Query 002024
Match_columns 979
No_of_seqs 339 out of 4270
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 09:08:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002024.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002024hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 6.6E-40 2.2E-44 381.4 20.6 304 13-341 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 9.7E-34 3.3E-38 329.6 19.9 282 12-334 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 8.5E-33 2.9E-37 359.4 29.5 312 5-341 119-452 (1249)
4 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-31 3.6E-36 320.5 34.5 516 352-937 22-558 (606)
5 3t6q_A CD180 antigen; protein- 100.0 3.4E-31 1.2E-35 316.1 32.4 513 362-958 32-557 (606)
6 3rgz_A Protein brassinosteroid 100.0 1.6E-31 5.5E-36 325.8 29.6 531 359-944 122-724 (768)
7 1z6t_A APAF-1, apoptotic prote 100.0 2.6E-31 9E-36 314.9 28.6 307 6-338 120-449 (591)
8 3rgz_A Protein brassinosteroid 100.0 1.5E-31 5E-36 326.2 26.0 440 359-875 96-549 (768)
9 1ziw_A TOLL-like receptor 3; i 100.0 7.3E-31 2.5E-35 317.6 30.8 521 363-956 25-617 (680)
10 3t6q_A CD180 antigen; protein- 100.0 1.8E-30 6.2E-35 309.8 30.8 490 358-936 52-559 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-30 1.5E-34 306.4 29.6 461 359-913 52-559 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.2E-30 2.1E-34 301.4 28.2 170 368-543 10-184 (549)
13 1ziw_A TOLL-like receptor 3; i 100.0 1.7E-29 5.7E-34 305.7 31.4 528 359-937 45-622 (680)
14 2z63_A TOLL-like receptor 4, v 100.0 1.4E-29 4.8E-34 300.1 30.1 494 353-935 19-529 (570)
15 3j0a_A TOLL-like receptor 5; m 100.0 7.1E-29 2.4E-33 305.7 27.2 502 351-935 14-558 (844)
16 2z81_A CD282 antigen, TOLL-lik 100.0 5E-29 1.7E-33 293.7 24.3 476 352-935 16-508 (549)
17 2z63_A TOLL-like receptor 4, v 100.0 4.4E-28 1.5E-32 287.2 31.0 517 365-975 9-546 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 3.7E-27 1.3E-31 275.4 25.9 459 366-935 3-479 (520)
19 4g8a_A TOLL-like receptor 4; l 99.9 3.4E-26 1.2E-30 275.1 31.6 506 363-934 52-577 (635)
20 3j0a_A TOLL-like receptor 5; m 99.9 7.9E-27 2.7E-31 287.5 26.4 460 358-909 43-558 (844)
21 2z7x_B TOLL-like receptor 1, v 99.9 4.9E-27 1.7E-31 274.4 17.2 456 388-963 3-482 (520)
22 4eco_A Uncharacterized protein 99.9 8.8E-26 3E-30 268.5 23.6 171 363-542 81-364 (636)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-25 3.4E-30 265.4 23.3 457 364-935 32-508 (562)
24 4ecn_A Leucine-rich repeat pro 99.9 6.2E-26 2.1E-30 273.5 21.9 89 630-725 617-707 (876)
25 4ecn_A Leucine-rich repeat pro 99.9 1.3E-24 4.3E-29 262.1 25.6 392 363-854 323-842 (876)
26 4eco_A Uncharacterized protein 99.9 1.2E-24 4.1E-29 258.8 22.7 164 377-549 197-395 (636)
27 4g8a_A TOLL-like receptor 4; l 99.9 5.8E-24 2E-28 255.6 26.7 492 359-915 72-583 (635)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.9E-24 2E-28 250.3 23.5 469 383-964 29-512 (562)
29 1o6v_A Internalin A; bacterial 99.9 1.8E-23 6.1E-28 239.9 24.8 169 361-544 44-212 (466)
30 1o6v_A Internalin A; bacterial 99.9 2.1E-23 7.2E-28 239.3 22.7 342 383-874 44-385 (466)
31 3bz5_A Internalin-J, INLJ; leu 99.9 2.4E-22 8.1E-27 228.2 23.2 166 360-544 39-204 (457)
32 3v47_A TOLL-like receptor 5B a 99.9 3.8E-22 1.3E-26 228.8 24.5 172 366-544 13-193 (455)
33 4fmz_A Internalin; leucine ric 99.9 3.9E-22 1.3E-26 219.7 22.4 170 360-542 41-210 (347)
34 1jl5_A Outer protein YOPM; leu 99.9 9.3E-23 3.2E-27 231.3 17.5 147 383-547 9-169 (454)
35 3v47_A TOLL-like receptor 5B a 99.9 3E-21 1E-25 221.4 28.5 190 351-543 20-224 (455)
36 4fmz_A Internalin; leucine ric 99.9 4.7E-22 1.6E-26 219.1 20.7 308 378-759 37-344 (347)
37 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-21 3.6E-26 222.9 24.1 161 380-560 37-198 (457)
38 3o6n_A APL1; leucine-rich repe 99.9 4.7E-21 1.6E-25 214.6 25.5 301 361-758 43-349 (390)
39 3o6n_A APL1; leucine-rich repe 99.9 7.5E-21 2.6E-25 212.9 26.1 153 380-541 40-196 (390)
40 1jl5_A Outer protein YOPM; leu 99.9 2.2E-21 7.4E-26 220.1 17.6 404 362-909 10-427 (454)
41 2id5_A Lingo-1, leucine rich r 99.9 1.8E-20 6E-25 216.1 24.6 188 366-560 14-207 (477)
42 3oja_B Anopheles plasmodium-re 99.9 2.8E-20 9.7E-25 219.9 25.6 300 363-759 51-356 (597)
43 3oja_B Anopheles plasmodium-re 99.9 4.4E-20 1.5E-24 218.3 25.7 134 380-514 46-183 (597)
44 2id5_A Lingo-1, leucine rich r 99.8 2.7E-19 9.3E-24 206.2 23.5 299 353-726 23-331 (477)
45 3ogk_B Coronatine-insensitive 99.8 3.2E-21 1.1E-25 229.3 6.8 127 383-511 110-252 (592)
46 3ogk_B Coronatine-insensitive 99.8 1.2E-20 4.1E-25 224.3 11.0 139 774-933 402-547 (592)
47 2p1m_B Transport inhibitor res 99.8 3E-21 1E-25 229.7 -0.1 443 389-933 47-540 (594)
48 2p1m_B Transport inhibitor res 99.8 3.4E-20 1.2E-24 220.6 5.2 130 383-513 103-246 (594)
49 2ft3_A Biglycan; proteoglycan, 99.8 3.2E-18 1.1E-22 186.8 19.3 288 364-725 34-330 (332)
50 1xku_A Decorin; proteoglycan, 99.8 1.6E-17 5.4E-22 181.2 22.6 150 363-514 31-183 (330)
51 1ogq_A PGIP-2, polygalacturona 99.8 3.4E-18 1.2E-22 184.3 13.7 174 363-543 50-233 (313)
52 2z80_A TOLL-like receptor 2, v 99.7 8.4E-18 2.9E-22 185.2 16.3 279 365-705 33-317 (353)
53 3zyi_A Leucine-rich repeat-con 99.7 1.7E-17 5.8E-22 189.3 18.3 171 365-543 56-230 (452)
54 4fcg_A Uncharacterized protein 99.7 1.1E-17 3.9E-22 181.3 15.6 171 363-542 81-264 (328)
55 3zyj_A Leucine-rich repeat-con 99.7 1.9E-17 6.4E-22 188.2 17.5 172 365-544 45-220 (440)
56 1z7x_W Ribonuclease inhibitor; 99.7 3.8E-19 1.3E-23 204.2 3.1 157 385-542 3-181 (461)
57 1xku_A Decorin; proteoglycan, 99.7 2.3E-16 7.7E-21 172.0 23.0 172 362-544 51-229 (330)
58 2ft3_A Biglycan; proteoglycan, 99.7 1.5E-16 5E-21 173.6 21.3 269 362-700 53-331 (332)
59 1ogq_A PGIP-2, polygalacturona 99.7 2.2E-17 7.6E-22 177.9 13.5 153 385-544 50-210 (313)
60 1ozn_A Reticulon 4 receptor; N 99.7 1.3E-16 4.5E-21 169.8 19.2 195 361-561 30-233 (285)
61 4fcg_A Uncharacterized protein 99.7 7.7E-17 2.6E-21 174.7 17.1 196 359-561 100-309 (328)
62 1ozn_A Reticulon 4 receptor; N 99.7 1.9E-16 6.4E-21 168.7 18.5 189 366-561 14-209 (285)
63 3g06_A SSPH2 (leucine-rich rep 99.7 9.7E-16 3.3E-20 178.9 24.8 156 364-546 41-196 (622)
64 2z80_A TOLL-like receptor 2, v 99.7 2.6E-16 9E-21 173.2 18.5 202 353-561 43-257 (353)
65 1z7x_W Ribonuclease inhibitor; 99.7 1E-18 3.5E-23 200.7 -1.2 58 410-467 4-69 (461)
66 2z66_A Variable lymphocyte rec 99.7 8.3E-17 2.9E-21 173.4 13.7 174 367-546 11-190 (306)
67 3g06_A SSPH2 (leucine-rich rep 99.7 1.7E-15 5.9E-20 176.7 24.3 114 385-514 40-153 (622)
68 1h6u_A Internalin H; cell adhe 99.7 5.9E-16 2E-20 166.2 18.7 192 360-565 38-229 (308)
69 3zyj_A Leucine-rich repeat-con 99.7 5.5E-16 1.9E-20 176.1 16.8 185 353-547 55-247 (440)
70 3zyi_A Leucine-rich repeat-con 99.7 7.1E-16 2.4E-20 175.9 17.1 184 353-546 66-257 (452)
71 3o53_A Protein LRIM1, AGAP0063 99.6 7.8E-17 2.7E-21 174.2 6.7 262 365-675 12-276 (317)
72 2o6q_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 156.2 20.0 191 364-562 17-214 (270)
73 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-16 3.9E-21 172.9 7.3 265 386-729 11-276 (317)
74 1p9a_G Platelet glycoprotein I 99.6 3.8E-15 1.3E-19 158.2 18.0 194 361-562 8-204 (290)
75 2z66_A Variable lymphocyte rec 99.6 1.7E-15 5.8E-20 163.1 15.2 204 353-563 19-233 (306)
76 2o6q_A Variable lymphocyte rec 99.6 6.7E-15 2.3E-19 155.0 19.4 175 362-543 36-217 (270)
77 2z62_A TOLL-like receptor 4, v 99.6 4.5E-15 1.6E-19 157.0 17.8 195 362-563 27-234 (276)
78 2qen_A Walker-type ATPase; unk 99.6 1.4E-14 4.6E-19 159.5 22.3 296 5-335 7-349 (350)
79 2xwt_C Thyrotropin receptor; s 99.6 4.5E-15 1.5E-19 153.2 15.8 199 353-561 23-234 (239)
80 3m19_A Variable lymphocyte rec 99.6 1.5E-14 5.2E-19 150.4 18.4 173 364-543 15-191 (251)
81 1h6u_A Internalin H; cell adhe 99.6 1.5E-14 5.3E-19 155.1 18.0 181 353-547 53-233 (308)
82 3rfs_A Internalin B, repeat mo 99.6 9.8E-15 3.4E-19 153.8 16.1 173 361-542 39-216 (272)
83 1h6t_A Internalin B; cell adhe 99.6 7.9E-15 2.7E-19 155.9 15.4 171 360-544 43-213 (291)
84 2z62_A TOLL-like receptor 4, v 99.6 7.4E-15 2.5E-19 155.4 15.0 172 367-546 11-192 (276)
85 3rfs_A Internalin B, repeat mo 99.6 1.5E-14 5.1E-19 152.4 17.1 160 353-514 53-217 (272)
86 2xwt_C Thyrotropin receptor; s 99.6 9.5E-15 3.3E-19 150.8 14.8 136 374-513 22-167 (239)
87 2fna_A Conserved hypothetical 99.6 3.6E-14 1.2E-18 156.6 20.4 292 6-334 9-356 (357)
88 1p9a_G Platelet glycoprotein I 99.6 2.4E-14 8.3E-19 151.9 17.0 171 381-560 6-179 (290)
89 3oja_A Leucine-rich immune mol 99.6 1E-14 3.5E-19 166.9 14.9 150 383-544 32-182 (487)
90 3m19_A Variable lymphocyte rec 99.5 1.1E-13 3.8E-18 143.9 18.1 153 361-515 33-192 (251)
91 1w5s_A Origin recognition comp 99.5 1.8E-13 6.1E-18 154.2 20.7 303 8-330 20-387 (412)
92 1h6t_A Internalin B; cell adhe 99.5 6.8E-14 2.3E-18 148.6 15.7 185 367-565 28-212 (291)
93 1m9s_A Internalin B; cell inva 99.5 5.2E-14 1.8E-18 164.1 15.0 174 359-546 39-212 (605)
94 3oja_A Leucine-rich immune mol 99.5 4.3E-14 1.5E-18 161.8 13.8 170 361-544 32-204 (487)
95 1wwl_A Monocyte differentiatio 99.5 1.3E-14 4.6E-19 156.2 8.8 81 408-488 94-184 (312)
96 4ay9_X Follicle-stimulating ho 99.5 1E-13 3.5E-18 151.9 16.0 146 366-512 12-164 (350)
97 4ezg_A Putative uncharacterize 99.5 5.9E-14 2E-18 139.8 12.4 148 360-513 41-192 (197)
98 1wwl_A Monocyte differentiatio 99.5 7.3E-14 2.5E-18 150.4 13.6 191 362-561 94-304 (312)
99 3e6j_A Variable lymphocyte rec 99.5 2.4E-13 8.1E-18 138.9 16.5 149 364-515 20-172 (229)
100 2v9t_B SLIT homolog 2 protein 99.5 2.2E-13 7.5E-18 138.1 15.2 147 366-514 14-164 (220)
101 2o6s_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 135.5 15.4 163 366-543 10-177 (208)
102 1xeu_A Internalin C; cellular 99.5 3.2E-13 1.1E-17 141.0 14.2 146 360-513 38-183 (263)
103 4glp_A Monocyte differentiatio 99.5 2.1E-13 7E-18 146.8 12.7 192 363-563 91-304 (310)
104 1m9s_A Internalin B; cell inva 99.5 8.9E-14 3E-18 162.2 10.5 188 364-565 22-209 (605)
105 2ast_B S-phase kinase-associat 99.5 6.4E-14 2.2E-18 153.1 8.6 145 388-541 50-205 (336)
106 1xeu_A Internalin C; cellular 99.5 1.1E-13 3.7E-18 144.6 9.9 169 361-544 17-185 (263)
107 4ezg_A Putative uncharacterize 99.5 3.2E-13 1.1E-17 134.5 12.6 150 382-543 41-193 (197)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 6.3E-13 2.1E-17 134.7 14.8 148 366-515 14-166 (220)
109 2ast_B S-phase kinase-associat 99.4 8.4E-14 2.9E-18 152.1 6.9 175 363-542 70-258 (336)
110 4glp_A Monocyte differentiatio 99.4 3.3E-13 1.1E-17 145.2 11.1 180 365-547 66-267 (310)
111 2qby_B CDC6 homolog 3, cell di 99.4 3.5E-11 1.2E-15 133.9 26.2 287 9-318 19-338 (384)
112 2xot_A Amphoterin-induced prot 99.4 1.5E-12 5.3E-17 143.1 14.5 170 366-542 21-200 (361)
113 4ay9_X Follicle-stimulating ho 99.4 3.5E-12 1.2E-16 139.7 16.4 161 352-513 20-213 (350)
114 2xot_A Amphoterin-induced prot 99.4 2.3E-12 7.9E-17 141.7 13.6 160 353-515 30-202 (361)
115 2ca6_A RAN GTPase-activating p 99.4 7.1E-14 2.4E-18 155.8 1.1 159 383-542 30-227 (386)
116 2v1u_A Cell division control p 99.4 4.3E-11 1.5E-15 133.4 23.8 289 8-318 17-350 (387)
117 2v70_A SLIT-2, SLIT homolog 2 99.3 6.7E-12 2.3E-16 127.1 14.4 130 361-490 30-166 (220)
118 2o6s_A Variable lymphocyte rec 99.3 1.3E-11 4.3E-16 124.2 15.6 146 361-515 26-178 (208)
119 2ca6_A RAN GTPase-activating p 99.3 4.7E-13 1.6E-17 149.1 5.5 182 361-543 30-256 (386)
120 2v9t_B SLIT homolog 2 protein 99.3 1.2E-11 4.2E-16 125.1 15.2 135 353-489 23-164 (220)
121 3goz_A Leucine-rich repeat-con 99.3 8.7E-13 3E-17 145.3 6.8 174 368-543 3-208 (362)
122 3cvr_A Invasion plasmid antige 99.3 1.3E-11 4.3E-16 142.2 16.7 177 364-562 60-239 (571)
123 3e6j_A Variable lymphocyte rec 99.3 1.7E-11 5.8E-16 125.0 15.7 129 361-490 38-172 (229)
124 1fnn_A CDC6P, cell division co 99.3 1.6E-10 5.5E-15 128.9 25.2 291 8-318 15-350 (389)
125 2ell_A Acidic leucine-rich nuc 99.3 4.9E-12 1.7E-16 122.3 10.9 123 363-487 24-157 (168)
126 3goz_A Leucine-rich repeat-con 99.3 8.5E-13 2.9E-17 145.4 5.0 182 362-545 21-239 (362)
127 2je0_A Acidic leucine-rich nuc 99.3 7.6E-12 2.6E-16 118.2 10.0 121 386-509 18-147 (149)
128 2qby_A CDC6 homolog 1, cell di 99.3 2.5E-11 8.4E-16 135.4 15.3 200 8-207 18-243 (386)
129 3cvr_A Invasion plasmid antige 99.3 5.3E-11 1.8E-15 137.0 17.9 158 362-544 79-243 (571)
130 1a9n_A U2A', U2A'; complex (nu 99.3 5.9E-12 2E-16 122.7 8.0 133 377-512 11-150 (176)
131 2chg_A Replication factor C sm 99.3 6.3E-11 2.2E-15 120.8 15.9 188 5-208 12-203 (226)
132 2ell_A Acidic leucine-rich nuc 99.3 3.3E-11 1.1E-15 116.4 12.7 126 384-512 23-157 (168)
133 1njg_A DNA polymerase III subu 99.3 6E-11 2.1E-15 123.0 15.5 199 6-212 19-231 (250)
134 2je0_A Acidic leucine-rich nuc 99.2 1.6E-11 5.5E-16 115.9 9.9 121 363-485 17-148 (149)
135 1dce_A Protein (RAB geranylger 99.2 1.1E-13 3.6E-18 160.6 -7.1 192 361-559 347-566 (567)
136 1w8a_A SLIT protein; signaling 99.2 4.5E-11 1.5E-15 118.1 12.6 123 366-489 11-138 (192)
137 1a9n_A U2A', U2A'; complex (nu 99.2 1.4E-11 4.6E-16 120.1 8.6 127 360-488 16-151 (176)
138 2wfh_A SLIT homolog 2 protein 99.2 8.1E-11 2.8E-15 116.2 13.8 118 367-486 14-135 (193)
139 2wfh_A SLIT homolog 2 protein 99.2 1.2E-10 3.9E-15 115.1 13.0 123 388-514 13-138 (193)
140 2o6r_A Variable lymphocyte rec 99.2 1.7E-10 5.9E-15 112.4 13.7 121 366-488 10-135 (177)
141 1w8a_A SLIT protein; signaling 99.1 2.1E-10 7.1E-15 113.3 11.8 123 388-515 11-139 (192)
142 4b8c_D Glucose-repressible alc 99.1 9.4E-11 3.2E-15 140.4 9.5 150 363-515 173-329 (727)
143 1dce_A Protein (RAB geranylger 99.1 3.3E-10 1.1E-14 131.3 12.9 119 386-508 442-566 (567)
144 2o6r_A Variable lymphocyte rec 99.1 8.7E-10 3E-14 107.4 13.4 123 387-514 9-136 (177)
145 1ds9_A Outer arm dynein; leuci 99.0 8.1E-12 2.8E-16 124.4 -3.2 105 381-488 44-151 (198)
146 1sxj_B Activator 1 37 kDa subu 99.0 1.1E-09 3.6E-14 118.6 12.7 191 6-211 17-212 (323)
147 4b8c_D Glucose-repressible alc 99.0 3.9E-10 1.3E-14 135.1 8.9 113 381-495 220-334 (727)
148 2r9u_A Variable lymphocyte rec 98.9 3.3E-09 1.1E-13 102.5 11.3 101 366-467 15-118 (174)
149 3te6_A Regulatory protein SIR3 98.9 1.3E-08 4.3E-13 106.8 16.0 169 10-179 20-212 (318)
150 3g39_A Variable lymphocyte rec 98.9 4.5E-09 1.5E-13 101.2 11.3 99 366-466 12-114 (170)
151 1ds9_A Outer arm dynein; leuci 98.9 4.9E-11 1.7E-15 118.6 -3.1 147 386-537 24-180 (198)
152 1iqp_A RFCS; clamp loader, ext 98.9 4E-09 1.4E-13 114.3 11.8 188 5-210 20-213 (327)
153 2r9u_A Variable lymphocyte rec 98.9 5.7E-09 1.9E-13 100.8 10.9 98 388-488 15-116 (174)
154 3sb4_A Hypothetical leucine ri 98.9 5.9E-09 2E-13 112.8 12.2 167 384-559 100-327 (329)
155 3g39_A Variable lymphocyte rec 98.9 7.2E-09 2.5E-13 99.7 10.8 98 387-487 11-112 (170)
156 1hqc_A RUVB; extended AAA-ATPa 98.9 9.9E-09 3.4E-13 110.9 12.5 180 4-213 6-215 (324)
157 2chq_A Replication factor C sm 98.8 2.7E-08 9.2E-13 107.3 14.1 186 5-208 12-203 (319)
158 1jr3_A DNA polymerase III subu 98.8 5.5E-08 1.9E-12 107.4 14.8 197 5-209 11-221 (373)
159 1jbk_A CLPB protein; beta barr 98.7 2.7E-08 9.2E-13 98.4 9.1 156 5-174 17-194 (195)
160 3sb4_A Hypothetical leucine ri 98.6 6.9E-08 2.4E-12 104.4 10.1 168 362-538 100-328 (329)
161 3h4m_A Proteasome-activating n 98.6 4.3E-07 1.5E-11 95.9 15.6 181 6-208 13-230 (285)
162 3pvs_A Replication-associated 98.6 5.1E-07 1.7E-11 100.5 15.7 179 4-208 20-214 (447)
163 1d2n_A N-ethylmaleimide-sensit 98.6 1.3E-06 4.6E-11 91.2 17.9 200 9-234 32-267 (272)
164 3bos_A Putative DNA replicatio 98.6 5.8E-08 2E-12 99.8 7.3 174 7-208 25-216 (242)
165 1sxj_D Activator 1 41 kDa subu 98.6 2.5E-07 8.4E-12 101.3 12.2 196 5-207 32-233 (353)
166 2qz4_A Paraplegin; AAA+, SPG7, 98.5 1.8E-06 6.2E-11 89.8 17.8 184 7-210 3-223 (262)
167 1sxj_A Activator 1 95 kDa subu 98.5 2.2E-07 7.7E-12 106.4 10.4 195 5-211 34-255 (516)
168 1xwi_A SKD1 protein; VPS4B, AA 98.5 6.7E-06 2.3E-10 87.7 20.7 186 5-210 7-224 (322)
169 2ifg_A High affinity nerve gro 98.5 3.1E-07 1.1E-11 100.2 10.5 100 367-467 12-116 (347)
170 4fdw_A Leucine rich hypothetic 98.5 2.6E-06 9E-11 93.9 16.9 142 365-510 159-331 (401)
171 3eie_A Vacuolar protein sortin 98.4 3.7E-06 1.3E-10 90.0 17.2 185 5-210 13-229 (322)
172 3pfi_A Holliday junction ATP-d 98.4 4.2E-06 1.4E-10 90.6 17.7 177 4-209 23-227 (338)
173 3d8b_A Fidgetin-like protein 1 98.4 4.4E-06 1.5E-10 90.8 17.6 185 5-210 79-296 (357)
174 1sxj_E Activator 1 40 kDa subu 98.4 3E-07 1E-11 100.5 8.2 197 5-208 9-236 (354)
175 4fdw_A Leucine rich hypothetic 98.4 9.2E-06 3.2E-10 89.6 19.7 143 386-541 136-281 (401)
176 3un9_A NLR family member X1; l 98.4 3.7E-08 1.3E-12 107.7 0.2 152 362-514 71-251 (372)
177 3u61_B DNA polymerase accessor 98.4 2E-06 6.7E-11 92.6 13.5 185 5-211 21-219 (324)
178 2z4s_A Chromosomal replication 98.4 1.1E-06 3.8E-11 98.1 11.7 185 8-208 103-305 (440)
179 4fs7_A Uncharacterized protein 98.4 1.4E-05 4.9E-10 88.5 20.6 131 375-511 59-194 (394)
180 2ifg_A High affinity nerve gro 98.4 6.3E-07 2.1E-11 97.7 9.2 89 423-514 23-115 (347)
181 3un9_A NLR family member X1; l 98.4 4.5E-08 1.6E-12 107.0 -0.2 158 384-544 71-252 (372)
182 1sxj_C Activator 1 40 kDa subu 98.4 2.8E-06 9.6E-11 92.0 13.8 184 5-204 20-207 (340)
183 3syl_A Protein CBBX; photosynt 98.3 1.7E-06 5.9E-11 92.4 11.6 149 11-179 32-218 (309)
184 1a5t_A Delta prime, HOLB; zinc 98.3 8.1E-06 2.8E-10 87.8 16.5 170 14-207 6-203 (334)
185 3vfd_A Spastin; ATPase, microt 98.3 1.3E-05 4.5E-10 88.3 18.4 184 6-210 111-327 (389)
186 2qp9_X Vacuolar protein sortin 98.3 4.8E-06 1.6E-10 90.3 14.3 184 6-210 47-262 (355)
187 3cf0_A Transitional endoplasmi 98.3 8.1E-06 2.8E-10 86.4 15.7 178 5-204 10-223 (301)
188 3uk6_A RUVB-like 2; hexameric 98.3 5.5E-06 1.9E-10 91.0 15.0 196 5-208 38-302 (368)
189 2p65_A Hypothetical protein PF 98.3 1.3E-06 4.5E-11 85.5 8.8 52 5-56 17-68 (187)
190 3b9p_A CG5977-PA, isoform A; A 98.3 2.7E-05 9.2E-10 82.5 19.2 184 6-210 17-234 (297)
191 4b4t_J 26S protease regulatory 98.3 1.6E-05 5.4E-10 85.4 16.7 172 8-201 146-353 (405)
192 3pxg_A Negative regulator of g 98.3 4.8E-06 1.6E-10 93.8 13.5 152 6-179 176-339 (468)
193 2zan_A Vacuolar protein sortin 98.3 1.8E-05 6.1E-10 88.5 17.8 185 6-210 130-346 (444)
194 4fs7_A Uncharacterized protein 98.2 2.6E-05 9E-10 86.3 18.8 149 359-512 67-218 (394)
195 3e4g_A ATP synthase subunit S, 98.2 3.6E-07 1.2E-11 86.1 2.6 93 839-939 62-154 (176)
196 1l8q_A Chromosomal replication 98.2 6.3E-06 2.1E-10 88.6 12.4 178 8-206 9-205 (324)
197 1qvr_A CLPB protein; coiled co 98.2 6.6E-06 2.3E-10 100.4 12.4 159 6-178 166-345 (854)
198 3e4g_A ATP synthase subunit S, 98.1 1.6E-06 5.5E-11 81.7 5.1 39 839-878 115-153 (176)
199 4b4t_L 26S protease subunit RP 98.1 3.1E-05 1.1E-09 84.6 16.0 172 8-201 179-386 (437)
200 4b4t_H 26S protease regulatory 98.1 5.8E-05 2E-09 82.1 16.5 172 8-201 207-414 (467)
201 4b4t_M 26S protease regulatory 98.1 2.9E-05 9.7E-10 84.9 13.9 181 6-208 177-394 (434)
202 4b4t_I 26S protease regulatory 98.0 8.4E-05 2.9E-09 80.0 16.6 172 8-201 180-387 (437)
203 2ra8_A Uncharacterized protein 98.0 4.8E-06 1.6E-10 90.0 6.9 137 403-542 166-318 (362)
204 1r6b_X CLPA protein; AAA+, N-t 98.0 5.4E-05 1.8E-09 91.5 16.6 159 6-178 182-362 (758)
205 2gno_A DNA polymerase III, gam 98.0 2.4E-05 8.1E-10 82.3 11.2 147 14-178 1-152 (305)
206 3hu3_A Transitional endoplasmi 98.0 9.9E-05 3.4E-09 82.9 16.7 178 9-208 203-414 (489)
207 4b4t_K 26S protease regulatory 98.0 6.8E-05 2.3E-09 81.8 14.5 172 8-201 170-378 (428)
208 3n70_A Transport activator; si 97.9 2.8E-06 9.7E-11 78.9 2.6 46 11-56 2-49 (145)
209 3pxi_A Negative regulator of g 97.9 3.9E-05 1.3E-09 92.5 13.2 151 7-179 177-339 (758)
210 1lv7_A FTSH; alpha/beta domain 97.9 0.0002 6.8E-09 73.8 16.5 182 5-208 7-224 (257)
211 2ce7_A Cell division protein F 97.9 0.0002 6.9E-09 79.6 16.2 173 8-202 14-221 (476)
212 4fcw_A Chaperone protein CLPB; 97.8 4.8E-05 1.6E-09 81.2 10.7 106 10-122 17-131 (311)
213 2r62_A Cell division protease 97.8 1.1E-05 3.7E-10 84.1 4.3 176 6-203 7-219 (268)
214 3ec2_A DNA replication protein 97.8 2.8E-05 9.5E-10 75.3 6.9 125 7-148 7-143 (180)
215 1ofh_A ATP-dependent HSL prote 97.8 9.3E-05 3.2E-09 78.9 11.4 48 9-56 14-75 (310)
216 1in4_A RUVB, holliday junction 97.8 0.00045 1.5E-08 74.1 16.5 177 3-208 18-222 (334)
217 2ra8_A Uncharacterized protein 97.7 2.4E-05 8.1E-10 84.6 6.2 58 453-512 251-317 (362)
218 4gt6_A Cell surface protein; l 97.6 0.0022 7.6E-08 70.6 20.1 110 399-511 53-169 (394)
219 2w58_A DNAI, primosome compone 97.6 0.00018 6.2E-09 71.0 10.0 63 6-70 21-91 (202)
220 1ojl_A Transcriptional regulat 97.6 0.00015 5.2E-09 76.4 9.3 46 10-55 2-49 (304)
221 2bjv_A PSP operon transcriptio 97.6 5.1E-05 1.8E-09 78.7 5.5 63 8-72 4-68 (265)
222 1io0_A Tropomodulin; LRR prote 97.6 5E-05 1.7E-09 73.7 4.8 16 383-398 34-50 (185)
223 3pxi_A Negative regulator of g 97.6 8.5E-05 2.9E-09 89.5 7.7 146 10-178 491-675 (758)
224 3rw6_A Nuclear RNA export fact 97.5 1.8E-05 6.3E-10 80.7 1.2 60 408-467 169-233 (267)
225 1iy2_A ATP-dependent metallopr 97.5 0.0016 5.3E-08 67.9 15.5 179 6-206 36-250 (278)
226 4gt6_A Cell surface protein; l 97.5 0.003 1E-07 69.6 18.5 32 688-722 310-341 (394)
227 2c9o_A RUVB-like 1; hexameric 97.5 0.00063 2.2E-08 76.4 12.8 48 9-56 36-88 (456)
228 3rw6_A Nuclear RNA export fact 97.4 0.00014 4.8E-09 74.2 6.6 79 429-508 167-257 (267)
229 3cf2_A TER ATPase, transitiona 97.4 0.00033 1.1E-08 82.5 10.4 176 10-207 204-413 (806)
230 1ixz_A ATP-dependent metallopr 97.4 0.0034 1.2E-07 64.3 16.9 174 7-202 13-221 (254)
231 2dhr_A FTSH; AAA+ protein, hex 97.4 0.0015 5.2E-08 73.1 14.8 179 6-206 27-241 (499)
232 2x8a_A Nuclear valosin-contain 97.4 0.003 1E-07 65.2 16.2 156 5-180 5-193 (274)
233 2kjq_A DNAA-related protein; s 97.3 7.3E-05 2.5E-09 69.3 2.4 40 30-71 35-74 (149)
234 3co5_A Putative two-component 97.3 2.6E-05 9E-10 72.0 -0.8 46 10-55 4-51 (143)
235 1io0_A Tropomodulin; LRR prote 97.2 0.00019 6.5E-09 69.6 4.4 82 403-484 30-128 (185)
236 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0006 2.1E-08 82.3 9.5 103 10-122 458-569 (758)
237 3m6a_A ATP-dependent protease 97.2 0.0015 5.1E-08 74.8 11.7 152 12-178 83-266 (543)
238 3t15_A Ribulose bisphosphate c 97.2 0.0018 6E-08 67.9 11.2 26 31-56 36-61 (293)
239 1um8_A ATP-dependent CLP prote 97.1 0.0029 1E-07 69.1 13.2 47 10-56 21-97 (376)
240 1qvr_A CLPB protein; coiled co 97.0 0.0007 2.4E-08 82.5 7.7 59 11-71 559-626 (854)
241 2r44_A Uncharacterized protein 97.0 0.0011 3.8E-08 71.1 8.0 48 7-56 24-71 (331)
242 1ypw_A Transitional endoplasmi 96.9 0.0021 7.1E-08 77.3 10.1 172 8-202 202-407 (806)
243 3io5_A Recombination and repai 96.9 0.0047 1.6E-07 63.5 11.1 86 32-122 29-123 (333)
244 2qgz_A Helicase loader, putati 96.8 0.0021 7.2E-08 67.7 7.6 62 7-70 121-190 (308)
245 2cvh_A DNA repair and recombin 96.7 0.0085 2.9E-07 59.7 10.9 44 31-79 20-63 (220)
246 3cf2_A TER ATPase, transitiona 96.6 0.0014 4.9E-08 77.2 5.8 171 9-201 476-682 (806)
247 3hr8_A Protein RECA; alpha and 96.6 0.0088 3E-07 63.6 10.7 85 31-122 61-151 (356)
248 1n0w_A DNA repair protein RAD5 96.6 0.012 4E-07 59.7 11.4 90 31-121 24-130 (243)
249 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0041 1.4E-07 64.3 6.8 71 32-122 124-194 (331)
250 1v5w_A DMC1, meiotic recombina 96.4 0.015 5.1E-07 62.2 11.6 58 31-89 122-183 (343)
251 2z43_A DNA repair and recombin 96.4 0.01 3.5E-07 63.0 10.3 90 31-121 107-214 (324)
252 2zr9_A Protein RECA, recombina 96.2 0.013 4.6E-07 62.5 9.7 84 31-121 61-150 (349)
253 2b8t_A Thymidine kinase; deoxy 96.2 0.0015 5E-08 64.6 1.8 111 31-150 12-128 (223)
254 3lda_A DNA repair protein RAD5 96.1 0.017 5.7E-07 62.8 9.8 88 31-119 178-282 (400)
255 1jr3_D DNA polymerase III, del 96.1 0.041 1.4E-06 59.0 12.9 156 30-207 17-183 (343)
256 1u94_A RECA protein, recombina 96.1 0.016 5.6E-07 61.8 9.5 84 31-121 63-152 (356)
257 1xp8_A RECA protein, recombina 96.0 0.021 7E-07 61.3 10.0 84 31-121 74-163 (366)
258 4h09_A Hypothetical leucine ri 96.0 0.05 1.7E-06 59.3 13.4 125 382-510 214-341 (379)
259 2i1q_A DNA repair and recombin 96.0 0.026 8.8E-07 60.0 10.6 58 31-89 98-169 (322)
260 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.019 6.3E-07 57.8 8.8 46 31-80 23-68 (235)
261 2px0_A Flagellar biosynthesis 95.9 0.02 7E-07 59.5 8.9 87 30-119 104-191 (296)
262 1rz3_A Hypothetical protein rb 95.8 0.0099 3.4E-07 58.2 6.0 43 14-56 2-47 (201)
263 4a74_A DNA repair and recombin 95.8 0.043 1.5E-06 54.9 10.8 57 31-88 25-85 (231)
264 3c8u_A Fructokinase; YP_612366 95.7 0.011 3.9E-07 58.2 5.8 54 15-70 4-59 (208)
265 4h09_A Hypothetical leucine ri 95.5 0.045 1.5E-06 59.7 10.6 129 402-539 210-341 (379)
266 3dm5_A SRP54, signal recogniti 95.5 0.071 2.4E-06 58.2 11.7 38 31-70 100-137 (443)
267 3tqc_A Pantothenate kinase; bi 95.5 0.062 2.1E-06 56.2 10.7 59 13-71 70-132 (321)
268 1vma_A Cell division protein F 95.5 0.11 3.6E-06 54.2 12.4 102 16-120 81-196 (306)
269 1g5t_A COB(I)alamin adenosyltr 95.4 0.023 7.8E-07 54.2 6.5 111 32-148 29-163 (196)
270 1pzn_A RAD51, DNA repair and r 95.4 0.045 1.5E-06 58.5 9.6 57 31-88 131-191 (349)
271 2orw_A Thymidine kinase; TMTK, 95.3 0.0017 5.8E-08 62.5 -1.6 109 32-148 4-113 (184)
272 3ice_A Transcription terminati 95.2 0.026 8.7E-07 59.6 6.5 42 30-71 173-214 (422)
273 1g8p_A Magnesium-chelatase 38 95.1 0.0081 2.8E-07 64.9 2.9 51 6-56 20-70 (350)
274 2xxa_A Signal recognition part 95.1 0.16 5.4E-06 55.8 13.1 72 17-89 77-158 (433)
275 2yvu_A Probable adenylyl-sulfa 95.0 0.024 8.1E-07 54.7 5.6 30 28-57 10-39 (186)
276 3kl4_A SRP54, signal recogniti 95.0 0.093 3.2E-06 57.3 10.7 57 31-89 97-154 (433)
277 3nbx_X ATPase RAVA; AAA+ ATPas 95.0 0.01 3.5E-07 66.5 3.1 46 9-56 21-66 (500)
278 2dr3_A UPF0273 protein PH0284; 94.8 0.065 2.2E-06 54.2 8.6 38 32-71 24-61 (247)
279 1qhx_A CPT, protein (chloramph 94.8 0.016 5.3E-07 55.5 3.6 25 32-56 4-28 (178)
280 1j8m_F SRP54, signal recogniti 94.8 0.14 4.8E-06 53.1 11.0 88 31-120 98-190 (297)
281 3bh0_A DNAB-like replicative h 94.8 0.16 5.6E-06 53.3 11.7 51 31-85 68-118 (315)
282 1sky_E F1-ATPase, F1-ATP synth 94.8 0.063 2.2E-06 58.7 8.6 89 32-121 152-256 (473)
283 3kb2_A SPBC2 prophage-derived 94.8 0.017 5.9E-07 54.8 3.7 25 32-56 2-26 (173)
284 3hws_A ATP-dependent CLP prote 94.7 0.022 7.6E-07 61.7 5.0 46 11-56 16-76 (363)
285 3cmu_A Protein RECA, recombina 94.7 0.054 1.8E-06 69.8 8.9 83 31-120 1427-1515(2050)
286 2ehv_A Hypothetical protein PH 94.6 0.08 2.7E-06 53.7 8.6 24 31-54 30-53 (251)
287 1ex7_A Guanylate kinase; subst 94.6 0.014 4.6E-07 55.9 2.4 25 32-56 2-26 (186)
288 3uie_A Adenylyl-sulfate kinase 94.6 0.029 1E-06 54.7 4.9 28 29-56 23-50 (200)
289 3e70_C DPA, signal recognition 94.6 0.21 7.1E-06 52.6 11.7 57 30-88 128-185 (328)
290 3vaa_A Shikimate kinase, SK; s 94.5 0.022 7.5E-07 55.6 3.9 26 31-56 25-50 (199)
291 1kgd_A CASK, peripheral plasma 94.5 0.021 7.2E-07 54.7 3.6 25 32-56 6-30 (180)
292 2ffh_A Protein (FFH); SRP54, s 94.5 0.25 8.5E-06 53.8 12.4 56 31-89 98-155 (425)
293 4eun_A Thermoresistant glucoki 94.5 0.023 8E-07 55.4 3.9 26 30-55 28-53 (200)
294 3aez_A Pantothenate kinase; tr 94.4 0.073 2.5E-06 55.7 7.8 44 29-72 88-131 (312)
295 1zp6_A Hypothetical protein AT 94.3 0.025 8.5E-07 54.8 3.8 24 31-54 9-32 (191)
296 3trf_A Shikimate kinase, SK; a 94.3 0.025 8.6E-07 54.4 3.7 26 31-56 5-30 (185)
297 1ls1_A Signal recognition part 94.3 0.14 4.8E-06 53.2 9.6 87 31-119 98-189 (295)
298 3sr0_A Adenylate kinase; phosp 94.3 0.057 2E-06 52.6 6.1 24 33-56 2-25 (206)
299 1kag_A SKI, shikimate kinase I 94.2 0.021 7.3E-07 54.2 3.0 25 32-56 5-29 (173)
300 2j37_W Signal recognition part 94.2 0.36 1.2E-05 53.8 13.3 39 30-70 100-138 (504)
301 3tau_A Guanylate kinase, GMP k 94.2 0.027 9.4E-07 55.3 3.8 26 31-56 8-33 (208)
302 1odf_A YGR205W, hypothetical 3 94.1 0.059 2E-06 55.8 6.3 55 29-83 29-84 (290)
303 1ly1_A Polynucleotide kinase; 94.1 0.03 1E-06 53.6 3.7 22 32-53 3-24 (181)
304 1nks_A Adenylate kinase; therm 94.1 0.032 1.1E-06 54.0 4.0 25 32-56 2-26 (194)
305 3ney_A 55 kDa erythrocyte memb 94.1 0.034 1.2E-06 53.5 4.0 27 30-56 18-44 (197)
306 1xjc_A MOBB protein homolog; s 94.0 0.053 1.8E-06 50.6 5.1 26 31-56 4-29 (169)
307 3fwy_A Light-independent proto 94.0 0.062 2.1E-06 56.3 6.2 41 29-71 46-86 (314)
308 1ypw_A Transitional endoplasmi 94.0 0.0048 1.7E-07 74.1 -2.6 152 9-180 476-663 (806)
309 2rhm_A Putative kinase; P-loop 94.0 0.038 1.3E-06 53.5 4.2 26 31-56 5-30 (193)
310 1kht_A Adenylate kinase; phosp 93.9 0.033 1.1E-06 53.8 3.8 25 32-56 4-28 (192)
311 2hf9_A Probable hydrogenase ni 93.9 0.054 1.8E-06 54.0 5.5 43 14-56 21-63 (226)
312 3t61_A Gluconokinase; PSI-biol 93.9 0.027 9.2E-07 55.1 3.1 26 31-56 18-43 (202)
313 4a1f_A DNAB helicase, replicat 93.9 0.21 7.3E-06 52.5 10.1 51 31-85 46-96 (338)
314 2ze6_A Isopentenyl transferase 93.9 0.035 1.2E-06 56.4 4.0 25 32-56 2-26 (253)
315 3lw7_A Adenylate kinase relate 93.9 0.031 1.1E-06 53.1 3.5 23 32-55 2-24 (179)
316 3tlx_A Adenylate kinase 2; str 93.9 0.069 2.3E-06 53.9 6.1 43 14-56 10-54 (243)
317 3tr0_A Guanylate kinase, GMP k 93.9 0.034 1.2E-06 54.5 3.8 24 32-55 8-31 (205)
318 3k1j_A LON protease, ATP-depen 93.9 0.023 7.9E-07 66.1 2.9 50 5-56 36-85 (604)
319 3iij_A Coilin-interacting nucl 93.8 0.03 1E-06 53.6 3.2 26 31-56 11-36 (180)
320 3a00_A Guanylate kinase, GMP k 93.8 0.027 9.4E-07 54.2 2.9 25 32-56 2-26 (186)
321 1htw_A HI0065; nucleotide-bind 93.8 0.057 2E-06 50.1 5.0 27 29-55 31-57 (158)
322 1knq_A Gluconate kinase; ALFA/ 93.8 0.045 1.6E-06 52.0 4.4 25 31-55 8-32 (175)
323 2qor_A Guanylate kinase; phosp 93.8 0.031 1E-06 54.8 3.2 26 31-56 12-37 (204)
324 2ga8_A Hypothetical 39.9 kDa p 93.8 0.075 2.6E-06 55.9 6.2 44 13-56 2-49 (359)
325 1zuh_A Shikimate kinase; alpha 93.6 0.042 1.5E-06 51.8 3.8 26 31-56 7-32 (168)
326 2wsm_A Hydrogenase expression/ 93.6 0.057 1.9E-06 53.6 4.9 46 11-56 10-55 (221)
327 1ye8_A Protein THEP1, hypothet 93.6 0.046 1.6E-06 52.0 3.9 24 33-56 2-25 (178)
328 3asz_A Uridine kinase; cytidin 93.6 0.048 1.6E-06 53.7 4.3 27 30-56 5-31 (211)
329 2bdt_A BH3686; alpha-beta prot 93.6 0.042 1.4E-06 53.0 3.8 22 32-53 3-24 (189)
330 2z0h_A DTMP kinase, thymidylat 93.6 0.1 3.5E-06 50.6 6.5 24 33-56 2-25 (197)
331 1via_A Shikimate kinase; struc 93.5 0.041 1.4E-06 52.3 3.6 25 32-56 5-29 (175)
332 1tue_A Replication protein E1; 93.5 0.076 2.6E-06 50.8 5.2 39 18-56 44-83 (212)
333 2j41_A Guanylate kinase; GMP, 93.4 0.045 1.6E-06 53.6 3.8 25 31-55 6-30 (207)
334 1ukz_A Uridylate kinase; trans 93.4 0.051 1.7E-06 53.1 4.1 27 30-56 14-40 (203)
335 2c95_A Adenylate kinase 1; tra 93.4 0.046 1.6E-06 53.0 3.8 26 31-56 9-34 (196)
336 1lvg_A Guanylate kinase, GMP k 93.4 0.036 1.2E-06 54.0 2.9 25 32-56 5-29 (198)
337 3cm0_A Adenylate kinase; ATP-b 93.4 0.055 1.9E-06 52.0 4.2 25 32-56 5-29 (186)
338 1gvn_B Zeta; postsegregational 93.4 0.073 2.5E-06 55.1 5.4 26 30-55 32-57 (287)
339 3rfe_A Platelet glycoprotein I 93.3 0.12 4.1E-06 46.0 6.1 51 367-418 12-64 (130)
340 1y63_A LMAJ004144AAA protein; 93.3 0.054 1.9E-06 51.9 4.1 24 31-54 10-33 (184)
341 1s96_A Guanylate kinase, GMP k 93.3 0.044 1.5E-06 54.1 3.5 26 31-56 16-41 (219)
342 1tev_A UMP-CMP kinase; ploop, 93.3 0.054 1.8E-06 52.5 4.1 25 32-56 4-28 (196)
343 2bwj_A Adenylate kinase 5; pho 93.3 0.049 1.7E-06 53.0 3.7 25 32-56 13-37 (199)
344 2plr_A DTMP kinase, probable t 93.3 0.057 2E-06 53.2 4.2 26 32-57 5-30 (213)
345 4gp7_A Metallophosphoesterase; 93.3 0.043 1.5E-06 51.9 3.2 21 31-51 9-29 (171)
346 1e6c_A Shikimate kinase; phosp 93.3 0.043 1.5E-06 52.0 3.2 25 32-56 3-27 (173)
347 2jaq_A Deoxyguanosine kinase; 93.2 0.051 1.8E-06 53.1 3.8 24 33-56 2-25 (205)
348 2fz4_A DNA repair protein RAD2 93.2 0.29 1E-05 48.9 9.5 42 11-55 91-132 (237)
349 1zu4_A FTSY; GTPase, signal re 93.2 0.15 5.1E-06 53.5 7.5 38 31-70 105-142 (320)
350 2bbw_A Adenylate kinase 4, AK4 93.2 0.049 1.7E-06 55.1 3.8 26 31-56 27-52 (246)
351 2iyv_A Shikimate kinase, SK; t 93.2 0.041 1.4E-06 52.8 3.0 25 32-56 3-27 (184)
352 1sq5_A Pantothenate kinase; P- 93.2 0.25 8.5E-06 51.7 9.3 43 29-71 78-120 (308)
353 3umf_A Adenylate kinase; rossm 93.2 0.062 2.1E-06 52.7 4.3 27 30-56 28-54 (217)
354 1znw_A Guanylate kinase, GMP k 93.2 0.047 1.6E-06 53.6 3.5 25 31-55 20-44 (207)
355 3cmw_A Protein RECA, recombina 93.2 0.17 5.9E-06 64.5 9.1 84 31-121 1431-1520(1706)
356 1cke_A CK, MSSA, protein (cyti 93.2 0.052 1.8E-06 54.1 3.8 25 32-56 6-30 (227)
357 1g41_A Heat shock protein HSLU 93.2 0.048 1.6E-06 59.6 3.7 47 10-56 15-75 (444)
358 1rj9_A FTSY, signal recognitio 93.1 0.087 3E-06 54.9 5.4 28 30-57 101-128 (304)
359 2pbr_A DTMP kinase, thymidylat 93.1 0.14 4.8E-06 49.4 6.7 24 33-56 2-25 (195)
360 3end_A Light-independent proto 93.1 0.11 3.8E-06 54.5 6.4 43 28-72 38-80 (307)
361 2jeo_A Uridine-cytidine kinase 93.0 0.061 2.1E-06 54.4 4.1 26 30-55 24-49 (245)
362 1z6g_A Guanylate kinase; struc 93.0 0.044 1.5E-06 54.2 2.9 25 31-55 23-47 (218)
363 2pt5_A Shikimate kinase, SK; a 93.0 0.063 2.2E-06 50.5 3.9 24 33-56 2-25 (168)
364 1qf9_A UMP/CMP kinase, protein 92.9 0.064 2.2E-06 51.8 4.0 26 31-56 6-31 (194)
365 3l0o_A Transcription terminati 92.9 0.48 1.6E-05 50.1 10.5 49 22-70 165-214 (427)
366 3ld9_A DTMP kinase, thymidylat 92.9 0.15 5E-06 50.2 6.5 39 19-57 9-47 (223)
367 3cmw_A Protein RECA, recombina 92.8 0.22 7.4E-06 63.6 9.4 85 31-122 732-822 (1706)
368 2cdn_A Adenylate kinase; phosp 92.8 0.064 2.2E-06 52.3 3.8 26 31-56 20-45 (201)
369 2if2_A Dephospho-COA kinase; a 92.8 0.057 1.9E-06 52.8 3.4 22 32-53 2-23 (204)
370 4e22_A Cytidylate kinase; P-lo 92.8 0.064 2.2E-06 54.4 3.9 26 31-56 27-52 (252)
371 1uj2_A Uridine-cytidine kinase 92.8 0.069 2.3E-06 54.3 4.1 28 29-56 20-47 (252)
372 2wwf_A Thymidilate kinase, put 92.8 0.067 2.3E-06 52.6 3.9 26 31-56 10-35 (212)
373 1aky_A Adenylate kinase; ATP:A 92.7 0.068 2.3E-06 53.0 3.9 26 31-56 4-29 (220)
374 1uf9_A TT1252 protein; P-loop, 92.7 0.071 2.4E-06 52.0 4.0 25 30-54 7-31 (203)
375 1nn5_A Similar to deoxythymidy 92.7 0.093 3.2E-06 51.7 4.9 26 31-56 9-34 (215)
376 2qt1_A Nicotinamide riboside k 92.7 0.068 2.3E-06 52.4 3.8 25 31-55 21-45 (207)
377 3a4m_A L-seryl-tRNA(SEC) kinas 92.7 0.072 2.5E-06 54.4 4.1 26 31-56 4-29 (260)
378 2f1r_A Molybdopterin-guanine d 92.7 0.061 2.1E-06 50.6 3.2 26 32-57 3-28 (171)
379 3fb4_A Adenylate kinase; psych 92.7 0.069 2.4E-06 52.8 3.8 24 33-56 2-25 (216)
380 1fx0_B ATP synthase beta chain 92.7 0.32 1.1E-05 53.3 9.2 90 31-121 165-277 (498)
381 2vli_A Antibiotic resistance p 92.6 0.045 1.5E-06 52.4 2.3 25 32-56 6-30 (183)
382 2grj_A Dephospho-COA kinase; T 92.6 0.073 2.5E-06 51.2 3.7 26 30-55 11-36 (192)
383 3b85_A Phosphate starvation-in 92.6 0.048 1.6E-06 53.3 2.4 36 13-54 10-45 (208)
384 1m7g_A Adenylylsulfate kinase; 92.6 0.1 3.5E-06 51.3 4.9 28 29-56 23-50 (211)
385 1jjv_A Dephospho-COA kinase; P 92.5 0.069 2.3E-06 52.3 3.6 22 32-53 3-24 (206)
386 1np6_A Molybdopterin-guanine d 92.5 0.12 4.2E-06 48.6 5.1 26 31-56 6-31 (174)
387 3upu_A ATP-dependent DNA helic 92.5 0.25 8.4E-06 55.2 8.4 52 14-67 29-80 (459)
388 3p32_A Probable GTPase RV1496/ 92.4 0.26 8.9E-06 52.8 8.2 48 20-69 66-115 (355)
389 2pez_A Bifunctional 3'-phospho 92.4 0.092 3.1E-06 50.0 4.2 27 31-57 5-31 (179)
390 1gtv_A TMK, thymidylate kinase 92.4 0.046 1.6E-06 54.0 2.1 24 33-56 2-25 (214)
391 1zak_A Adenylate kinase; ATP:A 92.4 0.069 2.3E-06 53.1 3.4 26 31-56 5-30 (222)
392 2og2_A Putative signal recogni 92.4 0.22 7.6E-06 52.9 7.4 27 31-57 157-183 (359)
393 3dl0_A Adenylate kinase; phosp 92.3 0.074 2.5E-06 52.6 3.5 24 33-56 2-25 (216)
394 3iqw_A Tail-anchored protein t 92.3 0.17 5.8E-06 53.4 6.4 47 25-73 10-56 (334)
395 3b9q_A Chloroplast SRP recepto 92.3 0.13 4.3E-06 53.7 5.3 27 31-57 100-126 (302)
396 2p5t_B PEZT; postsegregational 92.3 0.11 3.9E-06 52.6 4.9 26 31-56 32-57 (253)
397 1zd8_A GTP:AMP phosphotransfer 92.3 0.071 2.4E-06 53.2 3.3 25 32-56 8-32 (227)
398 3tif_A Uncharacterized ABC tra 92.2 0.068 2.3E-06 53.5 3.1 24 31-54 31-54 (235)
399 3r20_A Cytidylate kinase; stru 92.2 0.088 3E-06 52.2 3.8 25 32-56 10-34 (233)
400 3d3q_A TRNA delta(2)-isopenten 92.2 0.086 2.9E-06 55.3 3.9 25 32-56 8-32 (340)
401 2r8r_A Sensor protein; KDPD, P 92.2 0.2 6.9E-06 48.9 6.2 37 33-71 8-44 (228)
402 3exa_A TRNA delta(2)-isopenten 92.1 0.081 2.8E-06 54.5 3.5 25 32-56 4-28 (322)
403 2ck3_D ATP synthase subunit be 92.1 0.41 1.4E-05 52.3 9.1 90 31-121 153-264 (482)
404 2j9r_A Thymidine kinase; TK1, 92.1 0.069 2.4E-06 51.7 2.8 111 31-150 28-140 (214)
405 2i3b_A HCR-ntpase, human cance 92.1 0.078 2.7E-06 50.9 3.3 25 32-56 2-26 (189)
406 1q57_A DNA primase/helicase; d 92.0 0.4 1.4E-05 54.2 9.7 56 31-89 242-298 (503)
407 2onk_A Molybdate/tungstate ABC 92.0 0.081 2.8E-06 53.0 3.4 23 32-54 25-47 (240)
408 2r6a_A DNAB helicase, replicat 92.0 0.51 1.7E-05 52.5 10.3 49 31-82 203-251 (454)
409 1cr0_A DNA primase/helicase; R 92.0 0.26 8.7E-06 51.4 7.4 51 31-84 35-85 (296)
410 3cmu_A Protein RECA, recombina 91.9 0.33 1.1E-05 62.7 9.5 84 31-121 383-472 (2050)
411 3gmt_A Adenylate kinase; ssgci 91.9 0.34 1.1E-05 47.7 7.5 25 32-56 9-33 (230)
412 2v54_A DTMP kinase, thymidylat 91.9 0.089 3E-06 51.4 3.5 24 32-55 5-28 (204)
413 3lnc_A Guanylate kinase, GMP k 91.9 0.06 2E-06 53.9 2.2 25 31-55 27-52 (231)
414 3bgw_A DNAB-like replicative h 91.8 0.52 1.8E-05 52.0 9.9 49 31-83 197-245 (444)
415 2yhs_A FTSY, cell division pro 91.8 0.26 9E-06 54.3 7.3 27 30-56 292-318 (503)
416 3foz_A TRNA delta(2)-isopenten 91.8 0.12 4E-06 53.2 4.2 27 30-56 9-35 (316)
417 2pcj_A ABC transporter, lipopr 91.8 0.077 2.6E-06 52.7 2.8 24 31-54 30-53 (224)
418 4edh_A DTMP kinase, thymidylat 91.7 0.32 1.1E-05 47.6 7.3 27 31-57 6-32 (213)
419 3crm_A TRNA delta(2)-isopenten 91.7 0.1 3.5E-06 54.4 3.7 25 32-56 6-30 (323)
420 4eaq_A DTMP kinase, thymidylat 91.7 0.21 7.1E-06 49.7 5.9 27 31-57 26-52 (229)
421 3ake_A Cytidylate kinase; CMP 91.6 0.11 3.8E-06 50.8 3.9 24 33-56 4-27 (208)
422 2xb4_A Adenylate kinase; ATP-b 91.6 0.11 3.8E-06 51.6 3.8 24 33-56 2-25 (223)
423 2cbz_A Multidrug resistance-as 91.6 0.089 3E-06 52.7 3.1 25 31-55 31-55 (237)
424 3nwj_A ATSK2; P loop, shikimat 91.5 0.094 3.2E-06 52.8 3.2 25 32-56 49-73 (250)
425 3io3_A DEHA2D07832P; chaperone 91.5 0.23 7.9E-06 52.7 6.3 49 24-72 11-59 (348)
426 1b0u_A Histidine permease; ABC 91.5 0.091 3.1E-06 53.5 3.1 24 31-54 32-55 (262)
427 1e4v_A Adenylate kinase; trans 91.4 0.11 3.9E-06 51.1 3.7 24 33-56 2-25 (214)
428 3be4_A Adenylate kinase; malar 91.4 0.12 4E-06 51.2 3.7 25 32-56 6-30 (217)
429 2olj_A Amino acid ABC transpor 91.3 0.096 3.3E-06 53.2 3.1 24 31-54 50-73 (263)
430 3a8t_A Adenylate isopentenyltr 91.3 0.092 3.2E-06 54.8 2.9 24 32-55 41-64 (339)
431 1a7j_A Phosphoribulokinase; tr 91.3 0.067 2.3E-06 55.5 1.9 26 31-56 5-30 (290)
432 3jvv_A Twitching mobility prot 91.2 1.2 4.2E-05 47.2 11.7 111 32-151 124-234 (356)
433 1ak2_A Adenylate kinase isoenz 91.2 0.14 4.7E-06 51.3 4.1 26 31-56 16-41 (233)
434 1vht_A Dephospho-COA kinase; s 91.2 0.13 4.5E-06 50.8 3.9 22 32-53 5-26 (218)
435 2f6r_A COA synthase, bifunctio 91.2 0.13 4.3E-06 53.2 3.9 22 31-52 75-96 (281)
436 2zu0_C Probable ATP-dependent 91.2 0.12 4E-06 52.9 3.6 24 31-54 46-69 (267)
437 1mv5_A LMRA, multidrug resista 91.2 0.11 3.8E-06 52.3 3.3 24 31-54 28-51 (243)
438 2qmh_A HPR kinase/phosphorylas 91.1 0.093 3.2E-06 49.9 2.5 25 31-55 34-58 (205)
439 3b5x_A Lipid A export ATP-bind 91.1 0.54 1.8E-05 54.2 9.5 25 31-55 369-393 (582)
440 3gfo_A Cobalt import ATP-bindi 91.1 0.097 3.3E-06 53.6 2.8 24 31-54 34-57 (275)
441 1cp2_A CP2, nitrogenase iron p 91.1 0.27 9.1E-06 50.4 6.3 39 32-72 2-40 (269)
442 3llm_A ATP-dependent RNA helic 91.1 0.5 1.7E-05 47.2 8.1 23 32-54 77-99 (235)
443 4g1u_C Hemin import ATP-bindin 91.1 0.1 3.4E-06 53.3 2.9 25 31-55 37-61 (266)
444 1vpl_A ABC transporter, ATP-bi 91.0 0.11 3.6E-06 52.7 3.1 24 31-54 41-64 (256)
445 2afh_E Nitrogenase iron protei 91.0 0.25 8.7E-06 51.2 6.1 40 31-72 2-41 (289)
446 2d2e_A SUFC protein; ABC-ATPas 91.0 0.12 4.1E-06 52.2 3.5 24 31-54 29-52 (250)
447 1sgw_A Putative ABC transporte 91.0 0.087 3E-06 51.6 2.3 23 32-54 36-58 (214)
448 2q6t_A DNAB replication FORK h 91.0 1 3.5E-05 49.9 11.3 51 31-84 200-250 (444)
449 1ji0_A ABC transporter; ATP bi 90.9 0.11 3.6E-06 52.3 2.9 24 31-54 32-55 (240)
450 2eyu_A Twitching motility prot 90.9 0.15 5E-06 51.9 4.0 27 30-56 24-50 (261)
451 1u0j_A DNA replication protein 90.9 0.26 8.8E-06 49.6 5.6 36 20-55 91-128 (267)
452 2pze_A Cystic fibrosis transme 90.9 0.11 3.7E-06 51.7 2.9 25 31-55 34-58 (229)
453 1g6h_A High-affinity branched- 90.8 0.11 3.7E-06 52.8 2.9 24 31-54 33-56 (257)
454 2ghi_A Transport protein; mult 90.8 0.11 3.9E-06 52.7 3.1 24 31-54 46-69 (260)
455 2ff7_A Alpha-hemolysin translo 90.8 0.11 3.8E-06 52.3 2.9 25 31-55 35-59 (247)
456 1pgv_A TMD-1, tropomodulin TMD 90.7 0.18 6E-06 48.3 4.1 57 431-487 69-136 (197)
457 4gzl_A RAS-related C3 botulinu 90.7 0.15 5.1E-06 49.8 3.7 45 11-55 10-54 (204)
458 1nlf_A Regulatory protein REPA 90.7 0.23 7.9E-06 51.2 5.3 42 31-72 30-79 (279)
459 2ixe_A Antigen peptide transpo 90.7 0.12 4.1E-06 52.9 3.1 24 31-54 45-68 (271)
460 3eph_A TRNA isopentenyltransfe 90.6 0.15 5.2E-06 54.5 3.9 25 32-56 3-27 (409)
461 2v9p_A Replication protein E1; 90.6 0.14 4.9E-06 53.0 3.6 26 30-55 125-150 (305)
462 2yz2_A Putative ABC transporte 90.6 0.12 4.2E-06 52.7 3.1 24 31-54 33-56 (266)
463 4tmk_A Protein (thymidylate ki 90.6 0.41 1.4E-05 46.8 6.7 27 32-58 4-30 (213)
464 2orv_A Thymidine kinase; TP4A 90.6 0.24 8E-06 48.5 4.8 107 31-149 19-127 (234)
465 2qi9_C Vitamin B12 import ATP- 90.5 0.12 4.2E-06 52.0 2.9 25 31-55 26-50 (249)
466 3vr4_D V-type sodium ATPase su 90.5 0.25 8.4E-06 53.6 5.4 90 31-120 151-258 (465)
467 2nq2_C Hypothetical ABC transp 90.3 0.13 4.4E-06 52.1 2.9 25 31-55 31-55 (253)
468 2c61_A A-type ATP synthase non 90.3 0.25 8.4E-06 54.0 5.2 89 31-119 152-258 (469)
469 3hjn_A DTMP kinase, thymidylat 90.3 0.45 1.6E-05 45.9 6.7 49 33-83 2-50 (197)
470 3lv8_A DTMP kinase, thymidylat 90.3 0.42 1.4E-05 47.5 6.5 36 31-67 27-62 (236)
471 3zvl_A Bifunctional polynucleo 90.2 0.22 7.4E-06 54.7 4.9 26 30-55 257-282 (416)
472 2ihy_A ABC transporter, ATP-bi 90.2 0.13 4.5E-06 52.8 2.9 25 31-55 47-71 (279)
473 3rfe_A Platelet glycoprotein I 90.2 0.37 1.3E-05 42.8 5.5 34 478-512 32-65 (130)
474 1pgv_A TMD-1, tropomodulin TMD 89.9 0.21 7.1E-06 47.8 3.8 113 429-542 38-168 (197)
475 3fkq_A NTRC-like two-domain pr 89.9 0.65 2.2E-05 50.1 8.3 42 29-72 141-183 (373)
476 1svm_A Large T antigen; AAA+ f 89.9 0.34 1.2E-05 51.9 5.9 27 29-55 167-193 (377)
477 1ltq_A Polynucleotide kinase; 89.9 0.19 6.4E-06 52.6 3.9 23 32-54 3-25 (301)
478 1oix_A RAS-related protein RAB 89.9 0.18 6.1E-06 48.6 3.4 24 32-55 30-53 (191)
479 3fvq_A Fe(3+) IONS import ATP- 89.8 0.17 5.9E-06 53.6 3.5 25 31-55 30-54 (359)
480 2yv5_A YJEQ protein; hydrolase 89.7 0.26 8.8E-06 51.4 4.7 23 32-55 166-188 (302)
481 1g8f_A Sulfate adenylyltransfe 89.6 0.31 1E-05 54.4 5.4 45 12-56 374-420 (511)
482 3v9p_A DTMP kinase, thymidylat 89.6 0.35 1.2E-05 47.7 5.3 27 31-57 25-51 (227)
483 3cr8_A Sulfate adenylyltranfer 89.6 0.3 1E-05 55.3 5.4 44 13-56 349-394 (552)
484 3gqb_B V-type ATP synthase bet 89.5 0.24 8.2E-06 53.7 4.3 90 31-120 147-261 (464)
485 1p9r_A General secretion pathw 89.5 0.56 1.9E-05 51.1 7.3 35 21-56 158-192 (418)
486 3zq6_A Putative arsenical pump 89.5 0.3 1E-05 51.6 5.1 44 31-76 14-57 (324)
487 1tf7_A KAIC; homohexamer, hexa 89.5 0.45 1.5E-05 54.1 6.9 37 31-69 281-317 (525)
488 3bfv_A CAPA1, CAPB2, membrane 89.4 0.6 2E-05 47.7 7.2 55 16-72 63-122 (271)
489 2v3c_C SRP54, signal recogniti 89.4 0.23 7.7E-06 54.5 4.2 38 31-70 99-136 (432)
490 1q3t_A Cytidylate kinase; nucl 89.4 0.24 8.2E-06 49.6 4.1 26 31-56 16-41 (236)
491 2bbs_A Cystic fibrosis transme 89.3 0.17 5.9E-06 52.1 3.0 25 31-55 64-88 (290)
492 3kjh_A CO dehydrogenase/acetyl 89.2 0.47 1.6E-05 47.9 6.2 40 34-75 3-42 (254)
493 2pjz_A Hypothetical protein ST 89.2 0.17 6E-06 51.3 2.8 23 31-53 30-52 (263)
494 3sop_A Neuronal-specific septi 89.1 0.2 6.8E-06 51.2 3.3 23 33-55 4-26 (270)
495 3nh6_A ATP-binding cassette SU 89.1 0.15 5.3E-06 52.9 2.4 24 31-54 80-103 (306)
496 3tui_C Methionine import ATP-b 89.1 0.22 7.4E-06 52.9 3.6 24 31-54 54-77 (366)
497 1tq4_A IIGP1, interferon-induc 89.1 0.26 8.9E-06 53.5 4.3 23 31-53 69-91 (413)
498 2vp4_A Deoxynucleoside kinase; 89.1 0.17 5.7E-06 50.5 2.6 25 30-54 19-43 (230)
499 3f9v_A Minichromosome maintena 89.0 0.1 3.5E-06 60.1 1.1 47 9-55 294-351 (595)
500 2yyz_A Sugar ABC transporter, 89.0 0.22 7.6E-06 52.9 3.6 24 31-54 29-52 (359)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=6.6e-40 Score=381.41 Aligned_cols=304 Identities=14% Similarity=0.157 Sum_probs=235.1
Q ss_pred hhHHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHH--HhhhccCCCeEEEEEeccCC--CHHHHHHHHHHH
Q 002024 13 ESRKSIVKQLLEALNNE---NVSVIGLCGMGGVGKTTLAKEIGK--QVQESKRYDTVVMAVVSHNL--SIVKIQGEIAAV 85 (979)
Q Consensus 13 vgR~~~l~~l~~~l~~~---~~~~i~i~G~~GiGKT~La~~~~~--~~~~~~~f~~~~~~~~~~~~--~~~~~~~~i~~~ 85 (979)
+||++++++|.++|... +.++|+|+||||+||||||+++|+ +.+.+.+|+.++|++++... +...++..|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999633 579999999999999999999998 45666889999999998875 789999999999
Q ss_pred hCCccc--------ccchHHHHHHHHHHHhcCC-eEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhhccC-
Q 002024 86 LGLTIC--------GIEESARAGYLWERIKMEK-RILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQMD- 155 (979)
Q Consensus 86 l~~~~~--------~~~~~~~~~~~~~~l~~~~-~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~~- 155 (979)
++.... +.+.......+.+.+. ++ |+||||||||+..++ .+. ..+|++||||||+..++..++
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~-~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~ 283 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALI-DRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQ 283 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHT-TSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCS
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHc-CCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCC
Confidence 986521 1112233556666665 64 999999999997754 221 127999999999999987765
Q ss_pred CcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHH-HhhcCCC
Q 002024 156 AQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQ-LKKSTPT 234 (979)
Q Consensus 156 ~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~-l~~~~~~ 234 (979)
....+++++|+.+||+++|.++++.....+...+++.+|+++|+|+||||+++|+.++.+. +.|.+.+.. +....
