCCCCCc---cccCCcCCcEEEcccCcCccc---chhhccCccccEEecCCCCCccccCcchhccCc
Q 002024 429 SFLVDLRTLRLEDCYLGDLS---VIGELSNLEILSLCRSSIKEI---PETFCRLSHLWLLDLDHCRQLALIPHGVISQLD 502 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l~---~i~~L~~L~~L~Ls~~~l~~l---p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~ 502 (979)
+++..||.+.|++|.....+ ....+++++.||||+|-+.+. -.....|++|+.|+++.|....-.....-..+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 35667777777777655553 456677788888887755433 344567788888888775432211111122344
Q ss_pred CCcEEEcccCc
Q 002024 503 KLEEFYMWNTF 513 (979)
Q Consensus 503 ~L~~L~l~~~~ 513 (979)
.|..|.++.|.
T Consensus 198 ~lK~L~l~~CG 208 (505)
T KOG3207|consen 198 HLKQLVLNSCG 208 (505)
T ss_pred hhheEEeccCC
Confidence 55555555553
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.43 E-value=2e-06 Score=86.01 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=121.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCC-eEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYD-TVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.+..++.|...+.....+...+|||+|.|||+-|+.+++..--...|. ++.=.++|+..+.. +.++-.
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~Ki 109 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREKI 109 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhhh
Confidence 3667889999999999999999887778899999999999999999998875434453 34444555544333 111111
Q ss_pred HHhCCcccccchHHHHHHHHHHHh-----cCCe-EEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE-EEcCChhhhhcc
Q 002024 84 AVLGLTICGIEESARAGYLWERIK-----MEKR-ILVILDDVWER--IDLQKVGIPLGEDHEGCNIL-LTSRSQGVCNQM 154 (979)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~-----~~~~-~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~ii-iTtr~~~~~~~~ 154 (979)
+...++..... ..++ -++|||+++.. +.|.+++..+.......+.| ||+--..+....
T Consensus 110 -------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 110 -------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred -------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 11111111110 1123 57889999876 44776655444444555544 554433332221
Q ss_pred -CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCC-CchHHHHHHH
Q 002024 155 -DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSG-LPIAILTVGR 210 (979)
Q Consensus 155 -~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 210 (979)
..-..+++++|.+++...-++..+.... ..-..+....|++.++| +-.|+.++-+
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d~~al~~I~~~S~GdLR~Ait~Lqs 233 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEG-VDIDDDALKLIAKISDGDLRRAITTLQS 233 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 1226789999999999999988885333 23345568889999998 4556655533
No 92
>PRK09087 hypothetical protein; Validated
Probab=98.43 E-value=2.4e-06 Score=86.49 Aligned_cols=163 Identities=15% Similarity=0.093 Sum_probs=96.6
Q ss_pred CCCch--hHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHh
Q 002024 9 KGIFE--SRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVL 86 (979)
Q Consensus 9 ~~~~v--gR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l 86 (979)
.+.|+ +.....-...+.+.+...+.++|+|++|+|||+|++.++.... +.+++.. .+..+++.
T Consensus 20 ~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~-- 84 (226)
T PRK09087 20 RDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN-- 84 (226)
T ss_pred hhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH--
Confidence 44555 3344333333332233346789999999999999999987643 1233321 11111111
Q ss_pred CCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc-chhhhcCCCCC-CCCCcEEEEEcCC---------hhhhhccC
Q 002024 87 GLTICGIEESARAGYLWERIKMEKRILVILDDVWERI-DLQKVGIPLGE-DHEGCNILLTSRS---------QGVCNQMD 155 (979)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~-~~~~l~~~~~~-~~~~~~iiiTtr~---------~~~~~~~~ 155 (979)
.+.+ -++++||++... +-..+...++. ...|..+|+|++. +++.+++.
T Consensus 85 ------------------~~~~---~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~ 143 (226)
T PRK09087 85 ------------------AAAE---GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLK 143 (226)
T ss_pred ------------------hhhc---CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHh
Confidence 1111 278889996532 11222222211 1346678888863 33445556
Q ss_pred CcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 156 AQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 156 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
....+++++++.++-.+++.+.+... .-.-.+++..-|++.+.|...++..+
T Consensus 144 ~gl~~~l~~pd~e~~~~iL~~~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 144 AATVVEIGEPDDALLSQVIFKLFADR-QLYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred CCceeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 67899999999999999999888542 22233567888888888876666543
No 93
>PRK05642 DNA replication initiation factor; Validated
Probab=98.43 E-value=3.9e-06 Score=85.80 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
..++|+|++|+|||.|++++++....+ ...++|++... +... ...+.+.+. +-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~-----------------~~~~~~~~~-~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR-----------------GPELLDNLE-QYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh-----------------hHHHHHhhh-hCC
Confidence 578899999999999999999877532 35677876542 1111 012333333 222
Q ss_pred EEEEEcCCCCc---cchhh-hcCCCCC-CCCCcEEEEEcCCh---------hhhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002024 112 ILVILDDVWER---IDLQK-VGIPLGE-DHEGCNILLTSRSQ---------GVCNQMDAQKIFIVRTLLEEESWILFREA 177 (979)
Q Consensus 112 ~LlvlDd~~~~---~~~~~-l~~~~~~-~~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~ 177 (979)
++|+||++.. ..|+. +...++. ...|.++|+|++.. ++.+++.....+++++++.++...++..+
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~k 178 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLR 178 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 6789999643 22322 2222221 13466788887642 22234445578999999999999999866
Q ss_pred hCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 178 AGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
+.... -.-.+++.+-+++.+.|-...+..+
T Consensus 179 a~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 179 ASRRG-LHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 64321 2223567888888888866555544
No 94
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.43 E-value=2e-06 Score=101.08 Aligned_cols=174 Identities=18% Similarity=0.225 Sum_probs=103.5
Q ss_pred cCCCCCCchhHHHHHH---HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVK---QLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~---~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
.|...+.|+|+++.+. .+...+..+....+.|+|++|+||||+|+.+++... ..|. .+.+.. .+..++ ++
T Consensus 23 RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~--~~f~---~lna~~-~~i~di-r~ 95 (725)
T PRK13341 23 RPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR--AHFS---SLNAVL-AGVKDL-RA 95 (725)
T ss_pred CCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc--Ccce---eehhhh-hhhHHH-HH
Confidence 4667778999999885 566777766666788999999999999999998764 2331 111110 011110 01
Q ss_pred HHHHhCCcccccchHHHHHHHHHHHh-cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE--EcCChhh--h-hc
Q 002024 82 IAAVLGLTICGIEESARAGYLWERIK-MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILL--TSRSQGV--C-NQ 153 (979)
Q Consensus 82 i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iii--Ttr~~~~--~-~~ 153 (979)
.+....+.+. .+++.++||||++.. ...+.+...+ ..+..++| ||.+... . ..
T Consensus 96 ----------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 96 ----------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVNKAL 156 (725)
T ss_pred ----------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhhhHh
Confidence 1111111111 246779999999764 2333333222 23454554 3444321 1 11
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHhCC------CCCCccchHHHHHHHHHcCCCchH
Q 002024 154 MDAQKIFIVRTLLEEESWILFREAAGT------VVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 154 ~~~~~~~~l~~L~~~e~~~l~~~~~~~------~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
......+++++++.++...++.+.+.. .....-.++....|++.+.|....
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ 213 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARS 213 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHH
Confidence 122467999999999999999876641 112223356778899999886443
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.4e-06 Score=95.99 Aligned_cols=200 Identities=15% Similarity=0.129 Sum_probs=115.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.+..++.|...+..+. ...+.++|+.|+|||++|+.+++........+. ...+....++.|.
T Consensus 11 RP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 11 RPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 56678889999999999999887654 467889999999999999999987742111000 0011111112221
Q ss_pred HHhCCccccc-----chHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCC-hhhh
Q 002024 84 AVLGLTICGI-----EESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRS-QGVC 151 (979)
Q Consensus 84 ~~l~~~~~~~-----~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~ 151 (979)
..-..+.... .....+..+.+.+. .+++-++|||+++.. .....+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 1110000000 00111112222111 356778999999865 2344444433222234455554544 4333
Q ss_pred hc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHHHHHH
Q 002024 152 NQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTVGRAL 212 (979)
Q Consensus 152 ~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l 212 (979)
.. .+.-..+++.+++.++..+.+.+.+.... ..-..+.+..|++.++|- -.|+..+...+
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 21 12236789999999999999988764322 122345688899999995 46777765544
No 96
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.41 E-value=3.1e-06 Score=101.68 Aligned_cols=159 Identities=14% Similarity=0.126 Sum_probs=95.0
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC---C-Ce-EEEEEeccCCCHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR---Y-DT-VVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~---f-~~-~~~~~~~~~~~~~~~~~ 80 (979)
+...++++||+++++++.+.|......-+.++|++|+|||++|+.++++...... + +. ++.++++ .+
T Consensus 178 ~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~------~l-- 249 (731)
T TIGR02639 178 NGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG------SL-- 249 (731)
T ss_pred cCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH------HH--
Confidence 4456799999999999999998665556779999999999999999998753221 1 22 2233211 11
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------chhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------DLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
.... . ...+....+..+.+.+....+.+|++|+++... +...+..+....+ .-++|-+|...++
T Consensus 250 --~a~~--~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~e~ 323 (731)
T TIGR02639 250 --LAGT--K-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYEEY 323 (731)
T ss_pred --hhhc--c-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHHHH
Confidence 1000 0 001223445556666554568999999987431 1122222222222 2345544443222
Q ss_pred hh-------ccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 151 CN-------QMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 151 ~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
.. ..+.-+.+++++++.++..++++...
T Consensus 324 ~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 324 KNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 10 11123579999999999999998655
No 97
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=5.6e-06 Score=95.68 Aligned_cols=194 Identities=18% Similarity=0.109 Sum_probs=111.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.+..++.|...+..+. ...+.++||.|+|||++|+.++...-.....+ .+ .+..-+....
T Consensus 13 RP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~-------~pC~~C~~~~ 83 (725)
T PRK07133 13 RPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LL-------EPCQECIENV 83 (725)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CC-------CchhHHHHhh
Confidence 46677889999999999999997654 45678999999999999999998764211100 00 0000000000
Q ss_pred HHhCCcc---cc--cchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE-EEcCChhhh
Q 002024 84 AVLGLTI---CG--IEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL-LTSRSQGVC 151 (979)
Q Consensus 84 ~~l~~~~---~~--~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii-iTtr~~~~~ 151 (979)
....+. .+ ......+..+.+.+. .+++-++|+|+++... .+..+...+-.......+| +|++...+.
T Consensus 84 -~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 84 -NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred -cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 000000 00 001122233333332 3567789999997652 3444443333323344444 455444443
Q ss_pred h-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHH
Q 002024 152 N-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVG 209 (979)
Q Consensus 152 ~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 209 (979)
. .....+.+++.+++.++..+.+...+....- ....+.+..+++.++|-+. |+..+.
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2 2223468999999999999999876643221 2223457889999998654 444443
No 98
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=3.1e-06 Score=94.06 Aligned_cols=200 Identities=16% Similarity=0.113 Sum_probs=115.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE-eccCCCHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV-VSHNLSIVKIQGEI 82 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~i 82 (979)
.|.....++|.+..++.|...+..+.. ..+.++||.|+||||+|+.+++...-...++..-|.. ...+......++.+
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 11 RPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred CCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 577888999999999999999987654 4578999999999999999998875322111111110 00011111122222
Q ss_pred HHHhCCcc-----cccchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEc-CChhh
Q 002024 83 AAVLGLTI-----CGIEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTS-RSQGV 150 (979)
Q Consensus 83 ~~~l~~~~-----~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTt-r~~~~ 150 (979)
...-..+. .+....+.+..+.+.+. .+++-++|+|+++... .++.+...+........+|++| +...+
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl 170 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHh
Confidence 11111100 00011122333333332 3566789999998653 3455544443333455555544 43433
Q ss_pred hhcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH
Q 002024 151 CNQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 151 ~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
.... .....+++.+++.++..+.+...+.... ..-.++.+..+++.++|.+..+
T Consensus 171 ~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g-~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 171 PATIASRCQRFNFKRIPLEEIQQQLQGICEAEG-ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 3211 2236799999999999998888774221 2233456889999999977533
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.4e-06 Score=95.59 Aligned_cols=187 Identities=16% Similarity=0.141 Sum_probs=112.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~ 64 (979)
.|.....++|.++.++.+...+..+.. ..+.++|+.|+||||+|+.+++...-.. .|..+
T Consensus 11 rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 11 RPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 466778899999999999999886544 5667999999999999999998764211 11122
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEE
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~ii 142 (979)
++++........+ ++++.+.+...+ ..+++-++|+|+++.... .+.+...+........+|
T Consensus 91 ~ei~~~~~~~vd~-ir~l~~~~~~~p----------------~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 91 IEVDAASNTQVDA-MRELLDNAQYAP----------------TRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred eEeeccccCCHHH-HHHHHHHHhhCc----------------ccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 3332221111111 112222111100 135677999999987633 444443333333445555
Q ss_pred EEc-CChhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHH
Q 002024 143 LTS-RSQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVG 209 (979)
Q Consensus 143 iTt-r~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 209 (979)
.+| ....+... ...-..+++++++.++..+.+.+.+.... ....++.+..|++.++|.+. |+..+.
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr~al~lld 222 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMRDALSLLD 222 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 544 43333311 11236899999999999999888774222 22234567889999999775 444443
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.39 E-value=8.1e-06 Score=82.37 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=96.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
...++|+|+.|+|||.|..++++.......-..++|++. .++...++..+.. .....+.+.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~--------~~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD--------GEIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT--------TSHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc--------ccchhhhhhhh--c
Confidence 356899999999999999999999875444456778744 4555555555432 11233334443 4
Q ss_pred eEEEEEcCCCCccc---hhh-hcCCCCC-CCCCcEEEEEcCCh---------hhhhccCCcceEEcCCCCHHHHHHHHHH
Q 002024 111 RILVILDDVWERID---LQK-VGIPLGE-DHEGCNILLTSRSQ---------GVCNQMDAQKIFIVRTLLEEESWILFRE 176 (979)
Q Consensus 111 ~~LlvlDd~~~~~~---~~~-l~~~~~~-~~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~L~~~e~~~l~~~ 176 (979)
-=+|++||++.... ++. +...+.. ...|.++|+|++.. ++.+++...-.+++++.+.++..+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 45778999976522 211 1111111 13466899998642 2334455667999999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 177 AAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
.+....- .-.++++.-+++.+.+....+..+
T Consensus 178 ~a~~~~~-~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 178 KAKERGI-ELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHhCC-CCcHHHHHHHHHhhcCCHHHHHHH
Confidence 8853222 233456777777777665555443
No 101
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.38 E-value=3.9e-06 Score=81.46 Aligned_cols=175 Identities=18% Similarity=0.236 Sum_probs=113.3
Q ss_pred cCCCCCCchhHHHHHHH---HHHHhcCC------CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 5 TSSSKGIFESRKSIVKQ---LLEALNNE------NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~---l~~~l~~~------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
+.-..+.++|.++...+ |.++|.++ ..+-|.++||+|.|||.+|++++++.++- ++.+..
T Consensus 116 ~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-------~l~vka---- 184 (368)
T COG1223 116 SDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-------LLLVKA---- 184 (368)
T ss_pred ccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-------eEEech----
Confidence 34456778898888765 56667643 36789999999999999999999887631 222211
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------c----hhhhcCCCCC--CCCCc
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------D----LQKVGIPLGE--DHEGC 139 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------~----~~~l~~~~~~--~~~~~ 139 (979)
.+-|-+.+| +....+.+++++-.+.-++++++|+++... + .+++...+.. ...|.
T Consensus 185 ---t~liGehVG------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 185 ---TELIGEHVG------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred ---HHHHHHHhh------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 112222222 235667788888878889999999987541 1 3333333322 34576
Q ss_pred EEEEEcCChhhhhcc---CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 140 NILLTSRSQGVCNQM---DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 140 ~iiiTtr~~~~~~~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
..|.+|.+.++.... +-.+.+++.--+++|-.+++..++...+-+-+ ...+.++++++|.
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 677777776665322 23477888888899999999988853332211 1256677777764
No 102
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.38 E-value=7.8e-06 Score=91.71 Aligned_cols=165 Identities=12% Similarity=0.036 Sum_probs=106.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
..++|+|+.|+|||.|++++++.......-..+++++. .++...+...++... .......++.. ..
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~------~~~~~~~~~~~--~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH------KEIEQFKNEIC--QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh------hHHHHHHHHhc--cC
Confidence 56889999999999999999997764444456666644 456666666654210 12233333332 34
Q ss_pred EEEEEcCCCCcc---c-hhhhcCCCCC-CCCCcEEEEEcCCh---------hhhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002024 112 ILVILDDVWERI---D-LQKVGIPLGE-DHEGCNILLTSRSQ---------GVCNQMDAQKIFIVRTLLEEESWILFREA 177 (979)
Q Consensus 112 ~LlvlDd~~~~~---~-~~~l~~~~~~-~~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~ 177 (979)
-+||+||++... . .+.+...++. ...|..||+|+... .+..++...-++.+++++.++..+++.++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~ 287 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKE 287 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHH
Confidence 488899997542 1 1222222221 12345688886532 22344455678899999999999999988
Q ss_pred hCCCCC-CccchHHHHHHHHHcCCCchHHHHHHH
Q 002024 178 AGTVVE-NSDLNSIAREVAAKCSGLPIAILTVGR 210 (979)
Q Consensus 178 ~~~~~~-~~~~~~~~~~i~~~~~g~Plal~~~~~ 210 (979)
+....- ..-.++++.-|++.++|.|..+.-+..
T Consensus 288 ~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 288 IKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 853221 134467889999999999988876643
No 103
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=9.3e-06 Score=91.43 Aligned_cols=186 Identities=16% Similarity=0.133 Sum_probs=112.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccC------------------C-CeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKR------------------Y-DTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~------------------f-~~~ 64 (979)
.|.....++|.++..+.|...+..+.. ..+.++|+.|+|||++|+.+++..-.... + ..+
T Consensus 9 RP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv 88 (535)
T PRK08451 9 RPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDI 88 (535)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeE
Confidence 577888999999999999999876654 45689999999999999999987632111 0 112
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii 142 (979)
+.+......+..++. +++...... -..+++-++|+|+++... ..+.+...+-......++|
T Consensus 89 ~eldaas~~gId~IR-elie~~~~~----------------P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FI 151 (535)
T PRK08451 89 IEMDAASNRGIDDIR-ELIEQTKYK----------------PSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFI 151 (535)
T ss_pred EEeccccccCHHHHH-HHHHHHhhC----------------cccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEE
Confidence 222221111122111 111111100 002566788999997653 2344433333334456666
Q ss_pred EEcCCh-hhhh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 143 LTSRSQ-GVCN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 143 iTtr~~-~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
++|.+. .+.. .......+++.+++.++....+...+....- .-.++.+..|++.++|-+..+...
T Consensus 152 L~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 152 LATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 655543 2221 1123478999999999999999877643222 223456888999999987554443
No 104
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.2e-07 Score=98.95 Aligned_cols=188 Identities=20% Similarity=0.102 Sum_probs=121.8
Q ss_pred CcCCccEEEccCCcccccC---CcCCCCCceEEEccCCCCccc--ChhhhcCCCCccEEEecCCcCCCCCcC--ccCCcC
Q 002024 361 TFEDLTGISLMSNYIHEVP---AMLECPKLQVLLLQENSPLVI--PDKFFQGMKDLKVLDLSYILPLSLPPS--LSFLVD 433 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~---~~~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~~~~~~~~p~~--~~~l~~ 433 (979)
.+++++.+.+.+......+ ....|++++.|+|++|-+..+ ...+...+++|+.|+|+.+.-....++ -..+.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 3456677777777766555 234788999999998887743 345667889999999988433111111 236788
Q ss_pred CCEEEeCCCCCCCC---ccccCCcCCcEEEcccCc-CcccchhhccCccccEEecCCCCCccccCc-chhccCcCCcEEE
Q 002024 434 LRTLRLEDCYLGDL---SVIGELSNLEILSLCRSS-IKEIPETFCRLSHLWLLDLDHCRQLALIPH-GVISQLDKLEEFY 508 (979)
Q Consensus 434 L~~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~-l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~-~~l~~L~~L~~L~ 508 (979)
|+.|.|++|+++.- ......|+|+.|++.+|. +..-......++.|+.|+++++..+ .++. ..++.++.|+.|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhhhh
Confidence 99999999987632 234567889999998884 3222334556778889999886644 3331 1267888888888
Q ss_pred cccCcccccccc-ccchhccccccccceecccccCCcCCCCC
Q 002024 509 MWNTFKNWDCET-NAKVVELQALTRLTNLMFHFPQNSILPSH 549 (979)
Q Consensus 509 l~~~~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 549 (979)
++.|....-... ..+......+++|+.|++..+.+..++..
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL 319 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCcccccccc
Confidence 877754211111 11223346677888888888777655554
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.35 E-value=6.2e-06 Score=90.94 Aligned_cols=177 Identities=15% Similarity=0.169 Sum_probs=103.9
Q ss_pred CCCchhHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 9 KGIFESRKSIVKQLLEALN----N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~----~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
...+.|+++.+++|.+.+. . ...+-+.++|++|+|||++|+++++... ..| +.+. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~--~~~-----~~v~----~ 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--ATF-----IRVV----G 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC--CCE-----Eecc----h
Confidence 4467899999999988763 1 1245588999999999999999998775 222 2111 1
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------------chhhhcCCCC--CCCC
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------------DLQKVGIPLG--EDHE 137 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------------~~~~l~~~~~--~~~~ 137 (979)
..+... .++ ........+.+......+.+|++||++... .+..+...+. ....
T Consensus 190 ~~l~~~---~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~ 260 (364)
T TIGR01242 190 SELVRK---YIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG 260 (364)
T ss_pred HHHHHH---hhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 111111 111 011223333333344567899999987541 0111211111 1134
Q ss_pred CcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHHH
Q 002024 138 GCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAILT 207 (979)
Q Consensus 138 ~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~ 207 (979)
+.+||.||...+.. ...+....++++..+.++..++|..+........+. ....+++.+.|+. ..+..
T Consensus 261 ~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~sg~dl~~ 334 (364)
T TIGR01242 261 NVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGASGADLKA 334 (364)
T ss_pred CEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCCHHHHHH
Confidence 56788888754322 212235689999999999999999887543322211 2567888887763 34443
No 106
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.35 E-value=4.9e-06 Score=82.43 Aligned_cols=172 Identities=19% Similarity=0.190 Sum_probs=106.4
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALN-----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~-----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
+.|.....|+|.++..+++.=.+. +....=|.++||+|.||||||.-++++..++-+ ++-..
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k------~tsGp------- 86 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLK------ITSGP------- 86 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeE------ecccc-------
Confidence 357778899999999998876554 334556889999999999999999999875421 11110
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-hhhhcCCCC---------CCCCCc---------
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-LQKVGIPLG---------EDHEGC--------- 139 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-~~~l~~~~~---------~~~~~~--------- 139 (979)
..........+...+ .+.=++++|+++.... .+++..+-+ ..++++
T Consensus 87 -------------~leK~gDlaaiLt~L--e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 87 -------------ALEKPGDLAAILTNL--EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -------------cccChhhHHHHHhcC--CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 111112222222222 2344566788764411 111111110 112222
Q ss_pred --EEEEEcCChhhhhccC--CcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 140 --NILLTSRSQGVCNQMD--AQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 140 --~iiiTtr~~~~~~~~~--~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
-|-.|||...+...++ -....+++..+.+|-.++..+.+.... ..-.++.+.+|+++..|-|.-
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~-i~i~~~~a~eIA~rSRGTPRI 219 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILG-IEIDEEAALEIARRSRGTPRI 219 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhC-CCCChHHHHHHHHhccCCcHH
Confidence 3557899776553332 236788899999999999998884222 222345699999999999963
No 107
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=4.2e-07 Score=102.36 Aligned_cols=176 Identities=30% Similarity=0.364 Sum_probs=144.2
Q ss_pred cCCccEEEccCCcccccCCcCCCC--CceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 362 FEDLTGISLMSNYIHEVPAMLECP--KLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
...+..+.+.+|.+..+++..... +|+.|++++|.+..++.. +..++.|+.|+++++....+|...+.+++|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 357889999999999999877654 899999999999998633 68899999999999544488887779999999999
Q ss_pred CCCCCCCCccc-cCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccc
Q 002024 440 EDCYLGDLSVI-GELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDC 518 (979)
Q Consensus 440 ~~~~l~~l~~i-~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 518 (979)
+++.++.++.. ..+.+|++|.+++|.....+..+.+++++..|.+.++ .+..++.. ++.+.+|+.|+++++...
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n-~~~~~~~~-~~~l~~l~~L~~s~n~i~--- 268 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN-KLEDLPES-IGNLSNLETLDLSNNQIS--- 268 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc-eeeeccch-hccccccceecccccccc---
Confidence 99999999665 5777799999999987788888999999999997774 35554554 789999999999887542
Q ss_pred ccccchhccccccccceecccccCCcCCC
Q 002024 519 ETNAKVVELQALTRLTNLMFHFPQNSILP 547 (979)
Q Consensus 519 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 547 (979)
.+..++.+.+|+.|+++++.....+
T Consensus 269 ----~i~~~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 269 ----SISSLGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ----ccccccccCccCEEeccCccccccc
Confidence 2233788899999999887665443
No 108
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.3e-05 Score=88.89 Aligned_cols=188 Identities=16% Similarity=0.177 Sum_probs=110.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc------cCCCe-EEEEEeccCCCHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQES------KRYDT-VVMAVVSHNLSIV 76 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~------~~f~~-~~~~~~~~~~~~~ 76 (979)
.|.....++|.+..++.+...+..+.. +.+.++|+.|+|||++|+.+++..... ..|.. ++-+......+..
T Consensus 12 rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 91 (367)
T PRK14970 12 RPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVD 91 (367)
T ss_pred CCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHH
Confidence 467788899999999999999986544 578899999999999999998876421 11211 1111111111111
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEc-CChhhhh-
Q 002024 77 KIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTS-RSQGVCN- 152 (979)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTt-r~~~~~~- 152 (979)
..+.+++++...+ . .+++-++|+|+++.... ++.+...+........+|+++ +...+..
T Consensus 92 -~i~~l~~~~~~~p---------------~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 -DIRNLIDQVRIPP---------------Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred -HHHHHHHHHhhcc---------------c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 1222222221100 0 24556899999976532 444433232223344455444 3333321
Q ss_pred ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHHH
Q 002024 153 QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVGR 210 (979)
Q Consensus 153 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 210 (979)
..+....+++.+++.++....+.+.+....- .-..+.+..+++.++|-+. ++..+..
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1223367999999999999999887743221 1224568888999998554 4444433
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.33 E-value=7.6e-06 Score=94.25 Aligned_cols=198 Identities=14% Similarity=0.095 Sum_probs=115.2
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCC--eEEEEEeccCCCHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYD--TVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~ 81 (979)
.|.....++|.+..++.|...+..+. ...+.++|+.|+||||+|+.+++...-..... ...+ ...+...-++.
T Consensus 19 RP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 19 RPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 46677889999999999999987654 34688999999999999999998764221110 0000 01111122222
Q ss_pred HHHHhCCcccc-----cchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEE-EcCChh
Q 002024 82 IAAVLGLTICG-----IEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILL-TSRSQG 149 (979)
Q Consensus 82 i~~~l~~~~~~-----~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iii-Ttr~~~ 149 (979)
|...-..+... ......+..+.+... .+++-++|+|+++... ..+.+...+-.-..+..+|+ |+....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211111100 011122333333332 2556689999997663 24444444333334555554 444443
Q ss_pred hhhcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 150 VCNQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 150 ~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
+...+ ..-..+++.+++.++....+.+.+..... .-..+.+..|++.++|.+..+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 33222 22368999999999999999887743221 12235688899999998765543
No 110
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.32 E-value=1.9e-05 Score=80.92 Aligned_cols=188 Identities=15% Similarity=0.150 Sum_probs=116.6
Q ss_pred HHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCC----eEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 16 KSIVKQLLEALNNE---NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYD----TVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 16 ~~~l~~l~~~l~~~---~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~----~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
.+.++++.+++..+ ..+-+.|+|.+|.|||++++.+++.......-+ -|+.+.....++...+...|+.+++.
T Consensus 43 ~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 43 KEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred HHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 34456666666633 356789999999999999999998765332222 37778888889999999999999998
Q ss_pred cccccchHHH-HHHHHHHHhcCCeEEEEEcCCCCccc---------hhhhcCCCCCCCCCcEEEEEcCC--------hhh
Q 002024 89 TICGIEESAR-AGYLWERIKMEKRILVILDDVWERID---------LQKVGIPLGEDHEGCNILLTSRS--------QGV 150 (979)
Q Consensus 89 ~~~~~~~~~~-~~~~~~~l~~~~~~LlvlDd~~~~~~---------~~~l~~~~~~~~~~~~iiiTtr~--------~~~ 150 (979)
+......... ..++.+-+..-+.-+||||++++.-. ++.+ ..+.....-+.|.+-|+. .++
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L-K~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL-KFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH-HHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8755444333 33334445455666888999976411 2222 122223334455565553 223
Q ss_pred hhccCCcceEEcCCCCHHH-HHHHHHHHhC----CCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 151 CNQMDAQKIFIVRTLLEEE-SWILFREAAG----TVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 151 ~~~~~~~~~~~l~~L~~~e-~~~l~~~~~~----~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
+.+ ...+.++....++ ...|+..... .....-...+.+..|...++|+.=-+..
T Consensus 202 a~R---F~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 202 ASR---FEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred Hhc---cCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 222 3556676666544 4444433221 1222334567899999999997654443
No 111
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.31 E-value=6.1e-06 Score=84.70 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=99.4
Q ss_pred CCCCch-hHHH-HHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 8 SKGIFE-SRKS-IVKQLLEALN-NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 8 ~~~~~v-gR~~-~l~~l~~~l~-~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
..+.|+ |+.. .+..+.++.. ....+.+.|+|+.|+|||+||+.+++..... -..+.++++..... .
T Consensus 16 ~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~--~~~~~~i~~~~~~~------~--- 84 (227)
T PRK08903 16 TFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG--GRNARYLDAASPLL------A--- 84 (227)
T ss_pred hhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEehHHhHH------H---
Confidence 455555 5433 4444555444 2334678899999999999999999976422 23455665533210 0
Q ss_pred HhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCC-CCCCc-EEEEEcCChhhh--------h
Q 002024 85 VLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGE-DHEGC-NILLTSRSQGVC--------N 152 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~-~~~~~-~iiiTtr~~~~~--------~ 152 (979)
+ .. . ...-++|+||++.... ...+...+.. ...+. .+|+|++..... +
T Consensus 85 -~-----------------~~-~-~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~s 144 (227)
T PRK08903 85 -F-----------------DF-D-PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRT 144 (227)
T ss_pred -H-----------------hh-c-ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHH
Confidence 0 00 1 2334688999975422 2222222211 12333 466666643211 1
Q ss_pred ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHH
Q 002024 153 QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRAL 212 (979)
Q Consensus 153 ~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 212 (979)
++.....+++++++.++-..++.+.+.... ..-.++....+++...|.+..+..+-..+
T Consensus 145 r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 145 RLGWGLVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHhcCeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 333347899999999887777776543211 22334578888888999888877664443
No 112
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.30 E-value=1.2e-05 Score=93.91 Aligned_cols=55 Identities=24% Similarity=0.263 Sum_probs=46.8
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 3 IITSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 3 ~~~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
.+.|...+.++|++..+.++.+.+.......+.|+|++|+||||+|+.+++....
T Consensus 147 ~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~ 201 (615)
T TIGR02903 147 LLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKK 201 (615)
T ss_pred hcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4567788889999999999998887665677999999999999999999877643
No 113
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.4e-05 Score=91.48 Aligned_cols=201 Identities=12% Similarity=0.078 Sum_probs=114.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.++.++.|..++..+.. ..+.++|+.|+||||+|+.++....-....+ + .+.+....++.+.
T Consensus 8 RP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 8 RPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 467788999999999999999987654 4568999999999999999998764211000 0 0001111111111
Q ss_pred HHhCC--cc---cc--cchHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEE-EcCChh
Q 002024 84 AVLGL--TI---CG--IEESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILL-TSRSQG 149 (979)
Q Consensus 84 ~~l~~--~~---~~--~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iii-Ttr~~~ 149 (979)
..-+. +. ++ ....+.+.++.+... .+++-++|+|+++.. ...+.+...+-.-..+..+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 10000 00 00 001111222222221 356678999999765 334444443433334555554 544444
Q ss_pred hhh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHHHHHh
Q 002024 150 VCN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVGRALK 213 (979)
Q Consensus 150 ~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l~ 213 (979)
+.. .......+++.+++.++..+.+.+.+..... .-..+.+..|++.++|-+. ++..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVDDAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 432 2223478999999999999999887643221 2224457788899999764 5555544443
No 114
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=1.2e-05 Score=92.70 Aligned_cols=203 Identities=17% Similarity=0.107 Sum_probs=115.1
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE-eccCCCHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV-VSHNLSIVKIQGEI 82 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~i 82 (979)
.|.....++|.+..+..|...+..+.. ..+.++|+.|+||||+|+.+++...-....+...|.. .....+....++.+
T Consensus 11 RP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 11 RPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 577788999999999999998876544 5578999999999999999998875322111111111 00111111222222
Q ss_pred HHHhCCccc-----ccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEE-EEcCChhh
Q 002024 83 AAVLGLTIC-----GIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEGCNIL-LTSRSQGV 150 (979)
Q Consensus 83 ~~~l~~~~~-----~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~ii-iTtr~~~~ 150 (979)
...-..+.. .....+.+..+.+.+. .+++-++|+|+++.... .+.+...+..-.....+| +|++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 111111100 0011122333333331 35666889999977532 444444333322344444 44444443
Q ss_pred hh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHH
Q 002024 151 CN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTV 208 (979)
Q Consensus 151 ~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 208 (979)
.. .......+++.+++.++....+.+.+.... ..-..+.+..+++.++|... ++..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 32 223457899999999999988887664222 11234568889999999544 44443
No 115
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.29 E-value=6.4e-06 Score=91.07 Aligned_cols=177 Identities=15% Similarity=0.153 Sum_probs=103.3
Q ss_pred CCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHH
Q 002024 10 GIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIV 76 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 76 (979)
..+.|+++.++++.+.+.. ...+-|.++|++|+|||++|+++++... .. |+.++. .
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~--~~-----~i~v~~----~ 199 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN--AT-----FIRVVG----S 199 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--CC-----EEEeeh----H
Confidence 4466999999999887631 2346688999999999999999998765 22 222211 1
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCC--CCCC
Q 002024 77 KIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGE--DHEG 138 (979)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~--~~~~ 138 (979)
+ +...... ........+.+......+.+|+|||++... + +..+...+.. ...+
T Consensus 200 ~----l~~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~ 270 (389)
T PRK03992 200 E----LVQKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGN 270 (389)
T ss_pred H----HhHhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCC
Confidence 1 1111110 112233344444444677899999997541 1 1111111111 1235
Q ss_pred cEEEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHH
Q 002024 139 CNILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTV 208 (979)
Q Consensus 139 ~~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 208 (979)
..||.||...+.... -+-...+++++.+.++..++|..+.....-..+. ....+++.+.|+ +..+..+
T Consensus 271 v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 271 VKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGASGADLKAI 344 (389)
T ss_pred EEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCCHHHHHHH
Confidence 567777765433211 1234679999999999999999887543322211 256677887775 4444433
No 116
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=2e-05 Score=88.45 Aligned_cols=185 Identities=16% Similarity=0.101 Sum_probs=109.6
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc---------------------CCC
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK---------------------RYD 62 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~---------------------~f~ 62 (979)
.|.....++|.+..++.+...+..+.. ..+.++|+.|+|||++|+.+++...... +++
T Consensus 12 RP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 12 RPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 466788899999999999999976554 5678999999999999999998764211 111
Q ss_pred eEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcE
Q 002024 63 TVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCN 140 (979)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ 140 (979)
++++......+..+ ++++.+.+. ..-..+++-++|+|+++... ..+.+...+.....+..
T Consensus 92 -~~~i~g~~~~gid~-ir~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~ 153 (451)
T PRK06305 92 -VLEIDGASHRGIED-IRQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVK 153 (451)
T ss_pred -eEEeeccccCCHHH-HHHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCce
Confidence 11111111111111 111111111 00012567788999987652 23334333333233555
Q ss_pred EEEEcC-Chhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHH
Q 002024 141 ILLTSR-SQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTV 208 (979)
Q Consensus 141 iiiTtr-~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 208 (979)
+|++|. ...+... ......+++.+++.++....+...+.... ..-..+.+..+++.++|-+. |+..+
T Consensus 154 ~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 154 FFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555553 3333221 22346899999999999998887764221 11234568889999999654 44444
No 117
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=3e-05 Score=87.55 Aligned_cols=181 Identities=14% Similarity=0.101 Sum_probs=109.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTV 64 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~ 64 (979)
.|.....++|.+..+..+...+..+.. ..+.++|+.|+||||+|+.++....... .+..+
T Consensus 11 RP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 11 RPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 566778899999999999999986543 4567899999999999999998764110 01112
Q ss_pred EEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCC
Q 002024 65 VMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEG 138 (979)
Q Consensus 65 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~ 138 (979)
+.++....... ..+..+.+... .+++-++|+|+++... ..+.+...+......
T Consensus 91 ~eidaas~~gv---------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAASNRGI---------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCccCCCH---------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 22222111111 11222222221 3567799999997652 244443333333334
Q ss_pred cEEEEEc-CChhhhh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 139 CNILLTS-RSQGVCN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 139 ~~iiiTt-r~~~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
..+|++| +...+.. .......+++.+++.++....+.+++....- ....+.+..+++.++|.+..+..
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~id~~al~~La~~s~G~lr~al~ 219 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EYEEKALDLLAQASEGGMRDAAS 219 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 4455444 4333321 1223467999999999999999887643221 22345678888999997654443
No 118
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.27 E-value=6.1e-05 Score=74.06 Aligned_cols=185 Identities=19% Similarity=0.209 Sum_probs=109.8
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE-eccCCCHHHHHHHHHHHhCCcccccchHH
Q 002024 19 VKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV-VSHNLSIVKIQGEIAAVLGLTICGIEESA 97 (979)
Q Consensus 19 l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 97 (979)
+..+...+.+ +.+++.|+|.-|+|||.++|.+..... -+.++-+. ..+..+...+...|+..+..++. .....
T Consensus 40 l~~l~~~i~d-~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~-~~~~~ 113 (269)
T COG3267 40 LLMLHAAIAD-GQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQPK-VNVNA 113 (269)
T ss_pred HHHHHHHHhc-CCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCcc-chhHH
Confidence 3333333333 346899999999999999996555443 22222233 34456788899999999887322 22222
Q ss_pred HH----HHHHHHHhcCCe-EEEEEcCCCCc--cchhhhc--CCCCCCC-CCcEEEEEcCChhhhh--------cc--CCc
Q 002024 98 RA----GYLWERIKMEKR-ILVILDDVWER--IDLQKVG--IPLGEDH-EGCNILLTSRSQGVCN--------QM--DAQ 157 (979)
Q Consensus 98 ~~----~~~~~~l~~~~~-~LlvlDd~~~~--~~~~~l~--~~~~~~~-~~~~iiiTtr~~~~~~--------~~--~~~ 157 (979)
.+ ..+..-..++++ ..+++|++++. ..++.++ ..+.... .--+|+..-.. ++.. .. +..
T Consensus 114 ~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp-~L~~~lr~~~l~e~~~R~~ 192 (269)
T COG3267 114 VLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQP-KLRPRLRLPVLRELEQRID 192 (269)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCc-ccchhhchHHHHhhhheEE
Confidence 22 333344446777 99999998754 2233321 1111111 11223322221 1111 01 112
Q ss_pred ceEEcCCCCHHHHHHHHHHHhCCCC--CCccchHHHHHHHHHcCCCchHHHHHHH
Q 002024 158 KIFIVRTLLEEESWILFREAAGTVV--ENSDLNSIAREVAAKCSGLPIAILTVGR 210 (979)
Q Consensus 158 ~~~~l~~L~~~e~~~l~~~~~~~~~--~~~~~~~~~~~i~~~~~g~Plal~~~~~ 210 (979)
..|++.|++.++...++..+..... .+...++....|.....|+|.+|+.++.
T Consensus 193 ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 193 IRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred EEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 2389999999999999987774332 2334456788899999999999998755
No 119
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.26 E-value=2e-06 Score=92.15 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=21.4
Q ss_pred CCCccEEeeeccCCcccccchhHHHhhccCceEeeecccccccee
Q 002024 688 FNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVF 732 (979)
Q Consensus 688 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 732 (979)
+.+++.|++++| .++.+|.. -++|++|.+++|.++..++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~L-----P~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVL-----PNELTEITIENCNNLTTLP 89 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCC-----CCCCcEEEccCCCCcccCC
Confidence 356666666666 45555411 1246666666666554443
No 120
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=9.3e-07 Score=68.89 Aligned_cols=59 Identities=36% Similarity=0.443 Sum_probs=42.0
Q ss_pred CCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 385 PKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 385 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
++|+.|++++|.+..++++.|..+++|++|++++ .+...-|..|..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4677788888877777777777777777777777 4542334566777777777777765
No 121
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.25 E-value=8.3e-06 Score=99.31 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=102.7
Q ss_pred CCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC---C-CeEEEEEeccCCCHHHHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR---Y-DTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~---f-~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
..+++||+++++++++.|......-+.++|++|+|||++|+.++.+...... . +..+|. + +...++ .
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~----a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLL----A 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHh----c
Confidence 4689999999999999998665556679999999999999999998753211 1 223332 1 111111 0
Q ss_pred HhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEcCChhhhh---
Q 002024 85 VLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI---------DLQKVGIPLGEDHEGCNILLTSRSQGVCN--- 152 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~---------~~~~l~~~~~~~~~~~~iiiTtr~~~~~~--- 152 (979)
+.... .+....+..+.+.+...++.+|++|+++... +...+..+.... ..-++|.+|...++..
T Consensus 249 --g~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ey~~~ie 324 (821)
T CHL00095 249 --GTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLDEYRKHIE 324 (821)
T ss_pred --cCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHHHHHHHHh
Confidence 11111 1223455666666665678999999986431 122222222222 2345665555543321
Q ss_pred ----ccCCcceEEcCCCCHHHHHHHHHHHhC---CCCCCccchHHHHHHHHHcCC
Q 002024 153 ----QMDAQKIFIVRTLLEEESWILFREAAG---TVVENSDLNSIAREVAAKCSG 200 (979)
Q Consensus 153 ----~~~~~~~~~l~~L~~~e~~~l~~~~~~---~~~~~~~~~~~~~~i~~~~~g 200 (979)
.....+.+.+...+.++...+++.... ......-.+++...+++.++|
T Consensus 325 ~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 325 KDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred cCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 112336788899999998888764321 111111223455666665553
No 122
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.5e-05 Score=91.19 Aligned_cols=196 Identities=16% Similarity=0.125 Sum_probs=115.1
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.++.++.|...+..+.. ..+.|+|+.|+|||++|+.+++......... -....+....++.+.