T Consensus 284 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~--w~~~~~l~~~l~~~~-- 359 (549)
T 2a5y_B 284 TCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT--FEKMAQLNNKLESRG-- 359 (549)
T ss_dssp CEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS--HHHHHHHHHHHHHHC--
T ss_pred CCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch--HHHHHHhHHHhhccc--
Confidence 3468999999999999999999876544467778999999999999999999999987662 333332222 11111
Q ss_pred ccCCchhhhhhhhhhhhccCChhhHHHHHH-----------HHccCCCCccccHHHHHHhheee--eeecccc---cHHH
Q 002024 235 NIEGMHKDVISSLELSYNYLESEEAKKLFL-----------FCCLFPEDYNIKIEVLMRYGMGL--RWFKDVE---TLEE 298 (979)
Q Consensus 235 ~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~-----------~~~~fp~~~~~~~~~l~~~w~~~--g~~~~~~---~~~~ 298 (979)
..++.+++.+||+.||++ ++.||. |||+||+++.|+ ++.|+++ |++.... ..++
T Consensus 360 -----~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~ 429 (549)
T 2a5y_B 360 -----LVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDE 429 (549)
T ss_dssp -----SSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHH
T ss_pred -----HHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHH
Confidence 235788899999999765 999999 999999999999 7889999 8886532 2333
Q ss_pred HHHHHHHHHHHhhhceeEEeC---CcceEEechhHHHHHHHHhhcc
Q 002024 299 ARVRTHAIVSTLISSFLLIAG---DEGYVTMHDVVRDVALVISSKH 341 (979)
Q Consensus 299 ~~~~~~~~l~~L~~~~l~~~~---~~~~~~mh~l~~~~~~~~~~~~ 341 (979)
.+ +++++|++++|++.. ...+|+|||++|+||+.++.++
T Consensus 430 ~~----~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 430 VA----DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp HH----HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred HH----HHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 33 268999999998763 3458999999999999877654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=9.7e-34 Score=329.63 Aligned_cols=282 Identities=18% Similarity=0.161 Sum_probs=220.2
Q ss_pred chhHHHHHHHHHHHhcC-CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCe-EEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 12 FESRKSIVKQLLEALNN-ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDT-VVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~~-~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~-~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
.|||++++++|.++|.. ++.++|+|+||||+||||||++++++.+++.+|+. ++|++++..++...+...+++.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 49999999999999874 55799999999999999999999988766678975 99999999988888888887754321
Q ss_pred c---c---c--cch----HHHHHHHHHHH--hcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhhccC
Q 002024 90 I---C---G--IEE----SARAGYLWERI--KMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCNQMD 155 (979)
Q Consensus 90 ~---~---~--~~~----~~~~~~~~~~l--~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~~~~ 155 (979)
. . + ... ......+.+.+ ..++|+||||||+|+.+.|+.+ .+|++||||||++.++..+.
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~ 282 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLS 282 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHH
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcC
Confidence 1 0 0 011 11223333333 1479999999999998878764 27899999999998875443
Q ss_pred CcceEEcC------CCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCC-ChhHHHHHHHHH
Q 002024 156 AQKIFIVR------TLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRN-NKYVWIDAAQQL 228 (979)
Q Consensus 156 ~~~~~~l~------~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~-~~~~~~~~~~~l 228 (979)
....++++ +|+.+||+++|.+..+.. .+++..++ |+|+||||+++|++++.+. ....|...
T Consensus 283 g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~---- 350 (1221)
T 1vt4_I 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV---- 350 (1221)
T ss_dssp HHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----
T ss_pred CCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----
Confidence 33345555 899999999999986432 22233333 9999999999999999873 34667542
Q ss_pred hhcCCCccCCchhhhhhhhhhhhccCChhhH-HHHHHHHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHHHH
Q 002024 229 KKSTPTNIEGMHKDVISSLELSYNYLESEEA-KKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHAIV 307 (979)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~-~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~~l 307 (979)
....+..+|++||+.||++ . |.||++||+||+++.|+...++.+|+++|. +++..++
T Consensus 351 ----------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-----------edAe~~L 408 (1221)
T 1vt4_I 351 ----------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----------SDVMVVV 408 (1221)
T ss_dssp ----------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-----------HHHHHHH
T ss_pred ----------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-----------HHHHHHH
Confidence 1357899999999999986 7 999999999999999999999999998871 1355678
Q ss_pred HHhhhceeEEeC-CcceEEechhHHHHH
Q 002024 308 STLISSFLLIAG-DEGYVTMHDVVRDVA 334 (979)
Q Consensus 308 ~~L~~~~l~~~~-~~~~~~mh~l~~~~~ 334 (979)
++|+++||++.. ..++|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 999999999874 457899999999855
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.5e-33 Score=359.36 Aligned_cols=312 Identities=21% Similarity=0.290 Sum_probs=246.1
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhh-cc-CCCeEEEEEeccCCC--HHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQE-SK-RYDTVVMAVVSHNLS--IVKI 78 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~-~~-~f~~~~~~~~~~~~~--~~~~ 78 (979)
.|+++..||||++++++|.+.|. ++++++|+|+||||+||||||++++++... .. .++.++|++++...+ ....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 46677889999999999999995 456799999999999999999999987643 33 347889999987533 4455
Q ss_pred HHHHHHHhCCcccc-----cchHHHHHHHHHHHhcCC--eEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhh
Q 002024 79 QGEIAAVLGLTICG-----IEESARAGYLWERIKMEK--RILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVC 151 (979)
Q Consensus 79 ~~~i~~~l~~~~~~-----~~~~~~~~~~~~~l~~~~--~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~ 151 (979)
.+.++..++..... .........+...+ .++ |+||||||+|+..++..+ .+|++||||||++.++
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~ 270 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM-LRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVT 270 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT-SSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH-hccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHH
Confidence 66677777653211 11222333333333 345 999999999998776643 5789999999999888
Q ss_pred hc-cCCcceEEcCC-CCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHHHh
Q 002024 152 NQ-MDAQKIFIVRT-LLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQLK 229 (979)
Q Consensus 152 ~~-~~~~~~~~l~~-L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~ 229 (979)
.. ......+++++ |+.+|++++|...++.. .+...+++.+|+++|+|+||||+++|++++.+. ..|.++++++.
T Consensus 271 ~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~ 346 (1249)
T 3sfz_A 271 DSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQ 346 (1249)
T ss_dssp TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHh
Confidence 43 45668899996 99999999999988533 334556799999999999999999999999876 57999999987
Q ss_pred hcCCCccCC----chhhhhhhhhhhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHH
Q 002024 230 KSTPTNIEG----MHKDVISSLELSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHA 305 (979)
Q Consensus 230 ~~~~~~~~~----~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~ 305 (979)
......+.. ....+..+|.+||+.|+++ .|.||+|||+||+++.|++..++.+|.+++ +++.+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~ 413 (1249)
T 3sfz_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVED 413 (1249)
T ss_dssp SCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHH
T ss_pred hhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHH
Confidence 766443322 2257999999999999886 999999999999999999999999997652 44566
Q ss_pred HHHHhhhceeEEeCCcc---eEEechhHHHHHHHHhhcc
Q 002024 306 IVSTLISSFLLIAGDEG---YVTMHDVVRDVALVISSKH 341 (979)
Q Consensus 306 ~l~~L~~~~l~~~~~~~---~~~mh~l~~~~~~~~~~~~ 341 (979)
++++|++++|++....+ +|+||+++|+|++....++
T Consensus 414 ~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 414 ILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 78999999999874333 5999999999999987654
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.1e-31 Score=320.50 Aligned_cols=516 Identities=17% Similarity=0.114 Sum_probs=342.0
Q ss_pred CccccCCCCCcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCc
Q 002024 352 GLLEWPIRDTFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSL 428 (979)
Q Consensus 352 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~ 428 (979)
.+..++. ...+++++|++++|.++.++. +.++++|++|++++|.+..+++..|..+++|++|+|++ .+....|..|
T Consensus 22 ~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~ 100 (606)
T 3vq2_A 22 KLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF 100 (606)
T ss_dssp CCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSS
T ss_pred CcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhc
Confidence 3444443 334788999999999887764 56889999999999999988888888999999999998 5554447889
Q ss_pred cCCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcccCcCc--ccchhhccCccccEEecCCCCCccccCcchhccCcCC
Q 002024 429 SFLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCRSSIK--EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL 504 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~--~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L 504 (979)
+.+++|++|++++|.++.++ .++++++|++|++++|.+. .+|..++++++|++|++++|. +..++...++.+++|
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLREN 179 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhcc
Confidence 99999999999999887773 6888999999999999887 478889999999999999865 455554446666665
Q ss_pred c----EEEcccCccccccccccchhccccccccceecccccCCcC--CCC-CCCCCCCCeEEEEEcccccccccc---cc
Q 002024 505 E----EFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSI--LPS-HMPFQHLPNFTIAVRVSWEASDFI---LS 574 (979)
Q Consensus 505 ~----~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~-~~~~~~L~~L~i~~~~~~~~~~~~---~~ 574 (979)
+ .|++++|...... .......+|+.|+++++.... .+. ...+++|+.+.+............ ..
T Consensus 180 ~~~l~~L~l~~n~l~~~~------~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~ 253 (606)
T 3vq2_A 180 PQVNLSLDMSLNPIDFIQ------DQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPS 253 (606)
T ss_dssp TTCCCEEECTTCCCCEEC------TTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGG
T ss_pred ccccceeeccCCCcceeC------cccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChH
Confidence 5 7888887543111 122223378888888765421 111 145566666665443211100000 00
Q ss_pred cc-ccccc-ccccccccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeeccc
Q 002024 575 TS-SVNKY-STRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLE 652 (979)
Q Consensus 575 ~~-~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 652 (979)
.. .+... ...+.+............ ...+++|+.|++.++... . .+.+ ..+++|++|++.+|.. +.++
T Consensus 254 ~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~-l~~l--~~~~~L~~L~l~~n~l-~~lp---- 323 (606)
T 3vq2_A 254 IMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-Y-LEDV--PKHFKWQSLSIIRCQL-KQFP---- 323 (606)
T ss_dssp GGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-C-CCCC--CTTCCCSEEEEESCCC-SSCC----
T ss_pred HhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-h-hhhc--cccccCCEEEcccccC-cccc----
Confidence 00 00000 000000000000111111 234688888888776542 2 2334 4578899999998843 4443
Q ss_pred ccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCccccc-chhHHHhhccCceEeeeccccccce
Q 002024 653 RAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIA-PIHLLRRLKNLEYCSVFFCASLLHV 731 (979)
Q Consensus 653 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~ 731 (979)
.. .+++|++|.++++...... ....+++|+.|++++|. +.... ....+..+++|++|++++|. +..+
T Consensus 324 ---~~-~l~~L~~L~l~~n~~~~~~------~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 391 (606)
T 3vq2_A 324 ---TL-DLPFLKSLTLTMNKGSISF------KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-AIIM 391 (606)
T ss_dssp ---CC-CCSSCCEEEEESCSSCEEC------CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-EEEE
T ss_pred ---cC-CCCccceeeccCCcCccch------hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-cccc
Confidence 22 6788999999887655432 34578899999999874 33332 12347788999999998876 3333
Q ss_pred ecccCCCCccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEec
Q 002024 732 FDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIIS 811 (979)
Q Consensus 732 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~ 811 (979)
+ ..+..+++|+.|+++++........ ..+..+++|+.|++++|.-.... +..+.++++|++|++++
T Consensus 392 ~---------~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~ 457 (606)
T 3vq2_A 392 S---------ANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDF---DGIFLGLTSLNTLKMAG 457 (606)
T ss_dssp C---------CCCTTCTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECTTSCCEECC---TTTTTTCTTCCEEECTT
T ss_pred h---------hhccCCCCCCeeECCCCccCCccCh--hhhhccccCCEEECcCCCCCccc---hhhhcCCCCCCEEECCC
Confidence 2 2255678999999998754332211 12347889999999997744433 46788899999999998
Q ss_pred ccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCC
Q 002024 812 CINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGAS 891 (979)
Q Consensus 812 c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 891 (979)
|...... .|..+..+++|++|++++| +++.+++. .+..+++|++|++++| .++.+.+..
T Consensus 458 n~l~~~~-----------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~------- 516 (606)
T 3vq2_A 458 NSFKDNT-----------LSNVFANTTNLTFLDLSKC-QLEQISWG-VFDTLHRLQLLNMSHN-NLLFLDSSH------- 516 (606)
T ss_dssp CEEGGGE-----------ECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSS-CCSCEEGGG-------
T ss_pred CcCCCcc-----------hHHhhccCCCCCEEECCCC-cCCccChh-hhcccccCCEEECCCC-cCCCcCHHH-------
Confidence 7544321 2667888999999999997 67666544 3578899999999988 455443321
Q ss_pred ccceeeccccccccccCccccccccCCceeecc-ccceeeeccCCCc
Q 002024 892 AERIEFPSLFEMELRNLDSLTCFCSGQFLIEFP-ALEMLTIAECPKI 937 (979)
Q Consensus 892 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~-~L~~L~i~~C~~L 937 (979)
...+++|+.|++++|. ++.+|... ..++ +|++|+++++|-.
T Consensus 517 --~~~l~~L~~L~l~~N~-l~~~p~~~--~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 517 --YNQLYSLSTLDCSFNR-IETSKGIL--QHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp --TTTCTTCCEEECTTSC-CCCEESCG--GGSCTTCCEEECCSCCCC
T ss_pred --ccCCCcCCEEECCCCc-CcccCHhH--hhhcccCcEEEccCCCcc
Confidence 1257899999999976 88888762 3355 6999999986544
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.4e-31 Score=316.12 Aligned_cols=513 Identities=16% Similarity=0.100 Sum_probs=305.8
Q ss_pred cCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEE
Q 002024 362 FEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~ 438 (979)
.+.+++|++++|.++.++ .+.++++|++|++++|.+..+.+..|..+++|++|+|++ .+....|..|+.+++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 346777777777777664 345777777777777777777666677777777777777 44434466777777777777
Q ss_pred eCCCCCCCC--ccccCCcCCcEEEcccCcCcccc-hhhccCccccEEecCCCCCccccCcchhccCcCCc--EEEcccCc
Q 002024 439 LEDCYLGDL--SVIGELSNLEILSLCRSSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLE--EFYMWNTF 513 (979)
Q Consensus 439 L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~--~L~l~~~~ 513 (979)
+++|.++.+ ..++++++|++|++++|.+..++ ..+..+++|++|++++|. +..++...++.+++|+ .|++++|.
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCc
Confidence 777777665 45677777777777777776552 233347777777777754 4455444467777777 66666664
Q ss_pred cccccccccchhccccccccceecccccCCcCCCCC-CCCCCCCeEEEEEcccccccccccccccccccccccccccccc
Q 002024 514 KNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH-MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMR 592 (979)
Q Consensus 514 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 592 (979)
..... ...-...+|+.|+++++.. .+.. ..+.++....+...... . .......
T Consensus 191 l~~~~------~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~~~l~~l~~~~~~---~-----~~~~~i~---------- 244 (606)
T 3t6q_A 191 IAGIE------PGAFDSAVFQSLNFGGTQN--LLVIFKGLKNSTIQSLWLGTFE---D-----MDDEDIS---------- 244 (606)
T ss_dssp CCEEC------TTTTTTCEEEEEECTTCSC--HHHHHHHTTTCEEEEEECCCCT---T-----SCCCCCC----------
T ss_pred cCccC------hhHhhhccccccccCCchh--HHHHhhhccccchhheechhhc---c-----ccccccC----------
Confidence 42111 1122234566666655431 0000 11222222222111000 0 0000000
Q ss_pred cccchHHHHHHhcccceeecccccCccccccc-cccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccC
Q 002024 593 FSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGD-LISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSN 671 (979)
Q Consensus 593 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 671 (979)
...+.+.. -.+|+.|+++++... ...+. + ..+++|++|+++++ .++.++. ....+++|++|+++++
T Consensus 245 -~~~~~~l~--~~~L~~L~l~~n~l~-~~~~~~~--~~l~~L~~L~l~~n-~l~~lp~------~l~~l~~L~~L~l~~n 311 (606)
T 3t6q_A 245 -PAVFEGLC--EMSVESINLQKHYFF-NISSNTF--HCFSGLQELDLTAT-HLSELPS------GLVGLSTLKKLVLSAN 311 (606)
T ss_dssp -GGGGGGGG--GSEEEEEECTTCCCS-SCCTTTT--TTCTTCSEEECTTS-CCSCCCS------SCCSCTTCCEEECTTC
T ss_pred -hhHhchhh--cCceeEEEeecCccC-ccCHHHh--ccccCCCEEeccCC-ccCCCCh------hhcccccCCEEECccC
Confidence 00011100 126788888766433 22222 3 45889999999888 4555532 2456778899988876
Q ss_pred ccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCcccccccccccc
Q 002024 672 HSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLK 751 (979)
Q Consensus 672 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~ 751 (979)
..-... ......+++|+.|++++|.....++. ..+..+++|++|+++++.-. .+.. .+..+..+++|+
T Consensus 312 ~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~------~~~~~~~l~~L~ 379 (606)
T 3t6q_A 312 KFENLC----QISASNFPSLTHLSIKGNTKRLELGT-GCLENLENLRELDLSHDDIE-TSDC------CNLQLRNLSHLQ 379 (606)
T ss_dssp CCSBGG----GGCGGGCTTCSEEECCSCSSCCBCCS-STTTTCTTCCEEECCSSCCC-EEEE------STTTTTTCTTCC
T ss_pred CcCcCc----hhhhhccCcCCEEECCCCCcccccch-hhhhccCcCCEEECCCCccc-cccC------cchhcccCCCCC
Confidence 432211 11234678999999998865444433 33567889999998876532 2210 012245678889
Q ss_pred EEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCC
Q 002024 752 EIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQP 831 (979)
Q Consensus 752 ~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 831 (979)
.|+++++.. ..+.. ..+..+++|+.|++++|.- ....+ +..+..+++|++|++++|.... ..|
T Consensus 380 ~L~l~~n~l-~~~~~--~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~l~~L~~L~l~~n~l~~------------~~~ 442 (606)
T 3t6q_A 380 SLNLSYNEP-LSLKT--EAFKECPQLELLDLAFTRL-KVKDA-QSPFQNLHLLKVLNLSHSLLDI------------SSE 442 (606)
T ss_dssp EEECCSCSC-EEECT--TTTTTCTTCSEEECTTCCE-ECCTT-CCTTTTCTTCCEEECTTCCCBT------------TCT
T ss_pred EEECCCCcC-CcCCH--HHhcCCccCCeEECCCCcC-CCccc-chhhhCcccCCEEECCCCccCC------------cCH
Confidence 999888743 22211 1234678899999988653 33333 4557888899999998875432 225
Q ss_pred CCccccCCccEEEEecCCCceE--eechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCc
Q 002024 832 TTSQGLQNLTTINIQSCSKLVN--LFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLD 909 (979)
Q Consensus 832 ~~~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 909 (979)
..+..+++|++|++++|. +.. ++....+..+++|++|++++| .++.+++.. ...+++|+.|++++|.
T Consensus 443 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~---------~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 443 QLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHA---------FTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTT---------TTTCTTCCEEECCSSC
T ss_pred HHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCC-ccCccChhh---------hccccCCCEEECCCCc
Confidence 567788889999998874 332 222234677889999999888 455553321 1257888999998865
Q ss_pred cccccccCCceeeccccceeeeccCCCceeecCCCc-cccccceEEcccC
Q 002024 910 SLTCFCSGQFLIEFPALEMLTIAECPKIKTFGYGDQ-VTAKLNRVELQEG 958 (979)
Q Consensus 910 ~L~~l~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~-~~~~l~~~~~~~~ 958 (979)
++.++...+ ..+++| .|++++| +++.++.... ..+.++++.+.+.
T Consensus 512 -l~~~~~~~l-~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 557 (606)
T 3t6q_A 512 -LTSSSIEAL-SHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQN 557 (606)
T ss_dssp -CCGGGGGGG-TTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTC
T ss_pred -cCcCChhHh-Cccccc-EEECcCC-cccccCHhhcccCCCCCEEeCCCC
Confidence 666543332 346778 8888887 6666665433 3467788877543
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-31 Score=325.78 Aligned_cols=531 Identities=17% Similarity=0.036 Sum_probs=352.0
Q ss_pred CCCcCCccEEEccCCcccc-cCC-c-CCCCCceEEEccCCCCcccChhh---hcCCCCccEEEecC-CcCCCCCcCccCC
Q 002024 359 RDTFEDLTGISLMSNYIHE-VPA-M-LECPKLQVLLLQENSPLVIPDKF---FQGMKDLKVLDLSY-ILPLSLPPSLSFL 431 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~-~~~-~-~~~~~L~~L~L~~~~~~~~~~~~---~~~l~~L~~L~L~~-~~~~~~p~~~~~l 431 (979)
...++++++|++++|.+.. .|. . .++++|++|++++|.+....+.. +..+++|++|++++ .+....| +..+
T Consensus 122 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l 199 (768)
T 3rgz_A 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRC 199 (768)
T ss_dssp GGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTC
T ss_pred HhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccC
Confidence 4567789999999998763 332 2 47899999999999988777665 78889999999998 4442222 3788
Q ss_pred cCCCEEEeCCCCCCCC-ccccCCcCCcEEEcccCcCc-ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEc
Q 002024 432 VDLRTLRLEDCYLGDL-SVIGELSNLEILSLCRSSIK-EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYM 509 (979)
Q Consensus 432 ~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~-~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l 509 (979)
++|++|+|++|.+... +.++++++|++|++++|.+. .+|..+.++++|++|++++|.....+|. . .+++|++|++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~-~l~~L~~L~L 276 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--L-PLKSLQYLSL 276 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC--C-CCTTCCEEEC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCc--c-ccCCCCEEEC
Confidence 8999999999987654 66888999999999999887 5678888999999999998765545554 2 7888888888
Q ss_pred ccCccccccccccchhcccc-ccccceecccccCCcC-CCCC-CCCCCCCeEEEEEcccc-ccccccccccccccccccc
Q 002024 510 WNTFKNWDCETNAKVVELQA-LTRLTNLMFHFPQNSI-LPSH-MPFQHLPNFTIAVRVSW-EASDFILSTSSVNKYSTRM 585 (979)
Q Consensus 510 ~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~i~~~~~~-~~~~~~~~~~~~~~~~~~l 585 (979)
++|...... ...+.. +++|+.|+++++.... .|.. ..+++|++|++..+... ..+... +.--.-...+
T Consensus 277 ~~n~l~~~i-----p~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L 348 (768)
T 3rgz_A 277 AENKFTGEI-----PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT---LLKMRGLKVL 348 (768)
T ss_dssp CSSEEEESC-----CCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCTTCCEE
T ss_pred cCCccCCcc-----CHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHH---HhcCCCCCEE
Confidence 887553221 133333 3777777777766542 2322 56677777776544321 111000 0000011222
Q ss_pred ccccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccch
Q 002024 586 ILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEE 665 (979)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~ 665 (979)
+++++......+..+....++|+.|+++++.......+.+....+++|++|++++|.....++ ..+..+++|++
T Consensus 349 ~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~ 422 (768)
T 3rgz_A 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP------PTLSNCSELVS 422 (768)
T ss_dssp ECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC------GGGGGCTTCCE
T ss_pred eCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC------HHHhcCCCCCE
Confidence 233222212334444444348999999877655555555543447889999999883322222 13456788999
Q ss_pred hccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCcccccc
Q 002024 666 LTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETK 745 (979)
Q Consensus 666 L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 745 (979)
|+++++..-...+ ...+.+++|+.|++++|.....++. .+..+++|+.|++++|.-...+ +..+.
T Consensus 423 L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~---------p~~l~ 487 (768)
T 3rgz_A 423 LHLSFNYLSGTIP----SSLGSLSKLRDLKLWLNMLEGEIPQ--ELMYVKTLETLILDFNDLTGEI---------PSGLS 487 (768)
T ss_dssp EECCSSEEESCCC----GGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSSCCCSCC---------CGGGG
T ss_pred EECcCCcccCccc----HHHhcCCCCCEEECCCCcccCcCCH--HHcCCCCceEEEecCCcccCcC---------CHHHh
Confidence 9998764322221 1134678999999999865444432 2567899999999887543333 22356
Q ss_pred ccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcc--
Q 002024 746 FLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKME-- 823 (979)
Q Consensus 746 ~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~-- 823 (979)
.+++|+.|+++++.....+.. .+..+++|+.|++++|.-...+ |..+..+++|+.|++++|.....++....
T Consensus 488 ~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 488 NCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNI---PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEEEC---CGGGGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred cCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcccCcC---CHHHcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 789999999999864433332 3457899999999998655455 57789999999999998754322221110
Q ss_pred --------------------------------------------------------cccccCCCCCccccCCccEEEEec
Q 002024 824 --------------------------------------------------------MMRKNSQPTTSQGLQNLTTINIQS 847 (979)
Q Consensus 824 --------------------------------------------------------~~~~~~~~~~~~~~~~L~~L~l~~ 847 (979)
....+..|..+..+++|+.|++++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~ 641 (768)
T 3rgz_A 562 SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641 (768)
T ss_dssp TTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCS
T ss_pred cchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcC
Confidence 001122355567788999999999
Q ss_pred CCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCcccc-ccccCCceeecccc
Q 002024 848 CSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLT-CFCSGQFLIEFPAL 926 (979)
Q Consensus 848 c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~-~l~~~~~~~~~~~L 926 (979)
+ +++...|.. ++.+++|+.|++++|.--..+|.... .+++|+.|+++++. |+ .+|... ..+++|
T Consensus 642 N-~l~g~ip~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~----------~L~~L~~LdLs~N~-l~g~ip~~l--~~l~~L 706 (768)
T 3rgz_A 642 N-MLSGYIPKE-IGSMPYLFILNLGHNDISGSIPDEVG----------DLRGLNILDLSSNK-LDGRIPQAM--SALTML 706 (768)
T ss_dssp S-CCBSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGG----------GCTTCCEEECCSSC-CEECCCGGG--GGCCCC
T ss_pred C-cccccCCHH-HhccccCCEEeCcCCccCCCCChHHh----------CCCCCCEEECCCCc-ccCcCChHH--hCCCCC
Confidence 7 455433433 68899999999999854335555433 68999999999966 65 566543 347899
Q ss_pred ceeeeccCCCceeecCCC
Q 002024 927 EMLTIAECPKIKTFGYGD 944 (979)
Q Consensus 927 ~~L~i~~C~~L~~l~~~~ 944 (979)
++|++++|+---.+|.+.
T Consensus 707 ~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 707 TEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp SEEECCSSEEEEECCSSS
T ss_pred CEEECcCCcccccCCCch
Confidence 999999985545577654
No 7
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.98 E-value=2.6e-31 Score=314.88 Aligned_cols=307 Identities=20% Similarity=0.271 Sum_probs=234.4
Q ss_pred CCCCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhh-ccCC-CeEEEEEeccCCCHHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQE-SKRY-DTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~-~~~f-~~~~~~~~~~~~~~~~~~~~ 81 (979)
|+.+..||||++++++|.+.+. .++.++|+|+|+||+||||||++++++... ...| +.++|++++.. +...+...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 5677889999999999999997 345789999999999999999999987654 5678 58999999765 33333333
Q ss_pred ---HHHHhCCc-----ccccchHHHHHHHHHHHhc-CCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhh
Q 002024 82 ---IAAVLGLT-----ICGIEESARAGYLWERIKM-EKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCN 152 (979)
Q Consensus 82 ---i~~~l~~~-----~~~~~~~~~~~~~~~~l~~-~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~ 152 (979)
++..++.. ....+.......+...+.. .+++||||||+|+...+..+ .++++||||||+..++.
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~ 271 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTD 271 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGT
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHH
Confidence 34455421 1111223334445555543 37899999999987665532 46899999999998776
Q ss_pred ccCCcceEEc---CCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHhcCCChhHHHHHHHHHh
Q 002024 153 QMDAQKIFIV---RTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALKNRNNKYVWIDAAQQLK 229 (979)
Q Consensus 153 ~~~~~~~~~l---~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~ 229 (979)
.+. ...+++ ++|+.+|++++|...++.. .....+.+.+|+++|+|+|+||+++|++++... ..|..+++++.
T Consensus 272 ~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~ 346 (591)
T 1z6t_A 272 SVM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQ 346 (591)
T ss_dssp TCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHH
T ss_pred hcC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHH
Confidence 543 334454 5899999999999998742 223345789999999999999999999999864 57999999887
Q ss_pred hcCCCccC----CchhhhhhhhhhhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeecccccHHHHHHHHHH
Q 002024 230 KSTPTNIE----GMHKDVISSLELSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVETLEEARVRTHA 305 (979)
Q Consensus 230 ~~~~~~~~----~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~~~~~~~~~~~ 305 (979)
......+. ....++..++..||+.||++ .+.||.++|+||+++.|+...+...|...+ .+...
T Consensus 347 ~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~ 413 (591)
T 1z6t_A 347 NKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVED 413 (591)
T ss_dssp SCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHH
T ss_pred HhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHH
Confidence 65433222 22357999999999999886 999999999999999999999999996541 23456
Q ss_pred HHHHhhhceeEEeC---CcceEEechhHHHHHHHHh
Q 002024 306 IVSTLISSFLLIAG---DEGYVTMHDVVRDVALVIS 338 (979)
Q Consensus 306 ~l~~L~~~~l~~~~---~~~~~~mh~l~~~~~~~~~ 338 (979)
.+++|++++|+... ...+|+||+++|++++...
T Consensus 414 ~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 414 ILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 78999999998753 3347999999999999883
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.98 E-value=1.5e-31 Score=326.16 Aligned_cols=440 Identities=18% Similarity=0.069 Sum_probs=223.2
Q ss_pred CCCcCCccEEEccCCccc-ccC---CcCCCCCceEEEccCCCCccc-ChhhhcCCCCccEEEecC-CcCCCCCcC---cc
Q 002024 359 RDTFEDLTGISLMSNYIH-EVP---AMLECPKLQVLLLQENSPLVI-PDKFFQGMKDLKVLDLSY-ILPLSLPPS---LS 429 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~-~~~---~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~-~~~~~~p~~---~~ 429 (979)
...++++++|++++|.+. .+| .+.++++|++|++++|.+... +...+.++++|++|+|++ .+....|.. +.
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 175 (768)
T 3rgz_A 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175 (768)
T ss_dssp CCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTT
T ss_pred hccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhc
Confidence 345566666667666665 233 234666667777666666532 333335666677777666 333233333 56
Q ss_pred CCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEc
Q 002024 430 FLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYM 509 (979)
Q Consensus 430 ~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l 509 (979)
.+++|++|++++|.+.....+..+++|++|++++|.+...+..++++++|++|++++|.....+|.. +..+++|++|++
T Consensus 176 ~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L 254 (768)
T 3rgz_A 176 GCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNI 254 (768)
T ss_dssp CCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEEC
T ss_pred cCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEEC
Confidence 6666777777766655554456667777777777766643333666777777777766543344444 666777777777
Q ss_pred ccCccccccccccchhccccccccceecccccCCc-CCCCC-CC-CCCCCeEEEEEcccccccccccccccccccccccc
Q 002024 510 WNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNS-ILPSH-MP-FQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMI 586 (979)
Q Consensus 510 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~-~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 586 (979)
++|....... .. .+++|+.|+++++... .+|.. .. +++|++|++..+....
T Consensus 255 s~n~l~~~~~------~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~------------------- 308 (768)
T 3rgz_A 255 SSNQFVGPIP------PL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG------------------- 308 (768)
T ss_dssp CSSCCEESCC------CC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE-------------------
T ss_pred CCCcccCccC------cc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC-------------------
Confidence 6664421111 11 5666677777666554 33333 22 3666666664332210
Q ss_pred cccccccccchHHHHHHhcccceeecccccCccccccc-cccCCcccccEEEEeccCCceEEeecccccCCccccc-ccc
Q 002024 587 LSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGD-LISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFH-NLE 664 (979)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~-~L~ 664 (979)
..+..+ ..+++|+.|+++++......... + ..+++|++|++++|.....++ .....++ +|+
T Consensus 309 --------~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l--~~l~~L~~L~Ls~n~l~~~~p------~~l~~l~~~L~ 371 (768)
T 3rgz_A 309 --------AVPPFF-GSCSLLESLALSSNNFSGELPMDTL--LKMRGLKVLDLSFNEFSGELP------ESLTNLSASLL 371 (768)
T ss_dssp --------CCCGGG-GGCTTCCEEECCSSEEEEECCHHHH--TTCTTCCEEECCSSEEEECCC------TTHHHHTTTCS
T ss_pred --------ccchHH-hcCCCccEEECCCCcccCcCCHHHH--hcCCCCCEEeCcCCccCcccc------HHHHhhhcCCc
Confidence 011111 12466677777655433222222 2 346677777776662211221 1222333 666
Q ss_pred hhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccc
Q 002024 665 ELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQET 744 (979)
Q Consensus 665 ~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 744 (979)
+|+++++......+. .+....+++|++|++++|.....++ . .+.++++|+.|++++|.-...+ +..+
T Consensus 372 ~L~Ls~N~l~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~p-~-~l~~l~~L~~L~Ls~N~l~~~~---------p~~l 438 (768)
T 3rgz_A 372 TLDLSSNNFSGPILP--NLCQNPKNTLQELYLQNNGFTGKIP-P-TLSNCSELVSLHLSFNYLSGTI---------PSSL 438 (768)
T ss_dssp EEECCSSEEEEECCT--TTTCSTTCCCCEEECCSSEEEEECC-G-GGGGCTTCCEEECCSSEEESCC---------CGGG
T ss_pred EEEccCCCcCCCcCh--hhhhcccCCccEEECCCCccccccC-H-HHhcCCCCCEEECcCCcccCcc---------cHHH
Confidence 666665432221111 1111125566666666664322222 1 2455666666666665322121 1123
Q ss_pred cccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhccc
Q 002024 745 KFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEM 824 (979)
Q Consensus 745 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 824 (979)
..+++|+.|+++++.....+.. .+..+++|+.|++.+|.-...+ |..+.++++|+.|++++|....
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~---p~~l~~l~~L~~L~L~~N~l~~-------- 504 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQ---ELMYVKTLETLILDFNDLTGEI---PSGLSNCTNLNWISLSNNRLTG-------- 504 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCCS--------
T ss_pred hcCCCCCEEECCCCcccCcCCH---HHcCCCCceEEEecCCcccCcC---CHHHhcCCCCCEEEccCCccCC--------
Confidence 4455666666665532222211 2234556666666665433222 3455566666666666554322
Q ss_pred ccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEeccc
Q 002024 825 MRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCA 875 (979)
Q Consensus 825 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 875 (979)
..|..+..+++|++|++++|. +....|. .+..+++|++|++++|+
T Consensus 505 ----~~p~~~~~l~~L~~L~L~~N~-l~~~~p~-~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 505 ----EIPKWIGRLENLAILKLSNNS-FSGNIPA-ELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp ----CCCGGGGGCTTCCEEECCSSC-CEEECCG-GGGGCTTCCEEECCSSE
T ss_pred ----cCChHHhcCCCCCEEECCCCc-ccCcCCH-HHcCCCCCCEEECCCCc
Confidence 124455555666666666653 3322222 14555666666665553
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.98 E-value=7.3e-31 Score=317.61 Aligned_cols=521 Identities=16% Similarity=0.139 Sum_probs=250.0
Q ss_pred CCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCc-CccCCcCCCEEE
Q 002024 363 EDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP-SLSFLVDLRTLR 438 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~-~~~~l~~L~~L~ 438 (979)
+++++|++++|.++.++. +.++++|++|++++|.+..+++..|+.+++|++|+|++ .+. .+|. .|..+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEE
Confidence 456666666666665552 44566666666666666666666666666666666666 333 4443 466666666666
Q ss_pred eCCCCCCCCc--cccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhc--cCcCCcEEEcccCc
Q 002024 439 LEDCYLGDLS--VIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVIS--QLDKLEEFYMWNTF 513 (979)
Q Consensus 439 L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~--~L~~L~~L~l~~~~ 513 (979)
|++|.++.++ .++++++|++|++++|.+... |..++++++|++|++++|. +..++...+. .+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCc
Confidence 6666665552 456666666666666665543 3445666666666666643 3333332222 34566666666553
Q ss_pred cccccccccchhccccccccceecccccCCcCC-----CCCCCCCCCCeEEEEEcccccccccccccccccccccccccc
Q 002024 514 KNWDCETNAKVVELQALTRLTNLMFHFPQNSIL-----PSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILS 588 (979)
Q Consensus 514 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 588 (979)
... .....+..+++|+.|.+..+..... +.....++|+.|.+..+.....
T Consensus 183 l~~-----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~-------------------- 237 (680)
T 1ziw_A 183 IKE-----FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT-------------------- 237 (680)
T ss_dssp CCC-----BCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE--------------------
T ss_pred ccc-----cChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc--------------------
Confidence 321 1123344555555555544322100 0001224555555433211100
Q ss_pred cccccccchHHHHH-HhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhc
Q 002024 589 HDMRFSPLLGWVKD-LLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667 (979)
Q Consensus 589 ~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 667 (979)
.+.++.. ..++|+.|+++++.........+ ..+++|++|+++++ .+..+... ....+++|++|.
T Consensus 238 -------~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~~~-----~~~~l~~L~~L~ 302 (680)
T 1ziw_A 238 -------SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF--AWLPQLEYFFLEYN-NIQHLFSH-----SLHGLFNVRYLN 302 (680)
T ss_dssp -------CTTTTGGGGGSCCCEEECTTSCCCEECTTTT--TTCTTCCEEECCSC-CBSEECTT-----TTTTCTTCCEEE
T ss_pred -------ChhHhhccCcCCCCEEECCCCCcCccCcccc--cCcccccEeeCCCC-ccCccChh-----hhcCCCCccEEe
Confidence 0001100 01347777776654332222223 34677777777776 33333211 334556666666
Q ss_pred cccCcccee-----ecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeecccc-ccceecc-------
Q 002024 668 IYSNHSFVE-----ICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCAS-LLHVFDL------- 734 (979)
Q Consensus 668 l~~~~~l~~-----~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~-l~~~~~~------- 734 (979)
+.++..-.. ++.-.......+++|++|++++|. +..+++ ..+..+++|++|++++|.. +..+...
T Consensus 303 L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~ 380 (680)
T 1ziw_A 303 LKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380 (680)
T ss_dssp CTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTT
T ss_pred ccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhccccc
Confidence 654321110 000001112345666666666653 233322 2244566666666665531 1111100
Q ss_pred ----------cCCCC-ccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcc
Q 002024 735 ----------QGLDN-VNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLAS 803 (979)
Q Consensus 735 ----------~~~~~-~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~ 803 (979)
..+.. .+..+..+++|+.|+++++.....+... .+..+++|+.|++++|. +..+. +..+..+++
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~~~~ 455 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ--EWRGLENIFEIYLSYNK-YLQLT--RNSFALVPS 455 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG--GGTTCTTCCEEECCSCS-EEECC--TTTTTTCTT
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc--cccCcccccEEecCCCC-cceeC--hhhhhcCcc
Confidence 00000 1122344566666666655322211111 12345555555555543 22221 233444444
Q ss_pred cceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEeccc--------
Q 002024 804 LEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCA-------- 875 (979)
Q Consensus 804 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~-------- 875 (979)
|+.|++.+|..-. ....|..+..+++|+.|++++| +++.+++. .+..+++|++|++++|.
T Consensus 456 L~~L~l~~n~l~~----------~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~ 523 (680)
T 1ziw_A 456 LQRLMLRRVALKN----------VDSSPSPFQPLRNLTILDLSNN-NIANINDD-MLEGLEKLEILDLQHNNLARLWKHA 523 (680)
T ss_dssp CCEEECTTSCCBC----------TTCSSCTTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred cccchhccccccc----------cccCCcccccCCCCCEEECCCC-CCCcCChh-hhccccccCEEeCCCCCccccchhh
Confidence 4444444432110 0012334444455555555543 33333221 12344444444444431
Q ss_pred -----------------------ccceeeccccccCCCCccceeeccccccccccCccccccccCCceeeccccceeeec
Q 002024 876 -----------------------AVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQFLIEFPALEMLTIA 932 (979)
Q Consensus 876 -----------------------~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~ 932 (979)
.++.++.. ....+++|+.|+++++ +|+.++...+ ..+++|+.|+++
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~---------~~~~l~~L~~L~Ls~N-~l~~l~~~~~-~~l~~L~~L~L~ 592 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVE---------VFKDLFELKIIDLGLN-NLNTLPASVF-NNQVSLKSLNLQ 592 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECT
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCCCHH---------HcccccCcceeECCCC-CCCcCCHhHh-CCCCCCCEEECC
Confidence 23333321 1124677888888764 4777776543 236888888888
Q ss_pred cCCCceeecCCCc--cccccceEEcc
Q 002024 933 ECPKIKTFGYGDQ--VTAKLNRVELQ 956 (979)
Q Consensus 933 ~C~~L~~l~~~~~--~~~~l~~~~~~ 956 (979)
+| +++.++.... ..++++.+.+.
T Consensus 593 ~N-~l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 593 KN-LITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp TS-CCCBCCHHHHHHHHTTCSEEECT
T ss_pred CC-cCCccChhHhcccccccCEEEcc
Confidence 86 7777765433 24677887773
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.8e-30 Score=309.83 Aligned_cols=490 Identities=16% Similarity=0.117 Sum_probs=321.8
Q ss_pred CCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCC
Q 002024 358 IRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDL 434 (979)
Q Consensus 358 ~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L 434 (979)
....++++++|++++|.+..+. .+.++++|++|++++|.+..+++..|+.+++|++|+|++ .+....|..+..+++|
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcc
Confidence 3567889999999999998774 466999999999999999999888899999999999999 5553336789999999
Q ss_pred CEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCccc-chhhccCcccc--EEecCCCCCccccCcchhccCcCCcEEEc
Q 002024 435 RTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEI-PETFCRLSHLW--LLDLDHCRQLALIPHGVISQLDKLEEFYM 509 (979)
Q Consensus 435 ~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~--~L~l~~c~~~~~~p~~~l~~L~~L~~L~l 509 (979)
++|++++|.++.+ +.+..+++|++|++++|.+..+ |..++.+++|+ +|++++|. +..+++. .....+|+.|++
T Consensus 132 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~-l~~~~~~-~~~~~~L~~L~l 209 (606)
T 3t6q_A 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND-IAGIEPG-AFDSAVFQSLNF 209 (606)
T ss_dssp CEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC-CCEECTT-TTTTCEEEEEEC
T ss_pred cEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc-cCccChh-Hhhhcccccccc
Confidence 9999999998876 6677799999999999999977 56799999999 89999975 5556655 445578999999
Q ss_pred ccCccccccccccchhccccccccceecccccCCcCCCCC----CCCC-----CCCeEEEEEcccccccccccccccccc
Q 002024 510 WNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH----MPFQ-----HLPNFTIAVRVSWEASDFILSTSSVNK 580 (979)
Q Consensus 510 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~-----~L~~L~i~~~~~~~~~~~~~~~~~~~~ 580 (979)
++|... ...+..+.++....+........... ..+. +|+.|.+..+..
T Consensus 210 ~~~~~~--------~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l--------------- 266 (606)
T 3t6q_A 210 GGTQNL--------LVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF--------------- 266 (606)
T ss_dssp TTCSCH--------HHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC---------------
T ss_pred CCchhH--------HHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc---------------
Confidence 887521 11222222222222211111100000 0000 222222211100
Q ss_pred cccccccccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccc
Q 002024 581 YSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETF 660 (979)
Q Consensus 581 ~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~ 660 (979)
...+......+++|++|+++++.. ......+ ..+++|++|++++| .+..+.. .....+
T Consensus 267 -------------~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~l--~~l~~L~~L~l~~n-~l~~~~~-----~~~~~l 324 (606)
T 3t6q_A 267 -------------FNISSNTFHCFSGLQELDLTATHL-SELPSGL--VGLSTLKKLVLSAN-KFENLCQ-----ISASNF 324 (606)
T ss_dssp -------------SSCCTTTTTTCTTCSEEECTTSCC-SCCCSSC--CSCTTCCEEECTTC-CCSBGGG-----GCGGGC
T ss_pred -------------CccCHHHhccccCCCEEeccCCcc-CCCChhh--cccccCCEEECccC-CcCcCch-----hhhhcc
Confidence 000001111246777777766543 2333344 45788888888887 3333211 134567
Q ss_pred cccchhccccCccceeecccCccCCCCCCCccEEeeeccCCccccc-chhHHHhhccCceEeeeccccccceecccCCCC
Q 002024 661 HNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIA-PIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDN 739 (979)
Q Consensus 661 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~ 739 (979)
++|++|.++++......+. .....+++|++|++++|.. .... ....+..+++|++|++++|.-. .+.
T Consensus 325 ~~L~~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~------- 392 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGT---GCLENLENLRELDLSHDDI-ETSDCCNLQLRNLSHLQSLNLSYNEPL-SLK------- 392 (606)
T ss_dssp TTCSEEECCSCSSCCBCCS---STTTTCTTCCEEECCSSCC-CEEEESTTTTTTCTTCCEEECCSCSCE-EEC-------
T ss_pred CcCCEEECCCCCcccccch---hhhhccCcCCEEECCCCcc-ccccCcchhcccCCCCCEEECCCCcCC-cCC-------
Confidence 7888888887654322211 1124678899999988754 3332 1223567889999999876532 221
Q ss_pred ccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHH
Q 002024 740 VNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIF 819 (979)
Q Consensus 740 ~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~ 819 (979)
+..+..+++|+.|+++++........ ..+..+++|+.|++++|.- .... +..+..+++|++|++++|......+
T Consensus 393 -~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l-~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~ 466 (606)
T 3t6q_A 393 -TEAFKECPQLELLDLAFTRLKVKDAQ--SPFQNLHLLKVLNLSHSLL-DISS--EQLFDGLPALQHLNLQGNHFPKGNI 466 (606)
T ss_dssp -TTTTTTCTTCSEEECTTCCEECCTTC--CTTTTCTTCCEEECTTCCC-BTTC--TTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred -HHHhcCCccCCeEECCCCcCCCcccc--hhhhCcccCCEEECCCCcc-CCcC--HHHHhCCCCCCEEECCCCCCCcccc
Confidence 12245578899999988753322111 1244788999999998754 3332 4668889999999999876433110
Q ss_pred hhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeecc
Q 002024 820 GKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPS 899 (979)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~ 899 (979)
..+..+..+++|++|++++| +++.+++. .+..+++|++|++++|. ++..++.. ...+++
T Consensus 467 ---------~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~---------l~~l~~ 525 (606)
T 3t6q_A 467 ---------QKTNSLQTLGRLEILVLSFC-DLSSIDQH-AFTSLKMMNHVDLSHNR-LTSSSIEA---------LSHLKG 525 (606)
T ss_dssp ---------CSSCGGGGCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECCSSC-CCGGGGGG---------GTTCCS
T ss_pred ---------ccchhhccCCCccEEECCCC-ccCccChh-hhccccCCCEEECCCCc-cCcCChhH---------hCcccc
Confidence 11345778899999999997 57776544 35788999999999884 44333221 125677
Q ss_pred ccccccccCccccccccCCceeeccccceeeeccCCC
Q 002024 900 LFEMELRNLDSLTCFCSGQFLIEFPALEMLTIAECPK 936 (979)
Q Consensus 900 L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~ 936 (979)
| .|++++|. ++.++...+ ..+++|+.|++++||-
T Consensus 526 L-~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 526 I-YLNLASNH-ISIILPSLL-PILSQQRTINLRQNPL 559 (606)
T ss_dssp C-EEECCSSC-CCCCCGGGH-HHHHTSSEEECTTCCE
T ss_pred c-EEECcCCc-ccccCHhhc-ccCCCCCEEeCCCCCc
Confidence 8 88898865 777765433 3478999999999764
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=4.5e-30 Score=306.41 Aligned_cols=461 Identities=18% Similarity=0.112 Sum_probs=328.8
Q ss_pred CCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCC
Q 002024 359 RDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDL 434 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L 434 (979)
...++++++|++++|.++.++ .+.++++|++|++++|.+..+++..|+++++|++|+|++ .+. .++ ..++.+++|
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 130 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITL 130 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCC
Confidence 567889999999999999875 356899999999999999999888899999999999999 555 444 789999999
Q ss_pred CEEEeCCCCCCC--C-ccccCCcCCcEEEcccCcCccc-chhhccCcccc----EEecCCCCCccccCcchhccCcCCcE
Q 002024 435 RTLRLEDCYLGD--L-SVIGELSNLEILSLCRSSIKEI-PETFCRLSHLW----LLDLDHCRQLALIPHGVISQLDKLEE 506 (979)
Q Consensus 435 ~~L~L~~~~l~~--l-~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~----~L~l~~c~~~~~~p~~~l~~L~~L~~ 506 (979)
++|++++|.+.. + ..++++++|++|++++|.+..+ |..++.+++|+ +|++++|. +..++...+. ..+|+.
T Consensus 131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~-~~~L~~ 208 (606)
T 3vq2_A 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQ-GIKLHE 208 (606)
T ss_dssp CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTT-TCEEEE
T ss_pred CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCC-cceeCccccc-Cceeee
Confidence 999999999875 3 5699999999999999999877 45677777665 89999965 6777777444 449999
Q ss_pred EEcccCccccccccccchhccccccccceecccccCCcCC----------------------------------CCCCCC
Q 002024 507 FYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSIL----------------------------------PSHMPF 552 (979)
Q Consensus 507 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----------------------------------~~~~~~ 552 (979)
|++++|.... ......+.++++|+.+.+........ +....+
T Consensus 209 L~L~~n~~~~----~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l 284 (606)
T 3vq2_A 209 LTLRGNFNSS----NIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284 (606)
T ss_dssp EEEESCCSCH----HHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGG
T ss_pred eeccCCccch----hHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccC
Confidence 9999885431 12224455666666665543222111 111233
Q ss_pred CCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCccccccccccCCccc
Q 002024 553 QHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTE 632 (979)
Q Consensus 553 ~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~ 632 (979)
++|+.|.+...... ..+ + ...+++|+.|+++++.. .. .+.+ .+++
T Consensus 285 ~~L~~L~l~~~~~~----------------------------~l~-~-l~~~~~L~~L~l~~n~l-~~-lp~~---~l~~ 329 (606)
T 3vq2_A 285 ANVSAMSLAGVSIK----------------------------YLE-D-VPKHFKWQSLSIIRCQL-KQ-FPTL---DLPF 329 (606)
T ss_dssp TTCSEEEEESCCCC----------------------------CCC-C-CCTTCCCSEEEEESCCC-SS-CCCC---CCSS
T ss_pred CCCCEEEecCccch----------------------------hhh-h-ccccccCCEEEcccccC-cc-cccC---CCCc
Confidence 44444444322110 000 0 11247899999988765 33 3343 5899
Q ss_pred ccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHH
Q 002024 633 LKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLR 712 (979)
Q Consensus 633 L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 712 (979)
|++|+++++.....+ ....+++|++|+++++.- +..... ......+++|+.|++++|. +..++ ..+.
T Consensus 330 L~~L~l~~n~~~~~~--------~~~~l~~L~~L~ls~n~l-~~~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~ 396 (606)
T 3vq2_A 330 LKSLTLTMNKGSISF--------KKVALPSLSYLDLSRNAL-SFSGCC-SYSDLGTNSLRHLDLSFNG-AIIMS--ANFM 396 (606)
T ss_dssp CCEEEEESCSSCEEC--------CCCCCTTCCEEECCSSCE-EEEEEC-CHHHHCCSCCCEEECCSCS-EEEEC--CCCT
T ss_pred cceeeccCCcCccch--------hhccCCCCCEEECcCCcc-CCCcch-hhhhccCCcccEeECCCCc-cccch--hhcc
Confidence 999999999655443 445788999999987643 222100 1112468999999999986 45554 3366
Q ss_pred hhccCceEeeeccccccceecccCCCCccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCccccc
Q 002024 713 RLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLF 792 (979)
Q Consensus 713 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~ 792 (979)
.+++|+.|++++|.-....+ ...+..+++|+.|+++++.....+.. .+..+++|+.|++++|.--....
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~--------~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~ 465 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTE--------FSAFLSLEKLLYLDISYTNTKIDFDG---IFLGLTSLNTLKMAGNSFKDNTL 465 (606)
T ss_dssp TCTTCCEEECTTSEEESTTT--------TTTTTTCTTCCEEECTTSCCEECCTT---TTTTCTTCCEEECTTCEEGGGEE
T ss_pred CCCCCCeeECCCCccCCccC--------hhhhhccccCCEEECcCCCCCccchh---hhcCCCCCCEEECCCCcCCCcch
Confidence 78999999999875332211 01245679999999999864332222 34578999999999975443222
Q ss_pred CCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEe
Q 002024 793 SHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVI 872 (979)
Q Consensus 793 ~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~ 872 (979)
+..+..+++|++|++++|.... ..|..+..+++|++|++++| +++.+.+. .+..+++|++|+++
T Consensus 466 --~~~~~~l~~L~~L~Ls~n~l~~------------~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 466 --SNVFANTTNLTFLDLSKCQLEQ------------ISWGVFDTLHRLQLLNMSHN-NLLFLDSS-HYNQLYSLSTLDCS 529 (606)
T ss_dssp --CSCCTTCTTCCEEECTTSCCCE------------ECTTTTTTCTTCCEEECCSS-CCSCEEGG-GTTTCTTCCEEECT
T ss_pred --HHhhccCCCCCEEECCCCcCCc------------cChhhhcccccCCEEECCCC-cCCCcCHH-HccCCCcCCEEECC
Confidence 4678899999999999985432 22567889999999999998 56666444 36889999999999
Q ss_pred cccccceeeccccccCCCCccceeec-cccccccccCccccc
Q 002024 873 SCAAVQEIVTDRERSKGASAERIEFP-SLFEMELRNLDSLTC 913 (979)
Q Consensus 873 ~c~~l~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c~~L~~ 913 (979)
+| .++.+|.... .++ +|+.|++++++ +..
T Consensus 530 ~N-~l~~~p~~~~----------~l~~~L~~l~l~~N~-~~c 559 (606)
T 3vq2_A 530 FN-RIETSKGILQ----------HFPKSLAFFNLTNNS-VAC 559 (606)
T ss_dssp TS-CCCCEESCGG----------GSCTTCCEEECCSCC-CCC
T ss_pred CC-cCcccCHhHh----------hhcccCcEEEccCCC-ccc
Confidence 98 4777776533 455 69999999977 443
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=6.2e-30 Score=301.40 Aligned_cols=170 Identities=21% Similarity=0.214 Sum_probs=113.2
Q ss_pred EEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCC
Q 002024 368 ISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGD 446 (979)
Q Consensus 368 l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~ 446 (979)
.+.+++.++.+|... .++|++|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|.++.
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 88 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS 88 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence 455666677776533 26777777777777777666677777777777777 4443344667777777777777777766
Q ss_pred Cc--cccCCcCCcEEEcccCcCcc--cchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccccc
Q 002024 447 LS--VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNA 522 (979)
Q Consensus 447 l~--~i~~L~~L~~L~Ls~~~l~~--lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 522 (979)
++ .++++++|++|++++|.+.. .|..++++++|++|++++|..+..+|...+..+++|++|++++|.... .
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-----~ 163 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN-----Y 163 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-----E
T ss_pred cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc-----c
Confidence 62 37777777777777777764 355677777777777777665666665446777777777777665431 1
Q ss_pred chhccccccccceecccccCC
Q 002024 523 KVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 523 ~~~~l~~l~~L~~L~l~~~~~ 543 (979)
....++.+++|+.|+++.+..
T Consensus 164 ~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 164 QSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTTTTTCSEEEEEEEECSBS
T ss_pred ChhhhhccccCceEecccCcc
Confidence 234556666677776665543
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.7e-29 Score=305.68 Aligned_cols=528 Identities=18% Similarity=0.149 Sum_probs=329.5
Q ss_pred CCCcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCC
Q 002024 359 RDTFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDL 434 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L 434 (979)
...++++++|++++|.+..+++ +.++++|++|++++|.+..+++..|..+++|++|+|++ .+. .+| ..|+.+++|
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 123 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNL 123 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCC
Confidence 4567889999999999887753 44899999999999999999988899999999999999 555 554 678999999
Q ss_pred CEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccch-hh--ccCccccEEecCCCCCccccCcchhccCcCCcEEEc
Q 002024 435 RTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TF--CRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYM 509 (979)
Q Consensus 435 ~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i--~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l 509 (979)
++|++++|.++.. ..++++++|++|++++|.+..++. .+ ..+++|++|++++|. +..+++..+..+.+|+.|++
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l 202 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFL 202 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCBCTTGGGGSSEECEEEC
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-ccccChhhhhhhhhhhhhhc
Confidence 9999999988766 467889999999999999887754 33 356899999999975 45554444666655555554
Q ss_pred c---------------------------cCccccccccccchhccccccc--cceecccccCCcCCCCC--CCCCCCCeE
Q 002024 510 W---------------------------NTFKNWDCETNAKVVELQALTR--LTNLMFHFPQNSILPSH--MPFQHLPNF 558 (979)
Q Consensus 510 ~---------------------------~~~~~~~~~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~~--~~~~~L~~L 558 (979)
. +|... ......+..++. |+.|+++++.....+.. ..+++|+.|
T Consensus 203 ~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 277 (680)
T 1ziw_A 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-----TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYF 277 (680)
T ss_dssp TTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC-----EECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccChhhHHHHHHHhhhccccEEEccCCccc-----ccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEe
Confidence 4 33221 111233444544 88888877766555432 567778877
Q ss_pred EEEEccccccccc-cccccccccccccccccccccc-------cc-chHHHHHHhcccceeecccccCccccccccccCC
Q 002024 559 TIAVRVSWEASDF-ILSTSSVNKYSTRMILSHDMRF-------SP-LLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGG 629 (979)
Q Consensus 559 ~i~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~-------~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~ 629 (979)
++..+........ ...... ...+.+.+.... .+ ........+++|++|+++++.........+ .+
T Consensus 278 ~L~~n~l~~~~~~~~~~l~~----L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~ 351 (680)
T 1ziw_A 278 FLEYNNIQHLFSHSLHGLFN----VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMF--TG 351 (680)
T ss_dssp ECCSCCBSEECTTTTTTCTT----CCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTT--TT
T ss_pred eCCCCccCccChhhhcCCCC----ccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHh--cc
Confidence 7764432211100 000000 011111110000 00 000011124666666665543322111112 34
Q ss_pred cccccEEEEeccCC-ceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccch
Q 002024 630 FTELKCLTLQSCDN-VKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPI 708 (979)
Q Consensus 630 l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 708 (979)
+++|++|++++|.. +..++.... .....++|+.|+++++..-... ......+++|+.|+++++.....+++
T Consensus 352 l~~L~~L~Ls~n~~~~~~l~~~~f---~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~- 423 (680)
T 1ziw_A 352 LINLKYLSLSNSFTSLRTLTNETF---VSLAHSPLHILNLTKNKISKIE----SDAFSWLGHLEVLDLGLNEIGQELTG- 423 (680)
T ss_dssp CTTCCEEECTTCBSCCCEECTTTT---GGGTTSCCCEEECTTSCCCEEC----TTTTTTCTTCCEEECCSSCCEEECCS-
T ss_pred ccCCcEEECCCCchhhhhcchhhh---cccccCcCceEECCCCCCCeEC----hhhhhCCCCCCEEeCCCCcCccccCc-
Confidence 66777777766531 222211100 0011246667776655422211 11123567888888887754333332
Q ss_pred hHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCc
Q 002024 709 HLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNL 788 (979)
Q Consensus 709 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l 788 (979)
..+..+++|++|++++|.- ..+. +..+..+|+|+.|++.++.. ..+...+..+..+++|+.|++++|. +
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l-~~~~--------~~~~~~~~~L~~L~l~~n~l-~~~~~~p~~~~~l~~L~~L~Ls~N~-l 492 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKY-LQLT--------RNSFALVPSLQRLMLRRVAL-KNVDSSPSPFQPLRNLTILDLSNNN-I 492 (680)
T ss_dssp GGGTTCTTCCEEECCSCSE-EECC--------TTTTTTCTTCCEEECTTSCC-BCTTCSSCTTTTCTTCCEEECCSSC-C
T ss_pred ccccCcccccEEecCCCCc-ceeC--------hhhhhcCcccccchhccccc-cccccCCcccccCCCCCEEECCCCC-C
Confidence 3356678888888877652 2211 12245678999999988742 2222223345678999999999964 5
Q ss_pred ccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCE
Q 002024 789 TKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKT 868 (979)
Q Consensus 789 ~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~ 868 (979)
+.++ +..+.++++|++|+++++. +..++... .....+..+..+++|++|+++++ ++..+++ ..+..+++|++
T Consensus 493 ~~i~--~~~~~~l~~L~~L~Ls~N~-l~~~~~~~---~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~-~~~~~l~~L~~ 564 (680)
T 1ziw_A 493 ANIN--DDMLEGLEKLEILDLQHNN-LARLWKHA---NPGGPIYFLKGLSHLHILNLESN-GFDEIPV-EVFKDLFELKI 564 (680)
T ss_dssp CCCC--TTTTTTCTTCCEEECCSSC-CGGGGSTT---STTSCCCTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCE
T ss_pred CcCC--hhhhccccccCEEeCCCCC-ccccchhh---ccCCcchhhcCCCCCCEEECCCC-CCCCCCH-HHcccccCcce
Confidence 5553 4668899999999999975 33221100 00011234678999999999996 6777644 34688999999
Q ss_pred EEEecccccceeeccccccCCCCccceeeccccccccccCccccccccCCceeeccccceeeeccCCCc
Q 002024 869 LRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQFLIEFPALEMLTIAECPKI 937 (979)
Q Consensus 869 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~L 937 (979)
|+++++ +++.++.... ..+++|+.|+++++ .|+.++...+...+++|+.|+++++|-.
T Consensus 565 L~Ls~N-~l~~l~~~~~---------~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 565 IDLGLN-NLNTLPASVF---------NNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp EECCSS-CCCCCCTTTT---------TTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred eECCCC-CCCcCCHhHh---------CCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCcc
Confidence 999877 6777665421 15799999999996 5988876544335799999999996543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=300.13 Aligned_cols=494 Identities=18% Similarity=0.153 Sum_probs=269.2
Q ss_pred ccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCcc
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLS 429 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~ 429 (979)
+..++. ...+++++|++++|.++.++ .+.++++|++|++++|.+..+++..|.++++|++|+|++ .+....|..|.
T Consensus 19 l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 19 FYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp CSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred ccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 444443 33467999999999998776 466899999999999999999888899999999999999 45534457899
Q ss_pred CCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcccCcCcc--cchhhccCccccEEecCCCCCccccCcchhccCcCC-
Q 002024 430 FLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL- 504 (979)
Q Consensus 430 ~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~--lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L- 504 (979)
.+++|++|++++|.++.++ .++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...++.+++|
T Consensus 98 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 98 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCT
T ss_pred CccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccc
Confidence 9999999999999988884 48899999999999998875 68899999999999999975 555554447888888
Q ss_pred ---cEEEcccCccccccccccchhccccccccceecccccCCcC--CCCC-CCCCCCCeEEEEEcccccccccccccccc
Q 002024 505 ---EEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSI--LPSH-MPFQHLPNFTIAVRVSWEASDFILSTSSV 578 (979)
Q Consensus 505 ---~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 578 (979)
+.|++++|...... ...+... +|+.|+++.+.... ++.. ..+++++.+.+......... .......
T Consensus 177 ~~~~~L~l~~n~l~~~~-----~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~--~l~~~~~ 248 (570)
T 2z63_A 177 LLNLSLDLSLNPMNFIQ-----PGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG--NLEKFDK 248 (570)
T ss_dssp TCCCEEECTTCCCCEEC-----TTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS--SCEECCT
T ss_pred hhhhhcccCCCCceecC-----HHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCch--hhhhcch
Confidence 88898887553211 1223333 68888777642210 0000 23444444443321110000 0000000
Q ss_pred cccccccccccccccccchHHHHHHhcccceeecccccCccccc-cccccCCcccccEEEEeccCCceEEeecccccCCc
Q 002024 579 NKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDID-GDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPH 657 (979)
Q Consensus 579 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~ 657 (979)
..+ .... --.++.+.+.++....... ..+ ..+++|+.|++.++ .++.++. ..
T Consensus 249 ~~~----------------~~l~--~l~l~~l~l~~~~~~~~~~~~~~--~~l~~L~~L~l~~~-~l~~l~~------~~ 301 (570)
T 2z63_A 249 SAL----------------EGLC--NLTIEEFRLAYLDYYLDDIIDLF--NCLTNVSSFSLVSV-TIERVKD------FS 301 (570)
T ss_dssp TTT----------------GGGG--GSEEEEEEEEETTEEESCSTTTT--GGGTTCSEEEEESC-EECSCCB------CC
T ss_pred hhh----------------cccc--ccchhhhhhhcchhhhhhchhhh--cCcCcccEEEecCc-cchhhhh------hh
Confidence 000 0000 0123344443332111111 112 23566666666665 2222221 11
Q ss_pred ccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCC
Q 002024 658 ETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGL 737 (979)
Q Consensus 658 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~ 737 (979)
..+ +|++|.+.++... .++...+++|+.|++.++......+. ..+++|++|++++|.- ..+.
T Consensus 302 ~~~-~L~~L~l~~n~~~-------~l~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l-~~~~----- 363 (570)
T 2z63_A 302 YNF-GWQHLELVNCKFG-------QFPTLKLKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRNGL-SFKG----- 363 (570)
T ss_dssp SCC-CCSEEEEESCBCS-------SCCBCBCSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSSCC-BEEE-----
T ss_pred ccC-CccEEeeccCccc-------ccCcccccccCEEeCcCCcccccccc----ccCCCCCEEeCcCCcc-Cccc-----
Confidence 223 5666666544321 12223556666666666543332221 2356666666655431 1110
Q ss_pred CCccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHH
Q 002024 738 DNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEE 817 (979)
Q Consensus 738 ~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~ 817 (979)
..+.....+++|+.|+++++.. ..+.. .+..+++|+.|++.+|. +....+ ...+.++++|++|++++|....
T Consensus 364 -~~~~~~~~~~~L~~L~l~~n~l-~~~~~---~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~l~~- 435 (570)
T 2z63_A 364 -CCSQSDFGTTSLKYLDLSFNGV-ITMSS---NFLGLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHTHTRV- 435 (570)
T ss_dssp -EEEHHHHTCSCCCEEECCSCSE-EEEEE---EEETCTTCCEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTSCCEE-
T ss_pred -cccccccccCccCEEECCCCcc-ccccc---cccccCCCCEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCCcccc-
Confidence 0011123345666666655532 11111 12345566666666543 222222 2345555666666666553222
Q ss_pred HHhhcccccccCCCCCccccCCccEEEEecCCCce--EeechhHHhhccCCCEEEEecccccceeeccccccCCCCccce
Q 002024 818 IFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLV--NLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERI 895 (979)
Q Consensus 818 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~ 895 (979)
..|..+..+++|++|++++|. +. .++ ..+..+++|++|++++| .++.+.+.. ..