T Consensus 11 RP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 11 RSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 567788999999999999988876543 5668999999999999999998764211100 000111223333333
Q ss_pred HHhCCccc-----ccchHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCC-hhhh
Q 002024 84 AVLGLTIC-----GIEESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRS-QGVC 151 (979)
Q Consensus 84 ~~l~~~~~-----~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~-~~~~ 151 (979)
.....+.. .....+.+..+.+.+. .+++-++|||+++.. +..+.+...+........+|+++.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 22221110 0011122233333322 256778999999765 2344444333333345555555543 3332
Q ss_pred h-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 152 N-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 152 ~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
. .......+++.+++.++....+...+..... .-..+.+..+++.++|.+..+..
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAEN 220 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 1123367889999999999988877643221 12345688899999998764443
No 123
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=2e-05 Score=93.99 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=113.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccC---------------------CC
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKR---------------------YD 62 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~---------------------f~ 62 (979)
.|.....++|.+..++.|...+..+.. ..+.|+|+.|+||||+|+.+++.+.-... ..
T Consensus 10 RP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 10 RPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 456677899999999999999986554 55789999999999999999988752111 01
Q ss_pred eEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHH----hcCCeEEEEEcCCCCcc--chhhhcCCCCCCC
Q 002024 63 TVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERI----KMEKRILVILDDVWERI--DLQKVGIPLGEDH 136 (979)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~ 136 (979)
.+++++......+ +.+..+.++. ..+++-++|||+++... ..+.++..+..-.
T Consensus 90 dv~eidaas~~~V---------------------d~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEIDAASHGGV---------------------DDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEecccccCCH---------------------HHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 1222222111111 1112222221 13566688999998763 2444444443333
Q ss_pred CCcEEEEEc-CChhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHHHHH
Q 002024 137 EGCNILLTS-RSQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVGRAL 212 (979)
Q Consensus 137 ~~~~iiiTt-r~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~l 212 (979)
.+..+|++| ....+... ...-..|++..++.++..+.+.+.+.... .....+....|++.++|-+. ++..+-.++
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 455555544 44444322 22347899999999999999888763222 11233457788999999774 444444433
No 124
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=5e-05 Score=78.04 Aligned_cols=173 Identities=13% Similarity=0.125 Sum_probs=106.4
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+=|=++.+++|.+... -+.++=|.+|||+|+|||-||+++|++... . |+-+...
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A--t-----FIrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA--T-----FIRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc--e-----EEEeccH--
Confidence 34555677888888888764 123567889999999999999999988762 2 3333222
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------ch----hhhcCCCCC--CC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------DL----QKVGIPLGE--DH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~~----~~l~~~~~~--~~ 136 (979)
++++..-+ +....+.++.+.-....+.+|++|++|... +. -.+...+.. ..
T Consensus 220 ------ElVqKYiG-----EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 ------ELVQKYIG-----EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ------HHHHHHhc-----cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 23333221 123445555555556789999999987541 11 112222222 23
Q ss_pred CCcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 137 EGCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
..-+||..|...+.. ..-+-.+.++++.-+.+.-.++|.-++....-..+.. .+.+++.+.|.-
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd--~e~la~~~~g~s 357 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD--LELLARLTEGFS 357 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC--HHHHHHhcCCCc
Confidence 456888888765554 2224468999997777777788888886443322211 556777777653
No 125
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.18 E-value=5.9e-06 Score=84.33 Aligned_cols=92 Identities=13% Similarity=0.144 Sum_probs=63.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC--CCHHHHHHHH-----HHHhCCccccc-chHHHHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN--LSIVKIQGEI-----AAVLGLTICGI-EESARAGY 101 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~i-----~~~l~~~~~~~-~~~~~~~~ 101 (979)
....++|.|++|+|||||++.+++..... +|+.++|+.+... .++.++++.+ +.+++.+.... .....+..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 34688899999999999999999988754 8899999997776 7899999999 44444311100 00111122
Q ss_pred HHHH-HhcCCeEEEEEcCCCCc
Q 002024 102 LWER-IKMEKRILVILDDVWER 122 (979)
Q Consensus 102 ~~~~-l~~~~~~LlvlDd~~~~ 122 (979)
..+. ...+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 2222 23589999999998654
No 126
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.17 E-value=1.6e-05 Score=86.29 Aligned_cols=149 Identities=13% Similarity=0.128 Sum_probs=88.0
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|+++..+.+.+++..+.. ..+.++|++|+|||++|+.+++... . .+..++++. .... ..+..+
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--~---~~~~i~~~~-~~~~-~i~~~l 88 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--A---EVLFVNGSD-CRID-FVRNRL 88 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC--c---cceEeccCc-ccHH-HHHHHH
Confidence 466778899999999999999876543 5666799999999999999988763 1 233444443 1111 111111
Q ss_pred HHhCCcccccchHHHHHHHHHHH-hcCCeEEEEEcCCCCc--cc-hhhhcCCCCCCCCCcEEEEEcCChhhh-hc-cCCc
Q 002024 84 AVLGLTICGIEESARAGYLWERI-KMEKRILVILDDVWER--ID-LQKVGIPLGEDHEGCNILLTSRSQGVC-NQ-MDAQ 157 (979)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l-~~~~~~LlvlDd~~~~--~~-~~~l~~~~~~~~~~~~iiiTtr~~~~~-~~-~~~~ 157 (979)
..+ .... ..+.+-++|+|+++.. .+ ...+...+.....+.++|+||...... .. .+.-
T Consensus 89 ~~~----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRF----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHH----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111 0000 0134567889999765 11 222222222234566788888654211 11 1122
Q ss_pred ceEEcCCCCHHHHHHHHHH
Q 002024 158 KIFIVRTLLEEESWILFRE 176 (979)
Q Consensus 158 ~~~~l~~L~~~e~~~l~~~ 176 (979)
..+.++..+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677878888887766553
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=5.2e-05 Score=88.19 Aligned_cols=196 Identities=16% Similarity=0.077 Sum_probs=113.6
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.++.+..|...+..+. ...+.++|+.|+|||++|+.+++...-.... ... ....+....++.+.
T Consensus 11 RP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~-~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 11 RPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD-KPT----PEPCGKCELCRAIA 85 (620)
T ss_pred CCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcC-CCC----CCCCcccHHHHHHh
Confidence 45667889999999999999988654 3577899999999999999999987532111 000 01112233334443
Q ss_pred HHhCCcccc-----cchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE-EEcCChhhh
Q 002024 84 AVLGLTICG-----IEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL-LTSRSQGVC 151 (979)
Q Consensus 84 ~~l~~~~~~-----~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii-iTtr~~~~~ 151 (979)
.....+... ......+.++.+... .+++-++|+|+++... ..+.+...+..-.....+| +|+....+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 332221100 011122333333332 2556788999998653 3444443333222334444 444333333
Q ss_pred hc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 152 NQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 152 ~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
.. ...-..+++.+++.++....+...+...... -..+.+..+++.++|.+..+.
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~-is~~al~~La~~s~G~lr~A~ 220 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE-IEPEALTLVAQRSQGGLRDAE 220 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 21 2234678899999999888888766432211 223468889999999775443
No 128
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=4.6e-05 Score=88.68 Aligned_cols=185 Identities=17% Similarity=0.182 Sum_probs=112.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhc---------------------cCCC
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQES---------------------KRYD 62 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~---------------------~~f~ 62 (979)
.|.....++|.++.++.|...+..+.. ..+.++|+.|+|||++|+.++...... .+|+
T Consensus 12 RP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 12 RPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 466778899999999999999986654 557899999999999999999876411 1222
Q ss_pred eEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcE
Q 002024 63 TVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCN 140 (979)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ 140 (979)
+..++.....+..++ +.+++++...+ ..+++-++|+|+++... ..+.+...+..-..+..
T Consensus 92 -~~~ld~~~~~~vd~I-r~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ti 153 (614)
T PRK14971 92 -IHELDAASNNSVDDI-RNLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAI 153 (614)
T ss_pred -eEEecccccCCHHHH-HHHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeE
Confidence 222222222222221 12222211110 02456688999998753 34444443333234455
Q ss_pred EEE-EcCChhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHH
Q 002024 141 ILL-TSRSQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTV 208 (979)
Q Consensus 141 iii-Ttr~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~ 208 (979)
+|+ |++...+... ......+++.+++.++....+.+.+....- .-..+.+..|++.++|-.. |+..+
T Consensus 154 fIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~~~al~~La~~s~gdlr~al~~L 223 (614)
T PRK14971 154 FILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAEPEALNVIAQKADGGMRDALSIF 223 (614)
T ss_pred EEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 544 5454444422 233478999999999999999887743221 2223467889999998654 33333
No 129
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.17 E-value=0.00013 Score=78.12 Aligned_cols=202 Identities=14% Similarity=0.135 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHH-HHHHHHhhhccCCCeEEEEEeccC---CCHHHHHHHHHHHhCCcc
Q 002024 15 RKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLA-KEIGKQVQESKRYDTVVMAVVSHN---LSIVKIQGEIAAVLGLTI 90 (979)
Q Consensus 15 R~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La-~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~i~~~l~~~~ 90 (979)
|.+.+++|..||....-.+|.|+||-|+||+.|+ .++.++. +.+..++|..- .+-..++..++.++|..+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r------~~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDR------KNVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCC------CCEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 6788999999999777789999999999999999 6665443 23888888653 455677788888877531
Q ss_pred -----------------------cc--cchHHHHHHHHH-------HHh----------------------cCCeEEEEE
Q 002024 91 -----------------------CG--IEESARAGYLWE-------RIK----------------------MEKRILVIL 116 (979)
Q Consensus 91 -----------------------~~--~~~~~~~~~~~~-------~l~----------------------~~~~~Llvl 116 (979)
.+ .+.+..+..+++ .+. ...+-++||
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 00 011111111111 110 013678999
Q ss_pred cCCCCc-----------cchhhhcCCCCCCCCCcEEEEEcCChhhhhc----c--CCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 117 DDVWER-----------IDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ----M--DAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 117 Dd~~~~-----------~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~----~--~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
||+.+. .+|..... ...-.+||++|-+...... + ...+.+.+...+.+.|.++...+..
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~ 230 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLD 230 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhc
Confidence 998543 23443221 2345568888876544321 2 3447889999999999999998885
Q ss_pred CCCCC-------------------ccchHHHHHHHHHcCCCchHHHHHHHHHhcC-CChhHHHHHHH
Q 002024 180 TVVEN-------------------SDLNSIAREVAAKCSGLPIAILTVGRALKNR-NNKYVWIDAAQ 226 (979)
Q Consensus 180 ~~~~~-------------------~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~~~~~~~~ 226 (979)
..... ..........++..||=-.-+..+++.++.- ++.+..+++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 231 EDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred ccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 43110 1234557888999999999999999999864 33334444433
No 130
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=7e-08 Score=95.24 Aligned_cols=67 Identities=22% Similarity=0.274 Sum_probs=35.6
Q ss_pred cccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccch
Q 002024 745 KFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINL 815 (979)
Q Consensus 745 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l 815 (979)
..+.+||.|.|.+..--..|+.. +..-..|+.|.|+.|..++.-.. .-.+.+++.|.+|+|++|.-.
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~---iAkN~~L~~lnlsm~sG~t~n~~-~ll~~scs~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNT---IAKNSNLVRLNLSMCSGFTENAL-QLLLSSCSRLDELNLSWCFLF 273 (419)
T ss_pred HHHHhhhhccccccccCcHHHHH---HhccccceeeccccccccchhHH-HHHHHhhhhHhhcCchHhhcc
Confidence 44566777777665433333221 11334566666666666664322 334555666666666666433
No 131
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=5.3e-05 Score=87.46 Aligned_cols=192 Identities=16% Similarity=0.103 Sum_probs=110.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|+++.++.+...+..+. ...+.++|+.|+|||++|+.+++.......-+ ..+.+....++.+.
T Consensus 11 rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 11 RPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred CCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 47788899999999999999987543 46677899999999999999998764211100 00111112222222
Q ss_pred HHhCCccccc-----chHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEE-EcCChhhh
Q 002024 84 AVLGLTICGI-----EESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILL-TSRSQGVC 151 (979)
Q Consensus 84 ~~l~~~~~~~-----~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iii-Ttr~~~~~ 151 (979)
..-..+.... .....+..+.+... .+++-++|+|+++... .+..+...+..-..+..+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 1111111000 11122233333322 3567788999998652 34444433322233444444 44443333
Q ss_pred hc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 152 NQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 152 ~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
.. .+....+++.+++.++....+...+....- .-..+.+..|++.++|-+..
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 21 223467889999999999998887742221 12245678888898886653
No 132
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=0.00024 Score=75.69 Aligned_cols=195 Identities=14% Similarity=0.094 Sum_probs=111.7
Q ss_pred CCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------CCCeEEEEEeccCCC
Q 002024 9 KGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESK-------------RYDTVVMAVVSHNLS 74 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------~f~~~~~~~~~~~~~ 74 (979)
...++|.++..+.+...+..+.. ....++|+.|+||+++|..+++..-... ....+.|+.-....+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~ 82 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQ 82 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecccccc
Confidence 35689999999999999986653 7889999999999999999998764221 123344543211111
Q ss_pred HHHHHHHHHHHhCC--cccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcC
Q 002024 75 IVKIQGEIAAVLGL--TICGIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSR 146 (979)
Q Consensus 75 ~~~~~~~i~~~l~~--~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr 146 (979)
....-..-++..+. .....-..+.+..+.+.+. .+++-++|+|+++.... .+.+...+-.-....-|++|+.
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~ 162 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPS 162 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence 00000011111110 0000001123344444443 36677899999976532 3333222211123334445554
Q ss_pred Chhhhhc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 147 SQGVCNQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 147 ~~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
...+... .+.-+.+++.+++.++..+.+.+....... +.....++..++|.|.....
T Consensus 163 ~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~----~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 163 PESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEIL----NINFPELLALAQGSPGAAIA 220 (314)
T ss_pred hHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccc----hhHHHHHHHHcCCCHHHHHH
Confidence 4444322 233488999999999999999987532111 11246789999999975544
No 133
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.15 E-value=3.6e-05 Score=94.13 Aligned_cols=159 Identities=13% Similarity=0.144 Sum_probs=94.7
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEeccCCCHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-----YDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~ 80 (979)
+....+++||++++.++++.|......-+.++|++|+|||++|+.++++...... ...++.++.+ .+..
T Consensus 169 ~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a 242 (852)
T TIGR03346 169 EGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA 242 (852)
T ss_pred CCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh
Confidence 4456789999999999999998666566779999999999999999998753211 1223333221 1110
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIK-MEKRILVILDDVWERI---------DLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~---------~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
+.... .+....+..+.+.+. .+++.+|++|+++... +...+..+.... ...++|.+|...++
T Consensus 243 ------~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 ------GAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTLDEY 314 (852)
T ss_pred ------cchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcHHHH
Confidence 00001 112234455555553 2468999999997542 122222222222 23345555544433
Q ss_pred hh-------ccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 151 CN-------QMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 151 ~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
.. ..+.-+.+.++..+.++...++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 11 11223578899999999999887654
No 134
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.15 E-value=2e-05 Score=82.56 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=80.1
Q ss_pred CchhHHHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 11 IFESRKSIVKQLLEALN---------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~---------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
.++|.+...++|.+... .+...-+.++|++|+|||++|+.+++............++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 46777777766654321 123355779999999999999999987642221111122322211
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------chhhhcCCCCCCCCCcEEEEEc
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------DLQKVGIPLGEDHEGCNILLTS 145 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------~~~~l~~~~~~~~~~~~iiiTt 145 (979)
++.. ..++ .. ......+.++ ...-+|++|+++... ....+...+........+|+++
T Consensus 84 -~l~~---~~~g-----~~-~~~~~~~~~~---a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVG---EYIG-----HT-AQKTREVIKK---ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhh---hhcc-----ch-HHHHHHHHHh---ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 1111 1111 01 1122222222 223488999997532 2233333222222333455555
Q ss_pred CChhh----------hhccCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 146 RSQGV----------CNQMDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 146 r~~~~----------~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
...+. ..+ ....+++++++.+|..+++.+.+.
T Consensus 151 ~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHH
Confidence 43322 122 235689999999999999988775
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=5.2e-05 Score=87.09 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=110.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.+..++.|...+..+.. ..+.++|+.|+|||++|+.+++.......... .+.+.....+.+.
T Consensus 11 RP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~ 83 (563)
T PRK06647 11 RPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSID 83 (563)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHH
Confidence 467788899999999999999976544 56789999999999999999987642111000 0000001111111
Q ss_pred HHhCCcc---ccc--chHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCC-hhhh
Q 002024 84 AVLGLTI---CGI--EESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRS-QGVC 151 (979)
Q Consensus 84 ~~l~~~~---~~~--~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~-~~~~ 151 (979)
..-..+. .+. .....+..+.+.+. .+++-++|+|+++... .++.+...+..-.....+|.+|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 1100000 000 01111222222111 3566789999998653 345554444333345555555543 3332
Q ss_pred hc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH
Q 002024 152 NQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 152 ~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
.. ......+++.+++.++..+.+.+.+.... ..-..+.+..|++.++|-+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~a 217 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDA 217 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 21 22346789999999999999988774322 2223456888999999977543
No 136
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.6e-07 Score=91.30 Aligned_cols=41 Identities=17% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccc
Q 002024 687 SFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASL 728 (979)
Q Consensus 687 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 728 (979)
.+|+|.+|++++|-.+++ .....+-.++.|++|.++.|..+
T Consensus 311 rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i 351 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI 351 (419)
T ss_pred hCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC
Confidence 567888888888877776 33344667788888888888754
No 137
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.10 E-value=2.6e-06 Score=66.33 Aligned_cols=55 Identities=33% Similarity=0.585 Sum_probs=26.0
Q ss_pred CCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccc-hhhccCccccEEecCCC
Q 002024 433 DLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIP-ETFCRLSHLWLLDLDHC 487 (979)
Q Consensus 433 ~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c 487 (979)
+|++|++++|+++.+ ..+.++++|++|++++|.+..+| ..|.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 444555555544444 23444455555555544444443 24445555555555443
No 138
>PLN03150 hypothetical protein; Provisional
Probab=98.10 E-value=7.9e-06 Score=96.34 Aligned_cols=102 Identities=24% Similarity=0.376 Sum_probs=68.2
Q ss_pred ccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCC-CC-ccccCCcCCcEEEcccCcCc-ccchhhccCccccEEecCC
Q 002024 411 LKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLG-DL-SVIGELSNLEILSLCRSSIK-EIPETFCRLSHLWLLDLDH 486 (979)
Q Consensus 411 L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~-~l-~~i~~L~~L~~L~Ls~~~l~-~lp~~i~~L~~L~~L~l~~ 486 (979)
++.|+|++ .+...+|..+..+++|++|+|++|.+. .+ +.++.+++|++|+|++|.+. .+|..+++|++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 56667766 555566777777777777777777664 33 35677777777777777776 5677777777777777777
Q ss_pred CCCccccCcchhcc-CcCCcEEEcccCc
Q 002024 487 CRQLALIPHGVISQ-LDKLEEFYMWNTF 513 (979)
Q Consensus 487 c~~~~~~p~~~l~~-L~~L~~L~l~~~~ 513 (979)
|.....+|.. +.. +.++..+++.+|.
T Consensus 500 N~l~g~iP~~-l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAA-LGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChH-HhhccccCceEEecCCc
Confidence 7655566765 333 3455666666553
No 139
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=4.5e-05 Score=88.57 Aligned_cols=198 Identities=17% Similarity=0.138 Sum_probs=111.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.++.+..|...+..+.. ..+.++|+.|+|||++|+.+++...-....+. .+.+....++.|.
T Consensus 11 RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 11 RPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred CCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 467788999999999999999876654 56689999999999999999987642111000 0000111111111
Q ss_pred HHhCCcc---cc--cchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE-EEcCChhhh
Q 002024 84 AVLGLTI---CG--IEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL-LTSRSQGVC 151 (979)
Q Consensus 84 ~~l~~~~---~~--~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii-iTtr~~~~~ 151 (979)
..-..+. .+ ....+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-..+..+| +||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 1000000 00 000112222322222 2556688999997653 2444433332223345555 455444443
Q ss_pred hc-cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHHHHHH
Q 002024 152 NQ-MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAILTVGR 210 (979)
Q Consensus 152 ~~-~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~~~~~ 210 (979)
.. .+.-..+++.+++.++....+...+....- .-..+.+..|++.++|-. .++..+-.
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i~~~al~~la~~a~G~lr~al~~Ldq 223 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SISDAALALVARKGDGSMRDSLSTLDQ 223 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22 223467889999999999888876643221 123456788999999854 45555533
No 140
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.09 E-value=1.1e-05 Score=85.47 Aligned_cols=91 Identities=11% Similarity=0.128 Sum_probs=62.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC--CHHHHHHHHHHHhCCcccccchHHH------HHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL--SIVKIQGEIAAVLGLTICGIEESAR------AGYL 102 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~------~~~~ 102 (979)
.+.++|+|++|+||||||+++++....+ +|+.++|+.+.... .+.++++.+...+-....+.....+ +...
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~ 247 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEK 247 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999999988765 89999999998886 6777777776332211111111111 1122
Q ss_pred HHHH-hcCCeEEEEEcCCCCc
Q 002024 103 WERI-KMEKRILVILDDVWER 122 (979)
Q Consensus 103 ~~~l-~~~~~~LlvlDd~~~~ 122 (979)
.+++ ..+++.+|++|++...
T Consensus 248 Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 248 AKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHcCCCEEEEEEChHHH
Confidence 2222 3689999999998643
No 141
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.09 E-value=4.6e-05 Score=92.69 Aligned_cols=159 Identities=13% Similarity=0.114 Sum_probs=94.2
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEeccCCCHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-----YDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~ 80 (979)
+....+++||++++.++++.|......-+.++|++|+|||++|+.++........ -..+++++.+.- ..
T Consensus 174 ~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a 247 (857)
T PRK10865 174 QGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA 247 (857)
T ss_pred cCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh
Confidence 4456889999999999999998766667779999999999999999998753211 123334333221 00
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIK-MEKRILVILDDVWERI---------DLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~---------~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
+.... ......+..+.+.+. .+.+.+|++|+++... +...+..+....+ ..++|-+|...+.
T Consensus 248 ------g~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e~ 319 (857)
T PRK10865 248 ------GAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDEY 319 (857)
T ss_pred ------ccchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHHH
Confidence 00000 111233444444443 3578999999987542 1222333332222 3455555554432
Q ss_pred h-------hccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 151 C-------NQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 151 ~-------~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
. ...+.-+.+.+...+.++...+++...
T Consensus 320 r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 320 RQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 1 011122467777778999999886554
No 142
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.07 E-value=2.9e-05 Score=92.01 Aligned_cols=157 Identities=15% Similarity=0.189 Sum_probs=93.6
Q ss_pred CCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcc-C---CCeEEEEEeccCCCHHHHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESK-R---YDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~-~---f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
..+++||++++.++.+.|......-+.++|++|+|||++|+.+++...... . .+..+|.. +...+ ++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l---la- 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL---LA- 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH---hc-
Confidence 468999999999999998865445667899999999999999998764322 1 12333321 11111 10
Q ss_pred HhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc----------cchhhhcCCCCCCCCCcEEEEEcCChhhhh--
Q 002024 85 VLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER----------IDLQKVGIPLGEDHEGCNILLTSRSQGVCN-- 152 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~----------~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~-- 152 (979)
+.... .+.......+.+.+.+..+.+|++|+++.. .+...+..++.. ....++|-+|...++..
T Consensus 256 --G~~~~-Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~ 331 (758)
T PRK11034 256 --GTKYR-GDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIF 331 (758)
T ss_pred --ccchh-hhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHh
Confidence 11111 122334455555555566789999999743 112222222222 22344555554433211
Q ss_pred -----ccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 153 -----QMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 153 -----~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
..+.-+.+++++.+.+++.+++....
T Consensus 332 ~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 332 EKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11223679999999999999998654
No 143
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.06 E-value=9.4e-05 Score=83.06 Aligned_cols=159 Identities=16% Similarity=0.149 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
..+.|+|+.|+|||.|++++++....+..-..++++++. ++...+...+... ......+.+. ..
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSE------KFTNDFVNALRNN--------KMEEFKEKYR--SV 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHH------HHHHHHHHHHHcC--------CHHHHHHHHH--hC
Confidence 568899999999999999999988744333456777543 3344444444321 1122333332 23
Q ss_pred EEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEcCC-hh--------hhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002024 112 ILVILDDVWERID----LQKVGIPLGE-DHEGCNILLTSRS-QG--------VCNQMDAQKIFIVRTLLEEESWILFREA 177 (979)
Q Consensus 112 ~LlvlDd~~~~~~----~~~l~~~~~~-~~~~~~iiiTtr~-~~--------~~~~~~~~~~~~l~~L~~~e~~~l~~~~ 177 (979)
-+|||||++.... .+.+...+.. ...+..+|+|+.. .. +.+++.....+++++.+.++...++.+.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 4788999975321 1112111111 1234557777753 21 2233444468999999999999999988
Q ss_pred hCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 178 AGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
+.... ..-.++++..|++.+.|....+.-
T Consensus 281 ~~~~~-~~l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 281 AEEEG-LELPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHcC-CCCCHHHHHHHHHhcCCCHHHHHH
Confidence 86432 222356788888888887665443
No 144
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.04 E-value=6.1e-05 Score=85.61 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=97.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
...++|+|++|+|||+|++++++....+..-..++++++. ++...+...+... ......+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 3568899999999999999999998744334456677553 3333444443211 1122333333 3
Q ss_pred eEEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEcCCh---------hhhhccCCcceEEcCCCCHHHHHHHHHH
Q 002024 111 RILVILDDVWERID----LQKVGIPLGE-DHEGCNILLTSRSQ---------GVCNQMDAQKIFIVRTLLEEESWILFRE 176 (979)
Q Consensus 111 ~~LlvlDd~~~~~~----~~~l~~~~~~-~~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~L~~~e~~~l~~~ 176 (979)
.-+|||||++.... .+.+...+.. ...|..+|+|+... .+.+++.....+++++.+.++...++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 44888999975311 1122111111 11344577777542 1224445557899999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 177 AAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
.+... ...-.++++..|++.+.|-...+.
T Consensus 292 ~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 292 KAEEE-GIDLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHc-CCCCCHHHHHHHHcCcCCCHHHHH
Confidence 88532 222345678889999988766544
No 145
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.04 E-value=5.2e-05 Score=84.99 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=92.3
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcc---CCCeEEEEEecc
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESK---RYDTVVMAVVSH 71 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~---~f~~~~~~~~~~ 71 (979)
....+.|.+..++++.+.+. -...+-+.++||+|+|||++|+++++...... ......|+.+..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 45667789999999887753 11345688999999999999999999875321 122344554433
Q ss_pred CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHH----HhcCCeEEEEEcCCCCcc---------c-----hhhhcCCCC
Q 002024 72 NLSIVKIQGEIAAVLGLTICGIEESARAGYLWER----IKMEKRILVILDDVWERI---------D-----LQKVGIPLG 133 (979)
Q Consensus 72 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~----l~~~~~~LlvlDd~~~~~---------~-----~~~l~~~~~ 133 (979)
.. ++.... +. ....+..+.+. ...+++.+++||+++... + +..+...+.
T Consensus 260 ~e--------Ll~kyv----Ge-te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 260 PE--------LLNKYV----GE-TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred hh--------hccccc----ch-HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 21 111110 00 01112222222 223678999999997531 1 112222221
Q ss_pred C--CCCCcEEEEEcCChhhhh-----ccCCcceEEcCCCCHHHHHHHHHHHhCC
Q 002024 134 E--DHEGCNILLTSRSQGVCN-----QMDAQKIFIVRTLLEEESWILFREAAGT 180 (979)
Q Consensus 134 ~--~~~~~~iiiTtr~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~ 180 (979)
. ...+..||.||...+... .-+-...++++..+.++..++|..+...
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 123445566665543332 1123467999999999999999998753
No 146
>PLN03150 hypothetical protein; Provisional
Probab=98.02 E-value=1e-05 Score=95.44 Aligned_cols=79 Identities=25% Similarity=0.355 Sum_probs=36.7
Q ss_pred CCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCc-ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcc
Q 002024 434 LRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIK-EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMW 510 (979)
Q Consensus 434 L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~-~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~ 510 (979)
++.|+|++|.+... +.++.+++|++|+|++|.+. .+|..++.+++|+.|++++|.....+|.. +++|++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEECc
Confidence 34444544444322 23444555555555555444 44444555555555555554433334443 4455555555554
Q ss_pred cCc
Q 002024 511 NTF 513 (979)
Q Consensus 511 ~~~ 513 (979)
+|.
T Consensus 499 ~N~ 501 (623)
T PLN03150 499 GNS 501 (623)
T ss_pred CCc
Confidence 443
No 147
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.02 E-value=9.3e-05 Score=83.11 Aligned_cols=161 Identities=16% Similarity=0.129 Sum_probs=98.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
...++|+|++|+|||.|+.++++.......-..++|++. .++...+...+... ......++.. ..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~--------~~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG--------KLNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc--------cHHHHHHHHH-hc
Confidence 346899999999999999999998764333346778765 34555555554321 1112222332 34
Q ss_pred eEEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEcC-Chhh--------hhccCCcceEEcCCCCHHHHHHHHHH
Q 002024 111 RILVILDDVWERID----LQKVGIPLGE-DHEGCNILLTSR-SQGV--------CNQMDAQKIFIVRTLLEEESWILFRE 176 (979)
Q Consensus 111 ~~LlvlDd~~~~~~----~~~l~~~~~~-~~~~~~iiiTtr-~~~~--------~~~~~~~~~~~l~~L~~~e~~~l~~~ 176 (979)
.-+|++||++.... .+.+...+.. ...|..||+||. .+.. .+++.....+++++.+.+.-..++.+
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 45788999974311 1122111111 123456888774 3221 13344556889999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 177 AAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
.+.... ..-.++++..|++...|....+.-
T Consensus 275 ~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g 304 (440)
T PRK14088 275 MLEIEH-GELPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_pred HHHhcC-CCCCHHHHHHHHhccccCHHHHHH
Confidence 875322 222356788888888886555543
No 148
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.00 E-value=0.00012 Score=80.37 Aligned_cols=179 Identities=11% Similarity=0.136 Sum_probs=103.1
Q ss_pred CCCCchhHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN----N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+.|-+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++... ..| +.+..+
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~--~~f---i~i~~s---- 213 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT--ATF---IRVVGS---- 213 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE---EEEehH----
Confidence 44567788888888877653 1 2346788999999999999999998764 222 122111
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCC--CC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGE--DH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~--~~ 136 (979)
. +...... .....+..+.+......+.+|++|+++... . +..+...+.. ..
T Consensus 214 --~----l~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 214 --E----FVQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred --H----HHHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1 1111110 112233444444445778999999986431 0 1111111111 22
Q ss_pred CCcEEEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHH
Q 002024 137 EGCNILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTV 208 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 208 (979)
.+..||+||...+.... .+-...++++..+.++..++|........-..+. ....+++.+.|+ |.-|..+
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCCHHHHHHH
Confidence 45667888875543321 1335679999999999999998777543322211 256677777775 4434433
No 149
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.96 E-value=4.9e-05 Score=83.99 Aligned_cols=172 Identities=13% Similarity=0.113 Sum_probs=99.8
Q ss_pred CCCCchhHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN----N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+.|.++.+++|.+.+. . ...+-+.++|++|+|||++|+.+++... ..| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--ATF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--CCE-----EEEecc--
Confidence 34567899999998887763 1 2345688999999999999999999765 233 222111
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------------hhhhcCCCCC--CC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------------LQKVGIPLGE--DH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------------~~~l~~~~~~--~~ 136 (979)
+ +...... .....+..+.+....+.+.+++||+++.... +..+...+.. ..
T Consensus 252 --e----L~~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 252 --E----LIQKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred --h----hhhhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 1 1111110 0112233344444446788999999753210 1111111111 13
Q ss_pred CCcEEEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 137 EGCNILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
.+.+||+||...+.... .+....++++..+.++..++|..+.....-..+. ....++..+.|+
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~ 388 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDEL 388 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCC
Confidence 35678888875544322 1235789999999999999999887543321111 145566666664
No 150
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.95 E-value=1.5e-05 Score=85.65 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=82.9
Q ss_pred cccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhccc
Q 002024 745 KFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEM 824 (979)
Q Consensus 745 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 824 (979)
..+++++.|++++| .++.+.. -.++|+.|.+.+|.+|+.+ |+.+ .++|+.|++++|.++..+
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP~------LP~sLtsL~Lsnc~nLtsL---P~~L--P~nLe~L~Ls~Cs~L~sL------ 110 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLPV------LPNELTEITIENCNNLTTL---PGSI--PEGLEKLTVCHCPEISGL------ 110 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccCC------CCCCCcEEEccCCCCcccC---Cchh--hhhhhheEccCccccccc------
Confidence 33577888888888 5665542 2346888888888888766 3323 357888888888766543
Q ss_pred ccccCCCCCccccCCccEEEEec--CCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccc
Q 002024 825 MRKNSQPTTSQGLQNLTTINIQS--CSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFE 902 (979)
Q Consensus 825 ~~~~~~~~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 902 (979)
| ++|++|++.+ |..+..+ .++|+.|.+.++........ ....+++|+.
T Consensus 111 ------P------~sLe~L~L~~n~~~~L~~L--------PssLk~L~I~~~n~~~~~~l----------p~~LPsSLk~ 160 (426)
T PRK15386 111 ------P------ESVRSLEIKGSATDSIKNV--------PNGLTSLSINSYNPENQARI----------DNLISPSLKT 160 (426)
T ss_pred ------c------cccceEEeCCCCCcccccC--------cchHhheecccccccccccc----------ccccCCcccE
Confidence 2 3577777753 2223332 24567777644321111100 0124678999
Q ss_pred cccccCccccccccCCceeeccccceeeeccCC
Q 002024 903 MELRNLDSLTCFCSGQFLIEFPALEMLTIAECP 935 (979)
Q Consensus 903 L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 935 (979)
|.+++|..+ .+|.. . .++|+.|++..+.
T Consensus 161 L~Is~c~~i-~LP~~-L---P~SLk~L~ls~n~ 188 (426)
T PRK15386 161 LSLTGCSNI-ILPEK-L---PESLQSITLHIEQ 188 (426)
T ss_pred EEecCCCcc-cCccc-c---cccCcEEEecccc
Confidence 999888855 34432 2 2688888887753
No 151
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=0.00018 Score=82.77 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=106.8
Q ss_pred CCchhHHH---HHHHHHHHhcCC------C---ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHH
Q 002024 10 GIFESRKS---IVKQLLEALNNE------N---VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVK 77 (979)
Q Consensus 10 ~~~vgR~~---~l~~l~~~l~~~------~---~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 77 (979)
..+.|-++ |+.++++.|.++ + ++=+.++||+|+|||-||+++|-+..+- |++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH-----
Confidence 34455554 555556666533 1 3557799999999999999999877632 4444433
Q ss_pred HHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-----------------hhhhcCCCCCCC--CC
Q 002024 78 IQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-----------------LQKVGIPLGEDH--EG 138 (979)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-----------------~~~l~~~~~~~~--~~ 138 (979)
+..+.+.. ....++..+...-+.+.+.++.+|+++...- ++.+...+.... .+
T Consensus 379 ---EFvE~~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 ---EFVEMFVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred ---HHHHHhcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 11222211 1134556666666678899999999864311 222322222222 23
Q ss_pred cEEEEEcCChhhhh-----ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH
Q 002024 139 CNILLTSRSQGVCN-----QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 139 ~~iiiTtr~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
-.++-+|+..++.. .-+-++.+.++.-+..+..++|.-++.......+..++.. ++..+-|++=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 33445666555542 2234578889999999999999998865554444455555 999998887543
No 152
>PRK06620 hypothetical protein; Validated
Probab=97.93 E-value=6.4e-05 Score=75.46 Aligned_cols=157 Identities=13% Similarity=0.027 Sum_probs=89.2
Q ss_pred CCCchhH-HH-HHHHHHHHhcCCC--c--eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHH
Q 002024 9 KGIFESR-KS-IVKQLLEALNNEN--V--SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 9 ~~~~vgR-~~-~l~~l~~~l~~~~--~--~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i 82 (979)
...++|. .+ ....+.++-...+ . +.+.|+|++|+|||+|++.+++.... .++.... .
T Consensus 16 d~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~~~~--~-------- 78 (214)
T PRK06620 16 DEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIKDIF--F-------- 78 (214)
T ss_pred hhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-------EEcchhh--h--------
Confidence 3345565 22 3444555443211 1 56899999999999999998765531 1211000 0
Q ss_pred HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCC-CCCCcEEEEEcCCh-------hhhhcc
Q 002024 83 AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGE-DHEGCNILLTSRSQ-------GVCNQM 154 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~-~~~~~~iiiTtr~~-------~~~~~~ 154 (979)
. . +.. +..-++++||++...+ ..+...++. ...|..+|+|++.. ++.+++
T Consensus 79 -----------~-----~---~~~--~~~d~lliDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl 136 (214)
T PRK06620 79 -----------N-----E---EIL--EKYNAFIIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRI 136 (214)
T ss_pred -----------c-----h---hHH--hcCCEEEEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHH
Confidence 0 0 001 1234678899975432 111111111 13466788888742 223444
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHH
Q 002024 155 DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 155 ~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
...-++++++++.++...++.+.+... .-.-.+++++-|++.+.|--..+
T Consensus 137 ~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 137 KSVLSILLNSPDDELIKILIFKHFSIS-SVTISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred hCCceEeeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHccCCHHHH
Confidence 555689999999999888888777532 12223466777888777654433
No 153
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.92 E-value=6.4e-05 Score=86.70 Aligned_cols=197 Identities=10% Similarity=0.081 Sum_probs=106.2
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE---eccCCCHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNN-----ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV---VSHNLSIV 76 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~-----~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~---~~~~~~~~ 76 (979)
.|.....++|.++.++++..++.. ...+++.|+|++|+||||+++.++..... +..-|.. +....+..
T Consensus 79 rP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~----~~~Ew~npv~~~~~~~~~ 154 (637)
T TIGR00602 79 KPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI----QVQEWSNPTLPDFQKNDH 154 (637)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh----HHHHHhhhhhhccccccc
Confidence 467788899999999999998863 23467999999999999999999986542 1112221 00011111
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHH----------hcCCeEEEEEcCCCCcc-----chhhhcC-CCCCCCCCcE
Q 002024 77 KIQGEIAAVLGLTICGIEESARAGYLWERI----------KMEKRILVILDDVWERI-----DLQKVGI-PLGEDHEGCN 140 (979)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l----------~~~~~~LlvlDd~~~~~-----~~~~l~~-~~~~~~~~~~ 140 (979)
.....+.+++...... ......+.... ..+++.+|+||+++..- .+..+.. .+...+.-..
T Consensus 155 ~~~~s~~~~~~~~~s~---~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pL 231 (637)
T TIGR00602 155 KVTLSLESCFSNFQSQ---IEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPL 231 (637)
T ss_pred ccchhhhhccccccch---HHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceE
Confidence 1112222222221111 11111111111 12567899999995432 2333322 2222222234
Q ss_pred EEEEcCChh---------hh-------hcc--CCcceEEcCCCCHHHHHHHHHHHhCCCCC---C---ccchHHHHHHHH
Q 002024 141 ILLTSRSQG---------VC-------NQM--DAQKIFIVRTLLEEESWILFREAAGTVVE---N---SDLNSIAREVAA 196 (979)
Q Consensus 141 iiiTtr~~~---------~~-------~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~---~---~~~~~~~~~i~~ 196 (979)
|+|+|.... +. ... .....+++.+++..+..+.+.+.+..... . ....+....|+.
T Consensus 232 I~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~ 311 (637)
T TIGR00602 232 VFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ 311 (637)
T ss_pred EEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH
Confidence 555663211 10 001 12356899999999988888777643211 1 112356777777
Q ss_pred HcCC-CchHHHHH
Q 002024 197 KCSG-LPIAILTV 208 (979)
Q Consensus 197 ~~~g-~Plal~~~ 208 (979)
.++| +--||..+
T Consensus 312 ~s~GDiRsAIn~L 324 (637)
T TIGR00602 312 GCSGDIRSAINSL 324 (637)
T ss_pred hCCChHHHHHHHH
Confidence 7776 45555554
No 154
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=2.4e-06 Score=96.20 Aligned_cols=187 Identities=25% Similarity=0.296 Sum_probs=110.2
Q ss_pred CCccEEEccCCcccc-cCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCC
Q 002024 363 EDLTGISLMSNYIHE-VPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLED 441 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~ 441 (979)
..+..+.+..|.+.. ......+.+++.|++..|.+..+... +..+.+|++|+|+++....+. .+..+..|+.|++.+
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG 149 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheecccccccccc-chhhccchhhheecc
Confidence 334444455565555 22345667777777777777766542 456777777777774442332 456666788888888
Q ss_pred CCCCCCccccCCcCCcEEEcccCcCcccchh-hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 442 CYLGDLSVIGELSNLEILSLCRSSIKEIPET-FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 442 ~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
|.+..++.+..+.+|+.+++++|.+..+... ...+.+|+.+.+.++. +..+.. +..+..+..+++..+..
T Consensus 150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i------ 220 (414)
T KOG0531|consen 150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKI------ 220 (414)
T ss_pred CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccc------
Confidence 8777777777778888888888777766543 4677777777777743 332222 33333343333333321
Q ss_pred ccchhccccccc--cceecccccCCcCC-CCCCCCCCCCeEEEE
Q 002024 521 NAKVVELQALTR--LTNLMFHFPQNSIL-PSHMPFQHLPNFTIA 561 (979)
Q Consensus 521 ~~~~~~l~~l~~--L~~L~l~~~~~~~~-~~~~~~~~L~~L~i~ 561 (979)
..+..+..+.. |+.+++.++..... .....+.++..|.+.
T Consensus 221 -~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~ 263 (414)
T KOG0531|consen 221 -SKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLS 263 (414)
T ss_pred -eeccCcccchhHHHHHHhcccCccccccccccccccccccchh
Confidence 12222333333 77777777776655 344555555555543
No 155
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.00015 Score=82.35 Aligned_cols=159 Identities=16% Similarity=0.120 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
..++|+|..|+|||.|+.++++..........++|++. .++...+...+.. .....+.+++. ..
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~--------~~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD--------GKGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh--------ccHHHHHHHhh--cC
Confidence 45899999999999999999998764333456777754 3344444433321 11122223332 23
Q ss_pred EEEEEcCCCCccc---h-hhhcCCCCC-CCCCcEEEEEcCCh---------hhhhccCCcceEEcCCCCHHHHHHHHHHH
Q 002024 112 ILVILDDVWERID---L-QKVGIPLGE-DHEGCNILLTSRSQ---------GVCNQMDAQKIFIVRTLLEEESWILFREA 177 (979)
Q Consensus 112 ~LlvlDd~~~~~~---~-~~l~~~~~~-~~~~~~iiiTtr~~---------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~ 177 (979)
=+|||||++.... + +.+...++. ...+..||||++.. .+.+++...-.++|++.+.+.-..++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 5788999975421 1 112111211 12355688888742 23355566789999999999999999988
Q ss_pred hCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 178 AGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
+.... -.-.++++.-|++...+....|.-
T Consensus 459 a~~r~-l~l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 459 AVQEQ-LNAPPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHhcC-CCCCHHHHHHHHHhccCCHHHHHH
Confidence 85432 222356777788877765544443
No 156
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.90 E-value=5.1e-05 Score=81.12 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=62.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC--CCHHHHHHHHHHHhCCcccccchH---H---HHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN--LSIVKIQGEIAAVLGLTICGIEES---A---RAGYL 102 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~---~---~~~~~ 102 (979)
...++|+|++|+|||||++.+++....+ +|+..+|+.+.+. ..+.++++.+...+-...-+.+.. . .+.+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~ 246 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK 246 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence 4678999999999999999999988754 7888889998866 788999999843332211111111 1 11122
Q ss_pred HHHH-hcCCeEEEEEcCCCCc
Q 002024 103 WERI-KMEKRILVILDDVWER 122 (979)
Q Consensus 103 ~~~l-~~~~~~LlvlDd~~~~ 122 (979)
.+++ ..|++.+|++|++...
T Consensus 247 Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 247 AKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHcCCCeEEEEEChhHH
Confidence 2222 3689999999999654
No 157
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.88 E-value=0.00016 Score=76.28 Aligned_cols=132 Identities=10% Similarity=0.077 Sum_probs=71.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeE
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRI 112 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (979)
-+.|+|++|+|||++|+.+++...........-++.++. .+ +...+... .. .....+.+. ...-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~----~~-~~~~~~~~~---a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGH----TA-PKTKEILKR---AMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhccc----ch-HHHHHHHHH---ccCc
Confidence 477999999999999999988765332222112333331 12 22222111 11 112223332 2335
Q ss_pred EEEEcCCCCc-----------cchhhhcCCCCCCCCCcEEEEEcCChhhhhc--c------CCcceEEcCCCCHHHHHHH
Q 002024 113 LVILDDVWER-----------IDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ--M------DAQKIFIVRTLLEEESWIL 173 (979)
Q Consensus 113 LlvlDd~~~~-----------~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~--~------~~~~~~~l~~L~~~e~~~l 173 (979)
+|+||+++.. +....+...+.....+.+||+++........ . +-...+++++++.+|...+
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8889999732 1122333333233345566666653322110 0 1246799999999999999
Q ss_pred HHHHhCC
Q 002024 174 FREAAGT 180 (979)
Q Consensus 174 ~~~~~~~ 180 (979)
+...+..
T Consensus 204 ~~~~l~~ 210 (284)
T TIGR02880 204 AGLMLKE 210 (284)
T ss_pred HHHHHHH
Confidence 9887743
No 158
>CHL00176 ftsH cell division protein; Validated
Probab=97.87 E-value=0.00046 Score=80.45 Aligned_cols=178 Identities=15% Similarity=0.163 Sum_probs=102.2
Q ss_pred CCCCchhHHHHHHHHHHHh---cCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 8 SKGIFESRKSIVKQLLEAL---NNE---------NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l---~~~---------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
....+.|.++..+++.+.+ ... ..+-|.++|++|+|||++|+.++..... . ++.++.
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~--p-----~i~is~---- 249 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV--P-----FFSISG---- 249 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-----eeeccH----
Confidence 3456778877777766554 221 1345889999999999999999987642 2 222221
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCC--CCC
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGE--DHE 137 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~--~~~ 137 (979)
.++... ..+ . .......+.+....+.+.+|++||++... + +..+...+.. ...
T Consensus 250 s~f~~~---~~g-----~-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 250 SEFVEM---FVG-----V-GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred HHHHHH---hhh-----h-hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 111110 001 0 11233444444555788999999996431 1 2222222211 234
Q ss_pred CcEEEEEcCChhhhh-----ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHH
Q 002024 138 GCNILLTSRSQGVCN-----QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILT 207 (979)
Q Consensus 138 ~~~iiiTtr~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~ 207 (979)
+..||.||...+... .-+-...+.++..+.++-.++++.++..... ........+++.+.|. +..|..
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~--~~d~~l~~lA~~t~G~sgaDL~~ 394 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL--SPDVSLELIARRTPGFSGADLAN 394 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc--chhHHHHHHHhcCCCCCHHHHHH
Confidence 556676776543321 1123478899999999999999988864221 1223467788888873 444443
No 159
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.87 E-value=0.00024 Score=81.86 Aligned_cols=179 Identities=15% Similarity=0.165 Sum_probs=101.4
Q ss_pred CCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 8 SKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
....++|-++..+++.+.+. ....+-+.++||+|+|||++|+.++..... . ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~--~-----~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--P-----FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--C-----eeeccH----
Confidence 44567788877766655442 112345889999999999999999987642 2 222221
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------------hhhhcCCCC--CCCC
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------------LQKVGIPLG--EDHE 137 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------------~~~l~~~~~--~~~~ 137 (979)
.++... ..+. .......+.+......+.+|+|||++.... +..+...+. ....
T Consensus 122 ~~~~~~---~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVEM---FVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHHH---Hhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111111 0110 122334444444446778999999965310 111211111 1223
Q ss_pred CcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHH
Q 002024 138 GCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTV 208 (979)
Q Consensus 138 ~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 208 (979)
+..||.||...+.. ...+-...++++..+.++..+++..+........ ......+++.+.|+ +..|..+
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCCHHHHHHH
Confidence 44566667654322 2123457899999999999999988875432221 12356888888884 4555544
No 160
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.85 E-value=0.00038 Score=72.28 Aligned_cols=165 Identities=15% Similarity=0.160 Sum_probs=105.0
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCc---eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALNNENV---SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~~~~---~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
....|-+|+.++..+..++...+. ..|.|+|-+|+|||.+.+++.+.... ..+|+.+-.-++.+.+...|+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~ 78 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILN 78 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHH
Confidence 345678999999999999975432 34589999999999999999987732 2479999999999999999999
Q ss_pred HhCC-cccccchHH---HHHHHHHHHh-------cCCeEEEEEcCCCCccchhhhcCC----C--CCCCCCcEEEEEcCC
Q 002024 85 VLGL-TICGIEESA---RAGYLWERIK-------MEKRILVILDDVWERIDLQKVGIP----L--GEDHEGCNILLTSRS 147 (979)
Q Consensus 85 ~l~~-~~~~~~~~~---~~~~~~~~l~-------~~~~~LlvlDd~~~~~~~~~l~~~----~--~~~~~~~~iiiTtr~ 147 (979)
..+. +.++..... ........+. .++.+.||+|+++...+.++...+ + ..+.+.. +|+++-.
T Consensus 79 ~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~ 157 (438)
T KOG2543|consen 79 KSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAP 157 (438)
T ss_pred HhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEecc
Confidence 9862 222111111 1111111111 246899999999876554332111 0 1122333 3333332
Q ss_pred h---hhhh--ccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 148 Q---GVCN--QMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 148 ~---~~~~--~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
. .... ......++.++..+.+|...++.+--
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 1 1111 12234677889999999999987644
No 161
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00028 Score=77.41 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=102.8
Q ss_pred CCCchhHHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHH
Q 002024 9 KGIFESRKSIVKQLLEALN---N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIV 76 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~---~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 76 (979)
...+=|-+..+.++.+++. . ...+=|.+|||+|.|||.||++++.+..+ . ++.++.+
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v--P-----f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV--P-----FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC--c-----eEeecch----
Confidence 4566788888888877753 1 23466789999999999999999998873 2 3444333
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--------c-----hhhh---cCCCCC-C--CC
Q 002024 77 KIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--------D-----LQKV---GIPLGE-D--HE 137 (979)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--------~-----~~~l---~~~~~~-~--~~ 137 (979)
+|+..+.+ ...+.+..+.+.-....+++++||++|... + +..+ +..+.. . +.
T Consensus 258 ----eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~ 328 (802)
T KOG0733|consen 258 ----EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGD 328 (802)
T ss_pred ----hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCC
Confidence 33333322 224566777776667899999999997651 1 1111 111211 1 22
Q ss_pred CcEEEE-EcCChhhhhcc----CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 138 GCNILL-TSRSQGVCNQM----DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 138 ~~~iii-Ttr~~~~~~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
+..||- |+|...+-..+ +-.+.|.+.--+..+-.++++..+.+..-...+ ...+|++.+-|+
T Consensus 329 ~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~--d~~qlA~lTPGf 395 (802)
T KOG0733|consen 329 PVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF--DFKQLAKLTPGF 395 (802)
T ss_pred CeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc--CHHHHHhcCCCc
Confidence 333333 44544332211 234677888778888788887776432222221 166788887775
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00028 Score=81.80 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=95.9
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEeccCCCHHHHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-----YDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~i 82 (979)
...|++||++|+.++++.|....-.--.++|.+|+|||+++..++.+...++- ...++-++.+
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g------------ 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG------------ 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH------------
Confidence 45789999999999999997433222346899999999999999998764321 1222222111
Q ss_pred HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------hhhhcCCCCCCCCCcEEEEEcCChhh--
Q 002024 83 AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------LQKVGIPLGEDHEGCNILLTSRSQGV-- 150 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------~~~l~~~~~~~~~~~~iiiTtr~~~~-- 150 (979)
.-..+.....+-..+...+.+.+.+.++.+|++|++++..- ...+..|....+.-..|-.||-+..-
T Consensus 236 -~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EYRk~ 314 (786)
T COG0542 236 -SLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEYRKY 314 (786)
T ss_pred -HHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHHHHH
Confidence 11111111223356667777777766799999999876411 11122222222333334456654311
Q ss_pred ----hhccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 151 ----CNQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 151 ----~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
+...+.-+.+.+...+.+++..+++-..
T Consensus 315 iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 315 IEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred hhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 0112345789999999999999987443
No 163
>CHL00181 cbbX CbbX; Provisional
Probab=97.83 E-value=0.00042 Score=73.01 Aligned_cols=131 Identities=10% Similarity=0.119 Sum_probs=71.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeE
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRI 112 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 112 (979)
-+.++|++|+|||++|+.+++.......-...-|+.++. .++... ..+. .. .....+.+. ...-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~---~~g~-----~~-~~~~~~l~~---a~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQ---YIGH-----TA-PKTKEVLKK---AMGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHH---Hhcc-----ch-HHHHHHHHH---ccCC
Confidence 477999999999999999998764322211112344331 122111 1111 11 112222222 2234
Q ss_pred EEEEcCCCCc-----------cchhhhcCCCCCCCCCcEEEEEcCChhhhhc--------cCCcceEEcCCCCHHHHHHH
Q 002024 113 LVILDDVWER-----------IDLQKVGIPLGEDHEGCNILLTSRSQGVCNQ--------MDAQKIFIVRTLLEEESWIL 173 (979)
Q Consensus 113 LlvlDd~~~~-----------~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~--------~~~~~~~~l~~L~~~e~~~l 173 (979)
+|++|+++.. +....+...+.....+.+||.++....+... -+....+++++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8899999753 1122232223233345566666653322110 02346899999999999999
Q ss_pred HHHHhC
Q 002024 174 FREAAG 179 (979)
Q Consensus 174 ~~~~~~ 179 (979)
+...+.
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 988774
No 164
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.81 E-value=6.5e-05 Score=81.81 Aligned_cols=107 Identities=20% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH-HhCC
Q 002024 10 GIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA-VLGL 88 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~-~l~~ 88 (979)
..+++.++.++.+...+... +.|.++|++|+|||++|+.+++.......++.+.|+.++...+..+++....- ..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy 252 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGF 252 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCe
Confidence 34667788888888888754 56778999999999999999998875567888999999988887776643311 0111
Q ss_pred cccccchHHHHHHHHHHHh--cCCeEEEEEcCCCCc
Q 002024 89 TICGIEESARAGYLWERIK--MEKRILVILDDVWER 122 (979)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~--~~~~~LlvlDd~~~~ 122 (979)
. -.......+.++.. ..+++++|+|+++..
T Consensus 253 ~----~~~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 R----RKDGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred E----ecCchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0 00111222222222 246899999998653
No 165
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.80 E-value=0.00024 Score=79.49 Aligned_cols=152 Identities=13% Similarity=0.073 Sum_probs=90.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
...++|+|+.|+|||+|++++++..... ...+++++. ..+...+...+... ......+.. ..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~--~~ 202 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFY--RN 202 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHc--cc
Confidence 3568899999999999999999988632 345667653 34444555554311 111122222 23
Q ss_pred eEEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEcCC-h--------hhhhccCCcceEEcCCCCHHHHHHHHHH
Q 002024 111 RILVILDDVWERID----LQKVGIPLGE-DHEGCNILLTSRS-Q--------GVCNQMDAQKIFIVRTLLEEESWILFRE 176 (979)
Q Consensus 111 ~~LlvlDd~~~~~~----~~~l~~~~~~-~~~~~~iiiTtr~-~--------~~~~~~~~~~~~~l~~L~~~e~~~l~~~ 176 (979)
.-++++||++.... .+.+...++. ...|..||+|+.. + .+.+++.....+.+.+++.++...++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 44888999865421 1122221111 1135568887753 2 2224445567899999999999999998
Q ss_pred HhCCCCCCccchHHHHHHHHHcCCC
Q 002024 177 AAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
.+.... ..-.++++.-|++...|.
T Consensus 283 k~~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHcC-CCCCHHHHHHHHHhcCCC
Confidence 885432 222345667677776654
No 166
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00068 Score=72.70 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=87.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCc-----ccc---cchHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT-----ICG---IEESARAGYL 102 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~-----~~~---~~~~~~~~~~ 102 (979)
...+.++|+.|+|||++|+.++...--....+ ....+....++.+...-..+ ..+ .-..+.+.++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l 94 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQG-------GGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVREL 94 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHH
Confidence 46788999999999999999999864221100 00000111111111100000 000 0001222333
Q ss_pred HHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCCh-hhhhc-cCCcceEEcCCCCHHHHHHHH
Q 002024 103 WERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQ-GVCNQ-MDAQKIFIVRTLLEEESWILF 174 (979)
Q Consensus 103 ~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~-~~~~~~~~l~~L~~~e~~~l~ 174 (979)
.+.+. .+++-++|||+++... ..+.+...+-.-..+..+|.+|.+. .+..- .+.-+.+.+.+++.+++.+.+
T Consensus 95 ~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L 174 (328)
T PRK05707 95 VSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL 174 (328)
T ss_pred HHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHH
Confidence 33332 2455566789998752 2333333232223455666666654 33322 223377999999999999999
Q ss_pred HHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 175 REAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
.+..... .++.+..+++.++|.|.....
T Consensus 175 ~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~ 202 (328)
T PRK05707 175 QQALPES-----DERERIELLTLAGGSPLRALQ 202 (328)
T ss_pred HHhcccC-----ChHHHHHHHHHcCCCHHHHHH
Confidence 8764211 123366788999999975443
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.79 E-value=9.2e-05 Score=68.66 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=42.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC-eE
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK-RI 112 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~ 112 (979)
|.|+|++|+|||++|+.+++.... .++.++.+...+. ........+..+.+...... +.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~-----~~~~i~~~~~~~~---------------~~~~~~~~i~~~~~~~~~~~~~~ 60 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF-----PFIEIDGSELISS---------------YAGDSEQKIRDFFKKAKKSAKPC 60 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS-----EEEEEETTHHHTS---------------STTHHHHHHHHHHHHHHHTSTSE
T ss_pred CEEECcCCCCeeHHHHHHHhhccc-----ccccccccccccc---------------cccccccccccccccccccccce
Confidence 579999999999999999998751 1344443322100 11122233444444444344 89
Q ss_pred EEEEcCCCCc
Q 002024 113 LVILDDVWER 122 (979)
Q Consensus 113 LlvlDd~~~~ 122 (979)
++++||++..
T Consensus 61 vl~iDe~d~l 70 (132)
T PF00004_consen 61 VLFIDEIDKL 70 (132)
T ss_dssp EEEEETGGGT
T ss_pred eeeeccchhc
Confidence 9999999754
No 168
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.78 E-value=0.00022 Score=80.29 Aligned_cols=173 Identities=14% Similarity=0.101 Sum_probs=96.7
Q ss_pred CCCchhHHHHHHHHHHHhc----------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 9 KGIFESRKSIVKQLLEALN----------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~----------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
...+.|.+...+.+.+... -...+-|.++|++|+|||.+|+.++.... ..| +-++.+.
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~~------- 294 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVGK------- 294 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhHH-------
Confidence 4456777766666554211 12346688999999999999999998875 222 1222211
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--------------hhhhcCCCCCCCCCcEEEEE
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--------------LQKVGIPLGEDHEGCNILLT 144 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--------------~~~l~~~~~~~~~~~~iiiT 144 (979)
+.... -+ ........+.+......+++|++|+++..-. +..+...+.....+..||.|
T Consensus 295 ---l~~~~----vG-ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 295 ---LFGGI----VG-ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---hcccc----cC-hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 11110 01 1122334444444456789999999974310 11111111122334456667
Q ss_pred cCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 145 SRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 145 tr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
|...+.. ..-+-...+.++.-+.++-.++|..+..+.............+++.+.|+
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~Gf 428 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKF 428 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCC
Confidence 7654322 11234577889999999999999988754332211122367788887775
No 169
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.78 E-value=0.00029 Score=69.87 Aligned_cols=52 Identities=17% Similarity=0.186 Sum_probs=42.0
Q ss_pred CCCCCchhHHHHHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002024 7 SSKGIFESRKSIVKQLLEAL----NNENVSVIGLCGMGGVGKTTLAKEIGKQVQES 58 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l----~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~ 58 (979)
.....++|-+++.+.|.+.. .+.+..-+.+||..|+|||++++++.+.+..+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 35677899999998887654 45556678899999999999999999988743
No 170
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=1.2e-05 Score=94.17 Aligned_cols=111 Identities=20% Similarity=0.162 Sum_probs=63.0
Q ss_pred hhhcCCCCccEEEecC-CcC-CCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccc--hhhccCcc
Q 002024 403 KFFQGMKDLKVLDLSY-ILP-LSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIP--ETFCRLSH 478 (979)
Q Consensus 403 ~~~~~l~~L~~L~L~~-~~~-~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp--~~i~~L~~ 478 (979)
.....+|.||.|.+.| ... ..+......+++|+.||+++++++.+..+++|+|||+|.+.+-.+..-. ..+.+|++
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 3344566666666666 322 1233344566777777777777777777777777777777665555332 35666777
Q ss_pred ccEEecCCCCCcccc--Cc---chhccCcCCcEEEcccCc
Q 002024 479 LWLLDLDHCRQLALI--PH---GVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 479 L~~L~l~~c~~~~~~--p~---~~l~~L~~L~~L~l~~~~ 513 (979)
|++||++........ .. +.-..|++|+.|+.+++.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 777777763322111 00 001236666666666553
No 171
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=4.7e-07 Score=99.99 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=90.5
Q ss_pred CccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCC
Q 002024 410 DLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCR 488 (979)
Q Consensus 410 ~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~ 488 (979)
.|.+.+.+++.-...-.++.-++.|+.|+|++|+++....+.+++.|++|||++|.++.+|. ....++ |+.|.+++|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~ 243 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA 243 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecccH
Confidence 35555555533324455677788899999999988888888889999999999998888875 333444 8888888854
Q ss_pred CccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecccccCC
Q 002024 489 QLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 489 ~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
++.+-. +.+|++|+.|++++|... ....+.-+..|..|+.|.+.++..
T Consensus 244 -l~tL~g--ie~LksL~~LDlsyNll~----~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 244 -LTTLRG--IENLKSLYGLDLSYNLLS----EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -HHhhhh--HHhhhhhhccchhHhhhh----cchhhhHHHHHHHHHHHhhcCCcc
Confidence 566654 788899999998887543 233345566677788888877654
No 172
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.76 E-value=3.7e-05 Score=54.54 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=14.4
Q ss_pred CCcEEEcccCcCcccchhhccCccccEEecCCC
Q 002024 455 NLEILSLCRSSIKEIPETFCRLSHLWLLDLDHC 487 (979)
Q Consensus 455 ~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c 487 (979)
+|++|++++|.++.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 344444444444444444444444444444443
No 173
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.75 E-value=0.00036 Score=77.17 Aligned_cols=167 Identities=20% Similarity=0.200 Sum_probs=99.4
Q ss_pred chhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCcc
Q 002024 12 FESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLTI 90 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~ 90 (979)
...|.+.+.++.+.+..... ++.|.||-++||||+++.+....... ++++...+. .+..++ .+..+
T Consensus 19 ~~~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l-~d~~~------ 85 (398)
T COG1373 19 EIERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIEL-LDLLR------ 85 (398)
T ss_pred hhhHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhH-HHHHH------
Confidence 34555667777777765543 89999999999999997777665522 445443222 222222 11111
Q ss_pred cccchHHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhh------hccCCcceEEcCC
Q 002024 91 CGIEESARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVC------NQMDAQKIFIVRT 164 (979)
Q Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~------~~~~~~~~~~l~~ 164 (979)
.+..+...++..+++|+|+...+|......+.+.++. +|++|+-+..+. ...+....+++-|
T Consensus 86 -----------~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~P 153 (398)
T COG1373 86 -----------AYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYP 153 (398)
T ss_pred -----------HHHHhhccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECC
Confidence 1111111277899999999999988766666555555 788887765433 2224468899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 165 LLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 165 L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
|+..|...+-..... ...... .-+-.-..||.|.++..-
T Consensus 154 lSF~Efl~~~~~~~~----~~~~~~-~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 154 LSFREFLKLKGEEIE----PSKLEL-LFEKYLETGGFPESVKAD 192 (398)
T ss_pred CCHHHHHhhcccccc----hhHHHH-HHHHHHHhCCCcHHHhCc
Confidence 999998775441000 001111 222223468888776653
No 174
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.74 E-value=6.1e-06 Score=92.94 Aligned_cols=175 Identities=27% Similarity=0.267 Sum_probs=127.4
Q ss_pred CCCcCCccEEEccCCcccccCC-cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEE
Q 002024 359 RDTFEDLTGISLMSNYIHEVPA-MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTL 437 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L 437 (979)
...+.++..+++.+|.+..+.. ...+++|+.|++++|.+..+.. +..+..|+.|+++++.. .-...+..++.|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i-~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLI-SDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheeccccccccccc--hhhccchhhheeccCcc-hhccCCccchhhhcc
Confidence 4567889999999999999988 7789999999999999999876 57888899999999655 333456679999999
Q ss_pred EeCCCCCCCCcc--ccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcC--CcEEEcccCc
Q 002024 438 RLEDCYLGDLSV--IGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDK--LEEFYMWNTF 513 (979)
Q Consensus 438 ~L~~~~l~~l~~--i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~--L~~L~l~~~~ 513 (979)
++++|.+..++. ...+.+|+.+.+.+|.+..+. .+..+..+..+++..+. +..+.. +..+.. |+.+++.++.
T Consensus 168 ~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~-i~~~~~--l~~~~~~~L~~l~l~~n~ 243 (414)
T KOG0531|consen 168 DLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNK-ISKLEG--LNELVMLHLRELYLSGNR 243 (414)
T ss_pred cCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccccc-ceeccC--cccchhHHHHHHhcccCc
Confidence 999999988877 589999999999999877653 34445555555666543 222221 233333 7777777664
Q ss_pred cccccccccch-hccccccccceecccccCCcCCC
Q 002024 514 KNWDCETNAKV-VELQALTRLTNLMFHFPQNSILP 547 (979)
Q Consensus 514 ~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~ 547 (979)
.. .+ ..+..++.+..|++..+......
T Consensus 244 i~-------~~~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 244 IS-------RSPEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred cc-------cccccccccccccccchhhccccccc
Confidence 42 11 45566777777777766554333
No 175
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.00023 Score=79.20 Aligned_cols=191 Identities=16% Similarity=0.107 Sum_probs=118.8
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|.+.....|...+..+. .....+.|+.|+||||+||.++.-..-... ....+......++.|.
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEIN 83 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhh
Confidence 46778889999999999999887543 245578999999999999999987642211 1111223333334443
Q ss_pred HHhCCcccccc-----hHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCCh-hhh
Q 002024 84 AVLGLTICGIE-----ESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRSQ-GVC 151 (979)
Q Consensus 84 ~~l~~~~~~~~-----~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~ 151 (979)
..-..+.-+.+ ..+.+..+.+... .++.=+.|+|+|+.. ..+..+.-.+-.-..+...|..|++. .+-
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip 163 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIP 163 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCc
Confidence 32111111111 1233444555443 356678899999764 44666655554444555656555543 332
Q ss_pred -hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch
Q 002024 152 -NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI 203 (979)
Q Consensus 152 -~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 203 (979)
+..+.-+.|.++.++.++....+...+.... -...++....|++...|...
T Consensus 164 ~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~-I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 164 NTILSRCQRFDFKRLDLEEIAKHLAAILDKEG-INIEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhhccccccccCCCHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHcCCChh
Confidence 2333447899999999999999998885322 23334567778888887655
No 176
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.69 E-value=0.00016 Score=68.19 Aligned_cols=90 Identities=23% Similarity=0.197 Sum_probs=53.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
+.+.|+|++|+||||+++.++....... ..+++++.+........... ................+....+.....+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCC
Confidence 5788999999999999999998876332 34666666554332222211 11111122222233344444555543445
Q ss_pred EEEEEcCCCCccc
Q 002024 112 ILVILDDVWERID 124 (979)
Q Consensus 112 ~LlvlDd~~~~~~ 124 (979)
.++++|+++....
T Consensus 80 ~viiiDei~~~~~ 92 (148)
T smart00382 80 DVLILDEITSLLD 92 (148)
T ss_pred CEEEEECCcccCC
Confidence 9999999987643
No 177
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.5e-05 Score=93.57 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=91.5
Q ss_pred CCCccEEEecC--CcCCCCCcCc-cCCcCCCEEEeCCCCCCC--C-ccccCCcCCcEEEcccCcCcccchhhccCccccE
Q 002024 408 MKDLKVLDLSY--ILPLSLPPSL-SFLVDLRTLRLEDCYLGD--L-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWL 481 (979)
Q Consensus 408 l~~L~~L~L~~--~~~~~~p~~~-~~l~~L~~L~L~~~~l~~--l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~ 481 (979)
-.+|+.|+++| .+...=|..+ ..+|.|+.|.+.|-.+.. + ....+++||..||+|++++..+ ..+++|++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 35788888888 2222223344 358999999999875432 2 4466899999999999999998 78999999999
Q ss_pred EecCCCCCccccCcchhccCcCCcEEEcccCcccccccccc-chhccccccccceecccccCC
Q 002024 482 LDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNA-KVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 482 L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~ 543 (979)
|.+.+-......--..+-+|++|++||++............ -++--..|++||.|+.+++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 99887332211111126789999999998764432221101 112224588999999987664
No 178
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00037 Score=76.44 Aligned_cols=152 Identities=17% Similarity=0.259 Sum_probs=95.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
..=|.+|||+|.|||-||++++++.... |+++..+ +++...-+ .....+.++.++-..+.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP--------ELlNkYVG-----ESErAVR~vFqRAR~sa 604 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP--------ELLNKYVG-----ESERAVRQVFQRARASA 604 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH--------HHHHHHhh-----hHHHHHHHHHHHhhcCC
Confidence 3456799999999999999999998732 4555443 22222111 22455677778777899
Q ss_pred eEEEEEcCCCCcc-------------chhhhcCCCCC--CCCCcEEEEEcCChhhhh-----ccCCcceEEcCCCCHHHH
Q 002024 111 RILVILDDVWERI-------------DLQKVGIPLGE--DHEGCNILLTSRSQGVCN-----QMDAQKIFIVRTLLEEES 170 (979)
Q Consensus 111 ~~LlvlDd~~~~~-------------~~~~l~~~~~~--~~~~~~iiiTtr~~~~~~-----~~~~~~~~~l~~L~~~e~ 170 (979)
+++|+||++|... .+..+...+.. ...|.-||-.|..+++.. .-+-...+.++.-+.+|-
T Consensus 605 PCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 605 PCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred CeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999997541 13333333322 245666777776655442 223346788888889999
Q ss_pred HHHHHHHhCCCCCCccchHHHHHHHHH--cCCCc
Q 002024 171 WILFREAAGTVVENSDLNSIAREVAAK--CSGLP 202 (979)
Q Consensus 171 ~~l~~~~~~~~~~~~~~~~~~~~i~~~--~~g~P 202 (979)
.++++..+....++...+--.++|++. |.|+-
T Consensus 685 ~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gft 718 (802)
T KOG0733|consen 685 VAILKTITKNTKPPLSSDVDLDEIARNTKCEGFT 718 (802)
T ss_pred HHHHHHHhccCCCCCCcccCHHHHhhcccccCCc
Confidence 999998886433322222225556654 44653
No 179
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.68 E-value=3.5e-06 Score=98.15 Aligned_cols=247 Identities=18% Similarity=0.145 Sum_probs=115.3
Q ss_pred ccccchhccccCccceeecccCccCCCCCCCccEEeeecc-CCccccc--chhHHHhhccCceEeeeccccccceecccC
Q 002024 660 FHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWC-QNILNIA--PIHLLRRLKNLEYCSVFFCASLLHVFDLQG 736 (979)
Q Consensus 660 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c-~~l~~~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~ 736 (979)
++.|+.|.+.++..+.+... .......+.|++|++..| ......+ .......+++|+.++++.|..+.+..-.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~-- 262 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSL--DALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS-- 262 (482)
T ss_pred CchhhHhhhcccccCChhhH--HHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH--
Confidence 56777777777766654211 111235677777777763 2222211 1123445566777777766653322100
Q ss_pred CCCccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecc---c
Q 002024 737 LDNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISC---I 813 (979)
Q Consensus 737 ~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c---~ 813 (979)
.-...+++|+.|.+.+|+.+++- ........+++|+.|+|+.|..++.-.- .....++++|++|.+..+ .
T Consensus 263 -----~l~~~c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~~c~~~~d~~l-~~~~~~c~~l~~l~~~~~~~c~ 335 (482)
T KOG1947|consen 263 -----ALASRCPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLSGCHGLTDSGL-EALLKNCPNLRELKLLSLNGCP 335 (482)
T ss_pred -----HHHhhCCCcceEccCCCCccchh-HHHHHHHhcCcccEEeeecCccchHHHH-HHHHHhCcchhhhhhhhcCCCc
Confidence 00112466777766666553330 0000112456677777777666543211 222444555555444333 2
Q ss_pred chHHHHhhcccccccCCCCCcccc-CCccEEEEecCCCceEeechhHHhhccCCC-EEEEecccccc-eeeccccccCCC
Q 002024 814 NLEEIFGKMEMMRKNSQPTTSQGL-QNLTTINIQSCSKLVNLFTASIAESLVLLK-TLRVISCAAVQ-EIVTDRERSKGA 890 (979)
Q Consensus 814 ~l~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~-~L~l~~c~~l~-~~~~~~~~~~~~ 890 (979)
.++...- ....... ..+..+.+.+|++++++.... .. ..... .+.+.+|+.++ .+...
T Consensus 336 ~l~~~~l----------~~~~~~~~d~~~~~~~~~~~~l~~~~l~~-~~-~~~~~~~~~l~gc~~l~~~l~~~------- 396 (482)
T KOG1947|consen 336 SLTDLSL----------SGLLTLTSDDLAELILRSCPKLTDLSLSY-CG-ISDLGLELSLRGCPNLTESLELR------- 396 (482)
T ss_pred cHHHHHH----------HHhhccCchhHhHHHHhcCCCcchhhhhh-hh-ccCcchHHHhcCCcccchHHHHH-------
Confidence 3443210 0001111 145555555555555542221 11 22222 35555565552 11111
Q ss_pred CccceeeccccccccccCccccccccCCceeeccccceeeeccCCCcee
Q 002024 891 SAERIEFPSLFEMELRNLDSLTCFCSGQFLIEFPALEMLTIAECPKIKT 939 (979)
Q Consensus 891 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~L~~ 939 (979)
...+.+|+.|.++.|...+.-........+.+++.+.+.+|+.+..
T Consensus 397 ---~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 397 ---LCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred ---hccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccc
Confidence 1123337777887777665542222111146677777888777765
No 180
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=6.3e-05 Score=53.37 Aligned_cols=40 Identities=33% Similarity=0.509 Sum_probs=34.2
Q ss_pred cCCCEEEeCCCCCCCCcc-ccCCcCCcEEEcccCcCcccch
Q 002024 432 VDLRTLRLEDCYLGDLSV-IGELSNLEILSLCRSSIKEIPE 471 (979)
Q Consensus 432 ~~L~~L~L~~~~l~~l~~-i~~L~~L~~L~Ls~~~l~~lp~ 471 (979)
++|++|++++|++++++. +++|++|++|++++|.+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 479999999999999977 9999999999999999987753
No 181
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.65 E-value=2.1e-05 Score=80.24 Aligned_cols=125 Identities=17% Similarity=0.186 Sum_probs=56.0
Q ss_pred CccEEEccCCccc--ccCCc----CCCCCceEEEccCCCCcccChhh-------------hcCCCCccEEEecCCcCCCC
Q 002024 364 DLTGISLMSNYIH--EVPAM----LECPKLQVLLLQENSPLVIPDKF-------------FQGMKDLKVLDLSYILPLSL 424 (979)
Q Consensus 364 ~l~~l~l~~~~~~--~~~~~----~~~~~L~~L~L~~~~~~~~~~~~-------------~~~l~~L~~L~L~~~~~~~~ 424 (979)
.++.+++++|.+. .++.+ .++..|+.|.|.+|.+...-... ...-+.||++...++.....
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 5556666666543 22211 14566666666666655322221 12233455555544222122
Q ss_pred C-----cCccCCcCCCEEEeCCCCCCCC------ccccCCcCCcEEEcccCcCc-----ccchhhccCccccEEecCCCC
Q 002024 425 P-----PSLSFLVDLRTLRLEDCYLGDL------SVIGELSNLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHCR 488 (979)
Q Consensus 425 p-----~~~~~l~~L~~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c~ 488 (979)
+ ..|...+.|+.+.+..|.|..- ..+..+++|++|||..|.++ .+...++.+++|+.|++++|.
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl 252 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL 252 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc
Confidence 2 2233444555555555543211 23445555555555555443 122334444555555555543
No 182
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.0013 Score=69.85 Aligned_cols=172 Identities=15% Similarity=0.100 Sum_probs=93.9
Q ss_pred HHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCC----------------CeEEEEEeccCCCHHHHH
Q 002024 17 SIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRY----------------DTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 17 ~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f----------------~~~~~~~~~~~~~~~~~~ 79 (979)
...+.+...+..+. ...+.++|+.|+||+++|..+++..--.... ..+.|+........
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~---- 86 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTG---- 86 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccc----
Confidence 34556666665543 4578899999999999999999876422111 11222210000000
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCC-hhhhh
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRS-QGVCN 152 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~-~~~~~ 152 (979)
.+....-..+.+.++.+.+. .+++-++|||+++.... -+.+...+-.-..+..+|.+|.+ ..+..
T Consensus 87 --------~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 87 --------DKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred --------ccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 00000000122233333332 35677899999987632 23332222222345555555554 44442
Q ss_pred cc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 153 QM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 153 ~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
-+ +.-+.+.+.+++.+++.+.+.... .+ +..+..+++.++|.|+....
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~~~---~~----~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLAQG---VS----ERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHHcC---CC----hHHHHHHHHHcCCCHHHHHH
Confidence 22 233788999999999998887531 11 22366789999999985543
No 183
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=4.1e-06 Score=97.62 Aligned_cols=254 Identities=19% Similarity=0.170 Sum_probs=134.7
Q ss_pred HhcccceeecccccCccc--cccccccCCcccccEEEEecc-CCceEEeecccccCCcccccccchhccccCccceeecc
Q 002024 603 LLKRSEFLFLHEFIGVQD--IDGDLISGGFTELKCLTLQSC-DNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICH 679 (979)
Q Consensus 603 ~~~~L~~L~L~~~~~~~~--~~~~~~~~~l~~L~~L~L~~~-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 679 (979)
.+++|+.|.+.++..+.+ ..+.. ..+++|+.|++.+| ......+.... .....+++|+.|.+..+..+++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~isd~~l 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLLLL--LLLSICRKLKSLDLSGCGLVTDIGL 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhHhh--hhhhhcCCcCccchhhhhccCchhH
Confidence 368888888887766655 22333 34789999999873 22222211101 1233457888888887776554321
Q ss_pred cCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEeccccc
Q 002024 680 GQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALP 759 (979)
Q Consensus 680 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 759 (979)
. .-...+++|+.|.+.+|..+++..-....+.+++|++|+++.|..+.+-. + ......+++|+.|.+.++.
T Consensus 262 ~--~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~----l---~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 262 S--ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSG----L---EALLKNCPNLRELKLLSLN 332 (482)
T ss_pred H--HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHH----H---HHHHHhCcchhhhhhhhcC
Confidence 1 11123788999998888876666555556778889999998887762210 0 0001224555554444432
Q ss_pred ccccccccCcccccccCccEEEeccCCCccc-ccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccC
Q 002024 760 EMTHIWKGDSRLISLCSLKKLCLWACDNLTK-LFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQ 838 (979)
Q Consensus 760 ~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~-l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~ 838 (979)
. ++.++.+.+.+|..... ... ......++.|+.+.+..|. ..+.
T Consensus 333 ~-------------c~~l~~~~l~~~~~~~~d~~~-~~~~~~~~~l~~~~l~~~~-~~~~-------------------- 377 (482)
T KOG1947|consen 333 G-------------CPSLTDLSLSGLLTLTSDDLA-ELILRSCPKLTDLSLSYCG-ISDL-------------------- 377 (482)
T ss_pred C-------------CccHHHHHHHHhhccCchhHh-HHHHhcCCCcchhhhhhhh-ccCc--------------------
Confidence 1 33344444444433321 111 2234444555555555443 2110
Q ss_pred CccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCcccccc
Q 002024 839 NLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCF 914 (979)
Q Consensus 839 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l 914 (979)
...+.+.+|++++ ..-........+++.|+++.|..++....... ...+..+..+++.+|+.++..
T Consensus 378 -~~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~--------~~~~~~~~~l~~~~~~~~~~~ 443 (482)
T KOG1947|consen 378 -GLELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCL--------ADSCSNLKDLDLSGCRVITLK 443 (482)
T ss_pred -chHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHH--------hhhhhccccCCccCcccccch
Confidence 1134566676663 21111122333378888888876654332211 001666777788887766554
No 184
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.62 E-value=0.00068 Score=82.36 Aligned_cols=107 Identities=18% Similarity=0.209 Sum_probs=63.2
Q ss_pred CCCchhHHHHHHHHHHHhc-------CC--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALN-------NE--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~-------~~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...++|.++.++.+.+.+. .+ ...++.++||.|+|||.+|+.+++..-. .....+-++++.-...
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~--~~~~~~~~dmse~~~~---- 638 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG--GEQNLITINMSEFQEA---- 638 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC--CCcceEEEeHHHhhhh----
Confidence 4578899999999988763 11 2346889999999999999999887642 1222333333221111
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
..+.+-+|.++.-... .....+.+.+.+.+.-+|+||+++..
T Consensus 639 ~~~~~l~g~~~gyvg~-~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 639 HTVSRLKGSPPGYVGY-GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhhccccCCCCCcccc-cccchHHHHHHhCCCcEEEEechhhc
Confidence 1111122322111111 11223455566677889999999754
No 185
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.0011 Score=73.86 Aligned_cols=151 Identities=15% Similarity=0.148 Sum_probs=89.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
..+-|.++||+|.|||++|+++++.... . |+.+..+ +++....+ +.+..+.++.++-.+.
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~--n-----Flsvkgp--------EL~sk~vG-----eSEr~ir~iF~kAR~~ 526 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGM--N-----FLSVKGP--------ELFSKYVG-----ESERAIREVFRKARQV 526 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcC--C-----eeeccCH--------HHHHHhcC-----chHHHHHHHHHHHhhc
Confidence 4678889999999999999999998762 2 3444332 22232222 1234455566655567
Q ss_pred CeEEEEEcCCCCccc-------------hhhhcCCCCCCCC--CcEEEEEcCChhhh--hcc---CCcceEEcCCCCHHH
Q 002024 110 KRILVILDDVWERID-------------LQKVGIPLGEDHE--GCNILLTSRSQGVC--NQM---DAQKIFIVRTLLEEE 169 (979)
Q Consensus 110 ~~~LlvlDd~~~~~~-------------~~~l~~~~~~~~~--~~~iiiTtr~~~~~--~~~---~~~~~~~l~~L~~~e 169 (979)
.+.+++||++|...- +..+...+..... +-.||-.|..++.. ..+ +-.+.+.++.-+.+-
T Consensus 527 aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~a 606 (693)
T KOG0730|consen 527 APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEA 606 (693)
T ss_pred CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHH
Confidence 779999999875411 2223333332222 33333344433332 112 245778887777778
Q ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 170 SWILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
..++|+.++.+..-.++ -..+++++++.|+-
T Consensus 607 R~~Ilk~~~kkmp~~~~--vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 607 RLEILKQCAKKMPFSED--VDLEELAQATEGYS 637 (693)
T ss_pred HHHHHHHHHhcCCCCcc--ccHHHHHHHhccCC
Confidence 88999998865554333 12566777776654
No 186
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00075 Score=72.85 Aligned_cols=151 Identities=12% Similarity=0.107 Sum_probs=85.1
Q ss_pred CCCchhHH---HHHHHHHHHhcCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHH
Q 002024 9 KGIFESRK---SIVKQLLEALNNEN---------VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIV 76 (979)
Q Consensus 9 ~~~~vgR~---~~l~~l~~~l~~~~---------~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 76 (979)
.+.+-|-| +|+++|+++|.++. ++=|.++||+|.|||-|||+++-+..+- +|......++..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP------FF~~sGSEFdEm 376 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP------FFYASGSEFDEM 376 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC------eEeccccchhhh
Confidence 34444554 56677777776431 4668899999999999999998776532 222222222211
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc-------------chhhhcCCCCC--CCCCcEE
Q 002024 77 KIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI-------------DLQKVGIPLGE--DHEGCNI 141 (979)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~-------------~~~~l~~~~~~--~~~~~~i 141 (979)
+-. -...++..+.+.-++.-+++|+||++|... .+..+...+.. +..|..|
T Consensus 377 ------~VG--------vGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 377 ------FVG--------VGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred ------hhc--------ccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 000 113455666666667889999999987541 12333333322 2345545
Q ss_pred EEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 142 LLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 142 iiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
|-.|.-++.... -+-...+.++.-+..--.++|..+..
T Consensus 443 igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 443 IGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred EeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 545554433321 12235566665555556666666553
No 187
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0011 Score=71.81 Aligned_cols=161 Identities=14% Similarity=0.098 Sum_probs=87.9
Q ss_pred CCchh-HHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhC
Q 002024 10 GIFES-RKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLG 87 (979)
Q Consensus 10 ~~~vg-R~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~ 87 (979)
..++| .+..++.+...+..+. .....++|+.|+|||++|+.+++..--....... ..+.....+.+...-.