T Consensus 436 -----------~~~~~~~~l~~L~~L~l~~n~-l~~~~~p--~~~~~l~~L~~L~l~~n-~l~~~~~~~---------~~ 491 (570)
T 2z63_A 436 -----------AFNGIFNGLSSLEVLKMAGNS-FQENFLP--DIFTELRNLTFLDLSQC-QLEQLSPTA---------FN 491 (570)
T ss_dssp -----------CCTTTTTTCTTCCEEECTTCE-EGGGEEC--SCCTTCTTCCEEECTTS-CCCEECTTT---------TT
T ss_pred -----------cchhhhhcCCcCcEEECcCCc-Cccccch--hhhhcccCCCEEECCCC-ccccCChhh---------hh
Confidence 123445556666666666653 22 222 12355566666666655 233332210 11
Q ss_pred eeccccccccccCccccccccCCceeeccccceeeeccCC
Q 002024 896 EFPSLFEMELRNLDSLTCFCSGQFLIEFPALEMLTIAECP 935 (979)
Q Consensus 896 ~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 935 (979)
.+++|+.|++++| .++.++...+ ..+++|++|+++++|
T Consensus 492 ~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCc
Confidence 3556666666654 3555544322 225566666666643
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=7.1e-29 Score=305.75 Aligned_cols=502 Identities=19% Similarity=0.161 Sum_probs=284.3
Q ss_pred CCccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCC-CcccChhhhcCCCCccEEEecC-CcCCCCCc
Q 002024 351 NGLLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENS-PLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP 426 (979)
Q Consensus 351 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~ 426 (979)
..+..+|. ..+++++|++++|.++.++ .+.++++|++|++++|. ...+++..|+.+++|++|+|++ .+....|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 33445554 5577888888888887664 45688888888888884 4466677788888888888888 55545577
Q ss_pred CccCCcCCCEEEeCCCCCCC--Cc--cccCCcCCcEEEcccCcCccc--chhhccCccccEEecCCCCCccccCcchhcc
Q 002024 427 SLSFLVDLRTLRLEDCYLGD--LS--VIGELSNLEILSLCRSSIKEI--PETFCRLSHLWLLDLDHCRQLALIPHGVISQ 500 (979)
Q Consensus 427 ~~~~l~~L~~L~L~~~~l~~--l~--~i~~L~~L~~L~Ls~~~l~~l--p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~ 500 (979)
.|..+++|++|+|++|.++. +. .++++++|++|+|++|.+..+ +..++++++|++|++++|......+.. +..
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~ 170 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEP 170 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-ccc
Confidence 88888888888888888765 23 278888888888888887765 356888888888888886543333443 666
Q ss_pred C--cCCcEEEcccCccccccccccchhcccccc------ccceecccccCCcCCCC-----CCCCCCCCeEEEEEccccc
Q 002024 501 L--DKLEEFYMWNTFKNWDCETNAKVVELQALT------RLTNLMFHFPQNSILPS-----HMPFQHLPNFTIAVRVSWE 567 (979)
Q Consensus 501 L--~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~i~~~~~~~ 567 (979)
+ ++|+.|++++|....... ..+..+. +|+.|+++.+....... .....+++.|.+.......
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~-----~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~ 245 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVS-----VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCC-----CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred ccCCccceEECCCCccccccc-----cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence 6 788888888775532211 2222222 47888887764432111 1223445555443110000
Q ss_pred ccccccccccccccccccccccccccccchHHHHH-HhcccceeecccccCccccccccccCCcccccEEEEeccCCceE
Q 002024 568 ASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKD-LLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKY 646 (979)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 646 (979)
......+.. .....+.. ..++|+.|+++++.........+ ..+++|+.|+|+++ .+..
T Consensus 246 -------~~~~~~l~~-----------~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~n-~i~~ 304 (844)
T 3j0a_A 246 -------GFGFHNIKD-----------PDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF--ETLKDLKVLNLAYN-KINK 304 (844)
T ss_dssp -------SSSCSSSTT-----------GGGTTTTTTTTSCCCEEECTTCCCCEECSCCS--SSCCCCCEEEEESC-CCCE
T ss_pred -------cccccccCC-----------CChhhhhccccCCccEEECCCCcccccChhhh--hcCCCCCEEECCCC-cCCC
Confidence 000000000 00000000 13678888887665433222223 45788888888887 4444
Q ss_pred EeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccc
Q 002024 647 LLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCA 726 (979)
Q Consensus 647 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 726 (979)
+... .+..+++|++|+++++.- .... ......+++|+.|+++++. +..+++. .+..+++|+.|+++++.
T Consensus 305 ~~~~-----~~~~l~~L~~L~Ls~N~l-~~~~---~~~~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 305 IADE-----AFYGLDNLQVLNLSYNLL-GELY---SSNFYGLPKVAYIDLQKNH-IAIIQDQ-TFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp ECTT-----TTTTCSSCCEEEEESCCC-SCCC---SCSCSSCTTCCEEECCSCC-CCCCCSS-CSCSCCCCCEEEEETCC
T ss_pred CChH-----HhcCCCCCCEEECCCCCC-CccC---HHHhcCCCCCCEEECCCCC-CCccChh-hhcCCCCCCEEECCCCC
Confidence 4322 345677888888876542 2211 1123467888888888873 4554432 35567888888888764
Q ss_pred cccceecccCCCCccccccccccccEEeccccccccccccc-------------------CcccccccCccEEEeccCCC
Q 002024 727 SLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKG-------------------DSRLISLCSLKKLCLWACDN 787 (979)
Q Consensus 727 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~-------------------~~~~~~~~~L~~L~l~~C~~ 787 (979)
+..+. .+++|+.|.++++. ++.+... ...+..+++|+.|++++|.
T Consensus 374 -l~~i~-------------~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~- 437 (844)
T 3j0a_A 374 -LTTIH-------------FIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR- 437 (844)
T ss_dssp -SCCCS-------------SCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-
T ss_pred -CCccc-------------CCCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc-
Confidence 22221 14555555555442 1122111 0011245666666666643
Q ss_pred cccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCC
Q 002024 788 LTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLK 867 (979)
Q Consensus 788 l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~ 867 (979)
++.+.+ ...+..+++|+.|+++++..- ..+. ....+..+..+++|++|++++| +++.+++. .+..+++|+
T Consensus 438 l~~~~~-~~~~~~~~~L~~L~Ls~N~l~-~~~~------~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~ 507 (844)
T 3j0a_A 438 FSSCSG-DQTPSENPSLEQLFLGENMLQ-LAWE------TELCWDVFEGLSHLQVLYLNHN-YLNSLPPG-VFSHLTALR 507 (844)
T ss_dssp CCCCCS-SSSSCSCTTCCBCEEESCCCS-SSCC------SCCCSSCSSCBCCEECCCCCHH-HHTTCCTT-SSSSCCSCS
T ss_pred cccccc-ccccccCCccccccCCCCccc-cccc------cccchhhhcCcccccEEECCCC-cccccChh-Hccchhhhh
Confidence 332222 222344566666666664321 1000 0111234556667777777765 45554332 245667777
Q ss_pred EEEEecccccceeeccccccCCCCccceeeccccccccccCccccccccCCceeeccccceeeeccCC
Q 002024 868 TLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQFLIEFPALEMLTIAECP 935 (979)
Q Consensus 868 ~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 935 (979)
+|++++| +++.++... ..++|+.|+++++. |+.++... +++|+.|+++++|
T Consensus 508 ~L~Ls~N-~l~~l~~~~-----------~~~~L~~L~Ls~N~-l~~~~~~~----~~~L~~l~l~~Np 558 (844)
T 3j0a_A 508 GLSLNSN-RLTVLSHND-----------LPANLEILDISRNQ-LLAPNPDV----FVSLSVLDITHNK 558 (844)
T ss_dssp EEEEESC-CCSSCCCCC-----------CCSCCCEEEEEEEC-CCCCCSCC----CSSCCEEEEEEEC
T ss_pred eeECCCC-CCCccChhh-----------hhccccEEECCCCc-CCCCChhH----hCCcCEEEecCCC
Confidence 7777666 455544431 12667777777643 65554433 3567777776633
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5e-29 Score=293.65 Aligned_cols=476 Identities=17% Similarity=0.174 Sum_probs=283.5
Q ss_pred CccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCc-C
Q 002024 352 GLLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP-S 427 (979)
Q Consensus 352 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~-~ 427 (979)
.+..++. ...+.+++|++++|.++.++ .+.++++|++|++++|.+..+++..|..+++|++|+|++ .+. .+|. .
T Consensus 16 ~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~ 93 (549)
T 2z81_A 16 SFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSW 93 (549)
T ss_dssp CCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHH
T ss_pred ccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHH
Confidence 3444443 23478999999999999775 467999999999999999999988899999999999999 555 5554 5
Q ss_pred ccCCcCCCEEEeCCCCCCCC---ccccCCcCCcEEEcccCc-Ccccc-hhhccCccccEEecCCCCCccccCcchhccCc
Q 002024 428 LSFLVDLRTLRLEDCYLGDL---SVIGELSNLEILSLCRSS-IKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLD 502 (979)
Q Consensus 428 ~~~l~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~-l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~ 502 (979)
|+.+++|++|++++|.++.+ ..++++++|++|++++|. +..+| ..+.++++|++|++++|......|.. +..++
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~ 172 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIR 172 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCS
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccc
Confidence 99999999999999998754 568999999999999997 67786 58999999999999998755445665 89999
Q ss_pred CCcEEEcccCccccccccccchhccccccccceecccccCCcCCC-----CCCCCCCCCeEEEEEccccccccccccccc
Q 002024 503 KLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILP-----SHMPFQHLPNFTIAVRVSWEASDFILSTSS 577 (979)
Q Consensus 503 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~ 577 (979)
+|++|+++++.... .....+..+++|+.|+++++.....+ .....++|+.|.+.......
T Consensus 173 ~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---------- 237 (549)
T 2z81_A 173 DIHHLTLHLSESAF-----LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD---------- 237 (549)
T ss_dssp EEEEEEEECSBSTT-----HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH----------
T ss_pred cCceEecccCcccc-----cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch----------
Confidence 99999998875421 11122356899999999988776542 11345667777765321100
Q ss_pred ccccccccccccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeec-ccccCC
Q 002024 578 VNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNT-LERAAP 656 (979)
Q Consensus 578 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~-~~~~~~ 656 (979)
..+..+. ..+ ..+++|+.|++.+|. +..+..- ......
T Consensus 238 -----------------~~~~~l~---------------------~~~--~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~ 276 (549)
T 2z81_A 238 -----------------ESFNELL---------------------KLL--RYILELSEVEFDDCT-LNGLGDFNPSESDV 276 (549)
T ss_dssp -----------------HHHHHHH---------------------GGG--GGCTTCCEEEEESCE-EECCSCCCCCTTTC
T ss_pred -----------------hHHHHHH---------------------HHh--hhhcccccccccccc-ccccccccccchhh
Confidence 0000000 001 225566666666662 1111000 000011
Q ss_pred cccccccchhccccCccceeecccCccC--CCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecc
Q 002024 657 HETFHNLEELTIYSNHSFVEICHGQVLP--AGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDL 734 (979)
Q Consensus 657 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~ 734 (979)
...+++|+.|.+.++......... ..+ ...+++|+.|++++|. +..++ ...++++++|++|++++|.-...++..
T Consensus 277 ~~~l~~L~~L~l~~~~i~~~~~~~-~l~~~~~~~~~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 353 (549)
T 2z81_A 277 VSELGKVETVTIRRLHIPQFYLFY-DLSTVYSLLEKVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSENLMVEEYLKN 353 (549)
T ss_dssp CCCCTTCCEEEEESCBCSCGGGSC-CCCHHHHHSTTCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCSSCCCHHHHHH
T ss_pred hhhhcccccccccccccchhhhcc-cchhhhhhcccceEEEeccCc-cccCC-HHHHhcCccccEEEccCCccccccccc
Confidence 233455555555443211100000 000 0124677788887764 44443 333456778888887776533322110
Q ss_pred cCCCCccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccc
Q 002024 735 QGLDNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCIN 814 (979)
Q Consensus 735 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~ 814 (979)
......+++|+.|+++++. ++.+......+..+++|+.|++++| .++.+ |..+..+++|+.|++++|.
T Consensus 354 ------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l---p~~~~~~~~L~~L~Ls~N~- 421 (549)
T 2z81_A 354 ------SACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRN-TFHPM---PDSCQWPEKMRFLNLSSTG- 421 (549)
T ss_dssp ------HTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTC-CCCCC---CSCCCCCTTCCEEECTTSC-
T ss_pred ------hhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCC-CCccC---ChhhcccccccEEECCCCC-
Confidence 0012345667777776662 2222111111335666666666665 44444 3345556666666666653
Q ss_pred hHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccc
Q 002024 815 LEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAER 894 (979)
Q Consensus 815 l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~ 894 (979)
+..+ |... +++|++|++++| +++.+ ...+++|++|++++| +++.+|..
T Consensus 422 l~~l------------~~~~--~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip~~----------- 469 (549)
T 2z81_A 422 IRVV------------KTCI--PQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTLPDA----------- 469 (549)
T ss_dssp CSCC------------CTTS--CTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSCCCG-----------
T ss_pred cccc------------cchh--cCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcCCCc-----------
Confidence 2111 1111 245666666665 34433 134566666666665 44444331
Q ss_pred eeeccccccccccCccccccccCCceeeccccceeeeccCC
Q 002024 895 IEFPSLFEMELRNLDSLTCFCSGQFLIEFPALEMLTIAECP 935 (979)
Q Consensus 895 ~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 935 (979)
..+++|+.|++++| .++.++...+ ..+++|+.|++++||
T Consensus 470 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 470 SLFPVLLVMKISRN-QLKSVPDGIF-DRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGCTTCCEEECCSS-CCCCCCTTGG-GGCTTCCEEECCSSC
T ss_pred ccCccCCEEecCCC-ccCCcCHHHH-hcCcccCEEEecCCC
Confidence 13556666666664 3555544322 235666666666654
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.4e-28 Score=287.24 Aligned_cols=517 Identities=17% Similarity=0.117 Sum_probs=350.3
Q ss_pred ccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 365 LTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 365 l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
.+.++.++..++.+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|.
T Consensus 9 ~~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 9 NITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp TTEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CcEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 456777788888888643 36899999999999999988899999999999999 5664445779999999999999999
Q ss_pred CCCC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCcc-ccCcchhccCcCCcEEEcccCccccccc
Q 002024 444 LGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLA-LIPHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 444 l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~-~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
++.+ ..++++++|++|++++|.+..+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|....
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~--- 163 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS--- 163 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE---
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce---
Confidence 8877 468999999999999999998875 69999999999999976333 35766 8999999999999886532
Q ss_pred cccchhcccccccc----ceecccccCCcCCCCC-CCCCCCCeEEEEEcccccccccccccccccccccccccccccccc
Q 002024 520 TNAKVVELQALTRL----TNLMFHFPQNSILPSH-MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFS 594 (979)
Q Consensus 520 ~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 594 (979)
.....++.+++| +.|+++.+.....+.. ....+|++|.+..+... .
T Consensus 164 --~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~---------------------------~ 214 (570)
T 2z63_A 164 --IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDS---------------------------L 214 (570)
T ss_dssp --ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC---------------------------T
T ss_pred --ecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccccc---------------------------c
Confidence 222456667777 7888888877655543 33336777777542110 0
Q ss_pred cchHHHHHHhcccceeecccc--cCcccccccccc---CCcc--cccEEEEeccCCceEEeecccccCCcccccccchhc
Q 002024 595 PLLGWVKDLLKRSEFLFLHEF--IGVQDIDGDLIS---GGFT--ELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667 (979)
Q Consensus 595 ~~~~~~~~~~~~L~~L~L~~~--~~~~~~~~~~~~---~~l~--~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 667 (979)
.........+.+++.+.+... ..... ...+.. .+++ .++.+.+.++..+... .......+++|++|.
T Consensus 215 ~~~~~~~~~l~~l~~~~l~~~~~~~~~~-l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~-----~~~~~~~l~~L~~L~ 288 (570)
T 2z63_A 215 NVMKTCIQGLAGLEVHRLVLGEFRNEGN-LEKFDKSALEGLCNLTIEEFRLAYLDYYLDD-----IIDLFNCLTNVSSFS 288 (570)
T ss_dssp THHHHHHHTTTTCEEEEEEEEECCCCSS-CEECCTTTTGGGGGSEEEEEEEEETTEEESC-----STTTTGGGTTCSEEE
T ss_pred cchhhhhcCccccceeeeccccccCchh-hhhcchhhhccccccchhhhhhhcchhhhhh-----chhhhcCcCcccEEE
Confidence 011111122333433333211 00000 011111 1122 3455556555322211 112445678999999
Q ss_pred cccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCcccccccc
Q 002024 668 IYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFL 747 (979)
Q Consensus 668 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 747 (979)
+.++. +..++. ....+ +|++|++.+|.. ..++.. .+++|+.|+++++.....++ ...+
T Consensus 289 l~~~~-l~~l~~----~~~~~-~L~~L~l~~n~~-~~l~~~----~l~~L~~L~l~~n~~~~~~~-----------~~~~ 346 (570)
T 2z63_A 289 LVSVT-IERVKD----FSYNF-GWQHLELVNCKF-GQFPTL----KLKSLKRLTFTSNKGGNAFS-----------EVDL 346 (570)
T ss_dssp EESCE-ECSCCB----CCSCC-CCSEEEEESCBC-SSCCBC----BCSSCCEEEEESCBSCCBCC-----------CCBC
T ss_pred ecCcc-chhhhh----hhccC-CccEEeeccCcc-cccCcc----cccccCEEeCcCCccccccc-----------cccC
Confidence 98764 222211 12345 999999999864 455542 58999999999876433221 1458
Q ss_pred ccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccc
Q 002024 748 ASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRK 827 (979)
Q Consensus 748 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 827 (979)
++|+.|+++++.. ..+......+..+++|+.|++++|. +..+++ .+..+++|++|++++|......
T Consensus 347 ~~L~~L~l~~n~l-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~---~~~~l~~L~~L~l~~n~l~~~~--------- 412 (570)
T 2z63_A 347 PSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSS---NFLGLEQLEHLDFQHSNLKQMS--------- 412 (570)
T ss_dssp TTCCEEECCSSCC-BEEEEEEHHHHTCSCCCEEECCSCS-EEEEEE---EEETCTTCCEEECTTSEEESCT---------
T ss_pred CCCCEEeCcCCcc-CccccccccccccCccCEEECCCCc-cccccc---cccccCCCCEEEccCCcccccc---------
Confidence 9999999998742 2221111234578999999999975 444432 3888999999999997533211
Q ss_pred cCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEeccccc-ceeeccccccCCCCccceeeccccccccc
Q 002024 828 NSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAV-QEIVTDRERSKGASAERIEFPSLFEMELR 906 (979)
Q Consensus 828 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 906 (979)
.+..+..+++|++|++++| .+....+. .+..+++|++|++++|.-. ..+|.... .+++|+.|+++
T Consensus 413 --~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~p~~~~----------~l~~L~~L~l~ 478 (570)
T 2z63_A 413 --EFSVFLSLRNLIYLDISHT-HTRVAFNG-IFNGLSSLEVLKMAGNSFQENFLPDIFT----------ELRNLTFLDLS 478 (570)
T ss_dssp --TSCTTTTCTTCCEEECTTS-CCEECCTT-TTTTCTTCCEEECTTCEEGGGEECSCCT----------TCTTCCEEECT
T ss_pred --chhhhhcCCCCCEEeCcCC-cccccchh-hhhcCCcCcEEECcCCcCccccchhhhh----------cccCCCEEECC
Confidence 1245778999999999998 45554443 3678999999999999533 23443322 68999999999
Q ss_pred cCccccccccCCceeeccccceeeeccCCCceeecCCCc-cccccceEEcccCCcccCChhh--HHHHHHHh
Q 002024 907 NLDSLTCFCSGQFLIEFPALEMLTIAECPKIKTFGYGDQ-VTAKLNRVELQEGNRWTGNLND--TVKQLFHE 975 (979)
Q Consensus 907 ~c~~L~~l~~~~~~~~~~~L~~L~i~~C~~L~~l~~~~~-~~~~l~~~~~~~~~~w~~~~~~--~~~~~~~~ 975 (979)
+|. ++.+....+ ..+++|++|++++| +++.+|.... ..++++.+.+.+ +.|.+..+. .++.|++.
T Consensus 479 ~n~-l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~-N~~~~~~~~~~~~~~wl~~ 546 (570)
T 2z63_A 479 QCQ-LEQLSPTAF-NSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT-NPWDCSCPRIDYLSRWLNK 546 (570)
T ss_dssp TSC-CCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS-SCBCCCTTTTHHHHHHHHH
T ss_pred CCc-cccCChhhh-hcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecC-CcccCCCcchHHHHHHHHh
Confidence 976 777743332 34799999999998 7888886544 458899998754 345554431 23355544
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.7e-27 Score=275.43 Aligned_cols=459 Identities=15% Similarity=0.119 Sum_probs=278.8
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYL 444 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l 444 (979)
+++++++|.++.+|.... ++|+.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 579999999999996544 8999999999999999988899999999999999 55544478899999999999999999
Q ss_pred CCCccccCCcCCcEEEcccCcCcc--cchhhccCccccEEecCCCCCccccCcchhccCcCC--cEEEcccCcccccccc
Q 002024 445 GDLSVIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL--EEFYMWNTFKNWDCET 520 (979)
Q Consensus 445 ~~l~~i~~L~~L~~L~Ls~~~l~~--lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L--~~L~l~~~~~~~~~~~ 520 (979)
+.++.. .+++|++|++++|.+.. +|..++++++|++|++++|. +.. ..+..+++| +.|++++|.....
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~---~~~~~l~~L~L~~L~l~~n~l~~~--- 153 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK---SSVLPIAHLNISKVLLVLGETYGE--- 153 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG---GGGGGGTTSCEEEEEEEECTTTTS---
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch---hhccccccceeeEEEeeccccccc---
Confidence 888666 89999999999999886 57899999999999999975 333 226778888 9999988755111
Q ss_pred ccchhccccccc-cceecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHH
Q 002024 521 NAKVVELQALTR-LTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGW 599 (979)
Q Consensus 521 ~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 599 (979)
......+..++. .-.++++.+..........+.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~--------------------------------------------- 188 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT--------------------------------------------- 188 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTT---------------------------------------------
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhc---------------------------------------------
Confidence 111233333332 1122333332211111111111
Q ss_pred HHHHhcccceeeccccc------CccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCcc
Q 002024 600 VKDLLKRSEFLFLHEFI------GVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHS 673 (979)
Q Consensus 600 ~~~~~~~L~~L~L~~~~------~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 673 (979)
+++|+.|+++++. ......+.+ ..+++|+.|++.++. +... ...........++|++|.++++.-
T Consensus 189 ----l~~L~~L~l~~n~~~~~~~~~~~~~~~l--~~l~~L~~L~l~~~~-l~~~--~~~~~~~~~~~~~L~~L~l~~n~l 259 (520)
T 2z7x_B 189 ----VANLELSNIKCVLEDNKCSYFLSILAKL--QTNPKLSNLTLNNIE-TTWN--SFIRILQLVWHTTVWYFSISNVKL 259 (520)
T ss_dssp ----CSEEEECCEEECCSTTTTHHHHHHHHGG--GGCTTCCEEEEEEEE-EEHH--HHHHHHHHHHTSSCSEEEEEEEEE
T ss_pred ----ccceeeccccccccccccceeecchhhh--ccccchhhccccccc-cCHH--HHHHHHHHhhhCcccEEEeecccc
Confidence 1333333333221 011112222 336677777776652 1110 000000001123677777765532
Q ss_pred ceeecccCcc--CCCCCCCccEEeeeccCCcccccchhHHHhh---ccCceEeeeccccccceecccCCCCccccccccc
Q 002024 674 FVEICHGQVL--PAGSFNKLKRLDVKWCQNILNIAPIHLLRRL---KNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLA 748 (979)
Q Consensus 674 l~~~~~~~~~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 748 (979)
-...+.. .+ ..+.+++|+.+++.++.. .++. ..+..+ .+|+.|+++++.-.. +.. ...++
T Consensus 260 ~~~~p~~-~~~~~~~~l~~L~~l~l~~n~~--~~p~-~~~~~~~~~~~L~~L~l~~n~l~~-~~~----------~~~l~ 324 (520)
T 2z7x_B 260 QGQLDFR-DFDYSGTSLKALSIHQVVSDVF--GFPQ-SYIYEIFSNMNIKNFTVSGTRMVH-MLC----------PSKIS 324 (520)
T ss_dssp ESCCCCC-CCCCCSCCCCEEEEEEEEECCC--CSCT-HHHHHHHHTCCCSEEEEESSCCCC-CCC----------CSSCC
T ss_pred cCccccc-hhhcccccCceeEeccccccce--ecch-hhhhcccccCceeEEEcCCCcccc-ccc----------hhhCC
Confidence 2121111 11 115678888888888764 4442 233334 569999998875321 110 13467
Q ss_pred cccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhccccccc
Q 002024 749 SLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKN 828 (979)
Q Consensus 749 ~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~ 828 (979)
+|+.|+++++.-...+.. .+..+++|+.|++++|. ++.+...+..+..+++|++|++++|.....++
T Consensus 325 ~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~--------- 391 (520)
T 2z7x_B 325 PFLHLDFSNNLLTDTVFE---NCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNSVSYDEK--------- 391 (520)
T ss_dssp CCCEEECCSSCCCTTTTT---TCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG---------
T ss_pred cccEEEeECCccChhhhh---hhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCcCCcccc---------
Confidence 888888888743222221 23467888888888864 33221113557777888888888765332121
Q ss_pred CCCCCccccCCccEEEEecCCCceEeechhHHhhc-cCCCEEEEecccccceeeccccccCCCCccceeecccccccccc
Q 002024 829 SQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESL-VLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRN 907 (979)
Q Consensus 829 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 907 (979)
+..+..+++|++|++++|. ++... ...+ ++|++|++++| +++.+|.... .+++|+.|++++
T Consensus 392 --~~~~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~~L~~L~Ls~N-~l~~ip~~~~----------~l~~L~~L~L~~ 453 (520)
T 2z7x_B 392 --KGDCSWTKSLLSLNMSSNI-LTDTI----FRCLPPRIKVLDLHSN-KIKSIPKQVV----------KLEALQELNVAS 453 (520)
T ss_dssp --GCSCCCCTTCCEEECCSSC-CCGGG----GGSCCTTCCEEECCSS-CCCCCCGGGG----------GCTTCCEEECCS
T ss_pred --cchhccCccCCEEECcCCC-CCcch----hhhhcccCCEEECCCC-cccccchhhh----------cCCCCCEEECCC
Confidence 1235567778888888764 33211 1222 57777777777 4555554322 577777777777
Q ss_pred CccccccccCCceeeccccceeeeccCC
Q 002024 908 LDSLTCFCSGQFLIEFPALEMLTIAECP 935 (979)
Q Consensus 908 c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 935 (979)
| .++.+|...+ ..+++|++|+++++|
T Consensus 454 N-~l~~l~~~~~-~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 454 N-QLKSVPDGIF-DRLTSLQKIWLHTNP 479 (520)
T ss_dssp S-CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred C-cCCccCHHHh-ccCCcccEEECcCCC
Confidence 5 3777765422 336777777777764
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.4e-26 Score=275.15 Aligned_cols=506 Identities=19% Similarity=0.134 Sum_probs=261.4
Q ss_pred CCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEEE
Q 002024 363 EDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTLR 438 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L~ 438 (979)
.++++|++++|.++.++ .+.++++|++|+|++|.+..+++++|..+++|++|+|++ .+. .+| ..|..+++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEE
Confidence 46777777777777766 355777777777777777777777777777777777777 344 554 3567777777777
Q ss_pred eCCCCCCCCc--cccCCcCCcEEEcccCcCcc--cchhhccCccccEEecCCCCCccccCcchhccCcCCc----EEEcc
Q 002024 439 LEDCYLGDLS--VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLE----EFYMW 510 (979)
Q Consensus 439 L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~--lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~----~L~l~ 510 (979)
|++|+++.++ .++++++|++|++++|.+.. +|..++++++|++|++++|. +..++...+..+.+++ .++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhhhhhhhhcc
Confidence 7777777663 46777777777777777663 45667777777777777754 4444433355444443 34444
Q ss_pred cCccccccccccchhccccccccceecccccCCcC-C-CC-CCCCCCCCeEEEEEcccccc---cccccccccccccccc
Q 002024 511 NTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSI-L-PS-HMPFQHLPNFTIAVRVSWEA---SDFILSTSSVNKYSTR 584 (979)
Q Consensus 511 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~-~~-~~~~~~L~~L~i~~~~~~~~---~~~~~~~~~~~~~~~~ 584 (979)
.+...... ........+..+.+..+.... . +. ...+..++...+........ ................
T Consensus 210 ~n~l~~i~------~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 210 LNPMNFIQ------PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp TCCCCEEC------TTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred cCcccccC------cccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 43221100 111111222333333221100 0 00 01223333333222111000 0000000000000000
Q ss_pred ccc--ccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccc
Q 002024 585 MIL--SHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHN 662 (979)
Q Consensus 585 l~~--~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 662 (979)
... ................+.+++.+.+.+..... ...+ .....|+.|++.++. +..+ ....++.
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~--~~~~~L~~L~l~~~~-~~~~--------~~~~l~~ 350 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDF--SYNFGWQHLELVNCK-FGQF--------PTLKLKS 350 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGG--GSCCCCSEEEEESCE-ESSC--------CCCBCTT
T ss_pred hhhhhhhhcccccchhhhhhhhccccccccccccccc--cccc--ccchhhhhhhccccc-ccCc--------Ccccchh
Confidence 000 00000000000001122344444443332111 1111 224556666666552 1111 1223445
Q ss_pred cchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccc
Q 002024 663 LEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQ 742 (979)
Q Consensus 663 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~ 742 (979)
|+.+.+.+..... .+....+++|+.|+++++..............+.+|+.+++..+..... ..
T Consensus 351 L~~l~l~~n~~~~------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~----------~~ 414 (635)
T 4g8a_A 351 LKRLTFTSNKGGN------AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM----------SS 414 (635)
T ss_dssp CCEEEEESCCSCC------BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE----------CS
T ss_pred hhhcccccccCCC------Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc----------cc
Confidence 5555554432211 2223356777777777654322222222344566777777665432211 11
Q ss_pred cccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhc
Q 002024 743 ETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKM 822 (979)
Q Consensus 743 ~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~ 822 (979)
.+..+++|+.+.+..+......... .+..+++++.++++.+. +.... +..+..+++|+.|+++++.....+
T Consensus 415 ~~~~l~~L~~l~l~~~~~~~~~~~~--~~~~l~~l~~l~ls~n~-l~~~~--~~~~~~~~~L~~L~Ls~N~~~~~~---- 485 (635)
T 4g8a_A 415 NFLGLEQLEHLDFQHSNLKQMSEFS--VFLSLRNLIYLDISHTH-TRVAF--NGIFNGLSSLEVLKMAGNSFQENF---- 485 (635)
T ss_dssp CCTTCTTCCEEECTTSEEESTTSSC--TTTTCTTCCEEECTTSC-CEECC--TTTTTTCTTCCEEECTTCEEGGGE----
T ss_pred cccccccccchhhhhcccccccccc--ccccccccccccccccc-ccccc--ccccccchhhhhhhhhhccccccc----
Confidence 2344677787777766443322111 23467778888887754 33322 456777888888888887655432
Q ss_pred ccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccc
Q 002024 823 EMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFE 902 (979)
Q Consensus 823 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~ 902 (979)
.|..+..+++|++|++++| +++.+++. .+..+++|++|++++| +++.++... ...+++|+.
T Consensus 486 -------~~~~~~~l~~L~~L~Ls~N-~L~~l~~~-~f~~l~~L~~L~Ls~N-~l~~l~~~~---------~~~l~~L~~ 546 (635)
T 4g8a_A 486 -------LPDIFTELRNLTFLDLSQC-QLEQLSPT-AFNSLSSLQVLNMSHN-NFFSLDTFP---------YKCLNSLQV 546 (635)
T ss_dssp -------ECSCCTTCTTCCEEECTTS-CCCEECTT-TTTTCTTCCEEECTTS-CCCBCCCGG---------GTTCTTCCE
T ss_pred -------CchhhhhccccCEEECCCC-ccCCcChH-HHcCCCCCCEEECCCC-cCCCCChhH---------HhCCCCCCE
Confidence 2556777888888888886 67776554 3567788888888877 565554431 114678888
Q ss_pred cccccCccccccccCCceeeccccceeeeccC
Q 002024 903 MELRNLDSLTCFCSGQFLIEFPALEMLTIAEC 934 (979)
Q Consensus 903 L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C 934 (979)
|+++++. |+.++...+....++|+.|+++++
T Consensus 547 L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 547 LDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EECTTSC-CCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EECCCCc-CCCCCHHHHHhhhCcCCEEEeeCC
Confidence 8888744 777765544332357888888774
No 20
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=7.9e-27 Score=287.49 Aligned_cols=460 Identities=15% Similarity=0.107 Sum_probs=283.0
Q ss_pred CCCCcCCccEEEccCCc-ccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcC--ccCC
Q 002024 358 IRDTFEDLTGISLMSNY-IHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPS--LSFL 431 (979)
Q Consensus 358 ~~~~~~~l~~l~l~~~~-~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~--~~~l 431 (979)
....+..+++|++++|. +..++ .+.++++|++|+|++|.+..+++..|..+++|++|+|++ .+....|.. +..+
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 45678899999999994 44563 466999999999999999999888899999999999999 555445654 8999
Q ss_pred cCCCEEEeCCCCCCCC---ccccCCcCCcEEEcccCcCccc-chhhccC--ccccEEecCCCCCccccCcchhccCcC--
Q 002024 432 VDLRTLRLEDCYLGDL---SVIGELSNLEILSLCRSSIKEI-PETFCRL--SHLWLLDLDHCRQLALIPHGVISQLDK-- 503 (979)
Q Consensus 432 ~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L--~~L~~L~l~~c~~~~~~p~~~l~~L~~-- 503 (979)
++|++|+|++|.++.+ +.++++++|++|++++|.+..+ |..+..+ ++|+.|++++|......|.. ++.+.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~ 201 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPF 201 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCcc
Confidence 9999999999998776 4689999999999999998754 6778877 89999999998766656654 555554
Q ss_pred ----CcEEEcccCccccccccc-------------------------------cchhcccc--ccccceecccccCCcCC
Q 002024 504 ----LEEFYMWNTFKNWDCETN-------------------------------AKVVELQA--LTRLTNLMFHFPQNSIL 546 (979)
Q Consensus 504 ----L~~L~l~~~~~~~~~~~~-------------------------------~~~~~l~~--l~~L~~L~l~~~~~~~~ 546 (979)
|+.|++++|......... .....+.. .++|+.|+++.+.....
T Consensus 202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~ 281 (844)
T 3j0a_A 202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281 (844)
T ss_dssp TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence 999999988432211100 00001111 14555555555544433
Q ss_pred CCC--CCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCccccccc
Q 002024 547 PSH--MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGD 624 (979)
Q Consensus 547 ~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 624 (979)
+.. ..+++|+.|++..+..... .......+++|++|+++++.........
T Consensus 282 ~~~~~~~l~~L~~L~L~~n~i~~~----------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 282 NSRVFETLKDLKVLNLAYNKINKI----------------------------ADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp CSCCSSSCCCCCEEEEESCCCCEE----------------------------CTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred ChhhhhcCCCCCEEECCCCcCCCC----------------------------ChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 222 4455555555543321100 0000012355666666554322111222
Q ss_pred cccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCccc
Q 002024 625 LISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILN 704 (979)
Q Consensus 625 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 704 (979)
+ ..+++|+.|+++++ .+..++.. ....+++|++|+++++. ++. ...+++|+.|.++++. +..
T Consensus 334 ~--~~l~~L~~L~L~~N-~i~~~~~~-----~~~~l~~L~~L~Ls~N~-l~~--------i~~~~~L~~L~l~~N~-l~~ 395 (844)
T 3j0a_A 334 F--YGLPKVAYIDLQKN-HIAIIQDQ-----TFKFLEKLQTLDLRDNA-LTT--------IHFIPSIPDIFLSGNK-LVT 395 (844)
T ss_dssp C--SSCTTCCEEECCSC-CCCCCCSS-----CSCSCCCCCEEEEETCC-SCC--------CSSCCSCSEEEEESCC-CCC
T ss_pred h--cCCCCCCEEECCCC-CCCccChh-----hhcCCCCCCEEECCCCC-CCc--------ccCCCCcchhccCCCC-ccc
Confidence 2 33566666666665 33332211 23345566666665432 111 1125566666666553 233
Q ss_pred ccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEecccccccccccccCcccccccCccEEEecc
Q 002024 705 IAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWA 784 (979)
Q Consensus 705 ~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~ 784 (979)
++.. ..+++.++++++. +..+.. ......+++|+.|+++++. ++.+... .....+++|+.|++++
T Consensus 396 l~~~-----~~~l~~L~ls~N~-l~~l~~-------~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~~~~~L~~L~Ls~ 460 (844)
T 3j0a_A 396 LPKI-----NLTANLIHLSENR-LENLDI-------LYFLLRVPHLQILILNQNR-FSSCSGD-QTPSENPSLEQLFLGE 460 (844)
T ss_dssp CCCC-----CTTCCEEECCSCC-CCSSTT-------HHHHTTCTTCCEEEEESCC-CCCCCSS-SSSCSCTTCCBCEEES
T ss_pred cccc-----ccccceeecccCc-cccCch-------hhhhhcCCccceeeCCCCc-ccccccc-cccccCCccccccCCC
Confidence 3321 3455555555432 111100 0012357888999988874 2222111 1223578899999988
Q ss_pred CCCcccccC---CChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHh
Q 002024 785 CDNLTKLFS---HNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAE 861 (979)
Q Consensus 785 C~~l~~l~~---~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 861 (979)
+. +....+ .+..+.++++|+.|++++| .+..+ .|..+..+++|++|+++++ +++.+++..+
T Consensus 461 N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~-----------~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~-- 524 (844)
T 3j0a_A 461 NM-LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSL-----------PPGVFSHLTALRGLSLNSN-RLTVLSHNDL-- 524 (844)
T ss_dssp CC-CSSSCCSCCCSSCSSCBCCEECCCCCHH-HHTTC-----------CTTSSSSCCSCSEEEEESC-CCSSCCCCCC--
T ss_pred Cc-cccccccccchhhhcCcccccEEECCCC-ccccc-----------ChhHccchhhhheeECCCC-CCCccChhhh--
Confidence 64 322111 0345778889999999886 33322 2455778899999999986 6777655432
Q ss_pred hccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCc
Q 002024 862 SLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLD 909 (979)
Q Consensus 862 ~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 909 (979)
.++|+.|+++++ +++..++. .+++|+.|+++++|
T Consensus 525 -~~~L~~L~Ls~N-~l~~~~~~------------~~~~L~~l~l~~Np 558 (844)
T 3j0a_A 525 -PANLEILDISRN-QLLAPNPD------------VFVSLSVLDITHNK 558 (844)
T ss_dssp -CSCCCEEEEEEE-CCCCCCSC------------CCSSCCEEEEEEEC
T ss_pred -hccccEEECCCC-cCCCCChh------------HhCCcCEEEecCCC
Confidence 278999999887 45544333 35678888888755
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=4.9e-27 Score=274.42 Aligned_cols=456 Identities=15% Similarity=0.107 Sum_probs=304.5
Q ss_pred eEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEccc
Q 002024 388 QVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCR 463 (979)
Q Consensus 388 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~ 463 (979)
++|++++|.+..+|..++ ++|++|+|++ .+. .++ ..|..+++|++|+|++|.++.+ ..++++++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 679999999999997653 8999999999 555 554 6899999999999999999888 4799999999999999
Q ss_pred CcCcccchhhccCccccEEecCCCCCcc-ccCcchhccCcCCcEEEcccCccccccccccchhcccccccc--ceecccc
Q 002024 464 SSIKEIPETFCRLSHLWLLDLDHCRQLA-LIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRL--TNLMFHF 540 (979)
Q Consensus 464 ~~l~~lp~~i~~L~~L~~L~l~~c~~~~-~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l~~ 540 (979)
|.+..+|.. .+++|++|++++|.... .+|.. ++++++|++|++++|.... ..+..+++| +.|++++
T Consensus 79 N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~--------~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 79 NKLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK--------SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp SCCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG--------GGGGGGTTSCEEEEEEEE
T ss_pred CceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch--------hhccccccceeeEEEeec
Confidence 999999977 89999999999976433 35555 8999999999999886531 345556666 8888887
Q ss_pred cCC--cCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCc
Q 002024 541 PQN--SILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGV 618 (979)
Q Consensus 541 ~~~--~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~ 618 (979)
+.. ..... ..+..|+. +...+++.++...
T Consensus 148 n~l~~~~~~~-~~l~~l~~------------------------------------------------~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 148 GETYGEKEDP-EGLQDFNT------------------------------------------------ESLHIVFPTNKEF 178 (520)
T ss_dssp CTTTTSSCCT-TTTTTCCE------------------------------------------------EEEEEECCSSSCC
T ss_pred cccccccccc-cccccccc------------------------------------------------ceEEEEeccCcch
Confidence 765 11110 12222221 0111222222222
Q ss_pred cccccccccCCcccccEEEEeccCC---ceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEe
Q 002024 619 QDIDGDLISGGFTELKCLTLQSCDN---VKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLD 695 (979)
Q Consensus 619 ~~~~~~~~~~~l~~L~~L~L~~~~~---l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~ 695 (979)
. ..+......+++|+.|++++|.. ...+.. .......+++|+.|.+.++.--.....+ ..+....++|++|+
T Consensus 179 ~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 179 H-FILDVSVKTVANLELSNIKCVLEDNKCSYFLS---ILAKLQTNPKLSNLTLNNIETTWNSFIR-ILQLVWHTTVWYFS 253 (520)
T ss_dssp C-CCCCCCCTTCSEEEECCEEECCSTTTTHHHHH---HHHGGGGCTTCCEEEEEEEEEEHHHHHH-HHHHHHTSSCSEEE
T ss_pred h-hhhhhhhhcccceeeccccccccccccceeec---chhhhccccchhhccccccccCHHHHHH-HHHHhhhCcccEEE
Confidence 1 12222224588999999988741 111100 0113455678888888654321110000 01111245889999
Q ss_pred eeccCCcccccchhHH-----HhhccCceEeeeccccccceecccCCCCcccccccc---ccccEEeccccccccccccc
Q 002024 696 VKWCQNILNIAPIHLL-----RRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFL---ASLKEIELIALPEMTHIWKG 767 (979)
Q Consensus 696 l~~c~~l~~~~~~~~~-----~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~i~~~ 767 (979)
+++|.....++.. + ..+++|+.++++++.. .++. .....+ ++|+.|+++++.. ..+..
T Consensus 254 l~~n~l~~~~p~~--~~~~~~~~l~~L~~l~l~~n~~--~~p~--------~~~~~~~~~~~L~~L~l~~n~l-~~~~~- 319 (520)
T 2z7x_B 254 ISNVKLQGQLDFR--DFDYSGTSLKALSIHQVVSDVF--GFPQ--------SYIYEIFSNMNIKNFTVSGTRM-VHMLC- 319 (520)
T ss_dssp EEEEEEESCCCCC--CCCCCSCCCCEEEEEEEEECCC--CSCT--------HHHHHHHHTCCCSEEEEESSCC-CCCCC-
T ss_pred eecccccCccccc--hhhcccccCceeEeccccccce--ecch--------hhhhcccccCceeEEEcCCCcc-ccccc-
Confidence 9888533233321 2 4577788888876543 2221 011111 4699999988753 22211
Q ss_pred CcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchH--HHHhhcccccccCCCCCccccCCccEEEE
Q 002024 768 DSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLE--EIFGKMEMMRKNSQPTTSQGLQNLTTINI 845 (979)
Q Consensus 768 ~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 845 (979)
...+++|+.|++++|. ++... +..+..+++|++|++++|.... .+ |..+..+++|++|++
T Consensus 320 ---~~~l~~L~~L~Ls~n~-l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~------------~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 320 ---PSKISPFLHLDFSNNL-LTDTV--FENCGHLTELETLILQMNQLKELSKI------------AEMTTQMKSLQQLDI 381 (520)
T ss_dssp ---CSSCCCCCEEECCSSC-CCTTT--TTTCCCCSSCCEEECCSSCCCBHHHH------------HHHHTTCTTCCEEEC
T ss_pred ---hhhCCcccEEEeECCc-cChhh--hhhhccCCCCCEEEccCCccCccccc------------hHHHhhCCCCCEEEC
Confidence 1378999999999975 44322 4567899999999999975432 33 344678899999999
Q ss_pred ecCCCceE-eechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCccccccccCCceeecc
Q 002024 846 QSCSKLVN-LFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQFLIEFP 924 (979)
Q Consensus 846 ~~c~~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~ 924 (979)
++| .+.. + +...+..+++|++|++++|.--...+.. ..++|+.|++++| +++.+|...+ .++
T Consensus 382 s~N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------l~~~L~~L~Ls~N-~l~~ip~~~~--~l~ 444 (520)
T 2z7x_B 382 SQN-SVSYDE-KKGDCSWTKSLLSLNMSSNILTDTIFRC------------LPPRIKVLDLHSN-KIKSIPKQVV--KLE 444 (520)
T ss_dssp CSS-CCBCCG-GGCSCCCCTTCCEEECCSSCCCGGGGGS------------CCTTCCEEECCSS-CCCCCCGGGG--GCT
T ss_pred CCC-cCCccc-ccchhccCccCCEEECcCCCCCcchhhh------------hcccCCEEECCCC-cccccchhhh--cCC
Confidence 997 4555 4 3333567899999999998532333221 2379999999997 4889987654 589
Q ss_pred ccceeeeccCCCceeecCCCc-cccccceEEcccCCcccC
Q 002024 925 ALEMLTIAECPKIKTFGYGDQ-VTAKLNRVELQEGNRWTG 963 (979)
Q Consensus 925 ~L~~L~i~~C~~L~~l~~~~~-~~~~l~~~~~~~~~~w~~ 963 (979)
+|++|++++| +++.+|.... ..+.++++.+.+ +.|..
T Consensus 445 ~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~-N~~~c 482 (520)
T 2z7x_B 445 ALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHT-NPWDC 482 (520)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS-SCBCC
T ss_pred CCCEEECCCC-cCCccCHHHhccCCcccEEECcC-CCCcc
Confidence 9999999998 8999998633 457888888754 44544
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=8.8e-26 Score=268.51 Aligned_cols=171 Identities=16% Similarity=0.244 Sum_probs=97.0
Q ss_pred CCccEEEccCCccc-ccC-CcCCCCCceEEEccCCCC-------------------------------------------
Q 002024 363 EDLTGISLMSNYIH-EVP-AMLECPKLQVLLLQENSP------------------------------------------- 397 (979)
Q Consensus 363 ~~l~~l~l~~~~~~-~~~-~~~~~~~L~~L~L~~~~~------------------------------------------- 397 (979)
..++.|+++++.+. .+| .+.++++|++|+|++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 46888999999887 565 455899999999988854
Q ss_pred -----------------------------------cccChhhhcCCCCccEEEecC-CcCCC-----------------C
Q 002024 398 -----------------------------------LVIPDKFFQGMKDLKVLDLSY-ILPLS-----------------L 424 (979)
Q Consensus 398 -----------------------------------~~~~~~~~~~l~~L~~L~L~~-~~~~~-----------------~ 424 (979)
..+|. .|+++++|++|+|++ .+... +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCH-HHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 12332 255556666666665 33321 5
Q ss_pred CcCcc--CCcCCCEEEeCCCCCCC-C-ccccCCcCCcEEEcccCc-Cc--ccchhhccC------ccccEEecCCCCCcc
Q 002024 425 PPSLS--FLVDLRTLRLEDCYLGD-L-SVIGELSNLEILSLCRSS-IK--EIPETFCRL------SHLWLLDLDHCRQLA 491 (979)
Q Consensus 425 p~~~~--~l~~L~~L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~-l~--~lp~~i~~L------~~L~~L~l~~c~~~~ 491 (979)
|..++ .+++|++|+|++|.+.. + ..++++++|++|++++|. +. .+|..++++ ++|++|++++|. +.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~ 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CC
Confidence 55555 56666666666655332 2 345556666666666655 55 255555554 566666665543 33
Q ss_pred ccCc--chhccCcCCcEEEcccCccccccccccchhccccccccceecccccC
Q 002024 492 LIPH--GVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 492 ~~p~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
.+|. . ++++++|++|++++|..... . ..+..+++|+.|+++++.
T Consensus 319 ~ip~~~~-l~~l~~L~~L~L~~N~l~g~-----i-p~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 319 TFPVETS-LQKMKKLGMLECLYNQLEGK-----L-PAFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCCCHHH-HTTCTTCCEEECCSCCCEEE-----C-CCCEEEEEESEEECCSSE
T ss_pred ccCchhh-hccCCCCCEEeCcCCcCccc-----h-hhhCCCCCCCEEECCCCc
Confidence 5554 3 55556666666555543211 1 144455555555555443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1e-25 Score=265.42 Aligned_cols=457 Identities=17% Similarity=0.135 Sum_probs=267.7
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDC 442 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~ 442 (979)
..++++++++.++.+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|
T Consensus 32 ~~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 3488999999999998644 38999999999999999988899999999999999 566445788999999999999999
Q ss_pred CCCCCccccCCcCCcEEEcccCcCcccc--hhhccCccccEEecCCCCCccccCcchhccCcCC--cEEEcccCcccccc
Q 002024 443 YLGDLSVIGELSNLEILSLCRSSIKEIP--ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL--EEFYMWNTFKNWDC 518 (979)
Q Consensus 443 ~l~~l~~i~~L~~L~~L~Ls~~~l~~lp--~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L--~~L~l~~~~~~~~~ 518 (979)
.++.++.. .+++|++|++++|.+..+| ..++++++|++|++++|. +.... +..+++| ++|++++|.....
T Consensus 111 ~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l~~~- 184 (562)
T 3a79_B 111 RLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSYHIK- 184 (562)
T ss_dssp CCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSCCCC-
T ss_pred cCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeeccccccc-
Confidence 99988666 8999999999999998764 789999999999999965 33322 5556666 9999988755110
Q ss_pred ccccchhcccccccccee--cccccCCcCCCCC---CCCCCCCeEEEEEccccccccccccccccccccccccccccccc
Q 002024 519 ETNAKVVELQALTRLTNL--MFHFPQNSILPSH---MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRF 593 (979)
Q Consensus 519 ~~~~~~~~l~~l~~L~~L--~l~~~~~~~~~~~---~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 593 (979)
......+..++. +.+ +++.+........ ..+
T Consensus 185 --~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l----------------------------------------- 220 (562)
T 3a79_B 185 --GGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNAL----------------------------------------- 220 (562)
T ss_dssp --SSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSE-----------------------------------------
T ss_pred --ccCcccccccCc-ceEEEEecCccchhhhhhhccccc-----------------------------------------
Confidence 111123333321 222 3333222111000 122
Q ss_pred ccchHHHHHHhcccceeeccccc----CccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccc
Q 002024 594 SPLLGWVKDLLKRSEFLFLHEFI----GVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIY 669 (979)
Q Consensus 594 ~~~~~~~~~~~~~L~~L~L~~~~----~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 669 (979)
++|+.++++++. ......+.+ ..++.|+.|++.++. +... ...........++|++|+++
T Consensus 221 -----------~~L~~L~l~~n~~~~~~l~~~~~~l--~~l~~L~~L~L~~~~-l~~~--~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 221 -----------GHLQLSNIKLNDENCQRLMTFLSEL--TRGPTLLNVTLQHIE-TTWK--CSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp -----------EEEEEEEEECCSTTHHHHHHHHHHH--HSCSSCEEEEEEEEE-ECHH--HHHHHHHHHTTSSEEEEEEE
T ss_pred -----------ceEEEecccccccccchHHHHHHHH--hccCcceEEEecCCc-CcHH--HHHHHHHhhhcccccEEEEe
Confidence 333333333221 000111111 224555555555441 1000 00000000112256666665
Q ss_pred cCccceeecccCccC--CCCCCCccEEeeeccCCcccccchhHHHhh---ccCceEeeeccccccceecccCCCCccccc
Q 002024 670 SNHSFVEICHGQVLP--AGSFNKLKRLDVKWCQNILNIAPIHLLRRL---KNLEYCSVFFCASLLHVFDLQGLDNVNQET 744 (979)
Q Consensus 670 ~~~~l~~~~~~~~~~--~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~ 744 (979)
++.-...++.. .+. ...+++|+.+++..+.. .+ +..++..+ .+|+.|+++++.-..... .
T Consensus 285 ~n~l~~~ip~~-~~~~~~~~L~~L~~~~~~~~~~--~~-p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-----------~ 349 (562)
T 3a79_B 285 NLTITERIDRE-EFTYSETALKSLMIEHVKNQVF--LF-SKEALYSVFAEMNIKMLSISDTPFIHMVC-----------P 349 (562)
T ss_dssp EEEECSCCCCC-CCCCCSCSCCEEEEEEEEECCC--SS-CHHHHHHHHHTCCCSEEEEESSCCCCCCC-----------C
T ss_pred ccEeeccccch-hhhcccccchheehhhccccee--ec-ChhhhhhhhccCcceEEEccCCCcccccC-----------c
Confidence 54321111110 000 02233333344443322 22 22222222 568888888765321110 1
Q ss_pred cccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhccc
Q 002024 745 KFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEM 824 (979)
Q Consensus 745 ~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 824 (979)
..+++|+.|+++++.-...+. ..+..+++|+.|++++| .++.+...+..+.++++|+.|++++|.....+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~------ 419 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVF---QGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHA------ 419 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTT---TTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCC------
T ss_pred cCCCCceEEECCCCccccchh---hhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCcc------
Confidence 346788888888774322122 12346788888888885 45443211344677788888888876533211
Q ss_pred ccccCCCCCccccCCccEEEEecCCCceEeechhHHhhc-cCCCEEEEecccccceeeccccccCCCCccceeecccccc
Q 002024 825 MRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESL-VLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEM 903 (979)
Q Consensus 825 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L 903 (979)
.+..+..+++|++|++++|. ++.. ....+ ++|++|++++| +++.+|.... .+++|+.|
T Consensus 420 -----~~~~~~~l~~L~~L~l~~n~-l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~~~~----------~l~~L~~L 478 (562)
T 3a79_B 420 -----YDRTCAWAESILVLNLSSNM-LTGS----VFRCLPPKVKVLDLHNN-RIMSIPKDVT----------HLQALQEL 478 (562)
T ss_dssp -----SSCCCCCCTTCCEEECCSSC-CCGG----GGSSCCTTCSEEECCSS-CCCCCCTTTT----------SSCCCSEE
T ss_pred -----ChhhhcCcccCCEEECCCCC-CCcc----hhhhhcCcCCEEECCCC-cCcccChhhc----------CCCCCCEE
Confidence 02235667888888888864 3321 12333 57888888777 5666655422 57788888
Q ss_pred ccccCccccccccCCceeeccccceeeeccCC
Q 002024 904 ELRNLDSLTCFCSGQFLIEFPALEMLTIAECP 935 (979)
Q Consensus 904 ~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~C~ 935 (979)
+++++. |+.+|...+ ..+++|+.|+++++|
T Consensus 479 ~L~~N~-l~~l~~~~~-~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 479 NVASNQ-LKSVPDGVF-DRLTSLQYIWLHDNP 508 (562)
T ss_dssp ECCSSC-CCCCCTTST-TTCTTCCCEECCSCC
T ss_pred ECCCCC-CCCCCHHHH-hcCCCCCEEEecCCC
Confidence 887744 777776522 346788888888765
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=6.2e-26 Score=273.46 Aligned_cols=89 Identities=12% Similarity=0.064 Sum_probs=45.7
Q ss_pred ccc-ccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeeccc-CccCCCCCCCccEEeeeccCCcccccc
Q 002024 630 FTE-LKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHG-QVLPAGSFNKLKRLDVKWCQNILNIAP 707 (979)
Q Consensus 630 l~~-L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~~~~ 707 (979)
+++ |+.|+|++|. ++.++.. ......++|+.|.++++......+.- .....-..++|+.|++++|. +..+ +
T Consensus 617 l~~~L~~L~Ls~N~-L~~lp~~----~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~-L~~l-p 689 (876)
T 4ecn_A 617 FTDQVEGLGFSHNK-LKYIPNI----FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKF-P 689 (876)
T ss_dssp ECTTCCEEECCSSC-CCSCCSC----CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC-CCSC-C
T ss_pred ccccCCEEECcCCC-CCcCchh----hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc-CCcc-C
Confidence 556 6777776663 3333211 01111234666666654322111000 00111134588888888875 3444 3
Q ss_pred hhHHHhhccCceEeeecc
Q 002024 708 IHLLRRLKNLEYCSVFFC 725 (979)
Q Consensus 708 ~~~~~~l~~L~~L~l~~c 725 (979)
...+..+++|+.|++++|
T Consensus 690 ~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 690 TELFATGSPISTIILSNN 707 (876)
T ss_dssp HHHHHTTCCCSEEECCSC
T ss_pred HHHHccCCCCCEEECCCC
Confidence 444567888888888876
No 25
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.93 E-value=1.3e-24 Score=262.09 Aligned_cols=392 Identities=15% Similarity=0.140 Sum_probs=213.7
Q ss_pred CCccEEEccCCccc-ccC-CcCCCCCceEEEc-cCCCCc-----------------------------------------
Q 002024 363 EDLTGISLMSNYIH-EVP-AMLECPKLQVLLL-QENSPL----------------------------------------- 398 (979)
Q Consensus 363 ~~l~~l~l~~~~~~-~~~-~~~~~~~L~~L~L-~~~~~~----------------------------------------- 398 (979)
..+..|+++++.+. .+| .+.++++|+.|+| ++|.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 56888999999887 566 4568999999999 666321
Q ss_pred ------------------------------------ccChhhhcCCCCccEEEecC-CcCC-----------------CC
Q 002024 399 ------------------------------------VIPDKFFQGMKDLKVLDLSY-ILPL-----------------SL 424 (979)
Q Consensus 399 ------------------------------------~~~~~~~~~l~~L~~L~L~~-~~~~-----------------~~ 424 (979)
.+|. .|.++++|++|+|++ .+.. .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1333 356677777777777 4442 16
Q ss_pred CcCcc--CCcCCCEEEeCCCCCC-CC-ccccCCcCCcEEEcccCc-Ccc--cchhhccCc-------cccEEecCCCCCc
Q 002024 425 PPSLS--FLVDLRTLRLEDCYLG-DL-SVIGELSNLEILSLCRSS-IKE--IPETFCRLS-------HLWLLDLDHCRQL 490 (979)
Q Consensus 425 p~~~~--~l~~L~~L~L~~~~l~-~l-~~i~~L~~L~~L~Ls~~~-l~~--lp~~i~~L~-------~L~~L~l~~c~~~ 490 (979)
|+.++ .+++|++|+|++|.+. .+ ..++++++|++|+|++|. +.. +|..+++++ +|++|++++|. +
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L 560 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-L 560 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-C
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-C
Confidence 66665 6777777777776533 23 356677777777777775 653 666665555 77777777754 3
Q ss_pred cccCc--chhccCcCCcEEEcccCccccccccccchhccccccccceecccccCCcCCCCC-CCCCCCCeEEEEEccccc
Q 002024 491 ALIPH--GVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH-MPFQHLPNFTIAVRVSWE 567 (979)
Q Consensus 491 ~~~p~--~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~i~~~~~~~ 567 (979)
..+|. . ++++++|+.|++++|... .+..++.+++|+.|+++.+....+|.. ..+++
T Consensus 561 ~~ip~~~~-l~~L~~L~~L~Ls~N~l~-------~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~------------- 619 (876)
T 4ecn_A 561 EEFPASAS-LQKMVKLGLLDCVHNKVR-------HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTD------------- 619 (876)
T ss_dssp CBCCCHHH-HTTCTTCCEEECTTSCCC-------BCCCCCTTSEESEEECCSSCCSCCCTTSCEECT-------------
T ss_pred CccCChhh-hhcCCCCCEEECCCCCcc-------cchhhcCCCcceEEECcCCccccchHHHhhccc-------------
Confidence 36665 4 667777777777666442 112556666777777766665544432 23333
Q ss_pred ccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEE
Q 002024 568 ASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYL 647 (979)
Q Consensus 568 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~ 647 (979)
+|+.|+++++... .+...+.....++|+.|++++|.....+
T Consensus 620 --------------------------------------~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~i 660 (876)
T 4ecn_A 620 --------------------------------------QVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEG 660 (876)
T ss_dssp --------------------------------------TCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTS
T ss_pred --------------------------------------cCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCcc
Confidence 1455555444322 2222222222334666666666321111
Q ss_pred eecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhH------HHhhccCceEe
Q 002024 648 LNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHL------LRRLKNLEYCS 721 (979)
Q Consensus 648 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~------~~~l~~L~~L~ 721 (979)
+ ...........++|+.|+++++.-- .++.. ....+++|+.|++++|. +..++.... +.++++|+.|+
T Consensus 661 p-~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~---~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 661 R-NISCSMDDYKGINASTVTLSYNEIQ-KFPTE---LFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp S-SCSSCTTTCCCCCEEEEECCSSCCC-SCCHH---HHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred c-cchhhhccccCCCcCEEEccCCcCC-ccCHH---HHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEE
Confidence 0 0000000112236677777654322 21110 01245777777777763 344433210 11344888888
Q ss_pred eeccccccceecccCCCCcccccc--ccccccEEecccccccccccccCcccccccCccEEEeccCC-----CcccccCC
Q 002024 722 VFFCASLLHVFDLQGLDNVNQETK--FLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACD-----NLTKLFSH 794 (979)
Q Consensus 722 l~~c~~l~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~-----~l~~l~~~ 794 (979)
+++|. +..++. ... .+++|+.|+|+++. ++.+.. .+..+++|+.|+|++|+ .+....
T Consensus 735 Ls~N~-L~~lp~---------~l~~~~l~~L~~L~Ls~N~-L~~lp~---~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-- 798 (876)
T 4ecn_A 735 LRFNK-LTSLSD---------DFRATTLPYLSNMDVSYNC-FSSFPT---QPLNSSQLKAFGIRHQRDAEGNRILRQW-- 798 (876)
T ss_dssp CCSSC-CCCCCG---------GGSTTTCTTCCEEECCSSC-CSSCCC---GGGGCTTCCEEECCCCBCTTCCBCCCCC--
T ss_pred CCCCC-CccchH---------HhhhccCCCcCEEEeCCCC-CCccch---hhhcCCCCCEEECCCCCCcccccccccC--
Confidence 88763 333332 232 56778888887763 232322 23466777777776633 222221
Q ss_pred ChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEe
Q 002024 795 NSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNL 854 (979)
Q Consensus 795 ~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~ 854 (979)
|..+.++++|+.|++++|.. ..+ |..+. ++|+.|+|++|+ +..+
T Consensus 799 p~~l~~L~~L~~L~Ls~N~L-~~I------------p~~l~--~~L~~LdLs~N~-l~~i 842 (876)
T 4ecn_A 799 PTGITTCPSLIQLQIGSNDI-RKV------------DEKLT--PQLYILDIADNP-NISI 842 (876)
T ss_dssp CTTGGGCSSCCEEECCSSCC-CBC------------CSCCC--SSSCEEECCSCT-TCEE
T ss_pred hHHHhcCCCCCEEECCCCCC-Ccc------------CHhhc--CCCCEEECCCCC-CCcc
Confidence 35566667777777766543 322 33322 466666666653 4333
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=1.2e-24 Score=258.75 Aligned_cols=164 Identities=15% Similarity=0.215 Sum_probs=138.5
Q ss_pred ccCC-cCCCCCceEEEccCCCCcc------------------cChhhhc--CCCCccEEEecC-CcCCCCCcCccCCcCC
Q 002024 377 EVPA-MLECPKLQVLLLQENSPLV------------------IPDKFFQ--GMKDLKVLDLSY-ILPLSLPPSLSFLVDL 434 (979)
Q Consensus 377 ~~~~-~~~~~~L~~L~L~~~~~~~------------------~~~~~~~--~l~~L~~L~L~~-~~~~~~p~~~~~l~~L 434 (979)
.+|+ +.++++|++|+|++|.+.. +|.. +. ++++|++|+|++ .+...+|..++.+++|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 4564 4589999999999999998 6665 66 899999999999 6677899999999999
Q ss_pred CEEEeCCCC-CCC--C-ccccCC------cCCcEEEcccCcCcccch--hhccCccccEEecCCCCCccccCcchhccCc
Q 002024 435 RTLRLEDCY-LGD--L-SVIGEL------SNLEILSLCRSSIKEIPE--TFCRLSHLWLLDLDHCRQLALIPHGVISQLD 502 (979)
Q Consensus 435 ~~L~L~~~~-l~~--l-~~i~~L------~~L~~L~Ls~~~l~~lp~--~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~ 502 (979)
++|+|++|+ ++. + ..++.+ ++|++|++++|.+..+|. .++++++|++|++++|.....+| . +..++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-~~~l~ 353 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-FGSEI 353 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-CEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-hCCCC
Confidence 999999998 875 4 346665 999999999999999998 99999999999999987544888 4 89999
Q ss_pred CCcEEEcccCccccccccccchhccccccc-cceecccccCCcCCCCC
Q 002024 503 KLEEFYMWNTFKNWDCETNAKVVELQALTR-LTNLMFHFPQNSILPSH 549 (979)
Q Consensus 503 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~ 549 (979)
+|+.|++++|... .....+..+++ |+.|+++++....+|..
T Consensus 354 ~L~~L~L~~N~l~------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 354 KLASLNLAYNQIT------EIPANFCGFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp EESEEECCSSEEE------ECCTTSEEECTTCCEEECCSSCCSSCCSC
T ss_pred CCCEEECCCCccc------cccHhhhhhcccCcEEEccCCcCcccchh
Confidence 9999999998653 22356788888 99999998887655543
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=5.8e-24 Score=255.61 Aligned_cols=492 Identities=18% Similarity=0.131 Sum_probs=304.3
Q ss_pred CCCcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCC
Q 002024 359 RDTFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDL 434 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L 434 (979)
...++++++|++++|.++.+++ +.++++|++|+|++|.+..++++.|..+++|++|+|++ .+. .+| ..|+.+++|
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L 150 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTL 150 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCC-CSTTCCCTTCTTC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCC-CCChhhhhcCccc
Confidence 5678899999999999998874 56899999999999999999999999999999999999 555 555 468999999
Q ss_pred CEEEeCCCCCCCC---ccccCCcCCcEEEcccCcCccc-chhhccCcccc----EEecCCCCCccccCcchhccCcCCcE
Q 002024 435 RTLRLEDCYLGDL---SVIGELSNLEILSLCRSSIKEI-PETFCRLSHLW----LLDLDHCRQLALIPHGVISQLDKLEE 506 (979)
Q Consensus 435 ~~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~----~L~l~~c~~~~~~p~~~l~~L~~L~~ 506 (979)
++|+|++|.++.+ ..++.+++|++|++++|.+..+ |..+..+.+++ .++++.+ .+..++.. ......++.
T Consensus 151 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n-~l~~i~~~-~~~~~~~~~ 228 (635)
T 4g8a_A 151 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPG-AFKEIRLHK 228 (635)
T ss_dssp CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC-CCCEECTT-TTTTCEEEE
T ss_pred CeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC-cccccCcc-cccchhhhh
Confidence 9999999998765 4678999999999999999877 45666666554 5677774 35666665 344455677
Q ss_pred EEcccCccccccccccchhccccccccceecccccCCcC---CCC-----CCCCCCCCeEEEEEcccccccccccccccc
Q 002024 507 FYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSI---LPS-----HMPFQHLPNFTIAVRVSWEASDFILSTSSV 578 (979)
Q Consensus 507 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~---~~~-----~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~ 578 (979)
+++.++...... ....+..+..++...+....... +.. ......+....+..................
T Consensus 229 l~l~~n~~~~~~----~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~ 304 (635)
T 4g8a_A 229 LTLRNNFDSLNV----MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC 304 (635)
T ss_dssp EEEESCCSSHHH----HHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG
T ss_pred hhhhcccccccc----cchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhh
Confidence 777665332111 11223344444444332211110 100 012222222322221110000000000000
Q ss_pred cccccccccccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcc
Q 002024 579 NKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHE 658 (979)
Q Consensus 579 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~ 658 (979)
......+....... ..... .....+++.|++.++... .+....++.|+.+.+.++... .. ....