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCC
Confidence 34567 7888888888887554 4566899999999999999998876422111000 0000011111100000
Q ss_pred Cc-----cc-ccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCCh-hhhhcc
Q 002024 88 LT-----IC-GIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRSQ-GVCNQM 154 (979)
Q Consensus 88 ~~-----~~-~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~~ 154 (979)
.+ .. ..-..+.+..+.+.+. .+.+-++|+|+++.... .+.+...+-.-..+..+|.+|.+. .+....
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 00 00 0000122233333332 35666889999876532 344444443334555566666543 333222
Q ss_pred -CCcceEEcCCCCHHHHHHHHHHH
Q 002024 155 -DAQKIFIVRTLLEEESWILFREA 177 (979)
Q Consensus 155 -~~~~~~~l~~L~~~e~~~l~~~~ 177 (979)
+.-..+++.+++.++..+.+...
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHHc
Confidence 23478999999999998888653
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.54 E-value=0.0016 Score=78.95 Aligned_cols=178 Identities=15% Similarity=0.174 Sum_probs=102.7
Q ss_pred CCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 9 KGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
...+.|.+...++|.+.+. -...+-|.++|++|+|||++|++++.... ..| +.+...
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~--~~f-----i~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG--ANF-----IAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--CCE-----EEEehH---
Confidence 3456777777777766543 11235578999999999999999998865 222 222211
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--------------hhhhcCCCCC--CCCCc
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--------------LQKVGIPLGE--DHEGC 139 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--------------~~~l~~~~~~--~~~~~ 139 (979)
++...... .....+..+.+......+.+|++|+++.... ...+...+.. ...+.
T Consensus 522 -----~l~~~~vG-----ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 -----EILSKWVG-----ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred -----HHhhcccC-----cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11111111 1123445555555567789999999864310 1112222221 12344
Q ss_pred EEEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHH
Q 002024 140 NILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTV 208 (979)
Q Consensus 140 ~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 208 (979)
.||.||...+.... -+-...+.++..+.++..++|..+..+..-..+. ....+++.+.|+ ...|..+
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCCHHHHHHH
Confidence 56667765543321 1345788999999999999998776543322211 156788888875 3444443
No 189
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.53 E-value=0.003 Score=71.03 Aligned_cols=171 Identities=15% Similarity=0.104 Sum_probs=113.0
Q ss_pred CCCCCchhHHHHHHHHHHHhc----C-CCceEEEEEcCCCCcHHHHHHHHHHHhhh---cc---CCCeEEEEEeccCCCH
Q 002024 7 SSKGIFESRKSIVKQLLEALN----N-ENVSVIGLCGMGGVGKTTLAKEIGKQVQE---SK---RYDTVVMAVVSHNLSI 75 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l~----~-~~~~~i~i~G~~GiGKT~La~~~~~~~~~---~~---~f~~~~~~~~~~~~~~ 75 (979)
+.++.+-+|+.+..+|-..+. + +....++|.|-+|+|||+.++.+.+.... +. .|+ .+.++...-..+
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~ 471 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASP 471 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCH
Confidence 367778899999999988775 3 34569999999999999999999996541 12 232 445666666789
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCC-CCCCcEEEEEcC-C
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGE-DHEGCNILLTSR-S 147 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~-~~~~~~iiiTtr-~ 147 (979)
.+++..|..++..... ........+..++. ..+.+++++|+++..-. .+.+...|.| ..++++++|.+= +
T Consensus 472 ~~~Y~~I~~~lsg~~~--~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaN 549 (767)
T KOG1514|consen 472 REIYEKIWEALSGERV--TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIAN 549 (767)
T ss_pred HHHHHHHHHhcccCcc--cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecc
Confidence 9999999999876432 22333444444443 34568888999865422 1222222333 456777665432 1
Q ss_pred h----------hhhhccCCcceEEcCCCCHHHHHHHHHHHhCCC
Q 002024 148 Q----------GVCNQMDAQKIFIVRTLLEEESWILFREAAGTV 181 (979)
Q Consensus 148 ~----------~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~ 181 (979)
. .+..++ +...+.++|.+.++-.++...+..+.
T Consensus 550 TmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 550 TMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred cccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcch
Confidence 1 111222 23678899999999999998888644
No 190
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.52 E-value=0.00026 Score=66.88 Aligned_cols=101 Identities=23% Similarity=0.345 Sum_probs=60.3
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
....+++++|++..++.+..++.|.+|.|.+|.+..+.+..-..+++ |..|.|.+|.
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~-----------------------l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPN-----------------------LKTLILTNNS 99 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccc-----------------------cceEEecCcc
Confidence 34556777777777766667777777777777777666554443444 4555555544
Q ss_pred CCCC---ccccCCcCCcEEEcccCcCcccc----hhhccCccccEEecCCC
Q 002024 444 LGDL---SVIGELSNLEILSLCRSSIKEIP----ETFCRLSHLWLLDLDHC 487 (979)
Q Consensus 444 l~~l---~~i~~L~~L~~L~Ls~~~l~~lp----~~i~~L~~L~~L~l~~c 487 (979)
+.++ ..+..++.|++|.+-+|.+++-+ ..+.++++|++||+.+-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 3333 33445556666666666555433 24667777777777663
No 191
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0029 Score=61.55 Aligned_cols=173 Identities=14% Similarity=0.153 Sum_probs=99.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
|.+..+.+=|-++.+.+|.+.+. -...+-+.++||+|.|||-||+++++... ..|+.++.
T Consensus 142 PDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~-------c~firvsg 214 (404)
T KOG0728|consen 142 PDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTD-------CTFIRVSG 214 (404)
T ss_pred CccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcc-------eEEEEech
Confidence 33444445566777888877764 12356678999999999999999986654 44666664
Q ss_pred CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------ch----hhhcCCCCC-
Q 002024 72 NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------DL----QKVGIPLGE- 134 (979)
Q Consensus 72 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~~----~~l~~~~~~- 134 (979)
. + +.+.+-+ .....+..+.-.-...-+.+|+.|+++... +. -.+...+..
T Consensus 215 s----e----lvqk~ig-----egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf 281 (404)
T KOG0728|consen 215 S----E----LVQKYIG-----EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF 281 (404)
T ss_pred H----H----HHHHHhh-----hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc
Confidence 4 2 2222111 011222333332334677889999986541 11 111222222
Q ss_pred -CCCCcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCC--CccchHHHHHHHHHcCCC
Q 002024 135 -DHEGCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVE--NSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 135 -~~~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~--~~~~~~~~~~i~~~~~g~ 201 (979)
....-+||.+|..-++. ..-+..+.+++++-+.+.-.++++-+.....- ..+ ..+|+++..|.
T Consensus 282 eatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~----l~kiaekm~ga 352 (404)
T KOG0728|consen 282 EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGIN----LRKIAEKMPGA 352 (404)
T ss_pred ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccC----HHHHHHhCCCC
Confidence 23566788777654443 22345688999998888888888766532221 233 44556555443
No 192
>PRK08116 hypothetical protein; Validated
Probab=97.48 E-value=0.00066 Score=70.78 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
..+.|+|+.|+|||.||.++++....+ ...+++++ ..+++..+...+.... ......+.+.+. +..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~-~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG-----KEDENEIIRSLV-NAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc-----cccHHHHHHHhc-CCC
Confidence 458899999999999999999998743 34566765 3445555555543221 112233445454 333
Q ss_pred EEEEEcCCCCc--cchh--hhcCCCCC-CCCCcEEEEEcCCh
Q 002024 112 ILVILDDVWER--IDLQ--KVGIPLGE-DHEGCNILLTSRSQ 148 (979)
Q Consensus 112 ~LlvlDd~~~~--~~~~--~l~~~~~~-~~~~~~iiiTtr~~ 148 (979)
||||||+... .+|. .+...+.. ...+..+||||.-.
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 8999999532 2222 12111111 12456688888754
No 193
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.002 Score=69.74 Aligned_cols=133 Identities=17% Similarity=0.187 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
....++|||+.|.|||.|+.++++.......=..+++++. .......+..+.. +......+..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 3678999999999999999999999874443345666533 2333333333221 1111111111
Q ss_pred CeEEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEcCC---------hhhhhccCCcceEEcCCCCHHHHHHHHH
Q 002024 110 KRILVILDDVWERID----LQKVGIPLGE-DHEGCNILLTSRS---------QGVCNQMDAQKIFIVRTLLEEESWILFR 175 (979)
Q Consensus 110 ~~~LlvlDd~~~~~~----~~~l~~~~~~-~~~~~~iiiTtr~---------~~~~~~~~~~~~~~l~~L~~~e~~~l~~ 175 (979)
.-=++++||++-... .+.+...|+. ...|..||+|++. +.+.+++...-.+++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 223788999864311 1222222221 1234489999863 2334556677899999999999999999
Q ss_pred HHhC
Q 002024 176 EAAG 179 (979)
Q Consensus 176 ~~~~ 179 (979)
+.+.
T Consensus 255 kka~ 258 (408)
T COG0593 255 KKAE 258 (408)
T ss_pred HHHH
Confidence 8774
No 194
>PRK10536 hypothetical protein; Provisional
Probab=97.45 E-value=0.00074 Score=68.03 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=42.9
Q ss_pred CCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEE
Q 002024 9 KGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVM 66 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~ 66 (979)
...+.+|......+...+.+. .+|.+.|++|+|||+||.+++.+.-....|+.++.
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 456778888888888888764 49999999999999999999986432244554443
No 195
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.44 E-value=0.00019 Score=68.82 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=69.3
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAV 85 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~ 85 (979)
|.....+||-++.++++.-...+++.+-+.|.||+|+||||-+..+++..--...-+.+.=+.+|+..++..+...| +.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~I-K~ 101 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKI-KM 101 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHH-HH
Confidence 44456789999999999888888888889999999999999999998887522222445556666655554433332 11
Q ss_pred hCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 86 LGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
+. +-.-.+-.++.-++|+|++|..
T Consensus 102 FA-------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 102 FA-------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HH-------------HhhccCCCCceeEEEeeccchh
Confidence 11 0001111366678899999876
No 196
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.43 E-value=0.0014 Score=62.68 Aligned_cols=136 Identities=18% Similarity=0.236 Sum_probs=73.3
Q ss_pred hHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccC------------------CCeEEEEEeccC--
Q 002024 14 SRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKR------------------YDTVVMAVVSHN-- 72 (979)
Q Consensus 14 gR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~------------------f~~~~~~~~~~~-- 72 (979)
|.++..+.|...+..+.. ..+.++|+.|+||+++|+.+++..--... ...+.|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 567788888888876654 56789999999999999999997542221 223444433222
Q ss_pred -CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCChh
Q 002024 73 -LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQG 149 (979)
Q Consensus 73 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~~ 149 (979)
...+++ +++.+.+..... .+++=++|+|+++... ...++...+-.-..+.++|++|++.+
T Consensus 81 ~i~i~~i-r~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 81 SIKIDQI-REIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SBSHHHH-HHHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred hhhHHHH-HHHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChH
Confidence 222222 233333322211 3567788999998752 23333333323345777777777653
Q ss_pred -hh-hccCCcceEEcCCCC
Q 002024 150 -VC-NQMDAQKIFIVRTLL 166 (979)
Q Consensus 150 -~~-~~~~~~~~~~l~~L~ 166 (979)
+. +....-..+.+.+++
T Consensus 144 ~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GS-HHHHTTSEEEEE----
T ss_pred HChHHHHhhceEEecCCCC
Confidence 22 222233566666553
No 197
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.0011 Score=74.75 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=89.3
Q ss_pred chhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHH
Q 002024 12 FESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAV 85 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~ 85 (979)
=+|-++..++|+++|. .-..+++.++||+|+|||.|++.+|+-.. ..| +-+++..-.|..++-..--..
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~--Rkf---vR~sLGGvrDEAEIRGHRRTY 399 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALG--RKF---VRISLGGVRDEAEIRGHRRTY 399 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhC--CCE---EEEecCccccHHHhccccccc
Confidence 3677888888888875 22347999999999999999999998876 344 334455444444432221111
Q ss_pred hCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------------chhhhcCCCCC---CCCCcEEEEE
Q 002024 86 LGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------------DLQKVGIPLGE---DHEGCNILLT 144 (979)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------------~~~~l~~~~~~---~~~~~~iiiT 144 (979)
+|. . ...+.+-..+. +.+.-+++||++|... +-..+...+.. +-..-..|.|
T Consensus 400 IGa----m--PGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 400 IGA----M--PGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred ccc----C--ChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEee
Confidence 111 0 12222222222 2456788899997651 11112221211 1122233334
Q ss_pred cCChh-h-hhccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 145 SRSQG-V-CNQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 145 tr~~~-~-~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
..+-+ + +..++..+.+++.+.+.+|-.++-.++.
T Consensus 473 ANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 473 ANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred cCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 43322 1 1334556899999999999998887765
No 198
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.42 E-value=5.4e-05 Score=77.37 Aligned_cols=160 Identities=22% Similarity=0.196 Sum_probs=110.6
Q ss_pred CCCCCceEEEccCCCCcc----cChhhhcCCCCccEEEecCC-cCC----C---------CCcCccCCcCCCEEEeCCCC
Q 002024 382 LECPKLQVLLLQENSPLV----IPDKFFQGMKDLKVLDLSYI-LPL----S---------LPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 382 ~~~~~L~~L~L~~~~~~~----~~~~~~~~l~~L~~L~L~~~-~~~----~---------~p~~~~~l~~L~~L~L~~~~ 443 (979)
..+++|+.|+||.|.+.. ....+++.+..|+.|.|.+| +.. . ....+..-+.||++...+|+
T Consensus 89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 478899999999998872 23456778889999999983 220 1 12223456689999999998
Q ss_pred CCCC------ccccCCcCCcEEEcccCcCc-----ccchhhccCccccEEecCCCCCccc----cCcchhccCcCCcEEE
Q 002024 444 LGDL------SVIGELSNLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHCRQLAL----IPHGVISQLDKLEEFY 508 (979)
Q Consensus 444 l~~l------~~i~~L~~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c~~~~~----~p~~~l~~L~~L~~L~ 508 (979)
+.+- ..+...+.|+.+.++.|.|. -+...+.++++|+.||+.+|+.... +... ++.+++|+.++
T Consensus 169 len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka-L~s~~~L~El~ 247 (382)
T KOG1909|consen 169 LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA-LSSWPHLRELN 247 (382)
T ss_pred cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH-hcccchheeec
Confidence 7655 34677789999999998765 2346788999999999999764332 2222 67778899999
Q ss_pred cccCccccccccccchhcc-ccccccceecccccCC
Q 002024 509 MWNTFKNWDCETNAKVVEL-QALTRLTNLMFHFPQN 543 (979)
Q Consensus 509 l~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~ 543 (979)
+++|....... .+....+ ...++|+.|.+.++.+
T Consensus 248 l~dcll~~~Ga-~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 248 LGDCLLENEGA-IAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ccccccccccH-HHHHHHHhccCCCCceeccCcchh
Confidence 99886542221 1222222 3367888888877765
No 199
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.41 E-value=0.0016 Score=78.76 Aligned_cols=104 Identities=18% Similarity=0.276 Sum_probs=62.6
Q ss_pred CCCchhHHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNN-------E--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~-------~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...++|.++.++.+...+.. + ....+.++||+|+|||.+|+.+++... ...+.++.+......
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~--- 524 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH--- 524 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc---
Confidence 45678999999988877651 1 234578999999999999999998763 234455544322111
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
.+.+.+|.+..-.. ......+.+.+...+.-+++||+++..
T Consensus 525 -~~~~lig~~~gyvg-~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 -TVSRLIGAPPGYVG-FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred -cHHHHhcCCCCCcc-cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 12222222211111 112233445555566789999999865
No 200
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=7.7e-05 Score=74.28 Aligned_cols=104 Identities=22% Similarity=0.173 Sum_probs=68.1
Q ss_pred CccEEEccCCcccccCCcC----CCCCceEEEccCCCCcccC--hhhhcCCCCccEEEecCCcCCCCCcCc-cCCcCCCE
Q 002024 364 DLTGISLMSNYIHEVPAML----ECPKLQVLLLQENSPLVIP--DKFFQGMKDLKVLDLSYILPLSLPPSL-SFLVDLRT 436 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~----~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~p~~~-~~l~~L~~ 436 (979)
.+..+.+.++.+.+...+. .++.++.|+|.+|.+++.. ..++.++++|++|+|+.+.-.....+. ..+.+|++
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3445666677777665432 6788899999999888543 345678889999998883221222222 35678888
Q ss_pred EEeCCCCCCC--C-ccccCCcCCcEEEcccCcCc
Q 002024 437 LRLEDCYLGD--L-SVIGELSNLEILSLCRSSIK 467 (979)
Q Consensus 437 L~L~~~~l~~--l-~~i~~L~~L~~L~Ls~~~l~ 467 (979)
|.|.|+.+.- . ..+..++.++.|++|.|+++
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 8888886532 2 44566777777777776544
No 201
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.41 E-value=0.0064 Score=64.70 Aligned_cols=171 Identities=10% Similarity=0.053 Sum_probs=92.8
Q ss_pred HHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcc------cc
Q 002024 20 KQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTI------CG 92 (979)
Q Consensus 20 ~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~------~~ 92 (979)
+.+...+..+. ...+.++|+.|+||+++|+.++...--..... ....+....++.+...-..+. .+
T Consensus 12 ~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~-------~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~ 84 (325)
T PRK06871 12 QQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQG-------DQPCGQCHSCHLFQAGNHPDFHILEPIDN 84 (325)
T ss_pred HHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCCHHHHHHhcCCCCCEEEEccccC
Confidence 44555555433 46778999999999999999998764221110 000111111111111100000 00
Q ss_pred -cchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCC-hhhhhcc-CCcceEEcC
Q 002024 93 -IEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRS-QGVCNQM-DAQKIFIVR 163 (979)
Q Consensus 93 -~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~~-~~~~~~~l~ 163 (979)
.-..+.+.++.+.+. .+++-++|+|+++.... .+.+...+-.-..+..+|.+|.+ ..+..-. +.-+.+.+.
T Consensus 85 ~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~ 164 (325)
T PRK06871 85 KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIH 164 (325)
T ss_pred CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCC
Confidence 001223333434333 36677888999987632 33333333233345555555554 4444222 234789999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch
Q 002024 164 TLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI 203 (979)
Q Consensus 164 ~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 203 (979)
+++.+++.+.+...... + ...+...++.++|.|.
T Consensus 165 ~~~~~~~~~~L~~~~~~--~----~~~~~~~~~l~~g~p~ 198 (325)
T PRK06871 165 PPEEQQALDWLQAQSSA--E----ISEILTALRINYGRPL 198 (325)
T ss_pred CCCHHHHHHHHHHHhcc--C----hHHHHHHHHHcCCCHH
Confidence 99999999999876431 1 1135667889999995
No 202
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.40 E-value=0.0018 Score=78.52 Aligned_cols=173 Identities=13% Similarity=0.128 Sum_probs=97.3
Q ss_pred CCCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 9 KGIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
...+.|.++.++++.+++.- ...+-|.++|++|+|||++|+.+++... ..| +.++...
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~~~---i~i~~~~---- 247 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--AYF---ISINGPE---- 247 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--CeE---EEEecHH----
Confidence 44578999999999887631 2246688999999999999999998764 212 2222211
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhhcCCCCC-CCCCcEE
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKVGIPLGE-DHEGCNI 141 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l~~~~~~-~~~~~~i 141 (979)
+ ..... + .....+..+.+......+.+|++|+++.... ...+...+.. ...+..+
T Consensus 248 --i----~~~~~----g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 248 --I----MSKYY----G-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred --H----hcccc----c-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 1 11100 0 1122334444444446678999999864310 1112111111 1223334
Q ss_pred EE-EcCChhhh-hc----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch
Q 002024 142 LL-TSRSQGVC-NQ----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI 203 (979)
Q Consensus 142 ii-Ttr~~~~~-~~----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 203 (979)
+| ||...... .. .+-...+.+...+.++..+++........-.. ......+++.+.|+--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCH
Confidence 44 55443211 11 12246788888899999999986664332211 1226778888888643
No 203
>PRK08181 transposase; Validated
Probab=97.37 E-value=0.00055 Score=70.84 Aligned_cols=105 Identities=21% Similarity=0.154 Sum_probs=59.1
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHH
Q 002024 24 EALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLW 103 (979)
Q Consensus 24 ~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 103 (979)
+++... .-+.|+|++|+|||.||.++++.... ....+.|+++ .++...+..... + .......
T Consensus 101 ~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f~~~------~~L~~~l~~a~~----~----~~~~~~l 162 (269)
T PRK08181 101 SWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTRT------TDLVQKLQVARR----E----LQLESAI 162 (269)
T ss_pred HHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHH--cCCceeeeeH------HHHHHHHHHHHh----C----CcHHHHH
Confidence 455432 46889999999999999999998763 3445667643 445555533321 0 1122333
Q ss_pred HHHhcCCeEEEEEcCCCCcc---ch-hhhcCCCCCCCCCcEEEEEcCCh
Q 002024 104 ERIKMEKRILVILDDVWERI---DL-QKVGIPLGEDHEGCNILLTSRSQ 148 (979)
Q Consensus 104 ~~l~~~~~~LlvlDd~~~~~---~~-~~l~~~~~~~~~~~~iiiTtr~~ 148 (979)
+.+. +.=||||||+.... .+ ..+...+.....+..+||||.-.
T Consensus 163 ~~l~--~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred HHHh--cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 4443 44589999996431 11 11222121111123588888754
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.37 E-value=0.0031 Score=77.07 Aligned_cols=107 Identities=21% Similarity=0.294 Sum_probs=61.7
Q ss_pred CCCchhHHHHHHHHHHHhcC-------CC--ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNN-------EN--VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~-------~~--~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...++|.+..++.+...+.. ++ ...+.++|+.|+|||++|+.+++.... .....+.++++.-.. ..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~--~~~~~i~id~se~~~-~~-- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD--SDDAMVRIDMSEFME-KH-- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc--CCCcEEEEEhHHhhh-hh--
Confidence 44678999999888877651 11 246789999999999999999976641 122344555543211 11
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
.+.+-+|.++.-.. ......+.+.+...+.-+|+||+++..
T Consensus 642 -~~~~LiG~~pgy~g-~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 -SVSRLVGAPPGYVG-YEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred -hHHHHhCCCCcccc-cchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 11222332222111 111223444444455579999999754
No 205
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0042 Score=62.24 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=95.8
Q ss_pred CchhHHHHHHHHHHHhc----------CC--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 11 IFESRKSIVKQLLEALN----------NE--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~----------~~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
.+.|=+...++|.+..- +. .-+-|.++||+|.||+.||++++-+.. . -|++++..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH------
Confidence 44566666666665531 22 247789999999999999999987765 2 24455433
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc---------cchhhhcCCC-------CCCCCCcEEE
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER---------IDLQKVGIPL-------GEDHEGCNIL 142 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~---------~~~~~l~~~~-------~~~~~~~~ii 142 (979)
.++...-+ ...+.+..+.+.-.++++.+|++|+++.. +.-..+...| ..+..|.-|+
T Consensus 201 --DLvSKWmG-----ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 201 --DLVSKWMG-----ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred --HHHHHHhc-----cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 22222211 22455666666666799999999999643 1111111111 1233455566
Q ss_pred EEcCChhhhhcc---CCcceEEcCCCCHHHH-HHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 143 LTSRSQGVCNQM---DAQKIFIVRTLLEEES-WILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 143 iTtr~~~~~~~~---~~~~~~~l~~L~~~e~-~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
-.|..+.+.... +-...|.+ ||.+..| ..+|.-+.+..... -.+...+++.+++.|+-
T Consensus 274 gATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~~MF~lhlG~tp~~-LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIYI-PLPEAHARARMFKLHLGDTPHV-LTEQDFKELARKTEGYS 335 (439)
T ss_pred ecCCCchhHHHHHHHHhhcceec-cCCcHHHhhhhheeccCCCccc-cchhhHHHHHhhcCCCC
Confidence 677765444211 12234444 4444444 46777777744332 22334677888877653
No 206
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.33 E-value=0.0062 Score=60.63 Aligned_cols=213 Identities=13% Similarity=0.097 Sum_probs=123.3
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh-h---ccCCCeEEEEEeccC---------
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ-E---SKRYDTVVMAVVSHN--------- 72 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~-~---~~~f~~~~~~~~~~~--------- 72 (979)
|.....+.++++.-..++.....++.+=..++||+|.||-|.+..+.++.- + +-+-+..-|.+.+..
T Consensus 9 pksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 9 PKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 445566788888889898888766677888999999999998888777642 1 111222334432222
Q ss_pred ------------CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe-EEEEEcCCCCc--cchhhhcCCCCCCCC
Q 002024 73 ------------LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR-ILVILDDVWER--IDLQKVGIPLGEDHE 137 (979)
Q Consensus 73 ------------~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~-~LlvlDd~~~~--~~~~~l~~~~~~~~~ 137 (979)
..-+.+.++++++++...+- +. ...+. -++|+..+++. +...+++...-.-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qi-----------e~-~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQI-----------ET-QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcch-----------hh-ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 11245555555555432110 00 01223 35667666643 222223222222335
Q ss_pred CcEEEEEcCCh-hhhhccCC-cceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHHHHHHhc
Q 002024 138 GCNILLTSRSQ-GVCNQMDA-QKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTVGRALKN 214 (979)
Q Consensus 138 ~~~iiiTtr~~-~~~~~~~~-~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~l~~ 214 (979)
.+|+|+.-.+. .+....++ --.++++..+++|....+.+......-..+ ++++.+|+++++|. -.|+-++-..-.+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp-~~~l~rIa~kS~~nLRrAllmlE~~~~~ 235 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP-KELLKRIAEKSNRNLRRALLMLEAVRVN 235 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc-HHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 66776643332 11111111 246789999999999999988854333222 67899999999885 5555555333222
Q ss_pred C---------CChhHHHHHHHHHhhc
Q 002024 215 R---------NNKYVWIDAAQQLKKS 231 (979)
Q Consensus 215 ~---------~~~~~~~~~~~~l~~~ 231 (979)
+ -+..+|+-+.+++...
T Consensus 236 n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 236 NEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred cccccccCCCCCCccHHHHHHHHHHH
Confidence 1 1246899998886554
No 207
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.33 E-value=0.0049 Score=64.43 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 16 KSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 16 ~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
.+.++++...+..+ +-|.+.|++|+|||++|+.+++... . ..+.+++....+..++.
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg--~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD--R---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC--C---CEEEEeCCccCCHHHHh
Confidence 34445555555543 4567999999999999999987442 1 24456665555544443
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.32 E-value=0.0017 Score=79.75 Aligned_cols=107 Identities=21% Similarity=0.268 Sum_probs=63.6
Q ss_pred CCCchhHHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNNE---------NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~---------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...++|.++.++.+...+... ....+.++|++|+|||++|+.+++.... .....+.++++.-.....
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~--~~~~~i~~d~s~~~~~~~-- 639 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD--DEDAMVRIDMSEYMEKHS-- 639 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC--CCCcEEEEechhhcccch--
Confidence 456899999999998887521 1346779999999999999999987642 223345555543222111
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
+.+-+|.++.-.. ......+.+.+...+..+++||+++..
T Consensus 640 --~~~l~g~~~g~~g-~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 --VARLIGAPPGYVG-YEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred --HHHhcCCCCCccC-cccccHHHHHHHcCCCcEEEEeccccC
Confidence 1111222211111 111233444444456679999999765
No 209
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.31 E-value=0.00036 Score=65.95 Aligned_cols=102 Identities=23% Similarity=0.194 Sum_probs=72.4
Q ss_pred CccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC-cccc-CCcCCcEEEcccCcCcccc--hhhccCccccEEecC
Q 002024 410 DLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL-SVIG-ELSNLEILSLCRSSIKEIP--ETFCRLSHLWLLDLD 485 (979)
Q Consensus 410 ~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l-~~i~-~L~~L~~L~Ls~~~l~~lp--~~i~~L~~L~~L~l~ 485 (979)
..-.+||+++-...+ +.|..+..|..|.|.+|+|+.+ +.+. -+++|+.|.+.+|++.++- ..+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 444556666322122 3466788999999999998888 4454 4678999999999998773 356778999999998
Q ss_pred CCCCcccc--CcchhccCcCCcEEEcccC
Q 002024 486 HCRQLALI--PHGVISQLDKLEEFYMWNT 512 (979)
Q Consensus 486 ~c~~~~~~--p~~~l~~L~~L~~L~l~~~ 512 (979)
++.....- -.-++.++++|+.|++.+.
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 86532211 1224789999999998765
No 210
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.29 E-value=7.6e-06 Score=90.77 Aligned_cols=125 Identities=27% Similarity=0.249 Sum_probs=89.8
Q ss_pred CcCCccEEEccCCcccccCCcC-CCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcC-ccCCcCCCEEE
Q 002024 361 TFEDLTGISLMSNYIHEVPAML-ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPS-LSFLVDLRTLR 438 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~-~~~l~~L~~L~ 438 (979)
-+..+...+.+.|.+..+.+.+ =++.++.|+|++|.+.... ++..+.+|+.|||+++.-..+|.. ...++ |..|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeee
Confidence 3445666677777777666444 4678888888888888765 477888888888888333266642 22333 88899
Q ss_pred eCCCCCCCCccccCCcCCcEEEcccCcCcccc--hhhccCccccEEecCCCC
Q 002024 439 LEDCYLGDLSVIGELSNLEILSLCRSSIKEIP--ETFCRLSHLWLLDLDHCR 488 (979)
Q Consensus 439 L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp--~~i~~L~~L~~L~l~~c~ 488 (979)
+++|.++.+..+.+|.+|+.||+++|-+.... ..++.|..|+.|.+.+|+
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 99988888888888999999999988665332 346677788888888864
No 211
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.27 E-value=0.00095 Score=76.94 Aligned_cols=52 Identities=25% Similarity=0.240 Sum_probs=42.4
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|.....++|+++.++.+...+......-|.|+|++|+|||++|+.+++...
T Consensus 60 rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 60 RPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 3455667999999999999887655556678999999999999999987543
No 212
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.25 E-value=0.014 Score=62.06 Aligned_cols=172 Identities=9% Similarity=0.062 Sum_probs=92.0
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcc-----c-
Q 002024 19 VKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTI-----C- 91 (979)
Q Consensus 19 l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~-----~- 91 (979)
-+++...+..+. ...+.++|+.|+||+++|+.++...--...-+. ..+.....+.+...-..+. .
T Consensus 12 ~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~--------~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (319)
T PRK06090 12 WQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE--------ACGFCHSCELMQSGNHPDLHVIKPEK 83 (319)
T ss_pred HHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC--------CCCCCHHHHHHHcCCCCCEEEEecCc
Confidence 345555554433 467889999999999999999987542111000 0000111111111100000 0
Q ss_pred ---ccchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEc-CChhhhhcc-CCcceE
Q 002024 92 ---GIEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTS-RSQGVCNQM-DAQKIF 160 (979)
Q Consensus 92 ---~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTt-r~~~~~~~~-~~~~~~ 160 (979)
.+. .+.+.++.+.+. .+++-++|+|+++... ..+.+...+-.-..+..+|.+| +...+..-+ +.-+.+
T Consensus 84 ~~~~I~-vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 84 EGKSIT-VEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred CCCcCC-HHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 000 122233333332 3556788999998753 2333333332333445555544 444444322 234788
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 161 IVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 161 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
.+.+++.+++.+.+..... + ....+++.++|.|+....+
T Consensus 163 ~~~~~~~~~~~~~L~~~~~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQGI---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred eCCCCCHHHHHHHHHHcCC---c------hHHHHHHHcCCCHHHHHHH
Confidence 9999999999998876421 1 1356789999999865443
No 213
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0041 Score=69.80 Aligned_cols=160 Identities=16% Similarity=0.096 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC--CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL--SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.-|.|.|+.|+|||+||+++++.+. +...-.+.+++|+.-. ..+.+++.+-..+. +.+ ..
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfs----------------e~~-~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFS----------------EAL-WY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHHHHH----------------HHH-hh
Confidence 5688999999999999999999987 4555567778877542 23333333322211 111 36
Q ss_pred CeEEEEEcCCCCcc--------c-----------hhhhcCCCCCCCCCcEEEEEcCChhhh-----hccCCcceEEcCCC
Q 002024 110 KRILVILDDVWERI--------D-----------LQKVGIPLGEDHEGCNILLTSRSQGVC-----NQMDAQKIFIVRTL 165 (979)
Q Consensus 110 ~~~LlvlDd~~~~~--------~-----------~~~l~~~~~~~~~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L 165 (979)
.+-++|+||++-.. + +..+...+.......++|.|.....-. ........+.++++
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 78999999985331 1 111111122222223445555443221 11123467789999
Q ss_pred CHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHHHH
Q 002024 166 LEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTVGR 210 (979)
Q Consensus 166 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 210 (979)
...+-.++++......-.... .+....+..+|.|+ |..++++..
T Consensus 574 ~~~~R~~IL~~~~s~~~~~~~-~~dLd~ls~~TEGy~~~DL~ifVe 618 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLSDIT-MDDLDFLSVKTEGYLATDLVIFVE 618 (952)
T ss_pred chhHHHHHHHHHHHhhhhhhh-hHHHHHHHHhcCCccchhHHHHHH
Confidence 999888888877753332222 22344588899885 777776543
No 214
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00013 Score=72.79 Aligned_cols=104 Identities=20% Similarity=0.244 Sum_probs=54.2
Q ss_pred CCCEEEeCCCCCCCC---cccc-CCcCCcEEEcccCcCccc---chhhccCccccEEecCCCCCccccCcchh-ccCcCC
Q 002024 433 DLRTLRLEDCYLGDL---SVIG-ELSNLEILSLCRSSIKEI---PETFCRLSHLWLLDLDHCRQLALIPHGVI-SQLDKL 504 (979)
Q Consensus 433 ~L~~L~L~~~~l~~l---~~i~-~L~~L~~L~Ls~~~l~~l---p~~i~~L~~L~~L~l~~c~~~~~~p~~~l-~~L~~L 504 (979)
.++.|.+.+|.|... ..++ ..+.++.|||.+|.+... -..+.+|++|++|+++.|..-..+.. . ..+.+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~--lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS--LPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc--Ccccccce
Confidence 344455555544333 2222 345566666666666533 23345667777777766542211111 2 244577
Q ss_pred cEEEcccCccccccccccchhccccccccceecccccC
Q 002024 505 EEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
+.|-+.|+...|..-. ..+..++.++.|.++.++
T Consensus 124 ~~lVLNgT~L~w~~~~----s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQST----SSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEEEcCCCCChhhhh----hhhhcchhhhhhhhccch
Confidence 7777777655443321 345566666777666553
No 215
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.22 E-value=0.0026 Score=67.89 Aligned_cols=102 Identities=10% Similarity=0.108 Sum_probs=65.8
Q ss_pred HHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEecc-CCCHHHHHHHHHHHhCCcccccchH
Q 002024 20 KQLLEALN-NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDT-VVMAVVSH-NLSIVKIQGEIAAVLGLTICGIEES 96 (979)
Q Consensus 20 ~~l~~~l~-~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~-~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~ 96 (979)
.++++.+. -+..+.+.|+|++|+|||||++.+++..... +-+. ++|+.+.. ...+.++.+.+...+.....+....
T Consensus 121 ~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 44566554 1234677899999999999999999987643 2233 45655544 4678889999888776543222221
Q ss_pred H------HHHHHHHHHh-cCCeEEEEEcCCCCc
Q 002024 97 A------RAGYLWERIK-MEKRILVILDDVWER 122 (979)
Q Consensus 97 ~------~~~~~~~~l~-~~~~~LlvlDd~~~~ 122 (979)
. .+..+.+++. ++++.+||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 1122233332 689999999998543
No 216
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.19 E-value=0.0023 Score=76.26 Aligned_cols=104 Identities=17% Similarity=0.257 Sum_probs=62.1
Q ss_pred CCCchhHHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNN---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...++|.++.++.|.+.+.. .....+.++||+|+|||.+|+.++.... .. .+.++++......
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~~---~i~id~se~~~~~--- 528 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IE---LLRFDMSEYMERH--- 528 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--CC---cEEeechhhcccc---
Confidence 34678999999999888751 1234678999999999999999988773 22 3344443321111
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
.+.+-+|.+..-.. ......+.+.+...+..+++||+++..
T Consensus 529 -~~~~LiG~~~gyvg-~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 529 -TVSRLIGAPPGYVG-FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred -cHHHHcCCCCCccc-ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 12222332211111 111123334444466679999999865
No 217
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.18 E-value=0.00045 Score=67.09 Aligned_cols=74 Identities=26% Similarity=0.284 Sum_probs=44.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
..-+.|+|+.|+|||.||.++++.... .-..+.|++. .++...+-. .... .......+++. +
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~~------~~L~~~l~~----~~~~----~~~~~~~~~l~--~ 108 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFITA------SDLLDELKQ----SRSD----GSYEELLKRLK--R 108 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEEH------HHHHHHHHC----CHCC----TTHCHHHHHHH--T
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEeec------Cceeccccc----cccc----cchhhhcCccc--c
Confidence 356889999999999999999998764 3345667654 344444422 1111 11233445554 3
Q ss_pred eEEEEEcCCCCc
Q 002024 111 RILVILDDVWER 122 (979)
Q Consensus 111 ~~LlvlDd~~~~ 122 (979)
.=||||||+...
T Consensus 109 ~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 VDLLILDDLGYE 120 (178)
T ss_dssp SSCEEEETCTSS
T ss_pred ccEeccccccee
Confidence 457779998654
No 218
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.0026 Score=71.54 Aligned_cols=157 Identities=15% Similarity=0.220 Sum_probs=89.2
Q ss_pred CCchhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 10 GIFESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
+.=+|.++..++|.+++. .-..+++.++||+|+|||.+|+.+|+-.. ..| +-+++..-.|..++-..--
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--RkF---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--RKF---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC--Cce---EEEeccccccHHhhcccce
Confidence 455889999999998875 23458999999999999999999998775 223 2345555444444322111
Q ss_pred HHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------------chhhhcCCCCC-CCCCcEEEE-
Q 002024 84 AVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------------DLQKVGIPLGE-DHEGCNILL- 143 (979)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------------~~~~l~~~~~~-~~~~~~iii- 143 (979)
..+| .. ...+.+-..+.. -..-|+.+|+||... +-..+...+.+ --.=|+|++
T Consensus 486 TYVG----AM--PGkiIq~LK~v~-t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFi 558 (906)
T KOG2004|consen 486 TYVG----AM--PGKIIQCLKKVK-TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFI 558 (906)
T ss_pred eeec----cC--ChHHHHHHHhhC-CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEE
Confidence 1111 01 122233333332 455677789987541 11111111111 112334443
Q ss_pred -EcCChhhh--hccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 144 -TSRSQGVC--NQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 144 -Ttr~~~~~--~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
|...-+-. ...+..+.|++.+...+|-+++-+++.
T Consensus 559 cTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 559 CTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYL 596 (906)
T ss_pred EeccccccCChhhhhhhheeeccCccHHHHHHHHHHhh
Confidence 33321111 122345889999999999988887776
No 219
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.017 Score=61.95 Aligned_cols=100 Identities=17% Similarity=0.153 Sum_probs=59.2
Q ss_pred HHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE-EEcCChhhhhc-cCCcceEEcCCCCHHH
Q 002024 98 RAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL-LTSRSQGVCNQ-MDAQKIFIVRTLLEEE 169 (979)
Q Consensus 98 ~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii-iTtr~~~~~~~-~~~~~~~~l~~L~~~e 169 (979)
.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-..+..+| +|++...+..- .+.-+.+.+.+++.++
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~ 195 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEA 195 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHH
Confidence 3344444443 3566688899998763 2344433333333455444 55554554422 2234789999999999
Q ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 170 SWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
..+.+.... ..+ ...++..++|.|....
T Consensus 196 ~~~~L~~~~--~~~-------~~~~l~~~~Gsp~~Al 223 (342)
T PRK06964 196 AAAWLAAQG--VAD-------ADALLAEAGGAPLAAL 223 (342)
T ss_pred HHHHHHHcC--CCh-------HHHHHHHcCCCHHHHH
Confidence 999997752 111 2335788899996443
No 220
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.0098 Score=64.05 Aligned_cols=173 Identities=11% Similarity=0.035 Sum_probs=92.6
Q ss_pred HHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCc-----ccc
Q 002024 19 VKQLLEALNNE-NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT-----ICG 92 (979)
Q Consensus 19 l~~l~~~l~~~-~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~-----~~~ 92 (979)
-+++...+..+ -...+.++|+.|+||+++|..++...--....+. ...+....++.+...-..+ ++.
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (334)
T PRK07993 11 YEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYTLTPEK 83 (334)
T ss_pred HHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEeccc
Confidence 34566666543 3467889999999999999999987632111000 0000011111111100000 000
Q ss_pred ---cchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCC-hhhhhc-cCCcceEE
Q 002024 93 ---IEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRS-QGVCNQ-MDAQKIFI 161 (979)
Q Consensus 93 ---~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~-~~~~~~-~~~~~~~~ 161 (979)
.=..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-..+..+|.+|.+ ..+..- .+.-+.+.
T Consensus 84 ~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~ 163 (334)
T PRK07993 84 GKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHY 163 (334)
T ss_pred ccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccccc
Confidence 001223333444433 3677789999998753 233333333232344555555544 444422 22336789
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 162 VRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 162 l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
+.+++.+++.+.+.+..+ .+ .+.+..+++.++|.|..
T Consensus 164 ~~~~~~~~~~~~L~~~~~--~~----~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 164 LAPPPEQYALTWLSREVT--MS----QDALLAALRLSAGAPGA 200 (334)
T ss_pred CCCCCHHHHHHHHHHccC--CC----HHHHHHHHHHcCCCHHH
Confidence 999999999988875432 11 22367789999999953
No 221
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.014 Score=65.71 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=91.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
.-|.++|++|.|||.||.+++.... .-++++..+ + -+.+.+|.. ++-+..+..+-...++
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~-------~~fisvKGP---E----lL~KyIGaS------Eq~vR~lF~rA~~a~P 761 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSN-------LRFISVKGP---E----LLSKYIGAS------EQNVRDLFERAQSAKP 761 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCC-------eeEEEecCH---H----HHHHHhccc------HHHHHHHHHHhhccCC
Confidence 3478999999999999999987665 235666544 1 223334432 3445666666667899
Q ss_pred EEEEEcCCCCccc-------------hhhhcCCCCC--CCCCcEEEE-EcCChh----hhhccCCcceEEcCCCCHHHHH
Q 002024 112 ILVILDDVWERID-------------LQKVGIPLGE--DHEGCNILL-TSRSQG----VCNQMDAQKIFIVRTLLEEESW 171 (979)
Q Consensus 112 ~LlvlDd~~~~~~-------------~~~l~~~~~~--~~~~~~iii-Ttr~~~----~~~~~~~~~~~~l~~L~~~e~~ 171 (979)
++++||+++..+. ...+...+.. +..|--|+. |||..- +.+.-+-...+.-+.-+..|-.
T Consensus 762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence 9999999976521 3333333322 234655664 555432 2222233466777777788888
Q ss_pred HHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 172 ILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 172 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
+++...+....-+. ....+.++.+++|+--|
T Consensus 842 ~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 842 EILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred HHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 88887764222111 12266788888887543
No 222
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.021 Score=62.14 Aligned_cols=127 Identities=21% Similarity=0.249 Sum_probs=74.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHH---HHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYL---WERI 106 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~---~~~l 106 (979)
+...+.+.|++|+|||+||..++.... ..| |--++...-- +.++.....++ .+.-
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S~--FPF--vKiiSpe~mi------------------G~sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSSD--FPF--VKIISPEDMI------------------GLSESAKCAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhcC--CCe--EEEeChHHcc------------------CccHHHHHHHHHHHHHHh
Confidence 345678999999999999999987654 333 3222211111 11122222222 2222
Q ss_pred hcCCeEEEEEcCCCCccchhhh------------cCCC---CCCCCCcEEEEEcCChhhhhccCC----cceEEcCCCCH
Q 002024 107 KMEKRILVILDDVWERIDLQKV------------GIPL---GEDHEGCNILLTSRSQGVCNQMDA----QKIFIVRTLLE 167 (979)
Q Consensus 107 ~~~~~~LlvlDd~~~~~~~~~l------------~~~~---~~~~~~~~iiiTtr~~~~~~~~~~----~~~~~l~~L~~ 167 (979)
.+++--+||+||+....+|-.+ ...+ ++.+...-|+-||-...+...|+. ...+.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 2466789999999766543332 2222 233333345556666777766653 36788999988
Q ss_pred -HHHHHHHHHHh
Q 002024 168 -EESWILFREAA 178 (979)
Q Consensus 168 -~e~~~l~~~~~ 178 (979)
++..+.+.+.-
T Consensus 675 ~~~~~~vl~~~n 686 (744)
T KOG0741|consen 675 GEQLLEVLEELN 686 (744)
T ss_pred hHHHHHHHHHcc
Confidence 77777777654
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.12 E-value=0.0017 Score=68.90 Aligned_cols=117 Identities=18% Similarity=0.177 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 14 SRKSIVKQLLEALNN----ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 14 gR~~~l~~l~~~l~~----~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
+|...+....+++.. ...+-++|+|+.|+|||.||.++++.... ....+.++++. ++...+...++..
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~--~g~~v~~~~~~------~l~~~lk~~~~~~ 206 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAK--KGVSSTLLHFP------EFIRELKNSISDG 206 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEEEHH------HHHHHHHHHHhcC
Confidence 666666666666542 13467889999999999999999999873 33445666543 4555555544311
Q ss_pred ccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchhh--hcCCCCC-C-CCCcEEEEEcCCh
Q 002024 90 ICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQK--VGIPLGE-D-HEGCNILLTSRSQ 148 (979)
Q Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~~--l~~~~~~-~-~~~~~iiiTtr~~ 148 (979)
......+.+ .+.=||||||+... .+|.. +...+.. . ..+..+|+||.-.
T Consensus 207 --------~~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 207 --------SVKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred --------cHHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 122334444 35668899999643 33432 2222211 1 2455688888743
No 224
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.12 E-value=0.0035 Score=76.20 Aligned_cols=47 Identities=32% Similarity=0.420 Sum_probs=37.4
Q ss_pred CCchhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 10 GIFESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+|.++..++|.+++. ....+.+.++|++|+|||++|+.+++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 346788888888887653 12335788999999999999999998875
No 225
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.013 Score=66.57 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=95.3
Q ss_pred CCchhHHHHHHHHHHHhc---------CCC---ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHH
Q 002024 10 GIFESRKSIVKQLLEALN---------NEN---VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVK 77 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~---------~~~---~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 77 (979)
..+=|=++...+|.+.++ +.+ ..=|.+|||+|.|||-+|+++|-+.. .-|+++-.+ +
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP----E 740 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP----E 740 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH----H
Confidence 344455666677777654 112 23477999999999999999997765 335666544 2
Q ss_pred HHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-----------hhh----hcCCCC---C-CCCC
Q 002024 78 IQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-----------LQK----VGIPLG---E-DHEG 138 (979)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-----------~~~----l~~~~~---~-~~~~ 138 (979)
++ -..+|. .+.-+..+.++-++..+++|+||++|..+. ++. +...+. + ...+
T Consensus 741 LL---NMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~ 811 (953)
T KOG0736|consen 741 LL---NMYVGQ------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQD 811 (953)
T ss_pred HH---HHHhcc------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCc
Confidence 21 122231 234456666777778999999999976521 111 222221 1 2344
Q ss_pred cEEEEEcCChhhhhc--c---CCcceEEcCCCCHHHHHH-HHHHHh--CCCCCCccchHHHHHHHHHcC
Q 002024 139 CNILLTSRSQGVCNQ--M---DAQKIFIVRTLLEEESWI-LFREAA--GTVVENSDLNSIAREVAAKCS 199 (979)
Q Consensus 139 ~~iiiTtr~~~~~~~--~---~~~~~~~l~~L~~~e~~~-l~~~~~--~~~~~~~~~~~~~~~i~~~~~ 199 (979)
--||-.|..+++.+. + +-...+.+++=+.+|... ++++.. +.-+++-+ ..+|+++|.
T Consensus 812 VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVd----L~eiAk~cp 876 (953)
T KOG0736|consen 812 VFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVD----LVEIAKKCP 876 (953)
T ss_pred eEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcC----HHHHHhhCC
Confidence 456666666655421 2 234677777777766654 444333 33444444 445666654
No 226
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.08 E-value=0.0059 Score=66.75 Aligned_cols=143 Identities=18% Similarity=0.122 Sum_probs=85.0
Q ss_pred CchhHHHHHHHHHHHhc-CC-CceEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeEEEEEe
Q 002024 11 IFESRKSIVKQLLEALN-NE-NVSVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTVVMAVV 69 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~-~~-~~~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~~~~~~ 69 (979)
.++|-+....++..+.. .+ ....+.++||.|+|||++|..+++...-.. ....+..+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~ 81 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP 81 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc
Confidence 35677777777777776 33 234588999999999999999999875222 1245566666
Q ss_pred ccCCC---HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEE
Q 002024 70 SHNLS---IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLT 144 (979)
Q Consensus 70 ~~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiT 144 (979)
+.... ..+.++++.+....... .++.-++|+|+++.... ...+...+-......++|++
T Consensus 82 s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~ 145 (325)
T COG0470 82 SDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILI 145 (325)
T ss_pred cccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEE
Confidence 65554 34445555544433211 36778899999987632 33333323233456667776
Q ss_pred cCCh-hhhhcc-CCcceEEcCCCCHHH
Q 002024 145 SRSQ-GVCNQM-DAQKIFIVRTLLEEE 169 (979)
Q Consensus 145 tr~~-~~~~~~-~~~~~~~l~~L~~~e 169 (979)
|... .+.... ..-..+++.+.+..+
T Consensus 146 ~n~~~~il~tI~SRc~~i~f~~~~~~~ 172 (325)
T COG0470 146 TNDPSKILPTIRSRCQRIRFKPPSRLE 172 (325)
T ss_pred cCChhhccchhhhcceeeecCCchHHH
Confidence 6633 333222 223667777733333
No 227
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.08 E-value=0.013 Score=62.03 Aligned_cols=148 Identities=13% Similarity=0.080 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-----CHHHHHHHHHHHhCCcccccchHHHHHHHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-----SIVKIQGEIAAVLGLTICGIEESARAGYLWE 104 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-----~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 104 (979)
.++.++|||++|.|||.+|+.++.+.... | +-++.+.-. ..+..++++++... +
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~--~---i~vsa~eL~sk~vGEsEk~IR~~F~~A~----------------~ 205 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE--P---IVMSAGELESENAGEPGKLIRQRYREAA----------------D 205 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC--e---EEEEHHHhhcCcCCcHHHHHHHHHHHHH----------------H
Confidence 45788999999999999999999987632 1 233222111 12222222222210 1
Q ss_pred HH-hcCCeEEEEEcCCCCcc--------ch------hhhcCC--------C------CCCCCCcEEEEEcCChhhhh--c
Q 002024 105 RI-KMEKRILVILDDVWERI--------DL------QKVGIP--------L------GEDHEGCNILLTSRSQGVCN--Q 153 (979)
Q Consensus 105 ~l-~~~~~~LlvlDd~~~~~--------~~------~~l~~~--------~------~~~~~~~~iiiTtr~~~~~~--~ 153 (979)
.. .++++++|+||++|... .. ..+... + .....+..||+||...+... .
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 11 14789999999986431 00 111110 0 01234566788887665431 1
Q ss_pred cC---CcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch
Q 002024 154 MD---AQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI 203 (979)
Q Consensus 154 ~~---~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 203 (979)
.+ -...| ..-+.++-.++++.......- . .....++++...|=|+
T Consensus 286 lRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~-~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--S-REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--C-HHHHHHHHHcCCCCCc
Confidence 11 12233 345667777788776653221 1 2446778887777665
No 228
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.07 E-value=0.0017 Score=63.74 Aligned_cols=50 Identities=28% Similarity=0.361 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002024 17 SIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV 68 (979)
Q Consensus 17 ~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~ 68 (979)
.+-....+.+. ...++.+.|++|+|||.||.+.+-+.-....|+.++++.
T Consensus 7 ~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 7 EEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp HHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred HHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34444444444 236899999999999999999998776668888888774
No 229
>PRK12377 putative replication protein; Provisional
Probab=97.07 E-value=0.0035 Score=64.08 Aligned_cols=91 Identities=16% Similarity=0.247 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccc
Q 002024 14 SRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTIC 91 (979)
Q Consensus 14 gR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 91 (979)
|....+........ ..+...+.|+|+.|+|||.||.++++.... ....++++++. ++...+-......
T Consensus 82 ~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~--~g~~v~~i~~~------~l~~~l~~~~~~~-- 151 (248)
T PRK12377 82 GQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLA--KGRSVIVVTVP------DVMSRLHESYDNG-- 151 (248)
T ss_pred hHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEHH------HHHHHHHHHHhcc--
Confidence 44444444443332 123357889999999999999999999873 34456776553 4445544433210
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEEcCCCC
Q 002024 92 GIEESARAGYLWERIKMEKRILVILDDVWE 121 (979)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~ 121 (979)
.....+.+.+ .+.-||||||+..
T Consensus 152 -----~~~~~~l~~l--~~~dLLiIDDlg~ 174 (248)
T PRK12377 152 -----QSGEKFLQEL--CKVDLLVLDEIGI 174 (248)
T ss_pred -----chHHHHHHHh--cCCCEEEEcCCCC
Confidence 0112334444 4567899999954
No 230
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.07 E-value=0.009 Score=61.33 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=96.2
Q ss_pred CCCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC-HHHHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS-IVKIQGEI 82 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~i 82 (979)
+...++|-.++-.++.+++. .+...-|.++||.|+|||.|......+.+ ..-....-+....... -+-.++.|
T Consensus 22 ~~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q--~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 22 PHINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ--ENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred CCcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH--hcCCeEEEEEECccchhhHHHHHHH
Confidence 45567888888888887775 23345677999999999999887777632 1112233333333322 23345555
Q ss_pred HHHhCCcccc-----cchHHHHHHHHHHHhc-----CCeEEEEEcCCCCccc-------hhhhcCCCCCCCCCcEEEEEc
Q 002024 83 AAVLGLTICG-----IEESARAGYLWERIKM-----EKRILVILDDVWERID-------LQKVGIPLGEDHEGCNILLTS 145 (979)
Q Consensus 83 ~~~l~~~~~~-----~~~~~~~~~~~~~l~~-----~~~~LlvlDd~~~~~~-------~~~l~~~~~~~~~~~~iiiTt 145 (979)
.+++...... .+-......+.+.+.+ +.++++|+|++|-... +.-+-..-....+-+.|.+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555332111 1122334556666653 3468899999876532 111111111234566778999
Q ss_pred CChhhh-------hccCCcc-eEEcCCCCHHHHHHHHHHHh
Q 002024 146 RSQGVC-------NQMDAQK-IFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 146 r~~~~~-------~~~~~~~-~~~l~~L~~~e~~~l~~~~~ 178 (979)
|-.-.. .+. +.+ .+-++.+.-++.+++++...
T Consensus 180 rld~lE~LEKRVKSRF-shr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRF-SHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhc-ccceeeccCCCChHHHHHHHHHHh
Confidence 954221 222 334 55567778888888888776
No 231
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.06 E-value=0.029 Score=61.29 Aligned_cols=44 Identities=34% Similarity=0.547 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002024 15 RKSIVKQLLEALNN---ENVSVIGLCGMGGVGKTTLAKEIGKQVQES 58 (979)
Q Consensus 15 R~~~l~~l~~~l~~---~~~~~i~i~G~~GiGKT~La~~~~~~~~~~ 58 (979)
|+.-.+.|.+.+.+ .+..+|+|.|.-|+|||++.+.+.+.....
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 34556667777764 457899999999999999999999988754
No 232
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.03 E-value=0.003 Score=77.34 Aligned_cols=107 Identities=18% Similarity=0.253 Sum_probs=62.3
Q ss_pred CCCchhHHHHHHHHHHHhcC-------C--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNN-------E--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~-------~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...++|.++.++.+...+.. + ....+.++||.|+|||+||+.+++..-. .....+-++.+.-.....+
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~--~~~~~~~~d~s~~~~~~~~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG--SEDAMIRLDMSEYMEKHTV- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC--CccceEEEEchhccccccH-
Confidence 46788999999999877641 1 1235678999999999999999987631 1123344444332221111
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
.+-+|.+. +.-.......+.+.+...+..+++||+++..
T Consensus 585 ---~~l~g~~~-gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 ---SKLIGSPP-GYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred ---HHhcCCCC-cccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 11122221 1111111223455555566689999999765
No 233
>PRK08118 topology modulation protein; Reviewed
Probab=97.02 E-value=0.00044 Score=66.51 Aligned_cols=35 Identities=34% Similarity=0.596 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhc-cCCCeEEE
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQES-KRYDTVVM 66 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~-~~f~~~~~ 66 (979)
+.|.|+|++|+||||+|+.+++..... .++|.++|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 468899999999999999999987643 44676776
No 234
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.01 E-value=0.0035 Score=61.89 Aligned_cols=87 Identities=23% Similarity=0.292 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc-CCCHHHHHHHHHHHhCCcccccc----hHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH-NLSIVKIQGEIAAVLGLTICGIE----ESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~----~~~~~~~~~~~ 105 (979)
+++|.++|+.|+||||.+..++.....+ -..+..++... .....+-++..++.++.+..... ....+....++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999999998888744 45677777654 34566777888999987753322 22233334444
Q ss_pred HhcCCeEEEEEcCC
Q 002024 106 IKMEKRILVILDDV 119 (979)
Q Consensus 106 l~~~~~~LlvlDd~ 119 (979)
....+.=++++|-.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 44344446777865
No 235
>PRK06526 transposase; Provisional
Probab=97.00 E-value=0.00084 Score=69.15 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=43.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
+-+.|+|++|+|||+||..++...... ...+.|+ +..++...+...... .........+ .+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~------t~~~l~~~l~~~~~~--------~~~~~~l~~l--~~~ 160 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFA------TAAQWVARLAAAHHA--------GRLQAELVKL--GRY 160 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhh------hHHHHHHHHHHHHhc--------CcHHHHHHHh--ccC
Confidence 568899999999999999999887632 2334453 333444444332110 1111222333 345
Q ss_pred EEEEEcCCCCc
Q 002024 112 ILVILDDVWER 122 (979)
Q Consensus 112 ~LlvlDd~~~~ 122 (979)
-+||+||+...
T Consensus 161 dlLIIDD~g~~ 171 (254)
T PRK06526 161 PLLIVDEVGYI 171 (254)
T ss_pred CEEEEcccccC
Confidence 68899999753
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=96.99 E-value=0.0018 Score=67.19 Aligned_cols=35 Identities=34% Similarity=0.339 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV 68 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~ 68 (979)
..+.|+|++|+|||+||..++..... ....+.+++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~~~~ 137 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVRFTT 137 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEe
Confidence 56789999999999999999887653 233455554
No 237
>PRK06921 hypothetical protein; Provisional
Probab=96.98 E-value=0.0021 Score=66.84 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV 69 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~ 69 (979)
...+.++|+.|+|||.||.++++....+. ...++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 46789999999999999999999876331 345677764
No 238
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=4.4e-05 Score=75.18 Aligned_cols=81 Identities=22% Similarity=0.315 Sum_probs=59.4
Q ss_pred CCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCc-chhccCcCCcEEE
Q 002024 430 FLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPH-GVISQLDKLEEFY 508 (979)
Q Consensus 430 ~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~-~~l~~L~~L~~L~ 508 (979)
++.+.+.|+.+||.+.+++...+++.|++|.||-|+|++|. .+..|++|+.|++..|. +.++.. ..+.+|++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 45667778888888888888888888888888888888873 57788888888888754 333322 1146677777777
Q ss_pred cccC
Q 002024 509 MWNT 512 (979)
Q Consensus 509 l~~~ 512 (979)
+..|
T Consensus 95 L~EN 98 (388)
T KOG2123|consen 95 LDEN 98 (388)
T ss_pred hccC
Confidence 7654
No 239
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.95 E-value=0.0053 Score=73.85 Aligned_cols=158 Identities=18% Similarity=0.217 Sum_probs=86.4
Q ss_pred CCCchhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i 82 (979)
....+|.++..++|.+++. ......+.++|++|+|||++|+.++.... ..|. -+..+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~~~~---~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--RKYV---RMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--CCEE---EEEcCCCCCHHHhccch
Confidence 3457899999999988775 12346889999999999999999998764 2332 23334333333322211
Q ss_pred HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc------hhhhcCCCCC---------------CCCCcEE
Q 002024 83 AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID------LQKVGIPLGE---------------DHEGCNI 141 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~------~~~l~~~~~~---------------~~~~~~i 141 (979)
....+. . .....+...... ...-++++|+++.... ...+...+.+ ...+..+
T Consensus 396 ~~~~g~----~--~G~~~~~l~~~~-~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTYIGS----M--PGKLIQKMAKVG-VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hccCCC----C--CcHHHHHHHhcC-CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 111111 0 111111112111 2334788999865421 1222221211 1233444
Q ss_pred EEEcCChhhhh-ccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 142 LLTSRSQGVCN-QMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 142 iiTtr~~~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
|.|+....+.. ..+.-..+++.+++.+|-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 55554432221 11233678999999999988887766
No 240
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0051 Score=62.51 Aligned_cols=27 Identities=33% Similarity=0.495 Sum_probs=24.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQES 58 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~ 58 (979)
|+|.++||+|.|||+|++++|++..++
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee
Confidence 889999999999999999999987654
No 241
>PRK04132 replication factor C small subunit; Provisional
Probab=96.93 E-value=0.015 Score=69.41 Aligned_cols=157 Identities=15% Similarity=0.049 Sum_probs=93.8
Q ss_pred EEc--CCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEE
Q 002024 36 LCG--MGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRIL 113 (979)
Q Consensus 36 i~G--~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~L 113 (979)
+.| |.|+||||+|..++++.--...-..++-+++++..+...+ +++++.+....+ +..++.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~--------------~~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP--------------IGGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC--------------cCCCCCEE
Confidence 458 8899999999999998632111134667777765555533 333333221100 00134579
Q ss_pred EEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCCh-hhhhcc-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchH
Q 002024 114 VILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQ-GVCNQM-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNS 189 (979)
Q Consensus 114 lvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~ 189 (979)
+|+|+++... ....+...+-.-....++|.++.+. .+.... +.-..+++.+++.++....+.+.+.... -.-.++
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~~e 712 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELTEE 712 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCCHH
Confidence 9999998763 3444433332223455566555543 333222 2237899999999999988887764322 112245
Q ss_pred HHHHHHHHcCCCch-HHHHH
Q 002024 190 IAREVAAKCSGLPI-AILTV 208 (979)
Q Consensus 190 ~~~~i~~~~~g~Pl-al~~~ 208 (979)
....|++.++|-+. |+..+
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 78899999999764 44444
No 242
>PRK04296 thymidine kinase; Provisional
Probab=96.93 E-value=0.0013 Score=64.98 Aligned_cols=111 Identities=16% Similarity=0.111 Sum_probs=63.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc--cch-HHHHHHHHHHHhc
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG--IEE-SARAGYLWERIKM 108 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~--~~~-~~~~~~~~~~l~~ 108 (979)
.++.|+|+.|.||||+|..++.+... +...++.+. ...+.+.....+++.++.+... ... ......+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~--~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE--RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 57789999999999999999998863 333444442 1112222234456666654332 111 111222222 33
Q ss_pred CCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 109 EKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 109 ~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
++.-+||+|+++-. +++..+...+ ...|..|++|.++...
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 45568999999653 2233332221 2467789999988543
No 243
>PRK07261 topology modulation protein; Provisional
Probab=96.92 E-value=0.0037 Score=60.50 Aligned_cols=34 Identities=29% Similarity=0.501 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhc-cCCCeEEE
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQES-KRYDTVVM 66 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~-~~f~~~~~ 66 (979)
.|.|+|++|+||||||+.++...... -+.|.+.|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 47899999999999999998775421 23455555
No 244
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.91 E-value=0.0043 Score=62.68 Aligned_cols=47 Identities=19% Similarity=0.234 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
.+++.|+|++|+|||+++.+++.... .....++|++... ++...+.+
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~--~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA--RQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCC-CCHHHHHH
Confidence 47899999999999999999988875 2356789999875 55555444
No 245
>PTZ00494 tuzin-like protein; Provisional
Probab=96.90 E-value=0.081 Score=56.81 Aligned_cols=164 Identities=11% Similarity=0.165 Sum_probs=96.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN---NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~---~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
.++....+|.|+++-..+.+.|. ...++++.+.|..|.||++|++....+... ..+++++.... +-++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~E---DtLrs 437 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTE---DTLRS 437 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCc---chHHH
Confidence 45567789999999888888876 334689999999999999999999876642 35677776554 44667
Q ss_pred HHHHhCCcccccchHHHHHHHHH------HHhcCCeEEEEE--cCCCCccc-hhhhcCCCCCCCCCcEEEEEcCChhhh-
Q 002024 82 IAAVLGLTICGIEESARAGYLWE------RIKMEKRILVIL--DDVWERID-LQKVGIPLGEDHEGCNILLTSRSQGVC- 151 (979)
Q Consensus 82 i~~~l~~~~~~~~~~~~~~~~~~------~l~~~~~~Llvl--Dd~~~~~~-~~~l~~~~~~~~~~~~iiiTtr~~~~~- 151 (979)
|++.++.+.-+.-.+ ..+.+.+ ....++.-+||+ -+-.+..- +.+. ..+..+..-+.|++----+.+-
T Consensus 438 VVKALgV~nve~CGD-lLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 438 VVRALGVSNVEVCGD-LLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHhCCCChhhhcc-HHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhch
Confidence 888888764332211 1111111 112344444443 33322211 1111 0122233344455432222111
Q ss_pred --hccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 152 --NQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 152 --~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
.....-..|.+++++.++|.++.+...
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhccc
Confidence 111234789999999999999887644
No 246
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.90 E-value=0.0019 Score=64.81 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=29.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV 69 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~ 69 (979)
.++|.|.+|+|||+++..+..... ..|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEec
Confidence 566999999999999999998876 67877777754
No 247
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0038 Score=72.79 Aligned_cols=106 Identities=19% Similarity=0.242 Sum_probs=65.5
Q ss_pred CCCchhHHHHHHHHHHHhc---------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALN---------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~---------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...++|.++.++.+.+.+. ..+.....+.||.|+|||-||+++++..-..+ +..+-+ ++.+..
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~------DMSEy~ 561 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRI------DMSEYM 561 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceee------chHHHH
Confidence 4568999999999988874 12345667899999999999999998764211 223333 333333
Q ss_pred HHH-HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 80 GEI-AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 80 ~~i-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
..- ++.+-+.+++--.-..-.++-+....++..++.||++...
T Consensus 562 EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 562 EKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc
Confidence 221 2333233332222222456666666455568889999754
No 248
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.011 Score=68.55 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=86.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
..+.+.++||+|.|||.||++++.... ..| +.+... .+.....+ ...+.+..+.+.-.+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~--~~f-----i~v~~~--------~l~sk~vG-----esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESR--SRF-----ISVKGS--------ELLSKWVG-----ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCC--CeE-----EEeeCH--------HHhccccc-----hHHHHHHHHHHHHHcC
Confidence 346788999999999999999998654 223 222211 11111110 1123344444444468
Q ss_pred CeEEEEEcCCCCccc-------------hhhhcCCCC--CCCCCcEEEEEcCChhhhhc-----cCCcceEEcCCCCHHH
Q 002024 110 KRILVILDDVWERID-------------LQKVGIPLG--EDHEGCNILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEE 169 (979)
Q Consensus 110 ~~~LlvlDd~~~~~~-------------~~~l~~~~~--~~~~~~~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e 169 (979)
.+.+|++|+++.... ...+...+. ....+..||-+|........ .+-...+.++.-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 899999999865411 122222222 12234345556655443321 1335789999999999
Q ss_pred HHHHHHHHhCCCCCCccchHHHHHHHHHcCC
Q 002024 170 SWILFREAAGTVVENSDLNSIAREVAAKCSG 200 (979)
Q Consensus 170 ~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g 200 (979)
..+.|..+...........-....+++.+.|
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 9999999986433321122234555555555
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.84 E-value=0.0094 Score=60.80 Aligned_cols=92 Identities=16% Similarity=0.260 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc
Q 002024 15 RKSIVKQLLEALNN--ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG 92 (979)
Q Consensus 15 R~~~l~~l~~~l~~--~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 92 (979)
....+..+.++... .+...+.++|++|+|||+||.++++.... ....++++++ .++...+-..+.. .+
T Consensus 81 q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it~------~~l~~~l~~~~~~--~~ 150 (244)
T PRK07952 81 QMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIITV------ADIMSAMKDTFSN--SE 150 (244)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEH------HHHHHHHHHHHhh--cc
Confidence 33455555555532 22356889999999999999999998863 3345667643 4455444444321 11
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 93 IEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
.....+.+.+. +.=+|||||+...
T Consensus 151 ----~~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 151 ----TSEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ----ccHHHHHHHhc--cCCEEEEeCCCCC
Confidence 11223444443 3448889999654
No 250
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.82 E-value=0.0056 Score=66.13 Aligned_cols=89 Identities=16% Similarity=0.255 Sum_probs=59.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc-CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH-NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
..++.++|+.|+||||++..++.....+.....+..++... .....+-++..++.++.+................+. +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-N 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc-C
Confidence 47899999999999999999998865333334566666443 234556667777888877654444333444444443 3
Q ss_pred CeEEEEEcCCCC
Q 002024 110 KRILVILDDVWE 121 (979)
Q Consensus 110 ~~~LlvlDd~~~ 121 (979)
+-++++|....
T Consensus 216 -~DlVLIDTaG~ 226 (374)
T PRK14722 216 -KHMVLIDTIGM 226 (374)
T ss_pred -CCEEEEcCCCC
Confidence 45566998753
No 251
>PHA00729 NTP-binding motif containing protein
Probab=96.81 E-value=0.0063 Score=60.43 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=27.8
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 22 LLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 22 l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+.+.+...+...|.|+|++|+|||+||..+++...
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44444455566789999999999999999998753
No 252
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.79 E-value=0.0058 Score=64.66 Aligned_cols=84 Identities=23% Similarity=0.173 Sum_probs=54.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccc------ccchHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTIC------GIEESARAGYLWE 104 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~~~~ 104 (979)
.+++-|+|++|+||||||.+++..... .-..++|++..+.++.. .++.++.+.+ ....+.....+..
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~--~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~ 127 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQK--AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAET 127 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 478999999999999999999887763 34567899877665543 3555554321 1111222333333
Q ss_pred HHhcCCeEEEEEcCCCC
Q 002024 105 RIKMEKRILVILDDVWE 121 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~ 121 (979)
.+.++..-++|+|.+..
T Consensus 128 li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 128 LVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HhhccCCcEEEEcchhh
Confidence 33356677999999853
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.0046 Score=63.83 Aligned_cols=92 Identities=25% Similarity=0.270 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc
Q 002024 14 SRKSIVKQLLEALN-NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG 92 (979)
Q Consensus 14 gR~~~l~~l~~~l~-~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 92 (979)
++...+..+.+... -+...-++++|++|+|||.||.+++++.. .....|.++++ .++..++.......
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~--~~g~sv~f~~~------~el~~~Lk~~~~~~--- 155 (254)
T COG1484 87 IDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL--KAGISVLFITA------PDLLSKLKAAFDEG--- 155 (254)
T ss_pred hhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEEH------HHHHHHHHHHHhcC---
Confidence 45555555543331 11446788999999999999999999998 33445666644 45555555554320
Q ss_pred cchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 93 IEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 93 ~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
.....+.+.+ .+-=||||||+...
T Consensus 156 ----~~~~~l~~~l--~~~dlLIiDDlG~~ 179 (254)
T COG1484 156 ----RLEEKLLREL--KKVDLLIIDDIGYE 179 (254)
T ss_pred ----chHHHHHHHh--hcCCEEEEecccCc
Confidence 1112222223 24458899998653
No 254
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.76 E-value=0.0054 Score=65.66 Aligned_cols=101 Identities=13% Similarity=0.195 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
.-+.++|+.|+|||.||.++++....+ ...|+|+++. ++...+...-. . . ........+.+. .-
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~--g~~V~y~t~~------~l~~~l~~~~~-~--~---~~~~~~~~~~l~--~~ 247 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTAD------ELIEILREIRF-N--N---DKELEEVYDLLI--NC 247 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEEHH------HHHHHHHHHHh-c--c---chhHHHHHHHhc--cC
Confidence 678899999999999999999988733 3467777653 33333332211 0 0 011111234343 33
Q ss_pred EEEEEcCCCCc--cch--hhhcCCCCCC-CCCcEEEEEcCCh
Q 002024 112 ILVILDDVWER--IDL--QKVGIPLGED-HEGCNILLTSRSQ 148 (979)
Q Consensus 112 ~LlvlDd~~~~--~~~--~~l~~~~~~~-~~~~~iiiTtr~~ 148 (979)
=||||||+... .+| ..+...+... ..+..+||||.-.
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLS 289 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 47999999554 111 1221111111 2245688888753
No 255
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.75 E-value=0.015 Score=62.41 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc-
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM- 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 108 (979)
.++|+|+|++|+||||++..++..... .-..+..++..... ...+-++..++.++.+..............+.+..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~--~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~ 318 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 318 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHH--cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhc
Confidence 478999999999999999999987762 23456666654432 22233334455666554433333444444444442
Q ss_pred CCeEEEEEcCCCC
Q 002024 109 EKRILVILDDVWE 121 (979)
Q Consensus 109 ~~~~LlvlDd~~~ 121 (979)
.+.=++++|-...
T Consensus 319 ~~~DvVLIDTaGR 331 (436)
T PRK11889 319 ARVDYILIDTAGK 331 (436)
T ss_pred cCCCEEEEeCccc
Confidence 2345677887643
No 256
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.74 E-value=0.0083 Score=61.95 Aligned_cols=56 Identities=23% Similarity=0.245 Sum_probs=39.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCeEEEEEeccCCCHHHHHHHHHHHhC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKR----YDTVVMAVVSHNLSIVKIQGEIAAVLG 87 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~i~~~l~ 87 (979)
..++.|+|++|+|||++|.+++........ ...++|++....++...+ .++++..+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~ 78 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFG 78 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhc
Confidence 478899999999999999999866432121 357899998877665444 33444443
No 257
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.73 E-value=0.016 Score=68.79 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=92.2
Q ss_pred CchhHHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 11 IFESRKSIVKQLLEALN---N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~---~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
.+.|-+...+++.+... . .-.+-|.++|++|+|||++|+.++..... .| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~--~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--PF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--CE---EEEehHH------h
Confidence 34566666655554432 1 11234889999999999999999887652 22 2222221 1
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------------hhhhcCCCCC--CCCCcE
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------------LQKVGIPLGE--DHEGCN 140 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------------~~~l~~~~~~--~~~~~~ 140 (979)
... ..+ .. ......+.+......+.++++|+++.... +..+...+.. ...+..
T Consensus 222 ~~~---~~g-----~~-~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vi 292 (644)
T PRK10733 222 VEM---FVG-----VG-ASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGII 292 (644)
T ss_pred HHh---hhc-----cc-HHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCee
Confidence 110 001 01 12223333333446788999999865410 1122111111 123445
Q ss_pred EEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 141 ILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 141 iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
+|.||...+.... -+-.+.+.++..+.++..+++..+.....-.++.. ...+++.+.|+
T Consensus 293 vIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d--~~~la~~t~G~ 356 (644)
T PRK10733 293 VIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDID--AAIIARGTPGF 356 (644)
T ss_pred EEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCC--HHHHHhhCCCC
Confidence 6667776554321 12357888999999999999988876443222211 44577777664
No 258
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.053 Score=53.39 Aligned_cols=152 Identities=10% Similarity=0.080 Sum_probs=83.9
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+=|-++.++++.+.+- -...+-+..|||+|.|||-+||+.+..... .| +... .
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a--TF-----LKLA---g 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA--TF-----LKLA---G 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc--hH-----HHhc---c
Confidence 45566788889998887752 123466789999999999999999876641 12 1000 0
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc-------------c---hhhhcCCCCCC--C
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI-------------D---LQKVGIPLGED--H 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~-------------~---~~~l~~~~~~~--~ 136 (979)
-++++.+-+ +..+.+.....--+...+.+|++|+++... . +-.+...+... .
T Consensus 239 -----PQLVQMfIG-----dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~ 308 (424)
T KOG0652|consen 239 -----PQLVQMFIG-----DGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSD 308 (424)
T ss_pred -----hHHHhhhhc-----chHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCc
Confidence 122222211 112233333332335678999999876431 0 11122222222 2
Q ss_pred CCcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 137 EGCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
...+||..|..-++. ..-+-.+.++++--+.+.-..+++-+..
T Consensus 309 ~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsR 356 (424)
T KOG0652|consen 309 DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSR 356 (424)
T ss_pred cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhh
Confidence 355777777655444 2223457788765555555566665554
No 259
>PRK06696 uridine kinase; Validated
Probab=96.72 E-value=0.0055 Score=62.44 Aligned_cols=44 Identities=30% Similarity=0.484 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 14 SRKSIVKQLLEALN---NENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 14 gR~~~l~~l~~~l~---~~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
.|++.+++|.+.+. .+...+|+|.|++|+||||+|+.+++....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58888888888874 445689999999999999999999998863
No 260
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.66 E-value=0.016 Score=59.33 Aligned_cols=49 Identities=18% Similarity=0.153 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEeccCCCHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK----RYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~ 79 (979)
..++.|+|++|+|||++|.+++....... .-..++|++....++...+.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 47899999999999999999988764221 11568899887776665443
No 261
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.66 E-value=0.017 Score=60.91 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=51.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.+++.|+|++|+||||++..++.....+..-..|..++..... ...+-+...++.++.+..............+.+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~~-- 271 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRLR-- 271 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHcc--
Confidence 4689999999999999999999887643222456677655422 2233334445555655443333333444444443
Q ss_pred CeEEEEEcCC
Q 002024 110 KRILVILDDV 119 (979)
Q Consensus 110 ~~~LlvlDd~ 119 (979)
..=++++|..
T Consensus 272 ~~d~vliDt~ 281 (282)
T TIGR03499 272 DKDLILIDTA 281 (282)
T ss_pred CCCEEEEeCC
Confidence 2346777753
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.66 E-value=0.0079 Score=56.59 Aligned_cols=27 Identities=33% Similarity=0.343 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+++++|++|.||||+.+.++...+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 347999999999999999999998765
No 263
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.014 Score=65.27 Aligned_cols=106 Identities=21% Similarity=0.253 Sum_probs=61.7
Q ss_pred hhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHH
Q 002024 13 ESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAV 85 (979)
Q Consensus 13 vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~ 85 (979)
.++...++.|.+.+. -...++|+|+|++|+||||++..++..+..+.....+..++.... ....+.++...+.
T Consensus 326 ~~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~i 405 (559)
T PRK12727 326 RGRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQ 405 (559)
T ss_pred hHHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcc
Confidence 345555555555442 123479999999999999999999887654333455666665432 1223333344455
Q ss_pred hCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCC
Q 002024 86 LGLTICGIEESARAGYLWERIKMEKRILVILDDVW 120 (979)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~ 120 (979)
++................+++. ..=+||+|...
T Consensus 406 Lgv~v~~a~d~~~L~~aL~~l~--~~DLVLIDTaG 438 (559)
T PRK12727 406 LGIAVHEADSAESLLDLLERLR--DYKLVLIDTAG 438 (559)
T ss_pred cCceeEecCcHHHHHHHHHHhc--cCCEEEecCCC
Confidence 5554443333334444555443 35578889874
No 264
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.65 E-value=0.0079 Score=63.68 Aligned_cols=83 Identities=25% Similarity=0.249 Sum_probs=53.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc-----cchHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG-----IEESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 105 (979)
.+++-|+|++|+|||+||.+++..... ....++|++..+.+++. .++.++.+.+. ......+..+.+.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~--~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~ 127 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQK--LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADS 127 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHH
Confidence 478899999999999999999887763 34568899887766653 34455443111 1111222233333
Q ss_pred H-hcCCeEEEEEcCCC
Q 002024 106 I-KMEKRILVILDDVW 120 (979)
Q Consensus 106 l-~~~~~~LlvlDd~~ 120 (979)
+ .++..-++|+|.+.
T Consensus 128 li~s~~~~lIVIDSva 143 (325)
T cd00983 128 LVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHhccCCCEEEEcchH
Confidence 3 34567789999974
No 265
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.081 Score=57.19 Aligned_cols=152 Identities=13% Similarity=0.084 Sum_probs=80.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
|=-.++||+|.|||+++.++|+... |+.. =+......+- .....+.-. -..+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n---------------------~dLr~LL~~--t~~k 287 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLD---------------------SDLRHLLLA--TPNK 287 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCc---------------------HHHHHHHHh--CCCC
Confidence 3457899999999999999998775 3322 1112111111 111111111 3567
Q ss_pred EEEEEcCCCCccc-----------hh---------hhcCC---CCCCCCCcE-EEEEcCChhhh-----hccCCcceEEc
Q 002024 112 ILVILDDVWERID-----------LQ---------KVGIP---LGEDHEGCN-ILLTSRSQGVC-----NQMDAQKIFIV 162 (979)
Q Consensus 112 ~LlvlDd~~~~~~-----------~~---------~l~~~---~~~~~~~~~-iiiTtr~~~~~-----~~~~~~~~~~l 162 (979)
-+||+.|+|-..+ .. -+.-. ++..+.+-| ||.||...+-. ..-+....+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 8888888764311 00 01111 111122234 45566654333 32234568899
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHH-HHHhcC
Q 002024 163 RTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVG-RALKNR 215 (979)
Q Consensus 163 ~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~-~~l~~~ 215 (979)
.--+.+....|+.++.+...++. +..+|.+.-.|.-+.=..++ .+|..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~~h~----L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEEDHR----LFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCCCcc----hhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999999999999997544332 34444444444433333333 344444
No 266
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.013 Score=63.99 Aligned_cols=89 Identities=18% Similarity=0.173 Sum_probs=56.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc--cCCCeEEEEEeccCC-CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQES--KRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLTICGIEESARAGYLWERIK 107 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~--~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~ 107 (979)
.++|.++|+.|+||||.+..++..+... ..-..|..+++..-. ...+-++..++.++.+.................
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 5789999999999999999999876532 123456666665421 223335666777777654444333333333333
Q ss_pred cCCeEEEEEcCCCC
Q 002024 108 MEKRILVILDDVWE 121 (979)
Q Consensus 108 ~~~~~LlvlDd~~~ 121 (979)
...-++++|.+..
T Consensus 253 -~~~DlVLIDTaGr 265 (388)
T PRK12723 253 -KDFDLVLVDTIGK 265 (388)
T ss_pred -CCCCEEEEcCCCC
Confidence 3456888998753
No 267
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.046 Score=58.72 Aligned_cols=156 Identities=15% Similarity=0.104 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccC--------------------CCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR--------------------YDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~--------------------f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
.-...+.++|+.|+|||++|+.++...--... ...+.++....... .-+.
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~----------~~g~ 88 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEP----------ENGR 88 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccc----------cccc
Confidence 33467889999999999999999987532110 01122221110000 0000
Q ss_pred cccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCChh-hhhcc-CCcceE
Q 002024 89 TICGIEESARAGYLWERIK----MEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRSQG-VCNQM-DAQKIF 160 (979)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~~~-~~~~~-~~~~~~ 160 (979)
....+ ..+.+..+.+.+. .+++-++|+|+++.... ...+...+.....+..+|++|.+.+ +.... ..-+.+
T Consensus 89 ~~~~I-~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~ 167 (325)
T PRK08699 89 KLLQI-KIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKM 167 (325)
T ss_pred cCCCc-CHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhh
Confidence 00000 1122333334333 24455666788876522 2222111111123455666666543 33221 223788
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 161 IVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 161 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
.+.+++.+++.+.+.+.. .. .. .. .+..++|.|+.
T Consensus 168 ~~~~~~~~~~~~~L~~~~--~~--~~----~~-~l~~~~g~p~~ 202 (325)
T PRK08699 168 VLPAPSHEEALAYLRERG--VA--EP----EE-RLAFHSGAPLF 202 (325)
T ss_pred cCCCCCHHHHHHHHHhcC--CC--cH----HH-HHHHhCCChhh
Confidence 899999999998887642 11 11 11 23568898854
No 268
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.62 E-value=0.0045 Score=69.90 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=55.5
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHH-
Q 002024 28 NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERI- 106 (979)
Q Consensus 28 ~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l- 106 (979)
.++-++..++|++|+||||||..+|+... ..|+=|.+|+..+...+-..|...+.... .+
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s--------------~l~ 383 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHS--------------VLD 383 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhcc--------------ccc
Confidence 34568899999999999999999987664 45778888888888777666655543221 11
Q ss_pred hcCCeEEEEEcCCCCc
Q 002024 107 KMEKRILVILDDVWER 122 (979)
Q Consensus 107 ~~~~~~LlvlDd~~~~ 122 (979)
.++++.=+|+|++|..
T Consensus 384 adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGA 399 (877)
T ss_pred cCCCcceEEEecccCC
Confidence 1367777888988764
No 269
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.60 E-value=0.019 Score=59.43 Aligned_cols=58 Identities=29% Similarity=0.335 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc----cCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQES----KRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..+.=|+|++|+|||+||.+++-..... ..-..++|++-...++...+. +|++..+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~ 99 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLD 99 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccc
Confidence 3678999999999999999987654321 223579999999999887775 466666543
No 270
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.60 E-value=0.0073 Score=68.70 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCCCCCchhHHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002024 6 SSSKGIFESRKSIVKQLLEALNN-----ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV 68 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~-----~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~ 68 (979)
|.....++--++.++++..|+.. ...+++.++||+|+||||.++.++++.. |+.+-|..