T Consensus 305 ~~~l~~l~~~~~~~-~~~~~--~~~~~~L~~L~l~~~~~~-----~~~~~~l~~L~~l~l~~n~~~-~~-------~~~~ 368 (635)
T 4g8a_A 305 LTNVSSFSLVSVTI-ERVKD--FSYNFGWQHLELVNCKFG-----QFPTLKLKSLKRLTFTSNKGG-NA-------FSEV 368 (635)
T ss_dssp GTTCSEEEEESCEE-EECGG--GGSCCCCSEEEEESCEES-----SCCCCBCTTCCEEEEESCCSC-CB-------CCCC
T ss_pred hccccccccccccc-ccccc--cccchhhhhhhccccccc-----CcCcccchhhhhcccccccCC-CC-------cccc
Confidence 00000000000000 00000 012367888888765422 111234788889988876322 11 1334
Q ss_pred cccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCC
Q 002024 659 TFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLD 738 (979)
Q Consensus 659 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~ 738 (979)
.+++|+.|.++++........ ........+|+.+++..+..... +. .+..+++|+.+++..+........
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~--~~~~~~~~~L~~L~~~~~~~~~~-~~--~~~~l~~L~~l~l~~~~~~~~~~~----- 438 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCC--SQSDFGTISLKYLDLSFNGVITM-SS--NFLGLEQLEHLDFQHSNLKQMSEF----- 438 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEEC--CHHHHSCSCCCEEECCSCSEEEE-CS--CCTTCTTCCEEECTTSEEESTTSS-----
T ss_pred cccccccchhhcccccccccc--ccchhhhhhhhhhhccccccccc-cc--cccccccccchhhhhccccccccc-----
Confidence 577888888876543221110 11123567899999888754332 21 244688999999887654433211
Q ss_pred CccccccccccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHH
Q 002024 739 NVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEI 818 (979)
Q Consensus 739 ~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 818 (979)
..+..+++++.++++.+.. ..+... .+..+++|+.|++++|.....+. +..+..+++|++|++++|. +..+
T Consensus 439 ---~~~~~l~~l~~l~ls~n~l-~~~~~~--~~~~~~~L~~L~Ls~N~~~~~~~--~~~~~~l~~L~~L~Ls~N~-L~~l 509 (635)
T 4g8a_A 439 ---SVFLSLRNLIYLDISHTHT-RVAFNG--IFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQCQ-LEQL 509 (635)
T ss_dssp ---CTTTTCTTCCEEECTTSCC-EECCTT--TTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEEECTTSC-CCEE
T ss_pred ---ccccccccccccccccccc-cccccc--ccccchhhhhhhhhhcccccccC--chhhhhccccCEEECCCCc-cCCc
Confidence 1234567888888887642 222222 23468899999999987666554 3678889999999999974 3322
Q ss_pred HhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeec
Q 002024 819 FGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFP 898 (979)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~ 898 (979)
.|..+..+++|++|+|+++ +++.+++. .+..+++|++|+++++ +++.+++... ...++
T Consensus 510 -----------~~~~f~~l~~L~~L~Ls~N-~l~~l~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~l--------~~l~~ 567 (635)
T 4g8a_A 510 -----------SPTAFNSLSSLQVLNMSHN-NFFSLDTF-PYKCLNSLQVLDYSLN-HIMTSKKQEL--------QHFPS 567 (635)
T ss_dssp -----------CTTTTTTCTTCCEEECTTS-CCCBCCCG-GGTTCTTCCEEECTTS-CCCBCCSSCT--------TCCCT
T ss_pred -----------ChHHHcCCCCCCEEECCCC-cCCCCChh-HHhCCCCCCEEECCCC-cCCCCCHHHH--------HhhhC
Confidence 2567888999999999996 78887554 3678899999999888 5665544321 01236
Q ss_pred cccccccccCccccccc
Q 002024 899 SLFEMELRNLDSLTCFC 915 (979)
Q Consensus 899 ~L~~L~l~~c~~L~~l~ 915 (979)
+|+.|+++++| ++.-|
T Consensus 568 ~L~~L~L~~Np-~~C~C 583 (635)
T 4g8a_A 568 SLAFLNLTQND-FACTC 583 (635)
T ss_dssp TCCEEECTTCC-BCCSG
T ss_pred cCCEEEeeCCC-CcccC
Confidence 89999999866 44433
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=5.9e-24 Score=250.29 Aligned_cols=469 Identities=15% Similarity=0.112 Sum_probs=294.9
Q ss_pred CCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEEEeCCCCCCCC--ccccCCcCCcE
Q 002024 383 ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEI 458 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~ 458 (979)
.+...+++++++|.+..+|...+ ++|++|+|++ .+. .++ ..|..+++|++|+|++|.++.+ ..+.++++|++
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 104 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP---PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY 104 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC---TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC---CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence 45556899999999999997643 8999999999 555 554 6899999999999999999887 46899999999
Q ss_pred EEcccCcCcccchhhccCccccEEecCCCCCccccCc-chhccCcCCcEEEcccCccccccccccchhccccccccceec
Q 002024 459 LSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPH-GVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLM 537 (979)
Q Consensus 459 L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 537 (979)
|++++|.+..+|.. .+++|++|++++|. +..++. ..++++++|++|+++++.... ..+..+.++ +|+.|+
T Consensus 105 L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~-----~~~~~l~~L-~L~~L~ 175 (562)
T 3a79_B 105 LDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ-----LDLLPVAHL-HLSCIL 175 (562)
T ss_dssp EECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT-----TTTGGGTTS-CEEEEE
T ss_pred EECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc-----Cchhhhhhc-eeeEEE
Confidence 99999999999977 89999999999976 555542 338999999999999876531 122333333 448888
Q ss_pred ccccCC--cCCCCCCCCCCCC--eEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecc
Q 002024 538 FHFPQN--SILPSHMPFQHLP--NFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLH 613 (979)
Q Consensus 538 l~~~~~--~~~~~~~~~~~L~--~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~ 613 (979)
++.+.. ..... ..+.+|. .+ ++++.
T Consensus 176 L~~n~l~~~~~~~-~~l~~l~~~~l--------------------------------------------------~l~l~ 204 (562)
T 3a79_B 176 LDLVSYHIKGGET-ESLQIPNTTVL--------------------------------------------------HLVFH 204 (562)
T ss_dssp EEESSCCCCSSSC-CEEEECCEEEE--------------------------------------------------EEEEC
T ss_pred eecccccccccCc-ccccccCcceE--------------------------------------------------EEEec
Confidence 887765 22111 0111111 11 12222
Q ss_pred cccCccccccccccCCcccccEEEEeccCC-ceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCcc
Q 002024 614 EFIGVQDIDGDLISGGFTELKCLTLQSCDN-VKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLK 692 (979)
Q Consensus 614 ~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~ 692 (979)
++.... .........+++|+.|+++++.. ...+... ......+++|+.|.+.++..-.....+ ..+....++|+
T Consensus 205 ~n~~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~---~~~l~~l~~L~~L~L~~~~l~~~~~~~-~~~~~~~~~L~ 279 (562)
T 3a79_B 205 PNSLFS-VQVNMSVNALGHLQLSNIKLNDENCQRLMTF---LSELTRGPTLLNVTLQHIETTWKCSVK-LFQFFWPRPVE 279 (562)
T ss_dssp SSSCCC-CCCEEEESSEEEEEEEEEECCSTTHHHHHHH---HHHHHSCSSCEEEEEEEEEECHHHHHH-HHHHHTTSSEE
T ss_pred Cccchh-hhhhhcccccceEEEecccccccccchHHHH---HHHHhccCcceEEEecCCcCcHHHHHH-HHHhhhccccc
Confidence 222111 12222224578899999987631 1111000 012234456666666543211100000 01111235899
Q ss_pred EEeeeccCCcccccchhHHHhhccCceEeeecccccc-ceecccCCCCccccccccccccEEecccccccccccccCccc
Q 002024 693 RLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLL-HVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKGDSRL 771 (979)
Q Consensus 693 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~ 771 (979)
+|++++|.....++........++|+.|.+.+..... .++... .......++|+.|+++++.... +. ..
T Consensus 280 ~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~-----~~~~~~~~~L~~L~l~~n~~~~-~~----~~ 349 (562)
T 3a79_B 280 YLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA-----LYSVFAEMNIKMLSISDTPFIH-MV----CP 349 (562)
T ss_dssp EEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHH-----HHHHHHTCCCSEEEEESSCCCC-CC----CC
T ss_pred EEEEeccEeeccccchhhhcccccchheehhhcccceeecChhh-----hhhhhccCcceEEEccCCCccc-cc----Cc
Confidence 9999988543344321100001445555544332111 111000 0000012569999998875322 11 11
Q ss_pred ccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchH--HHHhhcccccccCCCCCccccCCccEEEEecCC
Q 002024 772 ISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLE--EIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCS 849 (979)
Q Consensus 772 ~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 849 (979)
..+++|+.|++++|. ++... +..+.++++|+.|+++++..-. .+ |..+..+++|++|++++|.
T Consensus 350 ~~l~~L~~L~l~~n~-l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~------------~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-FTDSV--FQGCSTLKRLQTLILQRNGLKNFFKV------------ALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SSCCCCCEEECCSSC-CCTTT--TTTCCSCSSCCEEECCSSCCCBTTHH------------HHTTTTCTTCCEEECTTSC
T ss_pred cCCCCceEEECCCCc-cccch--hhhhcccCCCCEEECCCCCcCCcccc------------hhhhcCCCCCCEEECCCCc
Confidence 368999999999975 44322 4667899999999999974221 22 3456789999999999974
Q ss_pred CceE-eechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCccccccccCCceeeccccce
Q 002024 850 KLVN-LFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQFLIEFPALEM 928 (979)
Q Consensus 850 ~l~~-~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~ 928 (979)
+.. ++ ...+..+++|++|++++|.--...|.. ..++|+.|++++| .++.+|...+ .+++|++
T Consensus 415 -l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~------------l~~~L~~L~L~~N-~l~~ip~~~~--~l~~L~~ 477 (562)
T 3a79_B 415 -LNSHAY-DRTCAWAESILVLNLSSNMLTGSVFRC------------LPPKVKVLDLHNN-RIMSIPKDVT--HLQALQE 477 (562)
T ss_dssp -CBSCCS-SCCCCCCTTCCEEECCSSCCCGGGGSS------------CCTTCSEEECCSS-CCCCCCTTTT--SSCCCSE
T ss_pred -CCCccC-hhhhcCcccCCEEECCCCCCCcchhhh------------hcCcCCEEECCCC-cCcccChhhc--CCCCCCE
Confidence 555 43 334577899999999998522222221 2279999999997 5999988765 4899999
Q ss_pred eeeccCCCceeecCCCc-cccccceEEcccCCcccCC
Q 002024 929 LTIAECPKIKTFGYGDQ-VTAKLNRVELQEGNRWTGN 964 (979)
Q Consensus 929 L~i~~C~~L~~l~~~~~-~~~~l~~~~~~~~~~w~~~ 964 (979)
|++++| +++++|.... ..+.++.+.+.+ +.|...
T Consensus 478 L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~-N~~~c~ 512 (562)
T 3a79_B 478 LNVASN-QLKSVPDGVFDRLTSLQYIWLHD-NPWDCT 512 (562)
T ss_dssp EECCSS-CCCCCCTTSTTTCTTCCCEECCS-CCBCCC
T ss_pred EECCCC-CCCCCCHHHHhcCCCCCEEEecC-CCcCCC
Confidence 999996 7999998733 457888888754 445553
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1.8e-23 Score=239.89 Aligned_cols=169 Identities=20% Similarity=0.246 Sum_probs=140.9
Q ss_pred CcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeC
Q 002024 361 TFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLE 440 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~ 440 (979)
.+..++.|++.++.+..++.+..+++|++|++++|.+..+++ |..+++|++|+++++....++. +..+++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 356899999999999999988899999999999999998876 8899999999999944336665 8999999999999
Q ss_pred CCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 441 DCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 441 ~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
+|.++.++.+.++++|++|++++|.+..+| .+.++++|++|++.+ .+..++. +.++++|+.|++++|...
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~--~~~~~~~--~~~l~~L~~L~l~~n~l~----- 190 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN--QVTDLKP--LANLTTLERLDISSNKVS----- 190 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE--SCCCCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC--cccCchh--hccCCCCCEEECcCCcCC-----
Confidence 999999988999999999999999988887 489999999999964 3444444 789999999999988642
Q ss_pred ccchhccccccccceecccccCCc
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
.+..+..+++|+.|+++.+...
T Consensus 191 --~~~~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 191 --DISVLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp --CCGGGGGCTTCSEEECCSSCCC
T ss_pred --CChhhccCCCCCEEEecCCccc
Confidence 1244677888888888776543
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=2.1e-23 Score=239.29 Aligned_cols=342 Identities=21% Similarity=0.244 Sum_probs=214.5
Q ss_pred CCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcc
Q 002024 383 ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLC 462 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls 462 (979)
++++++.|+++++.+..++. +..+++|++|+|+++....+|. +..+++|++|++++|.+..++.++++++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECC
Confidence 46789999999999988874 7889999999999944336666 89999999999999999888779999999999999
Q ss_pred cCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecccccC
Q 002024 463 RSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 463 ~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
+|.+..+|. +.++++|++|++++|. +..++. +..+++|+.|+++++.. .+..+.++++|+.|+++++.
T Consensus 121 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~~~--------~~~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 121 NNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQVT--------DLKPLANLTTLERLDISSNK 188 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEESCC--------CCGGGTTCTTCCEEECCSSC
T ss_pred CCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCccc--------CchhhccCCCCCEEECcCCc
Confidence 999998876 8999999999999975 566664 88999999999864321 12347778888888887766
Q ss_pred CcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCccccc
Q 002024 543 NSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDID 622 (979)
Q Consensus 543 ~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 622 (979)
...++.... +++|++|+++++... ...
T Consensus 189 l~~~~~l~~----------------------------------------------------l~~L~~L~l~~n~l~-~~~ 215 (466)
T 1o6v_A 189 VSDISVLAK----------------------------------------------------LTNLESLIATNNQIS-DIT 215 (466)
T ss_dssp CCCCGGGGG----------------------------------------------------CTTCSEEECCSSCCC-CCG
T ss_pred CCCChhhcc----------------------------------------------------CCCCCEEEecCCccc-ccc
Confidence 432221112 234444444333211 111
Q ss_pred cccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCc
Q 002024 623 GDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNI 702 (979)
Q Consensus 623 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l 702 (979)
+ + ..+++|+.|++++|. ++.+ ... ..+++|+.|++++|. +
T Consensus 216 ~-~--~~l~~L~~L~l~~n~-l~~~-------~~l----------------------------~~l~~L~~L~l~~n~-l 255 (466)
T 1o6v_A 216 P-L--GILTNLDELSLNGNQ-LKDI-------GTL----------------------------ASLTNLTDLDLANNQ-I 255 (466)
T ss_dssp G-G--GGCTTCCEEECCSSC-CCCC-------GGG----------------------------GGCTTCSEEECCSSC-C
T ss_pred c-c--cccCCCCEEECCCCC-cccc-------hhh----------------------------hcCCCCCEEECCCCc-c
Confidence 1 1 225555555555541 2111 011 234566666666653 2
Q ss_pred ccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEecccccccccccccCcccccccCccEEEe
Q 002024 703 LNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCL 782 (979)
Q Consensus 703 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l 782 (979)
...++ +..+++|++|++++|. +..++. ...+++|+.|+++++. ++.+. .+..+++|+.|++
T Consensus 256 ~~~~~---~~~l~~L~~L~l~~n~-l~~~~~----------~~~l~~L~~L~L~~n~-l~~~~----~~~~l~~L~~L~L 316 (466)
T 1o6v_A 256 SNLAP---LSGLTKLTELKLGANQ-ISNISP----------LAGLTALTNLELNENQ-LEDIS----PISNLKNLTYLTL 316 (466)
T ss_dssp CCCGG---GTTCTTCSEEECCSSC-CCCCGG----------GTTCTTCSEEECCSSC-CSCCG----GGGGCTTCSEEEC
T ss_pred ccchh---hhcCCCCCEEECCCCc-cCcccc----------ccCCCccCeEEcCCCc-ccCch----hhcCCCCCCEEEC
Confidence 33322 3345666666666543 111110 2335566666666552 22211 1335666777777
Q ss_pred ccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccccCCCCCccccCCccEEEEecCCCceEeechhHHhh
Q 002024 783 WACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAES 862 (979)
Q Consensus 783 ~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 862 (979)
++|. ++...+ +..+++|++|++++|. +.. ...+..+++|+.|++++| .+.++++ +..
T Consensus 317 ~~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~-------------~~~l~~l~~L~~L~l~~n-~l~~~~~---~~~ 373 (466)
T 1o6v_A 317 YFNN-ISDISP----VSSLTKLQRLFFYNNK-VSD-------------VSSLANLTNINWLSAGHN-QISDLTP---LAN 373 (466)
T ss_dssp CSSC-CSCCGG----GGGCTTCCEEECCSSC-CCC-------------CGGGTTCTTCCEEECCSS-CCCBCGG---GTT
T ss_pred cCCc-CCCchh----hccCccCCEeECCCCc-cCC-------------chhhccCCCCCEEeCCCC-ccCccch---hhc
Confidence 7653 443322 5666777777777653 221 123456677777777775 4555433 466
Q ss_pred ccCCCEEEEecc
Q 002024 863 LVLLKTLRVISC 874 (979)
Q Consensus 863 l~~L~~L~l~~c 874 (979)
+++|+.|++++|
T Consensus 374 l~~L~~L~l~~n 385 (466)
T 1o6v_A 374 LTRITQLGLNDQ 385 (466)
T ss_dssp CTTCCEEECCCE
T ss_pred CCCCCEEeccCC
Confidence 677777777666
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.89 E-value=2.4e-22 Score=228.21 Aligned_cols=166 Identities=15% Similarity=0.151 Sum_probs=128.5
Q ss_pred CCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
..++++++|++++|.++.+|.+..+++|+.|++++|.+..++ ++.+++|++|+++++....+| ++.+++|++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 346788889999988888887778888999999998888875 678888999998883332554 788888899999
Q ss_pred CCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccc
Q 002024 440 EDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 440 ~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
++|.++.++ ++.+++|++|++++|.+..++ ++++++|++|++++|..+..++ +..+++|+.|++++|....
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~--- 184 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE--- 184 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC---
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce---
Confidence 888887775 788888888888888888775 7788888888888887666663 6788888888888775421
Q ss_pred cccchhccccccccceecccccCCc
Q 002024 520 TNAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 520 ~~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
+ .+..+++|+.|+++.+...
T Consensus 185 ----l-~l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 185 ----L-DVSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp ----C-CCTTCTTCCEEECCSSCCS
T ss_pred ----e-ccccCCCCCEEECcCCcCC
Confidence 1 1566677777777666543
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3.8e-22 Score=228.81 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=114.8
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCC-CcCccCCcCCCEEEeCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSL-PPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~-p~~~~~l~~L~~L~L~~~~ 443 (979)
+.++.+++.++.+|.. .++|++|++++|.+..+++..|..+++|++|+|++ .+...+ |..|..+++|++|+|++|.
T Consensus 13 ~~~~c~~~~l~~lp~l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 13 YNAICINRGLHQVPEL--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp TEEECCSSCCSSCCCC--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred cccCcCCCCcccCCCC--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 3466666777777762 36788888888888777667778888888888887 333233 4567778888888888887
Q ss_pred CCCC--ccccCCcCCcEEEcccCcCcc-cchh--hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccc
Q 002024 444 LGDL--SVIGELSNLEILSLCRSSIKE-IPET--FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDC 518 (979)
Q Consensus 444 l~~l--~~i~~L~~L~~L~Ls~~~l~~-lp~~--i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 518 (979)
++.+ ..++++++|++|++++|.+.. .|.. +.++++|++|++++|......|...+.++++|++|++++|......
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence 7665 357778888888888887764 3433 7778888888888865433335444677888888888777543211
Q ss_pred ccccchhccccc--cccceecccccCCc
Q 002024 519 ETNAKVVELQAL--TRLTNLMFHFPQNS 544 (979)
Q Consensus 519 ~~~~~~~~l~~l--~~L~~L~l~~~~~~ 544 (979)
...+..+ .+|+.|+++.+...
T Consensus 171 -----~~~l~~l~~~~L~~L~l~~n~l~ 193 (455)
T 3v47_A 171 -----EEDLLNFQGKHFTLLRLSSITLQ 193 (455)
T ss_dssp -----TTTSGGGTTCEEEEEECTTCBCT
T ss_pred -----hhhhhccccccccccccccCccc
Confidence 1233333 46666666665543
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=3.9e-22 Score=219.74 Aligned_cols=170 Identities=18% Similarity=0.207 Sum_probs=109.5
Q ss_pred CCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
..++++++|+++++.+..++.+..+++|+.|++++|.+..+++ |..+++|++|+++++....+| .+..+++|++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYL 117 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEEC
T ss_pred hhcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEEC
Confidence 4556777777777777777766677777777777777776665 667777777777773332433 5677777777777
Q ss_pred CCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccc
Q 002024 440 EDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 440 ~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
++|.+..++.+..+++|++|++++|.....+..+.++++|++|++++|. +..++. +..+++|++|++++|...
T Consensus 118 ~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (347)
T 4fmz_A 118 NEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIE---- 190 (347)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCC----
T ss_pred cCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCccc----
Confidence 7777777666777777777777777433333346777777777777754 444443 566777777777666432
Q ss_pred cccchhccccccccceecccccC
Q 002024 520 TNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 520 ~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
.+..+..+++|+.|+++++.
T Consensus 191 ---~~~~~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 191 ---DISPLASLTSLHYFTAYVNQ 210 (347)
T ss_dssp ---CCGGGGGCTTCCEEECCSSC
T ss_pred ---ccccccCCCccceeecccCC
Confidence 11224555556655555544
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=9.3e-23 Score=231.33 Aligned_cols=147 Identities=21% Similarity=0.159 Sum_probs=76.7
Q ss_pred CCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCC-------------CEEEeCCCCCCCCc
Q 002024 383 ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDL-------------RTLRLEDCYLGDLS 448 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L-------------~~L~L~~~~l~~l~ 448 (979)
+.++|+.|++++|.+..+|+. |+++++|++|++++ .+...+|.+++.+++| ++|++++|.++.++
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred ccccchhhhcccCchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 456667777777777666554 56777777777777 4444667777666654 77777777776665
Q ss_pred cccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccc
Q 002024 449 VIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQ 528 (979)
Q Consensus 449 ~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~ 528 (979)
.+ .++|++|++++|.+..+|.. +++|++|++++|. +..+|. + .++|++|++++|.... +..++
T Consensus 88 ~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~--~--~~~L~~L~L~~n~l~~-------lp~~~ 150 (454)
T 1jl5_A 88 EL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD--L--PPLLEYLGVSNNQLEK-------LPELQ 150 (454)
T ss_dssp SC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS--C--CTTCCEEECCSSCCSS-------CCCCT
T ss_pred CC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccC--C--CCCCCEEECcCCCCCC-------CcccC
Confidence 43 36777777777777777643 3667777777753 444443 1 1567777777664421 12466
Q ss_pred cccccceecccccCCcCCC
Q 002024 529 ALTRLTNLMFHFPQNSILP 547 (979)
Q Consensus 529 ~l~~L~~L~l~~~~~~~~~ 547 (979)
++++|+.|+++++....+|
T Consensus 151 ~l~~L~~L~l~~N~l~~lp 169 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKKLP 169 (454)
T ss_dssp TCTTCCEEECCSSCCSCCC
T ss_pred CCCCCCEEECCCCcCcccC
Confidence 6777777777766654443
No 35
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=3e-21 Score=221.41 Aligned_cols=190 Identities=24% Similarity=0.267 Sum_probs=146.4
Q ss_pred CCccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCc-ccChhhhcCCCCccEEEecC-CcCCCCCc
Q 002024 351 NGLLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPL-VIPDKFFQGMKDLKVLDLSY-ILPLSLPP 426 (979)
Q Consensus 351 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~-~~~~~~p~ 426 (979)
..+..++. ..+++++|++++|.+..++ .+.++++|+.|++++|.+. .+++..|..+++|++|+|++ .+....|.
T Consensus 20 ~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 97 (455)
T 3v47_A 20 RGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETG 97 (455)
T ss_dssp SCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTT
T ss_pred CCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChh
Confidence 34445554 4478999999999999774 4669999999999999987 77788899999999999999 56645688
Q ss_pred CccCCcCCCEEEeCCCCCCCC--cc--ccCCcCCcEEEcccCcCccc-chh-hccCccccEEecCCCCCccccCcchhcc
Q 002024 427 SLSFLVDLRTLRLEDCYLGDL--SV--IGELSNLEILSLCRSSIKEI-PET-FCRLSHLWLLDLDHCRQLALIPHGVISQ 500 (979)
Q Consensus 427 ~~~~l~~L~~L~L~~~~l~~l--~~--i~~L~~L~~L~Ls~~~l~~l-p~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~ 500 (979)
.|..+++|++|+|++|.++.. .. ++++++|++|++++|.+..+ |.. +.++++|++|++++|.. ..++...+..
T Consensus 98 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~ 176 (455)
T 3v47_A 98 AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV-KSICEEDLLN 176 (455)
T ss_dssp TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB-SCCCTTTSGG
T ss_pred hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc-cccChhhhhc
Confidence 999999999999999998763 33 89999999999999999877 554 89999999999999764 4443333666
Q ss_pred C--cCCcEEEcccCccccccccc---cchhccccccccceecccccCC
Q 002024 501 L--DKLEEFYMWNTFKNWDCETN---AKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 501 L--~~L~~L~l~~~~~~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
+ .+|+.|+++++......... .....+..+++|+.|+++++..
T Consensus 177 l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224 (455)
T ss_dssp GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC
T ss_pred cccccccccccccCcccccchhhccccccccccccceeeeEecCCCcc
Confidence 6 78999999887643211110 0112234557788888876653
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.88 E-value=4.7e-22 Score=219.06 Aligned_cols=308 Identities=19% Similarity=0.210 Sum_probs=227.0
Q ss_pred cCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCc
Q 002024 378 VPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLE 457 (979)
Q Consensus 378 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~ 457 (979)
+....++++|+.|++++|.+..++. +..+++|++|+++++....++. +..+++|++|++++|.++.++.+.++++|+
T Consensus 37 ~~~~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~ 113 (347)
T 4fmz_A 37 VVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLR 113 (347)
T ss_dssp EECHHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred cccchhcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCC
Confidence 3344567889999999998888764 7789999999999843336665 888999999999999888888889999999
Q ss_pred EEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceec
Q 002024 458 ILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLM 537 (979)
Q Consensus 458 ~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 537 (979)
+|++++|.+..+|. +.++++|++|++++|.....++. +..+++|++|++++|... .+..+..+++|+.|+
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~-------~~~~~~~l~~L~~L~ 183 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVK-------DVTPIANLTDLYSLS 183 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCC-------CCGGGGGCTTCSEEE
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcC-------CchhhccCCCCCEEE
Confidence 99999998888876 88899999999999876766655 788999999999887542 112377888899999
Q ss_pred ccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccC
Q 002024 538 FHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIG 617 (979)
Q Consensus 538 l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 617 (979)
++++....++....+++|+.|.+..+..... .. ...+++|+.|+++++..
T Consensus 184 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~----------------------------~~--~~~~~~L~~L~l~~n~l 233 (347)
T 4fmz_A 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDI----------------------------TP--VANMTRLNSLKIGNNKI 233 (347)
T ss_dssp CTTSCCCCCGGGGGCTTCCEEECCSSCCCCC----------------------------GG--GGGCTTCCEEECCSSCC
T ss_pred ccCCcccccccccCCCccceeecccCCCCCC----------------------------ch--hhcCCcCCEEEccCCcc
Confidence 9888877666666777888887754322110 00 12357888899877653
Q ss_pred ccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeee
Q 002024 618 VQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVK 697 (979)
Q Consensus 618 ~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 697 (979)
. ...+ + ..+++|++|++++| .++.+ .....+++|++|.++++. ++.+. ....+++|+.|+++
T Consensus 234 ~-~~~~-~--~~l~~L~~L~l~~n-~l~~~-------~~~~~l~~L~~L~l~~n~-l~~~~-----~~~~l~~L~~L~L~ 295 (347)
T 4fmz_A 234 T-DLSP-L--ANLSQLTWLEIGTN-QISDI-------NAVKDLTKLKMLNVGSNQ-ISDIS-----VLNNLSQLNSLFLN 295 (347)
T ss_dssp C-CCGG-G--TTCTTCCEEECCSS-CCCCC-------GGGTTCTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECC
T ss_pred C-CCcc-h--hcCCCCCEEECCCC-ccCCC-------hhHhcCCCcCEEEccCCc-cCCCh-----hhcCCCCCCEEECc
Confidence 3 2222 3 55899999999988 44443 245667899999998763 33321 13468999999999
Q ss_pred ccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEeccccc
Q 002024 698 WCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELIALP 759 (979)
Q Consensus 698 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 759 (979)
+|.. ....+ ..+..+++|++|++++|+ +..++. ...+++|+.|++++++
T Consensus 296 ~n~l-~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~----------~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 296 NNQL-GNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP----------LASLSKMDSADFANQV 344 (347)
T ss_dssp SSCC-CGGGH-HHHHTCTTCSEEECCSSS-CCCCGG----------GGGCTTCSEESSSCC-
T ss_pred CCcC-CCcCh-hHhhccccCCEEEccCCc-cccccC----------hhhhhccceeehhhhc
Confidence 9954 44433 457889999999999986 333322 4568999999999885
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.88 E-value=1.1e-21 Score=222.88 Aligned_cols=161 Identities=19% Similarity=0.139 Sum_probs=129.2
Q ss_pred CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcE
Q 002024 380 AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEI 458 (979)
Q Consensus 380 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~ 458 (979)
.+.++++|+.|++++|.+..+| .|..+++|++|+|++ .+. .+| ++.+++|++|++++|.++.++ ++++++|++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~-~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~ 110 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNIT-TLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTY 110 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCS-CCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCC-eEc--cccCCCCCEEECcCCCCceee-cCCCCcCCE
Confidence 3446899999999999999886 378999999999999 444 565 889999999999999998885 899999999
Q ss_pred EEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecc
Q 002024 459 LSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMF 538 (979)
Q Consensus 459 L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 538 (979)
|++++|.+..+| ++++++|++|++++|. +..++ ++.+++|+.|++++|..... ..+..+++|+.|++
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n~~~~~-------~~~~~l~~L~~L~l 177 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLNKKITK-------LDVTPQTQLTTLDC 177 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTCSCCCC-------CCCTTCTTCCEEEC
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCCCcccc-------cccccCCcCCEEEC
Confidence 999999999886 8999999999999975 55564 78999999999998854311 14677888999999
Q ss_pred cccCCcCCCCCCCCCCCCeEEE
Q 002024 539 HFPQNSILPSHMPFQHLPNFTI 560 (979)
Q Consensus 539 ~~~~~~~~~~~~~~~~L~~L~i 560 (979)
+++....++ ...+++|+.|.+
T Consensus 178 s~n~l~~l~-l~~l~~L~~L~l 198 (457)
T 3bz5_A 178 SFNKITELD-VSQNKLLNRLNC 198 (457)
T ss_dssp CSSCCCCCC-CTTCTTCCEEEC
T ss_pred CCCccceec-cccCCCCCEEEC
Confidence 887765543 333344444443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=4.7e-21 Score=214.57 Aligned_cols=301 Identities=18% Similarity=0.183 Sum_probs=181.5
Q ss_pred CcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEE
Q 002024 361 TFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTL 437 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L 437 (979)
.+.++++++++++.++.+|. +..+++|++|++++|.+..+++..|..+++|++|+|++ .+....|..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 34567777777777777765 34677777777777777777766677777777777777 4443334556777777777
Q ss_pred EeCCCCCCCCcc--ccCCcCCcEEEcccCcCcccc-hhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 438 RLEDCYLGDLSV--IGELSNLEILSLCRSSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 438 ~L~~~~l~~l~~--i~~L~~L~~L~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
+|++|.++.++. ++++++|++|++++|.+..++ ..+.++++|++|++++|. +..++ +..+++|++|+++++..
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCC---GGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCccc---cccccccceeecccccc
Confidence 777777776632 567777777777777776653 356777777777777754 44443 45667777777766533
Q ss_pred ccccccccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccc
Q 002024 515 NWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFS 594 (979)
Q Consensus 515 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 594 (979)
..+...++|+.|+++++....++..
T Consensus 199 ----------~~~~~~~~L~~L~l~~n~l~~~~~~--------------------------------------------- 223 (390)
T 3o6n_A 199 ----------STLAIPIAVEELDASHNSINVVRGP--------------------------------------------- 223 (390)
T ss_dssp ----------SEEECCSSCSEEECCSSCCCEEECC---------------------------------------------
T ss_pred ----------cccCCCCcceEEECCCCeeeecccc---------------------------------------------
Confidence 2333445666666665544322211
Q ss_pred cchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccc
Q 002024 595 PLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSF 674 (979)
Q Consensus 595 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 674 (979)
.+++|+.|+++++.... .+.+ ..+++|++|+++++ .++.+... .+..+++|++|.++++. +
T Consensus 224 --------~~~~L~~L~l~~n~l~~--~~~l--~~l~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~L~~L~L~~n~-l 284 (390)
T 3o6n_A 224 --------VNVELTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYN-ELEKIMYH-----PFVKMQRLERLYISNNR-L 284 (390)
T ss_dssp --------CCSSCCEEECCSSCCCC--CGGG--GGCTTCSEEECCSS-CCCEEESG-----GGTTCSSCCEEECCSSC-C
T ss_pred --------ccccccEEECCCCCCcc--cHHH--cCCCCccEEECCCC-cCCCcChh-----HccccccCCEEECCCCc-C
Confidence 11455666665543221 1233 34778888888877 44443221 33456677777777643 3
Q ss_pred eeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEe
Q 002024 675 VEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIE 754 (979)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~ 754 (979)
+.++ .....+++|+.|++++|. +..+++. +..+++|+.|++++|. +..++ ...+++|+.|+
T Consensus 285 ~~~~----~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~l~~L~~L~L~~N~-i~~~~-----------~~~~~~L~~L~ 345 (390)
T 3o6n_A 285 VALN----LYGQPIPTLKVLDLSHNH-LLHVERN--QPQFDRLENLYLDHNS-IVTLK-----------LSTHHTLKNLT 345 (390)
T ss_dssp CEEE----CSSSCCTTCCEEECCSSC-CCCCGGG--HHHHTTCSEEECCSSC-CCCCC-----------CCTTCCCSEEE
T ss_pred cccC----cccCCCCCCCEEECCCCc-ceecCcc--ccccCcCCEEECCCCc-cceeC-----------chhhccCCEEE
Confidence 3332 123457788888888873 4555432 5567788888887654 22211 23355666666
Q ss_pred cccc
Q 002024 755 LIAL 758 (979)
Q Consensus 755 l~~~ 758 (979)
++++
T Consensus 346 l~~N 349 (390)
T 3o6n_A 346 LSHN 349 (390)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 6554
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=7.5e-21 Score=212.90 Aligned_cols=153 Identities=13% Similarity=0.225 Sum_probs=123.0
Q ss_pred CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCC--ccccCCcCC
Q 002024 380 AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVIGELSNL 456 (979)
Q Consensus 380 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L 456 (979)
....+++++.|++++|.+..+|+.+|..+++|++|+|++ .+....+..|..+++|++|+|++|.++.+ ..++++++|
T Consensus 40 ~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 40 EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 344679999999999999999999999999999999999 55533446899999999999999998888 358899999
Q ss_pred cEEEcccCcCcccchh-hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccce
Q 002024 457 EILSLCRSSIKEIPET-FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTN 535 (979)
Q Consensus 457 ~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~ 535 (979)
++|++++|.+..+|.. +.++++|++|++++|. +..++...+..+++|++|++++|.... ..+..+++|+.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~l~~L~~ 190 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTH--------VDLSLIPSLFH 190 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSB--------CCGGGCTTCSE
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCc--------cccccccccce
Confidence 9999999999999876 5899999999999975 556665558889999999998775421 12344555555
Q ss_pred eccccc
Q 002024 536 LMFHFP 541 (979)
Q Consensus 536 L~l~~~ 541 (979)
|+++++
T Consensus 191 L~l~~n 196 (390)
T 3o6n_A 191 ANVSYN 196 (390)
T ss_dssp EECCSS
T ss_pred eecccc
Confidence 555443
No 40
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=2.2e-21 Score=220.11 Aligned_cols=404 Identities=16% Similarity=0.074 Sum_probs=204.7
Q ss_pred cCCccEEEccCCcccccC-CcCCCCCceEEEccCCCCcccChhhhcCCCCc-------------cEEEecCCcCCCCCcC
Q 002024 362 FEDLTGISLMSNYIHEVP-AMLECPKLQVLLLQENSPLVIPDKFFQGMKDL-------------KVLDLSYILPLSLPPS 427 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~~~~p~~ 427 (979)
...++.+++++|.+..+| .+.++++|+.|++++|.+....+..++.+++| ++|+++++.-..+|..
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 356778888888888887 45578888888888887774333446666654 8888888333256652
Q ss_pred ccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEE
Q 002024 428 LSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEF 507 (979)
Q Consensus 428 ~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L 507 (979)
.++|++|++++|.++.++.. +++|++|++++|.+..+|.. .++|++|++++|. +..+| . ++.+++|++|
T Consensus 90 ---~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~-l~~lp-~-~~~l~~L~~L 158 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQ-LEKLP-E-LQNSSFLKII 158 (454)
T ss_dssp ---CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSC-CSSCC-C-CTTCTTCCEE
T ss_pred ---cCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCC-CCCCc-c-cCCCCCCCEE
Confidence 36788888888887776542 47888888888887776642 1678888888864 55677 3 7888888888
Q ss_pred EcccCccccccccccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEccccccccccccccccccccccccc
Q 002024 508 YMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMIL 587 (979)
Q Consensus 508 ~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 587 (979)
++++|.... .+ ....+|+.|+++++....++....+++|+.|.+..+..... +.
T Consensus 159 ~l~~N~l~~-lp--------~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l-------------~~---- 212 (454)
T 1jl5_A 159 DVDNNSLKK-LP--------DLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL-------------PD---- 212 (454)
T ss_dssp ECCSSCCSC-CC--------CCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-------------CC----
T ss_pred ECCCCcCcc-cC--------CCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcC-------------CC----
Confidence 888775431 11 11247888888888777777666777777777653321100 00
Q ss_pred ccccccccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhc
Q 002024 588 SHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELT 667 (979)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ 667 (979)
..++|+.|+++++... . .+.+ ..+++|++|+++++ .++.++. .+++|++|+
T Consensus 213 ---------------~~~~L~~L~l~~n~l~-~-lp~~--~~l~~L~~L~l~~N-~l~~l~~---------~~~~L~~L~ 263 (454)
T 1jl5_A 213 ---------------LPLSLESIVAGNNILE-E-LPEL--QNLPFLTTIYADNN-LLKTLPD---------LPPSLEALN 263 (454)
T ss_dssp ---------------CCTTCCEEECCSSCCS-S-CCCC--TTCTTCCEEECCSS-CCSSCCS---------CCTTCCEEE
T ss_pred ---------------CcCcccEEECcCCcCC-c-cccc--CCCCCCCEEECCCC-cCCcccc---------cccccCEEE
Confidence 1246778888766432 2 3334 45888888888887 3433321 235788888
Q ss_pred cccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCcccccccc
Q 002024 668 IYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFL 747 (979)
Q Consensus 668 l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~ 747 (979)
++++. ++.+ + ..+++|+.|++++|. +..++.. .++|+.|+++++. +..++. ..
T Consensus 264 l~~N~-l~~l------~-~~~~~L~~L~ls~N~-l~~l~~~-----~~~L~~L~l~~N~-l~~i~~------------~~ 316 (454)
T 1jl5_A 264 VRDNY-LTDL------P-ELPQSLTFLDVSENI-FSGLSEL-----PPNLYYLNASSNE-IRSLCD------------LP 316 (454)
T ss_dssp CCSSC-CSCC------C-CCCTTCCEEECCSSC-CSEESCC-----CTTCCEEECCSSC-CSEECC------------CC
T ss_pred CCCCc-cccc------C-cccCcCCEEECcCCc-cCcccCc-----CCcCCEEECcCCc-CCcccC------------Cc
Confidence 87653 2222 1 134778888888774 4443321 2578888887653 222211 12
Q ss_pred ccccEEecccccccccccccCcccccccCccEEEeccCCCcccccCCChHHhhhcccceEEEecccchHHHHhhcccccc
Q 002024 748 ASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLWACDNLTKLFSHNSLLQSLASLEDVTIISCINLEEIFGKMEMMRK 827 (979)
Q Consensus 748 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~~C~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~ 827 (979)
++|+.|+++++. ++.+.. .+++|+.|++++| .++.+ |. .+++|++|+++++.... ++
T Consensus 317 ~~L~~L~Ls~N~-l~~lp~------~~~~L~~L~L~~N-~l~~l---p~---~l~~L~~L~L~~N~l~~-l~-------- 373 (454)
T 1jl5_A 317 PSLEELNVSNNK-LIELPA------LPPRLERLIASFN-HLAEV---PE---LPQNLKQLHVEYNPLRE-FP-------- 373 (454)
T ss_dssp TTCCEEECCSSC-CSCCCC------CCTTCCEEECCSS-CCSCC---CC---CCTTCCEEECCSSCCSS-CC--------
T ss_pred CcCCEEECCCCc-cccccc------cCCcCCEEECCCC-ccccc---cc---hhhhccEEECCCCCCCc-CC--------
Confidence 478888887763 333322 3577888888775 45544 22 46778888887754221 10
Q ss_pred cCCCCCccccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeecccccccccc
Q 002024 828 NSQPTTSQGLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRN 907 (979)
Q Consensus 828 ~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 907 (979)
..|.. +..| +.+.....++ ..+++|++|++++++ ++.++. .+++|+.|.+.+
T Consensus 374 -~ip~~------l~~L--~~n~~~~~i~-----~~~~~L~~L~ls~N~-l~~~~~-------------iP~sl~~L~~~~ 425 (454)
T 1jl5_A 374 -DIPES------VEDL--RMNSHLAEVP-----ELPQNLKQLHVETNP-LREFPD-------------IPESVEDLRMNS 425 (454)
T ss_dssp -CCCTT------CCEE--ECCC----------------------------------------------------------
T ss_pred -CChHH------HHhh--hhcccccccc-----cccCcCCEEECCCCc-CCcccc-------------chhhHhheeCcC
Confidence 11222 2222 2222222221 234788899998873 433321 356788888877
Q ss_pred Cc
Q 002024 908 LD 909 (979)
Q Consensus 908 c~ 909 (979)
|.
T Consensus 426 ~~ 427 (454)
T 1jl5_A 426 ER 427 (454)
T ss_dssp --
T ss_pred cc
Confidence 65
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=216.14 Aligned_cols=188 Identities=22% Similarity=0.238 Sum_probs=131.4
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYL 444 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l 444 (979)
+.++.+++.++.+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 45667777777777533 36788888888888888777788888888888888 45544477788888888888888887
Q ss_pred CCCc--cccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccc
Q 002024 445 GDLS--VIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETN 521 (979)
Q Consensus 445 ~~l~--~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~ 521 (979)
+.++ .+.++++|++|+|++|.+..+ |..+.++++|++|++++|. +..++...+..+++|++|++++|... .
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~-----~ 166 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLT-----S 166 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCS-----S
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCc-----c
Confidence 7773 467888888888888887765 4577888888888888864 44554444778888888888877542 1
Q ss_pred cchhccccccccceecccccCCcCCCCC--CCCCCCCeEEE
Q 002024 522 AKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTI 560 (979)
Q Consensus 522 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i 560 (979)
.....+..+++|+.|+++.+....++.. ..+++|+.|++
T Consensus 167 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 167 IPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp CCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEE
T ss_pred cChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeC
Confidence 1224466777777777777665433321 33444444444
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=2.8e-20 Score=219.90 Aligned_cols=300 Identities=17% Similarity=0.172 Sum_probs=163.2
Q ss_pred CCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEe
Q 002024 363 EDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L 439 (979)
.+++.++++++.+..+|. +..+++|+.|++++|.+..+++..|..+++|++|+|++ .+....|..|+.+++|++|+|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 455555565555555553 22455566666666655555555555566666666655 333222334455566666666
Q ss_pred CCCCCCCCcc--ccCCcCCcEEEcccCcCcccc-hhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccc
Q 002024 440 EDCYLGDLSV--IGELSNLEILSLCRSSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNW 516 (979)
Q Consensus 440 ~~~~l~~l~~--i~~L~~L~~L~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~ 516 (979)
++|.++.++. ++++++|++|+|++|.+..++ ..++++++|++|++++|. +..++ ++.+++|+.|++++|..
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~l~~L~~L~l~~n~l-- 204 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD---LSLIPSLFHANVSYNLL-- 204 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC---GGGCTTCSEEECCSSCC--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC---hhhhhhhhhhhcccCcc--
Confidence 6655555522 455556666666665555443 245555566666665543 33333 34455555555554432
Q ss_pred ccccccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccc
Q 002024 517 DCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPL 596 (979)
Q Consensus 517 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 596 (979)
..+...++|+.|+++++....++..
T Consensus 205 --------~~l~~~~~L~~L~ls~n~l~~~~~~----------------------------------------------- 229 (597)
T 3oja_B 205 --------STLAIPIAVEELDASHNSINVVRGP----------------------------------------------- 229 (597)
T ss_dssp --------SEEECCTTCSEEECCSSCCCEEECS-----------------------------------------------
T ss_pred --------ccccCCchhheeeccCCcccccccc-----------------------------------------------
Confidence 2223334455555554443222111
Q ss_pred hHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCcccee
Q 002024 597 LGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVE 676 (979)
Q Consensus 597 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 676 (979)
..++|+.|+++++.... .+.+ ..+++|+.|+|++| .+..+... .+..+++|+.|.++++. +..
T Consensus 230 ------~~~~L~~L~L~~n~l~~--~~~l--~~l~~L~~L~Ls~N-~l~~~~~~-----~~~~l~~L~~L~Ls~N~-l~~ 292 (597)
T 3oja_B 230 ------VNVELTILKLQHNNLTD--TAWL--LNYPGLVEVDLSYN-ELEKIMYH-----PFVKMQRLERLYISNNR-LVA 292 (597)
T ss_dssp ------CCSCCCEEECCSSCCCC--CGGG--GGCTTCSEEECCSS-CCCEEESG-----GGTTCSSCCEEECTTSC-CCE
T ss_pred ------cCCCCCEEECCCCCCCC--Chhh--ccCCCCCEEECCCC-ccCCCCHH-----HhcCccCCCEEECCCCC-CCC
Confidence 11456666666554322 2333 34788888888887 44443222 34556788888887643 333
Q ss_pred ecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccccccceecccCCCCccccccccccccEEecc
Q 002024 677 ICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCASLLHVFDLQGLDNVNQETKFLASLKEIELI 756 (979)
Q Consensus 677 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 756 (979)
++ .....+++|+.|++++|. +..+++ .+..+++|+.|++++|.- ..++ ...+++|+.|+++
T Consensus 293 l~----~~~~~l~~L~~L~Ls~N~-l~~i~~--~~~~l~~L~~L~L~~N~l-~~~~-----------~~~~~~L~~L~l~ 353 (597)
T 3oja_B 293 LN----LYGQPIPTLKVLDLSHNH-LLHVER--NQPQFDRLENLYLDHNSI-VTLK-----------LSTHHTLKNLTLS 353 (597)
T ss_dssp EE----CSSSCCTTCCEEECCSSC-CCCCGG--GHHHHTTCSEEECCSSCC-CCCC-----------CCTTCCCSEEECC
T ss_pred CC----cccccCCCCcEEECCCCC-CCccCc--ccccCCCCCEEECCCCCC-CCcC-----------hhhcCCCCEEEee
Confidence 32 223457888888888875 345543 256788888888887652 2211 3346677777776
Q ss_pred ccc
Q 002024 757 ALP 759 (979)
Q Consensus 757 ~~~ 759 (979)
+++
T Consensus 354 ~N~ 356 (597)
T 3oja_B 354 HND 356 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 654
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=4.4e-20 Score=218.27 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=115.2
Q ss_pred CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCc--cccCCcCC
Q 002024 380 AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLS--VIGELSNL 456 (979)
Q Consensus 380 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~--~i~~L~~L 456 (979)
....+++++.|++++|.+..+|+.+|..+++|++|+|++ .+....|..|..+++|++|+|++|.++.++ .++++++|
T Consensus 46 ~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 46 EDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp SSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 344678999999999999999999999999999999999 566344568999999999999999998883 57899999
Q ss_pred cEEEcccCcCcccchh-hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 457 EILSLCRSSIKEIPET-FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 457 ~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
++|+|++|.+..+|.. |+++++|++|++++|. +..+++..++.+++|++|++++|..
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l 183 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRL 183 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCC
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCC
Confidence 9999999999999876 5899999999999975 5566655588999999999988754
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.82 E-value=2.7e-19 Score=206.17 Aligned_cols=299 Identities=19% Similarity=0.202 Sum_probs=211.3
Q ss_pred ccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCc-Cc
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP-SL 428 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~-~~ 428 (979)
+..++. ...++++.|++++|.++.++ .+.++++|+.|+|++|.+..+.+..|..+++|++|+|++ .+. .+|. .|
T Consensus 23 l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 100 (477)
T 2id5_A 23 FVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVF 100 (477)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSS
T ss_pred cCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccc
Confidence 344443 34468999999999999885 466899999999999999999888899999999999999 555 6664 57
Q ss_pred cCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCc
Q 002024 429 SFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLE 505 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~ 505 (979)
..+++|++|+|++|.+..+ ..+.++++|++|++++|.+..+ |..+.++++|++|++++|. +..++...+..+++|+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLI 179 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCc
Confidence 9999999999999998877 4689999999999999999877 4589999999999999974 6778877789999999
Q ss_pred EEEcccCccccccccccchhccccccccceecccccCCc-CCCCC-CCCCCCCeEEEEEccccccccccccccccccccc
Q 002024 506 EFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNS-ILPSH-MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYST 583 (979)
Q Consensus 506 ~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~-~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~ 583 (979)
.|++++|.... .....+..+++|+.|+++.+... .++.. ....+|++|++.
T Consensus 180 ~L~l~~n~i~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~---------------------- 232 (477)
T 2id5_A 180 VLRLRHLNINA-----IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSIT---------------------- 232 (477)
T ss_dssp EEEEESCCCCE-----ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEE----------------------
T ss_pred EEeCCCCcCcE-----eChhhcccCcccceeeCCCCccccccCcccccCccccEEECc----------------------
Confidence 99999886532 22356788999999999875431 12211 222345555543
Q ss_pred ccccccccccccchHHHHHHhcccceeecccccCccccc-cccccCCcccccEEEEeccCCceEEeecccccCCcccccc
Q 002024 584 RMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDID-GDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHN 662 (979)
Q Consensus 584 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~ 662 (979)
++... ... ..+ ..+++|+.|+|+++ .++.++.. .+..+++
T Consensus 233 ------------------------------~n~l~-~~~~~~~--~~l~~L~~L~Ls~n-~l~~~~~~-----~~~~l~~ 273 (477)
T 2id5_A 233 ------------------------------HCNLT-AVPYLAV--RHLVYLRFLNLSYN-PISTIEGS-----MLHELLR 273 (477)
T ss_dssp ------------------------------SSCCC-SCCHHHH--TTCTTCCEEECCSS-CCCEECTT-----SCTTCTT
T ss_pred ------------------------------CCccc-ccCHHHh--cCccccCeeECCCC-cCCccChh-----hcccccc
Confidence 33211 111 111 33666777777666 34443221 2345566
Q ss_pred cchhccccCccceeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccc
Q 002024 663 LEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCA 726 (979)
Q Consensus 663 L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~ 726 (979)
|+.|.++++.- ..+. ......+++|+.|+++++ .++.+++ ..+..+++|+.|++++++
T Consensus 274 L~~L~L~~n~l-~~~~---~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 274 LQEIQLVGGQL-AVVE---PYAFRGLNYLRVLNVSGN-QLTTLEE-SVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSSCC-SEEC---TTTBTTCTTCCEEECCSS-CCSCCCG-GGBSCGGGCCEEECCSSC
T ss_pred CCEEECCCCcc-ceEC---HHHhcCcccCCEEECCCC-cCceeCH-hHcCCCcccCEEEccCCC
Confidence 77777765432 2221 111235678888888877 3455443 335567788888887665
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=3.2e-21 Score=229.27 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=76.9
Q ss_pred CCCCceEEEccCCCCcccChhhhcC-CC-CccEEEecCCcC---CCCCcCccCCcCCCEEEeCCCCCCCC------cccc
Q 002024 383 ECPKLQVLLLQENSPLVIPDKFFQG-MK-DLKVLDLSYILP---LSLPPSLSFLVDLRTLRLEDCYLGDL------SVIG 451 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~~~~~~~~-l~-~L~~L~L~~~~~---~~~p~~~~~l~~L~~L~L~~~~l~~l------~~i~ 451 (979)
.+++|+.|+|++|.+.......+.. ++ +|++|+|+++.. ..++..+..+++|++|+|++|.+++. ....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 5677888888877665433333333 33 377777777321 01222234677777777777765433 1244
Q ss_pred CCcCCcEEEcccCcCc-----ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEccc
Q 002024 452 ELSNLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWN 511 (979)
Q Consensus 452 ~L~~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~ 511 (979)
++++|++|++++|.+. .++..+.++++|++|++++|. +..+|.. +..+++|++|++++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~-~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGF-FKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHH-HHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHH-HhhhhHHHhhcccc
Confidence 6677777777777664 344556677777777777754 3445543 66777777777754
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=1.2e-20 Score=224.29 Aligned_cols=139 Identities=16% Similarity=0.075 Sum_probs=75.3
Q ss_pred ccCccEEEecc---CCCcccccC---CChHHhhhcccceEEEecccc-hHHHHhhcccccccCCCCCccccCCccEEEEe
Q 002024 774 LCSLKKLCLWA---CDNLTKLFS---HNSLLQSLASLEDVTIISCIN-LEEIFGKMEMMRKNSQPTTSQGLQNLTTINIQ 846 (979)
Q Consensus 774 ~~~L~~L~l~~---C~~l~~l~~---~~~~l~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 846 (979)
+++|+.|++.+ |+.++..+. .+..+.++++|+.|+++.|.. +..... ......+++|++|+++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~----------~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL----------SYIGQYSPNVRWMLLG 471 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH----------HHHHHSCTTCCEEEEC
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH----------HHHHHhCccceEeecc
Confidence 66777777763 556654311 023356677888888876653 111100 0011246778888887
Q ss_pred cCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCccccccccCCceeecccc
Q 002024 847 SCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQFLIEFPAL 926 (979)
Q Consensus 847 ~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~L 926 (979)
+|. +++......+..+++|++|++++|+ ++..... .....+++|+.|++++|+ ++..........+|.+
T Consensus 472 ~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--------~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 472 YVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIA--------AAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp SCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHH--------HHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred CCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHH--------HHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 764 4443223345667788888888876 4321000 001146778888888877 6554333333445666
Q ss_pred ceeeecc
Q 002024 927 EMLTIAE 933 (979)
Q Consensus 927 ~~L~i~~ 933 (979)
....+..
T Consensus 541 ~~~~~~~ 547 (592)
T 3ogk_B 541 NIELIPS 547 (592)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 5555544
No 47
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.80 E-value=3e-21 Score=229.73 Aligned_cols=443 Identities=15% Similarity=0.101 Sum_probs=241.6
Q ss_pred EEEccCCCCcccChhhhcCCCCccEEEecCCc--C--CCCCcC------------ccCCcCCCEEEeCCCCCCCC--ccc
Q 002024 389 VLLLQENSPLVIPDKFFQGMKDLKVLDLSYIL--P--LSLPPS------------LSFLVDLRTLRLEDCYLGDL--SVI 450 (979)
Q Consensus 389 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~--~~~p~~------------~~~l~~L~~L~L~~~~l~~l--~~i 450 (979)
.+++..+.. ..+...+..+++|++|+|+++. . ...|.. ...+++|++|+|++|.++.. ..+
T Consensus 47 ~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYA-VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTS-SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeeccccc-cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 455555433 3345667889999999999832 1 011211 24577888888888876543 334
Q ss_pred c-CCcCCcEEEcccC-cCcc--cchhhccCccccEEecCCCCCccccCc----chhccCcCCcEEEcccCcccccccccc
Q 002024 451 G-ELSNLEILSLCRS-SIKE--IPETFCRLSHLWLLDLDHCRQLALIPH----GVISQLDKLEEFYMWNTFKNWDCETNA 522 (979)
Q Consensus 451 ~-~L~~L~~L~Ls~~-~l~~--lp~~i~~L~~L~~L~l~~c~~~~~~p~----~~l~~L~~L~~L~l~~~~~~~~~~~~~ 522 (979)
. .+++|++|++++| .+.. ++..+.++++|++|++++|. +..... .....+++|+.|++++|.. ... ..
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~--~~~-~~ 201 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLAS--EVS-FS 201 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCS--CCC-HH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCC--cCC-HH
Confidence 3 5788888888888 5553 55666678888888888876 332211 1123566888888877641 010 11
Q ss_pred chhc-cccccccceecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHH
Q 002024 523 KVVE-LQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVK 601 (979)
Q Consensus 523 ~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 601 (979)
.+.. ...+++|+.|+++.+.. ........
T Consensus 202 ~l~~l~~~~~~L~~L~L~~~~~--------------------------------------------------~~~l~~~~ 231 (594)
T 2p1m_B 202 ALERLVTRCPNLKSLKLNRAVP--------------------------------------------------LEKLATLL 231 (594)
T ss_dssp HHHHHHHHCTTCCEEECCTTSC--------------------------------------------------HHHHHHHH
T ss_pred HHHHHHHhCCCCcEEecCCCCc--------------------------------------------------HHHHHHHH
Confidence 1122 23456666666654311 00022223
Q ss_pred HHhcccceeecccccC------ccccccccccCCcccccEEE-EeccCCceEEeecccccCCcccccccchhccccCccc
Q 002024 602 DLLKRSEFLFLHEFIG------VQDIDGDLISGGFTELKCLT-LQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSF 674 (979)
Q Consensus 602 ~~~~~L~~L~L~~~~~------~~~~~~~~~~~~l~~L~~L~-L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 674 (979)
..+++|++|.+..+.. +......+ .++++|+.|. +.+... ..+ ......+++|++|+++++. +
T Consensus 232 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l--~~~~~L~~Ls~~~~~~~-~~l------~~~~~~~~~L~~L~L~~~~-l 301 (594)
T 2p1m_B 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVAL--SGCKELRCLSGFWDAVP-AYL------PAVYSVCSRLTTLNLSYAT-V 301 (594)
T ss_dssp HHCTTCSEEECSBCCCCCCHHHHHHHHHHH--HTCTTCCEEECCBTCCG-GGG------GGGHHHHTTCCEEECTTCC-C
T ss_pred hcCCcceEcccccccCccchhhHHHHHHHH--hcCCCcccccCCcccch-hhH------HHHHHhhCCCCEEEccCCC-C
Confidence 3457888888754432 11111122 3466666662 222110 000 0112256789999998776 4
Q ss_pred eeecccCccCCCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeeccc--------cccceecccCCCCccccccc
Q 002024 675 VEICHGQVLPAGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFCA--------SLLHVFDLQGLDNVNQETKF 746 (979)
Q Consensus 675 ~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~--------~l~~~~~~~~~~~~~~~~~~ 746 (979)
..... ......+++|++|++.+| +...........+++|++|++++|. .+.... ...-...
T Consensus 302 ~~~~l--~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~-------l~~l~~~ 370 (594)
T 2p1m_B 302 QSYDL--VKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQG-------LVSVSMG 370 (594)
T ss_dssp CHHHH--HHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHH-------HHHHHHH
T ss_pred CHHHH--HHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHH-------HHHHHHh
Confidence 32111 001236789999999988 2322222234468899999986542 221100 0000123
Q ss_pred cccccEEecccccccccccccCcccccccCccEEEec-----cCCCcccccCC---ChHHhhhcccceEEEecccchHHH
Q 002024 747 LASLKEIELIALPEMTHIWKGDSRLISLCSLKKLCLW-----ACDNLTKLFSH---NSLLQSLASLEDVTIISCINLEEI 818 (979)
Q Consensus 747 ~~~L~~L~l~~~~~l~~i~~~~~~~~~~~~L~~L~l~-----~C~~l~~l~~~---~~~l~~l~~L~~L~l~~c~~l~~~ 818 (979)
+++|+.|.+ +|..++..... .....+++|+.|++. +|+.++..+.. +..+..+++|+.|++++ .+.+.
T Consensus 371 ~~~L~~L~~-~~~~l~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~ 446 (594)
T 2p1m_B 371 CPKLESVLY-FCRQMTNAALI-TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDK 446 (594)
T ss_dssp CTTCCEEEE-EESCCCHHHHH-HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHH
T ss_pred chhHHHHHH-hcCCcCHHHHH-HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHH
Confidence 688888854 33333321100 001247889999998 67777743210 22367778899999976 22221
Q ss_pred HhhcccccccCCCCCcc-ccCCccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceee
Q 002024 819 FGKMEMMRKNSQPTTSQ-GLQNLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEF 897 (979)
Q Consensus 819 ~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~ 897 (979)
. +..+. .+++|+.|++++|. +++.....+...+++|++|++++|+. +...... ....+
T Consensus 447 ~-----------~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~--------~~~~l 505 (594)
T 2p1m_B 447 V-----------FEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLA--------NASKL 505 (594)
T ss_dssp H-----------HHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHH--------TGGGG
T ss_pred H-----------HHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHH--------HHHhC
Confidence 0 01122 37789999998875 54433334446788999999998864 2211100 01147
Q ss_pred ccccccccccCccccccccCCceeeccccceeeecc
Q 002024 898 PSLFEMELRNLDSLTCFCSGQFLIEFPALEMLTIAE 933 (979)
Q Consensus 898 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~L~~L~i~~ 933 (979)
++|+.|++++|+. +.-........+|.|+...+.+
T Consensus 506 ~~L~~L~l~~~~~-~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 506 ETMRSLWMSSCSV-SFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp GGSSEEEEESSCC-BHHHHHHHHHHCTTEEEEEECS
T ss_pred CCCCEEeeeCCCC-CHHHHHHHHHhCCCCEEEEecC
Confidence 8899999999874 3211111223356665544443
No 48
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=3.4e-20 Score=220.58 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=89.4
Q ss_pred CCCCceEEEccCCCCcccChhhhc-CCCCccEEEecCC--cCC-CCCcCccCCcCCCEEEeCCCCCCCC-----c-cccC
Q 002024 383 ECPKLQVLLLQENSPLVIPDKFFQ-GMKDLKVLDLSYI--LPL-SLPPSLSFLVDLRTLRLEDCYLGDL-----S-VIGE 452 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~--~~~-~~p~~~~~l~~L~~L~L~~~~l~~l-----~-~i~~ 452 (979)
.+++|+.|++++|.+.......+. .+++|++|+|+++ +.. .++..+..+++|++|+|++|.+++. . ....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 578889999988887654333343 5788999998874 221 1344445788899999988875543 2 2236
Q ss_pred CcCCcEEEcccCc--Cc--ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCc
Q 002024 453 LSNLEILSLCRSS--IK--EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 453 L~~L~~L~Ls~~~--l~--~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
+++|++|++++|. +. .++..+.++++|++|++++|..+..++.. +..+++|++|+++++.
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYT 246 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCC
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEccccccc
Confidence 7788888888875 22 33444566788888988888666666554 7788888888877653
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.78 E-value=3.2e-18 Score=186.76 Aligned_cols=288 Identities=15% Similarity=0.080 Sum_probs=170.6
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDC 442 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~ 442 (979)
.++.++++++.++.+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|++++|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 5678888888888877543 36888888888888888777788888888888888 555344677888888888888888
Q ss_pred CCCCCccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCcc-ccCcchhccCcCCcEEEcccCcccccccc
Q 002024 443 YLGDLSVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLA-LIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 443 ~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~-~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
.++.++.-.. ++|++|++++|.+..+|. .+.++++|++|++++|.... ..+...+..+ +|+.|++++|....-.
T Consensus 113 ~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~-- 188 (332)
T 2ft3_A 113 HLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP-- 188 (332)
T ss_dssp CCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC--
T ss_pred cCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC--
Confidence 8777743211 788888888888887764 47788888888888865321 1222225556 7777777776542110
Q ss_pred ccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchH
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLG 598 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 598 (979)
..+ .++|+.|+++++.....+.. ..+
T Consensus 189 ----~~~--~~~L~~L~l~~n~i~~~~~~~l~~l---------------------------------------------- 216 (332)
T 2ft3_A 189 ----KDL--PETLNELHLDHNKIQAIELEDLLRY---------------------------------------------- 216 (332)
T ss_dssp ----SSS--CSSCSCCBCCSSCCCCCCTTSSTTC----------------------------------------------
T ss_pred ----ccc--cCCCCEEECCCCcCCccCHHHhcCC----------------------------------------------
Confidence 111 25677777776655433311 222
Q ss_pred HHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeec
Q 002024 599 WVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEIC 678 (979)
Q Consensus 599 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 678 (979)
++|+.|+++++.........+ ..+++|++|++++| .++.++. ....+++|++|+++++. ++...
T Consensus 217 ------~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N-~l~~lp~------~l~~l~~L~~L~l~~N~-l~~~~ 280 (332)
T 2ft3_A 217 ------SKLYRLGLGHNQIRMIENGSL--SFLPTLRELHLDNN-KLSRVPA------GLPDLKLLQVVYLHTNN-ITKVG 280 (332)
T ss_dssp ------TTCSCCBCCSSCCCCCCTTGG--GGCTTCCEEECCSS-CCCBCCT------TGGGCTTCCEEECCSSC-CCBCC
T ss_pred ------CCCCEEECCCCcCCcCChhHh--hCCCCCCEEECCCC-cCeecCh------hhhcCccCCEEECCCCC-CCccC
Confidence 344455554432221111122 33667777777766 3443321 23445666666666532 33221
Q ss_pred ccCccC----CCCCCCccEEeeeccCCcccccchhHHHhhccCceEeeecc
Q 002024 679 HGQVLP----AGSFNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSVFFC 725 (979)
Q Consensus 679 ~~~~~~----~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 725 (979)
.. .+. ...+++|+.|++.+++....-.+...+..+++|+.++++++
T Consensus 281 ~~-~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 281 VN-DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp TT-SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred hh-HccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 11 111 11256677777777664321122233555666666666654
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.6e-17 Score=181.17 Aligned_cols=150 Identities=23% Similarity=0.242 Sum_probs=112.4
Q ss_pred CCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCC
Q 002024 363 EDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLED 441 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~ 441 (979)
..++.++++++.++.+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 35778888888888887533 36888899999988888887788888999999988 55544477888888899999988
Q ss_pred CCCCCCccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCcc-ccCcchhccCcCCcEEEcccCcc
Q 002024 442 CYLGDLSVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLA-LIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 442 ~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~-~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
|.++.++.-. .++|++|++++|.+..++. .+.++++|++|++++|.... ......+..+++|++|++++|..
T Consensus 110 n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 110 NQLKELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp SCCSBCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CcCCccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 8887764211 2788888888888887754 57888888888888865321 12223367788888888877654
No 51
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=3.4e-18 Score=184.33 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=109.0
Q ss_pred CCccEEEccCCccc---ccC-CcCCCCCceEEEccC-CCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCE
Q 002024 363 EDLTGISLMSNYIH---EVP-AMLECPKLQVLLLQE-NSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRT 436 (979)
Q Consensus 363 ~~l~~l~l~~~~~~---~~~-~~~~~~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~ 436 (979)
..++.|++++|.+. .+| .+.++++|++|++++ |.+....+..|..+++|++|+|++ .+...+|..|..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 45667777777766 344 344677777777774 666644444466777777777777 444466666777777777
Q ss_pred EEeCCCCCCC-C-ccccCCcCCcEEEcccCcCc-ccchhhccCc-cccEEecCCCCCccccCcchhccCcCCcEEEcccC
Q 002024 437 LRLEDCYLGD-L-SVIGELSNLEILSLCRSSIK-EIPETFCRLS-HLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNT 512 (979)
Q Consensus 437 L~L~~~~l~~-l-~~i~~L~~L~~L~Ls~~~l~-~lp~~i~~L~-~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~ 512 (979)
|+|++|.++. + ..+..+++|++|++++|.+. .+|..+.+++ +|++|++++|.....+|.. +..++ |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence 7777776652 3 45667777777777777766 6676777776 7777777776543345544 56665 777777766
Q ss_pred ccccccccccchhccccccccceecccccCC
Q 002024 513 FKNWDCETNAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 513 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
.... .....+..+++|+.|+++++..
T Consensus 208 ~l~~-----~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 208 MLEG-----DASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EEEE-----CCGGGCCTTSCCSEEECCSSEE
T ss_pred cccC-----cCCHHHhcCCCCCEEECCCCce
Confidence 4421 1224455666666666665543
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=185.16 Aligned_cols=279 Identities=20% Similarity=0.155 Sum_probs=183.9
Q ss_pred ccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 365 LTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 365 l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
....+.+++.++.+|... .++|+.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|.