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~n 78 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWIN 78 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecC
Confidence 44555566667788889988862 2357889999999999999999998864 44455654
No 271
>PRK09354 recA recombinase A; Provisional
Probab=96.59 E-value=0.0097 Score=63.52 Aligned_cols=84 Identities=24% Similarity=0.188 Sum_probs=55.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc------cchHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG------IEESARAGYLWE 104 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 104 (979)
.+++-|+|++|+|||+||.+++.... .....++|++..+.++.. .++.++.+... ...+.....+..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~--~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~ 132 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ--KAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADT 132 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 47889999999999999999988776 334668899988776653 45555544211 111222222222
Q ss_pred HHhcCCeEEEEEcCCCC
Q 002024 105 RIKMEKRILVILDDVWE 121 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~ 121 (979)
.+.++..-++|+|.+..
T Consensus 133 li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 133 LVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HhhcCCCCEEEEeChhh
Confidence 33356677899999753
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.59 E-value=0.0019 Score=58.61 Aligned_cols=24 Identities=46% Similarity=0.664 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|+|.|++|+||||+|+.+++...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 588999999999999999998863
No 273
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.58 E-value=0.0011 Score=65.76 Aligned_cols=88 Identities=18% Similarity=0.238 Sum_probs=58.7
Q ss_pred CcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccC--cCc-ccchhhccCccccEEecCCCCC--ccccCcchhc
Q 002024 425 PPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRS--SIK-EIPETFCRLSHLWLLDLDHCRQ--LALIPHGVIS 499 (979)
Q Consensus 425 p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~--~l~-~lp~~i~~L~~L~~L~l~~c~~--~~~~p~~~l~ 499 (979)
..-...+..|+.|++.++.++.+..+-.|++|++|.+|.| ++. .++.-..++++|++|++++|.. +..+++ +.
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~ 113 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LK 113 (260)
T ss_pred ccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hh
Confidence 3334456677777777777777777777888888888887 433 5555556668888888888642 223333 56
Q ss_pred cCcCCcEEEcccCcc
Q 002024 500 QLDKLEEFYMWNTFK 514 (979)
Q Consensus 500 ~L~~L~~L~l~~~~~ 514 (979)
.+++|..|++++|..
T Consensus 114 ~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSV 128 (260)
T ss_pred hhcchhhhhcccCCc
Confidence 677777777777643
No 274
>CHL00206 ycf2 Ycf2; Provisional
Probab=96.58 E-value=0.018 Score=72.81 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+-|.++||+|+|||.||+++|.+..
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcC
Confidence 356788999999999999999998865
No 275
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.57 E-value=0.014 Score=59.67 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=35.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
..++.|+|++|+|||++|.+++..... ....++|++.. ..+...+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~--~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAK--NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEECC-CCCHHHH
Confidence 478999999999999999999988763 34678899887 5555443
No 276
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.016 Score=57.13 Aligned_cols=94 Identities=18% Similarity=0.184 Sum_probs=60.0
Q ss_pred CCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 9 KGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
...+=|=++.++++.+..+ -+..+-|.++||+|.|||-.|++++++.. .. |+.+-.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd--ac-----firvig---- 244 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD--AC-----FIRVIG---- 244 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC--ce-----EEeehh----
Confidence 4455677888888887754 12456788999999999999999998765 22 333321
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
.++++..-. .....+..+.+.-...+-++++||+++..
T Consensus 245 ----selvqkyvg-----egarmvrelf~martkkaciiffdeidai 282 (435)
T KOG0729|consen 245 ----SELVQKYVG-----EGARMVRELFEMARTKKACIIFFDEIDAI 282 (435)
T ss_pred ----HHHHHHHhh-----hhHHHHHHHHHHhcccceEEEEeeccccc
Confidence 122222111 11233455555555567899999998543
No 277
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.54 E-value=0.004 Score=66.27 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHHHhcC------CCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 11 IFESRKSIVKQLLEALNN------ENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~~------~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
.++|.++.++++++++.. ...++++++||+|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 789999999999988852 23478899999999999999999998764
No 278
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.53 E-value=0.0003 Score=61.92 Aligned_cols=100 Identities=22% Similarity=0.220 Sum_probs=55.6
Q ss_pred ccEEEccCCcccccC----CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeC
Q 002024 365 LTGISLMSNYIHEVP----AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLE 440 (979)
Q Consensus 365 l~~l~l~~~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~ 440 (979)
+..++++++.+-.++ .......|+..+|++|.+.++|+.+-.+++.+..|+|+++....+|..+..++.||.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 334555555444333 2234556666677777777777666555666666666663222566555555555555555
Q ss_pred CCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCC
Q 002024 441 DCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDH 486 (979)
Q Consensus 441 ~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~ 486 (979)
.|+ +...|..|..|.+|-.|+..+
T Consensus 109 ~N~----------------------l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 109 FNP----------------------LNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred cCc----------------------cccchHHHHHHHhHHHhcCCC
Confidence 554 444555555555555555555
No 279
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.015 Score=66.13 Aligned_cols=174 Identities=17% Similarity=0.198 Sum_probs=93.3
Q ss_pred CCCCchhHHHHHHHHHH---HhcCCC---------ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 8 SKGIFESRKSIVKQLLE---ALNNEN---------VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~---~l~~~~---------~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
......|.|+..+++.+ .|.++. ++=|.++||+|.|||.||++++-+..+- | ++.|..
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS--- 217 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGS--- 217 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccch---
Confidence 34556777776666554 454332 3557899999999999999999887642 2 111111
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------------chhhhcCCCCCCC--C
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------------DLQKVGIPLGEDH--E 137 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------------~~~~l~~~~~~~~--~ 137 (979)
++ ++.+- ++. ..++.++...-+++-++++++|.++... .+..+........ .
T Consensus 218 -~F----VemfV----GvG-AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 -DF----VEMFV----GVG-ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred -hh----hhhhc----CCC-cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 00 00110 011 2334444444445678999999886541 1233333332222 2
Q ss_pred CcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch
Q 002024 138 GCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI 203 (979)
Q Consensus 138 ~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 203 (979)
|-.|+..|...++. +.-+-.+.+.++.-+-..-.++++-++....-.++.. ...|++.+-|.--
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd--l~~iAr~tpGfsG 356 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD--LKKIARGTPGFSG 356 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC--HHHHhhhCCCccc
Confidence 33344444444443 2223346777777776777777775554333222211 3338888877644
No 280
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.53 E-value=0.077 Score=55.99 Aligned_cols=166 Identities=11% Similarity=0.027 Sum_probs=91.6
Q ss_pred HHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhh--------hccCCCeEEEEEe-ccCCCHHHHHHHHHHHhCC
Q 002024 19 VKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQ--------ESKRYDTVVMAVV-SHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 19 l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~--------~~~~f~~~~~~~~-~~~~~~~~~~~~i~~~l~~ 88 (979)
++.+...+..+. ..+..++|+.|.||+++|+.+++..- ...+-+.+.+++. ....+..++ +++.+.+..
T Consensus 5 ~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~ 83 (299)
T PRK07132 5 IKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYF 83 (299)
T ss_pred HHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhcc
Confidence 344555555443 45667999999999999999999872 1122223333321 111222222 223333322
Q ss_pred cccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEc-CChhhhh-ccCCcceEEcCC
Q 002024 89 TICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTS-RSQGVCN-QMDAQKIFIVRT 164 (979)
Q Consensus 89 ~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTt-r~~~~~~-~~~~~~~~~l~~ 164 (979)
..- .++++-++|+|+++...+ .+.+...+-.-..++.+|++| ....+.. .....+.+++.+
T Consensus 84 ~~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SSF---------------VQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CCc---------------ccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 110 025778888999876533 334433333334455555544 4444442 233458899999
Q ss_pred CCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 165 LLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 165 L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
++.++..+.+... + . .++.+..++...+|.-.|+..
T Consensus 149 l~~~~l~~~l~~~-~--~----~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSK-N--K----EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHc-C--C----ChhHHHHHHHHcCCHHHHHHH
Confidence 9999999888764 2 1 112355666667763344444
No 281
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.50 E-value=0.018 Score=61.31 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=43.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc----cCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQES----KRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++-|+|++|+|||+++.+++-..... ..-..++|++....+++.++. ++++.++.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d 157 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVD 157 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCC
Confidence 4788899999999999999987654311 123478999998888887765 457777654
No 282
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.49 E-value=0.019 Score=61.58 Aligned_cols=58 Identities=21% Similarity=0.146 Sum_probs=43.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh----ccCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE----SKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++-|+|++|+|||+|+.+++-.... ...-..++|++-...+++.++.+ +++.++.+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 467789999999999999998754431 11224789999999888887654 66777655
No 283
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.48 E-value=0.12 Score=55.28 Aligned_cols=47 Identities=19% Similarity=0.150 Sum_probs=34.1
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCC--CCCccchHHHHHHHHHcCCCchHH
Q 002024 159 IFIVRTLLEEESWILFREAAGTV--VENSDLNSIAREVAAKCSGLPIAI 205 (979)
Q Consensus 159 ~~~l~~L~~~e~~~l~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plal 205 (979)
.+++++++.+|+..++..+.... ......+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 78999999999999998776322 222444556667777779999654
No 284
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.058 Score=52.86 Aligned_cols=132 Identities=13% Similarity=0.207 Sum_probs=77.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM 108 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 108 (979)
+..+-|.++||+|.|||.||+++++... ..| +.+... + .+-+.+|-. ...+..+.+--+.
T Consensus 187 dpprgvllygppg~gktml~kava~~t~--a~f-----irvvgs----e---fvqkylgeg------prmvrdvfrlake 246 (408)
T KOG0727|consen 187 DPPRGVLLYGPPGTGKTMLAKAVANHTT--AAF-----IRVVGS----E---FVQKYLGEG------PRMVRDVFRLAKE 246 (408)
T ss_pred CCCcceEEeCCCCCcHHHHHHHHhhccc--hhe-----eeeccH----H---HHHHHhccC------cHHHHHHHHHHhc
Confidence 3457788999999999999999998876 233 222111 1 122334322 2334445554456
Q ss_pred CCeEEEEEcCCCCcc------------chhhhcCC----CC--CCCCCcEEEEEcCCh-----hhhhccCCcceEEcCCC
Q 002024 109 EKRILVILDDVWERI------------DLQKVGIP----LG--EDHEGCNILLTSRSQ-----GVCNQMDAQKIFIVRTL 165 (979)
Q Consensus 109 ~~~~LlvlDd~~~~~------------~~~~l~~~----~~--~~~~~~~iiiTtr~~-----~~~~~~~~~~~~~l~~L 165 (979)
+.+.++++|+++..+ +...+... .. ++..+.+||..|... .+...-+-.+.++++--
T Consensus 247 napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 247 NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCC
Confidence 888999999986541 11111111 11 234566788766543 22232334578888866
Q ss_pred CHHHHHHHHHHHhCC
Q 002024 166 LEEESWILFREAAGT 180 (979)
Q Consensus 166 ~~~e~~~l~~~~~~~ 180 (979)
+..+-.-.|......
T Consensus 327 drrqkrlvf~titsk 341 (408)
T KOG0727|consen 327 DRRQKRLVFSTITSK 341 (408)
T ss_pred chhhhhhhHHhhhhc
Confidence 677777777776643
No 285
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.45 E-value=0.018 Score=54.10 Aligned_cols=114 Identities=22% Similarity=0.201 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC---CCHHHHHHHHHHHh-----CCc--ccccchHH---H
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN---LSIVKIQGEIAAVL-----GLT--ICGIEESA---R 98 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~i~~~l-----~~~--~~~~~~~~---~ 98 (979)
..|-|++..|.|||++|...+-+.. .+-..|.++.+-.. .+....++.+- .+ +.. ....+... .
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~--~~g~~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRAL--GHGYRVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHH
Confidence 4677888899999999999998876 34445666554333 22333333220 00 100 00001111 1
Q ss_pred H----HHHHHHHhcCCeEEEEEcCCCCc-----cchhhhcCCCCCCCCCcEEEEEcCCh
Q 002024 99 A----GYLWERIKMEKRILVILDDVWER-----IDLQKVGIPLGEDHEGCNILLTSRSQ 148 (979)
Q Consensus 99 ~----~~~~~~l~~~~~~LlvlDd~~~~-----~~~~~l~~~~~~~~~~~~iiiTtr~~ 148 (979)
+ ....+.+..+..=|+|||++-.. .+.+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1 12222333466679999997432 22333333343445677899999985
No 286
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.44 E-value=0.00039 Score=61.22 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=63.7
Q ss_pred CccCCcCCCEEEeCCCCCCCCc-c-ccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCC
Q 002024 427 SLSFLVDLRTLRLEDCYLGDLS-V-IGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL 504 (979)
Q Consensus 427 ~~~~l~~L~~L~L~~~~l~~l~-~-i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L 504 (979)
.+....+|...+|++|.+..++ . -...+.+.+|++++|.+..+|..+..++.|+.|+++.|. +...|.- +..|.+|
T Consensus 48 ~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~v-i~~L~~l 125 (177)
T KOG4579|consen 48 MLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNP-LNAEPRV-IAPLIKL 125 (177)
T ss_pred HHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCc-cccchHH-HHHHHhH
Confidence 3445556666677777666652 2 234557888899999999999999999999999999965 5556654 6779999
Q ss_pred cEEEcccCc
Q 002024 505 EEFYMWNTF 513 (979)
Q Consensus 505 ~~L~l~~~~ 513 (979)
-.|+..++.
T Consensus 126 ~~Lds~~na 134 (177)
T KOG4579|consen 126 DMLDSPENA 134 (177)
T ss_pred HHhcCCCCc
Confidence 888877653
No 287
>PRK14974 cell division protein FtsY; Provisional
Probab=96.41 E-value=0.029 Score=60.07 Aligned_cols=90 Identities=23% Similarity=0.249 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCcccccc---h-HHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLTICGIE---E-SARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~---~-~~~~~~~~~~ 105 (979)
..+|.++|+.|+||||++..++...... .+ .++.++.... ....+-++..++.++.+..... + ...+....+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~ 217 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEH 217 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHH
Confidence 5789999999999999999999877632 23 4545544321 2233445666777776532211 1 1112222222
Q ss_pred HhcCCeEEEEEcCCCCc
Q 002024 106 IKMEKRILVILDDVWER 122 (979)
Q Consensus 106 l~~~~~~LlvlDd~~~~ 122 (979)
......=++++|.+...
T Consensus 218 ~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 218 AKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHhCCCCEEEEECCCcc
Confidence 22222338889987543
No 288
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.40 E-value=0.022 Score=58.02 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=32.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
..++.|+|++|+|||++|.+++.... ..-..++|++....+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~--~~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA--GQGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCCCC
Confidence 47889999999999999999998875 234567888765444
No 289
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.018 Score=68.39 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=68.6
Q ss_pred CCchhHHHHHHHHHHHhcC------C--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 10 GIFESRKSIVKQLLEALNN------E--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~------~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
+.++|.++.+..|.+.+.. + +.-...+.||.|+|||.||++++...- +..+..+-++.+ +..+
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~F--gse~~~IriDms------e~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVF--GSEENFIRLDMS------EFQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHc--CCccceEEechh------hhhh-
Confidence 4678999999999888751 1 345678999999999999999998774 334444444333 3333
Q ss_pred HHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 82 IAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 82 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
+.+-.+.+ ++.-......++.+.++.....+|.||||+..
T Consensus 633 vskligsp-~gyvG~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 633 VSKLIGSP-PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hhhccCCC-cccccchhHHHHHHHHhcCCceEEEEechhhc
Confidence 33333433 32223344557777777677778889999764
No 290
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.36 E-value=0.021 Score=54.93 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=30.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.|+|++|+|||+++..++..... .-..++|++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcch
Confidence 679999999999999999988763 34567788776553
No 291
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.33 E-value=0.03 Score=62.50 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=51.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC-HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS-IVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.+++.|+|++|+||||++..++...........|..++...... ..+-+...++.++.+..............+.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC--
Confidence 36899999999999999999988765112335677777654221 223334445556655443333333333333332
Q ss_pred CeEEEEEcCC
Q 002024 110 KRILVILDDV 119 (979)
Q Consensus 110 ~~~LlvlDd~ 119 (979)
..=++|+|..
T Consensus 299 ~~DlVlIDt~ 308 (424)
T PRK05703 299 DCDVILIDTA 308 (424)
T ss_pred CCCEEEEeCC
Confidence 3567888976
No 292
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.33 E-value=0.067 Score=54.39 Aligned_cols=133 Identities=16% Similarity=0.140 Sum_probs=68.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccC-CCeEE-EE---EeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-YDTVV-MA---VVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWE 104 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-f~~~~-~~---~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 104 (979)
.+-++++||++|+||..+++.+++......- =+.|- ++ ++.++..++.-. .+....+.+
T Consensus 109 KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk----------------~eL~~~v~~ 172 (344)
T KOG2170|consen 109 KPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK----------------EELKNRVRG 172 (344)
T ss_pred CCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH----------------HHHHHHHHH
Confidence 3567899999999999999999997642211 11111 11 111111111111 122344444
Q ss_pred HHhcCCeEEEEEcCCCCcc-----chhhhcCCCCC----CCCCcEEEEEc--CChhhh-------hccCCcceEEcCCCC
Q 002024 105 RIKMEKRILVILDDVWERI-----DLQKVGIPLGE----DHEGCNILLTS--RSQGVC-------NQMDAQKIFIVRTLL 166 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~~~-----~~~~l~~~~~~----~~~~~~iiiTt--r~~~~~-------~~~~~~~~~~l~~L~ 166 (979)
....-++.|+|+|+++... .+..+..+.+. .......|..| +..+++ .....-+.++++.++
T Consensus 173 ~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E 252 (344)
T KOG2170|consen 173 TVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENARNGKPREQLRLKSFE 252 (344)
T ss_pred HHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHHHcCCCcccchhhhhh
Confidence 4555789999999998762 23333333222 12334455555 333332 111122455666666
Q ss_pred HHHHHHHHHHHh
Q 002024 167 EEESWILFREAA 178 (979)
Q Consensus 167 ~~e~~~l~~~~~ 178 (979)
..-....+...+
T Consensus 253 ~~L~~~~~n~~~ 264 (344)
T KOG2170|consen 253 PALMQSAFNEKA 264 (344)
T ss_pred HHHHHhhhcccc
Confidence 555555555553
No 293
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.32 E-value=0.014 Score=60.71 Aligned_cols=134 Identities=22% Similarity=0.293 Sum_probs=75.8
Q ss_pred chhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHH-hhhccCCCeEEEEE----ecc---------CCCHHH
Q 002024 12 FESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQ-VQESKRYDTVVMAV----VSH---------NLSIVK 77 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~-~~~~~~f~~~~~~~----~~~---------~~~~~~ 77 (979)
+-+|..+-.--.++|.++++..|.+.|.+|+|||.||-+++-. .-++..|+.++-.- +.. ...+.-
T Consensus 226 i~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~P 305 (436)
T COG1875 226 IRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGP 305 (436)
T ss_pred cCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccc
Confidence 4456666666677788999999999999999999999877543 33445565544321 111 112223
Q ss_pred HHHHHHHHhCCc-ccccchHHHHHHHHHHHh---------cC---CeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEE
Q 002024 78 IQGEIAAVLGLT-ICGIEESARAGYLWERIK---------ME---KRILVILDDVWER--IDLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 78 ~~~~i~~~l~~~-~~~~~~~~~~~~~~~~l~---------~~---~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~ii 142 (979)
..+.|.+-+..- .........+.++..+-. .| ..-++|+|++++. .++..+.. ..+.|+||+
T Consensus 306 Wmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTilt---R~G~GsKIV 382 (436)
T COG1875 306 WMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILT---RAGEGSKIV 382 (436)
T ss_pred hHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHH---hccCCCEEE
Confidence 333443333210 001011233333322110 12 4578999999875 34555543 457899998
Q ss_pred EEcCCh
Q 002024 143 LTSRSQ 148 (979)
Q Consensus 143 iTtr~~ 148 (979)
.|.-..
T Consensus 383 l~gd~a 388 (436)
T COG1875 383 LTGDPA 388 (436)
T ss_pred EcCCHH
Confidence 876544
No 294
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.31 E-value=0.036 Score=57.05 Aligned_cols=52 Identities=17% Similarity=0.228 Sum_probs=37.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLG 87 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~ 87 (979)
..++.|.|++|+|||++|.+++.... .....++|++... ++.++.+. +++++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~--~~ge~~lyvs~ee--~~~~i~~~-~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGIYVALEE--HPVQVRRN-MAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEEEeeC--CHHHHHHH-HHHhC
Confidence 47899999999999999999987764 2345688887653 55555555 33444
No 295
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.29 E-value=0.025 Score=60.03 Aligned_cols=86 Identities=23% Similarity=0.253 Sum_probs=60.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc--chHHHHHHHHHHHhc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI--EESARAGYLWERIKM 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 108 (979)
..+|.|-|.+|+|||||.-+++.+...+. .+.||+- ..+..+ .+--++.++...++. -.+.....+.+.+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsG--EES~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSG--EESLQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeC--CcCHHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47899999999999999999999987443 6777654 333332 344477777543322 223445677777777
Q ss_pred CCeEEEEEcCCCCc
Q 002024 109 EKRILVILDDVWER 122 (979)
Q Consensus 109 ~~~~LlvlDd~~~~ 122 (979)
.++-++|+|-+++.
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 88999999998654
No 296
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.29 E-value=0.024 Score=57.97 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=26.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQES 58 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~ 58 (979)
+...+|+|.|++|+|||||++.++......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 456899999999999999999999887643
No 297
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.29 E-value=0.002 Score=63.85 Aligned_cols=61 Identities=31% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCCccEEEecCC---cCCCCCcCccCCcCCCEEEeCCCCCCCCc---cccCCcCCcEEEcccCcCc
Q 002024 407 GMKDLKVLDLSYI---LPLSLPPSLSFLVDLRTLRLEDCYLGDLS---VIGELSNLEILSLCRSSIK 467 (979)
Q Consensus 407 ~l~~L~~L~L~~~---~~~~~p~~~~~l~~L~~L~L~~~~l~~l~---~i~~L~~L~~L~Ls~~~l~ 467 (979)
.+++|+.|.++.+ +...++-....+++|++|++++|+++.++ .+..+.||..|++..|...
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 4455555555542 22233333344466666666666554432 2334444555555555443
No 298
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.27 E-value=0.012 Score=57.62 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEE
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMA 67 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~ 67 (979)
..+|.|.|++|+||||+|+.++.... ..+..++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~--~~~~~~~~~ 41 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLK--LKYSNVIYL 41 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--HcCCcEEEE
Confidence 46899999999999999999999886 345555555
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.027 Score=60.22 Aligned_cols=90 Identities=22% Similarity=0.175 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM 108 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 108 (979)
+.+++.|+|+.|+||||++..++.....+ ...+.++++..-. ...+-.+..++.++.+.....+........+.+..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 35889999999999999999999877532 3467777775432 23445556667677654433333344444444432
Q ss_pred -CCeEEEEEcCCCC
Q 002024 109 -EKRILVILDDVWE 121 (979)
Q Consensus 109 -~~~~LlvlDd~~~ 121 (979)
+..=++++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456777888743
No 300
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.24 E-value=0.039 Score=48.90 Aligned_cols=45 Identities=20% Similarity=0.297 Sum_probs=31.7
Q ss_pred CchhHHHHHHH----HHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 11 IFESRKSIVKQ----LLEALNN---ENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 11 ~~vgR~~~l~~----l~~~l~~---~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.++|..-..+. |.+.+.. ...-+++++|++|+|||.+++.+|+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 34555544444 4444442 345678999999999999999999984
No 301
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.24 E-value=0.018 Score=59.54 Aligned_cols=83 Identities=14% Similarity=0.199 Sum_probs=56.8
Q ss_pred CCCCchhHHHHHHH---HHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe--ccCCCHHHHHH
Q 002024 8 SKGIFESRKSIVKQ---LLEALNNE--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV--SHNLSIVKIQG 80 (979)
Q Consensus 8 ~~~~~vgR~~~l~~---l~~~l~~~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~ 80 (979)
..+.|||..+.-++ +.++...+ ..+.|.|.||+|+|||+||-.+++.....-+|..+.--.+ ..-...+.+.+
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~L~q 116 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQ 116 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHHHHH
Confidence 46789998877655 56666644 3588999999999999999999999987777754321111 11123456666
Q ss_pred HHHHHhCCcc
Q 002024 81 EIAAVLGLTI 90 (979)
Q Consensus 81 ~i~~~l~~~~ 90 (979)
.+-+++|...
T Consensus 117 a~RraIGvri 126 (450)
T COG1224 117 ALRRAIGVRI 126 (450)
T ss_pred HHHHhhceEe
Confidence 6666666553
No 302
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.24 E-value=0.007 Score=70.45 Aligned_cols=82 Identities=13% Similarity=0.132 Sum_probs=64.1
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
++|.....++|+++.++.|...+... +.+.|+|++|+|||++|+.+++... ...++.++|..- ...+...+++.++
T Consensus 25 ~~~~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 25 VPERLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred cCcccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHH
Confidence 35667788999999999988877665 4788999999999999999998764 234677788655 4457788888888
Q ss_pred HHhCCc
Q 002024 84 AVLGLT 89 (979)
Q Consensus 84 ~~l~~~ 89 (979)
.++|..
T Consensus 101 ~~~G~~ 106 (637)
T PRK13765 101 AGKGKQ 106 (637)
T ss_pred HhcCHH
Confidence 777643
No 303
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.23 E-value=0.025 Score=59.20 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
....+|+|.|++|+||||+|+.+..-......-..+..++....
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f 103 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF 103 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence 34578999999999999999988766542111123445554443
No 304
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.23 E-value=0.045 Score=58.76 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=58.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc-CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH-NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.++|.++||.|+||||-...+|.++.-...-..|..++... .-...+-++.-++-++.+...........+....+. .
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~-~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR-D 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-c
Confidence 58999999999999984444444443112334566666543 345566667778889988887777777777666665 3
Q ss_pred CeEEEEEcCCC
Q 002024 110 KRILVILDDVW 120 (979)
Q Consensus 110 ~~~LlvlDd~~ 120 (979)
. =++.+|-+.
T Consensus 282 ~-d~ILVDTaG 291 (407)
T COG1419 282 C-DVILVDTAG 291 (407)
T ss_pred C-CEEEEeCCC
Confidence 3 455567664
No 305
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.21 E-value=0.026 Score=61.67 Aligned_cols=86 Identities=26% Similarity=0.257 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc--chHHHHHHHHHHHhc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI--EESARAGYLWERIKM 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 108 (979)
..++.|.|++|+|||||+.+++..... ....++|++... +..++ ..-++.++...+.. ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 478999999999999999999987763 234678887543 33332 33355566433221 011223445555555
Q ss_pred CCeEEEEEcCCCC
Q 002024 109 EKRILVILDDVWE 121 (979)
Q Consensus 109 ~~~~LlvlDd~~~ 121 (979)
.+.-++|+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5677889999744
No 306
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.19 E-value=0.03 Score=57.12 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=36.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
..++.|.|++|+|||++|.+++.....+ -..+++++. ..+..++.+++ ++++.
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g~~~~yi~~--e~~~~~~~~~~-~~~g~ 76 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQN--GYSVSYVST--QLTTTEFIKQM-MSLGY 76 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEEeC--CCCHHHHHHHH-HHhCC
Confidence 3689999999999999998887766422 245666663 33556666665 34443
No 307
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.17 E-value=0.0021 Score=59.88 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 13 ESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 13 vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
||+-..++++.+.+. ......|.|+|..|+||+++|+.++....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 466667777766654 12235677999999999999999987654
No 308
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.15 E-value=0.06 Score=52.82 Aligned_cols=113 Identities=13% Similarity=0.134 Sum_probs=67.0
Q ss_pred CCCchhHHHHHHHHHHHh----cCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEAL----NNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l----~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
...++|-+...+.+.+.. ++....-|.+||-.|+|||.|++++.+.+.. .+-+. |.+.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~--~glrL--VEV~k~------------ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD--EGLRL--VEVDKE------------ 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh--cCCeE--EEEcHH------------
Confidence 445788888777776543 4555567889999999999999999998873 23222 222211
Q ss_pred HhCCcccccchHHHHHHHHHHHh-cCCeEEEEEcCCCCc---cchhhhcCCCCC---CCCCcEEEEEcCC
Q 002024 85 VLGLTICGIEESARAGYLWERIK-MEKRILVILDDVWER---IDLQKVGIPLGE---DHEGCNILLTSRS 147 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~---~~~~~l~~~~~~---~~~~~~iiiTtr~ 147 (979)
+....-.+.+.++ ...|++++.||..=+ ..+..+...+.. +.+...++..|-+
T Consensus 123 ----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 ----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 1111223334343 478999999998422 334444433322 2345555554443
No 309
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.13 E-value=0.024 Score=58.82 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=64.4
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE---eccCCCHHHHHHHHHHHhCC-ccc-------ccchH
Q 002024 28 NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV---VSHNLSIVKIQGEIAAVLGL-TIC-------GIEES 96 (979)
Q Consensus 28 ~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~---~~~~~~~~~~~~~i~~~l~~-~~~-------~~~~~ 96 (979)
..+..-++|.|+.|+||||+++.++...... ...+++. +....... +++..... +.. -.+..
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~d~~~----ei~~~~~~~~q~~~~~r~~v~~~~ 180 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIVDERS----EIAGCVNGVPQHDVGIRTDVLDGC 180 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecchhHH----HHHHHhcccccccccccccccccc
Confidence 3445678999999999999999999776522 2222321 11111122 33322211 100 01112
Q ss_pred HHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 97 ARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 97 ~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
.....+...+....+=++++|++...+.+..+...+. .|..+|+||-+..+
T Consensus 181 ~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 181 PKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV 231 (270)
T ss_pred hHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence 2233344444456788899999977666655544432 47789999987655
No 310
>PTZ00035 Rad51 protein; Provisional
Probab=96.12 E-value=0.045 Score=59.07 Aligned_cols=58 Identities=22% Similarity=0.165 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh----ccCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE----SKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++.|+|++|+|||+++..++-.... ...-..++|++-...+++.+ +.++++.++..
T Consensus 118 G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~~ 179 (337)
T PTZ00035 118 GSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGLD 179 (337)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCCC
Confidence 478899999999999999998765431 11234678999877777766 44556666554
No 311
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.07 E-value=0.032 Score=58.33 Aligned_cols=89 Identities=22% Similarity=0.268 Sum_probs=51.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCcccc----cchHHHHHHHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLTICG----IEESARAGYLWE 104 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~----~~~~~~~~~~~~ 104 (979)
..++|.++|++|+||||.+..++..... ....|.++++.... ...+-+...++..+.+... .+.........+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~ 148 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKK--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQ 148 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHH
Confidence 3578999999999999999999988763 33567777765321 1223334455665544211 111121212222
Q ss_pred HHhcCCeEEEEEcCCC
Q 002024 105 RIKMEKRILVILDDVW 120 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~ 120 (979)
....+..=++|+|-..
T Consensus 149 ~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 149 KAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHCCCCEEEEeCCC
Confidence 2223445577888764
No 312
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.05 E-value=0.008 Score=66.49 Aligned_cols=47 Identities=19% Similarity=0.173 Sum_probs=40.0
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 8 SKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
-...++||++.++.+...+..+ .-|.|.|++|+|||++|+.++....
T Consensus 18 l~~~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred HhhhccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhc
Confidence 3567999999999998887655 3567999999999999999998765
No 313
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.04 E-value=0.029 Score=54.65 Aligned_cols=54 Identities=24% Similarity=0.359 Sum_probs=35.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCC
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGL 88 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~ 88 (979)
++.+.|++|+||||+++.++...... -..++.+++.... ...+.....++..+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~--g~~v~~i~~D~~~~~~~~~l~~~~~~~~~ 56 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK--GKKVLLVAADTYRPAAIEQLRVLGEQVGV 56 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEEcCCCChHHHHHHHHhcccCCe
Confidence 57899999999999999999887633 2345666654322 223334444555554
No 314
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.04 E-value=0.0089 Score=55.78 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV 68 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~ 68 (979)
.+|.|+|.+|+||||||+++.++.... ...+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEec
Confidence 589999999999999999999998743 34566664
No 315
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.044 Score=56.64 Aligned_cols=88 Identities=20% Similarity=0.176 Sum_probs=54.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCC-cccccchHHHHHHHHHHHh--
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGL-TICGIEESARAGYLWERIK-- 107 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~~~~~~~~~~l~-- 107 (979)
.+++=|+|+.|+|||++|.+++-... .....++|++.-+.+++..+.+--...+.. -.........+..+.+.+.
T Consensus 60 g~ItEiyG~~gsGKT~lal~~~~~aq--~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~ 137 (279)
T COG0468 60 GRITEIYGPESSGKTTLALQLVANAQ--KPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARS 137 (279)
T ss_pred ceEEEEecCCCcchhhHHHHHHHHhh--cCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999987776 445589999999998887654443331211 1111111222222222222
Q ss_pred -cCCeEEEEEcCCC
Q 002024 108 -MEKRILVILDDVW 120 (979)
Q Consensus 108 -~~~~~LlvlDd~~ 120 (979)
..+--|+|+|.+.
T Consensus 138 ~~~~i~LvVVDSva 151 (279)
T COG0468 138 GAEKIDLLVVDSVA 151 (279)
T ss_pred ccCCCCEEEEecCc
Confidence 2235688888873
No 316
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.039 Score=57.99 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc-
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM- 108 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 108 (979)
..+-|.+|||+|.|||-.|+.++.+..- .| ..++-.+... -+......+..+.++-..
T Consensus 383 pfRNilfyGPPGTGKTm~ArelAr~SGl--DY---A~mTGGDVAP----------------lG~qaVTkiH~lFDWakkS 441 (630)
T KOG0742|consen 383 PFRNILFYGPPGTGKTMFARELARHSGL--DY---AIMTGGDVAP----------------LGAQAVTKIHKLFDWAKKS 441 (630)
T ss_pred hhhheeeeCCCCCCchHHHHHHHhhcCC--ce---ehhcCCCccc----------------cchHHHHHHHHHHHHHhhc
Confidence 4677899999999999999999987641 11 1111111111 111223345566666654
Q ss_pred CCeEEEEEcCCCCc--------------cchhhhcCCCCCCCCCcEEEEEcCCh-hhhhc--cCCcceEEcCCCCHHHHH
Q 002024 109 EKRILVILDDVWER--------------IDLQKVGIPLGEDHEGCNILLTSRSQ-GVCNQ--MDAQKIFIVRTLLEEESW 171 (979)
Q Consensus 109 ~~~~LlvlDd~~~~--------------~~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~--~~~~~~~~l~~L~~~e~~ 171 (979)
.+..|+++|++|.- ..++.+...-.++...-.+++.|..+ ++-.. -+..++++++---.+|-.
T Consensus 442 ~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERf 521 (630)
T KOG0742|consen 442 RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERF 521 (630)
T ss_pred ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHH
Confidence 55688889998532 12444433333334444444444433 22211 123467787777778888
Q ss_pred HHHHHHh
Q 002024 172 ILFREAA 178 (979)
Q Consensus 172 ~l~~~~~ 178 (979)
+++..+.
T Consensus 522 kll~lYl 528 (630)
T KOG0742|consen 522 KLLNLYL 528 (630)
T ss_pred HHHHHHH
Confidence 7776655
No 317
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.98 E-value=0.028 Score=58.95 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
=+-|..+||+|.|||-||+++|-+-.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 35688999999999999999997765
No 318
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.97 E-value=0.047 Score=60.77 Aligned_cols=86 Identities=21% Similarity=0.248 Sum_probs=52.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCcccccc---h-HHHHHHHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLTICGIE---E-SARAGYLWE 104 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~---~-~~~~~~~~~ 104 (979)
...+|.++|+.|+||||.|..++..+... ...+..+++... ....+.++.+++.++.+..... + ...+....+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~--g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK--GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 35789999999999999999999888743 235556655432 2234556667777766543221 1 122223333
Q ss_pred HHhcCCeEEEEEcCC
Q 002024 105 RIKMEKRILVILDDV 119 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~ 119 (979)
... .. -++|+|..
T Consensus 172 ~~~-~~-DvVIIDTA 184 (437)
T PRK00771 172 KFK-KA-DVIIVDTA 184 (437)
T ss_pred Hhh-cC-CEEEEECC
Confidence 333 22 56778876
No 319
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.97 E-value=0.0034 Score=62.08 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=21.0
Q ss_pred CCCCceEEEccCCCCccc----ChhhhcCCCCccEEEecC
Q 002024 383 ECPKLQVLLLQENSPLVI----PDKFFQGMKDLKVLDLSY 418 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~ 418 (979)
.+..+..++|+||.+..- ....+..-++|++.+++.
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd 67 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD 67 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence 355666667777766632 222344556777777766
No 320
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.97 E-value=0.053 Score=57.31 Aligned_cols=87 Identities=21% Similarity=0.147 Sum_probs=51.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc------cchHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG------IEESARAGYLWE 104 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 104 (979)
.+++-|+|+.|+||||||..++..... ....++|++..+..++. .++.+|.+... ....+....+-+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~--~g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQK--QGGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TT-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhc--ccceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 478999999999999999999987753 34568899998876663 34445543221 122222333333
Q ss_pred HHhcCCeEEEEEcCCCCccc
Q 002024 105 RIKMEKRILVILDDVWERID 124 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~~~~ 124 (979)
-+..+..-++|+|-|.....
T Consensus 126 lirsg~~~lVVvDSv~al~p 145 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAALVP 145 (322)
T ss_dssp HHHTTSESEEEEE-CTT-B-
T ss_pred HhhcccccEEEEecCcccCC
Confidence 33456666899999876543
No 321
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.97 E-value=0.039 Score=56.77 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=37.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLG 87 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~ 87 (979)
..++.|+|++|+|||+++.+++..... .-..++|++... ++.++.+++ ++++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~--~~~~~~~~~-~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTEN--TSKSYLKQM-ESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCC--CHHHHHHHH-HHCC
Confidence 478899999999999999999876542 345788888864 445555553 3344
No 322
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.96 E-value=0.0089 Score=66.99 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=42.8
Q ss_pred CCCCCCchhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 6 SSSKGIFESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+....++|-++.+++|++.+. +...+++.++||.|+|||+||+.+++-..
T Consensus 72 y~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 72 YPAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred ccchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 3345578999999999999882 44558999999999999999999998765
No 323
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.01 Score=54.23 Aligned_cols=31 Identities=39% Similarity=0.546 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDT 63 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~ 63 (979)
-.|+|+|++|+||||++..+++..+.+. |..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 4588999999999999999999988543 543
No 324
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.96 E-value=0.0081 Score=54.91 Aligned_cols=46 Identities=33% Similarity=0.507 Sum_probs=35.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccc
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTIC 91 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 91 (979)
+|.|.|++|+||||+|+.+++... -.+ .+...+.++++++.|.+..
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g--l~~-----------vsaG~iFR~~A~e~gmsl~ 47 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG--LKL-----------VSAGTIFREMARERGMSLE 47 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC--Cce-----------eeccHHHHHHHHHcCCCHH
Confidence 688999999999999999999876 211 1334577888888887643
No 325
>PRK06547 hypothetical protein; Provisional
Probab=95.96 E-value=0.012 Score=56.83 Aligned_cols=36 Identities=25% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 21 QLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 21 ~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+...+......+|+|.|++|+||||+|+.+++...
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344445566778999999999999999999998753
No 326
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.046 Score=60.22 Aligned_cols=87 Identities=21% Similarity=0.308 Sum_probs=52.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc-CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH-NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
..+|+++|+.|+||||++..++.........+.+..+.... .....+-+...++.++.+................+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~-- 268 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELR-- 268 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhc--
Confidence 47899999999999999999987654323334445554433 234445566667777776554444333333334332
Q ss_pred CeEEEEEcCC
Q 002024 110 KRILVILDDV 119 (979)
Q Consensus 110 ~~~LlvlDd~ 119 (979)
..-++++|-.
T Consensus 269 ~~d~VLIDTa 278 (420)
T PRK14721 269 GKHMVLIDTV 278 (420)
T ss_pred CCCEEEecCC
Confidence 3445667765
No 327
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.94 E-value=0.026 Score=51.83 Aligned_cols=116 Identities=16% Similarity=0.275 Sum_probs=42.8
Q ss_pred CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEE
Q 002024 382 LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEIL 459 (979)
Q Consensus 382 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L 459 (979)
.++++|+.+.+.. .+..+....|..+..|+.+.+.+.+...-...|..+..|+.+.+.. .+..+ ..+...++|+.+
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred hCCCCCCEEEECC-CeeEeChhhcccccccccccccccccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 3555666666553 3455555556666666666665543311223455555566666643 22222 234445555555
Q ss_pred EcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcC
Q 002024 460 SLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDK 503 (979)
Q Consensus 460 ~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~ 503 (979)
++..+ +..++. .+.+. +|+.+.+.. .+..++...+.+.++
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTK 127 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG----
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCcccccccc
Confidence 55443 444432 34444 555555543 233344433443333
No 328
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.93 E-value=0.054 Score=63.80 Aligned_cols=88 Identities=20% Similarity=0.343 Sum_probs=56.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.++|+++|+.|+||||.+..++.........+.|..++.... ....+-++...+.++.+.....+...+....+.+. +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-D 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-C
Confidence 479999999999999999999987643233345666665432 23445566667777766544444444444445544 3
Q ss_pred CeEEEEEcCCC
Q 002024 110 KRILVILDDVW 120 (979)
Q Consensus 110 ~~~LlvlDd~~ 120 (979)
. =++++|-..
T Consensus 264 ~-D~VLIDTAG 273 (767)
T PRK14723 264 K-HLVLIDTVG 273 (767)
T ss_pred C-CEEEEeCCC
Confidence 3 377788764
No 329
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.92 E-value=0.016 Score=64.04 Aligned_cols=48 Identities=27% Similarity=0.261 Sum_probs=36.0
Q ss_pred CCCchhHHHHHHHHHHHhc-------CC---------CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 9 KGIFESRKSIVKQLLEALN-------NE---------NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~-------~~---------~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...++|.++.++.+...+. .. ..+-|.++|++|+|||++|+.++....
T Consensus 70 ~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~ 133 (412)
T PRK05342 70 DQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD 133 (412)
T ss_pred hhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC
Confidence 3468999999988754431 10 124588999999999999999997664
No 330
>PRK05439 pantothenate kinase; Provisional
Probab=95.92 E-value=0.078 Score=55.96 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
...-+|+|.|.+|+||||+|+.+............+.-++..+-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF 127 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF 127 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence 34578999999999999999999886653222233444554443
No 331
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.91 E-value=0.029 Score=61.17 Aligned_cols=85 Identities=15% Similarity=0.203 Sum_probs=47.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
..++.|+|++|+||||++..++........ ..+..++...-. .....++..++.++.+.... .....+.+.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G-~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~---~~~~~l~~~l~~~ 298 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMG-KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPV---KDIKKFKETLARD 298 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEecccchhhhHHHHHHHHHHhcCCCeeeh---HHHHHHHHHHHhC
Confidence 367899999999999999999976532222 345555543321 12333344445555543222 1233444444333
Q ss_pred CeEEEEEcCC
Q 002024 110 KRILVILDDV 119 (979)
Q Consensus 110 ~~~LlvlDd~ 119 (979)
..=++|+|-.
T Consensus 299 ~~D~VLIDTa 308 (432)
T PRK12724 299 GSELILIDTA 308 (432)
T ss_pred CCCEEEEeCC
Confidence 4455889943
No 332
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.87 E-value=0.052 Score=58.56 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc----cCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQES----KRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~----~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++-|+|++|+|||+++.+++...... ..-..++|++....++..++. ++++.++.+
T Consensus 95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl~ 156 (310)
T TIGR02236 95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGLD 156 (310)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 4788899999999999999998875421 112379999998888877654 445555543
No 333
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.87 E-value=0.032 Score=52.85 Aligned_cols=25 Identities=40% Similarity=0.461 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+.|.||+|+|||||++.+.++.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999998776
No 334
>PRK10867 signal recognition particle protein; Provisional
Probab=95.87 E-value=0.082 Score=58.74 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=37.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC-HHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS-IVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~i~~~l~~~ 89 (979)
..+|.++|++|+||||.+..++..+..+ ....+..+++..... ..+-++..++..+.+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 5789999999999999999999877633 134455665543222 222333445555543
No 335
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.87 E-value=0.029 Score=54.27 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=60.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh---cc---CC--CeEEEEEeccCCCHHHHHHHHHHHhCCccc-------ccch
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE---SK---RY--DTVVMAVVSHNLSIVKIQGEIAAVLGLTIC-------GIEE 95 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~---~~---~f--~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-------~~~~ 95 (979)
..+++|.|++|+|||||.+.+..+... .. .| ..+.|+. + .+.++.++.... ..+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~--q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFID--Q--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEh--H--------HHHHHHcCCCccccCCCcCcCCH
Confidence 468999999999999999988632110 00 01 0122321 1 345566664321 1111
Q ss_pred -HHHHHHHHHHHhcCC--eEEEEEcCCCCccc---hhhhcCCCCC-CCCCcEEEEEcCChhhhhccCCcceEEc
Q 002024 96 -SARAGYLWERIKMEK--RILVILDDVWERID---LQKVGIPLGE-DHEGCNILLTSRSQGVCNQMDAQKIFIV 162 (979)
Q Consensus 96 -~~~~~~~~~~l~~~~--~~LlvlDd~~~~~~---~~~l~~~~~~-~~~~~~iiiTtr~~~~~~~~~~~~~~~l 162 (979)
......+.+.+. .+ +-++++|+-..--+ ...+...+.. ...|..||++|.+.+.... ..+.+.+
T Consensus 91 Gq~qrl~laral~-~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~--~d~i~~l 161 (176)
T cd03238 91 GELQRVKLASELF-SEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS--ADWIIDF 161 (176)
T ss_pred HHHHHHHHHHHHh-hCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 233344455555 44 66778898643211 1111111111 1146678888887765532 3344444
No 336
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.86 E-value=0.016 Score=62.74 Aligned_cols=62 Identities=13% Similarity=0.106 Sum_probs=43.2
Q ss_pred CCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 9 KGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
.+.++|+...+.++.+.+. .....-|.|+|..|+||+++|+.+..... ..-...+.++|...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~ 68 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAAL 68 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCC
Confidence 4568999999999888775 12224577999999999999999975432 11123456666654
No 337
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.86 E-value=0.039 Score=55.76 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
+|+|.|++|+||||+|+.++........-..+..++...-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 4799999999999999999988753111123445554443
No 338
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.84 E-value=0.042 Score=61.57 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc-CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH-NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.++++++|+.|+||||.+..++.....+.....|..++... .....+-++..++.++.+................+ .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L--~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSEL--R 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhc--c
Confidence 47999999999999999999998775333333566666543 23344555556677666543322222222222223 2
Q ss_pred CeEEEEEcCCC
Q 002024 110 KRILVILDDVW 120 (979)
Q Consensus 110 ~~~LlvlDd~~ 120 (979)
.+-.+++|...
T Consensus 334 d~d~VLIDTaG 344 (484)
T PRK06995 334 NKHIVLIDTIG 344 (484)
T ss_pred CCCeEEeCCCC
Confidence 33467778764
No 339
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.83 E-value=0.057 Score=58.10 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=43.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh---c-cCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE---S-KRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~---~-~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++-|+|++|+|||+++..++..... . ..-..++|++....++++++ .++++.++.+
T Consensus 123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 477889999999999999988865331 1 11236999999998888776 4567777654
No 340
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.81 E-value=0.039 Score=53.22 Aligned_cols=115 Identities=12% Similarity=0.105 Sum_probs=57.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccC---C---CeEEEEEeccCCCHHHHHHHHHHHhCCcccccc-hHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKR---Y---DTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIE-ESARAGYLW 103 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~---f---~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~~ 103 (979)
..+++|.|+.|.|||||++.++-....... + ..+.++.-........+.+.+... .....+ .......+.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 468999999999999999999876432111 1 123333222111112333333211 112222 234445566
Q ss_pred HHHhcCCeEEEEEcCCCCccc---hhhhcCCCCCCCCCcEEEEEcCChhhh
Q 002024 104 ERIKMEKRILVILDDVWERID---LQKVGIPLGEDHEGCNILLTSRSQGVC 151 (979)
Q Consensus 104 ~~l~~~~~~LlvlDd~~~~~~---~~~l~~~~~~~~~~~~iiiTtr~~~~~ 151 (979)
+.+. .++-++++|+-...-+ ...+...+... +..||++|.+....
T Consensus 104 ral~-~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 104 RLLL-HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHH-cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 6666 5667778998543211 11111111111 35677777776554
No 341
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.81 E-value=0.025 Score=55.94 Aligned_cols=44 Identities=23% Similarity=0.148 Sum_probs=31.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
+.|.|++|+|||+++.+++.... ..-..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCC--CHHHHHHH
Confidence 57899999999999999988765 2335577887643 44444433
No 342
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.80 E-value=0.043 Score=58.73 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=41.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh---cc-CCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE---SK-RYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~---~~-~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++.|+|++|+|||+++..++..... .. .-..++|++....++... +.++++.++..
T Consensus 96 g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~~ 157 (316)
T TIGR02239 96 GSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGLN 157 (316)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCCC
Confidence 578899999999999999998864321 11 123689999888777765 44566666554
No 343
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.78 E-value=0.0049 Score=61.04 Aligned_cols=39 Identities=21% Similarity=0.135 Sum_probs=22.0
Q ss_pred HhcccceeecccccCccccccccc--cCCcccccEEEEecc
Q 002024 603 LLKRSEFLFLHEFIGVQDIDGDLI--SGGFTELKCLTLQSC 641 (979)
Q Consensus 603 ~~~~L~~L~L~~~~~~~~~~~~~~--~~~l~~L~~L~L~~~ 641 (979)
.+++|+.|+|+++.........+. ...++.|+.|.+..|
T Consensus 212 y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 212 YSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 357888888877653322111110 023566788888777
No 344
>PRK04328 hypothetical protein; Provisional
Probab=95.77 E-value=0.06 Score=55.76 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
..++.|.|++|+|||+||.+++.... .....++|++... ++.++ ...+++++.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~--~~ge~~lyis~ee--~~~~i-~~~~~~~g~ 75 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGL--QMGEPGVYVALEE--HPVQV-RRNMRQFGW 75 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEEeeC--CHHHH-HHHHHHcCC
Confidence 47889999999999999999988754 2345678887655 34443 334555554
No 345
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.74 E-value=0.027 Score=55.50 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|.|+|++|+||||+|+.+++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999988764
No 346
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.73 E-value=0.014 Score=58.43 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=35.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
....+|+|+|++|+|||||+..+...+..+.+--.|+-|+-+.+++.-.++..
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD 79 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD 79 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc
Confidence 35689999999999999999999999886554456777777777776655544
No 347
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.73 E-value=0.037 Score=54.14 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+++|.|+.|+|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCC
Confidence 36899999999999999999987543
No 348
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.73 E-value=0.061 Score=58.10 Aligned_cols=57 Identities=25% Similarity=0.309 Sum_probs=42.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK----RYDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
..++-|+|++|+|||+++.+++....... .-..++|++....+++.++.+ +++.++.
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 47888999999999999999987754211 124799999988888776654 4455554
No 349
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.13 Score=51.84 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=85.3
Q ss_pred CCCCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+=|-+..+++|.+...- ...+-|.++|.+|.|||-||+++++... ..|=++
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTS--ATFlRv---------- 250 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTS--ATFLRV---------- 250 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccc--hhhhhh----------
Confidence 344556778888888877541 1245566999999999999999998775 223111
Q ss_pred HHHHHHHHHH-HhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCC--C
Q 002024 75 IVKIQGEIAA-VLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGE--D 135 (979)
Q Consensus 75 ~~~~~~~i~~-~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~--~ 135 (979)
+-.++++ .+| +....+.++.+.-....+.++++|+++... + +-.+...+.. .
T Consensus 251 ---vGseLiQkylG------dGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726|consen 251 ---VGSELIQKYLG------DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred ---hhHHHHHHHhc------cchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc
Confidence 1122222 232 223555666665556778889999886431 0 1111111211 1
Q ss_pred CCCcEEEEEcCChhh-----hhccCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 136 HEGCNILLTSRSQGV-----CNQMDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 136 ~~~~~iiiTtr~~~~-----~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
....+||.+|..-+- ...-+..+.++++.-+..--.++|.-+..
T Consensus 322 rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs 370 (440)
T KOG0726|consen 322 RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS 370 (440)
T ss_pred cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec
Confidence 234467766654322 22223456777766666666667765553
No 350
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.72 E-value=0.011 Score=56.90 Aligned_cols=43 Identities=28% Similarity=0.251 Sum_probs=30.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
...+.+.||+|+|||.+|+.+++.... ......+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcccc
Confidence 357889999999999999999988763 2234455566554433
No 351
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.71 E-value=0.048 Score=61.46 Aligned_cols=85 Identities=25% Similarity=0.271 Sum_probs=50.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc--chHHHHHHHHHHHhc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI--EESARAGYLWERIKM 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 108 (979)
..++.|.|++|+|||||+.+++..... .-..++|++... +..++. .-++.++.+.+.. ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~Ee--s~~qi~-~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGEE--SASQIK-LRAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccc--cHHHHH-HHHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 468899999999999999999987762 234678887543 333332 2255565432110 001123344444444
Q ss_pred CCeEEEEEcCCC
Q 002024 109 EKRILVILDDVW 120 (979)
Q Consensus 109 ~~~~LlvlDd~~ 120 (979)
.+.-++|+|.+.
T Consensus 155 ~~~~lVVIDSIq 166 (446)
T PRK11823 155 EKPDLVVIDSIQ 166 (446)
T ss_pred hCCCEEEEechh
Confidence 455567777763
No 352
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.70 E-value=0.025 Score=52.77 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=32.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
|.++|++|+|||+||+.+++... ..+.-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-----~~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-----RPVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-----CEEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-----cceEEEEeccccccccceee
Confidence 56899999999999999998883 23455677777777666543
No 353
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.67 E-value=0.12 Score=53.71 Aligned_cols=94 Identities=14% Similarity=0.166 Sum_probs=53.1
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc-------c
Q 002024 22 LLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI-------E 94 (979)
Q Consensus 22 l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-------~ 94 (979)
.++.+...+..+|.|.|..|+|||||+..+....... . .++.+. ....+..+ .+.++..+.+.-.. .
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI~-gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVIE-GDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEEC-CCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 4445556778999999999999999999999887532 2 222222 11122221 12234444332111 1
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEcCCCC
Q 002024 95 ESARAGYLWERIKMEKRILVILDDVWE 121 (979)
Q Consensus 95 ~~~~~~~~~~~l~~~~~~LlvlDd~~~ 121 (979)
+...+...+..+.....-++|++++..
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 123334445555544456778899865
No 354
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.66 E-value=0.042 Score=56.60 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=53.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CeEEEEEeccC-CCHHHHHHHHHHHhCCc-------ccccchH-----
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRY-DTVVMAVVSHN-LSIVKIQGEIAAVLGLT-------ICGIEES----- 96 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f-~~~~~~~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~----- 96 (979)
.+.++|.|.+|+|||+|+..+++..+. +| +.++++.+... ..+.++.+++...=..+ ..+....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~--~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAK--AHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHh--cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 478899999999999999999998874 34 34555555443 33455555554321111 1111111
Q ss_pred -HHHHHHHHHHh-c-CCeEEEEEcCCCCc
Q 002024 97 -ARAGYLWERIK-M-EKRILVILDDVWER 122 (979)
Q Consensus 97 -~~~~~~~~~l~-~-~~~~LlvlDd~~~~ 122 (979)
..+..+.+.+. + ++.+|+++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11233344443 3 89999999998554
No 355
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.054 Score=50.56 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=26.7
Q ss_pred cCCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 27 NNENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 27 ~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
......+|.++|.+|+||||+|.++.+....
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~ 49 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFA 49 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3445579999999999999999999998874
No 356
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.65 E-value=0.041 Score=53.71 Aligned_cols=26 Identities=27% Similarity=0.575 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|++|+||||+|+.++....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999876
No 357
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.65 E-value=0.031 Score=65.32 Aligned_cols=63 Identities=17% Similarity=0.174 Sum_probs=44.9
Q ss_pred CCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 8 SKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
....++|+...+.++.+.+. ......|.|+|+.|+|||++|+.+++.... .-...+.++|...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~ 258 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAAL 258 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCC
Confidence 45688999999999888775 122345679999999999999999876431 1123456666544
No 358
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.65 E-value=0.046 Score=55.27 Aligned_cols=118 Identities=18% Similarity=0.176 Sum_probs=65.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc-----CCCHHHHHHHHHHHhCCcc-------cccchHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH-----NLSIVKIQGEIAAVLGLTI-------CGIEESAR 98 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~-----~~~~~~~~~~i~~~l~~~~-------~~~~~~~~ 98 (979)
...++|+|.+|.||||+++.+..-.. .....+ ++.-.+ .....+-+.++++.++.+. .+.+.-+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~--pt~G~i-~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE--PTSGEI-LFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC--CCCceE-EEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 47899999999999999999987654 222223 332111 2223345566666666442 12222223
Q ss_pred H-HHHHHHHhcCCeEEEEEcCCCCccc------hhhhcCCCCCCCCCcEEEEEcCChhhhhc
Q 002024 99 A-GYLWERIKMEKRILVILDDVWERID------LQKVGIPLGEDHEGCNILLTSRSQGVCNQ 153 (979)
Q Consensus 99 ~-~~~~~~l~~~~~~LlvlDd~~~~~~------~~~l~~~~~~~~~~~~iiiTtr~~~~~~~ 153 (979)
. ..+.+.+ .-++-++|.|+.-..-+ .-.+...+ ....|...+..|-+-.+...
T Consensus 116 QRi~IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~ 175 (268)
T COG4608 116 QRIGIARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRY 175 (268)
T ss_pred hhHHHHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhh
Confidence 3 3344444 47888999998644322 11121111 12346667777777655543
No 359
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.64 E-value=0.11 Score=57.78 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC-HHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS-IVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~i~~~l~~~ 89 (979)
..++.++|+.|+||||.|..++.....+. ...+..+++..... ..+-++..+...+.+
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp 157 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVACDLYRPAAIEQLKVLGQQVGVP 157 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEeccccchHHHHHHHHHHHhcCCc
Confidence 56899999999999999999998864222 23555666553222 233344445555544
No 360
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.00089 Score=66.30 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=55.5
Q ss_pred cCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccch--hhccCccccEEecCCCCCccccCcc----hhccCc
Q 002024 429 SFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPE--TFCRLSHLWLLDLDHCRQLALIPHG----VISQLD 502 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~--~i~~L~~L~~L~l~~c~~~~~~p~~----~l~~L~ 502 (979)
.+|+-|++|.|+-|+|+.+..+.++++|++|.|..|.|.++.+ .+.+|++|++|-+..|.....-+.+ ++-.|+
T Consensus 38 ~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 4566777777777777777778888888888888887776643 5677888888888776655444432 345556
Q ss_pred CCcEEE
Q 002024 503 KLEEFY 508 (979)
Q Consensus 503 ~L~~L~ 508 (979)
+|+.|+
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 665554
No 361
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.58 E-value=0.039 Score=53.60 Aligned_cols=123 Identities=18% Similarity=0.242 Sum_probs=68.5
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhc-cCC--CeEEEEEeccCCC---HHHHHHHHHHHhCCcccccch
Q 002024 22 LLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQES-KRY--DTVVMAVVSHNLS---IVKIQGEIAAVLGLTICGIEE 95 (979)
Q Consensus 22 l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~-~~f--~~~~~~~~~~~~~---~~~~~~~i~~~l~~~~~~~~~ 95 (979)
++..+...+..-..|.|++|+||||+.|.+++-.... ..| ..+.-++-+..-. ...-+..+..... -.+.
T Consensus 128 li~~ly~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~d----Vld~ 203 (308)
T COG3854 128 LIKDLYQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMD----VLDP 203 (308)
T ss_pred HHHHHHhcCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhh----hccc
Confidence 4444444544446799999999999999999977643 223 3344443222100 0000111111111 1111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhh
Q 002024 96 SARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVC 151 (979)
Q Consensus 96 ~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~ 151 (979)
.-...-+...+....+=++|+|++...++..++...+ ..|-+++.|.....+.
T Consensus 204 cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~~ie 256 (308)
T COG3854 204 CPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGNGIE 256 (308)
T ss_pred chHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccccHH
Confidence 1223334444555778899999999887766554433 4688888887765443
No 362
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.55 E-value=0.011 Score=54.20 Aligned_cols=22 Identities=50% Similarity=0.927 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~ 55 (979)
|+|.|++|+||||+|+.+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 363
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.029 Score=54.32 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|.|.|++|+||||+|+.++++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999999999999999999854
No 364
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.50 E-value=0.035 Score=67.03 Aligned_cols=63 Identities=17% Similarity=0.217 Sum_probs=44.9
Q ss_pred CCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 8 SKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
....++|+...+.++.+.+. ......|.|+|+.|+|||.+|+.+.+... ......+.++|...
T Consensus 374 ~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~ 438 (686)
T PRK15429 374 EFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAM 438 (686)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccC
Confidence 45578999999998876654 12224677999999999999999987653 12234566676654
No 365
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.49 E-value=0.012 Score=61.39 Aligned_cols=87 Identities=22% Similarity=0.284 Sum_probs=46.5
Q ss_pred HHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHH
Q 002024 22 LLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGY 101 (979)
Q Consensus 22 l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 101 (979)
+.+.+...+ +-+.++|++|+|||++++.+.+.... ..| .+.-+.++...+...+++.+-..+.......-..
T Consensus 25 ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~-~~~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP----- 96 (272)
T PF12775_consen 25 LLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDS-DKY-LVITINFSAQTTSNQLQKIIESKLEKRRGRVYGP----- 96 (272)
T ss_dssp HHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTT-CCE-EEEEEES-TTHHHHHHHHCCCTTECECTTEEEEE-----
T ss_pred HHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCc-ccc-ceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCC-----
Confidence 444443443 56679999999999999998866432 111 2344555554444444332222221110000000
Q ss_pred HHHHHhcCCeEEEEEcCCCC
Q 002024 102 LWERIKMEKRILVILDDVWE 121 (979)
Q Consensus 102 ~~~~l~~~~~~LlvlDd~~~ 121 (979)
..+++.++++||+.-
T Consensus 97 -----~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 97 -----PGGKKLVLFIDDLNM 111 (272)
T ss_dssp -----ESSSEEEEEEETTT-
T ss_pred -----CCCcEEEEEecccCC
Confidence 147889999999843
No 366
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.49 E-value=0.06 Score=60.74 Aligned_cols=86 Identities=22% Similarity=0.235 Sum_probs=49.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc--chHHHHHHHHHHHhc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI--EESARAGYLWERIKM 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 108 (979)
..++.|.|++|+|||||+.+++...... -..++|++... +..++. .-++.++...+.. -.......+.+.+.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EE--s~~qi~-~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEE--SLQQIK-MRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcC--CHHHHH-HHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 4788999999999999999998877532 23577887543 333322 2234454332110 001122344444444
Q ss_pred CCeEEEEEcCCCC
Q 002024 109 EKRILVILDDVWE 121 (979)
Q Consensus 109 ~~~~LlvlDd~~~ 121 (979)
.+.-++|+|.+..
T Consensus 169 ~~~~~vVIDSIq~ 181 (454)
T TIGR00416 169 ENPQACVIDSIQT 181 (454)
T ss_pred cCCcEEEEecchh
Confidence 4555677777643
No 367
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.49 E-value=0.0065 Score=35.65 Aligned_cols=22 Identities=41% Similarity=0.726 Sum_probs=15.1
Q ss_pred CCcEEEcccCcCcccchhhccC
Q 002024 455 NLEILSLCRSSIKEIPETFCRL 476 (979)
Q Consensus 455 ~L~~L~Ls~~~l~~lp~~i~~L 476 (979)
+|++|+|++|.++.+|..|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4677777777777777766553
No 368
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.034 Score=53.04 Aligned_cols=26 Identities=46% Similarity=0.703 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+.|.++|.+|+||||+|++++...+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~ 27 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQ 27 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHH
Confidence 46789999999999999999998874
No 369
>PF13245 AAA_19: Part of AAA domain
Probab=95.47 E-value=0.037 Score=44.84 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh-c-cCCCeEEEEEe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQE-S-KRYDTVVMAVV 69 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~-~-~~f~~~~~~~~ 69 (979)
+++.|.|++|+|||+++.+.+..... . ..-+.+..++.
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 57778999999999655555444331 1 22345555533
No 370
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.45 E-value=0.025 Score=56.25 Aligned_cols=109 Identities=8% Similarity=0.136 Sum_probs=53.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDT-VVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
..|.|.|+.|+||||+++.++..... .... ++.+.......... ...+..+-. . +.....-...+...+. ..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~--~~~~~i~t~e~~~E~~~~~-~~~~i~q~~--v-g~~~~~~~~~i~~aLr-~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK--NKTHHILTIEDPIEFVHES-KRSLINQRE--V-GLDTLSFENALKAALR-QD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh--cCCcEEEEEcCCccccccC-ccceeeecc--c-CCCccCHHHHHHHHhc-CC
Confidence 47889999999999999998877652 2222 22222111110000 001111100 0 0011112233444444 34
Q ss_pred eEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 111 RILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 111 ~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
+=++++|++.+.+.+...... ...|..++.|+-....
T Consensus 75 pd~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcH
Confidence 558889999776554433221 2245567777765543
No 371
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.45 E-value=0.027 Score=57.26 Aligned_cols=54 Identities=30% Similarity=0.450 Sum_probs=43.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHH
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i 82 (979)
+...+|+|+|.+|+|||||...+...+..+.+--.|+-|+-+.+++.-.++..-
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 445799999999999999999999999866666677788888888776665554
No 372
>PRK07667 uridine kinase; Provisional
Probab=95.45 E-value=0.037 Score=54.85 Aligned_cols=29 Identities=28% Similarity=0.556 Sum_probs=25.1
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+...+|+|.|++|+||||+|+.+++....
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34478999999999999999999998763
No 373
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.44 E-value=0.013 Score=46.62 Aligned_cols=23 Identities=39% Similarity=0.731 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
+|+|.|++|+||||+++.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 374
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.42 E-value=0.015 Score=57.90 Aligned_cols=25 Identities=44% Similarity=0.781 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+|+|.|++|+||||+|+.++.....
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6899999999999999999998874
No 375
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.41 E-value=0.077 Score=58.52 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
..+|.++|+.|+||||.+..++..++.+ ...|..+++.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~--G~kV~lV~~D 137 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK--GFKPCLVCAD 137 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCCEEEEcCc
Confidence 5789999999999999999999877632 2356666554
No 376
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.41 E-value=0.08 Score=55.17 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=31.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
..++.|.|++|+|||++|.+++..... .-..++|++...
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~--~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS--RGNPVLFVTVES 74 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh--CCCcEEEEEecC
Confidence 478899999999999999999887642 245688888764
No 377
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.40 E-value=0.1 Score=49.11 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|.|.|.+|+||||+|+.++....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998875
No 378
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.40 E-value=0.1 Score=59.96 Aligned_cols=64 Identities=20% Similarity=0.206 Sum_probs=42.1
Q ss_pred HHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 21 QLLEALNNE--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 21 ~l~~~l~~~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
.+-++|.++ ...++.|.|++|+|||+|+.+++..... ....+++++.. .+..++... ++.++.+
T Consensus 251 ~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--~ge~~~y~s~e--Es~~~i~~~-~~~lg~~ 316 (484)
T TIGR02655 251 RLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--NKERAILFAYE--ESRAQLLRN-AYSWGID 316 (484)
T ss_pred hHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEEee--CCHHHHHHH-HHHcCCC
Confidence 344444332 3478899999999999999999998763 34567776543 445555554 3555543
No 379
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.39 E-value=0.039 Score=54.23 Aligned_cols=28 Identities=46% Similarity=0.718 Sum_probs=25.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
.+.+|+|.|.+|+||||+|+.+++.+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 3578999999999999999999998873
No 380
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=95.39 E-value=0.17 Score=54.13 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
...+|.++|++|+||||++..++...... -..|..++..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCeEEEEecC
Confidence 35799999999999999999999988632 3356556543
No 381
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=95.39 E-value=0.094 Score=54.11 Aligned_cols=141 Identities=19% Similarity=0.155 Sum_probs=72.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccC----------CCeEEEEEeccCC-CHHHHHHHHHHHhCCcc-----------
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKR----------YDTVVMAVVSHNL-SIVKIQGEIAAVLGLTI----------- 90 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~----------f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~----------- 90 (979)
+..|+|++|+|||+||..++........ -..|++++..... .+.+-+..+...++...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~~~~~~~~rl~~~~g~ 82 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHLEPDDAGDRLFIDSGR 82 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCCcCcccceEEeccC
Confidence 5578999999999999999886543211 1246666655443 23333344444332110
Q ss_pred -c-----c---cchHHHHHHHHHHHhcCCeEEEEEcCCCC--------ccchhhhcCCCCC--CCCCcEEEEEcCChhhh
Q 002024 91 -C-----G---IEESARAGYLWERIKMEKRILVILDDVWE--------RIDLQKVGIPLGE--DHEGCNILLTSRSQGVC 151 (979)
Q Consensus 91 -~-----~---~~~~~~~~~~~~~l~~~~~~LlvlDd~~~--------~~~~~~l~~~~~~--~~~~~~iiiTtr~~~~~ 151 (979)
. . ......+..+.+.+...+.-++|+|-+.. ......+...+.. ...|..|++++....-.
T Consensus 83 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviDpl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K~~ 162 (239)
T cd01125 83 IQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDPLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRKGS 162 (239)
T ss_pred CCceecccCCcccccHHHHHHHHHHHhcCCCEEEECChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCccc
Confidence 0 0 00122344455545445677999997531 1112222221111 23466677766543211
Q ss_pred h-------cc--------CCcceEEcCCCCHHHHHHH
Q 002024 152 N-------QM--------DAQKIFIVRTLLEEESWIL 173 (979)
Q Consensus 152 ~-------~~--------~~~~~~~l~~L~~~e~~~l 173 (979)
. .. .....+.+.+++.+|+.++
T Consensus 163 ~~~~~~~~~~rGssal~~~~r~~~~l~~~~~~~~~~~ 199 (239)
T cd01125 163 AKDGDTQEAARGASALVDGARWVRALTRMTSEEAEKM 199 (239)
T ss_pred ccCcccccccCcHHHHhcccceEEEEeeCCHHHHHhc
Confidence 0 00 1124677778888887763
No 382
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.39 E-value=0.2 Score=46.28 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..++.|.||+|.|||||.+.++.-..
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhccC
Confidence 46899999999999999999987543
No 383
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.38 E-value=0.012 Score=51.79 Aligned_cols=24 Identities=46% Similarity=0.700 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
|.|+|++|+|||++|+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999888763
No 384
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.36 E-value=0.28 Score=53.50 Aligned_cols=72 Identities=19% Similarity=0.207 Sum_probs=44.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
.++-+.+.||.|.|||.|++.+|-+.... +++++.. .+....-+ .. ++.+..+..--...
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSas--------sLtsK~~G----e~-eK~vralf~vAr~~ 244 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISAS--------SLTSKYVG----ES-EKLVRALFKVARSL 244 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcce-------EeeccHH--------HhhhhccC----hH-HHHHHHHHHHHHhc
Confidence 35667799999999999999999877632 2222211 12111111 11 34444444444457
Q ss_pred CeEEEEEcCCCC
Q 002024 110 KRILVILDDVWE 121 (979)
Q Consensus 110 ~~~LlvlDd~~~ 121 (979)
.+.++++|+++.
T Consensus 245 qPsvifidEids 256 (428)
T KOG0740|consen 245 QPSVIFIDEIDS 256 (428)
T ss_pred CCeEEEechhHH
Confidence 889999999864
No 385
>PRK08233 hypothetical protein; Provisional
Probab=95.36 E-value=0.058 Score=53.07 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|++|+||||+|+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998764
No 386
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.34 E-value=0.088 Score=58.03 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHhc-------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 14 SRKSIVKQLLEALN-------NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 14 gR~~~l~~l~~~l~-------~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
=.++.+.++..||. .-+.++..|+||+|+||||.++.++....
T Consensus 86 VHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 86 VHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred hhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 34556677777776 23457999999999999999999988765
No 387
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.34 E-value=0.051 Score=60.81 Aligned_cols=128 Identities=17% Similarity=0.241 Sum_probs=71.8
Q ss_pred CchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcc
Q 002024 11 IFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTI 90 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ 90 (979)
.|--|++.+..|.+ + ++|.|+|..|+||||=..++.+... ..-++.+-.+..+......+.+.++++++.+.
T Consensus 357 vf~~R~~ll~~ir~----n--~vvvivgETGSGKTTQl~QyL~edG--Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 357 VFACRDQLLSVIRE----N--QVVVIVGETGSGKTTQLAQYLYEDG--YADNGMIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hHHHHHHHHHHHhh----C--cEEEEEecCCCCchhhhHHHHHhcc--cccCCeeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 34445555544443 3 6899999999999994444443332 33345555565555666778888888885441
Q ss_pred ----------cccchHH-----------HHHHHHHHHhcCCeEEEEEcCCCCccchhhh----cCCCCCCCCCcEEEEEc
Q 002024 91 ----------CGIEESA-----------RAGYLWERIKMEKRILVILDDVWERIDLQKV----GIPLGEDHEGCNILLTS 145 (979)
Q Consensus 91 ----------~~~~~~~-----------~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l----~~~~~~~~~~~~iiiTt 145 (979)
++.+... ....+.+... .+.-.+|+|++++..--..+ ...........++|||+
T Consensus 429 G~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L-~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDL-DKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred ccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhh-hheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 2222111 1122222222 46678999999875321111 11111234577899988
Q ss_pred CC
Q 002024 146 RS 147 (979)
Q Consensus 146 r~ 147 (979)
-.
T Consensus 508 AT 509 (1042)
T KOG0924|consen 508 AT 509 (1042)
T ss_pred cc
Confidence 64
No 388
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.32 E-value=0.042 Score=59.68 Aligned_cols=48 Identities=27% Similarity=0.329 Sum_probs=38.5
Q ss_pred CCCchhHHHHHHHHHHHhcCC--------------CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 9 KGIFESRKSIVKQLLEALNNE--------------NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~--------------~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...++|+++....+.-.+... ..+-|.++|++|+|||++|+.++....
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999886555421 135788999999999999999999875
No 389
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.27 E-value=0.06 Score=59.31 Aligned_cols=48 Identities=27% Similarity=0.247 Sum_probs=36.6
Q ss_pred CCCchhHHHHHHHHHHHhc-------C-------C----CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 9 KGIFESRKSIVKQLLEALN-------N-------E----NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~-------~-------~----~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...++|.++.++.+...+. . + ....|.++|++|+|||++|+.++....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~ 141 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN 141 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC
Confidence 4567999999998865541 1 1 024688999999999999999997664
No 390
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.26 E-value=0.031 Score=50.73 Aligned_cols=27 Identities=33% Similarity=0.298 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..+|.+.|+-|+||||+++.+++....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 368999999999999999999998653
No 391
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.25 E-value=0.082 Score=62.58 Aligned_cols=84 Identities=21% Similarity=0.135 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc------cchHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG------IEESARAGYLWE 104 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 104 (979)
.+++-|+|++|+|||+|+.+++.... ..-..++|++....++. ..++.+|.+... ...+.....+..
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~--~~G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~~ 132 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQ--AAGGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIADM 132 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHHH
Confidence 47888999999999999999877654 23456889988776663 367777765321 122222333333
Q ss_pred HHhcCCeEEEEEcCCCC
Q 002024 105 RIKMEKRILVILDDVWE 121 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~ 121 (979)
.+.++..-++|+|.+..
T Consensus 133 lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 133 LIRSGALDIVVIDSVAA 149 (790)
T ss_pred HhhcCCCeEEEEcchhh
Confidence 34456778999999753
No 392
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.24 E-value=0.14 Score=53.76 Aligned_cols=26 Identities=46% Similarity=0.477 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+-|.++||+|.|||-+|++++.+..
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcC
Confidence 46688999999999999999999886
No 393
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.24 E-value=0.035 Score=59.96 Aligned_cols=58 Identities=14% Similarity=0.138 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 12 FESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
++|+...+.++.+.+. .....-|.|+|..|+||+++|+.+.+.... .-...+.++|..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~ 60 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAA 60 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCC
Confidence 4677777777776664 122245779999999999999999765431 112234566654
No 394
>COG4240 Predicted kinase [General function prediction only]
Probab=95.23 E-value=0.13 Score=49.86 Aligned_cols=83 Identities=13% Similarity=0.115 Sum_probs=56.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCC-----cccccchHHHHHHHH
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGL-----TICGIEESARAGYLW 103 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~~ 103 (979)
+..-+++|.|+-|+||||++..++.....++. .++...+..+-.-..+-...+++++.. -.++.-+......+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 34578899999999999999999998875543 478888777665555556666666422 123333445566677
Q ss_pred HHHhcCCeE
Q 002024 104 ERIKMEKRI 112 (979)
Q Consensus 104 ~~l~~~~~~ 112 (979)
+.+.+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 777655533
No 395
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=95.21 E-value=0.031 Score=59.01 Aligned_cols=53 Identities=21% Similarity=0.323 Sum_probs=39.0
Q ss_pred CCCchhHHHHHHH---HHHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHHHhhhccCC
Q 002024 9 KGIFESRKSIVKQ---LLEALNNEN--VSVIGLCGMGGVGKTTLAKEIGKQVQESKRY 61 (979)
Q Consensus 9 ~~~~vgR~~~l~~---l~~~l~~~~--~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f 61 (979)
...+||+.+.-++ +.+++.... .+.|.+.|++|+|||+||..+++.....-+|
T Consensus 23 ~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF 80 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPF 80 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-E
T ss_pred cccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCe
Confidence 5789999887765 456665443 5899999999999999999999999865555
No 396
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.19 E-value=0.078 Score=52.70 Aligned_cols=41 Identities=22% Similarity=0.385 Sum_probs=29.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCC--------CeEEEEEeccC
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRY--------DTVVMAVVSHN 72 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f--------~~~~~~~~~~~ 72 (979)
.++.|.|++|+|||+++.+++........| ..|+|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 578899999999999999999887643322 35778876555
No 397
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.067 Score=54.11 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
.+++|+||.|.|||||++.+.--
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 79999999999999999999773
No 398
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.17 E-value=0.026 Score=56.74 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
.+++.|+|+.|.||||+.+.++..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 388999999999999999999753
No 399
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.16 E-value=0.039 Score=60.79 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 16 KSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 16 ~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
.+.++.+.+.+.......++|.|+||+|||++.+++.+..+.
T Consensus 7 ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 7 RRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 344455555555555678899999999999999999988864
No 400
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.14 E-value=0.055 Score=52.64 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+++|.|++|+|||||++.++-...
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC
Confidence 46899999999999999999987543
No 401
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.13 E-value=0.037 Score=53.12 Aligned_cols=114 Identities=15% Similarity=0.108 Sum_probs=58.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC--CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN--LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 108 (979)
..+++|.|++|+|||||++.++-... .....+++.-... .+..+. ..+.++.-.+=.........+.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~- 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK---PDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALA- 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHh-
Confidence 36899999999999999999976543 2333344432111 111111 11112221111122344455555565
Q ss_pred CCeEEEEEcCCCCccc---hhhhcCCCCC-CCCCcEEEEEcCChhhh
Q 002024 109 EKRILVILDDVWERID---LQKVGIPLGE-DHEGCNILLTSRSQGVC 151 (979)
Q Consensus 109 ~~~~LlvlDd~~~~~~---~~~l~~~~~~-~~~~~~iiiTtr~~~~~ 151 (979)
.++-++++|+-..--+ ...+...+.. ...+..||++|.+.+..
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 5667788898643211 1112111111 12366788888876543
No 402
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.10 E-value=0.083 Score=50.69 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=45.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC-CeE
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME-KRI 112 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~ 112 (979)
+.|.|.+|+|||++|.+++... ...++++.-....+. +..+.|.+--.....+.........+.+.+... +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCC
Confidence 6799999999999999998652 235667766555544 344443332222222222222233444444321 233
Q ss_pred EEEEcCC
Q 002024 113 LVILDDV 119 (979)
Q Consensus 113 LlvlDd~ 119 (979)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 6889986
No 403
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=95.10 E-value=0.51 Score=49.27 Aligned_cols=37 Identities=19% Similarity=0.219 Sum_probs=28.7
Q ss_pred HHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 20 KQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 20 ~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+++...+..+. .....++|+.|+||+++|..++...-
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 45566665443 46778999999999999999998764
No 404
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.10 E-value=0.046 Score=63.24 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=46.4
Q ss_pred CCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 8 SKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
....++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+.+.... .-...+.++|....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r--~~~p~v~v~c~~~~ 250 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR--ADKPLVYLNCAALP 250 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc--CCCCeEEEEcccCC
Confidence 45678999999998888775 222356779999999999999999886541 22234567776543
No 405
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.09 E-value=0.087 Score=51.09 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+++|.|+.|.|||||++.++--..
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999987653
No 406
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.09 E-value=0.16 Score=53.16 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=40.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
..+++.|+|.+|+|||+++.+++.... .....++|++.... ..++.+...+ ++.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~--~~ge~vlyvs~~e~--~~~l~~~~~~-~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGA--REGEPVLYVSTEES--PEELLENARS-FGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHH--hcCCcEEEEEecCC--HHHHHHHHHH-cCC
Confidence 458999999999999999999999887 34777999887643 4444444433 543
No 407
>PTZ00301 uridine kinase; Provisional
Probab=95.05 E-value=0.036 Score=55.33 Aligned_cols=26 Identities=35% Similarity=0.673 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|++|+||||+|+.+++...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 36899999999999999999988764
No 408
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.03 E-value=0.093 Score=50.83 Aligned_cols=26 Identities=42% Similarity=0.564 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+++|.|++|+|||||++.++--..
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 46899999999999999999986543
No 409
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.03 E-value=0.072 Score=51.14 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=36.8
Q ss_pred chhHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 12 FESRKSIVKQLLEALN---NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~---~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
++|....|.++.+.+. ..+ ..|.|+|..|+||+.+|+.+.+.... .-...+-++|+.-
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~-~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~ 61 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD-LPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAAL 61 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST-S-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS
T ss_pred CEeCCHHHHHHHHHHHHHhCCC-CCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhh
Confidence 4677788888777664 233 45669999999999999999884331 1122345566543
No 410
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.03 E-value=0.21 Score=51.26 Aligned_cols=53 Identities=23% Similarity=0.256 Sum_probs=36.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
...+.|.|++|+|||+++.+++..... ....++|++... +..++.+. +++++.
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~--~~~~i~~~-~~~~g~ 72 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEE--SRESIIRQ-AAQFGM 72 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccC--CHHHHHHH-HHHhCC
Confidence 478999999999999999998876542 345678887643 34444433 555553
No 411
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.01 E-value=0.13 Score=51.21 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
++++|+|+.|.||||+++.++-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999997644
No 412
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.99 E-value=0.16 Score=53.74 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=36.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
..++.|.|++|+|||+++.+++...... .-..++|++... +..++...+..
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~ 80 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLG 80 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHH
Confidence 3688899999999999999998876522 245688887755 34445555443
No 413
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.98 E-value=0.062 Score=63.04 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=55.2
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhC
Q 002024 8 SKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLG 87 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~ 87 (979)
....++|+++.++.+...+... +.+.++|+.|+|||++|+.+++..... .|..++++. ....+...+++.++.+++
T Consensus 16 ~~~~viG~~~a~~~l~~a~~~~--~~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 16 LIDQVIGQEEAVEIIKKAAKQK--RNVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred hHhhccCHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 4677899999999888877665 366699999999999999999877532 344444333 223355666777777765
Q ss_pred C
Q 002024 88 L 88 (979)
Q Consensus 88 ~ 88 (979)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 4
No 414
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.97 E-value=0.22 Score=47.43 Aligned_cols=115 Identities=20% Similarity=0.118 Sum_probs=61.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC---CCHHHHHHHHH---HHhCCc----cccc-chHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN---LSIVKIQGEIA---AVLGLT----ICGI-EESARAG 100 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~i~---~~l~~~----~~~~-~~~~~~~ 100 (979)
..|-|++..|.||||.|-.++.+.. .+-..|..+.+... .......+.+. .+.+.. ..+. .+...+.
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~--~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRAL--GHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHH--HCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 5788889999999999999998876 33344444433222 23333333220 000110 0010 1111222
Q ss_pred HH----HHHHhcCCeEEEEEcCCCCc-----cchhhhcCCCCCCCCCcEEEEEcCCh
Q 002024 101 YL----WERIKMEKRILVILDDVWER-----IDLQKVGIPLGEDHEGCNILLTSRSQ 148 (979)
Q Consensus 101 ~~----~~~l~~~~~~LlvlDd~~~~-----~~~~~l~~~~~~~~~~~~iiiTtr~~ 148 (979)
.. .+.+..+.-=++|||++-.. .+.+.+...+.....+.-||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22 33344566779999997422 22333333343445677899999975
No 415
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.86 Score=51.86 Aligned_cols=170 Identities=11% Similarity=0.049 Sum_probs=93.8
Q ss_pred CchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHH
Q 002024 11 IFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVK 77 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 77 (979)
.+-|-.+.+..+.+... ....+-+..||++|+|||-++++++++.... .+.++. +
T Consensus 185 ~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~-----~~~i~~--p----- 252 (693)
T KOG0730|consen 185 DIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAF-----LFLING--P----- 252 (693)
T ss_pred ccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCce-----eEeccc--H-----
Confidence 45566666666665542 1235677899999999999999999988621 112211 1
Q ss_pred HHHHHHHHhCCcccccchHHHHHHHHHHHhcCC-eEEEEEcCCCCcc---------c---hhhhcCCCCCCC--CCcEEE
Q 002024 78 IQGEIAAVLGLTICGIEESARAGYLWERIKMEK-RILVILDDVWERI---------D---LQKVGIPLGEDH--EGCNIL 142 (979)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~LlvlDd~~~~~---------~---~~~l~~~~~~~~--~~~~ii 142 (979)
++.+.+.+. .+........+.. ..+ +.++.+|+++... + ...+...+.... .+..||
T Consensus 253 ---eli~k~~gE----te~~LR~~f~~a~-k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl 324 (693)
T KOG0730|consen 253 ---ELISKFPGE----TESNLRKAFAEAL-KFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVL 324 (693)
T ss_pred ---HHHHhcccc----hHHHHHHHHHHHh-ccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEE
Confidence 233333221 2222233333333 355 8899999886542 1 111111111222 233344
Q ss_pred EEcCChhhh----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 143 LTSRSQGVC----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 143 iTtr~~~~~----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
-+|+...-. .+-+..+.+++.-.+.++-.++++.......-. .......++..+.|+-
T Consensus 325 ~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~--~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 325 AATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL--SDVDLEDIAVSTHGYV 386 (693)
T ss_pred EecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc--chhhHHHHHHHccchh
Confidence 466654332 112345678888888888888887776543332 2234677888888764
No 416
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=94.95 E-value=0.058 Score=50.14 Aligned_cols=37 Identities=22% Similarity=0.078 Sum_probs=28.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV 69 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~ 69 (979)
.+.|.|+.|+|||+.+..++...........++++..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p 38 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAP 38 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcC
Confidence 3678999999999999999888765444566777643
No 417
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.93 E-value=0.11 Score=50.79 Aligned_cols=116 Identities=17% Similarity=0.275 Sum_probs=60.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc--CCCHHHHH------HHHHHHhCCcc------cccc-h
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH--NLSIVKIQ------GEIAAVLGLTI------CGIE-E 95 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~------~~i~~~l~~~~------~~~~-~ 95 (979)
..+++|.|++|+|||||++.++-... .....+++.-.+ ..+..... .++++.++... ...+ .