T Consensus 33 ~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp TSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CeEeeCCCCCcccccccc-cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 345777888888888533 25889999999998888887788899999999988 5553445678888999999999998
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCcccch--hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccc
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEIPE--TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~--~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
++.++ .++++++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+..+++|++|++++|....
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--- 188 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS--- 188 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE---
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc---
Confidence 88874 37888999999999998888876 688889999999988766777765557888888988888875431
Q ss_pred cccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHH
Q 002024 520 TNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGW 599 (979)
Q Consensus 520 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 599 (979)
.....+..+++|+.|+++++....+ +..
T Consensus 189 --~~~~~l~~l~~L~~L~l~~n~l~~~--------------------------------------------------~~~ 216 (353)
T 2z80_A 189 --YEPKSLKSIQNVSHLILHMKQHILL--------------------------------------------------LEI 216 (353)
T ss_dssp --ECTTTTTTCSEEEEEEEECSCSTTH--------------------------------------------------HHH
T ss_pred --cCHHHHhccccCCeecCCCCccccc--------------------------------------------------hhh
Confidence 2235566777777777776654221 222
Q ss_pred HHHHhcccceeecccccCccccccccc-cCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeec
Q 002024 600 VKDLLKRSEFLFLHEFIGVQDIDGDLI-SGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEIC 678 (979)
Q Consensus 600 ~~~~~~~L~~L~L~~~~~~~~~~~~~~-~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 678 (979)
....+++|+.|+++++.........+. ....+.++.+++.++. +...... ........+++|+.|+++++. ++.++
T Consensus 217 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~-~l~~~l~~l~~L~~L~Ls~N~-l~~i~ 293 (353)
T 2z80_A 217 FVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLF-QVMKLLNQISGLLELEFSRNQ-LKSVP 293 (353)
T ss_dssp HHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCB-CCHHHHH-HHHHHHHTCTTCCEEECCSSC-CCCCC
T ss_pred hhhhcccccEEECCCCccccccccccccccccchhhcccccccc-ccCcchh-hhHHHHhcccCCCEEECCCCC-CCccC
Confidence 233346666666655432221111110 0124556667776652 2110000 000123456788888887653 33332
Q ss_pred ccCccCCCCCCCccEEeeeccCCcccc
Q 002024 679 HGQVLPAGSFNKLKRLDVKWCQNILNI 705 (979)
Q Consensus 679 ~~~~~~~~~~~~L~~L~l~~c~~l~~~ 705 (979)
.+ ....+++|++|++++++-....
T Consensus 294 ~~---~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 294 DG---IFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp TT---TTTTCTTCCEEECCSSCBCCCH
T ss_pred HH---HHhcCCCCCEEEeeCCCccCcC
Confidence 11 0146789999999998765544
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=1.7e-17 Score=189.28 Aligned_cols=171 Identities=25% Similarity=0.279 Sum_probs=138.9
Q ss_pred ccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 365 LTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 365 l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
...++..+..++.+|... .++++.|+|++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|.
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 456778888888888543 37899999999999999888899999999999999 5554455788999999999999999
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
++.++ .+..+++|++|+|++|.+..+|. .+.++++|++|++++|..+..++...+..+++|+.|++++|...
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----- 209 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK----- 209 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-----
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-----
Confidence 88873 48889999999999999998875 78899999999999988888888877889999999999887542
Q ss_pred ccchhccccccccceecccccCC
Q 002024 521 NAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
.+..+..+++|+.|+++++..
T Consensus 210 --~~~~~~~l~~L~~L~Ls~N~l 230 (452)
T 3zyi_A 210 --DMPNLTPLVGLEELEMSGNHF 230 (452)
T ss_dssp --SCCCCTTCTTCCEEECTTSCC
T ss_pred --ccccccccccccEEECcCCcC
Confidence 123456666777777766554
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.74 E-value=1.1e-17 Score=181.29 Aligned_cols=171 Identities=24% Similarity=0.325 Sum_probs=135.1
Q ss_pred CCccEEEccCCcccccCC-cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeC
Q 002024 363 EDLTGISLMSNYIHEVPA-MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLE 440 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~ 440 (979)
..++.|++++|.+..+|. +.++++|+.|++++|.+..+|.. |..+++|++|+|++ .+. .+|..+..+++|++|+|+
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 568889999999998885 55789999999999999877754 68899999999999 455 889889999999999999
Q ss_pred CCC-CCCCc-c---------ccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEc
Q 002024 441 DCY-LGDLS-V---------IGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYM 509 (979)
Q Consensus 441 ~~~-l~~l~-~---------i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l 509 (979)
+|+ +..++ . ++++++|++|++++|.+..+|..++++++|++|++++|. +..+|.. +..+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEEC
Confidence 875 34442 2 345899999999999998999889999999999999865 5667776 888999999999
Q ss_pred ccCccccccccccchhccccccccceecccccC
Q 002024 510 WNTFKNWDCETNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 510 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
++|..... ....+..+++|+.|+++++.
T Consensus 237 s~n~~~~~-----~p~~~~~l~~L~~L~L~~n~ 264 (328)
T 4fcg_A 237 RGCTALRN-----YPPIFGGRAPLKRLILKDCS 264 (328)
T ss_dssp TTCTTCCB-----CCCCTTCCCCCCEEECTTCT
T ss_pred cCCcchhh-----hHHHhcCCCCCCEEECCCCC
Confidence 88765422 22445666677777666543
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=188.20 Aligned_cols=172 Identities=26% Similarity=0.322 Sum_probs=138.6
Q ss_pred ccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 365 LTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 365 l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
...++..+..++.+|.... ++++.|+|++|.+..+++..|..+++|++|+|++ .+....+..|..+++|++|+|++|.
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 4567888888888885443 7899999999999998888899999999999999 5553444778899999999999999
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
++.++ .+..+++|++|+|++|.+..+|. .+.++++|++|++++|..+..++...+..+++|++|++++|...
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----- 198 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----- 198 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-----
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-----
Confidence 88883 58899999999999999988865 78899999999999988888888777888999999999887542
Q ss_pred ccchhccccccccceecccccCCc
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
.+..+..+++|+.|+++++...
T Consensus 199 --~~~~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 199 --EIPNLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp --SCCCCTTCSSCCEEECTTSCCC
T ss_pred --cccccCCCcccCEEECCCCccC
Confidence 1234566677777777666543
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.74 E-value=3.8e-19 Score=204.22 Aligned_cols=157 Identities=18% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCceEEEccCCCCcccC-hhhhcCCCCccEEEecC-CcCC----CCCcCccCCcCCCEEEeCCCCCCCC--cc-ccCCc-
Q 002024 385 PKLQVLLLQENSPLVIP-DKFFQGMKDLKVLDLSY-ILPL----SLPPSLSFLVDLRTLRLEDCYLGDL--SV-IGELS- 454 (979)
Q Consensus 385 ~~L~~L~L~~~~~~~~~-~~~~~~l~~L~~L~L~~-~~~~----~~p~~~~~l~~L~~L~L~~~~l~~l--~~-i~~L~- 454 (979)
++|+.|++++|.+.... ...|..+++|++|+|++ .+.. .++..+..+++|++|+|++|.+++. .. ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35566666666655432 22355666666666666 2221 2345556667777777777765442 11 22233
Q ss_pred ---CCcEEEcccCcCc-----ccchhhccCccccEEecCCCCCccccCc----chhccCcCCcEEEcccCcccccccccc
Q 002024 455 ---NLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHCRQLALIPH----GVISQLDKLEEFYMWNTFKNWDCETNA 522 (979)
Q Consensus 455 ---~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c~~~~~~p~----~~l~~L~~L~~L~l~~~~~~~~~~~~~ 522 (979)
+|++|++++|.+. .+|..+.++++|++|++++|......+. ......++|++|++++|....... ..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-~~ 161 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC-EP 161 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH-HH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH-HH
Confidence 5777777777665 3466677777777777777652211111 111224567777777664321100 11
Q ss_pred chhccccccccceecccccC
Q 002024 523 KVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 523 ~~~~l~~l~~L~~L~l~~~~ 542 (979)
....+..+++|+.|+++++.
T Consensus 162 l~~~l~~~~~L~~L~L~~n~ 181 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNND 181 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHhhCCCCCEEECcCCC
Confidence 12334455666666665543
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=2.3e-16 Score=171.98 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=143.9
Q ss_pred cCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 362 FEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
.+.++.|++++|.++.++. +.++++|++|++++|.+..+.+..|..+++|++|+|+++....+|..+. ++|++|++
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 4689999999999998874 6689999999999999999988889999999999999943337887765 79999999
Q ss_pred CCCCCCCCc--cccCCcCCcEEEcccCcCc---ccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 440 EDCYLGDLS--VIGELSNLEILSLCRSSIK---EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 440 ~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~---~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
++|.++.++ .+.++++|++|++++|.+. ..+..+.++++|++|++++|. +..+|.. + .++|++|++++|..
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~-~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG-L--PPSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSS-C--CTTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCcc-c--cccCCEEECCCCcC
Confidence 999998883 5899999999999999886 346789999999999999965 6778875 2 28999999998865
Q ss_pred ccccccccchhccccccccceecccccCCc
Q 002024 515 NWDCETNAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 515 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
. ......+..+++|+.|+++++...
T Consensus 205 ~-----~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 205 T-----KVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp C-----EECTGGGTTCTTCCEEECCSSCCC
T ss_pred C-----ccCHHHhcCCCCCCEEECCCCcCc
Confidence 3 222356778888999988877654
No 58
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=1.5e-16 Score=173.56 Aligned_cols=269 Identities=17% Similarity=0.178 Sum_probs=191.7
Q ss_pred cCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 362 FEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
.++++.|++++|.+..++ .+.++++|+.|++++|.+..+++..|..+++|++|+|+++....+|..+. ++|++|++
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l 130 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI 130 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence 468999999999999886 46699999999999999999988889999999999999944338887765 89999999
Q ss_pred CCCCCCCCc--cccCCcCCcEEEcccCcCcc---cchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 440 EDCYLGDLS--VIGELSNLEILSLCRSSIKE---IPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 440 ~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~---lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
++|.++.++ .+.++++|++|++++|.+.. .|..+..+ +|++|++++|. +..+|.. +. ++|++|++++|..
T Consensus 131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~-~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKD-LP--ETLNELHLDHNKI 205 (332)
T ss_dssp CSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSS-SC--SSCSCCBCCSSCC
T ss_pred CCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCcc-cc--CCCCEEECCCCcC
Confidence 999998884 48999999999999998863 46677777 99999999965 6778875 32 7899999998865
Q ss_pred ccccccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEEcccccccccccccccccccccccccccccc
Q 002024 515 NWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMR 592 (979)
Q Consensus 515 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 592 (979)
. ......+..+++|+.|+++++.....+.. ..+
T Consensus 206 ~-----~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l---------------------------------------- 240 (332)
T 2ft3_A 206 Q-----AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL---------------------------------------- 240 (332)
T ss_dssp C-----CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC----------------------------------------
T ss_pred C-----ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC----------------------------------------
Confidence 3 22235678899999999998876544331 223
Q ss_pred cccchHHHHHHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeeccccc-CCcccccccchhccccC
Q 002024 593 FSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERA-APHETFHNLEELTIYSN 671 (979)
Q Consensus 593 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 671 (979)
++|+.|+++++.. ..+...+ ..+++|+.|+++++ .++.++...... .....+++|+.|.+.++
T Consensus 241 ------------~~L~~L~L~~N~l-~~lp~~l--~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N 304 (332)
T 2ft3_A 241 ------------PTLRELHLDNNKL-SRVPAGL--PDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN 304 (332)
T ss_dssp ------------TTCCEEECCSSCC-CBCCTTG--GGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred ------------CCCCEEECCCCcC-eecChhh--hcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence 4555666654432 2333333 34788888888887 455543322111 11122567888888776
Q ss_pred ccceeecccCccCCCCCCCccEEeeeccC
Q 002024 672 HSFVEICHGQVLPAGSFNKLKRLDVKWCQ 700 (979)
Q Consensus 672 ~~l~~~~~~~~~~~~~~~~L~~L~l~~c~ 700 (979)
+.. .+... ......+++|+.++++++.
T Consensus 305 ~~~-~~~~~-~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 305 PVP-YWEVQ-PATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSC-GGGSC-GGGGTTBCCSTTEEC----
T ss_pred ccc-ccccC-cccccccchhhhhhccccc
Confidence 532 11000 1112467888888888764
No 59
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.72 E-value=2.2e-17 Score=177.93 Aligned_cols=153 Identities=14% Similarity=0.143 Sum_probs=126.7
Q ss_pred CCceEEEccCCCCcc--cChhhhcCCCCccEEEecC--CcCCCCCcCccCCcCCCEEEeCCCCCC-CC-ccccCCcCCcE
Q 002024 385 PKLQVLLLQENSPLV--IPDKFFQGMKDLKVLDLSY--ILPLSLPPSLSFLVDLRTLRLEDCYLG-DL-SVIGELSNLEI 458 (979)
Q Consensus 385 ~~L~~L~L~~~~~~~--~~~~~~~~l~~L~~L~L~~--~~~~~~p~~~~~l~~L~~L~L~~~~l~-~l-~~i~~L~~L~~ 458 (979)
.+++.|++++|.+.. ..+..|..+++|++|+|++ .+...+|..|..+++|++|+|++|.++ .+ ..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 689999999999985 3445689999999999994 566688999999999999999999987 44 56999999999
Q ss_pred EEcccCcCc-ccchhhccCccccEEecCCCCCccccCcchhccCc-CCcEEEcccCccccccccccchhcccccccccee
Q 002024 459 LSLCRSSIK-EIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLD-KLEEFYMWNTFKNWDCETNAKVVELQALTRLTNL 536 (979)
Q Consensus 459 L~Ls~~~l~-~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L 536 (979)
|++++|.+. .+|..+.++++|++|++++|.....+|.. +..++ +|++|++++|.... .....+..++ |+.|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~-----~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG-----KIPPTFANLN-LAFV 202 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE-----ECCGGGGGCC-CSEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec-----cCChHHhCCc-ccEE
Confidence 999999998 78999999999999999998755577877 78888 99999999886542 2224555665 8888
Q ss_pred cccccCCc
Q 002024 537 MFHFPQNS 544 (979)
Q Consensus 537 ~l~~~~~~ 544 (979)
+++++...
T Consensus 203 ~Ls~N~l~ 210 (313)
T 1ogq_A 203 DLSRNMLE 210 (313)
T ss_dssp ECCSSEEE
T ss_pred ECcCCccc
Confidence 88776543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.3e-16 Score=169.84 Aligned_cols=195 Identities=28% Similarity=0.379 Sum_probs=149.6
Q ss_pred CcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCC--cCCCCCcCccCCcCCCE
Q 002024 361 TFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYI--LPLSLPPSLSFLVDLRT 436 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~~~~p~~~~~l~~L~~ 436 (979)
..+++++|++++|.++.++. +..+++|+.|++++|.+..+.+..|..+++|++|+|+++ +....|..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 45688899999998887773 568889999999999888887777888899999999884 44333677888899999
Q ss_pred EEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCc
Q 002024 437 LRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 437 L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
|++++|.++.+ ..+.++++|++|++++|.+..+|. .+.++++|++|++++|. +..++...+..+++|++|++++|.
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-ccccCHHHhcCccccCEEECCCCc
Confidence 99999888777 347888899999999988887765 47888899999998864 667776657888899999988876
Q ss_pred cccccccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEE
Q 002024 514 KNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIA 561 (979)
Q Consensus 514 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~ 561 (979)
.. ......+..+++|+.|+++++.....+.. ..+++|+.|++.
T Consensus 189 l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 189 VA-----HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp CC-----EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cc-----ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 53 12235667788888888888776655432 455566666554
No 61
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.71 E-value=7.7e-17 Score=174.73 Aligned_cols=196 Identities=23% Similarity=0.279 Sum_probs=168.0
Q ss_pred CCCcCCccEEEccCCcccccCC-cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccC------
Q 002024 359 RDTFEDLTGISLMSNYIHEVPA-MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSF------ 430 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~------ 430 (979)
...++++++|++++|.+..+|. +.++++|+.|++++|.+..+|.. |..+++|++|+|++ +....+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 3457899999999999999885 56899999999999999988765 78999999999999 666688887765
Q ss_pred ---CcCCCEEEeCCCCCCCC-ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcE
Q 002024 431 ---LVDLRTLRLEDCYLGDL-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEE 506 (979)
Q Consensus 431 ---l~~L~~L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~ 506 (979)
+++|++|+|++|.++.+ ..++++++|++|++++|.+..+|..+.++++|++|++++|.....+|.. +..+++|+.
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~-~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCC-TTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHH-hcCCCCCCE
Confidence 99999999999999888 4699999999999999999999999999999999999999988888887 899999999
Q ss_pred EEcccCccccccccccchhccccccccceecccccCC-cCCCCC-CCCCCCCeEEEE
Q 002024 507 FYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQN-SILPSH-MPFQHLPNFTIA 561 (979)
Q Consensus 507 L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~-~~~~~L~~L~i~ 561 (979)
|++++|..... ....+..+++|+.|+++++.. ..+|.. ..+++|+.+.+.
T Consensus 258 L~L~~n~~~~~-----~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 258 LILKDCSNLLT-----LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EECTTCTTCCB-----CCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred EECCCCCchhh-----cchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 99999866432 335688999999999998654 444544 567777777653
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.9e-16 Score=168.66 Aligned_cols=189 Identities=21% Similarity=0.264 Sum_probs=153.5
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC-
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY- 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~- 443 (979)
+.++.+++.++.+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 67888899999888533 57999999999999999988899999999999999 5664457889999999999999997
Q ss_pred CCCC--ccccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 444 LGDL--SVIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 444 l~~l--~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
++.+ ..+..+++|++|++++|.+..+ |..+.++++|++|++++|. +..++...+..+++|++|++++|....
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 167 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISS---- 167 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCE----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccc----
Confidence 8877 4688999999999999999877 5678999999999999975 667776668899999999999986531
Q ss_pred ccchhccccccccceecccccCCcCCCC-C-CCCCCCCeEEEE
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNSILPS-H-MPFQHLPNFTIA 561 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~i~ 561 (979)
.....+..+++|+.|+++++....... . ..+++|+.|++.
T Consensus 168 -~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 168 -VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp -ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred -cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 122347788999999999887654422 1 344555555543
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=9.7e-16 Score=178.85 Aligned_cols=156 Identities=19% Similarity=0.181 Sum_probs=118.7
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
.++.+++++|.++.+|.... ++|+.|++++|.+..+|. .+++|++|+|+++....+|. .+++|++|+|++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 47889999999998886443 899999999999988876 47899999999944337776 67899999999998
Q ss_pred CCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccc
Q 002024 444 LGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAK 523 (979)
Q Consensus 444 l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 523 (979)
++.++. .+++|++|++++|.+..+|.. +++|++|++++|. +..+|. .+.+|+.|++++|....
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~----~~~~L~~L~L~~N~l~~------- 175 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPA----LPSELCKLWAYNNQLTS------- 175 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSC-------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCC----ccCCCCEEECCCCCCCC-------
Confidence 888866 678899999999998888864 4789999999864 566664 34678888888775421
Q ss_pred hhccccccccceecccccCCcCC
Q 002024 524 VVELQALTRLTNLMFHFPQNSIL 546 (979)
Q Consensus 524 ~~~l~~l~~L~~L~l~~~~~~~~ 546 (979)
+. ..+++|+.|+++++....+
T Consensus 176 l~--~~~~~L~~L~Ls~N~l~~l 196 (622)
T 3g06_A 176 LP--MLPSGLQELSVSDNQLASL 196 (622)
T ss_dssp CC--CCCTTCCEEECCSSCCSCC
T ss_pred Cc--ccCCCCcEEECCCCCCCCC
Confidence 11 3456777777776665433
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.69 E-value=2.6e-16 Score=173.17 Aligned_cols=202 Identities=20% Similarity=0.245 Sum_probs=158.4
Q ss_pred ccccCCCCCcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcC-cc
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPS-LS 429 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~-~~ 429 (979)
+..++. ...+++++|++++|.++.++. +.++++|+.|++++|.+..+++..|..+++|++|+|+++....+|.. +.
T Consensus 43 l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 121 (353)
T 2z80_A 43 LNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121 (353)
T ss_dssp CSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHT
T ss_pred cccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhC
Confidence 444443 334689999999999998875 66999999999999999999888899999999999999433377765 89
Q ss_pred CCcCCCEEEeCCCCCCCCc---cccCCcCCcEEEcccC-cCccc-chhhccCccccEEecCCCCCccccCcchhccCcCC
Q 002024 430 FLVDLRTLRLEDCYLGDLS---VIGELSNLEILSLCRS-SIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL 504 (979)
Q Consensus 430 ~l~~L~~L~L~~~~l~~l~---~i~~L~~L~~L~Ls~~-~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L 504 (979)
.+++|++|++++|+++.++ .+.++++|++|++++| .+..+ |..+.++++|++|++++|. +..++...+..+++|
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKSLKSIQNV 200 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTTCSEE
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHHHhccccC
Confidence 9999999999999998885 4889999999999999 57777 4679999999999999976 444433338999999
Q ss_pred cEEEcccCccccccccccchhccccccccceecccccCCcCCCCC-----CCCCCCCeEEEE
Q 002024 505 EEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH-----MPFQHLPNFTIA 561 (979)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~i~ 561 (979)
++|++++|... ......+..+++|+.|+++++.....+.. .....++.+.+.
T Consensus 201 ~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 201 SHLILHMKQHI-----LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEECSCST-----THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred CeecCCCCccc-----cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 99999988642 11112345688999999998877654322 234445555544
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.69 E-value=1e-18 Score=200.70 Aligned_cols=58 Identities=26% Similarity=0.363 Sum_probs=27.6
Q ss_pred CccEEEecC-CcCCCC-CcCccCCcCCCEEEeCCCCCCCC------ccccCCcCCcEEEcccCcCc
Q 002024 410 DLKVLDLSY-ILPLSL-PPSLSFLVDLRTLRLEDCYLGDL------SVIGELSNLEILSLCRSSIK 467 (979)
Q Consensus 410 ~L~~L~L~~-~~~~~~-p~~~~~l~~L~~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~l~ 467 (979)
+|++|+|++ .+.... ...+..+++|++|+|++|.++.. ..+..+++|++|++++|.+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 69 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCH
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCC
Confidence 455566655 322111 11244555566666665554422 23444555555555555544
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=8.3e-17 Score=173.40 Aligned_cols=174 Identities=25% Similarity=0.170 Sum_probs=110.8
Q ss_pred EEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCC---CcCccCCcCCCEEEeCCCC
Q 002024 367 GISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSL---PPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 367 ~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~---p~~~~~l~~L~~L~L~~~~ 443 (979)
.++.+++.++.+|... .++++.|++++|.+..++..+|.++++|++|+|+++..... |..+..+++|++|+|++|.
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 5666666677666422 25777777777777777777677777777777777322122 4555567777777777777
Q ss_pred CCCC-ccccCCcCCcEEEcccCcCcccch--hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 444 LGDL-SVIGELSNLEILSLCRSSIKEIPE--TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 444 l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~--~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
+..+ ..+..+++|++|++++|.+..++. .+.++++|++|++++|. +...+...+..+++|++|++++|....
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~---- 164 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQE---- 164 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEGG----
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCcccc----
Confidence 6666 346677777777777777776653 56777777777777764 333333336677777777777664421
Q ss_pred ccchhccccccccceecccccCCcCC
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNSIL 546 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~~~ 546 (979)
......+..+++|+.|+++++.....
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEE
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCc
Confidence 01224456667777777776655433
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=1.7e-15 Score=176.73 Aligned_cols=114 Identities=24% Similarity=0.191 Sum_probs=91.5
Q ss_pred CCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccC
Q 002024 385 PKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRS 464 (979)
Q Consensus 385 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~ 464 (979)
.+++.|++++|.+..+|..++ ++|++|+|+++....+|. .+++|++|+|++|.++.++. .+++|++|++++|
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 458899999999998887643 789999999943337776 57899999999999888866 7889999999999
Q ss_pred cCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 465 SIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 465 ~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
.+..+|. .+++|++|++++|. +..+|.. +++|++|++++|..
T Consensus 112 ~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 112 PLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQL 153 (622)
T ss_dssp CCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCC
T ss_pred cCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcC
Confidence 9988887 67889999998864 6667753 47888888877643
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=5.9e-16 Score=166.23 Aligned_cols=192 Identities=18% Similarity=0.226 Sum_probs=167.1
Q ss_pred CCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
..+++++.|+++++.+..++.+..+++|+.|++++|.+..+++ +..+++|++|+|+++....++ .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 3567899999999999999988899999999999999999887 899999999999994442554 7899999999999
Q ss_pred CCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccc
Q 002024 440 EDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 440 ~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
++|.++.++.+..+++|++|++++|.+..++. +.++++|++|++++|. +..++. +..+++|+.|++++|...
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~---- 186 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKIS---- 186 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccC----
Confidence 99999999889999999999999999998876 8999999999999974 666766 789999999999988653
Q ss_pred cccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEccc
Q 002024 520 TNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVS 565 (979)
Q Consensus 520 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~ 565 (979)
.+..+..+++|+.|+++++.....+....+++|+.|++..+..
T Consensus 187 ---~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 187 ---DISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ---CCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEE
T ss_pred ---cChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCee
Confidence 1233788999999999999988887778899999999987543
No 69
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=176.10 Aligned_cols=185 Identities=25% Similarity=0.348 Sum_probs=154.7
Q ss_pred ccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCc-Cc
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP-SL 428 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~-~~ 428 (979)
+..++. ....+++.|++++|.+..++ .+.++++|+.|+|++|.+..+++..|..+++|++|+|++ .+. .+|. .|
T Consensus 55 l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 132 (440)
T 3zyj_A 55 LREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAF 132 (440)
T ss_dssp CSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTS
T ss_pred cCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHh
Confidence 444443 34478999999999999876 466999999999999999999999999999999999999 555 6654 68
Q ss_pred cCCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcccC-cCcccch-hhccCccccEEecCCCCCccccCcchhccCcCC
Q 002024 429 SFLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCRS-SIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL 504 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~-~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L 504 (979)
..+++|++|+|++|.++.++ .+.++++|++|++++| .+..++. .+.++++|++|++++|. +..+|. +..+++|
T Consensus 133 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L 209 (440)
T 3zyj_A 133 VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKL 209 (440)
T ss_dssp CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSC
T ss_pred hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCccc
Confidence 99999999999999998884 5889999999999995 6777765 68999999999999974 778886 8999999
Q ss_pred cEEEcccCccccccccccchhccccccccceecccccCCcCCC
Q 002024 505 EEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILP 547 (979)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 547 (979)
+.|++++|... ......+..+++|+.|+++.+....++
T Consensus 210 ~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 210 DELDLSGNHLS-----AIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CEEECTTSCCC-----EECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CEEECCCCccC-----ccChhhhccCccCCEEECCCCceeEEC
Confidence 99999998653 222367788999999999988765443
No 70
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=7.1e-16 Score=175.85 Aligned_cols=184 Identities=26% Similarity=0.340 Sum_probs=153.7
Q ss_pred ccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCc
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSL 428 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~ 428 (979)
+..++. ...+++++|++++|.+..++ .+.++++|+.|+|++|.+..+++..|..+++|++|+|++ .+. .+| ..|
T Consensus 66 l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~ 143 (452)
T 3zyi_A 66 LSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAF 143 (452)
T ss_dssp CSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTS
T ss_pred cCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhh
Confidence 444442 33468999999999999875 466899999999999999999988999999999999999 555 555 458
Q ss_pred cCCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcccC-cCcccch-hhccCccccEEecCCCCCccccCcchhccCcCC
Q 002024 429 SFLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCRS-SIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL 504 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~-~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L 504 (979)
..+++|++|+|++|.++.++ .+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|. +..+++|
T Consensus 144 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L 220 (452)
T 3zyi_A 144 EYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMPN--LTPLVGL 220 (452)
T ss_dssp SSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC-CSSCCC--CTTCTTC
T ss_pred cccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc-cccccc--ccccccc
Confidence 99999999999999998874 5889999999999995 6777765 68999999999999975 677775 8899999
Q ss_pred cEEEcccCccccccccccchhccccccccceecccccCCcCC
Q 002024 505 EEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSIL 546 (979)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 546 (979)
+.|++++|... ......+..+++|+.|+++++.....
T Consensus 221 ~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~ 257 (452)
T 3zyi_A 221 EELEMSGNHFP-----EIRPGSFHGLSSLKKLWVMNSQVSLI 257 (452)
T ss_dssp CEEECTTSCCS-----EECGGGGTTCTTCCEEECTTSCCCEE
T ss_pred cEEECcCCcCc-----ccCcccccCccCCCEEEeCCCcCceE
Confidence 99999998654 22336788899999999998876544
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=7.8e-17 Score=174.21 Aligned_cols=262 Identities=13% Similarity=0.049 Sum_probs=165.3
Q ss_pred ccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCC
Q 002024 365 LTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDC 442 (979)
Q Consensus 365 l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~ 442 (979)
++..+++++.+...+. +..+++|+.|++++|.+..+++..|..+++|++|+|+++.....++ +..+++|++|++++|
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC
Confidence 3444555555553331 2256788888888888888888778888888888888843323443 788888888888888
Q ss_pred CCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccccc
Q 002024 443 YLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNA 522 (979)
Q Consensus 443 ~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 522 (979)
.++.++ ..++|++|++++|.+..++. ..+++|++|++++|. +..++...+..+++|++|++++|.... .
T Consensus 91 ~l~~l~---~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~ 159 (317)
T 3o53_A 91 YVQELL---VGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-----V 159 (317)
T ss_dssp EEEEEE---ECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCE-----E
T ss_pred cccccc---CCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCc-----c
Confidence 766543 44788888888888887764 346788888888865 555555447788888888888875531 1
Q ss_pred chhcc-ccccccceecccccCCcCCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHH
Q 002024 523 KVVEL-QALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVK 601 (979)
Q Consensus 523 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 601 (979)
....+ ..+++|+.|+++++....++....+++|+.|++..+.... .+.. .
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~----------------------------l~~~-~ 210 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF----------------------------MGPE-F 210 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE----------------------------ECGG-G
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc----------------------------chhh-h
Confidence 22333 4678888888888877766665567777777765432210 0001 1
Q ss_pred HHhcccceeecccccCccccccccccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccce
Q 002024 602 DLLKRSEFLFLHEFIGVQDIDGDLISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFV 675 (979)
Q Consensus 602 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 675 (979)
..+++|+.|+++++.. ......+ ..+++|+.|++++++-...... .....+++|+.|.+.++..++
T Consensus 211 ~~l~~L~~L~L~~N~l-~~l~~~~--~~l~~L~~L~l~~N~~~~~~~~-----~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 211 QSAAGVTWISLRNNKL-VLIEKAL--RFSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGGTTCSEEECTTSCC-CEECTTC--CCCTTCCEEECTTCCCBHHHHH-----HHHHTCHHHHHHHHHHHHHHH
T ss_pred cccCcccEEECcCCcc-cchhhHh--hcCCCCCEEEccCCCccCcCHH-----HHHhccccceEEECCCchhcc
Confidence 1246677777766533 2333333 3467777777777633201000 122345566666666554443
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=4.7e-15 Score=156.16 Aligned_cols=191 Identities=27% Similarity=0.375 Sum_probs=141.3
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcC-ccCCcCCCEEEeCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPS-LSFLVDLRTLRLED 441 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~-~~~l~~L~~L~L~~ 441 (979)
..+.++++++.++.+|.... ++++.|++++|.+..+++..|..+++|++|+|++ .+. .+|.. |..+++|++|+|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCC
Confidence 45678888888888775332 6788888888888888877788888888888888 444 55543 57788888888888
Q ss_pred CCCCCCc--cccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccc
Q 002024 442 CYLGDLS--VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDC 518 (979)
Q Consensus 442 ~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 518 (979)
|.++.++ .+..+++|++|++++|.+..+|. .+.++++|++|++++|. +..+|...+..+++|++|++++|....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~-- 171 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKR-- 171 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSC--
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcE--
Confidence 8877773 46788888888888888887754 56788888888888864 666776667788888888888775431
Q ss_pred ccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEE
Q 002024 519 ETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAV 562 (979)
Q Consensus 519 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~ 562 (979)
.....+..+++|+.|+++.+....++.. ..+++|+.|.+..
T Consensus 172 ---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 172 ---VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214 (270)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred ---eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecC
Confidence 1223467778888888888877766653 4577788877754
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=1.1e-16 Score=172.93 Aligned_cols=265 Identities=15% Similarity=0.114 Sum_probs=182.4
Q ss_pred CceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccC
Q 002024 386 KLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRS 464 (979)
Q Consensus 386 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~ 464 (979)
.++.++++.+.+...+...+..+++|++|+|++ .+....|..|..+++|++|+|++|.++....+..+++|++|++++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNN 90 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSS
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCC
Confidence 456667788888888888888899999999999 5653444789999999999999999887777999999999999999
Q ss_pred cCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecccccCCc
Q 002024 465 SIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 465 ~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
.+..+| .+++|++|++++|. +..++. ..+++|++|++++|.... .....+..+++|+.|+++++...
T Consensus 91 ~l~~l~----~~~~L~~L~l~~n~-l~~~~~---~~~~~L~~L~l~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 91 YVQELL----VGPSIETLHAANNN-ISRVSC---SRGQGKKNIYLANNKITM-----LRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp EEEEEE----ECTTCCEEECCSSC-CSEEEE---CCCSSCEEEECCSSCCCS-----GGGBCTGGGSSEEEEECTTSCCC
T ss_pred cccccc----CCCCcCEEECCCCc-cCCcCc---cccCCCCEEECCCCCCCC-----ccchhhhccCCCCEEECCCCCCC
Confidence 988776 34899999999965 566654 347889999999886532 12245677889999999887653
Q ss_pred CCCCCCCCCCCCeEEEEEcccccccccccccccccccccccccccccccccchHHHHHHhcccceeecccccCccccccc
Q 002024 545 ILPSHMPFQHLPNFTIAVRVSWEASDFILSTSSVNKYSTRMILSHDMRFSPLLGWVKDLLKRSEFLFLHEFIGVQDIDGD 624 (979)
Q Consensus 545 ~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 624 (979)
..+ +..+...+++|++|+++++... .. +.
T Consensus 158 ~~~-------------------------------------------------~~~~~~~l~~L~~L~L~~N~l~-~~-~~ 186 (317)
T 3o53_A 158 TVN-------------------------------------------------FAELAASSDTLEHLNLQYNFIY-DV-KG 186 (317)
T ss_dssp EEE-------------------------------------------------GGGGGGGTTTCCEEECTTSCCC-EE-EC
T ss_pred ccc-------------------------------------------------HHHHhhccCcCCEEECCCCcCc-cc-cc
Confidence 211 0111112366777777655432 22 22
Q ss_pred cccCCcccccEEEEeccCCceEEeecccccCCcccccccchhccccCccceeecccCccCCCCCCCccEEeeeccCCccc
Q 002024 625 LISGGFTELKCLTLQSCDNVKYLLNTLERAAPHETFHNLEELTIYSNHSFVEICHGQVLPAGSFNKLKRLDVKWCQNILN 704 (979)
Q Consensus 625 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 704 (979)
. ..+++|++|++++| .++.++. ....+++|++|+++++ .++.++. ....+++|+.|++++++....
T Consensus 187 ~--~~l~~L~~L~Ls~N-~l~~l~~------~~~~l~~L~~L~L~~N-~l~~l~~----~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 187 Q--VVFAKLKTLDLSSN-KLAFMGP------EFQSAAGVTWISLRNN-KLVLIEK----ALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp C--CCCTTCCEEECCSS-CCCEECG------GGGGGTTCSEEECTTS-CCCEECT----TCCCCTTCCEEECTTCCCBHH
T ss_pred c--cccccCCEEECCCC-cCCcchh------hhcccCcccEEECcCC-cccchhh----HhhcCCCCCEEEccCCCccCc
Confidence 2 23778888888887 5555432 2345667888888765 3333322 134567888888887765422
Q ss_pred ccchhHHHhhccCceEeeecccccc
Q 002024 705 IAPIHLLRRLKNLEYCSVFFCASLL 729 (979)
Q Consensus 705 ~~~~~~~~~l~~L~~L~l~~c~~l~ 729 (979)
. ...++..+++|+.+++.++..+.
T Consensus 253 ~-~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 253 T-LRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp H-HHHHHHTCHHHHHHHHHHHHHHH
T ss_pred C-HHHHHhccccceEEECCCchhcc
Confidence 2 22346667777777776655443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=3.8e-15 Score=158.16 Aligned_cols=194 Identities=20% Similarity=0.183 Sum_probs=160.7
Q ss_pred CcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeC
Q 002024 361 TFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLE 440 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~ 440 (979)
...+++.++++++.++.+|... .++++.|++++|.+..+++..|..+++|++|+|+++....++.. ..+++|++|+|+
T Consensus 8 ~l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred ccCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 4567889999999999998544 37899999999999999888899999999999999433255543 789999999999
Q ss_pred CCCCCCCc-cccCCcCCcEEEcccCcCcccc-hhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccc
Q 002024 441 DCYLGDLS-VIGELSNLEILSLCRSSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDC 518 (979)
Q Consensus 441 ~~~l~~l~-~i~~L~~L~~L~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 518 (979)
+|.++.++ .+..+++|++|++++|.+..+| ..|.++++|++|++++|. +..+|.+.+..+++|+.|++++|....
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~-- 162 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTE-- 162 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSC--
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCc--
Confidence 99998884 5788999999999999999887 578999999999999964 677888778899999999999886531
Q ss_pred ccccchhccccccccceecccccCCcCCCCC-CCCCCCCeEEEEE
Q 002024 519 ETNAKVVELQALTRLTNLMFHFPQNSILPSH-MPFQHLPNFTIAV 562 (979)
Q Consensus 519 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~i~~ 562 (979)
.....+..+++|+.|+++.+....+|.. ....+|+.+.+..
T Consensus 163 ---l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~ 204 (290)
T 1p9a_G 163 ---LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG 204 (290)
T ss_dssp ---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred ---cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence 1224467899999999999998888776 5667888888764
No 75
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.63 E-value=1.7e-15 Score=163.12 Aligned_cols=204 Identities=20% Similarity=0.195 Sum_probs=162.9
Q ss_pred ccccCCCCCcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccC--hhhhcCCCCccEEEecCCcCCCCCcCc
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIP--DKFFQGMKDLKVLDLSYILPLSLPPSL 428 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~p~~~ 428 (979)
+..++. ...+++++|++++|.++.+|. +.++++|+.|++++|.+..+. +..+..+++|++|+|+++....+|..+
T Consensus 19 l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~ 97 (306)
T 2z66_A 19 LTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 97 (306)
T ss_dssp CSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEE
T ss_pred cccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhc
Confidence 334443 334689999999999999885 468999999999999988552 234567999999999994333788889
Q ss_pred cCCcCCCEEEeCCCCCCCC---ccccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCcc-ccCcchhccCcC
Q 002024 429 SFLVDLRTLRLEDCYLGDL---SVIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLA-LIPHGVISQLDK 503 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l---~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~-~~p~~~l~~L~~ 503 (979)
..+++|++|++++|.++.+ ..+..+++|++|++++|.+... |..+.++++|++|++++|.... .+|.. +..+++
T Consensus 98 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~ 176 (306)
T 2z66_A 98 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRN 176 (306)
T ss_dssp ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTT
T ss_pred CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcC
Confidence 9999999999999987776 3688999999999999988854 5678999999999999976443 35555 899999
Q ss_pred CcEEEcccCccccccccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEEc
Q 002024 504 LEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAVR 563 (979)
Q Consensus 504 L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~ 563 (979)
|++|++++|.... .....+..+++|+.|+++++.....+.. ..+++|+.|++..+
T Consensus 177 L~~L~Ls~n~l~~-----~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 177 LTFLDLSQCQLEQ-----LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp CCEEECTTSCCCE-----ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred CCEEECCCCCcCC-----cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCC
Confidence 9999999986532 2235678899999999999988776653 67788999887644
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=6.7e-15 Score=155.00 Aligned_cols=175 Identities=27% Similarity=0.387 Sum_probs=150.5
Q ss_pred cCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEE
Q 002024 362 FEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTL 437 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L 437 (979)
..++++|++++|.+..++. +.++++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+| ..+..+++|++|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAEL 114 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEE
Confidence 4679999999999998874 66899999999999999999999999999999999999 555 555 567899999999
Q ss_pred EeCCCCCCCCc--cccCCcCCcEEEcccCcCcccchh-hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 438 RLEDCYLGDLS--VIGELSNLEILSLCRSSIKEIPET-FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 438 ~L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
++++|.++.++ .++.+++|++|++++|.+..+|.. +..+++|++|++++|. +..++...+..+++|++|++++|..
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHhccCCCcCEEECCCCcC
Confidence 99999998884 488999999999999999998764 8999999999999965 6777776688999999999999865
Q ss_pred ccccccccchhccccccccceecccccCC
Q 002024 515 NWDCETNAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 515 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
.. .....+..+++|+.|+++++..
T Consensus 194 ~~-----~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 194 KR-----VPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SC-----CCTTTTTTCTTCCEEECCSSCB
T ss_pred Cc-----CCHHHhccccCCCEEEecCCCe
Confidence 31 1224567889999999988764
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.63 E-value=4.5e-15 Score=157.05 Aligned_cols=195 Identities=22% Similarity=0.220 Sum_probs=160.9
Q ss_pred cCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEE
Q 002024 362 FEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~ 438 (979)
.+++++|++++|.++.++ .+.++++|+.|++++|.+..+++..|..+++|++|+|++ .+....+..|..+++|++|+
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 457999999999999887 466899999999999999999988899999999999999 55544457899999999999
Q ss_pred eCCCCCCCCc--cccCCcCCcEEEcccCcCcc--cchhhccCccccEEecCCCCCccccCcchhccCcCCc----EEEcc
Q 002024 439 LEDCYLGDLS--VIGELSNLEILSLCRSSIKE--IPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLE----EFYMW 510 (979)
Q Consensus 439 L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~--lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~----~L~l~ 510 (979)
+.+|.+..++ .++.+++|++|++++|.+.. +|..+.++++|++|++++|. +..++...+..+++|+ .|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecC
Confidence 9999988884 58999999999999999986 68899999999999999975 5666654477777777 88998
Q ss_pred cCccccccccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEEEEEc
Q 002024 511 NTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFTIAVR 563 (979)
Q Consensus 511 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~i~~~ 563 (979)
+|...... .......+|+.|+++++....++.. ..+++|+.|++..+
T Consensus 186 ~n~l~~~~------~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 186 LNPMNFIQ------PGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp SSCCCEEC------TTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCcccccC------ccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 88653211 2222334899999999988877765 56889999888643
No 78
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.63 E-value=1.4e-14 Score=159.55 Aligned_cols=296 Identities=14% Similarity=0.098 Sum_probs=173.0
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC------CHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL------SIVKI 78 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~------~~~~~ 78 (979)
++..+..|+||++++++|.+.+..+ +++.|+|++|+|||+|+++++++.. ++|+++.... +...+
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHH
T ss_pred CCCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHH
Confidence 3445678999999999999988754 6899999999999999999987641 6788876543 56677
Q ss_pred HHHHHHHhCCc-----------------cc--ccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc---------hhhhcC
Q 002024 79 QGEIAAVLGLT-----------------IC--GIEESARAGYLWERIKMEKRILVILDDVWERID---------LQKVGI 130 (979)
Q Consensus 79 ~~~i~~~l~~~-----------------~~--~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~---------~~~l~~ 130 (979)
.+.+.+.+... .+ ..........+.+.....++.+||+||++.... +..+..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 77776665420 00 011112222232222222389999999977432 121211
Q ss_pred CCCCCCCCcEEEEEcCChhhhhc----------c--CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHc
Q 002024 131 PLGEDHEGCNILLTSRSQGVCNQ----------M--DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKC 198 (979)
Q Consensus 131 ~~~~~~~~~~iiiTtr~~~~~~~----------~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 198 (979)
+.....+.++|+|++...+... . .....+++.+|+.+|+.+++.+........ ...+.+..+++.+
T Consensus 158 -~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~-~~~~~~~~i~~~t 235 (350)
T 2qen_A 158 -AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD-VPENEIEEAVELL 235 (350)
T ss_dssp -HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHH
T ss_pred -HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHh
Confidence 1111247788888876532110 1 123589999999999999998765322111 2245688999999
Q ss_pred CCCchHHHHHHHHHhcCCChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHccCCCCccccHH
Q 002024 199 SGLPIAILTVGRALKNRNNKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCCLFPEDYNIKIE 278 (979)
Q Consensus 199 ~g~Plal~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~ 278 (979)
+|+|+++..++..+..... .+ .....+... ....+...+.-.+.. ++. .+.++..+|. + ..+..
T Consensus 236 gG~P~~l~~~~~~~~~~~~--~~-~~~~~~~~~-------~~~~~~~~l~~l~~~-~~~-~~~~l~~la~--g--~~~~~ 299 (350)
T 2qen_A 236 DGIPGWLVVFGVEYLRNGD--FG-RAMKRTLEV-------AKGLIMGELEELRRR-SPR-YVDILRAIAL--G--YNRWS 299 (350)
T ss_dssp TTCHHHHHHHHHHHHHHCC--HH-HHHHHHHHH-------HHHHHHHHHHHHHHH-CHH-HHHHHHHHHT--T--CCSHH
T ss_pred CCCHHHHHHHHHHHhcccc--Hh-HHHHHHHHH-------HHHHHHHHHHHHHhC-Chh-HHHHHHHHHh--C--CCCHH
Confidence 9999999998876432111 11 111111100 000011111111112 443 7888888886 2 23444
Q ss_pred HHHHhhe-eeeeecccccHHHHHHHHHHHHHHhhhceeEEeCCcceEEechhHHHHHH
Q 002024 279 VLMRYGM-GLRWFKDVETLEEARVRTHAIVSTLISSFLLIAGDEGYVTMHDVVRDVAL 335 (979)
Q Consensus 279 ~l~~~w~-~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~mh~l~~~~~~ 335 (979)
.+..... +.| + . .......+++.|.+.+++......+...|++++++.+
T Consensus 300 ~l~~~~~~~~~---~-~----~~~~~~~~l~~L~~~gli~~~~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 300 LIRDYLAVKGT---K-I----PEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHHHTTC---C-C----CHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHHHT
T ss_pred HHHHHHHHHhC---C-C----CHHHHHHHHHHHHhCCCEEecCCEEEEecHHHHHHHc
Confidence 5443221 110 0 0 1233445689999999998744334455788887653
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=4.5e-15 Score=153.24 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=165.1
Q ss_pred ccccCCCCCcCCccEEEccCCcccccCC--cCCCCCceEEEccCCC-CcccChhhhcCCCCccEEEecC-CcCCCCC-cC
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENS-PLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PS 427 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~ 427 (979)
+..++. ...+++.|++++|.++.++. +.++++|+.|++++|. +..+++..|..+++|++|++++ +....+| ..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~ 100 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA 100 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence 444554 44589999999999998885 5689999999999997 8899988899999999999997 4333555 67
Q ss_pred ccCCcCCCEEEeCCCCCCCCccccCCcCCc---EEEcccC-cCcccch-hhccCcccc-EEecCCCCCccccCcchhccC
Q 002024 428 LSFLVDLRTLRLEDCYLGDLSVIGELSNLE---ILSLCRS-SIKEIPE-TFCRLSHLW-LLDLDHCRQLALIPHGVISQL 501 (979)
Q Consensus 428 ~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~---~L~Ls~~-~l~~lp~-~i~~L~~L~-~L~l~~c~~~~~~p~~~l~~L 501 (979)
|..+++|++|++++|.++.++.+..+++|+ +|++++| .+..+|. .+.++++|+ +|++++|. +..+|...+..
T Consensus 101 f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~- 178 (239)
T 2xwt_C 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNG- 178 (239)
T ss_dssp EECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTT-
T ss_pred hCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCC-
Confidence 899999999999999999898788888888 9999999 9998875 589999999 99999965 66888875555
Q ss_pred cCCcEEEcccCc-cccccccccchhccccc-cccceecccccCCcCCCCCCCCCCCCeEEEE
Q 002024 502 DKLEEFYMWNTF-KNWDCETNAKVVELQAL-TRLTNLMFHFPQNSILPSHMPFQHLPNFTIA 561 (979)
Q Consensus 502 ~~L~~L~l~~~~-~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~ 561 (979)
++|+.|++++|. .. ......+..+ ++|+.|+++.+..+.++.. .+++|+.|.+.
T Consensus 179 ~~L~~L~L~~n~~l~-----~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 179 TKLDAVYLNKNKYLT-----VIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp CEEEEEECTTCTTCC-----EECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred CCCCEEEcCCCCCcc-----cCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 899999999984 42 1122456778 9999999999988877766 78889888764
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=1.5e-14 Score=150.38 Aligned_cols=173 Identities=25% Similarity=0.324 Sum_probs=132.9
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDC 442 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~ 442 (979)
..++++++++.++.+|.... ++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45678888888888885443 6888899999888888887888888999999988 555444556788888999999888
Q ss_pred CCCCCc--cccCCcCCcEEEcccCcCcccchh-hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccc
Q 002024 443 YLGDLS--VIGELSNLEILSLCRSSIKEIPET-FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 443 ~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
.++.++ .+..+++|++|+|++|.+..+|.. +.++++|++|++++| .+..+|...+..+++|++|++++|....
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~--- 169 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS--- 169 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCc---
Confidence 888773 577888899999988888888754 678888999998886 4667776557888888888888875531
Q ss_pred cccchhccccccccceecccccCC
Q 002024 520 TNAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 520 ~~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
.....+..+++|+.|+++++..
T Consensus 170 --~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 --VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp --CCTTTTTTCTTCCEEECCSCCB
T ss_pred --cCHHHHhCCCCCCEEEeeCCce
Confidence 1123566777888888777654
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.60 E-value=1.5e-14 Score=155.15 Aligned_cols=181 Identities=22% Similarity=0.279 Sum_probs=155.0
Q ss_pred ccccCCCCCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCc
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLV 432 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~ 432 (979)
+..++....++++++|++++|.+..++.+..+++|+.|++++|.+..++ .+..+++|++|+|+++....++. +..++
T Consensus 53 i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~ 129 (308)
T 1h6u_A 53 VTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLS 129 (308)
T ss_dssp CCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCT
T ss_pred ccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCC
Confidence 3445556678899999999999999888889999999999999999875 38899999999999944435654 89999
Q ss_pred CCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccC
Q 002024 433 DLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNT 512 (979)
Q Consensus 433 ~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~ 512 (979)
+|++|++++|.++.++.+..+++|++|++++|.+..++. +.++++|++|++++|. +..++. +..+++|++|++++|
T Consensus 130 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 130 NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPNLIEVHLKNN 205 (308)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECTTS
T ss_pred CCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCCCCEEEccCC
Confidence 999999999999999889999999999999999999887 9999999999999975 666765 789999999999998
Q ss_pred ccccccccccchhccccccccceecccccCCcCCC
Q 002024 513 FKNWDCETNAKVVELQALTRLTNLMFHFPQNSILP 547 (979)
Q Consensus 513 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 547 (979)
.... +..+..+++|+.|+++++.....+
T Consensus 206 ~l~~-------~~~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 206 QISD-------VSPLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCB-------CGGGTTCTTCCEEEEEEEEEECCC
T ss_pred ccCc-------cccccCCCCCCEEEccCCeeecCC
Confidence 6531 124788999999999988765443
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=9.8e-15 Score=153.82 Aligned_cols=173 Identities=25% Similarity=0.358 Sum_probs=103.7
Q ss_pred CcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEEE
Q 002024 361 TFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTLR 438 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L~ 438 (979)
.++.++.+++.++.+..++.+..+++|+.|++++|.+..++ .+..+++|++|+|++ .+. .++ ..+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEE
Confidence 34556666666666666666666666666666666666543 356666666666666 344 333 3356666666666
Q ss_pred eCCCCCCCCc--cccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccc
Q 002024 439 LEDCYLGDLS--VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKN 515 (979)
Q Consensus 439 L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~ 515 (979)
+++|.++.++ .++++++|++|++++|.+..+|. .+.++++|++|++++|. +..++...+..+++|++|++++|...
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCC
Confidence 6666666553 25666666666666666666554 34666666666666653 44555544566666666666666442
Q ss_pred cccccccchhccccccccceecccccC
Q 002024 516 WDCETNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 516 ~~~~~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
. .....+..+++|+.|+++.+.
T Consensus 195 ~-----~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 195 S-----VPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp C-----CCTTTTTTCTTCCEEECCSSC
T ss_pred c-----cCHHHHhCCcCCCEEEccCCC
Confidence 1 111335566666666666554
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.59 E-value=7.9e-15 Score=155.89 Aligned_cols=171 Identities=25% Similarity=0.292 Sum_probs=142.3
Q ss_pred CCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
..++.++.|++++|.+..++.+..+++|+.|++++|.+..+++ +..+++|++|+|+++....+| .+..+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-hhccCCCCCEEEC
Confidence 4567889999999999988888889999999999999998876 789999999999994442444 5889999999999
Q ss_pred CCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccc
Q 002024 440 EDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 440 ~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
++|.++.++.+..+++|++|++++|.+..+ ..+.++++|++|++++|. +..++. +..+++|++|++++|...
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~---- 191 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS---- 191 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCC----
Confidence 999999888899999999999999999888 578899999999999975 566665 788999999999888542
Q ss_pred cccchhccccccccceecccccCCc
Q 002024 520 TNAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 520 ~~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
.+..+..+++|+.|+++++...
T Consensus 192 ---~l~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 192 ---DLRALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ---BCGGGTTCTTCSEEEEEEEEEE
T ss_pred ---CChhhccCCCCCEEECcCCccc
Confidence 1244777888888888876653
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=7.4e-15 Score=155.41 Aligned_cols=172 Identities=20% Similarity=0.194 Sum_probs=135.7
Q ss_pred EEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCC
Q 002024 367 GISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLG 445 (979)
Q Consensus 367 ~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~ 445 (979)
.++..+..+..+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+....+..+..+++|++|+|++|.++
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EEECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred eEEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4556666777777543 36899999999999999988899999999999999 555334457899999999999999988
Q ss_pred CC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccc--cCcchhccCcCCcEEEcccCcccccccc
Q 002024 446 DL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLAL--IPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 446 ~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~--~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
.+ ..+.++++|++|++++|.+..++. .+.++++|++|++++|. +.. +|.. +..+++|++|++++|.....
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~--- 164 (276)
T 2z62_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI--- 164 (276)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE---
T ss_pred ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC---
Confidence 77 468999999999999999998865 69999999999999976 444 4655 89999999999999865321
Q ss_pred ccchhccccccccc----eecccccCCcCC
Q 002024 521 NAKVVELQALTRLT----NLMFHFPQNSIL 546 (979)
Q Consensus 521 ~~~~~~l~~l~~L~----~L~l~~~~~~~~ 546 (979)
....+..+++|+ .|+++++....+
T Consensus 165 --~~~~~~~l~~L~~l~l~L~ls~n~l~~~ 192 (276)
T 2z62_A 165 --YCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (276)
T ss_dssp --CGGGGHHHHTCTTCCEEEECCSSCCCEE
T ss_pred --CHHHhhhhhhccccceeeecCCCccccc
Confidence 123444455555 677777665433
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=1.5e-14 Score=152.45 Aligned_cols=160 Identities=28% Similarity=0.393 Sum_probs=109.1
Q ss_pred ccccCCCCCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccC
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSF 430 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~ 430 (979)
+..++....++++++|++++|.+..++.+..+++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+| ..+..
T Consensus 53 i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~ 131 (272)
T 3rfs_A 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDK 131 (272)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTT
T ss_pred cccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhcc
Confidence 344445556677777777777777766666777777777777777777777677777777777777 444 443 34677
Q ss_pred CcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEE
Q 002024 431 LVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEF 507 (979)
Q Consensus 431 l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L 507 (979)
+++|++|++++|.++.++ .++++++|++|++++|.+..+|. .+.++++|++|++++|. +..++...+..+++|+.|
T Consensus 132 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 210 (272)
T 3rfs_A 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 210 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEE
Confidence 777777777777776663 25677777777777777776654 35677777777777754 445555546777777777
Q ss_pred EcccCcc
Q 002024 508 YMWNTFK 514 (979)
Q Consensus 508 ~l~~~~~ 514 (979)
++++|..
T Consensus 211 ~l~~N~~ 217 (272)
T 3rfs_A 211 WLHDNPW 217 (272)
T ss_dssp ECCSSCB
T ss_pred EccCCCc
Confidence 7776643
No 86
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=9.5e-15 Score=150.81 Aligned_cols=136 Identities=20% Similarity=0.299 Sum_probs=114.5
Q ss_pred cccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCC--cCCCCC-cCccCCcCCCEEEeCC-CCCCCCc-
Q 002024 374 YIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYI--LPLSLP-PSLSFLVDLRTLRLED-CYLGDLS- 448 (979)
Q Consensus 374 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~--~~~~~p-~~~~~l~~L~~L~L~~-~~l~~l~- 448 (979)
.++.+|. -.++++.|++++|.+..+++..|..+++|++|+++++ +. .++ ..|..+++|++|++++ |.++.++
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 3777877 3458999999999999999988999999999999995 45 555 4789999999999998 7888774
Q ss_pred -cccCCcCCcEEEcccCcCcccchhhccCcccc---EEecCCCCCccccCcchhccCcCCc-EEEcccCc
Q 002024 449 -VIGELSNLEILSLCRSSIKEIPETFCRLSHLW---LLDLDHCRQLALIPHGVISQLDKLE-EFYMWNTF 513 (979)
Q Consensus 449 -~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~---~L~l~~c~~~~~~p~~~l~~L~~L~-~L~l~~~~ 513 (979)
.+.++++|++|++++|.+..+|. +..+++|+ +|++++|..+..+|...+..+++|+ .|++++|.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 57899999999999999999987 88888888 9999997567888876678888888 88887664
No 87
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=3.6e-14 Score=156.61 Aligned_cols=292 Identities=13% Similarity=0.127 Sum_probs=169.5
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-----CCHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-----LSIVKIQG 80 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-----~~~~~~~~ 80 (979)
+..+..|+||++++++|.+ +.. +++.|+|++|+|||+|++++++... . .++|+++... .+...+..
T Consensus 9 ~~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T 2fna_A 9 KDNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELN--L---PYIYLDLRKFEERNYISYKDFLL 79 (357)
T ss_dssp CCSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHT--C---CEEEEEGGGGTTCSCCCHHHHHH
T ss_pred CCCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcC--C---CEEEEEchhhccccCCCHHHHHH
Confidence 3356789999999999999 766 5899999999999999999998764 1 2678887643 34555555
Q ss_pred HHHHHhCC------------------ccccc--c------hHHHHHHHHHHHhc-C-CeEEEEEcCCCCcc-----chhh
Q 002024 81 EIAAVLGL------------------TICGI--E------ESARAGYLWERIKM-E-KRILVILDDVWERI-----DLQK 127 (979)
Q Consensus 81 ~i~~~l~~------------------~~~~~--~------~~~~~~~~~~~l~~-~-~~~LlvlDd~~~~~-----~~~~ 127 (979)
.+.+.+.. +.++. . .......+.+.+.. . ++.+|||||++... ++..
T Consensus 80 ~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~ 159 (357)
T 2fna_A 80 ELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLP 159 (357)
T ss_dssp HHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHH
T ss_pred HHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHH
Confidence 55544310 00000 0 01123334444432 1 48999999997642 2211
Q ss_pred hcCCCCCCCCCcEEEEEcCChhhhhc----------cC--CcceEEcCCCCHHHHHHHHHHHhCCC-CCCccchHHHHHH
Q 002024 128 VGIPLGEDHEGCNILLTSRSQGVCNQ----------MD--AQKIFIVRTLLEEESWILFREAAGTV-VENSDLNSIAREV 194 (979)
Q Consensus 128 l~~~~~~~~~~~~iiiTtr~~~~~~~----------~~--~~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~i 194 (979)
+...+.....+.++|+|++....... .. ....+++.+|+.+|+.+++.+.+... .+... ...|
T Consensus 160 ~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i 235 (357)
T 2fna_A 160 ALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVV 235 (357)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHH
T ss_pred HHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHH
Confidence 11111111246789999987643110 11 13689999999999999998765311 11111 2789
Q ss_pred HHHcCCCchHHHHHHHHHhcCCChhHHH-HHHHHHhhcCCCccCCchhhhhhhhh-hhh--ccCChhhHHHHHHHHccCC
Q 002024 195 AAKCSGLPIAILTVGRALKNRNNKYVWI-DAAQQLKKSTPTNIEGMHKDVISSLE-LSY--NYLESEEAKKLFLFCCLFP 270 (979)
Q Consensus 195 ~~~~~g~Plal~~~~~~l~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~l~-~s~--~~L~~~~~~~~~~~~~~fp 270 (979)
++.++|+|+++..++..+........|. ++.+.. ...+...+. +.+ ..+++. .+..+..+|.
T Consensus 236 ~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~-- 301 (357)
T 2fna_A 236 YEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-----------KKLILKEFENFLHGREIARKR-YLNIMRTLSK-- 301 (357)
T ss_dssp HHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----------HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT--
T ss_pred HHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-----------HHHHHHHHHHHhhccccccHH-HHHHHHHHHc--
Confidence 9999999999999987764322112221 111110 001111121 111 146553 7888888887
Q ss_pred CCccccHHHHHHhhe-eeeeecccccHHHHHHHHHHHHHHhhhceeEEeCCcceEEechhHHHHH
Q 002024 271 EDYNIKIEVLMRYGM-GLRWFKDVETLEEARVRTHAIVSTLISSFLLIAGDEGYVTMHDVVRDVA 334 (979)
Q Consensus 271 ~~~~~~~~~l~~~w~-~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~~~~~~~mh~l~~~~~ 334 (979)
+ . +...+..... ..|. + . .......+++.|.+.+++......+...|++++++.
T Consensus 302 g--~-~~~~l~~~~~~~~g~--~-~----~~~~~~~~L~~L~~~gli~~~~~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 C--G-KWSDVKRALELEEGI--E-I----SDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAF 356 (357)
T ss_dssp C--B-CHHHHHHHHHHHHCS--C-C----CHHHHHHHHHHHHHTTSEEESSSCEEESSHHHHHHT
T ss_pred C--C-CHHHHHHHHHHhcCC--C-C----CHHHHHHHHHHHHhCCCEEecCCEEEecCHHHHHhh
Confidence 2 2 4444432110 0010 0 0 123345678999999999875433444688888764
No 88
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.57 E-value=2.4e-14 Score=151.91 Aligned_cols=171 Identities=22% Similarity=0.258 Sum_probs=139.7
Q ss_pred cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEE
Q 002024 381 MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEIL 459 (979)
Q Consensus 381 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L 459 (979)
+.++++++.++++++.+..+|..+ .+++++|+|++ .+....|..|..+++|++|+|++|.++.++..+.+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 446789999999999999999765 36899999999 55534467899999999999999999988777899999999
Q ss_pred EcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceeccc
Q 002024 460 SLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFH 539 (979)
Q Consensus 460 ~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 539 (979)
++++|.+..+|..+..+++|++|++++|. +..+|.+.+..+++|++|++++|.... .....+..+++|+.|+++
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKT-----LPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCC-----CCTTTTTTCTTCCEEECT
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCc-----cChhhcccccCCCEEECC
Confidence 99999999999999999999999999964 777877668999999999999986532 122446788899999998
Q ss_pred ccCCcCCCCC--CCCCCCCeEEE
Q 002024 540 FPQNSILPSH--MPFQHLPNFTI 560 (979)
Q Consensus 540 ~~~~~~~~~~--~~~~~L~~L~i 560 (979)
.+..+.++.. ..+++|+.|.+
T Consensus 157 ~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 157 NNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCCccCHHHhcCcCCCCEEEC
Confidence 8877665543 23444444444
No 89
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.57 E-value=1e-14 Score=166.94 Aligned_cols=150 Identities=17% Similarity=0.131 Sum_probs=97.1
Q ss_pred CCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcc
Q 002024 383 ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLC 462 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls 462 (979)
.+++|+.|+|++|.+..+++..|..+++|++|+|+++.....++ +..+++|++|+|++|.++.++ ..++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECc
Confidence 34577777777777777777777777788888887733223333 777777888888777665543 33777788888
Q ss_pred cCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccc-cccccceeccccc
Q 002024 463 RSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQ-ALTRLTNLMFHFP 541 (979)
Q Consensus 463 ~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~ 541 (979)
+|.+..+|. ..+++|++|++++|. +..+++..++.+++|+.|++++|.... ..+..+. .+++|+.|+++++
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDT-----VNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCE-----EEGGGGGGGTTTCCEEECTTS
T ss_pred CCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCC-----cChHHHhhhCCcccEEecCCC
Confidence 777776654 246777778877765 344433336777777777777765431 1223333 5667777777666
Q ss_pred CCc
Q 002024 542 QNS 544 (979)
Q Consensus 542 ~~~ 544 (979)
...
T Consensus 180 ~l~ 182 (487)
T 3oja_A 180 FIY 182 (487)
T ss_dssp CCC
T ss_pred ccc
Confidence 543
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=1.1e-13 Score=143.87 Aligned_cols=153 Identities=27% Similarity=0.382 Sum_probs=135.1
Q ss_pred CcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCE
Q 002024 361 TFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRT 436 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~ 436 (979)
..++++.|++++|.+..++. +.++++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+| ..|..+++|++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCE
Confidence 34689999999999998763 56899999999999999999999899999999999999 555 554 66799999999
Q ss_pred EEeCCCCCCCCc--cccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCc
Q 002024 437 LRLEDCYLGDLS--VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 437 L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
|+|++|.++.++ .+..+++|++|+|++|.+..+|. .+.++++|++|++++|. +..++...+..+++|+.|++++|.
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 999999999884 37899999999999999999876 68999999999999975 667777668999999999999986
Q ss_pred cc
Q 002024 514 KN 515 (979)
Q Consensus 514 ~~ 515 (979)
..
T Consensus 191 ~~ 192 (251)
T 3m19_A 191 FD 192 (251)
T ss_dssp BC
T ss_pred ee
Confidence 53
No 91
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.54 E-value=1.8e-13 Score=154.24 Aligned_cols=303 Identities=16% Similarity=0.057 Sum_probs=176.8
Q ss_pred CCCCchhHHHHHHHHHHHh-c----C--CCceEEEE--EcCCCCcHHHHHHHHHHHhhhcc---CCC-eEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEAL-N----N--ENVSVIGL--CGMGGVGKTTLAKEIGKQVQESK---RYD-TVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l-~----~--~~~~~i~i--~G~~GiGKT~La~~~~~~~~~~~---~f~-~~~~~~~~~~~~ 74 (979)
.+..|+||++++++|.+.+ . + ...+.+.| +|++|+|||+||+.+++...... .++ .++|+.+....+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPN 99 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCS
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCC
Confidence 3578999999999999888 4 2 24567778 99999999999999998875321 122 467888877788
Q ss_pred HHHHHHHHHHHhCCcccc--cchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc--------chhhhcCCC---CCCC--CC
Q 002024 75 IVKIQGEIAAVLGLTICG--IEESARAGYLWERIK-MEKRILVILDDVWERI--------DLQKVGIPL---GEDH--EG 138 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~--------~~~~l~~~~---~~~~--~~ 138 (979)
...+...++.+++..... .+.......+.+.+. .+++++|||||++... .+..+...+ .... ..
T Consensus 100 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 179 (412)
T 1w5s_A 100 LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNR 179 (412)
T ss_dssp HHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCB
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCce
Confidence 999999999999765332 222333444444443 3679999999997642 122221111 1112 34
Q ss_pred cEEEEEcCChhhhhcc---------CCcceEEcCCCCHHHHHHHHHHHhCCC-CCCccchHHHHHHHHHcC------CCc
Q 002024 139 CNILLTSRSQGVCNQM---------DAQKIFIVRTLLEEESWILFREAAGTV-VENSDLNSIAREVAAKCS------GLP 202 (979)
Q Consensus 139 ~~iiiTtr~~~~~~~~---------~~~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~------g~P 202 (979)
..+|+||+...+...+ .....+.+++++.+++.++|..++... .+.....+.+..+++.++ |.|
T Consensus 180 v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 180 IGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcH
Confidence 5577788755432111 112239999999999999997654211 111223467888999999 999
Q ss_pred hHHHHHHHHHh------cCC--ChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHccCC--CC
Q 002024 203 IAILTVGRALK------NRN--NKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCCLFP--ED 272 (979)
Q Consensus 203 lal~~~~~~l~------~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp--~~ 272 (979)
..+..+..... +.. ....+..+...... ...+.-.+..||+. .+.++..++.+. ++
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~ 325 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGM 325 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCC
Confidence 76665543221 111 11222222221110 12345567788765 777777676542 23
Q ss_pred ccccHHHHHHhhe--e---eeeecccccHHHHHHHHHHHHHHhhhceeEEeC-----CcceEEechhH
Q 002024 273 YNIKIEVLMRYGM--G---LRWFKDVETLEEARVRTHAIVSTLISSFLLIAG-----DEGYVTMHDVV 330 (979)
Q Consensus 273 ~~~~~~~l~~~w~--~---~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~~-----~~~~~~mh~l~ 330 (979)
..++...+...+. + .|. ... ....+..+++.|...+++... ..+.|.+|.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 326 EWINAGLLRQRYEDASLTMYNV-KPR-----GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SSBCHHHHHHHHHHHHHHHSCC-CCC-----CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CCccHHHHHHHHHHHHHhhcCC-CCC-----CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 3455544433221 1 010 000 113344568999999998762 23456666554
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=6.8e-14 Score=148.64 Aligned_cols=185 Identities=22% Similarity=0.229 Sum_probs=155.2
Q ss_pred EEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCC
Q 002024 367 GISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGD 446 (979)
Q Consensus 367 ~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~ 446 (979)
.+.+..+.+..+....++++|+.|++++|.+..++. +..+++|++|+|+++....++. +..+++|++|++++|.++.