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 46899999999999999999986543 223333332111 11222211 12344444321 1111 2
Q ss_pred HHHHHHHHHHHhcCCeEEEEEcCCCCccc------hhhhcCCCCCCCCCcEEEEEcCChhhh
Q 002024 96 SARAGYLWERIKMEKRILVILDDVWERID------LQKVGIPLGEDHEGCNILLTSRSQGVC 151 (979)
Q Consensus 96 ~~~~~~~~~~l~~~~~~LlvlDd~~~~~~------~~~l~~~~~~~~~~~~iiiTtr~~~~~ 151 (979)
......+.+.+. .++-++++|+-..--+ +..+...+.. ..+..||++|.+.+..
T Consensus 102 ~~qrl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHH
Confidence 333445555565 6677888998643211 2222222211 1256788888776544
No 418
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.92 E-value=0.083 Score=48.38 Aligned_cols=107 Identities=16% Similarity=0.256 Sum_probs=64.3
Q ss_pred cChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccch-hhccC
Q 002024 400 IPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRL 476 (979)
Q Consensus 400 ~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L 476 (979)
++...|..+++|+.+.+...+...-...|..+.+|+.+.+.++ +..+ ..+.++.+|+++.+.. .+..++. .+..+
T Consensus 3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 4567788899999999987555233456888888999999875 6655 4577787899999876 5555553 56678
Q ss_pred ccccEEecCCCCCccccCcchhccCcCCcEEEccc
Q 002024 477 SHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWN 511 (979)
Q Consensus 477 ~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~ 511 (979)
++|+.+.+... +..++...+.+. +|+.+.+..
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 88998888652 566666667776 888877654
No 419
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.92 E-value=0.023 Score=53.25 Aligned_cols=24 Identities=50% Similarity=0.800 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|.+.|++|+||||+|+.++....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986664
No 420
>PRK05973 replicative DNA helicase; Provisional
Probab=94.91 E-value=0.12 Score=52.42 Aligned_cols=47 Identities=19% Similarity=0.152 Sum_probs=34.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
..++.|.|.+|+|||+++.+++..... ....+++++.... ..++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~--~Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMK--SGRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEEeCC--HHHHHHH
Confidence 468899999999999999999987753 2456777766543 3444444
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.89 E-value=0.027 Score=56.80 Aligned_cols=26 Identities=38% Similarity=0.603 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+|+|.|++|+|||||++.++...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999999876
No 422
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.86 E-value=0.066 Score=54.78 Aligned_cols=48 Identities=23% Similarity=0.158 Sum_probs=32.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
..++.|.|++|+|||+++.+++.....+. -..++|++...+ ..++.+.
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~--~~~l~~~ 66 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEP--PEELIEN 66 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCC--HHHHHHH
Confidence 47899999999999999999987765221 346778876443 4444444
No 423
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.84 E-value=0.096 Score=62.62 Aligned_cols=125 Identities=19% Similarity=0.244 Sum_probs=74.6
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc-----
Q 002024 19 VKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI----- 93 (979)
Q Consensus 19 l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~----- 93 (979)
..+|.+.+... .++.|.|+.|+||||-.-+++.+.. ......+-++-.+.-....+.+.++++++.+..+.
T Consensus 55 ~~~i~~ai~~~--~vvii~getGsGKTTqlP~~lle~g--~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i 130 (845)
T COG1643 55 RDEILKAIEQN--QVVIIVGETGSGKTTQLPQFLLEEG--LGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI 130 (845)
T ss_pred HHHHHHHHHhC--CEEEEeCCCCCChHHHHHHHHHhhh--cccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE
Confidence 34444444444 6888999999999998888887765 23345666666666677888888999987652211
Q ss_pred ------chHHHH-----HHHHHHHhc----CCeEEEEEcCCCCccchhhh-----cCCCCCCCCCcEEEEEcCC
Q 002024 94 ------EESARA-----GYLWERIKM----EKRILVILDDVWERIDLQKV-----GIPLGEDHEGCNILLTSRS 147 (979)
Q Consensus 94 ------~~~~~~-----~~~~~~l~~----~~~~LlvlDd~~~~~~~~~l-----~~~~~~~~~~~~iiiTtr~ 147 (979)
+....+ ..+.+.+.. .+--.+|+|++++..--..+ ...+....+..||||+|=.
T Consensus 131 Rfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSAT 204 (845)
T COG1643 131 RFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSAT 204 (845)
T ss_pred EeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEecc
Confidence 001111 333344431 45568999999876321111 1111111224789998754
No 424
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.82 E-value=0.019 Score=51.07 Aligned_cols=29 Identities=38% Similarity=0.620 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeE
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDTV 64 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~ 64 (979)
|.|+|.+|+|||++|+.++.... ..|.++
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~--~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLG--LSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT----EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcC--CceeEE
Confidence 56899999999999999998876 456543
No 425
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.048 Score=49.08 Aligned_cols=68 Identities=16% Similarity=0.115 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM 108 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 108 (979)
+-|.|+|.+|+||||++.++++... .-|+.+++-..-..+...--.+. +..-.+++.....+-..+.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~gyDE~y--~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEGYDEEY--KCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhcccccc--cCccccHHHHHHHHHHHHhc
Confidence 4578999999999999999996654 23666665433333322221111 12234455566666665553
No 426
>PRK06762 hypothetical protein; Provisional
Probab=94.81 E-value=0.028 Score=54.36 Aligned_cols=25 Identities=36% Similarity=0.601 Sum_probs=22.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+|.|.|++|+||||+|+.+++..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3688999999999999999999876
No 427
>PRK13768 GTPase; Provisional
Probab=94.80 E-value=0.13 Score=53.30 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=28.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV 69 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~ 69 (979)
.+++|.|++|+||||++..++..... ....++.++.
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~--~g~~v~~i~~ 38 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEE--QGYDVAIVNL 38 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHh--cCCceEEEEC
Confidence 57899999999999999999988763 2345555554
No 428
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.79 E-value=0.029 Score=56.43 Aligned_cols=27 Identities=41% Similarity=0.580 Sum_probs=24.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+|+|.|++|+|||||++.++....
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457899999999999999999988764
No 429
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=1.1 Score=47.08 Aligned_cols=139 Identities=12% Similarity=0.137 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhcc-------------------CCCeEEEEEeccCCC
Q 002024 15 RKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESK-------------------RYDTVVMAVVSHNLS 74 (979)
Q Consensus 15 R~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~-------------------~f~~~~~~~~~~~~~ 74 (979)
....++.+...+..+. .....++| |+||+++|+.++...--.. .+..+.|+.-....
T Consensus 7 q~~~~~~L~~~~~~~rl~hAyLf~G--~~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~- 83 (290)
T PRK07276 7 QPKVFQRFQTILEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV- 83 (290)
T ss_pred HHHHHHHHHHHHHcCCcceeeeeeC--CccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc-
Confidence 3455666666666554 35677888 5899999999988653211 11122232211000
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCC-
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRS- 147 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~- 147 (979)
+ ..+.+..+.+.+. .+++-++|+|+++... ..+.+...+-.-..+..+|.+|.+
T Consensus 84 ------------------I-~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~ 144 (290)
T PRK07276 84 ------------------I-KTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDE 144 (290)
T ss_pred ------------------C-CHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 0 1122233333332 3567789999998763 234443333333344555555544
Q ss_pred hhhhhcc-CCcceEEcCCCCHHHHHHHHHH
Q 002024 148 QGVCNQM-DAQKIFIVRTLLEEESWILFRE 176 (979)
Q Consensus 148 ~~~~~~~-~~~~~~~l~~L~~~e~~~l~~~ 176 (979)
..+..-. +.-+.+.+.+ +.++..+.+.+
T Consensus 145 ~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 145 NKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred hhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 4444322 2236777766 66666666653
No 430
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.78 E-value=0.12 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+|+|.|.+|+||||+++.+.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999988763
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.77 E-value=0.16 Score=52.65 Aligned_cols=89 Identities=21% Similarity=0.286 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc-
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM- 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~- 108 (979)
...++++|++|+||||+++.++..... .-..+.+++..... ...+-.+..++.++.+.....+...+....+.+..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 152 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE 152 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc
Confidence 378999999999999999999887652 22456667665332 12222233344455444332333344444455542
Q ss_pred CCeEEEEEcCCCC
Q 002024 109 EKRILVILDDVWE 121 (979)
Q Consensus 109 ~~~~LlvlDd~~~ 121 (979)
++.=++++|....
T Consensus 153 ~~~D~ViIDt~Gr 165 (270)
T PRK06731 153 ARVDYILIDTAGK 165 (270)
T ss_pred CCCCEEEEECCCC
Confidence 3456788998743
No 432
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.77 E-value=0.051 Score=50.34 Aligned_cols=39 Identities=26% Similarity=0.454 Sum_probs=28.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
++|.|+|+.|+|||||++.+++....+ .+...+..+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 478999999999999999999998743 344444555554
No 433
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.72 E-value=0.089 Score=50.23 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=59.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
..+++|.|+.|.|||||++.++.... .....+++......... .......++.-.+=.........+...+. ..
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~---~~~G~i~~~~~~~~~~~--~~~~~~~i~~~~qlS~G~~~r~~l~~~l~-~~ 98 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLK---PTSGEILIDGKDIAKLP--LEELRRRIGYVPQLSGGQRQRVALARALL-LN 98 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccCC--HHHHHhceEEEeeCCHHHHHHHHHHHHHh-cC
Confidence 36899999999999999999986543 23334444322111100 01111222211111122344445555565 56
Q ss_pred eEEEEEcCCCCccc------hhhhcCCCCCCCCCcEEEEEcCChhhhhc
Q 002024 111 RILVILDDVWERID------LQKVGIPLGEDHEGCNILLTSRSQGVCNQ 153 (979)
Q Consensus 111 ~~LlvlDd~~~~~~------~~~l~~~~~~~~~~~~iiiTtr~~~~~~~ 153 (979)
+-++++|+....-+ +..+...+.. .+..++++|.+.+....
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAE--EGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHH
Confidence 77888999754322 2222222212 24568888877665543
No 434
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.71 E-value=0.083 Score=57.47 Aligned_cols=78 Identities=19% Similarity=0.249 Sum_probs=50.7
Q ss_pred CCCchhHHHHHHHHHHHhcC---------C-----CceEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCeEEEEEe-ccC
Q 002024 9 KGIFESRKSIVKQLLEALNN---------E-----NVSVIGLCGMGGVGKTTLAKEIGKQVQESK-RYDTVVMAVV-SHN 72 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~---------~-----~~~~i~i~G~~GiGKT~La~~~~~~~~~~~-~f~~~~~~~~-~~~ 72 (979)
...++|.++.+..+...+.. . ..+-|.++|++|+|||++|+.++....... .++...|... ...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG 93 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVG 93 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCccc
Confidence 56789999999998876632 0 135788999999999999999998875211 1222222221 122
Q ss_pred CCHHHHHHHHHHHh
Q 002024 73 LSIVKIQGEIAAVL 86 (979)
Q Consensus 73 ~~~~~~~~~i~~~l 86 (979)
.+..+..+.++...
T Consensus 94 ~d~e~~ir~L~~~A 107 (443)
T PRK05201 94 RDVESIIRDLVEIA 107 (443)
T ss_pred CCHHHHHHHHHHHH
Confidence 35566666665554
No 435
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.0024 Score=60.62 Aligned_cols=91 Identities=16% Similarity=0.214 Sum_probs=60.5
Q ss_pred CCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCccccccccC
Q 002024 838 QNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSG 917 (979)
Q Consensus 838 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~ 917 (979)
..++.++-+++. +.... ..-+..+++++.|.+.+|..+.....+.. ....|+|+.|+|++|+.+|+-...
T Consensus 101 ~~IeaVDAsds~-I~~eG-le~L~~l~~i~~l~l~~ck~~dD~~L~~l--------~~~~~~L~~L~lsgC~rIT~~GL~ 170 (221)
T KOG3864|consen 101 VKIEAVDASDSS-IMYEG-LEHLRDLRSIKSLSLANCKYFDDWCLERL--------GGLAPSLQDLDLSGCPRITDGGLA 170 (221)
T ss_pred ceEEEEecCCch-HHHHH-HHHHhccchhhhheeccccchhhHHHHHh--------cccccchheeeccCCCeechhHHH
Confidence 346777777753 33321 12256778888889989987766544322 115789999999999988875322
Q ss_pred CceeeccccceeeeccCCCcee
Q 002024 918 QFLIEFPALEMLTIAECPKIKT 939 (979)
Q Consensus 918 ~~~~~~~~L~~L~i~~C~~L~~ 939 (979)
....+++|+.|.+++-|.+..
T Consensus 171 -~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 171 -CLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred -HHHHhhhhHHHHhcCchhhhc
Confidence 123378888898888777655
No 436
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.68 E-value=0.071 Score=49.93 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+++|.|++|.|||||++.++....
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 36889999999999999999976543
No 437
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.11 Score=50.57 Aligned_cols=25 Identities=44% Similarity=0.493 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|.|||||++.++-..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998754
No 438
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.65 E-value=0.12 Score=62.30 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=85.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh-hhccC-------------CCeEEEEEeccCCCHHHHHHHHHHHhCCcccccch
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV-QESKR-------------YDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEE 95 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~-~~~~~-------------f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 95 (979)
+.+.+.|+|+.|.||||+.+.++-.. ..... |+.+ +.... ..+-+.+-+..+. .+
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i-~~~i~----~~~si~~~LStfS------~~ 389 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEI-FADIG----DEQSIEQNLSTFS------GH 389 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhhe-eeecC----hHhHHhhhhhHHH------HH
Confidence 34789999999999999999987651 11111 1111 01111 1111111111111 01
Q ss_pred HHHHHHHHHHHhcCCeEEEEEcCCCCc---cchh----hhcCCCCCCCCCcEEEEEcCChhhhhccCCc---ceEEcCCC
Q 002024 96 SARAGYLWERIKMEKRILVILDDVWER---IDLQ----KVGIPLGEDHEGCNILLTSRSQGVCNQMDAQ---KIFIVRTL 165 (979)
Q Consensus 96 ~~~~~~~~~~l~~~~~~LlvlDd~~~~---~~~~----~l~~~~~~~~~~~~iiiTtr~~~~~~~~~~~---~~~~l~~L 165 (979)
......+.... ..+-|+++|+...- .+.. .+...+. ..|..+|+||...++....... ....+ .+
T Consensus 390 m~~~~~il~~~--~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~-~~ 464 (771)
T TIGR01069 390 MKNISAILSKT--TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASV-LF 464 (771)
T ss_pred HHHHHHHHHhc--CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEE-EE
Confidence 11122222222 57899999997542 1111 1222221 2577899999987664322111 11111 11
Q ss_pred CHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHHHhhc
Q 002024 166 LEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQLKKS 231 (979)
Q Consensus 166 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~~~ 231 (979)
+. +......+...+... ...+-.|++++ |+|-.+..-|..+..... ..+++++.++...
T Consensus 465 d~-~~l~p~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~-~~~~~li~~L~~~ 523 (771)
T TIGR01069 465 DE-ETLSPTYKLLKGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFK-EEINVLIEKLSAL 523 (771)
T ss_pred cC-CCCceEEEECCCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhH-HHHHHHHHHHHHH
Confidence 11 111100011111111 23477788776 688877777776654433 5667777666543
No 439
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.65 E-value=0.045 Score=59.73 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
...++|+||+|+|||||||.+.--
T Consensus 362 G~~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 362 GEALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred CceEEEECCCCccHHHHHHHHHcc
Confidence 368899999999999999998643
No 440
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.63 E-value=0.028 Score=54.32 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|-||-|+||||||+.++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999999886
No 441
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.62 E-value=0.052 Score=58.33 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=39.2
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 8 SKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
+...+||.++.+..+.-.+-++...-+.|.|+.|+||||+++.++.-.
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 356789999999988666656555567799999999999999998765
No 442
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.59 E-value=0.033 Score=55.16 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
+.++|+|.|++|+||||+|+.+++..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998765
No 443
>PRK15453 phosphoribulokinase; Provisional
Probab=94.57 E-value=0.21 Score=51.43 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+|+|.|.+|+||||+|+.+++.+.
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 347899999999999999999997765
No 444
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.56 E-value=0.16 Score=52.26 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh--hccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCc-------ccccch-----
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ--ESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLT-------ICGIEE----- 95 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~--~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~----- 95 (979)
.+.++|.|.+|+|||+|+..+++... .+..-+.++++.+... ....++.+++...=..+ ..+...
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 47889999999999999999987754 1122466777777654 34556666654432111 011111
Q ss_pred -HHHHHHHHHHHh-c-CCeEEEEEcCCCCcc
Q 002024 96 -SARAGYLWERIK-M-EKRILVILDDVWERI 123 (979)
Q Consensus 96 -~~~~~~~~~~l~-~-~~~~LlvlDd~~~~~ 123 (979)
...+..+.+.+. + +++.|+++||+...+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A 179 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDMTNYA 179 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcChhHHH
Confidence 111233444444 3 789999999986543
No 445
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.54 E-value=0.12 Score=52.42 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
|.|.|++|+||||+|+.+++.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998764
No 446
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.54 E-value=0.065 Score=56.60 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=44.2
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVK 77 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 77 (979)
|.....++=+.+....+...+..+ +-|.|.|++|+|||++|+.++.... ..| +.+.+....+..+
T Consensus 41 p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~--~~~---~rV~~~~~l~~~D 105 (327)
T TIGR01650 41 PDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLN--WPC---VRVNLDSHVSRID 105 (327)
T ss_pred CCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHC--CCe---EEEEecCCCChhh
Confidence 334445666666677777777543 4688999999999999999999886 222 3445544444433
No 447
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.51 E-value=0.077 Score=52.08 Aligned_cols=51 Identities=27% Similarity=0.374 Sum_probs=36.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccc
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTIC 91 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 91 (979)
.|+|+|-||+||||+|..++.+...+.. ..|.-|++..+.+ +.+++|...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~n-------L~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSN-------LPEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCC-------hHHhcCCCCC
Confidence 5899999999999999997777765443 4566777666544 3455666543
No 448
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.49 E-value=0.011 Score=56.36 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=53.5
Q ss_pred CcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccc
Q 002024 656 PHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASL 728 (979)
Q Consensus 656 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l 728 (979)
.+..++.++.|.+.+|..+.+|+.+ .. .+.+|+|+.|+|++|+.+++- ...++..+++|+.|.+.+.+.+
T Consensus 120 ~L~~l~~i~~l~l~~ck~~dD~~L~-~l-~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 120 HLRDLRSIKSLSLANCKYFDDWCLE-RL-GGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHhccchhhhheeccccchhhHHHH-Hh-cccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 4455677888888889988888775 22 237899999999999998875 4566888888888888775533
No 449
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.44 E-value=0.18 Score=51.09 Aligned_cols=24 Identities=38% Similarity=0.342 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|.|+|++|+||||+|+.++....
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987764
No 450
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.43 E-value=0.12 Score=51.39 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
....+|+|+|++|+||||+|+.++....
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~ 49 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALH 49 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4457999999999999999999998775
No 451
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.43 E-value=0.17 Score=50.48 Aligned_cols=86 Identities=29% Similarity=0.382 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCc-------ccccchHHH-----
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLT-------ICGIEESAR----- 98 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~~----- 98 (979)
..++|.|++|+|||+|+..+++... -+.++++.+... ....++.+++-..-..+ ..+.....+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 6788999999999999999998874 234467766544 44556665553331111 111111111
Q ss_pred -HHHHHHHHh-cCCeEEEEEcCCCC
Q 002024 99 -AGYLWERIK-MEKRILVILDDVWE 121 (979)
Q Consensus 99 -~~~~~~~l~-~~~~~LlvlDd~~~ 121 (979)
.-.+.+.+. +++..|+++||+..
T Consensus 92 ~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 92 TALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred cchhhhHHHhhcCCceeehhhhhHH
Confidence 122222232 58999999999743
No 452
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.43 E-value=0.044 Score=58.88 Aligned_cols=49 Identities=12% Similarity=0.183 Sum_probs=41.9
Q ss_pred CCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 8 SKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+...+||.++.+..|...+-++...-|.|.|+.|+|||++|+.+++-..
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4567899999999998888777777788999999999999999977654
No 453
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.41 E-value=0.083 Score=54.42 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 18 IVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 18 ~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+.+...+.... +..|+||+|+|||+++..++...
T Consensus 6 Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 3455555555442 67899999999999888887776
No 454
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.40 E-value=0.13 Score=57.30 Aligned_cols=91 Identities=20% Similarity=0.198 Sum_probs=56.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCc-------ccccch------H
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLT-------ICGIEE------S 96 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~------~ 96 (979)
.+.++|.|.+|+|||+|+.+++.....+ +-+.++++-+... ..+.++...+...-..+ ..+.+. .
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 4788999999999999999999887643 4566677665433 34455555554332111 111111 1
Q ss_pred HHHHHHHHHHh-c-CCeEEEEEcCCCCc
Q 002024 97 ARAGYLWERIK-M-EKRILVILDDVWER 122 (979)
Q Consensus 97 ~~~~~~~~~l~-~-~~~~LlvlDd~~~~ 122 (979)
..+..+.+.+. + ++.+|+++|++...
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 11233444443 3 89999999998544
No 455
>PRK03839 putative kinase; Provisional
Probab=94.34 E-value=0.038 Score=54.24 Aligned_cols=24 Identities=38% Similarity=0.684 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|.|.|++|+||||+++.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999875
No 456
>PRK04040 adenylate kinase; Provisional
Probab=94.33 E-value=0.041 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|+|++|+||||+++.+++...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 6899999999999999999998874
No 457
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.30 E-value=0.088 Score=51.15 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
-+|+|.||+|+||+|+|+.++..+.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg 29 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLG 29 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhC
Confidence 5799999999999999999999886
No 458
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.30 E-value=0.053 Score=53.28 Aligned_cols=36 Identities=33% Similarity=0.454 Sum_probs=28.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV 68 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~ 68 (979)
.++|.|+||+|+|||+|++.+..... ..|..++..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~--~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP--DKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST--TTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc--cccccceeec
Confidence 37889999999999999999998876 4564444443
No 459
>PRK14527 adenylate kinase; Provisional
Probab=94.29 E-value=0.11 Score=51.61 Aligned_cols=26 Identities=27% Similarity=0.393 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|.|.|++|+||||+|+.+++...
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999988765
No 460
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.29 E-value=0.062 Score=50.48 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 17 SIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 17 ~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
+.+++|.+.+.+ +++++.|++|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG---KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhh
Confidence 445667777655 68889999999999999999754
No 461
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.24 E-value=0.21 Score=60.47 Aligned_cols=178 Identities=19% Similarity=0.187 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh---hh------c-----cCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccch
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV---QE------S-----KRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEE 95 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~---~~------~-----~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 95 (979)
+.+++.|+||.+.||||+.+.++--. .. . ..|+.+ +.......++..-.......
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~~i-~~~ig~~~si~~~lStfS~~---------- 394 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFKEI-FADIGDEQSIEQSLSTFSGH---------- 394 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccceE-EEecCCccchhhchhHHHHH----------
Confidence 45788999999999999999886431 10 0 112222 23333222222111111111
Q ss_pred HHHHHHHHHHHhcCCeEEEEEcCCCCc---cchh----hhcCCCCCCCCCcEEEEEcCChhhhhccCCc---ceEEcCCC
Q 002024 96 SARAGYLWERIKMEKRILVILDDVWER---IDLQ----KVGIPLGEDHEGCNILLTSRSQGVCNQMDAQ---KIFIVRTL 165 (979)
Q Consensus 96 ~~~~~~~~~~l~~~~~~LlvlDd~~~~---~~~~----~l~~~~~~~~~~~~iiiTtr~~~~~~~~~~~---~~~~l~~L 165 (979)
......+...+ ..+-|+++|+...- .+-. .+...+. ..|..+|+||...++....... ....+. +
T Consensus 395 m~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~ 469 (782)
T PRK00409 395 MTNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-F 469 (782)
T ss_pred HHHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-E
Confidence 11122223222 46779999997532 1111 1222222 2477899999987766433221 111111 1
Q ss_pred CHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHHHhh
Q 002024 166 LEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQLKK 230 (979)
Q Consensus 166 ~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~~ 230 (979)
+. +......+...+... ...+-.|++++ |+|-.+..-|.-+-.... ..+++++.++..
T Consensus 470 d~-~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~-~~~~~li~~l~~ 527 (782)
T PRK00409 470 DE-ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDK-EKLNELIASLEE 527 (782)
T ss_pred ec-CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhh-hHHHHHHHHHHH
Confidence 11 111110111111111 23477788876 688877777766654433 566777766544
No 462
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.21 E-value=0.053 Score=52.87 Aligned_cols=24 Identities=46% Similarity=0.836 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|+|.|.+|+||||+|+.++....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999998876
No 463
>PRK14531 adenylate kinase; Provisional
Probab=94.19 E-value=0.17 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.210 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+.|.|.|++|+||||+++.+++...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999998764
No 464
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=94.18 E-value=0.084 Score=53.03 Aligned_cols=58 Identities=17% Similarity=0.270 Sum_probs=44.1
Q ss_pred cCCCCCCchhHHHHHHH---HHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCC
Q 002024 5 TSSSKGIFESRKSIVKQ---LLEALNNE--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYD 62 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~---l~~~l~~~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~ 62 (979)
+-.....|||.+..-++ +.+++... ..+.+.+.|++|.|||+||..+.++...+-.|-
T Consensus 33 ~~~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFc 95 (456)
T KOG1942|consen 33 AVEVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFC 95 (456)
T ss_pred eeecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcc
Confidence 33457789998876654 55555422 348899999999999999999999998766663
No 465
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.17 E-value=0.11 Score=49.77 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=24.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..++++|+|++|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 3578999999999999999999988864
No 466
>PRK13949 shikimate kinase; Provisional
Probab=94.17 E-value=0.068 Score=51.55 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+.|+|+|+.|+||||+++.++....
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999998875
No 467
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.16 E-value=0.073 Score=55.37 Aligned_cols=26 Identities=50% Similarity=0.694 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+.|.|+|.+|+||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 46889999999999999999998874
No 468
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.16 E-value=0.069 Score=56.89 Aligned_cols=45 Identities=24% Similarity=0.397 Sum_probs=33.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
|++.+.|-||+||||+|.+.+-.... ...++.-++.....+..++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCccHHHH
Confidence 68999999999999999999988773 3456777766655444433
No 469
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.061 Score=54.77 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=24.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+..++|||+.|.|||-+|+.++....+
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~ 192 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGV 192 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCC
Confidence 567899999999999999999987763
No 470
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.15 E-value=0.045 Score=53.34 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++|.+.|++|+||||+|+.++....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 6899999999999999999988764
No 471
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=94.15 E-value=0.27 Score=50.14 Aligned_cols=47 Identities=23% Similarity=0.179 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
..++.|.|++|+|||++|.+++..... .-..++|++... +..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~--~g~~~~y~s~e~--~~~~l~~~ 62 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK--NGEKAMYISLEE--REERILGY 62 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCC--CHHHHHHH
Confidence 478899999999999999999887652 245677887755 34444333
No 472
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.12 E-value=0.046 Score=53.33 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998874
No 473
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.10 E-value=0.11 Score=51.43 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHH
Q 002024 21 QLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAG 100 (979)
Q Consensus 21 ~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 100 (979)
.+...+.+. .+++.|.|++|+|||++++.+.+...... ..++++...+. ....+.+..+.+... +.
T Consensus 9 a~~~~l~~~-~~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~~-----Aa~~L~~~~~~~a~T------i~ 74 (196)
T PF13604_consen 9 AVRAILTSG-DRVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTNK-----AAKELREKTGIEAQT------IH 74 (196)
T ss_dssp HHHHHHHCT-CSEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSHH-----HHHHHHHHHTS-EEE------HH
T ss_pred HHHHHHhcC-CeEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcHH-----HHHHHHHhhCcchhh------HH
Confidence 333444443 36888999999999999999988776432 34444433222 222344443322110 00
Q ss_pred HHHHHHh---------cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCCh
Q 002024 101 YLWERIK---------MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQ 148 (979)
Q Consensus 101 ~~~~~l~---------~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~ 148 (979)
....... ..++-++|+|++.... ++..+...... .+.++|+.--..
T Consensus 75 ~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 75 SFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp HHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred HHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 0000000 1234599999997653 34444433322 466777654433
No 474
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.09 E-value=0.16 Score=55.91 Aligned_cols=41 Identities=34% Similarity=0.438 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
+++.|.|.+|+|||.||-.++.+.........+++++..+.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 47899999999999999999999832244556667666554
No 475
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.09 E-value=0.57 Score=49.77 Aligned_cols=91 Identities=21% Similarity=0.279 Sum_probs=60.1
Q ss_pred CCchhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEE--eccCCC-----HH
Q 002024 10 GIFESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAV--VSHNLS-----IV 76 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~--~~~~~~-----~~ 76 (979)
..|+|-++.++++++.+. +..-+++.++||-|.|||+||+.+.+-.+. | .+|.- +.-... +.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 479999999999999885 334588999999999999999999887753 2 22221 111111 35
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHH
Q 002024 77 KIQGEIAAVLGLTICGIEESARAGYLWER 105 (979)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~ 105 (979)
+.-+++.+.++....+.-.......+.+.
T Consensus 136 ~~r~~~~~~~~~~i~g~l~p~~~~~L~~~ 164 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGELCPWCRKRLLEE 164 (358)
T ss_pred hHHHHHHHHhCcccCCCcCHHHHHHHHHH
Confidence 66666777777755544333333333333
No 476
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.04 E-value=0.13 Score=45.91 Aligned_cols=36 Identities=33% Similarity=0.443 Sum_probs=27.5
Q ss_pred HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 20 KQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 20 ~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+.+.+.+..+ .+|.+.|.=|+||||++|.+++....
T Consensus 6 ~~l~~~l~~g--~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 6 KKLAQILKPG--DVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HHHHHHHSS---EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred HHHHHhCCCC--CEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3445555443 79999999999999999999987653
No 477
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.12 Score=56.52 Aligned_cols=31 Identities=39% Similarity=0.515 Sum_probs=25.9
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002024 28 NENVSVIGLCGMGGVGKTTLAKEIGKQVQES 58 (979)
Q Consensus 28 ~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~ 58 (979)
-..++=|.++||+|.|||-+||++-.-...+
T Consensus 253 i~HVKGiLLyGPPGTGKTLiARqIGkMLNAr 283 (744)
T KOG0741|consen 253 IKHVKGILLYGPPGTGKTLIARQIGKMLNAR 283 (744)
T ss_pred ccceeeEEEECCCCCChhHHHHHHHHHhcCC
Confidence 3457889999999999999999998766533
No 478
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.98 E-value=0.11 Score=55.21 Aligned_cols=49 Identities=27% Similarity=0.373 Sum_probs=37.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
.+++.+.|-||+||||+|.+.+-...... ..+.-++.....+..++...
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999888877443 44777777666665554443
No 479
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.35 Score=47.54 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+-+|.||.|+||||||..++-+.
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999997653
No 480
>PRK00625 shikimate kinase; Provisional
Probab=93.94 E-value=0.049 Score=52.54 Aligned_cols=24 Identities=42% Similarity=0.671 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|.++|+.|+||||+++.+++...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998875
No 481
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=93.94 E-value=0.32 Score=53.39 Aligned_cols=79 Identities=20% Similarity=0.132 Sum_probs=61.7
Q ss_pred CCchhHHHHHHHHHHHhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC---C----CHHHHH
Q 002024 10 GIFESRKSIVKQLLEALN---NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN---L----SIVKIQ 79 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~---~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~---~----~~~~~~ 79 (979)
-.-|||+.+++.|.+.|. .++..+-+|.|.-|.|||.+.+.+.+....+ --.+..++++.. . ....+.
T Consensus 25 ~~~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~--~fvvs~v~ls~e~~lh~~~g~~~~~Y 102 (416)
T PF10923_consen 25 HIAVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEK--GFVVSEVDLSPERPLHGTGGQLEALY 102 (416)
T ss_pred ceeechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHc--CCEEEEEecCCCcccccccccHHHHH
Confidence 345999999999988776 5666778899999999999999999888743 235667776653 2 466799
Q ss_pred HHHHHHhCCcc
Q 002024 80 GEIAAVLGLTI 90 (979)
Q Consensus 80 ~~i~~~l~~~~ 90 (979)
++|++.+....
T Consensus 103 r~l~~nL~t~~ 113 (416)
T PF10923_consen 103 RELMRNLSTKT 113 (416)
T ss_pred HHHHHhcCCCC
Confidence 99999987654
No 482
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.94 E-value=0.069 Score=57.29 Aligned_cols=49 Identities=10% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 7 SSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
-+...++|.++.++.+.-.+.+.+..=+.+.|+.|+|||++|+.++.-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3566789999999987754433333347799999999999999998865
No 483
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.93 E-value=0.32 Score=47.78 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
....+|.|.|++|+||||+|+.+.....
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3347999999999999999999998775
No 484
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.90 E-value=0.15 Score=53.09 Aligned_cols=23 Identities=48% Similarity=0.790 Sum_probs=21.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhh
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
|.+.|.+|+||||+|+.+++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 77999999999999999998876
No 485
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.90 E-value=0.055 Score=57.29 Aligned_cols=27 Identities=33% Similarity=0.426 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+++|+|.+|+||||+.+.+.-...
T Consensus 408 pGdvvaVvGqSGaGKttllRmi~G~~~ 434 (593)
T COG2401 408 PGDVVAVVGQSGAGKTTLLRMILGAQK 434 (593)
T ss_pred CCCeEEEEecCCCCcchHHHHHHHHhh
Confidence 346889999999999999999977654
No 486
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.90 E-value=0.044 Score=53.40 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
+|+|.|.+|+||||+|+.++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999876
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.89 E-value=0.049 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++++|.|++|+||||+++.++....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988764
No 488
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.89 E-value=0.12 Score=56.37 Aligned_cols=66 Identities=23% Similarity=0.274 Sum_probs=47.2
Q ss_pred CCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
...++|+++.+..+...+..+ +-+.+.|++|+|||+||+.+++... .. .+++.+.......++...
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~--~~---~~~i~~t~~l~p~d~~G~ 88 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALG--LP---FVRIQCTPDLLPSDLLGT 88 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhC--CC---eEEEecCCCCCHHHhcCc
Confidence 444889999888877666554 4567899999999999999998886 23 345566555555554433
No 489
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=93.88 E-value=0.091 Score=60.25 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=37.3
Q ss_pred CCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 9 KGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
...++|....++++.+.+. ......|.|+|..|+||+.+|+.+.+.
T Consensus 218 f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 218 LGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 4558999999998888764 222356779999999999999999886
No 490
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.86 E-value=0.042 Score=54.88 Aligned_cols=23 Identities=52% Similarity=0.798 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
+|+|.|++|+||||+++.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 491
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.86 E-value=0.1 Score=60.39 Aligned_cols=65 Identities=14% Similarity=0.046 Sum_probs=43.9
Q ss_pred CCCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 7 SSKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
.....++|+...+.++.+.+. ......|.|+|..|+||+.+|+.+..... + .-...+.++|....
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~-r-~~~pfv~inca~~~ 267 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSP-R-GKKPFLALNCASIP 267 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCC-C-CCCCeEEeccccCC
Confidence 356689999998888876664 11224577999999999999999765432 1 11223567776543
No 492
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=93.85 E-value=0.12 Score=52.28 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=32.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
+.|+|+|-|||||||.+.++..-.. .....|..+-|+...|
T Consensus 1 r~IAiYGKGGIGKST~~~Nlsaala--~~G~kVl~iGCDPK~D 41 (273)
T PF00142_consen 1 RKIAIYGKGGIGKSTTASNLSAALA--EMGKKVLQIGCDPKAD 41 (273)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHH--HTT--EEEEEESSSST
T ss_pred CeEEEEcCCCcccChhhhHHHHHHH--hccceeeEecccCCCc
Confidence 5789999999999999999988877 3446788888876543
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.83 E-value=0.41 Score=55.61 Aligned_cols=53 Identities=23% Similarity=0.336 Sum_probs=37.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
..++.|.|++|+|||+++.+++.... .....++|++.... ..++.+. ++.++.
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~--~~g~~~~yis~e~~--~~~i~~~-~~~~g~ 325 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAAC--RRGERCLLFAFEES--RAQLIRN-ARSWGI 325 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC--HHHHHHH-HHHcCC
Confidence 46888999999999999999998765 33467888877543 4444443 345553
No 494
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.83 E-value=0.062 Score=46.50 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIG 52 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~ 52 (979)
...++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3789999999999999999986
No 495
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.80 E-value=0.41 Score=54.88 Aligned_cols=131 Identities=20% Similarity=0.271 Sum_probs=70.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc------cCCCeEEEEEeccCC-----CH------------HHHHHHHHHHhC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQES------KRYDTVVMAVVSHNL-----SI------------VKIQGEIAAVLG 87 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~------~~f~~~~~~~~~~~~-----~~------------~~~~~~i~~~l~ 87 (979)
...|+|+|+.|+|||||.+.++...... ..--.+.|++..... ++ ..-++..+..++
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~ 427 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFG 427 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcC
Confidence 3678999999999999999997655321 111234455433311 11 333444444444
Q ss_pred Cccccc-------chHHHHHHHHHHHhcCCeEEEEEcCCCCccc---hhhhcCCCCCCCCCcEEEEEcCChhhhhccCCc
Q 002024 88 LTICGI-------EESARAGYLWERIKMEKRILVILDDVWERID---LQKVGIPLGEDHEGCNILLTSRSQGVCNQMDAQ 157 (979)
Q Consensus 88 ~~~~~~-------~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~---~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~~~~ 157 (979)
.+.+.. +.-+...-...++.-.++=++|+|+=.+.-+ .+.+...+ ...+|+ ||+.|-++.+..... .
T Consensus 428 F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL-~~f~Gt-vl~VSHDr~Fl~~va-~ 504 (530)
T COG0488 428 FTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL-LDFEGT-VLLVSHDRYFLDRVA-T 504 (530)
T ss_pred CChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH-HhCCCe-EEEEeCCHHHHHhhc-c
Confidence 432211 1122233334444457888999998544322 22222222 233454 788888887776543 4
Q ss_pred ceEEcCC
Q 002024 158 KIFIVRT 164 (979)
Q Consensus 158 ~~~~l~~ 164 (979)
+.+.+.+
T Consensus 505 ~i~~~~~ 511 (530)
T COG0488 505 RIWLVED 511 (530)
T ss_pred eEEEEcC
Confidence 5555553
No 496
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.78 E-value=0.23 Score=54.93 Aligned_cols=88 Identities=17% Similarity=0.226 Sum_probs=50.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCc-------ccccch------H
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLT-------ICGIEE------S 96 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~------~ 96 (979)
...++|.|.+|+|||||++.++.... .+.+++.-+... ..+.++.......-+.+ ..+.+. .
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHH
Confidence 47889999999999999999986653 234444444333 33445554443332211 111111 1
Q ss_pred HHHHHHHHHHh-cCCeEEEEEcCCCCc
Q 002024 97 ARAGYLWERIK-MEKRILVILDDVWER 122 (979)
Q Consensus 97 ~~~~~~~~~l~-~~~~~LlvlDd~~~~ 122 (979)
..+..+.+.+. +++.+|+++|++...
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 11222333332 689999999998544
No 497
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.78 E-value=0.44 Score=48.76 Aligned_cols=38 Identities=18% Similarity=0.122 Sum_probs=30.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV 69 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~ 69 (979)
-+..|+||.|.|||+|.|.+..-......-.-|+||+-
T Consensus 88 ~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP 125 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITP 125 (369)
T ss_pred eEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECC
Confidence 34578999999999999999876655566667888864
No 498
>PRK06217 hypothetical protein; Validated
Probab=93.78 E-value=0.05 Score=53.49 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCC--CeEEEE
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRY--DTVVMA 67 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f--~~~~~~ 67 (979)
.|.|.|.+|+||||+|+.+++.... ..+ |.++|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceeec
Confidence 5889999999999999999988752 222 445553
No 499
>PRK14529 adenylate kinase; Provisional
Probab=93.75 E-value=0.2 Score=50.34 Aligned_cols=84 Identities=15% Similarity=0.122 Sum_probs=46.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCe--EEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDT--VVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
|.|.|++|+||||+|+.++..+... +.+. ++.-.+..........+.+++. ..-+++......+.+++.+...
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~ 77 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGK 77 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCC
Confidence 6789999999999999999887521 2211 1111122222222333333322 1223344455556666654334
Q ss_pred EEEEEcCCCCc
Q 002024 112 ILVILDDVWER 122 (979)
Q Consensus 112 ~LlvlDd~~~~ 122 (979)
.=+|||++-..
T Consensus 78 ~g~iLDGfPRt 88 (223)
T PRK14529 78 NGWLLDGFPRN 88 (223)
T ss_pred CcEEEeCCCCC
Confidence 45889998544
No 500
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.74 E-value=0.19 Score=55.60 Aligned_cols=89 Identities=20% Similarity=0.180 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHh-----CCcccccc-h------HHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVL-----GLTICGIE-E------SAR 98 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l-----~~~~~~~~-~------~~~ 98 (979)
...++|+|++|+|||||++.++.... ....++++.-.+...+.++........ +.-....+ . ...
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~ 241 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLT 241 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHH
Confidence 46889999999999999998875432 122344433223344444444332222 11111111 1 111
Q ss_pred HHHHHHHHh-cCCeEEEEEcCCCCc
Q 002024 99 AGYLWERIK-MEKRILVILDDVWER 122 (979)
Q Consensus 99 ~~~~~~~l~-~~~~~LlvlDd~~~~ 122 (979)
+..+.+.+. +++..|+++|++...
T Consensus 242 a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 242 ATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHcCCCEEEeccchHHH
Confidence 122333332 589999999998554
Done!