T Consensus 28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~ 104 (291)
T 1h6t_A 28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD 104 (291)
T ss_dssp HHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC
T ss_pred HHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC
Confidence 334555555555555678999999999999998864 7889999999999944336666 9999999999999999999
Q ss_pred CccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhc
Q 002024 447 LSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVE 526 (979)
Q Consensus 447 l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~ 526 (979)
++.+..+++|++|++++|.+..++ .+..+++|++|++++|. +..++. +..+++|++|++++|.... +..
T Consensus 105 ~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~-------~~~ 173 (291)
T 1h6t_A 105 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD-------IVP 173 (291)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCC-------CGG
T ss_pred ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCcccc-------chh
Confidence 999999999999999999999885 68999999999999975 566643 8999999999999986531 123
Q ss_pred cccccccceecccccCCcCCCCCCCCCCCCeEEEEEccc
Q 002024 527 LQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVS 565 (979)
Q Consensus 527 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~ 565 (979)
+..+++|+.|+++++....++....+++|+.|++..+..
T Consensus 174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 888999999999999988888778899999999987643
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=5.2e-14 Score=164.11 Aligned_cols=174 Identities=24% Similarity=0.280 Sum_probs=147.0
Q ss_pred CCCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEE
Q 002024 359 RDTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~ 438 (979)
...+..++.|++++|.+..++.+..+++|+.|+|++|.+..+++ +..+++|++|+|+++....+| .+..+++|++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEE
Confidence 34567888999999999999888899999999999999998876 789999999999994442544 789999999999
Q ss_pred eCCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccc
Q 002024 439 LEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDC 518 (979)
Q Consensus 439 L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~ 518 (979)
|++|.+..++.+..+++|++|+|++|.+..+ ..+..|++|+.|++++|. +..+++ +..+++|+.|++++|...
T Consensus 116 Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~--- 188 (605)
T 1m9s_A 116 LEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHIS--- 188 (605)
T ss_dssp CTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCC---
T ss_pred ecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEECcCCCCC---
Confidence 9999999998899999999999999999888 578999999999999975 555655 789999999999988653
Q ss_pred ccccchhccccccccceecccccCCcCC
Q 002024 519 ETNAKVVELQALTRLTNLMFHFPQNSIL 546 (979)
Q Consensus 519 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 546 (979)
.+..+..+++|+.|+++.+.....
T Consensus 189 ----~l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 189 ----DLRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ----BCGGGTTCTTCSEEECCSEEEECC
T ss_pred ----CChHHccCCCCCEEEccCCcCcCC
Confidence 235678889999999988776543
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=4.3e-14 Score=161.83 Aligned_cols=170 Identities=16% Similarity=0.126 Sum_probs=136.7
Q ss_pred CcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEE
Q 002024 361 TFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~ 438 (979)
..++++.|++++|.+..++ .+..+++|++|+|++|.+...++ |..+++|++|+|+++....+| ..++|++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC----CCCCcCEEE
Confidence 4558999999999999876 46689999999999999987766 889999999999994332444 348999999
Q ss_pred eCCCCCCCCccccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccc
Q 002024 439 LEDCYLGDLSVIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWD 517 (979)
Q Consensus 439 L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~ 517 (979)
+++|.++.++. ..+++|++|++++|.+..+ |..++++++|++|++++|......|..+...+++|++|++++|.....
T Consensus 106 L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 106 AANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp CCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 99999888743 3578999999999999977 558899999999999998654445555334899999999999865321
Q ss_pred cccccchhccccccccceecccccCCc
Q 002024 518 CETNAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 518 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
.....+++|+.|+++++...
T Consensus 185 -------~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 185 -------KGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp -------ECCCCCTTCCEEECCSSCCC
T ss_pred -------cccccCCCCCEEECCCCCCC
Confidence 23345888888888877654
No 95
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.52 E-value=1.3e-14 Score=156.19 Aligned_cols=81 Identities=25% Similarity=0.313 Sum_probs=37.3
Q ss_pred CCCccEEEecC-CcCCCCCcCc--cCCcCCCEEEeCCCCCCCC-ccccCC-----cCCcEEEcccCcCcccc-hhhccCc
Q 002024 408 MKDLKVLDLSY-ILPLSLPPSL--SFLVDLRTLRLEDCYLGDL-SVIGEL-----SNLEILSLCRSSIKEIP-ETFCRLS 477 (979)
Q Consensus 408 l~~L~~L~L~~-~~~~~~p~~~--~~l~~L~~L~L~~~~l~~l-~~i~~L-----~~L~~L~Ls~~~l~~lp-~~i~~L~ 477 (979)
+++|++|+|++ .+....|..+ ..+++|++|+|++|.++.. ..++.+ ++|++|++++|.+..++ ..+++++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 44555555555 3333344433 4455555555555544433 122233 45555555555544443 3444555
Q ss_pred cccEEecCCCC
Q 002024 478 HLWLLDLDHCR 488 (979)
Q Consensus 478 ~L~~L~l~~c~ 488 (979)
+|++|++++|.
T Consensus 174 ~L~~L~Ls~N~ 184 (312)
T 1wwl_A 174 ALSTLDLSDNP 184 (312)
T ss_dssp SCCEEECCSCT
T ss_pred CCCEEECCCCC
Confidence 55555555543
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.52 E-value=1e-13 Score=151.86 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=107.3
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCE-EEeCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRT-LRLEDC 442 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~-L~L~~~ 442 (979)
+.++.+++.++.+|... .++++.|+|++|.+..++++.|.++++|++|+|++ .+...+| ..|..+++|+. +.+.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45677888888888544 46899999999999999988899999999999998 4443455 46788888775 555567
Q ss_pred CCCCC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCccccCcchhccCc-CCcEEEcccC
Q 002024 443 YLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLD-KLEEFYMWNT 512 (979)
Q Consensus 443 ~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~-~L~~L~l~~~ 512 (979)
+++.+ ..+..+++|++|++++|.+..+|. .+....++..|++.++..+..++...+..+. .++.|++++|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 77777 357888888888888888887764 4556667778888776677777765444443 4556666554
No 97
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=5.9e-14 Score=139.81 Aligned_cols=148 Identities=19% Similarity=0.238 Sum_probs=100.5
Q ss_pred CCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEE
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~ 438 (979)
..+++++.|++++|.+..++.+..+++|+.|++++|.+..++ .+..+++|++|++++ .+....|..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 345667778888877777776667777777777777655543 366777777777777 44433566677777777777
Q ss_pred eCCCCCCC--CccccCCcCCcEEEcccCc-CcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCc
Q 002024 439 LEDCYLGD--LSVIGELSNLEILSLCRSS-IKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 439 L~~~~l~~--l~~i~~L~~L~~L~Ls~~~-l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
+++|.++. ...++.+++|++|++++|. +..+| .+.++++|++|++++|. +..++. +..+++|++|+++++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEeeCcc
Confidence 77777665 3556777777777777775 66665 56777777777777754 445552 6677777777776654
No 98
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.51 E-value=7.3e-14 Score=150.43 Aligned_cols=191 Identities=18% Similarity=0.149 Sum_probs=146.9
Q ss_pred cCCccEEEccCCccc-ccCC-c--CCCCCceEEEccCCCCcccChhhhcCC-----CCccEEEecC-CcCCCCCcCccCC
Q 002024 362 FEDLTGISLMSNYIH-EVPA-M--LECPKLQVLLLQENSPLVIPDKFFQGM-----KDLKVLDLSY-ILPLSLPPSLSFL 431 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~-~~~~-~--~~~~~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~L~~-~~~~~~p~~~~~l 431 (979)
++++++|++++|.+. .+|. + ..+++|+.|++++|.+..+| ..|..+ ++|++|+|++ .+....|..|..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 568999999999988 5664 2 57999999999999999884 556666 8999999999 5654444889999
Q ss_pred cCCCEEEeCCCCCCCC----ccc--cCCcCCcEEEcccCcCcccc----hhhccCccccEEecCCCCCccccCcchhccC
Q 002024 432 VDLRTLRLEDCYLGDL----SVI--GELSNLEILSLCRSSIKEIP----ETFCRLSHLWLLDLDHCRQLALIPHGVISQL 501 (979)
Q Consensus 432 ~~L~~L~L~~~~l~~l----~~i--~~L~~L~~L~Ls~~~l~~lp----~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L 501 (979)
++|++|+|++|++... +.+ +.+++|++|++++|.+..++ ..+.++++|++|++++|......|...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 9999999999986532 233 88999999999999998554 2346789999999999764443433336778
Q ss_pred cCCcEEEcccCccccccccccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEE
Q 002024 502 DKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIA 561 (979)
Q Consensus 502 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~ 561 (979)
++|++|++++|... ... ..+. ++|+.|+++++..+..|....+++|+.|++.
T Consensus 253 ~~L~~L~Ls~N~l~-~ip-----~~~~--~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~ 304 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-QVP-----KGLP--AKLSVLDLSYNRLDRNPSPDELPQVGNLSLK 304 (312)
T ss_dssp TTCCEEECTTSCCS-SCC-----SSCC--SEEEEEECCSSCCCSCCCTTTSCEEEEEECT
T ss_pred CCCCEEECCCCccC-hhh-----hhcc--CCceEEECCCCCCCCChhHhhCCCCCEEecc
Confidence 99999999998654 111 2233 7899999999998888765666677776654
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=2.4e-13 Score=138.87 Aligned_cols=149 Identities=31% Similarity=0.413 Sum_probs=130.3
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEEEeCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTLRLED 441 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L~L~~ 441 (979)
..+.++.+++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+| ..|..+++|++|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCC
Confidence 3457889999999998644 38999999999999999888899999999999999 555 666 4578999999999999
Q ss_pred CCCCCCc--cccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccc
Q 002024 442 CYLGDLS--VIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKN 515 (979)
Q Consensus 442 ~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~ 515 (979)
|.++.++ .+..+++|++|+|++|.+..+|..+.++++|++|++++| .+..++...+..+++|+.|++++|...
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 9999884 478999999999999999999999999999999999996 477888776889999999999988653
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=2.2e-13 Score=138.06 Aligned_cols=147 Identities=24% Similarity=0.309 Sum_probs=127.5
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYL 444 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l 444 (979)
+.++.+++.++.+|.... ++++.|++++|.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 578889999998886443 7899999999999999998899999999999999 56645588999999999999999999
Q ss_pred CCCc--cccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 445 GDLS--VIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 445 ~~l~--~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
+.++ .+.++++|++|+|++|.+..+ |..|..+++|++|++++|. +..++...+..+++|+.|++++|..
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 9884 378999999999999999987 5679999999999999965 6777776688899999999988754
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=3.6e-13 Score=135.53 Aligned_cols=163 Identities=25% Similarity=0.331 Sum_probs=129.8
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCc-CccCCcCCCEEEeCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP-SLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~-~~~~l~~L~~L~L~~~~ 443 (979)
+.++..++.++.+|... .++++.|++++|.+..+++..|..+++|++|+|++ .+. .+|. .|..+++|++|+|++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCc
Confidence 46677777887777433 46899999999999999888889999999999999 555 5554 56889999999999999
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCcccchh-hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEIPET-FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
++.++ .+.++++|++|++++|.+..+|.. +.++++|++|++++|. +..++...+..+++|+.|++++|...
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee-----
Confidence 88874 378899999999999999888764 7889999999999964 66777766788999999999887432
Q ss_pred ccchhccccccccceecccccCC
Q 002024 521 NAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
+.+++|+.|+++.+..
T Consensus 162 -------~~~~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 162 -------CTCPGIRYLSEWINKH 177 (208)
T ss_dssp -------CCTTTTHHHHHHHHHC
T ss_pred -------cCCCCHHHHHHHHHhC
Confidence 3355677777766543
No 102
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=3.2e-13 Score=140.96 Aligned_cols=146 Identities=21% Similarity=0.189 Sum_probs=86.4
Q ss_pred CCcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEe
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L 439 (979)
..+++++.|++++|.+..++.+..+++|+.|++++|.+..+++ |..+++|++|+|+++....+|... . ++|++|+|
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 3445666666666666666655566666666666666666654 566666666666663222444322 2 66666666
Q ss_pred CCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCc
Q 002024 440 EDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 440 ~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
++|.++.++.+.++++|++|++++|.+..+| .+..+++|++|++++|. +..++. +..+++|+.|++++|.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTGG--LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCTT--STTCCCCCEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchHH--hccCCCCCEEeCCCCc
Confidence 6666666666666666666666666666654 46666666666666643 333322 5566666666665553
No 103
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=146.82 Aligned_cols=192 Identities=17% Similarity=0.058 Sum_probs=142.1
Q ss_pred CCccEEEccCCccccc-CC-c--CCCCCceEEEccCCCCcccCh----hhhcCCCCccEEEecC-CcCCCCCcCccCCcC
Q 002024 363 EDLTGISLMSNYIHEV-PA-M--LECPKLQVLLLQENSPLVIPD----KFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVD 433 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~-~~-~--~~~~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~ 433 (979)
..+++|++++|.+... |. + ..+++|++|++++|.+....+ ..+..+++|++|+|++ .+....|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4588899999988743 32 3 678899999999998885322 3345788999999999 565445578889999
Q ss_pred CCEEEeCCCCCCC---C---ccccCCcCCcEEEcccCcCcccchh----hccCccccEEecCCCCCccccCcchhccC--
Q 002024 434 LRTLRLEDCYLGD---L---SVIGELSNLEILSLCRSSIKEIPET----FCRLSHLWLLDLDHCRQLALIPHGVISQL-- 501 (979)
Q Consensus 434 L~~L~L~~~~l~~---l---~~i~~L~~L~~L~Ls~~~l~~lp~~----i~~L~~L~~L~l~~c~~~~~~p~~~l~~L-- 501 (979)
|++|+|++|++.. + ..++.+++|++|++++|.++.+|.. +.++++|++|++++|......|.. +..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccC
Confidence 9999999998654 2 2246888999999999988877653 578899999999997644434655 5555
Q ss_pred -cCCcEEEcccCccccccccccchhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEc
Q 002024 502 -DKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVR 563 (979)
Q Consensus 502 -~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~ 563 (979)
++|++|++++|... ... ..+ .++|+.|+++++..+.++....+++|+.|++..+
T Consensus 250 ~~~L~~L~Ls~N~l~-~lp-----~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QVP-----KGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp CTTCCCEECCSSCCC-SCC-----SCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred cCcCCEEECCCCCCC-chh-----hhh--cCCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 69999999888654 111 222 2789999999988887777777888888887543
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=8.9e-14 Score=162.17 Aligned_cols=188 Identities=21% Similarity=0.229 Sum_probs=157.7
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
.+..+.+..+.+..+....++++|+.|++++|.+..++. |..+++|++|+|+++....++. +..+++|++|+|++|.
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC
Confidence 344555666666666666788999999999999998874 7899999999999944336665 9999999999999999
Q ss_pred CCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccc
Q 002024 444 LGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAK 523 (979)
Q Consensus 444 l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~ 523 (979)
+..++.+..+++|++|+|++|.+..++ .+..|++|+.|++++|. +..++. +..+++|+.|++++|....
T Consensus 99 l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~------- 167 (605)
T 1m9s_A 99 IKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISD------- 167 (605)
T ss_dssp CCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCC-------
T ss_pred CCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCC-------
Confidence 999999999999999999999999875 58999999999999975 566643 8999999999999986531
Q ss_pred hhccccccccceecccccCCcCCCCCCCCCCCCeEEEEEccc
Q 002024 524 VVELQALTRLTNLMFHFPQNSILPSHMPFQHLPNFTIAVRVS 565 (979)
Q Consensus 524 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~ 565 (979)
+..+..+++|+.|+++.+.+..++....+++|+.|.+..+..
T Consensus 168 ~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 168 IVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp CGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred chhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence 122888999999999999988887778899999999876543
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=6.4e-14 Score=153.10 Aligned_cols=145 Identities=16% Similarity=0.139 Sum_probs=80.8
Q ss_pred eEEEccCCCCcccChhhhcCC--CCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCC--C-ccccCCcCCcEEEc
Q 002024 388 QVLLLQENSPLVIPDKFFQGM--KDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGD--L-SVIGELSNLEILSL 461 (979)
Q Consensus 388 ~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~--l-~~i~~L~~L~~L~L 461 (979)
+.++++++.+. +..+..+ +++++|++++ .+. ..+..+..+++|++|++++|.++. + ..+.++++|++|++
T Consensus 50 ~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 50 QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMD-QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEEC-SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred eeeccccccCC---HHHHHhhhhccceEEEcCCcccc-ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 34444444333 2334444 5666666666 333 333345566777777777776543 2 34566777777777
Q ss_pred ccCcCc-ccchhhccCccccEEecCCCCCccc--cCcchhccCcCCcEEEcccC-ccccccccccchhcccccc-cccee
Q 002024 462 CRSSIK-EIPETFCRLSHLWLLDLDHCRQLAL--IPHGVISQLDKLEEFYMWNT-FKNWDCETNAKVVELQALT-RLTNL 536 (979)
Q Consensus 462 s~~~l~-~lp~~i~~L~~L~~L~l~~c~~~~~--~p~~~l~~L~~L~~L~l~~~-~~~~~~~~~~~~~~l~~l~-~L~~L 536 (979)
++|.+. ..|..++++++|++|++++|..+.. ++.. +..+++|++|++++| .... ......+..++ +|+.|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~----~~~~~~~~~l~~~L~~L 200 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE----KHVQVAVAHVSETITQL 200 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH----HHHHHHHHHSCTTCCEE
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh----HHHHHHHHhcccCCCEE
Confidence 777665 4556667777777777777644442 3332 566777777777666 3210 00122344555 56666
Q ss_pred ccccc
Q 002024 537 MFHFP 541 (979)
Q Consensus 537 ~l~~~ 541 (979)
+++++
T Consensus 201 ~l~~~ 205 (336)
T 2ast_B 201 NLSGY 205 (336)
T ss_dssp ECCSC
T ss_pred EeCCC
Confidence 55544
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=1.1e-13 Score=144.58 Aligned_cols=169 Identities=19% Similarity=0.156 Sum_probs=136.4
Q ss_pred CcCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeC
Q 002024 361 TFEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLE 440 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~ 440 (979)
.++.+..+++.++.++.++.+.++++|+.|++++|.+..++ .+..+++|++|+|+++....+|. +..+++|++|+|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 44556677788888888877778999999999999998887 37889999999999943336666 8899999999999
Q ss_pred CCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccc
Q 002024 441 DCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCET 520 (979)
Q Consensus 441 ~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~ 520 (979)
+|+++.++.+.. ++|++|++++|.+..++ .+.++++|++|++++|. +..++. +..+++|+.|++++|....
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~---- 164 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITN---- 164 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCB----
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcc----
Confidence 999988876666 99999999999998886 58899999999999965 666763 8889999999998886531
Q ss_pred ccchhccccccccceecccccCCc
Q 002024 521 NAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 521 ~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
+..+..+++|+.|+++++...
T Consensus 165 ---~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 ---TGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ---CTTSTTCCCCCEEEEEEEEEE
T ss_pred ---hHHhccCCCCCEEeCCCCccc
Confidence 155677778888888776543
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=3.2e-13 Score=134.47 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=126.0
Q ss_pred CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCC--CccccCCcCCcEE
Q 002024 382 LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGD--LSVIGELSNLEIL 459 (979)
Q Consensus 382 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~--l~~i~~L~~L~~L 459 (979)
.++++|+.|++++|.+..++ . +..+++|++|+++++.. ..++.+..+++|++|++++|.++. ...++.+++|++|
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCC-SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCC-CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 46789999999999999887 3 78899999999999644 445588999999999999999876 4788999999999
Q ss_pred EcccCcCcc-cchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecc
Q 002024 460 SLCRSSIKE-IPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMF 538 (979)
Q Consensus 460 ~Ls~~~l~~-lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 538 (979)
++++|.+.. .|..++++++|++|++++|..+..+|. +..+++|++|++++|... .+..+..+++|+.|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~-------~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVH-------DYRGIEDFPKLNQLYA 188 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCC-------CCTTGGGCSSCCEEEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCc-------ChHHhccCCCCCEEEe
Confidence 999999985 678899999999999999876788874 899999999999988653 1236778889999999
Q ss_pred cccCC
Q 002024 539 HFPQN 543 (979)
Q Consensus 539 ~~~~~ 543 (979)
+++.+
T Consensus 189 ~~N~i 193 (197)
T 4ezg_A 189 FSQTI 193 (197)
T ss_dssp CBC--
T ss_pred eCccc
Confidence 88764
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=6.3e-13 Score=134.69 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=122.1
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCccc-ChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVI-PDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
+.+++++|.++.+|... .+.++.|++++|.+..+ +..+|..+++|++|+|++ .+....+..|..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 47899999999888543 45678999999999988 456788999999999999 5553344588999999999999999
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccc
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKN 515 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~ 515 (979)
++.++ .+.++++|++|+|++|.+..+ |..+..+++|++|++++|. +..+++..+..+++|+.|++++|...
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 98883 488999999999999999877 5778999999999999965 66665445889999999999887543
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=8.4e-14 Score=152.15 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=126.0
Q ss_pred CCccEEEccCCcccccC-CcCCCCCceEEEccCCCCccc-ChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEe
Q 002024 363 EDLTGISLMSNYIHEVP-AMLECPKLQVLLLQENSPLVI-PDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRL 439 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L 439 (979)
+.++.+++.+|.+...+ ....+++|+.|++++|.+... .+..+..+++|++|+|++ .+....|..+..+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 46778888888777543 555788888888888887643 455678888888888888 444456667778888888888
Q ss_pred CCC-CCCC--Cc-cccCCcCCcEEEcccC-cCcc--cchhhccCc-cccEEecCCCC-Cc--cccCcchhccCcCCcEEE
Q 002024 440 EDC-YLGD--LS-VIGELSNLEILSLCRS-SIKE--IPETFCRLS-HLWLLDLDHCR-QL--ALIPHGVISQLDKLEEFY 508 (979)
Q Consensus 440 ~~~-~l~~--l~-~i~~L~~L~~L~Ls~~-~l~~--lp~~i~~L~-~L~~L~l~~c~-~~--~~~p~~~l~~L~~L~~L~ 508 (979)
++| .++. ++ .+.++++|++|++++| .+.. ++..+.+++ +|++|++++|. .+ ..++.. +..+++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 888 5664 33 4677888888888888 7774 677788888 88888888874 23 234443 67788888888
Q ss_pred cccCccccccccccchhccccccccceecccccC
Q 002024 509 MWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 509 l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
+++|.... ...+..+.++++|+.|+++++.
T Consensus 229 l~~~~~l~----~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVMLK----NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTCC----GGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcCC----HHHHHHHhCCCCCCEeeCCCCC
Confidence 88876321 2334566777888888887664
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.42 E-value=3.3e-13 Score=145.21 Aligned_cols=180 Identities=10% Similarity=0.021 Sum_probs=96.3
Q ss_pred ccEEEccCCccc-----ccCCcCCCCCceEEEccCCCCcccChhhh--cCCCCccEEEecC-CcCCCCC----cCccCCc
Q 002024 365 LTGISLMSNYIH-----EVPAMLECPKLQVLLLQENSPLVIPDKFF--QGMKDLKVLDLSY-ILPLSLP----PSLSFLV 432 (979)
Q Consensus 365 l~~l~l~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~l~~L~~L~L~~-~~~~~~p----~~~~~l~ 432 (979)
++.+.+.++.+. .+.....+++|+.|++++|.+....+..+ ..+++|++|+|++ .+....+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 455555555543 12222344557777777777665444434 6667777777776 3332222 2234566
Q ss_pred CCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcc---cch--hhccCccccEEecCCCCCccccCcc---hhccCc
Q 002024 433 DLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKE---IPE--TFCRLSHLWLLDLDHCRQLALIPHG---VISQLD 502 (979)
Q Consensus 433 ~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~---lp~--~i~~L~~L~~L~l~~c~~~~~~p~~---~l~~L~ 502 (979)
+|++|+|++|.+..+ ..++.+++|++|+|++|.+.. ++. .+.++++|++|++++|. +..++.. .+..++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCC
Confidence 777777777766555 346667777777777776542 322 23566677777777654 3333321 235566
Q ss_pred CCcEEEcccCccccccccccchhccccccccceecccccCCcCCC
Q 002024 503 KLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILP 547 (979)
Q Consensus 503 ~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 547 (979)
+|++|++++|......+ ..+..+..+++|+.|+++++..+.+|
T Consensus 225 ~L~~L~Ls~N~l~~~~p--~~~~~~~~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVN--PSAPRCMWSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp CCSSEECTTSCCCCCCC--SCCSSCCCCTTCCCEECCSSCCCSCC
T ss_pred CCCEEECCCCCCCccch--hhHHhccCcCcCCEEECCCCCCCchh
Confidence 67777776665421110 11122222356666666665554333
No 111
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=3.5e-11 Score=133.91 Aligned_cols=287 Identities=16% Similarity=0.072 Sum_probs=169.6
Q ss_pred CCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcc----C--CCeEEEEEeccCC-CHHH
Q 002024 9 KGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESK----R--YDTVVMAVVSHNL-SIVK 77 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~--f~~~~~~~~~~~~-~~~~ 77 (979)
+..|+||+++++++.+.+. ....+.+.|+|++|+|||++|+.+++...... . ...++|+++.... +...
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 98 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQA 98 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHH
Confidence 4789999999999987764 34457899999999999999999999864321 1 3457888888777 8888
Q ss_pred HHHHHHHHh-CCccc--ccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc---hhhhcCCCCCCCCCcEEEEEcCChhhh
Q 002024 78 IQGEIAAVL-GLTIC--GIEESARAGYLWERIKMEKRILVILDDVWERID---LQKVGIPLGEDHEGCNILLTSRSQGVC 151 (979)
Q Consensus 78 ~~~~i~~~l-~~~~~--~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~---~~~l~~~~~~~~~~~~iiiTtr~~~~~ 151 (979)
+...+++++ +.... +.........+.+.+...+. +|||||++.... .+.+...+.....+..+|+||+.....
T Consensus 99 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~ 177 (384)
T 2qby_B 99 VLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVR 177 (384)
T ss_dssp HHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTT
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchH
Confidence 999998887 33221 22223445556666653344 999999976422 111011111111677888888865321
Q ss_pred hcc------CCcceEEcCCCCHHHHHHHHHHHhCC-CCCCccchHHHHHHHHHcC---CCch-HHHHHHHHH--h-c--C
Q 002024 152 NQM------DAQKIFIVRTLLEEESWILFREAAGT-VVENSDLNSIAREVAAKCS---GLPI-AILTVGRAL--K-N--R 215 (979)
Q Consensus 152 ~~~------~~~~~~~l~~L~~~e~~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~---g~Pl-al~~~~~~l--~-~--~ 215 (979)
..+ +....+.+++++.++..+++..++.. .....-.++....+++.++ |.|. ++..+.... . + .
T Consensus 178 ~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 178 DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 111 11238999999999999999987631 1112223456778888887 8877 444433322 1 1 1
Q ss_pred CChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHccCCCCccccHHHHHHhheeeeeeccccc
Q 002024 216 NNKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCCLFPEDYNIKIEVLMRYGMGLRWFKDVET 295 (979)
Q Consensus 216 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp~~~~~~~~~l~~~w~~~g~~~~~~~ 295 (979)
-..+.+..++++.. ...+..+++.+++. .+..+..++....+..+. +......-..| ...
T Consensus 258 i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~~--- 317 (384)
T 2qby_B 258 IRKEHVDKAIVDYE--------------QERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-QKP--- 317 (384)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CCC---
T ss_pred cCHHHHHHHHHHHh--------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-CCC---
Confidence 12355555554432 12355666778754 555555455411101111 11111111111 000
Q ss_pred HHHHHHHHHHHHHHhhhceeEEe
Q 002024 296 LEEARVRTHAIVSTLISSFLLIA 318 (979)
Q Consensus 296 ~~~~~~~~~~~l~~L~~~~l~~~ 318 (979)
.....+..++..|..+++++.
T Consensus 318 --~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 318 --LSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp --CCHHHHHHHHHHHHHTTSEEE
T ss_pred --CCHHHHHHHHHHHHhCCCEEE
Confidence 012455677899999999876
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.40 E-value=1.5e-12 Score=143.07 Aligned_cols=170 Identities=23% Similarity=0.245 Sum_probs=125.9
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhc-CCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQ-GMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
+.++++++.++.+|... .+.++.|+|++|.+..+++..|. .+++|++|+|++ .+....+..|..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 57888888888887533 35688899999988888888777 888999999988 5553334568888899999999988
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchh---ccCcCCcEEEcccCccccc
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVI---SQLDKLEEFYMWNTFKNWD 517 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l---~~L~~L~~L~l~~~~~~~~ 517 (979)
++.++ .+.++++|++|+|++|.+..+ |..|.++++|++|++++| .+..+|...+ ..+++|+.|++++|....
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 177 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK- 177 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC-
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc-
Confidence 87773 478888999999999888877 567888889999999885 4677777644 568888888888875531
Q ss_pred cccccchhccccccc--cceecccccC
Q 002024 518 CETNAKVVELQALTR--LTNLMFHFPQ 542 (979)
Q Consensus 518 ~~~~~~~~~l~~l~~--L~~L~l~~~~ 542 (979)
.....+..++. |+.|+++++.
T Consensus 178 ----l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 178 ----LPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----CCHHHHHHSCHHHHTTEECCSSC
T ss_pred ----cCHHHhhhccHhhcceEEecCCC
Confidence 12234555554 3666666554
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.39 E-value=3.5e-12 Score=139.70 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=106.2
Q ss_pred CccccCCCCCcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCc-ccChhhhcCCCCccEE-EecC-CcCCCCCc
Q 002024 352 GLLEWPIRDTFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPL-VIPDKFFQGMKDLKVL-DLSY-ILPLSLPP 426 (979)
Q Consensus 352 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L-~L~~-~~~~~~p~ 426 (979)
.+.++|. ...+++++|++++|.++.+|. +.++++|+.|+|++|.+. .++.+.|..+++|+.+ .+.+ .+....|.
T Consensus 20 ~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~ 98 (350)
T 4ay9_X 20 KVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE 98 (350)
T ss_dssp TCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred CCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence 3445443 234678999999999999984 568999999999999975 4777788888887764 4444 55533467
Q ss_pred CccCCcCCCEEEeCCCCCCCCcc--ccCCc--------------------------CCcEEEcccCcCcccchhhccCcc
Q 002024 427 SLSFLVDLRTLRLEDCYLGDLSV--IGELS--------------------------NLEILSLCRSSIKEIPETFCRLSH 478 (979)
Q Consensus 427 ~~~~l~~L~~L~L~~~~l~~l~~--i~~L~--------------------------~L~~L~Ls~~~l~~lp~~i~~L~~ 478 (979)
.|..+++|++|++++|+++.++. +.... .|++|++++|.++.+|..+....+
T Consensus 99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ 178 (350)
T ss_dssp SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence 78899999999999887765522 22222 355555555555555555445555
Q ss_pred ccEEecCCCCCccccCcchhccCcCCcEEEcccCc
Q 002024 479 LWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 479 L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
|++|++.++..+..+|.+++..+++|+.|++++|.
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTR 213 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence 55555555555555555545555556666655553
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=2.3e-12 Score=141.68 Aligned_cols=160 Identities=25% Similarity=0.290 Sum_probs=133.8
Q ss_pred ccccCCCCCcCCccEEEccCCcccccCC--cC-CCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cC
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVPA--ML-ECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PS 427 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~--~~-~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~ 427 (979)
+..++. .....++.|++++|.++.++. +. .+++|+.|+|++|.+..+++..|..+++|++|+|++ .+. .++ ..
T Consensus 30 l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~ 107 (361)
T 2xot_A 30 LPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFL 107 (361)
T ss_dssp CSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTT
T ss_pred cCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHH
Confidence 444443 334568999999999998874 33 899999999999999999998899999999999999 555 544 56
Q ss_pred ccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccchhh----ccCccccEEecCCCCCccccCcchhccC
Q 002024 428 LSFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPETF----CRLSHLWLLDLDHCRQLALIPHGVISQL 501 (979)
Q Consensus 428 ~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~~i----~~L~~L~~L~l~~c~~~~~~p~~~l~~L 501 (979)
|..+++|++|+|++|.++.+ ..+.++++|++|+|++|.+..+|..+ .++++|++|++++|. +..+|...+..+
T Consensus 108 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 186 (361)
T 2xot_A 108 FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKL 186 (361)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHS
T ss_pred hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhc
Confidence 89999999999999999887 46899999999999999999998765 679999999999964 778887667888
Q ss_pred cC--CcEEEcccCccc
Q 002024 502 DK--LEEFYMWNTFKN 515 (979)
Q Consensus 502 ~~--L~~L~l~~~~~~ 515 (979)
+. |+.|++.+|...
T Consensus 187 ~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CHHHHTTEECCSSCEE
T ss_pred cHhhcceEEecCCCcc
Confidence 87 488999987553
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=7.1e-14 Score=155.77 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=94.6
Q ss_pred CCCCceEEEccCCCCcccCh----hhhcCCCCccEEEecCCcCC----CCCcCc-------cCCcCCCEEEeCCCCCCC-
Q 002024 383 ECPKLQVLLLQENSPLVIPD----KFFQGMKDLKVLDLSYILPL----SLPPSL-------SFLVDLRTLRLEDCYLGD- 446 (979)
Q Consensus 383 ~~~~L~~L~L~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~----~~p~~~-------~~l~~L~~L~L~~~~l~~- 446 (979)
.+++|+.|++++|.+..... ..|..+++|++|+|+++... .+|..+ ..+++|++|+|++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 56778888888887764322 23567777888888773221 234333 567778888888877765
Q ss_pred ----C-ccccCCcCCcEEEcccCcCcc-----cchhhccC---------ccccEEecCCCCCc-cccCc--chhccCcCC
Q 002024 447 ----L-SVIGELSNLEILSLCRSSIKE-----IPETFCRL---------SHLWLLDLDHCRQL-ALIPH--GVISQLDKL 504 (979)
Q Consensus 447 ----l-~~i~~L~~L~~L~Ls~~~l~~-----lp~~i~~L---------~~L~~L~l~~c~~~-~~~p~--~~l~~L~~L 504 (979)
+ ..+..+++|++|+|++|.+.. ++..+..+ ++|++|++++|... ..++. ..+..+++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 2 356677778888887777652 23334444 77778877776532 22331 125567777
Q ss_pred cEEEcccCccccccccccchh-ccccccccceecccccC
Q 002024 505 EEFYMWNTFKNWDCETNAKVV-ELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 505 ~~L~l~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 542 (979)
++|++++|....... ...+. .+..+++|+.|+++++.
T Consensus 190 ~~L~L~~n~l~~~g~-~~l~~~~l~~~~~L~~L~Ls~n~ 227 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGI-EHLLLEGLAYCQELKVLDLQDNT 227 (386)
T ss_dssp CEEECCSSCCCHHHH-HHHHHTTGGGCTTCCEEECCSSC
T ss_pred CEEECcCCCCCHhHH-HHHHHHHhhcCCCccEEECcCCC
Confidence 777777764321000 01122 45566666666666554
No 116
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.36 E-value=4.3e-11 Score=133.42 Aligned_cols=289 Identities=15% Similarity=0.099 Sum_probs=173.6
Q ss_pred CCCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhcc---C-CCeEEEEEeccCCCHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESK---R-YDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~---~-f~~~~~~~~~~~~~~~~~~ 79 (979)
.+..|+||+++++++.+++. ....+.+.|+|++|+|||++|+.+++...... . -..++|+++....+...+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 45789999999999999884 24457889999999999999999998774321 1 2346788888888999999
Q ss_pred HHHHHHhCCcccccc--hHHHHHHHHHHHh-cCCeEEEEEcCCCCccc----hhhh---cCCCCCC--CCCcEEEEEcCC
Q 002024 80 GEIAAVLGLTICGIE--ESARAGYLWERIK-MEKRILVILDDVWERID----LQKV---GIPLGED--HEGCNILLTSRS 147 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~--~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~~----~~~l---~~~~~~~--~~~~~iiiTtr~ 147 (979)
..++.+++....... .......+.+.+. .+++.+||+||++.... .+.+ ....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 999999976543222 2333455555554 35689999999986532 1222 1111111 345577777776
Q ss_pred hhhh--------hccCCcceEEcCCCCHHHHHHHHHHHhCC-CCCCccchHHHHHHHHHcC---CCchHHH-HHHHHH--
Q 002024 148 QGVC--------NQMDAQKIFIVRTLLEEESWILFREAAGT-VVENSDLNSIAREVAAKCS---GLPIAIL-TVGRAL-- 212 (979)
Q Consensus 148 ~~~~--------~~~~~~~~~~l~~L~~~e~~~l~~~~~~~-~~~~~~~~~~~~~i~~~~~---g~Plal~-~~~~~l-- 212 (979)
.... .++ ....+.+++++.++..+++...+.. .....-..+....+++.++ |.|..+. .+....
T Consensus 177 ~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~ 255 (387)
T 2v1u_A 177 LGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEI 255 (387)
T ss_dssp STTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 5321 111 1257899999999999999877531 0111222345778888888 9995433 322221
Q ss_pred -h--cCC--ChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHc-cCCCCccccHHHHHHhhe-
Q 002024 213 -K--NRN--NKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCC-LFPEDYNIKIEVLMRYGM- 285 (979)
Q Consensus 213 -~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~-~fp~~~~~~~~~l~~~w~- 285 (979)
. +.. ..+.+..++.+.. ...+.-++..++.+ .+..+...+ ++.+...+....+.+...
T Consensus 256 a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 256 AERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 111 2244444444321 12345567778765 444444333 554333555554443321
Q ss_pred ---eeeeecccccHHHHHHHHHHHHHHhhhceeEEe
Q 002024 286 ---GLRWFKDVETLEEARVRTHAIVSTLISSFLLIA 318 (979)
Q Consensus 286 ---~~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 318 (979)
..| .... ....+..+++.|...|+++.
T Consensus 321 ~~~~~~-~~~~-----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 321 LTSTLG-LEHV-----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHTT-CCCC-----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhcC-CCCC-----CHHHHHHHHHHHHhCCCeEE
Confidence 111 0110 12455667899999999876
No 117
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=6.7e-12 Score=127.08 Aligned_cols=130 Identities=22% Similarity=0.196 Sum_probs=114.4
Q ss_pred CcCCccEEEccCCcccccCC---cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCE
Q 002024 361 TFEDLTGISLMSNYIHEVPA---MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRT 436 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~ 436 (979)
....+++|++++|.++.++. +..+++|+.|++++|.+..+++..|..+++|++|+|++ .+....+..|..+++|++
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 34567899999999998843 56899999999999999999998899999999999999 555333456899999999
Q ss_pred EEeCCCCCCCC--ccccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCc
Q 002024 437 LRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQL 490 (979)
Q Consensus 437 L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~ 490 (979)
|+|++|.++.+ ..+..+++|++|+|++|.+..+ |..|..+++|++|++++|...
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999999888 5689999999999999999988 778999999999999997643
No 118
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.34 E-value=1.3e-11 Score=124.16 Aligned_cols=146 Identities=26% Similarity=0.343 Sum_probs=124.3
Q ss_pred CcCCccEEEccCCcccccCC--cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCE
Q 002024 361 TFEDLTGISLMSNYIHEVPA--MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRT 436 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~ 436 (979)
..+++++|++++|.+..++. +..+++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+| ..+..+++|++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCE
Confidence 35689999999999998875 45899999999999999999999899999999999999 555 555 45789999999
Q ss_pred EEeCCCCCCCCc--cccCCcCCcEEEcccCcCcccchh-hccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCc
Q 002024 437 LRLEDCYLGDLS--VIGELSNLEILSLCRSSIKEIPET-FCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTF 513 (979)
Q Consensus 437 L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~ 513 (979)
|++++|.++.++ .+.++++|++|++++|.+..+|.. +.++++|++|++++|.. .+.+++|+.|+++++.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWINK 176 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHHh
Confidence 999999998884 378999999999999999988764 78999999999999743 2455677878777664
Q ss_pred cc
Q 002024 514 KN 515 (979)
Q Consensus 514 ~~ 515 (979)
..
T Consensus 177 ~~ 178 (208)
T 2o6s_A 177 HS 178 (208)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 119
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.34 E-value=4.7e-13 Score=149.10 Aligned_cols=182 Identities=16% Similarity=0.109 Sum_probs=134.7
Q ss_pred CcCCccEEEccCCccccc-----C-CcCCCCCceEEEccCCCCccc----Chhh------hcCCCCccEEEecC-CcCC-
Q 002024 361 TFEDLTGISLMSNYIHEV-----P-AMLECPKLQVLLLQENSPLVI----PDKF------FQGMKDLKVLDLSY-ILPL- 422 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~-----~-~~~~~~~L~~L~L~~~~~~~~----~~~~------~~~l~~L~~L~L~~-~~~~- 422 (979)
..+++++|++++|.+... + .+..+++|+.|+|++|.+..+ |..+ |..+++|++|+|++ .+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 356799999999988743 2 245799999999999866533 3332 47899999999999 5553
Q ss_pred ---CCCcCccCCcCCCEEEeCCCCCCCC------ccccCC---------cCCcEEEcccCcCc--ccc---hhhccCccc
Q 002024 423 ---SLPPSLSFLVDLRTLRLEDCYLGDL------SVIGEL---------SNLEILSLCRSSIK--EIP---ETFCRLSHL 479 (979)
Q Consensus 423 ---~~p~~~~~l~~L~~L~L~~~~l~~l------~~i~~L---------~~L~~L~Ls~~~l~--~lp---~~i~~L~~L 479 (979)
.+|..+..+++|++|+|++|.++.. ..+..+ ++|++|++++|.+. .+| ..+.++++|
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 189 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 189 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc
Confidence 2677889999999999999987643 224444 89999999999886 455 578899999
Q ss_pred cEEecCCCCCccc----cCcchhccCcCCcEEEcccCccccccccccchhccccccccceecccccCC
Q 002024 480 WLLDLDHCRQLAL----IPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQN 543 (979)
Q Consensus 480 ~~L~l~~c~~~~~----~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 543 (979)
++|++++|..... +.+..+..+++|++|++++|...... .......+..+++|+.|+++++..
T Consensus 190 ~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g-~~~l~~~l~~~~~L~~L~L~~n~i 256 (386)
T 2ca6_A 190 HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG-SSALAIALKSWPNLRELGLNDCLL 256 (386)
T ss_dssp CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH-HHHHHHHGGGCTTCCEEECTTCCC
T ss_pred CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH-HHHHHHHHccCCCcCEEECCCCCC
Confidence 9999999853211 22212789999999999998652110 012234577888999999987764
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.33 E-value=1.2e-11 Score=125.13 Aligned_cols=135 Identities=30% Similarity=0.373 Sum_probs=116.8
Q ss_pred ccccCCCCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcC-c
Q 002024 353 LLEWPIRDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPS-L 428 (979)
Q Consensus 353 ~~~~~~~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~-~ 428 (979)
+..++. ...++++.|++++|.+..++ .+..+++|+.|+|++|.+..+.+..|..+++|++|+|++ .+. .+|.. |
T Consensus 23 l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f 100 (220)
T 2v9t_B 23 LTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLF 100 (220)
T ss_dssp CSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTT
T ss_pred cCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHc
Confidence 444443 23368999999999999887 456899999999999999999888899999999999999 555 77654 6
Q ss_pred cCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCC
Q 002024 429 SFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQ 489 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~ 489 (979)
..+++|++|+|++|.++.+ ..+..+++|++|+|++|.+..++. .+..+++|++|++++|..
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8999999999999999888 568999999999999999998875 589999999999999763
No 121
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=8.7e-13 Score=145.32 Aligned_cols=174 Identities=14% Similarity=0.099 Sum_probs=107.1
Q ss_pred EEccCCccc-ccCCcCCC-CCceEEEccCCCCcccCh----hhhcCCC-CccEEEecC-CcCCCCCcCccCC-----cCC
Q 002024 368 ISLMSNYIH-EVPAMLEC-PKLQVLLLQENSPLVIPD----KFFQGMK-DLKVLDLSY-ILPLSLPPSLSFL-----VDL 434 (979)
Q Consensus 368 l~l~~~~~~-~~~~~~~~-~~L~~L~L~~~~~~~~~~----~~~~~l~-~L~~L~L~~-~~~~~~p~~~~~l-----~~L 434 (979)
+.+++|.+. .+|.+... ++|+.|++++|.+...+. ..|..++ +|++|+|++ .+....+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 456666666 34444443 448888888888887776 6677777 788888888 4443445555554 788
Q ss_pred CEEEeCCCCCCCCc------cccCC-cCCcEEEcccCcCcccch-h----hcc-CccccEEecCCCCCcc----ccCcch
Q 002024 435 RTLRLEDCYLGDLS------VIGEL-SNLEILSLCRSSIKEIPE-T----FCR-LSHLWLLDLDHCRQLA----LIPHGV 497 (979)
Q Consensus 435 ~~L~L~~~~l~~l~------~i~~L-~~L~~L~Ls~~~l~~lp~-~----i~~-L~~L~~L~l~~c~~~~----~~p~~~ 497 (979)
++|+|++|.++... .+..+ ++|++|++++|.+...+. . +.. .++|++|++++|.... .++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~- 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI- 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence 88888888776541 24445 788888888888775542 2 333 2588888888865322 22222
Q ss_pred hccCc-CCcEEEcccCccccccccccchhccccc-cccceecccccCC
Q 002024 498 ISQLD-KLEEFYMWNTFKNWDCETNAKVVELQAL-TRLTNLMFHFPQN 543 (979)
Q Consensus 498 l~~L~-~L~~L~l~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~ 543 (979)
+..++ +|++|++++|....... ......+..+ ++|+.|+++++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNC-AELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HhcCCccccEeeecCCCCchhhH-HHHHHHHHhCCCCCCEEECCCCCC
Confidence 34454 78888888775431111 1111233444 4777777776654
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=1.3e-11 Score=142.21 Aligned_cols=177 Identities=18% Similarity=0.253 Sum_probs=115.9
Q ss_pred CccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCC
Q 002024 364 DLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDC 442 (979)
Q Consensus 364 ~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~ 442 (979)
+++.|++++|.++.+|... +++|+.|++++|.+..+| ..+++|++|+|++ .+. .+|. +.. +|++|+|++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~-~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLS-TLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCC-Ccch-hhc--CCCEEECCCC
Confidence 5677778877777777533 367888888888777776 2367788888887 444 5666 544 7888888888
Q ss_pred CCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcccccccccc
Q 002024 443 YLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNA 522 (979)
Q Consensus 443 ~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~ 522 (979)
.++.++. .+++|++|++++|.++.+|. .+++|++|++++|. +..+|. +. ++|+.|++++|... ..+.
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~-- 197 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLPE--LP--ESLEALDVSTNLLE-SLPA-- 197 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC--CC--TTCCEEECCSSCCS-SCCC--
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcch--hh--CCCCEEECcCCCCC-chhh--
Confidence 7777765 67778888888887777776 56778888887764 555666 44 77888888777543 1110
Q ss_pred chhcc-ccccccceecccccCCcCCCCC-CCCCCCCeEEEEE
Q 002024 523 KVVEL-QALTRLTNLMFHFPQNSILPSH-MPFQHLPNFTIAV 562 (979)
Q Consensus 523 ~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~i~~ 562 (979)
....+ ...+.|+.|+++++.++.+|.. ..+++|+.|++..
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~ 239 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239 (571)
T ss_dssp CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCS
T ss_pred HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeC
Confidence 00000 1112237778877777766664 4577777777654
No 123
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.32 E-value=1.7e-11 Score=125.04 Aligned_cols=129 Identities=29% Similarity=0.278 Sum_probs=114.6
Q ss_pred CcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCE
Q 002024 361 TFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRT 436 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~ 436 (979)
...++++|++++|.+..++ .+..+++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+| ..|..+++|++
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~ 116 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKE 116 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCe
Confidence 4478999999999999875 356899999999999999999999999999999999999 555 555 45789999999
Q ss_pred EEeCCCCCCCC-ccccCCcCCcEEEcccCcCcccch-hhccCccccEEecCCCCCc
Q 002024 437 LRLEDCYLGDL-SVIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDHCRQL 490 (979)
Q Consensus 437 L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~c~~~ 490 (979)
|+|++|.++.+ ..+..+++|++|+|++|.+..+|. .+..+++|++|++.+|...
T Consensus 117 L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 117 LFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999999988 578999999999999999999874 6899999999999997643
No 124
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.32 E-value=1.6e-10 Score=128.85 Aligned_cols=291 Identities=15% Similarity=0.083 Sum_probs=173.4
Q ss_pred CCCCchhHHHHHHHHHHHhcC----CCce--EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALNN----ENVS--VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~----~~~~--~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 81 (979)
.+..++||+++++++.+.+.. .... .+.|+|++|+|||++++.+++...... -..++++++....+...+...
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHH
Confidence 347899999999999988863 3334 899999999999999999998876321 235778888888888899999
Q ss_pred HHHHhCCcccc--cchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc--chhhhcCCCCC-CC---CCcEEEEEcCChhhhh
Q 002024 82 IAAVLGLTICG--IEESARAGYLWERIK-MEKRILVILDDVWERI--DLQKVGIPLGE-DH---EGCNILLTSRSQGVCN 152 (979)
Q Consensus 82 i~~~l~~~~~~--~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~--~~~~l~~~~~~-~~---~~~~iiiTtr~~~~~~ 152 (979)
++..++..... .........+.+.+. .+++.+||+|+++... ....+...+.. .. .+..+|++|+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99998764332 222333344444443 3568999999997752 23333222211 11 4667888877654332
Q ss_pred ccC-------CcceEEcCCCCHHHHHHHHHHHhCCC-CCCccchHHHHHHHHHc---------CCCchHHHHHHHHHh--
Q 002024 153 QMD-------AQKIFIVRTLLEEESWILFREAAGTV-VENSDLNSIAREVAAKC---------SGLPIAILTVGRALK-- 213 (979)
Q Consensus 153 ~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~-- 213 (979)
.+. ....+.+++++.++..+++...+... ....-..+....+++.+ +|.|..+..+.....
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~ 253 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 253 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHH
Confidence 221 12479999999999999998776321 11223346788899999 788765554433221
Q ss_pred ----cCCChhHHHHHHHHHhhcCCCccCCchhhhhhhhhhhhccCChhhHHHHHHHHccCC---CCccccHHHHHHhhee
Q 002024 214 ----NRNNKYVWIDAAQQLKKSTPTNIEGMHKDVISSLELSYNYLESEEAKKLFLFCCLFP---EDYNIKIEVLMRYGMG 286 (979)
Q Consensus 214 ----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~~~~~fp---~~~~~~~~~l~~~w~~ 286 (979)
+... -.++++...+.... ...+.-.+..++.+ .+.++..++.+. .+..+....+...+..
T Consensus 254 a~~~~~~~-i~~~~v~~~~~~~~-----------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~ 320 (389)
T 1fnn_A 254 AQQNGRKH-IAPEDVRKSSKEVL-----------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKI 320 (389)
T ss_dssp HHHTTCSS-CCHHHHHHHHHHHS-----------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHH
T ss_pred HHHhCCCC-cCHHHHHHHHHHHh-----------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHH
Confidence 1111 22222222222111 11233345667654 565555554332 2213444444433211
Q ss_pred ----eeeecccccHHHHHHHHHHHHHHhhhceeEEe
Q 002024 287 ----LRWFKDVETLEEARVRTHAIVSTLISSFLLIA 318 (979)
Q Consensus 287 ----~g~~~~~~~~~~~~~~~~~~l~~L~~~~l~~~ 318 (979)
.|. ... ....+..++.+|..++++..
T Consensus 321 ~~~~~~~-~~~-----~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 321 VCEEYGE-RPR-----VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHTTC-CCC-----CHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHcCC-CCC-----CHHHHHHHHHHHHhCCCeEE
Confidence 110 000 12456678899999998876
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=4.9e-12 Score=122.30 Aligned_cols=123 Identities=21% Similarity=0.210 Sum_probs=68.5
Q ss_pred CCccEEEccCCccc--ccCCc-CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEE
Q 002024 363 EDLTGISLMSNYIH--EVPAM-LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 363 ~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~ 438 (979)
+.+++|++++|.+. .+|.. ..+++|+.|++++|.+..+ ..|..+++|++|+|++ .+...+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45666666666665 55543 3556666666666665555 3355566666666666 33322444444556666666
Q ss_pred eCCCCCCCC---ccccCCcCCcEEEcccCcCcccch----hhccCccccEEecCCC
Q 002024 439 LEDCYLGDL---SVIGELSNLEILSLCRSSIKEIPE----TFCRLSHLWLLDLDHC 487 (979)
Q Consensus 439 L~~~~l~~l---~~i~~L~~L~~L~Ls~~~l~~lp~----~i~~L~~L~~L~l~~c 487 (979)
|++|.++.+ ..+..+++|++|++++|.+..+|. .+..+++|++|++++|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 666655554 245555555666665555555544 4555555555555554
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=8.5e-13 Score=145.39 Aligned_cols=182 Identities=14% Similarity=0.139 Sum_probs=132.5
Q ss_pred cCCccEEEccCCcccccCC------cCCCC-CceEEEccCCCCcccChhhhcCC-----CCccEEEecC-CcCCCCCcC-
Q 002024 362 FEDLTGISLMSNYIHEVPA------MLECP-KLQVLLLQENSPLVIPDKFFQGM-----KDLKVLDLSY-ILPLSLPPS- 427 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~~------~~~~~-~L~~L~L~~~~~~~~~~~~~~~l-----~~L~~L~L~~-~~~~~~p~~- 427 (979)
.+++++|++++|.+...+. +..++ +|+.|++++|.+.......|..+ ++|++|+|++ .+....+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3569999999999987763 34677 89999999999998876666665 9999999999 555333443
Q ss_pred ---ccCC-cCCCEEEeCCCCCCCCc------cccCC-cCCcEEEcccCcCc-----ccchhhccCc-cccEEecCCCCCc
Q 002024 428 ---LSFL-VDLRTLRLEDCYLGDLS------VIGEL-SNLEILSLCRSSIK-----EIPETFCRLS-HLWLLDLDHCRQL 490 (979)
Q Consensus 428 ---~~~l-~~L~~L~L~~~~l~~l~------~i~~L-~~L~~L~Ls~~~l~-----~lp~~i~~L~-~L~~L~l~~c~~~ 490 (979)
+..+ ++|++|+|++|.++... .+..+ ++|++|+|++|.+. .++..+..++ +|++|++++|. +
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN-L 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-G
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC-C
Confidence 4445 89999999999987662 24443 69999999999888 5566677776 99999999986 4
Q ss_pred cccCcc----hhccC-cCCcEEEcccCccccccccccchhcccc-ccccceecccccCCcC
Q 002024 491 ALIPHG----VISQL-DKLEEFYMWNTFKNWDCETNAKVVELQA-LTRLTNLMFHFPQNSI 545 (979)
Q Consensus 491 ~~~p~~----~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~ 545 (979)
...+.. .+... ++|++|++++|....... ......+.. .++|+.|+++++....
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-AELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-HHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-HHHHHHHhcCCCCceEEECcCCCCCc
Confidence 444322 13445 699999999987532111 112234444 3589999998877643
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=7.6e-12 Score=118.18 Aligned_cols=121 Identities=23% Similarity=0.321 Sum_probs=56.1
Q ss_pred CceEEEccCCCCc--ccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCC-Cc-cccCCcCCcEEEc
Q 002024 386 KLQVLLLQENSPL--VIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGD-LS-VIGELSNLEILSL 461 (979)
Q Consensus 386 ~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~-l~-~i~~L~~L~~L~L 461 (979)
+++.|++++|.+. .++. .+..+++|++|+++++....+ ..+..+++|++|++++|.++. ++ .++.+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 3444444444443 2222 234444445555444211122 344455555555555555444 32 2333555555555
Q ss_pred ccCcCcccc--hhhccCccccEEecCCCCCccccCc---chhccCcCCcEEEc
Q 002024 462 CRSSIKEIP--ETFCRLSHLWLLDLDHCRQLALIPH---GVISQLDKLEEFYM 509 (979)
Q Consensus 462 s~~~l~~lp--~~i~~L~~L~~L~l~~c~~~~~~p~---~~l~~L~~L~~L~l 509 (979)
++|.+..+| ..+..+++|++|++++|. +..+|. ..+..+++|+.|++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 555555443 445555555555555543 333433 23455555555554
No 128
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.28 E-value=2.5e-11 Score=135.40 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=131.6
Q ss_pred CCCCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC-CCeEEEEEeccCCCHHHHHHHH
Q 002024 8 SKGIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-YDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~i 82 (979)
.+..|+||+++++++.+.+. ....+.+.|+|++|+|||+||+.+++....... ...++|+.+....+...+...+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i 97 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADL 97 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHH
Confidence 45789999999999999886 344578999999999999999999998753321 3357788887777888888888
Q ss_pred HHHhCCccccc--chHHHHHHHHHHHhc-CCeEEEEEcCCCCcc------chhhhcCCCCC-CCCCcEEEEEcCChhhhh
Q 002024 83 AAVLGLTICGI--EESARAGYLWERIKM-EKRILVILDDVWERI------DLQKVGIPLGE-DHEGCNILLTSRSQGVCN 152 (979)
Q Consensus 83 ~~~l~~~~~~~--~~~~~~~~~~~~l~~-~~~~LlvlDd~~~~~------~~~~l~~~~~~-~~~~~~iiiTtr~~~~~~ 152 (979)
+..++...... ........+.+.+.. +++.+||+|+++... .+..+...+.. ...+..+|+||+......
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~ 177 (386)
T 2qby_A 98 LESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVD 177 (386)
T ss_dssp TTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGG
T ss_pred HHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHh
Confidence 88876543221 223334445555543 458999999986532 12222111100 234556777777654322
Q ss_pred ccC-------CcceEEcCCCCHHHHHHHHHHHhCCC-CCCccchHHHHHHHHHcC---CCchHHHH
Q 002024 153 QMD-------AQKIFIVRTLLEEESWILFREAAGTV-VENSDLNSIAREVAAKCS---GLPIAILT 207 (979)
Q Consensus 153 ~~~-------~~~~~~l~~L~~~e~~~l~~~~~~~~-~~~~~~~~~~~~i~~~~~---g~Plal~~ 207 (979)
.+. ....+.+++++.++..+++...+... .......++...+++.++ |.|..+..
T Consensus 178 ~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 178 LLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp GCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred hhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 211 12589999999999999998765311 112223456777888877 99884443
No 129
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.27 E-value=5.3e-11 Score=137.02 Aligned_cols=158 Identities=19% Similarity=0.181 Sum_probs=123.7
Q ss_pred cCCccEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCC
Q 002024 362 FEDLTGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLED 441 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~ 441 (979)
.++++.|++++|.++.+| ..+++|+.|++++|.+..+|. |.. +|++|+|+++....+|. .+++|++|+|++
T Consensus 79 ~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 79 PPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINADN 149 (571)
T ss_dssp CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECCS
T ss_pred cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCCC
Confidence 367899999999999888 457899999999999988876 444 89999999943336776 688999999999
Q ss_pred CCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCC-------cEEEcccCcc
Q 002024 442 CYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKL-------EEFYMWNTFK 514 (979)
Q Consensus 442 ~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L-------~~L~l~~~~~ 514 (979)
|.++.++. .+++|++|+|++|.+..+|. +. ++|++|++++|. +..+|. +.. +| +.|++++|..
T Consensus 150 N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~-L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 150 NQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL-LESLPA--VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC-CSSCCC--CC----------CCEEEECCSSCC
T ss_pred CccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC-CCchhh--HHH--hhhcccccceEEecCCCcc
Confidence 99888766 67899999999999988888 65 899999999864 667776 333 66 9999988865
Q ss_pred ccccccccchhccccccccceecccccCCc
Q 002024 515 NWDCETNAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 515 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
. .....+..+++|+.|+++++...
T Consensus 220 ~------~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 220 T------HIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp C------CCCGGGGGSCTTEEEECCSSSCC
T ss_pred e------ecCHHHhcCCCCCEEEeeCCcCC
Confidence 3 22345666889999999887753
No 130
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=5.9e-12 Score=122.68 Aligned_cols=133 Identities=17% Similarity=0.153 Sum_probs=81.7
Q ss_pred ccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCc-c-ccCCc
Q 002024 377 EVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLS-V-IGELS 454 (979)
Q Consensus 377 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~-~-i~~L~ 454 (979)
..+.+.++++|+.|++++|.+..++ .+....++|++|+|+++....+ ..+..+++|++|+|++|.++.++ . +..++
T Consensus 11 ~~~~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 11 QAAQYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp TSCEEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HHHhcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 3344556677777777777776663 2223233677777777322233 45666777777777777766653 2 36677
Q ss_pred CCcEEEcccCcCcccch--hhccCccccEEecCCCCCccccCcc---hhccCcCCcEEEcccC
Q 002024 455 NLEILSLCRSSIKEIPE--TFCRLSHLWLLDLDHCRQLALIPHG---VISQLDKLEEFYMWNT 512 (979)
Q Consensus 455 ~L~~L~Ls~~~l~~lp~--~i~~L~~L~~L~l~~c~~~~~~p~~---~l~~L~~L~~L~l~~~ 512 (979)
+|++|++++|.+..+|. .+..+++|++|++++|. +..+|.. ++..+++|+.|+++++
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 77777777777766665 66677777777777754 3445542 3566666666666655
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=6.3e-11 Score=120.82 Aligned_cols=188 Identities=11% Similarity=0.080 Sum_probs=120.2
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
.|.....++||++.++++.+++.....+.+.|+|++|+|||++|+.+++.......-...+.+.++...+...+...+..
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (226)
T 2chg_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKE 91 (226)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHH
T ss_pred CCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHH
Confidence 45566789999999999999998765556899999999999999999987643222223445555444443333222221
Q ss_pred HhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCChhhh-h-ccCCcceE
Q 002024 85 VLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQGVC-N-QMDAQKIF 160 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~~~~-~-~~~~~~~~ 160 (979)
...... ...+++.++|+||++... ..+.+...+.....+.++|+||+..... . .......+
T Consensus 92 ~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i 156 (226)
T 2chg_A 92 FARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVF 156 (226)
T ss_dssp HHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCcee
Confidence 111100 012678999999997652 2333332222234567788888765321 1 11223489
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 161 IVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 161 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
++.+++.++..+++.+.+..... .-..+....+++.++|.|..+..+
T Consensus 157 ~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 157 RFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp ECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999887632111 123456788999999999865544
No 132
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.25 E-value=3.3e-11 Score=116.38 Aligned_cols=126 Identities=24% Similarity=0.303 Sum_probs=71.3
Q ss_pred CCCceEEEccCCCCc--ccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCC-Ccc-ccCCcCCcEE
Q 002024 384 CPKLQVLLLQENSPL--VIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGD-LSV-IGELSNLEIL 459 (979)
Q Consensus 384 ~~~L~~L~L~~~~~~--~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~-l~~-i~~L~~L~~L 459 (979)
.++|+.|++++|.+. .++.. +..+++|++|+|+++....+ ..+..+++|++|++++|.++. ++. +.++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 366777777777666 44432 55666666666666222133 555666666666666666555 332 3346666666
Q ss_pred EcccCcCcccc--hhhccCccccEEecCCCCCccccCc---chhccCcCCcEEEcccC
Q 002024 460 SLCRSSIKEIP--ETFCRLSHLWLLDLDHCRQLALIPH---GVISQLDKLEEFYMWNT 512 (979)
Q Consensus 460 ~Ls~~~l~~lp--~~i~~L~~L~~L~l~~c~~~~~~p~---~~l~~L~~L~~L~l~~~ 512 (979)
++++|.+..+| ..+.++++|++|++++|. +..+|. ..+..+++|+.|++++|
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 66666666554 456666666666666643 344443 23555556665555554
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.25 E-value=6e-11 Score=123.02 Aligned_cols=199 Identities=13% Similarity=0.091 Sum_probs=119.0
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
|.....++||+++++.+...+..+. .+.+.|+|++|+|||++|+.+++.......+.. ..+. .... ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~---~~~~---~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCG---VCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS---SCCS---CSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC---CCCc---ccHH-HHHHhc
Confidence 4556789999999999999987543 357889999999999999999987753221100 0000 0000 001100
Q ss_pred Hh-----CCcccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCChhhh-h
Q 002024 85 VL-----GLTICGIEESARAGYLWERIK----MEKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRSQGVC-N 152 (979)
Q Consensus 85 ~l-----~~~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~~~~~-~ 152 (979)
.. ...............+.+.+. .+++.+||+||++.. ..+..+...+.....+..+|+||+..... .
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~ 171 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 171 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCH
Confidence 00 000000011112222222221 356799999999764 23344433332334567788888764322 1
Q ss_pred -ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHH
Q 002024 153 -QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRAL 212 (979)
Q Consensus 153 -~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l 212 (979)
.......+++++++.+|..+++...+.... ..-..+....|++.++|.|..+..+...+
T Consensus 172 ~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 172 TILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112246899999999999999988774322 12234568899999999999988775544
No 134
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.25 E-value=1.6e-11 Score=115.93 Aligned_cols=121 Identities=22% Similarity=0.226 Sum_probs=71.8
Q ss_pred CCccEEEccCCccc--ccCCc-CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEE
Q 002024 363 EDLTGISLMSNYIH--EVPAM-LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLR 438 (979)
Q Consensus 363 ~~l~~l~l~~~~~~--~~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~ 438 (979)
+++++|++++|.+. .+|.. ..+++|+.|++++|.+..+ ..|..+++|++|+|++ .+...+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45666666666665 55543 3566666666666666655 3356666666666666 33322555555566666666
Q ss_pred eCCCCCCCC---ccccCCcCCcEEEcccCcCcccch----hhccCccccEEecC
Q 002024 439 LEDCYLGDL---SVIGELSNLEILSLCRSSIKEIPE----TFCRLSHLWLLDLD 485 (979)
Q Consensus 439 L~~~~l~~l---~~i~~L~~L~~L~Ls~~~l~~lp~----~i~~L~~L~~L~l~ 485 (979)
+++|.++.+ ..++.+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666666554 345666666666666666665553 45666666666654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.24 E-value=1.1e-13 Score=160.57 Aligned_cols=192 Identities=20% Similarity=0.217 Sum_probs=143.3
Q ss_pred CcCCccEEEccCCcccccCC-cCCCCCceEEEccCCC-------------CcccChhhhcCCCCccEEE-ecCCcCCCCC
Q 002024 361 TFEDLTGISLMSNYIHEVPA-MLECPKLQVLLLQENS-------------PLVIPDKFFQGMKDLKVLD-LSYILPLSLP 425 (979)
Q Consensus 361 ~~~~l~~l~l~~~~~~~~~~-~~~~~~L~~L~L~~~~-------------~~~~~~~~~~~l~~L~~L~-L~~~~~~~~p 425 (979)
..+++++|++++|.+..+|+ +..+++|+.|++++|. ....++..+..+++|+.|+ ++++....++
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~ 426 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 426 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhh
Confidence 45678888999999988884 4478888888887664 3445556677788888887 4432100111
Q ss_pred c------CccC--CcCCCEEEeCCCCCCCCccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcch
Q 002024 426 P------SLSF--LVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGV 497 (979)
Q Consensus 426 ~------~~~~--l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~ 497 (979)
. .+.. ...|++|+|++|.++.++.++.+++|++|+|++|.+..+|..++++++|++|++++|. +..+| .
T Consensus 427 ~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~- 503 (567)
T 1dce_A 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G- 503 (567)
T ss_dssp HHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-
T ss_pred hhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-
Confidence 1 1111 1258999999999998988999999999999999999999999999999999999965 66687 4
Q ss_pred hccCcCCcEEEcccCccccccccccchhccccccccceecccccCCcCCCCC-----CCCCCCCeEE
Q 002024 498 ISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH-----MPFQHLPNFT 559 (979)
Q Consensus 498 l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-----~~~~~L~~L~ 559 (979)
++.+++|+.|++++|...... .+..++.+++|+.|+++++.....+.. ..+++|+.|+
T Consensus 504 l~~l~~L~~L~Ls~N~l~~~~----~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 504 VANLPRLQELLLCNNRLQQSA----AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GTTCSSCCEEECCSSCCCSSS----TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred cCCCCCCcEEECCCCCCCCCC----CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 899999999999988653111 146788899999999999888777654 2367777764
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=4.5e-11 Score=118.08 Aligned_cols=123 Identities=23% Similarity=0.276 Sum_probs=84.3
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChh-hhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDK-FFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
+.++++++.++.+|... ..+++.|++++|.+..+++. +|..+++|++|+|++ .+....|..|..+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 56778888887777533 23778888888877777653 467777777777777 4553446677777777777777777
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCC
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQ 489 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~ 489 (979)
++.++ .+.++++|++|+|++|.+..+ |..+..+++|++|++++|..
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 66662 366677777777777776654 55666677777777766543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=1.4e-11 Score=120.09 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=110.8
Q ss_pred CCcCCccEEEccCCcccccCCcCCCC-CceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCc-cCCcCCCEE
Q 002024 360 DTFEDLTGISLMSNYIHEVPAMLECP-KLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSL-SFLVDLRTL 437 (979)
Q Consensus 360 ~~~~~l~~l~l~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~-~~l~~L~~L 437 (979)
....+++.|++++|.++.++.+..+. +|+.|++++|.+..+ ..|..+++|++|+|+++....+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 34568999999999999988777655 999999999999988 35899999999999994333677655 899999999
Q ss_pred EeCCCCCCCCc---cccCCcCCcEEEcccCcCcccchh----hccCccccEEecCCCC
Q 002024 438 RLEDCYLGDLS---VIGELSNLEILSLCRSSIKEIPET----FCRLSHLWLLDLDHCR 488 (979)
Q Consensus 438 ~L~~~~l~~l~---~i~~L~~L~~L~Ls~~~l~~lp~~----i~~L~~L~~L~l~~c~ 488 (979)
+|++|.++.++ .+..+++|++|++++|.+..+|.. +..+++|++|++++|.
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999998875 588999999999999999999875 9999999999999875
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=8.1e-11 Score=116.16 Aligned_cols=118 Identities=26% Similarity=0.299 Sum_probs=54.0
Q ss_pred EEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCC
Q 002024 367 GISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLG 445 (979)
Q Consensus 367 ~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~ 445 (979)
.++++++.++.+|... .++|+.|++++|.+..+| ..|..+++|++|+|++ .+....+..|..+++|++|+|++|.++
T Consensus 14 ~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4555555555555322 245555555555555544 2344455555555555 333122233444444444444444444
Q ss_pred CCc--cccCCcCCcEEEcccCcCcccch-hhccCccccEEecCC
Q 002024 446 DLS--VIGELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLDH 486 (979)
Q Consensus 446 ~l~--~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~~ 486 (979)
.++ .+.++++|++|+|++|.+..+|. .+..+++|++|++++
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence 441 24444444444444444444433 233444444444444
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.19 E-value=1.2e-10 Score=115.06 Aligned_cols=123 Identities=24% Similarity=0.302 Sum_probs=106.9
Q ss_pred eEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcccCc
Q 002024 388 QVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCRSS 465 (979)
Q Consensus 388 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~~ 465 (979)
++++++++.+..+|..+ .++|++|+|+++....+|..|..+++|++|+|++|.++.++ .+.++++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 57899999999998764 36899999999433388999999999999999999998883 58999999999999999
Q ss_pred Ccccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 466 IKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 466 l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
+..+|. .|..+++|++|++++|. +..+|...+..+++|+.|++++|..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCe
Confidence 998864 69999999999999964 7788887788999999999988754
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.18 E-value=1.7e-10 Score=112.39 Aligned_cols=121 Identities=29% Similarity=0.360 Sum_probs=75.1
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEEEeCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L~L~~~~ 443 (979)
+.++++++.++.+|... .++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+| ..+..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCC
Confidence 46667777777666322 36777777777777777766666677777777776 344 444 335666666666666666
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCcccchh-hccCccccEEecCCCC
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIKEIPET-FCRLSHLWLLDLDHCR 488 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~~lp~~-i~~L~~L~~L~l~~c~ 488 (979)
++.++ .+..+++|++|++++|.+..+|.. +.++++|++|++++|.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 66552 245666666666666666655543 3556666666666654
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=2.1e-10 Score=113.27 Aligned_cols=123 Identities=21% Similarity=0.204 Sum_probs=98.1
Q ss_pred eEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCc--CccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcc
Q 002024 388 QVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP--SLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLC 462 (979)
Q Consensus 388 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~--~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls 462 (979)
++++++++.+..+|..++ .+|++|+|++ .+. .++. .|..+++|++|+|++|.++.+ ..+.++++|++|+|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELG-RISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCC-SBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCC-ccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 688999999988887543 3899999999 555 5554 388999999999999998887 468889999999999
Q ss_pred cCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccc
Q 002024 463 RSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKN 515 (979)
Q Consensus 463 ~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~ 515 (979)
+|.+..++. .+.++++|++|++++|. +..+++..+..+++|++|++++|...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999987764 58889999999999965 45554444788889999998887543
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.10 E-value=9.4e-11 Score=140.44 Aligned_cols=150 Identities=21% Similarity=0.176 Sum_probs=88.9
Q ss_pred CCccEEEccCCcccccCC-cCCCCCceEE-----EccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCE
Q 002024 363 EDLTGISLMSNYIHEVPA-MLECPKLQVL-----LLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRT 436 (979)
Q Consensus 363 ~~l~~l~l~~~~~~~~~~-~~~~~~L~~L-----~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~ 436 (979)
..++++.+.++.+...+. .....+|+.+ ++..|.+. +++..|..++.|++|+|+++....+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 456777887777766542 2222233332 23333333 5566688888899999988433388888888888999
Q ss_pred EEeCCCCCCCC-ccccCCcCCcEEEcccCcCcccchhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccc
Q 002024 437 LRLEDCYLGDL-SVIGELSNLEILSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKN 515 (979)
Q Consensus 437 L~L~~~~l~~l-~~i~~L~~L~~L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~ 515 (979)
|+|++|.++.+ ..+++|++|++|+|++|.+..+|..|++|++|++|++++|. +..+|.. ++.|++|++|++++|...
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence 99998888877 45888888999999998888888888888899999998864 6788877 888889999998888653
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=3.3e-10 Score=131.34 Aligned_cols=119 Identities=24% Similarity=0.319 Sum_probs=80.8
Q ss_pred CceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEEEcccC
Q 002024 386 KLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEILSLCRS 464 (979)
Q Consensus 386 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L~Ls~~ 464 (979)
.|+.|++++|.+..+|. |..+++|++|+|++ .+. .+|..++.+++|++|+|++|.++.++.++.+++|++|+|++|
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N 518 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNN 518 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred CceEEEecCCCCCCCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCC
Confidence 46777777777777664 67777777777777 444 677777777777777777777777777777777777777777
Q ss_pred cCccc--chhhccCccccEEecCCCCCccccCcc---hhccCcCCcEEE
Q 002024 465 SIKEI--PETFCRLSHLWLLDLDHCRQLALIPHG---VISQLDKLEEFY 508 (979)
Q Consensus 465 ~l~~l--p~~i~~L~~L~~L~l~~c~~~~~~p~~---~l~~L~~L~~L~ 508 (979)
.+..+ |..++++++|++|++++|. +..+|+. ++..+++|+.|+
T Consensus 519 ~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 519 RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 77766 6777777777777777754 4444332 123356666554
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.08 E-value=8.7e-10 Score=107.36 Aligned_cols=123 Identities=25% Similarity=0.383 Sum_probs=103.5
Q ss_pred ceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCC-cCccCCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcc
Q 002024 387 LQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLP-PSLSFLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLC 462 (979)
Q Consensus 387 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p-~~~~~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls 462 (979)
.+.++++++.+..+|... .++|++|++++ .+. .+| ..+..+++|++|++++|.++.++ .+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 467899999999988654 47899999999 555 555 45789999999999999998884 37899999999999
Q ss_pred cCcCcccch-hhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCcc
Q 002024 463 RSSIKEIPE-TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 463 ~~~l~~lp~-~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
+|.+..+|. .+.++++|++|++++| .+..+|...+..+++|++|++++|..
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCe
Confidence 999998876 4789999999999996 46788877678899999999988854
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=8.1e-12 Score=124.37 Aligned_cols=105 Identities=23% Similarity=0.242 Sum_probs=66.4
Q ss_pred cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCccccCCcCCcEE
Q 002024 381 MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLSVIGELSNLEIL 459 (979)
Q Consensus 381 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~~L~~L 459 (979)
+..+++|+.|++++|.+..++ .+..+++|++|++++ .+. .+|..+..+++|++|++++|.++.++.+..+++|++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L 120 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEE
T ss_pred HhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEE
Confidence 335666666666666666655 356666666666666 333 5666555666666666666666666666666666666
Q ss_pred EcccCcCcccch--hhccCccccEEecCCCC
Q 002024 460 SLCRSSIKEIPE--TFCRLSHLWLLDLDHCR 488 (979)
Q Consensus 460 ~Ls~~~l~~lp~--~i~~L~~L~~L~l~~c~ 488 (979)
++++|.+..+|. .+..+++|++|++++|.
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 666666665543 56666666666666654
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.02 E-value=1.1e-09 Score=118.63 Aligned_cols=191 Identities=14% Similarity=0.085 Sum_probs=117.1
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAV 85 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~ 85 (979)
|.....++||++.++.+.+++..+..+.+.|+|++|+|||++|+.+++..........+++++.+...+...+ +++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 3445789999999999999998765555889999999999999999988642211122445544433332222 222222
Q ss_pred hCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCChhh-hh-ccCCcceEE
Q 002024 86 LGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQGV-CN-QMDAQKIFI 161 (979)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~~~-~~-~~~~~~~~~ 161 (979)
+..... .+..+++.++|+||++... ..+.+...+.....+.++|++|+...- .. .......++
T Consensus 96 ~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~ 162 (323)
T 1sxj_B 96 FAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILR 162 (323)
T ss_dssp HHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred HHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEe
Confidence 110000 0003568899999998642 233332222223356777777765432 11 112335899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHHHH
Q 002024 162 VRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVGRA 211 (979)
Q Consensus 162 l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~~ 211 (979)
+.+++.++..+++...+.... ..-.++.+..+++.++|.|. ++..+...
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLED-VKYTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 999999999999987763211 11224567889999999995 45555443
No 147
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.00 E-value=3.9e-10 Score=135.12 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=90.7
Q ss_pred cCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCC-ccccCCcCCcE
Q 002024 381 MLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDL-SVIGELSNLEI 458 (979)
Q Consensus 381 ~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l-~~i~~L~~L~~ 458 (979)
+..+++|+.|+|++|.+..++..+| .+++|++|+|++ .+. .+|..|+.+++|++|+|++|.++.+ ..+++|++|++
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp --CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred hccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 4477888888888888888887765 688888888888 455 8888888888888888888888877 46888888888
Q ss_pred EEcccCcCcccchhhccCccccEEecCCCCCccccCc
Q 002024 459 LSLCRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPH 495 (979)
Q Consensus 459 L~Ls~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~ 495 (979)
|+|++|.+..+|..|++|++|++|++++|.....+|.
T Consensus 298 L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 298 FYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp EECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred EECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 8888888888888888888888888888764444443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.94 E-value=3.3e-09 Score=102.52 Aligned_cols=101 Identities=21% Similarity=0.238 Sum_probs=46.6
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcC-ccCCcCCCEEEeCCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPS-LSFLVDLRTLRLEDCYL 444 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~-~~~l~~L~~L~L~~~~l 444 (979)
+.++++++.+..+|... .++|+.|++++|.+..+++..|..+++|++|+|+++....+|.. |..+++|++|+|++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 34555555555555422 15555555555555555544455555555555555221133332 34444444444444444
Q ss_pred CCCc--cccCCcCCcEEEcccCcCc
Q 002024 445 GDLS--VIGELSNLEILSLCRSSIK 467 (979)
Q Consensus 445 ~~l~--~i~~L~~L~~L~Ls~~~l~ 467 (979)
+.++ .+..+++|++|+|++|.+.
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ceeCHHHhccccCCCEEEeCCCCcc
Confidence 4431 1334444444444444333
No 149
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.3e-08 Score=106.78 Aligned_cols=169 Identities=5% Similarity=-0.007 Sum_probs=108.4
Q ss_pred CCchhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC---C--CeEEEEEeccCCCHHHHHH
Q 002024 10 GIFESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR---Y--DTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~---f--~~~~~~~~~~~~~~~~~~~ 80 (979)
+.+.||++++++|...+. ++..+.+.|+|++|+|||++++.++++...... . -.++++.+....+...+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~ 99 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYE 99 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHH
Confidence 347899999999987765 456678999999999999999999998863221 1 1466788888889999999
Q ss_pred HHHHHhCCccc-ccchHHHHHHHHHHH--hcCCeEEEEEcCCCCccchhhhcCCCCC---CCCCcEEEEEcCChhhh---
Q 002024 81 EIAAVLGLTIC-GIEESARAGYLWERI--KMEKRILVILDDVWERIDLQKVGIPLGE---DHEGCNILLTSRSQGVC--- 151 (979)
Q Consensus 81 ~i~~~l~~~~~-~~~~~~~~~~~~~~l--~~~~~~LlvlDd~~~~~~~~~l~~~~~~---~~~~~~iiiTtr~~~~~--- 151 (979)
.|++++..... ..........+.+.+ ..++++++|+|+++...+.+.+...+.+ ......||.++...+..
T Consensus 100 ~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 100 KIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 99999965321 111223334444443 2467899999999876432222111111 11122344444332211
Q ss_pred ------hccCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 152 ------NQMDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 152 ------~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
.++ ....+.+.+++.+|..+++.+++.
T Consensus 180 L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 180 INIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 122 125799999999999999988773
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.92 E-value=4.5e-09 Score=101.19 Aligned_cols=99 Identities=25% Similarity=0.325 Sum_probs=52.4
Q ss_pred cEEEccCCcccccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCc-CccCCcCCCEEEeCCCC
Q 002024 366 TGISLMSNYIHEVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPP-SLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 366 ~~l~l~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~-~~~~l~~L~~L~L~~~~ 443 (979)
+.+++++|.++.+|... .++|+.|++++|.+..+++..|..+++|++|+|++ .+. .+|. .|..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCCCc
Confidence 45666666666666433 25666666666666666555555555555555555 333 3332 23455555555555555
Q ss_pred CCCCc--cccCCcCCcEEEcccCcC
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSI 466 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l 466 (979)
++.++ .+.++++|++|+|++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 54442 244445555555555443
No 151
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.91 E-value=4.9e-11 Score=118.65 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=109.2
Q ss_pred CceEEEccCC--CCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCc-cccCCcCCcEEEc
Q 002024 386 KLQVLLLQEN--SPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLS-VIGELSNLEILSL 461 (979)
Q Consensus 386 ~L~~L~L~~~--~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~-~i~~L~~L~~L~L 461 (979)
.++...+.++ .+..++. .|..+++|++|+|++ .+. .+| .+..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 3444444443 3334443 588999999999999 555 677 8999999999999999988885 4566799999999
Q ss_pred ccCcCcccchhhccCccccEEecCCCCCccccCc-chhccCcCCcEEEcccCcccccccc-----ccchhccccccccce
Q 002024 462 CRSSIKEIPETFCRLSHLWLLDLDHCRQLALIPH-GVISQLDKLEEFYMWNTFKNWDCET-----NAKVVELQALTRLTN 535 (979)
Q Consensus 462 s~~~l~~lp~~i~~L~~L~~L~l~~c~~~~~~p~-~~l~~L~~L~~L~l~~~~~~~~~~~-----~~~~~~l~~l~~L~~ 535 (979)
++|.+..+| .+.++++|++|++++|. +..++. ..+..+++|++|++++|........ ......+..+++|+.
T Consensus 101 ~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 101 SYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred cCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 999999988 68999999999999965 555543 3378999999999998865322110 011123567788887
Q ss_pred ec
Q 002024 536 LM 537 (979)
Q Consensus 536 L~ 537 (979)
|+
T Consensus 179 Ld 180 (198)
T 1ds9_A 179 LD 180 (198)
T ss_dssp EC
T ss_pred EC
Confidence 76
No 152
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.91 E-value=4e-09 Score=114.33 Aligned_cols=188 Identities=15% Similarity=0.085 Sum_probs=115.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
.|.....++|+++.++.+..++..+..+.+.|+|++|+|||++|+.+++.......-..++.+.++...+...+ +....
T Consensus 20 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 98 (327)
T 1iqp_A 20 RPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKVK 98 (327)
T ss_dssp CCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHHH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHHH
Confidence 45567889999999999999998665556899999999999999999988642211112333433221111100 00000
Q ss_pred HhCCcccccchHHHHHHHHHH--HhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCChhhh-hc-cCCcc
Q 002024 85 VLGLTICGIEESARAGYLWER--IKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQGVC-NQ-MDAQK 158 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~--l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~~~~-~~-~~~~~ 158 (979)
. .... +..+++.++|+||++... ..+.+...+.....+.++|+||...... .. .....
T Consensus 99 ~----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 162 (327)
T 1iqp_A 99 E----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 162 (327)
T ss_dssp H----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEE
T ss_pred H----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCc
Confidence 0 0000 112568899999998652 2333332222234567788887654321 11 11224
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHH
Q 002024 159 IFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGR 210 (979)
Q Consensus 159 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~ 210 (979)
.+++.+++.++..+++...+.... ..-..+....+++.++|.|..+..+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 163 IFRFRPLRDEDIAKRLRYIAENEG-LELTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTT-CEECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 789999999999999988764322 122345688899999999986554433
No 153
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=5.7e-09 Score=100.83 Aligned_cols=98 Identities=23% Similarity=0.260 Sum_probs=60.2
Q ss_pred eEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEcccC
Q 002024 388 QVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCRS 464 (979)
Q Consensus 388 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~~ 464 (979)
+.+++++|.+..+|..+ .++|++|+|++ .+....|..|..+++|++|+|++|+++.++ .+.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777777776543 25666777776 444233455666666666666666666663 2456666666666666
Q ss_pred cCcccchh-hccCccccEEecCCCC
Q 002024 465 SIKEIPET-FCRLSHLWLLDLDHCR 488 (979)
Q Consensus 465 ~l~~lp~~-i~~L~~L~~L~l~~c~ 488 (979)
.+..+|.. +.++++|++|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 66666543 5666666666666643
No 154
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.89 E-value=5.9e-09 Score=112.84 Aligned_cols=167 Identities=20% Similarity=0.202 Sum_probs=116.3
Q ss_pred CCCceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC----CCCC-----------
Q 002024 384 CPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY----LGDL----------- 447 (979)
Q Consensus 384 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~----l~~l----------- 447 (979)
|++|+.|.+.. .+..+++.+|..+++|+.|++++ .+...-+.+|..+.++.++.+.... ...+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888877 77777777788888888888877 3432334556666666665554410 0000
Q ss_pred c----------------------------------------cc-cCCcCCcEEEcccCcCcccch-hhccCccccEEecC
Q 002024 448 S----------------------------------------VI-GELSNLEILSLCRSSIKEIPE-TFCRLSHLWLLDLD 485 (979)
Q Consensus 448 ~----------------------------------------~i-~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~L~~L~l~ 485 (979)
. .+ ..+++|++|+|++|.+..+|. .|.++++|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0 00 127889999999988998875 68889999999998
Q ss_pred CCCCccccCcchhccCcCCc-EEEcccCccccccccccchhccccccccceecccccCCcCCCCC--CCCCCCCeEE
Q 002024 486 HCRQLALIPHGVISQLDKLE-EFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQNSILPSH--MPFQHLPNFT 559 (979)
Q Consensus 486 ~c~~~~~~p~~~l~~L~~L~-~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~ 559 (979)
++ +..++...+..+++|+ .+.+.+... ......|..+++|+.+++..+....++.. ..+++|+.+.
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~~l~------~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPASVT------AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECTTCC------EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred cc--cceehHHHhhCChhccEEEEEcccce------EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 84 7888888889999999 998876321 12235678888999999877777666654 5667777664
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.87 E-value=7.2e-09 Score=99.75 Aligned_cols=98 Identities=26% Similarity=0.233 Sum_probs=53.7
Q ss_pred ceEEEccCCCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCCCCCCc--cccCCcCCcEEEccc
Q 002024 387 LQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCYLGDLS--VIGELSNLEILSLCR 463 (979)
Q Consensus 387 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~l~~l~--~i~~L~~L~~L~Ls~ 463 (979)
.+.+++++|.+..+|..+ .++|++|+|++ .+....|..|..+++|++|+|++|.++.++ .+.++++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 356666666666666543 25566666666 333222445555666666666666555552 245555555555555
Q ss_pred CcCcccch-hhccCccccEEecCCC
Q 002024 464 SSIKEIPE-TFCRLSHLWLLDLDHC 487 (979)
Q Consensus 464 ~~l~~lp~-~i~~L~~L~~L~l~~c 487 (979)
|.+..+|. .+.++++|++|++++|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 55555543 3555555555555554
No 156
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.86 E-value=9.9e-09 Score=110.94 Aligned_cols=180 Identities=13% Similarity=0.099 Sum_probs=112.8
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhc-----CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALN-----NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~-----~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
..|.....|+|++..++++.+.+. ......+.|+|++|+|||++|+.+++... . ..+++.+.......++
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~--~---~~~~~~~~~~~~~~~l 80 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--V---NLRVTSGPAIEKPGDL 80 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT--C---CEEEECTTTCCSHHHH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEeccccCChHHH
Confidence 356678899999999999888775 22346788999999999999999998764 1 2344544433222221
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhc--CCeEEEEEcCCCCccc--hhhhcCCCC--------C----------CC
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKM--EKRILVILDDVWERID--LQKVGIPLG--------E----------DH 136 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~--~~~~LlvlDd~~~~~~--~~~l~~~~~--------~----------~~ 136 (979)
. ..+.. .++.++++|+++.... ...+...+. . ..
T Consensus 81 ~------------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 81 A------------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp H------------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred H------------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 1 11211 4566889999987531 111110000 0 01
Q ss_pred CCcEEEEEcCChh-hhhcc--CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHHHHHh
Q 002024 137 EGCNILLTSRSQG-VCNQM--DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVGRALK 213 (979)
Q Consensus 137 ~~~~iiiTtr~~~-~~~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~ 213 (979)
.+.++|.||.... +...+ +....+.+.+++.+|..+++.+.+..... .-..+....+++.++|.|..+..+...+.
T Consensus 137 ~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 137 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp CCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 2345666665432 21111 12358999999999999999887743222 22346688899999999988877665543
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.81 E-value=2.7e-08 Score=107.31 Aligned_cols=186 Identities=11% Similarity=0.086 Sum_probs=115.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
.|.....++|+++.++.+.+.+..+..+.+.|+|++|+|||++|+.+++.......-..++.++++...+...+.
T Consensus 12 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~----- 86 (319)
T 2chq_A 12 RPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR----- 86 (319)
T ss_dssp SCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS-----
T ss_pred CCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH-----
Confidence 455667899999999999999887655558899999999999999999886321111123344443321111100
Q ss_pred HhCCcccccchHHHHHHHHHH--HhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCChh-hhh-ccCCcc
Q 002024 85 VLGLTICGIEESARAGYLWER--IKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQG-VCN-QMDAQK 158 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~--l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~~-~~~-~~~~~~ 158 (979)
......... +..+++.++|+|+++... ..+.+...+.....+.++|+||.... +.. ......
T Consensus 87 ------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~ 154 (319)
T 2chq_A 87 ------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCA 154 (319)
T ss_dssp ------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCE
T ss_pred ------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCe
Confidence 001111100 112567899999997652 23444443433345667777776543 211 112235
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 159 IFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 159 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
.+++.+++.++..+++...+....- .-..+....+++.++|.+..+...
T Consensus 155 ~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~ 203 (319)
T 2chq_A 155 VFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINA 203 (319)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 8999999999999999887743222 223456788899999988765433
No 158
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=5.5e-08 Score=107.41 Aligned_cols=197 Identities=13% Similarity=0.102 Sum_probs=113.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++||+++++.+...+..+. ...+.|+|++|+|||++|+.+++.......... ..+ ........+.
T Consensus 11 rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~----~~~~~~~~~~ 83 (373)
T 1jr3_A 11 RPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPC----GVCDNCREIE 83 (373)
T ss_dssp CCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCC----SSSHHHHHHH
T ss_pred CCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCC----cccHHHHHHh
Confidence 45667789999999999999887543 356889999999999999999987753221100 000 0000011111
Q ss_pred HHhCC-----cccccchHHHHHHHHHHHh----cCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCChh-hh
Q 002024 84 AVLGL-----TICGIEESARAGYLWERIK----MEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQG-VC 151 (979)
Q Consensus 84 ~~l~~-----~~~~~~~~~~~~~~~~~l~----~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~~-~~ 151 (979)
..-.. .............+.+.+. .+++.++|+||++... ..+.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 00000 0000000111223333332 3567899999997642 23333322222334566666665432 21
Q ss_pred -hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHH
Q 002024 152 -NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVG 209 (979)
Q Consensus 152 -~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 209 (979)
........+++.+++.++..+++...+.... ..-..+.+..+++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1112347899999999999999987663211 11224567889999999998776553
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.71 E-value=2.7e-08 Score=98.36 Aligned_cols=156 Identities=12% Similarity=0.135 Sum_probs=91.0
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcc-----CCCeEEEEEeccCCCHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESK-----RYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~ 79 (979)
.+.....++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++...... ....++++++.....
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 91 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA----- 91 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT-----
T ss_pred hhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc-----
Confidence 4566788999999999999999876667889999999999999999999864311 123345554321100
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHh-cCCeEEEEEcCCCCcc---------chhhhcCCCCCCCCCcEEEEEcCChh
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIK-MEKRILVILDDVWERI---------DLQKVGIPLGEDHEGCNILLTSRSQG 149 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~LlvlDd~~~~~---------~~~~l~~~~~~~~~~~~iiiTtr~~~ 149 (979)
+... ..........+.+.+. .+++.++|+||++... ++..+...+.. ..+..+|+||....
T Consensus 92 -------~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 92 -------GAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDE 162 (195)
T ss_dssp -------TTCS-HHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHH
T ss_pred -------cCCc-cccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHH
Confidence 0000 0001122233333332 4668899999997642 11111111111 22345666665543
Q ss_pred hh-------hccCCcceEEcCCCCHHHHHHHH
Q 002024 150 VC-------NQMDAQKIFIVRTLLEEESWILF 174 (979)
Q Consensus 150 ~~-------~~~~~~~~~~l~~L~~~e~~~l~ 174 (979)
.. ...+.-..+.+.+++.++..+++
T Consensus 163 ~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 163 YRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 11112236889999998877654
No 160
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=6.9e-08 Score=104.37 Aligned_cols=168 Identities=13% Similarity=0.108 Sum_probs=131.2
Q ss_pred cCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC-Cc---CCCCC-cCc------
Q 002024 362 FEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY-IL---PLSLP-PSL------ 428 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~---~~~~p-~~~------ 428 (979)
..+++.+.+.+ .++.++ .|.+|++|+.|++..|.+..+++.+|..+.++..+.+.. .. ...+. ..|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 67899999998 888887 466999999999999999999999999988888777655 10 00000 001
Q ss_pred --------------------------------------------cCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcc
Q 002024 429 --------------------------------------------SFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLC 462 (979)
Q Consensus 429 --------------------------------------------~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls 462 (979)
..+++|+.|+|.+|.++.+ ..|.++++|++|+|+
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0278999999999998888 469999999999999
Q ss_pred cCcCcccch-hhccCcccc-EEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceecc
Q 002024 463 RSSIKEIPE-TFCRLSHLW-LLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMF 538 (979)
Q Consensus 463 ~~~l~~lp~-~i~~L~~L~-~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 538 (979)
++ +..++. .|.++++|+ .+++.+ .+..++...+..+++|+.+++.++... ......|.++++|+.++.
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i~-----~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKIT-----TLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCCC-----EECTTTTCTTCCCCEEEC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCccC-----ccchhhhcCCcchhhhcc
Confidence 97 888864 789999999 999998 578888888999999999999766432 122245777888887753
No 161
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.62 E-value=4.3e-07 Score=95.89 Aligned_cols=181 Identities=15% Similarity=0.153 Sum_probs=108.7
Q ss_pred CCCCCCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 6 SSSKGIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
+.....++|+++.+++|.+.+.. ...+.+.|+|++|+|||++|+.+++.... ..+.+.++.-
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~-----~~~~v~~~~~ 87 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA-----TFIRVVGSEL 87 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-----EEEEEEGGGG
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-----CEEEEehHHH
Confidence 33567899999999999887742 33467889999999999999999987641 1233333221
Q ss_pred CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCC--C
Q 002024 73 LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLG--E 134 (979)
Q Consensus 73 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~--~ 134 (979)
.+. .. .........+........+.+|+|||++... . +..+...+. .
T Consensus 88 ~~~--------------~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 VKK--------------FI-GEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CCC--------------ST-THHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HHh--------------cc-chHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 110 00 0111223333444444677899999996531 1 111111111 1
Q ss_pred CCCCcEEEEEcCChhhhh-----ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCC-CchHHHHH
Q 002024 135 DHEGCNILLTSRSQGVCN-----QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSG-LPIAILTV 208 (979)
Q Consensus 135 ~~~~~~iiiTtr~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 208 (979)
...+..||.||...+... ..+....+.++..+.++..+++...+.......+ .....+++.+.| .|..+..+
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 234566777877543321 1123357999999999999999988754322211 125778888887 46555554
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.59 E-value=5.1e-07 Score=100.50 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=109.7
Q ss_pred ccCCCCCCchhHHHHH---HHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHH
Q 002024 4 ITSSSKGIFESRKSIV---KQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQ 79 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l---~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~ 79 (979)
+.|.....++|+++.+ ..+...+..+....+.|+|++|+|||++|+.+++... .. ++.++.. .+..++
T Consensus 20 ~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~--~~-----f~~l~a~~~~~~~i- 91 (447)
T 3pvs_A 20 MRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN--AD-----VERISAVTSGVKEI- 91 (447)
T ss_dssp TCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT--CE-----EEEEETTTCCHHHH-
T ss_pred hCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC--CC-----eEEEEeccCCHHHH-
Confidence 3567788999999999 7788888777667889999999999999999998764 22 2222221 122221
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEE-EEcCChhhh---hc
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNIL-LTSRSQGVC---NQ 153 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~ii-iTtr~~~~~---~~ 153 (979)
+.++. ........+++.+|+||+++... ..+.+...+. .+ ...+| .||.+.... ..
T Consensus 92 r~~~~----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le-~~-~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 92 REAIE----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE-DG-TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHH----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHH-TT-SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHH----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh-cC-ceEEEecCCCCcccccCHHH
Confidence 11111 11111224678999999997652 2222222111 12 23333 455554221 11
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHhCCC------CCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 154 MDAQKIFIVRTLLEEESWILFREAAGTV------VENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 154 ~~~~~~~~l~~L~~~e~~~l~~~~~~~~------~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
......+.+.+++.++...++.+..... ....-.++....+++.++|.+..+.-+
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 2234688999999999999998877431 111223467888999999987765544
No 163
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.58 E-value=1.3e-06 Score=91.20 Aligned_cols=200 Identities=13% Similarity=0.116 Sum_probs=110.0
Q ss_pred CCCchhHHHHHHHHHH-------Hhc---CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 9 KGIFESRKSIVKQLLE-------ALN---NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~-------~l~---~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
...++|+...++++.+ .+. ....+.+.|+|++|+|||++|+.+++... .. .+.+.++...
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~---~~~i~~~~~~----- 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FP---FIKICSPDKM----- 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CS---EEEEECGGGC-----
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CC---EEEEeCHHHh-----
Confidence 4567888777766665 232 34457889999999999999999998753 22 2233332210
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc-----------cc-hhhhcCCCC---CCCCCcEEEE
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER-----------ID-LQKVGIPLG---EDHEGCNILL 143 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~-----------~~-~~~l~~~~~---~~~~~~~iii 143 (979)
++.. ..........+.+.....++.+||+||++.. .. +..+...+. .......||.
T Consensus 102 -------~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ 172 (272)
T 1d2n_A 102 -------IGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIG 172 (272)
T ss_dssp -------TTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEE
T ss_pred -------cCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEE
Confidence 0100 0000112233333333467889999998653 11 122222121 1233445667
Q ss_pred EcCChhhhhc---c-CCcceEEcCCCCH-HHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC------chHHHHHHHHH
Q 002024 144 TSRSQGVCNQ---M-DAQKIFIVRTLLE-EESWILFREAAGTVVENSDLNSIAREVAAKCSGL------PIAILTVGRAL 212 (979)
Q Consensus 144 Ttr~~~~~~~---~-~~~~~~~l~~L~~-~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~------Plal~~~~~~l 212 (979)
||...+.... . +-...+.+++++. ++...++.+... -..+....+++.+.|+ ..++..+-..
T Consensus 173 ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a- 245 (272)
T 1d2n_A 173 TTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS- 245 (272)
T ss_dssp EESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH-
T ss_pred ecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHH-
Confidence 7776644322 1 1246789999998 666666655321 1234578888888884 3333333222
Q ss_pred hcCCChhHHHHHHHHHhhcCCC
Q 002024 213 KNRNNKYVWIDAAQQLKKSTPT 234 (979)
Q Consensus 213 ~~~~~~~~~~~~~~~l~~~~~~ 234 (979)
........+.++++.+++....
T Consensus 246 ~~~~~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 246 LQMDPEYRVRKFLALLREEGAS 267 (272)
T ss_dssp TTSCGGGHHHHHHHHHHHTSCC
T ss_pred hhhchHHHHHHHHHHHHHcCCc
Confidence 2222336777777777665443
No 164
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.58 E-value=5.8e-08 Score=99.85 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=105.3
Q ss_pred CCCCCchhHH---HHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 7 SSKGIFESRK---SIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 7 ~~~~~~vgR~---~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
...+.|+|++ +.++.+.........+.+.|+|++|+|||++|+.+++..... ...+.|+++...... +.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~ 96 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------ST 96 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CG
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HH
Confidence 4556788743 677777777766556788999999999999999999987633 345677776542110 00
Q ss_pred HHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----hhhhcCCCCC-CCCC-cEEEEEcCChh--------
Q 002024 84 AVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----LQKVGIPLGE-DHEG-CNILLTSRSQG-------- 149 (979)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----~~~l~~~~~~-~~~~-~~iiiTtr~~~-------- 149 (979)
+ ..+.+ .++.++|+||++.... .+.+...+.. ...+ .++|+||+...
T Consensus 97 ~-----------------~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~ 157 (242)
T 3bos_A 97 A-----------------LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLP 157 (242)
T ss_dssp G-----------------GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCH
T ss_pred H-----------------HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhh
Confidence 0 00011 3456889999875421 1222111110 0112 24777766321
Q ss_pred -hhhccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 150 -VCNQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 150 -~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
+..++.....+++++++.++..+++...+.... ..-..+....+++.++|.+..+..+
T Consensus 158 ~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 158 DLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp HHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHH
T ss_pred hhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHH
Confidence 111112237899999999999999988764221 1223456788999999987766544
No 165
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=2.5e-07 Score=101.28 Aligned_cols=196 Identities=12% Similarity=0.079 Sum_probs=114.2
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCC-CeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRY-DTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|+++.++.+...+..+..+.+.|+|++|+|||++|+.+++.......+ ..+..+.++.......+...+
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 110 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKV- 110 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHH-
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHH-
Confidence 455678899999999999999987644448899999999999999999886421111 123444444433333222222
Q ss_pred HHhC-CcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCChh-hhhc-cCCcc
Q 002024 84 AVLG-LTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDHEGCNILLTSRSQG-VCNQ-MDAQK 158 (979)
Q Consensus 84 ~~l~-~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~~~-~~~~-~~~~~ 158 (979)
..+. ......... .......+++-++++|+++.... ...+...+.......++|++|.... +... .....
T Consensus 111 ~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~ 185 (353)
T 1sxj_D 111 KNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185 (353)
T ss_dssp HHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSE
T ss_pred HHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCc
Confidence 1111 100000000 00011124567999999876422 2223222222234556676665432 2111 11225
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 159 IFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 159 ~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
.+.+.+++.++....+...+....- .-.++....|++.++|.|..+..
T Consensus 186 ~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~ 233 (353)
T 1sxj_D 186 KFRFKALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGIT 233 (353)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHH
T ss_pred eEEeCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 7899999999999999887642221 22345788999999999886443
No 166
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.54 E-value=1.8e-06 Score=89.78 Aligned_cols=184 Identities=15% Similarity=0.161 Sum_probs=104.9
Q ss_pred CCCCCchhHHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 7 SSKGIFESRKSIVKQLLEALN---N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l~---~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
.....++|.++.++++.+.+. . ...+.|.|+|++|+|||++|+.+++... .. .+.+.++.-.+
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~~~~~~~~~ 77 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ--VP---FLAMAGAEFVE 77 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT--CC---EEEEETTTTSS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC--CC---EEEechHHHHh
Confidence 456678999988888876542 1 2235688999999999999999998764 21 33444433211
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc-------------c----hhhhcCCCCC--C
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI-------------D----LQKVGIPLGE--D 135 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~-------------~----~~~l~~~~~~--~ 135 (979)
. ..+ ........+.+......+.+|++||++... . +..+...+.. .
T Consensus 78 ~--------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 142 (262)
T 2qz4_A 78 V--------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT 142 (262)
T ss_dssp S--------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT
T ss_pred h--------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC
Confidence 0 000 011222333444444567899999997641 0 1122111111 1
Q ss_pred CCCcEEEEEcCChhhhh--cc---CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHH
Q 002024 136 HEGCNILLTSRSQGVCN--QM---DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVG 209 (979)
Q Consensus 136 ~~~~~iiiTtr~~~~~~--~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~ 209 (979)
..+..||.||....... .. +-...+.++..+.++..+++...+...............+++.+.|++- .|..+.
T Consensus 143 ~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~ 222 (262)
T 2qz4_A 143 TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANIC 222 (262)
T ss_dssp TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHH
Confidence 23556666776543221 11 2346788999999999999988774333222222335778888888754 555443
Q ss_pred H
Q 002024 210 R 210 (979)
Q Consensus 210 ~ 210 (979)
.
T Consensus 223 ~ 223 (262)
T 2qz4_A 223 N 223 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 167
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=2.2e-07 Score=106.37 Aligned_cols=195 Identities=13% Similarity=-0.007 Sum_probs=111.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcC-----------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEE
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNN-----------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMA 67 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~-----------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~ 67 (979)
.|.....++|+++.++++.+++.. +..+.+.|+|++|+|||++|+.+++... ..++.+
T Consensus 34 rP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-----~~~i~i 108 (516)
T 1sxj_A 34 APTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-----YDILEQ 108 (516)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-----CEEEEE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-----CCEEEE
Confidence 355667899999999999999864 1346889999999999999999998873 234455
Q ss_pred EeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHH-HhcCCeEEEEEcCCCCccc-----hhhhcCCCCCCCCCcEE
Q 002024 68 VVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWER-IKMEKRILVILDDVWERID-----LQKVGIPLGEDHEGCNI 141 (979)
Q Consensus 68 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~-l~~~~~~LlvlDd~~~~~~-----~~~l~~~~~~~~~~~~i 141 (979)
+++.......+ ...+....... .... ......+. ...+++.+||+|+++.... +..+...+ .. .+..|
T Consensus 109 n~s~~~~~~~~-~~~i~~~~~~~-~~~~--~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l-~~-~~~~i 182 (516)
T 1sxj_A 109 NASDVRSKTLL-NAGVKNALDNM-SVVG--YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC-RK-TSTPL 182 (516)
T ss_dssp CTTSCCCHHHH-HHTGGGGTTBC-CSTT--TTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH-HH-CSSCE
T ss_pred eCCCcchHHHH-HHHHHHHhccc-cHHH--HHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH-Hh-cCCCE
Confidence 55554443322 22222111100 0000 00000000 1136788999999976421 12221111 11 22335
Q ss_pred EEEcCCh---hhhhccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCC-CchHHHHHHHH
Q 002024 142 LLTSRSQ---GVCNQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSG-LPIAILTVGRA 211 (979)
Q Consensus 142 iiTtr~~---~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~ 211 (979)
|+++... .+....+....+.+++++.++..+++.+.+....-. -..+....|++.++| ++.++..+...
T Consensus 183 Ili~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~-i~~~~l~~la~~s~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 183 ILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFK-LDPNVIDRLIQTTRGDIRQVINLLSTI 255 (516)
T ss_dssp EEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHTTTCHHHHHHHHTHH
T ss_pred EEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5444432 122222334689999999999999987766321111 123457889999999 55566665443
No 168
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.49 E-value=6.7e-06 Score=87.75 Aligned_cols=186 Identities=19% Similarity=0.173 Sum_probs=111.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
++.....++|-++.++.|.+.+. ....+-|.|+|++|+|||++|+.+++.... . ..+.+..+.-
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~---~~~~i~~~~l 82 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDL 82 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-C---EEEEEECCSS
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-C---cEEEEEhHHH
Confidence 34456788999999988887662 122367889999999999999999987621 1 2233443321
Q ss_pred CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhhcCC---CCCCC
Q 002024 73 LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKVGIP---LGEDH 136 (979)
Q Consensus 73 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l~~~---~~~~~ 136 (979)
.+ ...+ ........+.+.....++.+|+||+++.... ...+... +....
T Consensus 83 ~~--------------~~~g-~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~ 147 (322)
T 1xwi_A 83 VS--------------KWLG-ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDN 147 (322)
T ss_dssp CC--------------SSCC-SCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCC
T ss_pred Hh--------------hhhh-HHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccC
Confidence 11 0001 1123344444444457788999999976410 1111111 11123
Q ss_pred CCcEEEEEcCChhhhhc---cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHHHH
Q 002024 137 EGCNILLTSRSQGVCNQ---MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTVGR 210 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~~---~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 210 (979)
.+..||.||........ -+-...+.++..+.++..+++........... .+.....|++.+.|+ +..|..+..
T Consensus 148 ~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 148 DGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp TTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44556656654422210 03346788999999999999998875433221 234578899999987 555666544
No 169
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.49 E-value=3.1e-07 Score=100.16 Aligned_cols=100 Identities=20% Similarity=0.277 Sum_probs=63.9
Q ss_pred EEEccCC-cccccCCcCCCCCceEEEccC-CCCcccChhhhcCCCCccEEEecC-CcCCCCCcCccCCcCCCEEEeCCCC
Q 002024 367 GISLMSN-YIHEVPAMLECPKLQVLLLQE-NSPLVIPDKFFQGMKDLKVLDLSY-ILPLSLPPSLSFLVDLRTLRLEDCY 443 (979)
Q Consensus 367 ~l~l~~~-~~~~~~~~~~~~~L~~L~L~~-~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~p~~~~~l~~L~~L~L~~~~ 443 (979)
.++.+++ .++.+|.+..+++|+.|+|++ |.+..+++..|..+++|++|+|++ .+....|..|..+++|++|+|++|+
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 4566666 677777755667777777775 777777776677777777777777 4443334456667777777777666
Q ss_pred CCCCc--cccCCcCCcEEEcccCcCc
Q 002024 444 LGDLS--VIGELSNLEILSLCRSSIK 467 (979)
Q Consensus 444 l~~l~--~i~~L~~L~~L~Ls~~~l~ 467 (979)
++.++ .+..+. |++|+|.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66552 233333 666666666554
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=2.6e-06 Score=93.93 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=64.2
Q ss_pred ccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCC
Q 002024 365 LTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDC 442 (979)
Q Consensus 365 l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~ 442 (979)
++.+.+.+ .+..++ .|.+|++|+.+++..|.+..++...|. ...|+.+.|..++...-..+|..+.+|+.+.+..+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCchheehhhHhhCCCCCCEEecCCC
Confidence 44444443 333333 233455555555555555555554444 34555555544333222234444555555555432
Q ss_pred ---------------------CCCCC--ccccCCcCCcEEEcccCcCc-----ccc-hhhccCccccEEecCCCCCcccc
Q 002024 443 ---------------------YLGDL--SVIGELSNLEILSLCRSSIK-----EIP-ETFCRLSHLWLLDLDHCRQLALI 493 (979)
Q Consensus 443 ---------------------~l~~l--~~i~~L~~L~~L~Ls~~~l~-----~lp-~~i~~L~~L~~L~l~~c~~~~~~ 493 (979)
.++.+ ..|.++++|+.+++.++.+. .++ ..|.+|++|+.+.+.+ .+..+
T Consensus 237 l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I 314 (401)
T 4fdw_A 237 VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRIL 314 (401)
T ss_dssp CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEE
T ss_pred ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEE
Confidence 22222 23444555555555444332 222 2444555555555543 24444
Q ss_pred CcchhccCcCCcEEEcc
Q 002024 494 PHGVISQLDKLEEFYMW 510 (979)
Q Consensus 494 p~~~l~~L~~L~~L~l~ 510 (979)
+...+..+++|+.+.+.
T Consensus 315 ~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp CTTTTTTCCSCCEEEEC
T ss_pred hhhhhcCCCCccEEEEC
Confidence 44445555555555553
No 171
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.44 E-value=3.7e-06 Score=90.04 Aligned_cols=185 Identities=16% Similarity=0.099 Sum_probs=111.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
++.....++|.++.+++|.+.+. ....+-|.|+|++|+|||++|+.+++... .. .+.++++.
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~~---~~~v~~~~- 86 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSSD- 86 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHT--CE---EEEEEHHH-
T ss_pred CCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHC--CC---EEEEchHH-
Confidence 33456788999999999998872 11235688999999999999999998764 22 23333321
Q ss_pred CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhhc---CCCCCCC
Q 002024 73 LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKVG---IPLGEDH 136 (979)
Q Consensus 73 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l~---~~~~~~~ 136 (979)
+..... .........+.+......+.+|+||+++.... ...+. ..+....
T Consensus 87 ---------l~~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 152 (322)
T 3eie_A 87 ---------LVSKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDS 152 (322)
T ss_dssp ---------HHTTTG-----GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSC
T ss_pred ---------Hhhccc-----chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccC
Confidence 111100 01123344444444456778999999975411 11111 1111223
Q ss_pred CCcEEEEEcCChhhhhc---cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHHHH
Q 002024 137 EGCNILLTSRSQGVCNQ---MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTVGR 210 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~~---~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 210 (979)
.+..||.||........ -+-...+.++..+.++..+++...+....... .......+++.+.|+ +..|..+..
T Consensus 153 ~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 153 QGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred CceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45566667765432210 02346788999999999999999886433221 234578899999884 656665543
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.43 E-value=4.2e-06 Score=90.64 Aligned_cols=177 Identities=16% Similarity=0.158 Sum_probs=108.0
Q ss_pred ccCCCCCCchhHHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHH
Q 002024 4 ITSSSKGIFESRKSIVKQLLEALNN-----ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKI 78 (979)
Q Consensus 4 ~~~~~~~~~vgR~~~l~~l~~~l~~-----~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 78 (979)
..|.....|+|+++.++++..++.. ...+.|.|+|++|+|||++|+.+++... .. .+.+.+........+
T Consensus 23 ~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~--~~---~~~~~~~~~~~~~~~ 97 (338)
T 3pfi_A 23 LRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMS--AN---IKTTAAPMIEKSGDL 97 (338)
T ss_dssp CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTT--CC---EEEEEGGGCCSHHHH
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhC--CC---eEEecchhccchhHH
Confidence 3466778899999999999888752 3345688999999999999999988764 22 233444322211111
Q ss_pred HHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCC------------------CCCCCC
Q 002024 79 QGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPL------------------GEDHEG 138 (979)
Q Consensus 79 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~------------------~~~~~~ 138 (979)
...... ..+..+|++|+++.... ...+...+ ....++
T Consensus 98 ---------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T 3pfi_A 98 ---------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPK 154 (338)
T ss_dssp ---------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCC
T ss_pred ---------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCC
Confidence 111111 24567888999976521 11111100 001123
Q ss_pred cEEEEEcCChhhh-hc-c-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHHH
Q 002024 139 CNILLTSRSQGVC-NQ-M-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTVG 209 (979)
Q Consensus 139 ~~iiiTtr~~~~~-~~-~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~ 209 (979)
..+|.+|...... .. . +....+.+++++.++...++.+.+.... ..-..+....+++.+.|.|..+..+.
T Consensus 155 ~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 155 FTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred eEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 4566666543221 11 1 2246899999999999999988774322 22234567888899999986665443
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.43 E-value=4.4e-06 Score=90.76 Aligned_cols=185 Identities=11% Similarity=0.031 Sum_probs=109.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
++.....++|+++.+++|.+.+. ....+.|.|+|++|+|||++|+.++.... . ..+.++++.-
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~--~---~~~~i~~~~l 153 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSG--A---TFFSISASSL 153 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTT--C---EEEEEEGGGG
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcC--C---eEEEEehHHh
Confidence 34456779999999999988763 12346788999999999999999998763 1 2345554432
Q ss_pred CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc-------------chhhhcCCCC----CC
Q 002024 73 LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI-------------DLQKVGIPLG----ED 135 (979)
Q Consensus 73 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~-------------~~~~l~~~~~----~~ 135 (979)
... ..+ ........+........+.+|+||+++... ....+...+. ..
T Consensus 154 ~~~--------------~~g-~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 218 (357)
T 3d8b_A 154 TSK--------------WVG-EGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSS 218 (357)
T ss_dssp CCS--------------STT-HHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----C
T ss_pred hcc--------------ccc-hHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccC
Confidence 110 000 011222333333334677899999985431 0111211111 11
Q ss_pred CCCcEEEEEcCChhhh-hc--cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCC-CchHHHHHHH
Q 002024 136 HEGCNILLTSRSQGVC-NQ--MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSG-LPIAILTVGR 210 (979)
Q Consensus 136 ~~~~~iiiTtr~~~~~-~~--~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~ 210 (979)
..+..||.||...... .. -+-...+.+...+.++..+++...+..... .-.++....+++.+.| .+..+..+..
T Consensus 219 ~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 219 EDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp CCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 2344566566543221 10 023357889999999999999877643221 1123567889999998 4666666544
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.42 E-value=3e-07 Score=100.52 Aligned_cols=197 Identities=10% Similarity=0.048 Sum_probs=107.6
Q ss_pred cCCCCCCchhHHHHHHHHHHHh-cCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCe----------------
Q 002024 5 TSSSKGIFESRKSIVKQLLEAL-NNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR----YDT---------------- 63 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l-~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~----f~~---------------- 63 (979)
.|.....++|+++.++.+..++ ..+..+.+.|+|++|+||||+|+.++........ ++.
T Consensus 9 rP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 9 RPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 4666788999999999999998 6554444899999999999999999986421111 000
Q ss_pred ----EEEEEeccCC-CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCCCCCC
Q 002024 64 ----VVMAVVSHNL-SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPLGEDH 136 (979)
Q Consensus 64 ----~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~~~~~ 136 (979)
.+.+..+... ......+++++.+..... ... .. .+ ..+ .+++-++|+|+++.... .+.+...+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~--~~-~l-s~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~~ 162 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-VDF--QD-SK-DGL-AHRYKCVIINEANSLTKDAQAALRRTMEKYS 162 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHST
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcc-ccc--cc-cc-ccc-CCCCeEEEEeCccccCHHHHHHHHHHHHhhc
Confidence 1111111100 000012222222211100 000 00 00 001 24667899999987422 222222221123
Q ss_pred CCcEEEEEcCCh-hhhh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccc-hHHHHHHHHHcCCCchHHHHH
Q 002024 137 EGCNILLTSRSQ-GVCN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDL-NSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 137 ~~~~iiiTtr~~-~~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~-~~~~~~i~~~~~g~Plal~~~ 208 (979)
.+.++|++|... .+.. .......+++++++.++..+.+...+....- .-. ++.+..|++.++|.+..+..+
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 456777776653 2221 1122378999999999999999877632111 112 356788999999987755543
No 175
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=9.2e-06 Score=89.57 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=78.7
Q ss_pred CceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEccc
Q 002024 386 KLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCR 463 (979)
Q Consensus 386 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~ 463 (979)
+|+.+.+..+ +..+...+|..+ +|+.+.+.+++...-+.+|..+.+|+.+++.++.++.+ ..+. ..+|+.+.|..
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CccEEEeCCC-ccEECHHhcCCC-CceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence 5666666544 556666666663 46666666644423335566666666666666665555 2233 46666666664
Q ss_pred CcCcccc-hhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceeccccc
Q 002024 464 SSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFP 541 (979)
Q Consensus 464 ~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 541 (979)
+ +..++ ..|.++++|+.+++.. .+..++...+.. .+|+.+.+..+.. ......+..+++|+.+.+..+
T Consensus 213 ~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~------~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 213 T-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNGVT------NIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp T-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETTCC------EECTTTTTTCTTCCEEEEESS
T ss_pred c-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCCcc------EEChhHhhCCCCCCEEEeCCc
Confidence 3 55554 3566666666666665 245555554555 5666666543211 111234455666666665543
No 176
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.40 E-value=3.7e-08 Score=107.70 Aligned_cols=152 Identities=16% Similarity=0.102 Sum_probs=94.8
Q ss_pred cCCccEEEccCCcccccC-----CcC--CCCCceEEEccCCCCccc-ChhhhcCCCCccEEEecC-CcCCCCCcCc----
Q 002024 362 FEDLTGISLMSNYIHEVP-----AML--ECPKLQVLLLQENSPLVI-PDKFFQGMKDLKVLDLSY-ILPLSLPPSL---- 428 (979)
Q Consensus 362 ~~~l~~l~l~~~~~~~~~-----~~~--~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~L~L~~-~~~~~~p~~~---- 428 (979)
.+.++.|++++|.++... ... ..++|+.|+|++|.+... ...++..+++|++|+|++ .+...-...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 356888999988887422 111 346888999988887642 222333456788888888 3331111222
Q ss_pred -cCCcCCCEEEeCCCCCCCC------ccccCCcCCcEEEcccCcCcc-----cchhhccCccccEEecCCCCCccc----
Q 002024 429 -SFLVDLRTLRLEDCYLGDL------SVIGELSNLEILSLCRSSIKE-----IPETFCRLSHLWLLDLDHCRQLAL---- 492 (979)
Q Consensus 429 -~~l~~L~~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~l~~-----lp~~i~~L~~L~~L~l~~c~~~~~---- 492 (979)
...++|++|+|++|.+++. ..+...++|++|+|++|.+.. ++..+...++|++|++++|.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2356788888888876543 234667778888888887663 345566777888888887653211
Q ss_pred cCcchhccCcCCcEEEcccCcc
Q 002024 493 IPHGVISQLDKLEEFYMWNTFK 514 (979)
Q Consensus 493 ~p~~~l~~L~~L~~L~l~~~~~ 514 (979)
++.. +...++|++|++++|..
T Consensus 231 l~~~-L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 231 LARA-AREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHH-HHHCSSCCEEECTTSSC
T ss_pred HHHH-HHhCCCCCEEeccCCCC
Confidence 1111 34557777777777754
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.39 E-value=2e-06 Score=92.64 Aligned_cols=185 Identities=11% Similarity=0.030 Sum_probs=106.3
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCc-eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENV-SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~-~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
.|.....++|+++.++.+.+++..+.. ..+.++|++|+|||++|+.+++... ..++.++++.. .... .+..+
T Consensus 21 rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~-----~~~~~i~~~~~-~~~~-i~~~~ 93 (324)
T 3u61_B 21 RPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN-----ADMMFVNGSDC-KIDF-VRGPL 93 (324)
T ss_dssp CCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-----EEEEEEETTTC-CHHH-HHTHH
T ss_pred CCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----CCEEEEccccc-CHHH-HHHHH
Confidence 356678899999999999999985543 5677888899999999999998764 22445554332 2222 22211
Q ss_pred HHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc---chhhhcCCCCCCCCCcEEEEEcCChhhh-hcc-CCcc
Q 002024 84 AVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI---DLQKVGIPLGEDHEGCNILLTSRSQGVC-NQM-DAQK 158 (979)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~---~~~~l~~~~~~~~~~~~iiiTtr~~~~~-~~~-~~~~ 158 (979)
..+..... ..+++-++|+||++... ..+.+...+.....+.++|+||....-. ..+ ..-.
T Consensus 94 ~~~~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~ 158 (324)
T 3u61_B 94 TNFASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCR 158 (324)
T ss_dssp HHHHHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSE
T ss_pred HHHHhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCc
Confidence 11110000 02478899999998764 2222222221122455777777654311 100 1125
Q ss_pred eEEcCCCCHHHHHHHH-------HHHhCCCCCCccchHHHHHHHHHcCCCchH-HHHHHHH
Q 002024 159 IFIVRTLLEEESWILF-------REAAGTVVENSDLNSIAREVAAKCSGLPIA-ILTVGRA 211 (979)
Q Consensus 159 ~~~l~~L~~~e~~~l~-------~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~~~~ 211 (979)
.+++++++.+|..+++ .+.+....-.....+....+++.++|.+.. +..+-..
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~ 219 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSY 219 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7999999988854433 222211111111125678889999887654 4444333
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=1.1e-06 Score=98.13 Aligned_cols=185 Identities=15% Similarity=0.124 Sum_probs=107.6
Q ss_pred CCCCch-hH--HHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 8 SKGIFE-SR--KSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 8 ~~~~~v-gR--~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
..+.|+ |. ......+.+....++ ...+.|+|++|+|||+||+.+++.......-..++++++.. +...+.
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~ 176 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLV 176 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHH
Confidence 345566 53 333444555554443 56788999999999999999999876432233466665543 333444
Q ss_pred HHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEcCChh---------
Q 002024 84 AVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----LQKVGIPLGE-DHEGCNILLTSRSQG--------- 149 (979)
Q Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----~~~l~~~~~~-~~~~~~iiiTtr~~~--------- 149 (979)
..+... ....+.+... .++-+|++||++.... .+.+...+.. ...|..||+||....
T Consensus 177 ~~~~~~--------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~ 247 (440)
T 2z4s_A 177 DSMKEG--------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_dssp HHHHTT--------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHH
T ss_pred HHHHcc--------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHH
Confidence 333211 0112222221 2667899999975431 1222221111 134667888887531
Q ss_pred hhhccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 150 VCNQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 150 ~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
+..++.....+.+++++.++..+++.+.+....- .-.+++...|++.+.|.+..+.-+
T Consensus 248 L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 248 LVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 2222333467899999999999999887632111 112345778889999988766543
No 179
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.38 E-value=1.4e-05 Score=88.47 Aligned_cols=131 Identities=16% Similarity=0.192 Sum_probs=70.4
Q ss_pred ccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC--ccc
Q 002024 375 IHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVI 450 (979)
Q Consensus 375 ~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i 450 (979)
++.++ .|.+|.+|+.+.+.. .+..+...+|..+.+|+.+++..++...-..+|..+..|+.+.+... +..+ ..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF 136 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM-LKSIGVEAF 136 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc-eeeecceee
Confidence 33444 355777788777753 36677777777778888887766544222345666666666555433 1111 223
Q ss_pred cCCcCCcEEEcccCcCccc-chhhccCccccEEecCCCCCccccCcchhccCcCCcEEEccc
Q 002024 451 GELSNLEILSLCRSSIKEI-PETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWN 511 (979)
Q Consensus 451 ~~L~~L~~L~Ls~~~l~~l-p~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~ 511 (979)
.+...+...... .+..+ ...|.++++|+.+.+.+. +..++...+..+.+|+.+.+..
T Consensus 137 ~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 137 KGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred ecccccccccCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 333222222111 12222 234666666777766542 3445555566666666665543
No 180
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.37 E-value=6.3e-07 Score=97.71 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=46.0
Q ss_pred CCCcCccCCcCCCEEEeCC-CCCCCCc--cccCCcCCcEEEcccCcCcccc-hhhccCccccEEecCCCCCccccCcchh
Q 002024 423 SLPPSLSFLVDLRTLRLED-CYLGDLS--VIGELSNLEILSLCRSSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVI 498 (979)
Q Consensus 423 ~~p~~~~~l~~L~~L~L~~-~~l~~l~--~i~~L~~L~~L~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l 498 (979)
.+|. +..+.+|++|+|++ |.++.++ .|++|++|++|+|++|.+..+| ..|.+|++|++|++++| .+..+|...+
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHHHc
Confidence 4444 55555555555553 5555442 3555555555555555555443 24555555666665553 2445554433
Q ss_pred ccCcCCcEEEcccCcc
Q 002024 499 SQLDKLEEFYMWNTFK 514 (979)
Q Consensus 499 ~~L~~L~~L~l~~~~~ 514 (979)
..+. |+.|++.+|..
T Consensus 101 ~~~~-L~~l~l~~N~~ 115 (347)
T 2ifg_A 101 QGLS-LQELVLSGNPL 115 (347)
T ss_dssp CSCC-CCEEECCSSCC
T ss_pred ccCC-ceEEEeeCCCc
Confidence 3333 66666655543
No 181
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=4.5e-08 Score=107.01 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=98.3
Q ss_pred CCCceEEEccCCCCcccChhhhcC-----CCCccEEEecC-CcCCCCCcC-ccCCcCCCEEEeCCCCCCCC--ccc----
Q 002024 384 CPKLQVLLLQENSPLVIPDKFFQG-----MKDLKVLDLSY-ILPLSLPPS-LSFLVDLRTLRLEDCYLGDL--SVI---- 450 (979)
Q Consensus 384 ~~~L~~L~L~~~~~~~~~~~~~~~-----l~~L~~L~L~~-~~~~~~p~~-~~~l~~L~~L~L~~~~l~~l--~~i---- 450 (979)
.++|+.|++++|.+.......+.. .++|++|+|++ .+...-... ...+++|++|+|++|.+++. ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357888888888877543332222 26888888888 333111112 23466788888888877654 122
Q ss_pred -cCCcCCcEEEcccCcCcc-----cchhhccCccccEEecCCCCCcccc-----CcchhccCcCCcEEEcccCccccccc
Q 002024 451 -GELSNLEILSLCRSSIKE-----IPETFCRLSHLWLLDLDHCRQLALI-----PHGVISQLDKLEEFYMWNTFKNWDCE 519 (979)
Q Consensus 451 -~~L~~L~~L~Ls~~~l~~-----lp~~i~~L~~L~~L~l~~c~~~~~~-----p~~~l~~L~~L~~L~l~~~~~~~~~~ 519 (979)
...++|++|+|++|.+.. ++..+..+++|++|++++|. +... +.. +...++|++|++++|......
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTA- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHH-
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHH-
Confidence 346778888888887753 45556778888888888865 3321 222 566678888888887542111
Q ss_pred cccchhccccccccceecccccCCc
Q 002024 520 TNAKVVELQALTRLTNLMFHFPQNS 544 (979)
Q Consensus 520 ~~~~~~~l~~l~~L~~L~l~~~~~~ 544 (979)
.......+...++|+.|+++++.+.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCC
Confidence 0122234556678888888877654
No 182
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.35 E-value=2.8e-06 Score=91.95 Aligned_cols=184 Identities=10% Similarity=0.037 Sum_probs=106.1
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
.|.....++|.++.++.|...+..+..+-+.++|++|+||||+|+.++........-..+..++.+...+...+. .++.
T Consensus 20 rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 20 RPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR-NQIK 98 (340)
T ss_dssp CCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH-THHH
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH-HHHH
Confidence 455667789999999999998887654448899999999999999999886421110123333333322222211 1111
Q ss_pred HhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCChh-hhh-ccCCcceE
Q 002024 85 VLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQG-VCN-QMDAQKIF 160 (979)
Q Consensus 85 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~~-~~~-~~~~~~~~ 160 (979)
.+..... ...+.+-++|+|+++... ..+.+...+.......++|++|.... +.. .......+
T Consensus 99 ~~~~~~~--------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~ 164 (340)
T 1sxj_C 99 DFASTRQ--------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 164 (340)
T ss_dssp HHHHBCC--------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred HHHhhcc--------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeE
Confidence 1110000 001347889999997542 22222221211224556666665432 111 11223578
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 161 IVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 161 ~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
++.+++.++..+.+.+.+....- .-.++....+++.++|-+..
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~~-~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 165 RFQPLPQEAIERRIANVLVHEKL-KLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTTC-CBCHHHHHHHHHHHTTCHHH
T ss_pred eccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHH
Confidence 99999999999988877632111 12234577888888887764
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.34 E-value=1.7e-06 Score=92.43 Aligned_cols=149 Identities=11% Similarity=0.106 Sum_probs=87.4
Q ss_pred CchhHHHHHHHHHHHhc---------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCC--eEEEEEeccCC
Q 002024 11 IFESRKSIVKQLLEALN---------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYD--TVVMAVVSHNL 73 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~---------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~--~~~~~~~~~~~ 73 (979)
.++|.++.++.|.+.+. ......+.|+|++|+|||++|+.+++......... .++.++.+.-
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l- 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL- 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT-
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh-
Confidence 47899998888876653 23345688999999999999999998875433221 2333332211
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc-----------cchhhhcCCCCCCCCCcEEE
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER-----------IDLQKVGIPLGEDHEGCNIL 142 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~-----------~~~~~l~~~~~~~~~~~~ii 142 (979)
.....+.. ......+.+.. +.-+|++|+++.. .....+...+.....+..+|
T Consensus 111 -------------~~~~~g~~-~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 111 -------------VGQYIGHT-APKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp -------------CCSSTTCH-HHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred -------------hhhccccc-HHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 00000101 11122222222 3358999999743 11233322222234456777
Q ss_pred EEcCChh----------hhhccCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 143 LTSRSQG----------VCNQMDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 143 iTtr~~~----------~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
.||.... +..+ ....+.+++++.++..+++...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 7775432 1222 237899999999999999987774
No 184
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.32 E-value=8.1e-06 Score=87.79 Aligned_cols=170 Identities=11% Similarity=0.072 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHhcCCC-ceEEEEEcCCCCcHHHHHHHHHHHhhhccC--------------------CCeEEEEEec--
Q 002024 14 SRKSIVKQLLEALNNEN-VSVIGLCGMGGVGKTTLAKEIGKQVQESKR--------------------YDTVVMAVVS-- 70 (979)
Q Consensus 14 gR~~~l~~l~~~l~~~~-~~~i~i~G~~GiGKT~La~~~~~~~~~~~~--------------------f~~~~~~~~~-- 70 (979)
-.++..+.+...+..+. ...+.++|+.|+|||++|+.+++....... ++ +.++...
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~ 84 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG 84 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc
Confidence 34666777877776554 457889999999999999999997652211 12 2233221
Q ss_pred -cCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCC
Q 002024 71 -HNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRS 147 (979)
Q Consensus 71 -~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~ 147 (979)
...+..+ ++++.+.+.... ..+++-++|+|+++... ..+.+...+.....+..+|++|.+
T Consensus 85 ~~~~~i~~-ir~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 85 KNTLGVDA-VREVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp CSSBCHHH-HHHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred CCCCCHHH-HHHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 1111111 122222222110 02567899999998753 233333333233345666666655
Q ss_pred hh-hhh-ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 148 QG-VCN-QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 148 ~~-~~~-~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
.+ +.. ..+.-..+++.+++.++..+.+.+... -.++.+..+++.++|.|..+..
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT------MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 42 221 112336899999999999999988761 1234567899999999976544
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.32 E-value=1.3e-05 Score=88.31 Aligned_cols=184 Identities=15% Similarity=0.102 Sum_probs=106.3
Q ss_pred CCCCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 6 SSSKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.....++|++..++.|.+.+. ....+-|.|+|++|+|||++|+.+++... . .++.++++.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~--~---~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN--A---TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT--C---EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc--C---cEEEeeHHHhh
Confidence 3356789999999999998872 12246788999999999999999988754 1 23344433221
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--------c-----hhhhcCCC---CC-CC
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--------D-----LQKVGIPL---GE-DH 136 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--------~-----~~~l~~~~---~~-~~ 136 (979)
+. . .+ ........+.+......+.+|+||+++... . ...+...+ .. ..
T Consensus 186 ~~--~-------~g------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 186 SK--Y-------VG------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred cc--c-------cc------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 10 0 00 011223333343434567899999997541 0 11111111 11 12
Q ss_pred CCcEEEEEcCChhhh-hc-c-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHHH
Q 002024 137 EGCNILLTSRSQGVC-NQ-M-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVGR 210 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~-~~-~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 210 (979)
....||.||...+.. .. . +-...+.+...+.++..+++...+...... -.++....+++.+.|+.- ++..+..
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334555566543221 10 1 223568899999999999999887543222 223467889999988644 6655533
No 186
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.31 E-value=4.8e-06 Score=90.26 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=109.0
Q ss_pred CCCCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 6 SSSKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.....++|.++.++.|.+.+. ....+-|.|+|++|+|||++|+.+++... .. .+.+.++
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~---~~~v~~~--- 118 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN--ST---FFSVSSS--- 118 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT--CE---EEEEEHH---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CC---EEEeeHH---
Confidence 4456778999999999988762 11234578999999999999999999874 21 2333322
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhhcCCC---CCCCC
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKVGIPL---GEDHE 137 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l~~~~---~~~~~ 137 (979)
++ .... .+ ........+........+.+|+||+++.... ...+...+ .....
T Consensus 119 ---~l----~~~~----~g-~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 119 ---DL----VSKW----MG-ESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp ---HH----HSCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---C
T ss_pred ---HH----hhhh----cc-hHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCC
Confidence 11 1100 01 1122333444444456789999999975421 11121111 11234
Q ss_pred CcEEEEEcCChhhhh---ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHHHH
Q 002024 138 GCNILLTSRSQGVCN---QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTVGR 210 (979)
Q Consensus 138 ~~~iiiTtr~~~~~~---~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 210 (979)
+..||.||....... .-+-...+.++..+.++..+++........... .......|++.+.|+ +..|..+..
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~~ 262 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVVK 262 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 555666666542211 003446788999999999999998886433211 234578899999884 555665543
No 187
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.31 E-value=8.1e-06 Score=86.39 Aligned_cols=178 Identities=12% Similarity=0.144 Sum_probs=105.5
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
++.....++|.++.+++|.+.+.. ...+.|.|+|++|+|||++|+.++.... .. .+.+.
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~---~i~v~--- 81 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--AN---FISIK--- 81 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CE---EEEEC---
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CC---EEEEE---
Confidence 344567789999999888877641 3346788999999999999999998764 11 22222
Q ss_pred CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------------hhhhcCCCC--
Q 002024 72 NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------------LQKVGIPLG-- 133 (979)
Q Consensus 72 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------------~~~l~~~~~-- 133 (979)
..++... .++.. ...+..+.+......+.++++|+++.... ...+...+.
T Consensus 82 ---~~~l~~~---~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 ---GPELLTM---WFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp ---HHHHHHH---HHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred ---hHHHHhh---hcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 2222221 12211 12233444444446789999999974310 111211111
Q ss_pred CCCCCcEEEEEcCChhhhh--cc---CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchH
Q 002024 134 EDHEGCNILLTSRSQGVCN--QM---DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIA 204 (979)
Q Consensus 134 ~~~~~~~iiiTtr~~~~~~--~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla 204 (979)
....+..||.||...+... .. +-...+.++..+.++..+++........-..+. ....+++.+.|+|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 1233556777776553221 11 234689999999999999998877543221111 145677788888754
No 188
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.31 E-value=5.5e-06 Score=91.01 Aligned_cols=196 Identities=10% Similarity=0.046 Sum_probs=105.5
Q ss_pred cCCC-CCCchhHHHHHHHH---HHHhcCCC--ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc----CCC
Q 002024 5 TSSS-KGIFESRKSIVKQL---LEALNNEN--VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH----NLS 74 (979)
Q Consensus 5 ~~~~-~~~~vgR~~~l~~l---~~~l~~~~--~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~----~~~ 74 (979)
.|.. ...|+|++..++.+ .+.+..+. .+.+.|+|++|+|||++|+.+++.......| +.+.+.. ...
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMS 114 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccc
Confidence 3444 67899999998774 44444332 2588999999999999999999988622222 2233221 223
Q ss_pred HHHHHHHHHHHh-CCc--------------------c-------cc-cc--hHHH---HHHHHHH-HhcCC----eEEEE
Q 002024 75 IVKIQGEIAAVL-GLT--------------------I-------CG-IE--ESAR---AGYLWER-IKMEK----RILVI 115 (979)
Q Consensus 75 ~~~~~~~i~~~l-~~~--------------------~-------~~-~~--~~~~---~~~~~~~-l~~~~----~~Llv 115 (979)
..+...+.++.. +.. . .+ .. .... ....... ...++ +.+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 333333333321 100 0 00 00 0111 1111111 11233 35999
Q ss_pred EcCCCCccc--hhhhcCCCCCCCCCcEEEEEcCC-----------------hhhhhccCCcceEEcCCCCHHHHHHHHHH
Q 002024 116 LDDVWERID--LQKVGIPLGEDHEGCNILLTSRS-----------------QGVCNQMDAQKIFIVRTLLEEESWILFRE 176 (979)
Q Consensus 116 lDd~~~~~~--~~~l~~~~~~~~~~~~iiiTtr~-----------------~~~~~~~~~~~~~~l~~L~~~e~~~l~~~ 176 (979)
||+++.... ...+...+.. .....++++|.. ..+.. .-..+.+++++.++..+++..
T Consensus 195 IDEi~~l~~~~~~~L~~~le~-~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s---R~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 195 IDEVHMLDIESFSFLNRALES-DMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD---RLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp EESGGGSBHHHHHHHHHHTTC-TTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT---TEEEEEECCCCHHHHHHHHHH
T ss_pred EhhccccChHHHHHHHHHhhC-cCCCeeeeecccceeeeeccCCCCcccCCHHHHh---hccEEEecCCCHHHHHHHHHH
Confidence 999986522 2333222222 222234444431 11222 224589999999999999997
Q ss_pred HhCCCCCCccchHHHHHHHHHcC-CCchHHHHH
Q 002024 177 AAGTVVENSDLNSIAREVAAKCS-GLPIAILTV 208 (979)
Q Consensus 177 ~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~ 208 (979)
.+.... ..-..+....+++.+. |.|..+..+
T Consensus 271 ~~~~~~-~~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 271 RCEEED-VEMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp HHHHTT-CCBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHcC-CCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 774322 2223456788888887 777655543
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.30 E-value=1.3e-06 Score=85.46 Aligned_cols=52 Identities=17% Similarity=0.254 Sum_probs=45.8
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|.....++||+++++++.+.+.....+.+.|+|++|+|||++|+.+++...
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred hccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3556788999999999999999876667789999999999999999999874
No 190
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.28 E-value=2.7e-05 Score=82.46 Aligned_cols=184 Identities=14% Similarity=0.087 Sum_probs=107.2
Q ss_pred CCCCCCchhHHHHHHHHHHHhcC------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 6 SSSKGIFESRKSIVKQLLEALNN------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.....++|.++.++.+.+.+.. ...+.+.|+|++|+|||++|+.++.... . ..+.+.++...
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~--~---~~~~i~~~~l~ 91 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECS--A---TFLNISAASLT 91 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTT--C---EEEEEESTTTS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhC--C---CeEEeeHHHHh
Confidence 44567899999999999887631 2346788999999999999999998764 1 12344443221
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhhc---CCCCC--C
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKVG---IPLGE--D 135 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l~---~~~~~--~ 135 (979)
. ...+ ........+........+.+|++|+++.... ...+. ..+.. .
T Consensus 92 ~--------------~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 156 (297)
T 3b9p_A 92 S--------------KYVG-DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPD 156 (297)
T ss_dssp S--------------SSCS-CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC----
T ss_pred h--------------cccc-hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCC
Confidence 1 0000 1122233333334346778999999965411 00111 11111 1
Q ss_pred CCCcEEEEEcCChhhhhc-c--CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch-HHHHHHH
Q 002024 136 HEGCNILLTSRSQGVCNQ-M--DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI-AILTVGR 210 (979)
Q Consensus 136 ~~~~~iiiTtr~~~~~~~-~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~ 210 (979)
..+..||.||...+.... . +-...+.++..+.++...++...+..... .-..+....+++.+.|++- ++..+..
T Consensus 157 ~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~~ 234 (297)
T 3b9p_A 157 GDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALAK 234 (297)
T ss_dssp --CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 234556667765432110 0 22357888888888888888877643221 1223457889999999875 5555433
No 191
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.27 E-value=1.6e-05 Score=85.37 Aligned_cols=172 Identities=15% Similarity=0.178 Sum_probs=103.9
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+.|-++.+++|.+.+. -...+-|.++||+|+|||.+|++++..... .| +.+..+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~--~f---~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC--KF---IRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--EE---EEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--Cc---eEEEhHHhhc
Confidence 45667788888888776643 123466889999999999999999998762 22 3343332211
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------c------hhhhcCCCC--CCC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------D------LQKVGIPLG--EDH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------~------~~~l~~~~~--~~~ 136 (979)
. ..+ .....+..+.+.-....+++|++|+++... + +..+...+. ...
T Consensus 221 k--------------~vG-ese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 K--------------YIG-EGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp S--------------STT-HHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred c--------------ccc-hHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 0 000 112333444444445788999999997541 0 111111111 123
Q ss_pred CCcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 137 EGCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
.+..||.||...+.. ..-+-...++++.-+.++..++|+.+.....-..+.. ...+++.+.|+
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~ 353 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGC 353 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCC
Confidence 445566677654333 2224468899999999999999988886543322211 57788888885
No 192
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.27 E-value=4.8e-06 Score=93.84 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=88.3
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhcc-----CCCeEEEEEeccCCCHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESK-----RYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~ 80 (979)
+....+++||+++++++.+.+......-+.|+|++|+|||++|+.++....... .-..++.++++
T Consensus 176 ~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 176 EDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp SSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred cCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 345678999999999999999765555678999999999999999999874221 01123333333
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhh-------hc
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVC-------NQ 153 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~-------~~ 153 (979)
...... .......+.+.....++.++++|. ..+....+.. ... ....++|.+|...... ..
T Consensus 246 ---~~~~g~-----~e~~~~~~~~~~~~~~~~iLfiD~--~~~a~~~L~~-~L~-~g~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 246 ---TKYRGE-----FEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKP-SLA-RGELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC----------CC-CTT-SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ---ccccch-----HHHHHHHHHHHHHhcCCeEEEEeC--chhHHHHHHH-hhc-CCCEEEEecCCHHHHHHHhhcCHHH
Confidence 000000 012233444555556788999992 2222222222 222 2244566665544311 00
Q ss_pred cCCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 154 MDAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 154 ~~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
.+.-..+.+++.+.++..+++.....
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11224799999999999999987664
No 193
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.26 E-value=1.8e-05 Score=88.51 Aligned_cols=185 Identities=17% Similarity=0.146 Sum_probs=109.0
Q ss_pred CCCCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 6 SSSKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.....++|.++.++.|.+.+. ....+-|.|+|++|+|||++|+.++..... . ..+.++++.-
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~-~---~~~~v~~~~l- 204 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-S---TFFSISSSDL- 204 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS-S---EEEEECCC---
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC-C---CEEEEeHHHH-
Confidence 3456778999999999988762 123467889999999999999999987621 1 1222322211
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc-------------chhhhcCCCCC---CCC
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI-------------DLQKVGIPLGE---DHE 137 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~-------------~~~~l~~~~~~---~~~ 137 (979)
... ..+.. ......+.+......+.+|+||+++... ....+...+.. ...
T Consensus 205 -----~~~---~~g~~------~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 205 -----VSK---WLGES------EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp ---------------C------CCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred -----Hhh---hcchH------HHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 100 01110 1122333343444678899999998541 01222222222 234
Q ss_pred CcEEEEEcCChhhhhc--c-CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHHHH
Q 002024 138 GCNILLTSRSQGVCNQ--M-DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTVGR 210 (979)
Q Consensus 138 ~~~iiiTtr~~~~~~~--~-~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~ 210 (979)
+..||.||........ . +-...+.++..+.++...++........... .......|++.+.|+ +..|..+..
T Consensus 271 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 271 GILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp SCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 5566667765432210 1 2346788888999999999998875432211 234578899999985 556665544
No 194
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=2.6e-05 Score=86.32 Aligned_cols=149 Identities=19% Similarity=0.161 Sum_probs=106.5
Q ss_pred CCCcCCccEEEccCCcccccC--CcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCE
Q 002024 359 RDTFEDLTGISLMSNYIHEVP--AMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRT 436 (979)
Q Consensus 359 ~~~~~~l~~l~l~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~ 436 (979)
+....+++.+.+.. .++.++ .|.+|++|+.+.+..+ +..+....|..+..|+.+.+.......-..+|..+..+..
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccccc
Confidence 45567788888864 477776 4668999999999754 7788889999999999988877555333456666655544
Q ss_pred EEeCCCCCCCCccccCCcCCcEEEcccCcCcccc-hhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcccC
Q 002024 437 LRLEDCYLGDLSVIGELSNLEILSLCRSSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNT 512 (979)
Q Consensus 437 L~L~~~~l~~l~~i~~L~~L~~L~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~ 512 (979)
..........-..+.++.+|+.+.+..+ +..++ ..|.++.+|+.+.+..+ +..++...+.+...|+.+.+..+
T Consensus 145 ~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 145 TIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp ECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred ccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence 4443332222256888999999999765 44554 46888999999998763 56677666778888887766543
No 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=3.6e-07 Score=86.13 Aligned_cols=93 Identities=17% Similarity=0.246 Sum_probs=43.1
Q ss_pred CccEEEEecCCCceEeechhHHhhccCCCEEEEecccccceeeccccccCCCCccceeeccccccccccCccccccccCC
Q 002024 839 NLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQEIVTDRERSKGASAERIEFPSLFEMELRNLDSLTCFCSGQ 918 (979)
Q Consensus 839 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~ 918 (979)
.|++|++++|. +++..-. .+..+++|++|++++|..++........ .....+++|++|+|++|+++|+-....
T Consensus 62 ~L~~LDLs~~~-Itd~GL~-~L~~~~~L~~L~L~~C~~ItD~gL~~L~-----~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFD-HMEGLQYVEKIRLCKCHYIEDGCLERLS-----QLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CEEEEEEESCC-CCGGGGG-GGTTCSCCCEEEEESCTTCCHHHHHHHH-----TCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred eEeEEeCcCCC-ccHHHHH-HhcCCCCCCEEEeCCCCccCHHHHHHHH-----hcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 45555555554 4432211 1244555555555555544432111000 000013456666666666665532222
Q ss_pred ceeeccccceeeeccCCCcee
Q 002024 919 FLIEFPALEMLTIAECPKIKT 939 (979)
Q Consensus 919 ~~~~~~~L~~L~i~~C~~L~~ 939 (979)
. ..+++|++|++++||+++.
T Consensus 135 L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 L-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp G-GGCTTCCEEEEESCTTCCC
T ss_pred H-hcCCCCCEEECCCCCCCCc
Confidence 2 1356666777777766654
No 196
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.21 E-value=6.3e-06 Score=88.58 Aligned_cols=178 Identities=15% Similarity=0.080 Sum_probs=100.9
Q ss_pred CCCCch-h--HHHHHHHHHHHhcCC--CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHH
Q 002024 8 SKGIFE-S--RKSIVKQLLEALNNE--NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 8 ~~~~~v-g--R~~~l~~l~~~l~~~--~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i 82 (979)
..+.|+ | .......+......+ ....+.|+|++|+|||+||+.+++..... -..++++++. ++...+
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~ 80 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAM 80 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHH
Confidence 455666 4 344445566655543 24678899999999999999999987533 2235566543 223333
Q ss_pred HHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----hhhhcCCCCC-CCCCcEEEEEcCChh--------
Q 002024 83 AAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----LQKVGIPLGE-DHEGCNILLTSRSQG-------- 149 (979)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----~~~l~~~~~~-~~~~~~iiiTtr~~~-------- 149 (979)
...+... ......+... +.-+|++||++.... .+.+...+.. ...+.++|+|+....
T Consensus 81 ~~~~~~~--------~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 81 VEHLKKG--------TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHHHT--------CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHHHcC--------cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhh
Confidence 3332110 0111222222 356889999976431 1222111111 123556777775331
Q ss_pred -hhhccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHH
Q 002024 150 -VCNQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAIL 206 (979)
Q Consensus 150 -~~~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~ 206 (979)
+..++.....+++++ +.++..+++...+....- .-.++....+++.+ |....+.
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~-~l~~~~l~~l~~~~-g~~r~l~ 205 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL-ELRKEVIDYLLENT-KNVREIE 205 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHC-SSHHHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHhC-CCHHHHH
Confidence 122333336799999 999999999887742211 22245678888888 7765433
No 197
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.16 E-value=6.6e-06 Score=100.36 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=89.8
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEeccCCCHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-----YDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~ 80 (979)
|....+++||++++.++.+.+.....+-+.|+|++|+|||++|+.+++....... -..+++++++.-..
T Consensus 166 ~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 166 EGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred cCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 4456789999999999999998665566789999999999999999998743211 22345554422110
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhc-CCeEEEEEcCCCCccc-------hh--hhcCCCCCCCCCcEEEEEcCChhh
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKM-EKRILVILDDVWERID-------LQ--KVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~LlvlDd~~~~~~-------~~--~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
+.... .........+.+.... +++.+|++|+++.... ++ .+..++.. ..+..+|.+|.....
T Consensus 240 ------g~~~~-g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~-~~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ------GAKYR-GEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA-RGELRLIGATTLDEY 311 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH-TTCCCEEEEECHHHH
T ss_pred ------cCccc-hHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh-CCCeEEEEecCchHH
Confidence 00000 1122334445555543 4689999999976421 11 01111111 123345555543321
Q ss_pred -----h-hccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 151 -----C-NQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 151 -----~-~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
. ...+.-..+.+++++.++..+++....
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 1 111222468999999999999987443
No 198
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1.6e-06 Score=81.73 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=17.2
Q ss_pred CccEEEEecCCCceEeechhHHhhccCCCEEEEecccccc
Q 002024 839 NLTTINIQSCSKLVNLFTASIAESLVLLKTLRVISCAAVQ 878 (979)
Q Consensus 839 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~l~ 878 (979)
+|++|+|++|+++++-.... +..+++|++|++++|+.++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~-L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIA-LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHH-GGGCTTCCEEEEESCTTCC
T ss_pred CCCEEEcCCCCcCCHHHHHH-HhcCCCCCEEECCCCCCCC
Confidence 45555555555554432211 2334444444444444443
No 199
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.14 E-value=3.1e-05 Score=84.61 Aligned_cols=172 Identities=14% Similarity=0.181 Sum_probs=102.2
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+.|-++.+++|.+.+. -...+-|.+|||+|+|||.+|++++..... . .+.+..+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~--~---~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA--N---FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--C---EEEEehhhhcc
Confidence 35566788888877776643 123467889999999999999999998762 2 23344332211
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------c------hhhhcCCCC--CCC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------D------LQKVGIPLG--EDH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------~------~~~l~~~~~--~~~ 136 (979)
. ..+ .....+..+........+++|++|+++... + +..+...+. ...
T Consensus 254 k--------------~~G-ese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 318 (437)
T 4b4t_L 254 K--------------YIG-ESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL 318 (437)
T ss_dssp S--------------SSS-HHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT
T ss_pred c--------------cch-HHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC
Confidence 0 000 112233344444445789999999997531 0 111211111 123
Q ss_pred CCcEEEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 137 EGCNILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
.+..||.||...+.... -+-...++++..+.++..++|..+........+.. ...+++.+.|+
T Consensus 319 ~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~ 386 (437)
T 4b4t_L 319 GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGF 386 (437)
T ss_dssp TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSC
T ss_pred CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCC
Confidence 45567777776544321 12346888988888998999988775433222211 56788888885
No 200
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=5.8e-05 Score=82.07 Aligned_cols=172 Identities=13% Similarity=0.157 Sum_probs=103.1
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+.|-++.+++|.+.+. -...+-|.++||+|+|||.+|++++..... . .+.+..+.-.+
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--~---fi~vs~s~L~s 281 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--T---FIRVIGSELVQ 281 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGGCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC--C---eEEEEhHHhhc
Confidence 45578888888888876542 124577889999999999999999998762 2 23333332111
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------------hhhhcCCCC--CCC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------------LQKVGIPLG--EDH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------------~~~l~~~~~--~~~ 136 (979)
...+ .....+..+........+++|++|+++.... +..+...+. ...
T Consensus 282 --------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 --------------KYVG-EGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp --------------CSSS-HHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred --------------ccCC-HHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 0000 1123334444444457889999999875410 111111111 123
Q ss_pred CCcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 137 EGCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
.+..||.||...+.. ..-+-...++++..+.++..++|+.+.....-..+.. ...|++.+.|+
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~Gf 414 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNS 414 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCC
Confidence 344566677654333 2123457899999999999999988886443222211 56788888886
No 201
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.9e-05 Score=84.85 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=104.8
Q ss_pred CCCCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 6 SSSKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
+.....+.|-++.+++|.+.+. -...+-|.+|||+|+|||.+|++++..... . .+.++.+.-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~--~---f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA--T---FLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--E---EEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--C---EEEEehhhh
Confidence 3456778888888888877642 123567889999999999999999998762 2 233333321
Q ss_pred CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCC--
Q 002024 73 LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGE-- 134 (979)
Q Consensus 73 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~-- 134 (979)
.+ ...+ .....+..+........+++|++|+++... . +..+...+..
T Consensus 252 ~~--------------~~vG-ese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 252 VQ--------------MYIG-EGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp CS--------------SCSS-HHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred hh--------------cccc-hHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 11 0000 112233333333334678999999986320 0 1112111111
Q ss_pred CCCCcEEEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHH
Q 002024 135 DHEGCNILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTV 208 (979)
Q Consensus 135 ~~~~~~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 208 (979)
...+..||.||...+.... -+-...++++..+.++..++|..+........+.. ...+++.+.|+ +.-|..+
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~sGADi~~l 394 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFNGAQLKAV 394 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCCHHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCCHHHHHHH
Confidence 2234456667766544321 13357899999999999999987764322211111 56788888875 3334433
No 202
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=8.4e-05 Score=79.96 Aligned_cols=172 Identities=13% Similarity=0.159 Sum_probs=100.4
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+.|-++.+++|.+.+. -...+-|.++||+|+|||.+|+++|..... .| +.++.+.-.+
T Consensus 180 ~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~--~f---i~v~~s~l~s 254 (437)
T 4b4t_I 180 SYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA--TF---LRIVGSELIQ 254 (437)
T ss_dssp CGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC--EE---EEEESGGGCC
T ss_pred cceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC--CE---EEEEHHHhhh
Confidence 45566677877777766542 123467889999999999999999998762 22 2333322110
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCC--CCC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLG--EDH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~--~~~ 136 (979)
...+ .....+..+.+......+++|++|+++... . +..+...+. ...
T Consensus 255 --------------k~vG-esek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 255 --------------KYLG-DGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp --------------SSSS-HHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred --------------ccCc-hHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 0000 112333444444445778999999987431 0 111111111 123
Q ss_pred CCcEEEEEcCChhhhhc--c---CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 137 EGCNILLTSRSQGVCNQ--M---DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
.+..||.||...+.... . +-...++++.-+.++..++|..+.....-..+. ....+++.+.|+
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~Gf 387 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDL 387 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCC
Confidence 34556667765544321 1 234678898889999999998888644322211 156788888875
No 203
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.03 E-value=4.8e-06 Score=90.04 Aligned_cols=137 Identities=18% Similarity=0.168 Sum_probs=64.7
Q ss_pred hhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC--cccc--CCcCCcEEEcccC--c------Ccccc
Q 002024 403 KFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVIG--ELSNLEILSLCRS--S------IKEIP 470 (979)
Q Consensus 403 ~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i~--~L~~L~~L~Ls~~--~------l~~lp 470 (979)
.++..+++|+.|+|+++....++. +. +++|+.|+|..|.+..- ..+. .+++|++|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345566667777776642223333 32 66677777766654322 2222 5667777766421 1 11221
Q ss_pred hhh--ccCccccEEecCCCCCccccCcchh--ccCcCCcEEEcccCccccccccccchhccccccccceecccccC
Q 002024 471 ETF--CRLSHLWLLDLDHCRQLALIPHGVI--SQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 471 ~~i--~~L~~L~~L~l~~c~~~~~~p~~~l--~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
..+ ..+++|++|++.+|......+..+. ..+++|++|+++.|...... ..+....+..+++|+.|+++.+.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G-~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG-ARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH-HHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH-HHHHHhhcccCCcceEEECCCCc
Confidence 112 2456677777766543322221111 24566667776655332100 01112233455666666665443
No 204
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.02 E-value=5.4e-05 Score=91.48 Aligned_cols=159 Identities=14% Similarity=0.148 Sum_probs=95.7
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCe-EEEEEeccCCCHHHHHH
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR----YDT-VVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~----f~~-~~~~~~~~~~~~~~~~~ 80 (979)
+....+++||+++++++.+.+......-+.|+|++|+|||++|+.++........ .+. ++.++...-.
T Consensus 182 ~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~------- 254 (758)
T 1r6b_X 182 VGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLL------- 254 (758)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC----------
T ss_pred cCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHh-------
Confidence 3456789999999999999998766677889999999999999999988643211 122 2222211110
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--------c--hhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--------D--LQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--------~--~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
.+... ..........+.+.+...++.+|++|+++... . ...+...+.. ..+.++|.+|...+.
T Consensus 255 -----~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 255 -----AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEF 327 (758)
T ss_dssp -----CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHH
T ss_pred -----ccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHH
Confidence 00011 11123344555555655667999999997651 1 1222223332 234556666654332
Q ss_pred hh-------ccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 151 CN-------QMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 151 ~~-------~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
.. ....-..+.+++.+.++..+++....
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 11 01122468999999999998887544
No 205
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=2.4e-05 Score=82.25 Aligned_cols=147 Identities=18% Similarity=0.115 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhc-cCCCeEEEEEecc-CCCHHHHHHHHHHHhCCccc
Q 002024 14 SRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQES-KRYDTVVMAVVSH-NLSIVKIQGEIAAVLGLTIC 91 (979)
Q Consensus 14 gR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~-~~f~~~~~~~~~~-~~~~~~~~~~i~~~l~~~~~ 91 (979)
|.++.++.|...+..+..+...++|+.|+|||++|+.+++..... .....+.++..+. ..++.+ .+++.+.+...+.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~-ir~li~~~~~~p~ 79 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDD-IRTIKDFLNYSPE 79 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHH-HHHHHHHHTSCCS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHH-HHHHHHHHhhccc
Confidence 556777888888876667788999999999999999999853211 1122344554432 223322 2334444332211
Q ss_pred ccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--chhhhcCCCCCCCCCcEEEEEcCCh-hhhhccCCcceEEcCCCCHH
Q 002024 92 GIEESARAGYLWERIKMEKRILVILDDVWERI--DLQKVGIPLGEDHEGCNILLTSRSQ-GVCNQMDAQKIFIVRTLLEE 168 (979)
Q Consensus 92 ~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--~~~~l~~~~~~~~~~~~iiiTtr~~-~~~~~~~~~~~~~l~~L~~~ 168 (979)
.+++-++|+|+++... ..+.+...+-.......+|++|.+. .+...+.+. .+++.+++.+
T Consensus 80 ----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~ 142 (305)
T 2gno_A 80 ----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPK 142 (305)
T ss_dssp ----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCH
T ss_pred ----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHH
Confidence 2567889999998652 2333333332233456666655443 343333334 9999999999
Q ss_pred HHHHHHHHHh
Q 002024 169 ESWILFREAA 178 (979)
Q Consensus 169 e~~~l~~~~~ 178 (979)
+..+.+.+..
T Consensus 143 ~i~~~L~~~~ 152 (305)
T 2gno_A 143 EFRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998877
No 206
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.99 E-value=9.9e-05 Score=82.92 Aligned_cols=178 Identities=11% Similarity=0.103 Sum_probs=104.1
Q ss_pred CCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 9 KGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
...++|.+..+++|.+.+. ....+-|.|+|++|+|||++|+.+++... . ..+.+++..
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~--~---~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--A---FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCS--S---EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhC--C---CEEEEEchH----
Confidence 4568999999999988764 13345688999999999999999988763 2 233444321
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhhcCCCC--CCCCCcE
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKVGIPLG--EDHEGCN 140 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l~~~~~--~~~~~~~ 140 (979)
+...+. + ........+.+....+.+.+|+||+++.... ...+...+. ....+.+
T Consensus 274 ------l~~~~~----g-~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 274 ------IMSKLA----G-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ------HHTSCT----T-HHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ------hhhhhc----c-hhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111111 0 1112223333334446788999999842210 111111111 1233456
Q ss_pred EEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHHH
Q 002024 141 ILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILTV 208 (979)
Q Consensus 141 iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~ 208 (979)
||.||...... ...+....+.++..+.++..+++..++.......+ .....+++.+.|+ +..+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 66666654321 11123457999999999999999988854332211 1246688888875 5555544
No 207
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=6.8e-05 Score=81.83 Aligned_cols=172 Identities=12% Similarity=0.147 Sum_probs=96.6
Q ss_pred CCCCchhHHHHHHHHHHHhc-------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALN-------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~-------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....+.|-++.+++|.+.+. -...+-|.++||+|+|||.+|+++|+.... . .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~--~---~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA--A---FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC--E---EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C---eEEEecchhhc
Confidence 45567788888888776653 123466889999999999999999998762 2 23344332211
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCC--CCC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLG--EDH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~--~~~ 136 (979)
. ..+ .....+..+.+......+.++++|+++... . +..+...+. ...
T Consensus 245 ~--------------~~G-e~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~ 309 (428)
T 4b4t_K 245 K--------------YLG-EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309 (428)
T ss_dssp S--------------SCS-HHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred c--------------ccc-hhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC
Confidence 0 000 112333444444445778999999985320 0 111111111 123
Q ss_pred CCcEEEEEcCChhhh-----hccCCcceEEcCCCC-HHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 137 EGCNILLTSRSQGVC-----NQMDAQKIFIVRTLL-EEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~-~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
.+..||.||...+.. ...+-...++++.+. .++...+|..+.....-.++. ....+++.+.|+
T Consensus 310 ~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~ 378 (428)
T 4b4t_K 310 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSL 378 (428)
T ss_dssp CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTC
T ss_pred CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCC
Confidence 455666777654332 212334678887664 555566777666433221111 156788888875
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.94 E-value=2.8e-06 Score=78.86 Aligned_cols=46 Identities=22% Similarity=0.224 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 11 IFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.++|+...+.++.+.+. .....-|.|+|++|+|||++|+.+++...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 57899999999988774 12224577999999999999999987653
No 209
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.94 E-value=3.9e-05 Score=92.51 Aligned_cols=151 Identities=16% Similarity=0.132 Sum_probs=88.3
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccC-----CCeEEEEEeccCCCHHHHHHH
Q 002024 7 SSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKR-----YDTVVMAVVSHNLSIVKIQGE 81 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 81 (979)
....+++||+++++++...+......-+.++|++|+|||++|+.+++....... -..++.+++
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------ 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc------------
Confidence 346789999999999999997655566789999999999999999998642110 111222222
Q ss_pred HHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhhh-------cc
Q 002024 82 IAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVCN-------QM 154 (979)
Q Consensus 82 i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~~-------~~ 154 (979)
+....+ ........+.+......+.+|++|. .......+.. ... ....++|.+|....... ..
T Consensus 245 -----g~~~~G-~~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~-~l~-~~~v~~I~at~~~~~~~~~~~d~al~ 314 (758)
T 3pxi_A 245 -----GTKYRG-EFEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKP-SLA-RGELQCIGATTLDEYRKYIEKDAALE 314 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEECC----------CC-CTT-SSSCEEEEECCTTTTHHHHTTCSHHH
T ss_pred -----cccccc-hHHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHH-HHh-cCCEEEEeCCChHHHHHHhhccHHHH
Confidence 111010 0112234444555557788999992 2222222222 222 23456666666544210 00
Q ss_pred CCcceEEcCCCCHHHHHHHHHHHhC
Q 002024 155 DAQKIFIVRTLLEEESWILFREAAG 179 (979)
Q Consensus 155 ~~~~~~~l~~L~~~e~~~l~~~~~~ 179 (979)
+.-..+.+++.+.++..+++.....
T Consensus 315 rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 315 RRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 1125799999999999999987654
No 210
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=0.0002 Score=73.80 Aligned_cols=182 Identities=15% Similarity=0.156 Sum_probs=102.9
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN---N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~---~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
++.....++|.++.++++.+.+. . ...+-+.|+|++|+|||++|+.++.... .. .+.++...-
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~--~~---~~~i~~~~~ 81 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK--VP---FFTISGSDF 81 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT--CC---EEEECSCSS
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--CC---EEEEeHHHH
Confidence 34466788999988888766542 1 1134588999999999999999998764 22 233333221
Q ss_pred CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------------hhhhcCCCC--C
Q 002024 73 LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------------LQKVGIPLG--E 134 (979)
Q Consensus 73 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------------~~~l~~~~~--~ 134 (979)
.+. ..+ ........+.+......+.++++|+++.... ...+...+. .
T Consensus 82 ~~~--------------~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (257)
T 1lv7_A 82 VEM--------------FVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE 146 (257)
T ss_dssp TTS--------------CCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHH--------------hhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc
Confidence 110 001 1122334444444446678999999843210 111111111 1
Q ss_pred CCCCcEEEEEcCChhhh-hcc----CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCC-CchHHHHH
Q 002024 135 DHEGCNILLTSRSQGVC-NQM----DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSG-LPIAILTV 208 (979)
Q Consensus 135 ~~~~~~iiiTtr~~~~~-~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~ 208 (979)
...+..||.||...+.. ... +-...+.++..+.++..+++........-.++ .....+++.+.| .+.-|..+
T Consensus 147 ~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~dl~~l 224 (257)
T 1lv7_A 147 GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGADLANL 224 (257)
T ss_dssp SSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred cCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHHHHHHH
Confidence 23345667777654322 111 22467888888999988888877754321111 114557777888 66665544
No 211
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.86 E-value=0.0002 Score=79.59 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=101.3
Q ss_pred CCCCchhHHHHHHHHHHHhc---CC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 8 SKGIFESRKSIVKQLLEALN---NE---------NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~---~~---------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
....++|.++.++++.+... .. ..+-|.|+|++|+|||+||+.++.... .. .+.++++.....
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~--~~---f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEAN--VP---FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHT--CC---EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC---eeeCCHHHHHHH
Confidence 45678999998888776542 11 124588999999999999999998764 22 234444332211
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------------chhhhcCCCC--CCCC
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------------DLQKVGIPLG--EDHE 137 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------------~~~~l~~~~~--~~~~ 137 (979)
+ .+. ....+..+......+.+.+|+||+++... .+..+...+. ....
T Consensus 89 ----------~----~g~-~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ----------F----VGV-GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ----------C----TTH-HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ----------H----hcc-cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 000 11223334444444678999999996531 1122211111 1123
Q ss_pred CcEEEEEcCChhhhh--cc---CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 138 GCNILLTSRSQGVCN--QM---DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 138 ~~~iiiTtr~~~~~~--~~---~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
+..||.||...+... .. +-...+.++..+.++-.+++..+.....-.++. ....+++.+.|+.
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 556777776654332 11 233588999999888888888777543222111 1455888898876
No 212
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.85 E-value=4.8e-05 Score=81.16 Aligned_cols=106 Identities=14% Similarity=0.246 Sum_probs=63.7
Q ss_pred CCchhHHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 10 GIFESRKSIVKQLLEALNNE---------NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~~---------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
..++|++..++.+...+... ....+.|+|++|+|||++|+.++..... .-..++.++++.......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~--~~~~~~~~~~~~~~~~~~--- 91 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD--TEEAMIRIDMTEYMEKHA--- 91 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS--CGGGEEEEEGGGCCSTTH---
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC--CCcceEEeeccccccccc---
Confidence 45789999999888777531 1357899999999999999999997742 122345666654433221
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
..+.++........ .....+.+.+.....-++++|+++..
T Consensus 92 -~~~l~g~~~~~~~~-~~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 92 -VSRLIGAPPGYVGY-EEGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp -HHHHHCCCTTSTTT-TTCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HHHhcCCCCccccc-cccchHHHHHHhCCCeEEEEeChhhc
Confidence 11122322111111 00122334444456679999999765
No 213
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.79 E-value=1.1e-05 Score=84.08 Aligned_cols=176 Identities=16% Similarity=0.152 Sum_probs=95.2
Q ss_pred CCCCCCchhHHHHHHHHHHHhc------------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 6 SSSKGIFESRKSIVKQLLEALN------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.....++|.++.++++.+.+. ....+-+.|+|++|+|||++|+.+++.... .|- .+.++.-.
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~~---~v~~~~~~ 81 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PFF---SMGGSSFI 81 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CCC---CCCSCTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CEE---EechHHHH
Confidence 4456778999988888877654 011234779999999999999999987652 221 11111110
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc-----------------chhhhcCCCCC--
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI-----------------DLQKVGIPLGE-- 134 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~-----------------~~~~l~~~~~~-- 134 (979)
+. ..+.... ....+.+......+.+|++||++... .+..+...+..
T Consensus 82 ~~---------~~~~~~~------~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 146 (268)
T 2r62_A 82 EM---------FVGLGAS------RVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFG 146 (268)
T ss_dssp TS---------CSSSCSS------SSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSS
T ss_pred Hh---------hcchHHH------HHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcc
Confidence 00 0010000 01112222223466799999996531 12222222211
Q ss_pred -CCCCcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCch
Q 002024 135 -DHEGCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPI 203 (979)
Q Consensus 135 -~~~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl 203 (979)
......||.||...... ...+....+.++..+.++..+++...........+. ....+++.+.|+|-
T Consensus 147 ~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~g 219 (268)
T 2r62_A 147 SENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLAG 219 (268)
T ss_dssp CSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSCH
T ss_pred cCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCCH
Confidence 11224566677655322 111223568899999999999998877533211111 12346666777654
No 214
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.79 E-value=2.8e-05 Score=75.30 Aligned_cols=125 Identities=16% Similarity=0.139 Sum_probs=69.3
Q ss_pred CCCCCch----hHHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 7 SSKGIFE----SRKSIVKQLLEALNN---ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 7 ~~~~~~v----gR~~~l~~l~~~l~~---~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
...+.|+ ++++.++.+.++..+ ...+.++|+|++|+||||||+.++........+ .+++++ ..++.
T Consensus 7 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~~------~~~~~ 79 (180)
T 3ec2_A 7 ANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFFD------TKDLI 79 (180)
T ss_dssp CCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEEE------HHHHH
T ss_pred CccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEEE------HHHHH
Confidence 3444555 466667777766643 234789999999999999999999987532222 233443 34444
Q ss_pred HHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc--cchh--hhcCCCCC-CCCCcEEEEEcCCh
Q 002024 80 GEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER--IDLQ--KVGIPLGE-DHEGCNILLTSRSQ 148 (979)
Q Consensus 80 ~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~--~~~~--~l~~~~~~-~~~~~~iiiTtr~~ 148 (979)
..+...+..... . ...+.+. +.-++|+||++.. ..+. .+...+.. ...|..+|+||...
T Consensus 80 ~~~~~~~~~~~~--~------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 80 FRLKHLMDEGKD--T------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHHHTCC--S------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHhcCchH--H------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 444443321110 0 2223332 4568899999732 2221 11111111 12466788888754
No 215
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.77 E-value=9.3e-05 Score=78.86 Aligned_cols=48 Identities=25% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCCchhHHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 9 KGIFESRKSIVKQLLEALNN--------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~--------------~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...++|+++.++.+...+.. .....+.|+|++|+|||++|+.+++...
T Consensus 14 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 14 DQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999998877643 2235678999999999999999998774
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.76 E-value=0.00045 Score=74.08 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=99.5
Q ss_pred cccCCCCCCchhHHHHHHHHHHHhcC-----CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHH
Q 002024 3 IITSSSKGIFESRKSIVKQLLEALNN-----ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVK 77 (979)
Q Consensus 3 ~~~~~~~~~~vgR~~~l~~l~~~l~~-----~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~ 77 (979)
.+.|.....++|++..++.+...+.. .....++|+|++|+||||||+.++...... + ......-.....+
T Consensus 18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~~~sg~~~~~~~~ 92 (334)
T 1in4_A 18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---HVTSGPVLVKQGD 92 (334)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---EEEETTTCCSHHH
T ss_pred HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEechHhcCHHH
Confidence 35666778899999888888766642 233678999999999999999999887421 1 1111110111111
Q ss_pred HHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhc---CCCC------CC---------CC
Q 002024 78 IQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVG---IPLG------ED---------HE 137 (979)
Q Consensus 78 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~---~~~~------~~---------~~ 137 (979)
...+...+ .++-++++|+++.... .+.+. .... .. .+
T Consensus 93 ---------------------l~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 93 ---------------------MAAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp ---------------------HHHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C
T ss_pred ---------------------HHHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 11111111 2344677888764321 11111 0000 00 01
Q ss_pred CcEEE-EEcCChhhhhcc--CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCchHHHHH
Q 002024 138 GCNIL-LTSRSQGVCNQM--DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLPIAILTV 208 (979)
Q Consensus 138 ~~~ii-iTtr~~~~~~~~--~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~ 208 (979)
...++ .|++...+...+ +....+.+++.+.++..+++.+.+.... ..-..+.+..|++.+.|.|..+.-+
T Consensus 150 ~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHH
Confidence 11222 344443332111 1234688999999999999988763221 2233467899999999999765433
No 217
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.75 E-value=2.4e-05 Score=84.57 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=25.2
Q ss_pred CcCCcEEEcccCcCcc-cchhh---ccCccccEEecCCCCCccc-----cCcchhccCcCCcEEEcccC
Q 002024 453 LSNLEILSLCRSSIKE-IPETF---CRLSHLWLLDLDHCRQLAL-----IPHGVISQLDKLEEFYMWNT 512 (979)
Q Consensus 453 L~~L~~L~Ls~~~l~~-lp~~i---~~L~~L~~L~l~~c~~~~~-----~p~~~l~~L~~L~~L~l~~~ 512 (979)
+++|++|+|++|.+.. .+..+ ..+++|++|+++.|. +.. ++.. +..+++|+.|++++|
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-VDKIKHLKFINMKYN 317 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-HHHHTTCSEEECCSB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-cccCCcceEEECCCC
Confidence 4555555555554431 11111 234555555555433 222 1222 234555555555554
No 218
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.63 E-value=0.0022 Score=70.64 Aligned_cols=110 Identities=16% Similarity=0.185 Sum_probs=55.1
Q ss_pred ccChhhhcCCC-CccEEEecCCcCCCCCcCccCCcCCCEEEeCCCC---CCCC--ccccCCcCCcEEEcccCcCcccc-h
Q 002024 399 VIPDKFFQGMK-DLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCY---LGDL--SVIGELSNLEILSLCRSSIKEIP-E 471 (979)
Q Consensus 399 ~~~~~~~~~l~-~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~---l~~l--~~i~~L~~L~~L~Ls~~~l~~lp-~ 471 (979)
.+...+|..++ .|+.+.+...+...-..+|..+.+|+.+.+..+. ++.+ ..|.++.+|+.+.+..+ +..++ .
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~ 131 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPDTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSE 131 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECTTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTT
T ss_pred EcCHhhccCCCCcCEEEEECCCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhh
Confidence 34444455543 3555555544332223455555555555555432 2322 23445555555555442 34443 2
Q ss_pred hhccCccccEEecCCCCCccccCcchhccCcCCcEEEccc
Q 002024 472 TFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWN 511 (979)
Q Consensus 472 ~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~ 511 (979)
.+..+.+|+.+.+.. .+..++...+....+|+.+.+..
T Consensus 132 aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 132 AFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT
T ss_pred hhhhhcccccccccc--eeeeecccceecccccccccccc
Confidence 455666666666654 23445555456666666666543
No 219
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.62 E-value=0.00018 Score=70.99 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=43.1
Q ss_pred CCCCCCchh----HHHHHHHHHHHhcCC----CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 6 SSSKGIFES----RKSIVKQLLEALNNE----NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 6 ~~~~~~~vg----R~~~l~~l~~~l~~~----~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
+...+.|++ +.+.++.+.+++... ..+.+.|+|++|+|||+||+.+++.... ....++++++.
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~--~~~~~~~~~~~ 91 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK--RNVSSLIVYVP 91 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT--TTCCEEEEEHH
T ss_pred cCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEEhH
Confidence 345666775 444556666666532 1167889999999999999999998763 23456676553
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.58 E-value=0.00015 Score=76.41 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 10 GIFESRKSIVKQLLEALNN--ENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~--~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
+.++|+...+.++.+.+.. .....|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 3578999999988877652 223467799999999999999998865
No 221
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.58 E-value=5.1e-05 Score=78.71 Aligned_cols=63 Identities=13% Similarity=0.073 Sum_probs=40.4
Q ss_pred CCCCchhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 8 SKGIFESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
....++|++..+.++.+.+. ......|.|+|++|+|||++|+.+++..... -...+.++++..
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 34568999999988876654 1223567799999999999999998865421 123456666654
No 222
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.56 E-value=5e-05 Score=73.72 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=9.1
Q ss_pred CCCCceEEEccCC-CCc
Q 002024 383 ECPKLQVLLLQEN-SPL 398 (979)
Q Consensus 383 ~~~~L~~L~L~~~-~~~ 398 (979)
..+.|+.|+|++| .+.
T Consensus 34 ~~~~L~~L~L~~n~~i~ 50 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIP 50 (185)
T ss_dssp TCTTCCEEECTTCTTCC
T ss_pred cCCCCCEEEecCCCCCC
Confidence 3455666666665 544
No 223
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.55 E-value=8.5e-05 Score=89.55 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=83.8
Q ss_pred CCchhHHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 10 GIFESRKSIVKQLLEALNN---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.+++... ......+.++++.-.......
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~--~~~~~~i~i~~s~~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIF--GDEESMIRIDMSEYMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHH--SCTTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCcceEEEechhcccccccc-
Confidence 4578999999888877651 1123688999999999999999999874 222335566655432110000
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc--hhhhcCCC-----CC------CCCCcEEEEEcCC
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID--LQKVGIPL-----GE------DHEGCNILLTSRS 147 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~--~~~l~~~~-----~~------~~~~~~iiiTtr~ 147 (979)
...+.+.+.....-+|+||+++.... ...+...+ .. .....+||.||..
T Consensus 568 ------------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 568 ------------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ------------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 11111222234555889999976522 12211111 00 1235578888873
Q ss_pred -----------------hhhhhccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 148 -----------------QGVCNQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 148 -----------------~~~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
+++..+ -...+.+.+++.++..+++....
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 111222 23589999999999888876544
No 224
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=1.8e-05 Score=80.71 Aligned_cols=60 Identities=23% Similarity=0.213 Sum_probs=27.6
Q ss_pred CCCccEEEecC-CcCC--CCCcCccCCcCCCEEEeCCCCCCCCccccCCc--CCcEEEcccCcCc
Q 002024 408 MKDLKVLDLSY-ILPL--SLPPSLSFLVDLRTLRLEDCYLGDLSVIGELS--NLEILSLCRSSIK 467 (979)
Q Consensus 408 l~~L~~L~L~~-~~~~--~~p~~~~~l~~L~~L~L~~~~l~~l~~i~~L~--~L~~L~Ls~~~l~ 467 (979)
+++|++|+|++ .+.. .+|..+..+++|++|+|++|.++.+..+..+. +|++|+|++|.+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 44455555554 2221 22333445555555555555555443333333 5555555555443
No 225
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.49 E-value=0.0016 Score=67.87 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=97.8
Q ss_pred CCCCCCchhHHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 6 SSSKGIFESRKSIVKQLLEALN---N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~---~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.....++|.++.++++.+... . .-.+-+.|+|++|+|||||++.++.... ...+.+...
T Consensus 36 ~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~--- 107 (278)
T 1iy2_A 36 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS--- 107 (278)
T ss_dssp CCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH---
Confidence 3456678888888777665432 1 0012388999999999999999998764 122333321
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCCC--
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGED-- 135 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~~-- 135 (979)
.+ ..... ......+..+.+......+.++|+||++... . +..+...+...
T Consensus 108 ---~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~ 175 (278)
T 1iy2_A 108 ---DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 175 (278)
T ss_dssp ---HH----HHSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT
T ss_pred ---HH----HHHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC
Confidence 11 11000 0011223344444443567899999985320 0 11221112111
Q ss_pred CCCcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHH
Q 002024 136 HEGCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAIL 206 (979)
Q Consensus 136 ~~~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~ 206 (979)
.....++.+|...+.. ........++++..+.++-.+++...+....-..+ .....+++.+.|+. ..|.
T Consensus 176 ~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 176 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHHHHH
T ss_pred CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc--cCHHHHHHHcCCCCHHHHH
Confidence 1223445566655443 11234568999999999999999877643221111 12456788887765 4444
No 226
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.48 E-value=0.003 Score=69.65 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=14.9
Q ss_pred CCCccEEeeeccCCcccccchhHHHhhccCceEee
Q 002024 688 FNKLKRLDVKWCQNILNIAPIHLLRRLKNLEYCSV 722 (979)
Q Consensus 688 ~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 722 (979)
+.+|+.+.|.. .++.+. ..++.++.+|+.+.+
T Consensus 310 c~~L~~i~lp~--~v~~I~-~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 310 CISLKSIDIPE--GITQIL-DDAFAGCEQLERIAI 341 (394)
T ss_dssp CTTCCEEECCT--TCCEEC-TTTTTTCTTCCEEEE
T ss_pred CCCcCEEEeCC--cccEeh-HhHhhCCCCCCEEEE
Confidence 34555555543 233332 233455556666555
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.46 E-value=0.00063 Score=76.37 Aligned_cols=48 Identities=19% Similarity=0.199 Sum_probs=37.8
Q ss_pred CCCchhHHHHHHHHHHHhc---CC--CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 9 KGIFESRKSIVKQLLEALN---NE--NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~---~~--~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...++|+++.++.+..++. .+ ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 4789999999887655443 22 235688999999999999999998864
No 228
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.45 E-value=0.00014 Score=74.16 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=53.5
Q ss_pred cCCcCCCEEEeCCCCCCCCccc----cCCcCCcEEEcccCcCcccchhhccCc--cccEEecCCCCCccccCc------c
Q 002024 429 SFLVDLRTLRLEDCYLGDLSVI----GELSNLEILSLCRSSIKEIPETFCRLS--HLWLLDLDHCRQLALIPH------G 496 (979)
Q Consensus 429 ~~l~~L~~L~L~~~~l~~l~~i----~~L~~L~~L~Ls~~~l~~lp~~i~~L~--~L~~L~l~~c~~~~~~p~------~ 496 (979)
..+++|+.|+|++|.++.++.+ ..+++|++|+|++|.+..+ ..+..++ +|++|++.+|.....+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 4577888888888888776433 4788888888888887766 3344454 788888888764444442 2
Q ss_pred hhccCcCCcEEE
Q 002024 497 VISQLDKLEEFY 508 (979)
Q Consensus 497 ~l~~L~~L~~L~ 508 (979)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 355666666665
No 229
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.44 E-value=0.00033 Score=82.53 Aligned_cols=176 Identities=11% Similarity=0.119 Sum_probs=100.3
Q ss_pred CCchhHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHH
Q 002024 10 GIFESRKSIVKQLLEALN----N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIV 76 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~----~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 76 (979)
..+.|-++.+++|.+.+. . ...+-|.++||+|+|||+||++++.+... + .+.++++.
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~--~---~~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--E---EEEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--e---EEEEEhHH-----
Confidence 445566666666665542 1 23467889999999999999999987652 1 23443321
Q ss_pred HHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc--------c-----hhhhcCCCC--CCCCCcEE
Q 002024 77 KIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI--------D-----LQKVGIPLG--EDHEGCNI 141 (979)
Q Consensus 77 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~--------~-----~~~l~~~~~--~~~~~~~i 141 (979)
+... ..+ .....+..+.+.-....+.+|+||+++... + ...+...+. ....+..|
T Consensus 274 -----l~sk----~~g-ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 274 -----IMSK----LAG-ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp -----HHSS----CTT-HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred -----hhcc----cch-HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 1110 000 112334444454455788999999986531 0 111111111 11234456
Q ss_pred EEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC-chHHHH
Q 002024 142 LLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL-PIAILT 207 (979)
Q Consensus 142 iiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~ 207 (979)
|.||...+.. ...+-.+.++++..+.++-.++++.+........+. ....+++++.|+ +.-|..
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~GfsgaDL~~ 413 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVGADLAA 413 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCHHHHHH
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCHHHHHH
Confidence 6666654332 111335789999999999999998877543322211 156788898886 333443
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.43 E-value=0.0034 Score=64.30 Aligned_cols=174 Identities=16% Similarity=0.140 Sum_probs=94.6
Q ss_pred CCCCCchhHHHHHHHHHHHhc---C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 7 SSKGIFESRKSIVKQLLEALN---N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l~---~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
.....++|.++.+.++.+... . .-.+-+.|+|++|+|||||++.++.... . ..+.+...
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~---~~i~~~~~---- 83 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGS---- 83 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEHH----
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC--C---CEEEeeHH----
Confidence 345678888877766654432 1 0012388999999999999999998764 1 12333221
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCC--CC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGE--DH 136 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~--~~ 136 (979)
.+ ..... ......+..+.+......+.++++||++... . ...+...+.. ..
T Consensus 84 --~~----~~~~~-----~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 --DF----VEMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp --HH----HHSCT-----THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred --HH----HHHHh-----hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 11 11000 0011223444454433457899999985321 0 1122111111 12
Q ss_pred CCcEEEEEcCChhhhh-----ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 137 EGCNILLTSRSQGVCN-----QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
....++.||...+... ..+....+.++..+.++-.+++...+....-..+ .....+++.+.|+-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCCC
Confidence 2334555666554432 1134568899999999999998877643221111 11456788887754
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.41 E-value=0.0015 Score=73.06 Aligned_cols=179 Identities=16% Similarity=0.155 Sum_probs=98.5
Q ss_pred CCCCCCchhHHHHHHHHHHHhc---CC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 6 SSSKGIFESRKSIVKQLLEALN---NE---------NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~---~~---------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
+.....++|.++.+.++.+... .. -.+-|.|+|++|+|||+||+.++.... . ..+.++.+.-.
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~--~---~~i~i~g~~~~ 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASGSDFV 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT--C---CEEEEEGGGGT
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC--C---CEEEEehhHHH
Confidence 3456778999988887766542 11 123488999999999999999998764 1 23444443211
Q ss_pred CHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc------------c----hhhhcCCCCC--C
Q 002024 74 SIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI------------D----LQKVGIPLGE--D 135 (979)
Q Consensus 74 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~------------~----~~~l~~~~~~--~ 135 (979)
.. ..+ .....+..+.+......+.++++|+++... + +..+...+.. .
T Consensus 102 ~~--------------~~g-~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 102 EM--------------FVG-VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp SS--------------CTT-HHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred Hh--------------hhh-hHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 10 000 001111122221112345799999986431 0 1122211111 1
Q ss_pred CCCcEEEEEcCChhhhh-----ccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc-hHHH
Q 002024 136 HEGCNILLTSRSQGVCN-----QMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP-IAIL 206 (979)
Q Consensus 136 ~~~~~iiiTtr~~~~~~-----~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P-lal~ 206 (979)
.....++.+|...+... .......+.++..+.++-.+++..++....-.++ .....+++.+.|+. ..|.
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~gadL~ 241 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFVGADLE 241 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCCHHHHH
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCCHHHHH
Confidence 23445666676665432 1123468999999999999999877643221111 12456788888865 3443
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.41 E-value=0.003 Score=65.19 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=85.7
Q ss_pred cCCCCCCchhHHHHHHHHHHHhc----C---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 5 TSSSKGIFESRKSIVKQLLEALN----N---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~----~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
|......+.|-++..++|.+.+. . .-.+-+.|+|++|+|||+||+.++..... ..+.+....
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~ 79 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPE 79 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTT
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHH
Confidence 33456678888888888876532 0 11122889999999999999999987642 233443322
Q ss_pred CCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhhcCCCC--CCC
Q 002024 72 NLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKVGIPLG--EDH 136 (979)
Q Consensus 72 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l~~~~~--~~~ 136 (979)
-.+.. . ......+..+.+......+.++++|+++.... ...+...+. ...
T Consensus 80 l~~~~--------------~-~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~ 144 (274)
T 2x8a_A 80 LLNMY--------------V-GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEAR 144 (274)
T ss_dssp TCSST--------------T-HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCST
T ss_pred HHhhh--------------h-hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccccc
Confidence 11100 0 00112233444443335678999999875310 011111111 112
Q ss_pred CCcEEEEEcCChhhhhc-----cCCcceEEcCCCCHHHHHHHHHHHhCC
Q 002024 137 EGCNILLTSRSQGVCNQ-----MDAQKIFIVRTLLEEESWILFREAAGT 180 (979)
Q Consensus 137 ~~~~iiiTtr~~~~~~~-----~~~~~~~~l~~L~~~e~~~l~~~~~~~ 180 (979)
....++.+|...++... .+-...+.++..+.++..++++.....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~ 193 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKN 193 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 23445567766655421 134578899999999999999887743
No 233
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.32 E-value=7.3e-05 Score=69.31 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=30.4
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
....++|+|+.|+|||+|++.++...... -..++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHH
Confidence 44689999999999999999999987642 22366666543
No 234
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.30 E-value=2.6e-05 Score=72.00 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=33.2
Q ss_pred CCchhHHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 10 GIFESRKSIVKQLLEALNN--ENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~--~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
-.++|+++.++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4578999999988887651 222457799999999999999997643
No 235
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.23 E-value=0.00019 Score=69.57 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=46.0
Q ss_pred hhhcCCCCccEEEecCC-cCC-----CCCcCccCCcCCCEEEeCCCCCCCC------ccccCCcCCcEEEcccCcCcc--
Q 002024 403 KFFQGMKDLKVLDLSYI-LPL-----SLPPSLSFLVDLRTLRLEDCYLGDL------SVIGELSNLEILSLCRSSIKE-- 468 (979)
Q Consensus 403 ~~~~~l~~L~~L~L~~~-~~~-----~~p~~~~~l~~L~~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~l~~-- 468 (979)
..+...+.|++|+|+++ ... .+...+...++|++|+|++|.+.+- ..+...++|++|+|++|.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556667777777664 221 1223345556677777777665542 234445566666666666652
Q ss_pred ---cchhhccCccccEEec
Q 002024 469 ---IPETFCRLSHLWLLDL 484 (979)
Q Consensus 469 ---lp~~i~~L~~L~~L~l 484 (979)
+...+...++|++|++
T Consensus 110 ~~~l~~~L~~n~~L~~L~L 128 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRI 128 (185)
T ss_dssp HHHHHHGGGGCSSCCEEEC
T ss_pred HHHHHHHHHhCCCceEEEe
Confidence 3445555566666666
No 236
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.21 E-value=0.0006 Score=82.29 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=60.2
Q ss_pred CCchhHHHHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 10 GIFESRKSIVKQLLEALNN---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
..++|.++.++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh---
Confidence 4578999999888776641 1234688999999999999999998773 2344555544321100
Q ss_pred HHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCc
Q 002024 81 EIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWER 122 (979)
Q Consensus 81 ~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~ 122 (979)
+.+.+|.+ ++.........+.+.+......+++||+++..
T Consensus 530 -~~~l~g~~-~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 -VSRLIGAP-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp -CSSSCCCC-SCSHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred -HhhhcCCC-CCCcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 00111211 11111111122334444466789999999764
No 237
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.17 E-value=0.0015 Score=74.78 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=74.5
Q ss_pred chhHHHHHHHHHHHhc------CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHH
Q 002024 12 FESRKSIVKQLLEALN------NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAV 85 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~------~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~ 85 (979)
++|-++....+.+.+. ......+.|+|++|+|||++|+.++.... ..| ..+.+....+...+.......
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~---~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG--RKF---VRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT--CEE---EEECCCC--------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCe---EEEEecccchhhhhhhHHHHH
Confidence 5666666666644432 22346899999999999999999998874 222 223333222211111111111
Q ss_pred hCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc------hhhhcCCCCCC---------------CCCcEEEEE
Q 002024 86 LGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID------LQKVGIPLGED---------------HEGCNILLT 144 (979)
Q Consensus 86 l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~------~~~l~~~~~~~---------------~~~~~iiiT 144 (979)
.+.. ............ ...-++++|+++.... ...+...+... .....+|.|
T Consensus 158 ig~~------~~~~~~~~~~a~-~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 158 VGAM------PGRIIQGMKKAG-KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp ------------CHHHHHHTTC-SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred hccC------chHHHHHHHHhh-ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 1110 011111112111 2333888999876421 12222222110 133456666
Q ss_pred cCChh-----hhhccCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 145 SRSQG-----VCNQMDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 145 tr~~~-----~~~~~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
|.... +..++ ..+++.+++.++-.+++.++.
T Consensus 231 tN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 66532 22322 468999999999888887654
No 238
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.16 E-value=0.0018 Score=67.86 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+.+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999999884
No 239
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.13 E-value=0.0029 Score=69.13 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=36.4
Q ss_pred CCchhHHHHHHHHHHHhc------------------------------CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 10 GIFESRKSIVKQLLEALN------------------------------NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~------------------------------~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..++|.++.++.|...+. ......+.|+|++|+|||++|+.+++...
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899998888876661 01234678999999999999999998773
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.04 E-value=0.0007 Score=82.52 Aligned_cols=59 Identities=17% Similarity=0.315 Sum_probs=42.1
Q ss_pred CchhHHHHHHHHHHHhcCC---------CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 11 IFESRKSIVKQLLEALNNE---------NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~~~---------~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
.++|++..+..+...+... ....+.|+|++|+|||++|+.+++..... -...+.++++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~--~~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS--GGGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CCcEEEEechh
Confidence 4689999998887776421 12578899999999999999999877421 12244555543
No 241
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.00 E-value=0.0011 Score=71.13 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=39.8
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 7 SSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 7 ~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.....++|+++.++.+...+..+ .-+.++|++|+|||++|+.+++...
T Consensus 24 ~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 24 EVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 34567899999999988877654 3577999999999999999998764
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.92 E-value=0.0021 Score=77.29 Aligned_cols=172 Identities=10% Similarity=0.065 Sum_probs=97.3
Q ss_pred CCCCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC
Q 002024 8 SKGIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS 74 (979)
Q Consensus 8 ~~~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~ 74 (979)
....++|.++.+++|.+++.. ...+.|.|+|++|+|||+||+.++.... .. .+.+.....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~--~~---~i~v~~~~l-- 274 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETG--AF---FFLINGPEI-- 274 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTT--CE---EEEEEHHHH--
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC--Cc---EEEEEchHh--
Confidence 345688999999888877641 2346789999999999999999987654 11 233332111
Q ss_pred HHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc-------------hhhh---cCCCCCCCCC
Q 002024 75 IVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID-------------LQKV---GIPLGEDHEG 138 (979)
Q Consensus 75 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~-------------~~~l---~~~~~~~~~~ 138 (979)
..... .........+.+......+.++++|+++.... ...+ ...+. ...+
T Consensus 275 ------------~~~~~-g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~ 340 (806)
T 1ypw_A 275 ------------MSKLA-GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAH 340 (806)
T ss_dssp ------------SSSST-THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSC
T ss_pred ------------hhhhh-hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cccc
Confidence 00000 01122334444444445678999999853210 1111 11111 2234
Q ss_pred cEEEEEcCChhhh-hcc----CCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCCc
Q 002024 139 CNILLTSRSQGVC-NQM----DAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGLP 202 (979)
Q Consensus 139 ~~iiiTtr~~~~~-~~~----~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~P 202 (979)
..+|.||...+.. ..+ +-...+.+...+.++..+++...+....-.... ....+++.+.|+-
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~--~l~~la~~t~g~~ 407 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHV 407 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC--CTHHHHHSCSSCC
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccc--hhHHHHHhhcCcc
Confidence 5566666654322 111 223567888899999999998776533221111 1455667777654
No 243
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.90 E-value=0.0047 Score=63.50 Aligned_cols=86 Identities=7% Similarity=0.072 Sum_probs=58.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc-----chHHHH-HHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI-----EESARA-GYLWER 105 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~-~~~~~~ 105 (979)
.++.|+|++|+||||||.+++.....+..-..++|++..+..+.. .++.++.+.+.. +....+ ..+.+.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 368999999999999999998877643224578999988777653 377787764321 112222 333344
Q ss_pred H---hcCCeEEEEEcCCCCc
Q 002024 106 I---KMEKRILVILDDVWER 122 (979)
Q Consensus 106 l---~~~~~~LlvlDd~~~~ 122 (979)
+ ..++.-++|+|-+...
T Consensus 104 l~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTC
T ss_pred HHHhhccCceEEEEeccccc
Confidence 3 4567889999998654
No 244
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.76 E-value=0.0021 Score=67.65 Aligned_cols=62 Identities=15% Similarity=0.192 Sum_probs=42.0
Q ss_pred CCCCCch----hHHHHHHHHHHHhcCC---CceEEEEEcCCCCcHHHHHHHHHHHhh-hccCCCeEEEEEec
Q 002024 7 SSKGIFE----SRKSIVKQLLEALNNE---NVSVIGLCGMGGVGKTTLAKEIGKQVQ-ESKRYDTVVMAVVS 70 (979)
Q Consensus 7 ~~~~~~v----gR~~~l~~l~~~l~~~---~~~~i~i~G~~GiGKT~La~~~~~~~~-~~~~f~~~~~~~~~ 70 (979)
...+.|+ +|...++.+.+++... ..+.+.|+|++|+|||+||..+++... .. . ..+.++++.
T Consensus 121 ~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g-~~v~~~~~~ 190 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-G-VSTTLLHFP 190 (308)
T ss_dssp CCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-C-CCEEEEEHH
T ss_pred CCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEHH
Confidence 4455565 4555666666666531 146788999999999999999999876 33 2 345566553
No 245
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.65 E-value=0.0085 Score=59.66 Aligned_cols=44 Identities=23% Similarity=0.152 Sum_probs=33.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQ 79 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 79 (979)
..++.|.|++|+||||++..++. . .-..++|++.....+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~--~---~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL--L---SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH--H---HCSEEEEEESSCCCCHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--H---cCCcEEEEECCCCCCHHHHH
Confidence 36899999999999999999998 2 23468888876655555444
No 246
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.65 E-value=0.0014 Score=77.17 Aligned_cols=171 Identities=13% Similarity=0.169 Sum_probs=83.0
Q ss_pred CCCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 9 KGIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
...+.|-++..++|.+.+.- ...+-|.++||+|+|||.+|++++..... . ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--~-----f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--N-----FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC--E-----EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC--c-----eEEecc----
Confidence 34556777777777665431 12345789999999999999999988752 1 233321
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCccc----------------hhhhcCCCC--CCCC
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERID----------------LQKVGIPLG--EDHE 137 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~~----------------~~~l~~~~~--~~~~ 137 (979)
. +++.... + .....+..+.+.-.+..+.+|+||+++.... ...+...+. ....
T Consensus 545 ~----~l~s~~v----G-ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 P----ELLTMWF----G-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp H----HHHTTTC----S-SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred c----hhhcccc----c-hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 1 1221111 1 1234456666666667899999999864310 111211111 1122
Q ss_pred CcEEEEEcCChhhh-----hccCCcceEEcCCCCHHHHHHHHHHHhCCCCCCccchHHHHHHHHHcCCC
Q 002024 138 GCNILLTSRSQGVC-----NQMDAQKIFIVRTLLEEESWILFREAAGTVVENSDLNSIAREVAAKCSGL 201 (979)
Q Consensus 138 ~~~iiiTtr~~~~~-----~~~~~~~~~~l~~L~~~e~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~g~ 201 (979)
+..||.||...+.. ..-+-...+.++.-+.++-.++|+.+.....-..+. -...+++.+.|+
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~--dl~~la~~t~g~ 682 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGF 682 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------------
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHhCCCC
Confidence 33344455544332 211345788888777788788887776543222111 145566776664
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.57 E-value=0.0088 Score=63.61 Aligned_cols=85 Identities=21% Similarity=0.177 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc------cchHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG------IEESARAGYLWE 104 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 104 (979)
.+++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++...+. .+.......+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 478999999999999999999988763 23457888877666543 56666654321 111222222222
Q ss_pred HHhcCCeEEEEEcCCCCc
Q 002024 105 RIKMEKRILVILDDVWER 122 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~~ 122 (979)
.+...+.-++|+|.+...
T Consensus 134 l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHTSCCSEEEEECTTTC
T ss_pred HhhhcCCCeEEehHhhhh
Confidence 222355568889998554
No 248
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.56 E-value=0.012 Score=59.70 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEeccCCCHHHHHHHHHHHhCCccc----------ccchH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK----RYDTVVMAVVSHNLSIVKIQGEIAAVLGLTIC----------GIEES 96 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~----------~~~~~ 96 (979)
..++.|+|++|+|||||++.++....... .-..++|++.....+...+ .++++.++...+ .....
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36899999999999999999998643211 2357888887765555443 334555554321 11111
Q ss_pred H---HHHHHHHHHhcCCeEEEEEcCCCC
Q 002024 97 A---RAGYLWERIKMEKRILVILDDVWE 121 (979)
Q Consensus 97 ~---~~~~~~~~l~~~~~~LlvlDd~~~ 121 (979)
. ....+.+.+...+.-++|+|++..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 1 122233334345677888998743
No 249
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.43 E-value=0.0041 Score=64.31 Aligned_cols=71 Identities=15% Similarity=0.208 Sum_probs=42.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
+++.|+|++|+|||+||.+++... ...+.|++...... +... ..+.......+.+.+...+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~-----------v~~~--~~~le~~l~~i~~~l~~~~- 184 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEP-----------LSGY--NTDFNVFVDDIARAMLQHR- 184 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCS-----------STTC--BCCHHHHHHHHHHHHHHCS-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhh-----------hhhh--hcCHHHHHHHHHHHHhhCC-
Confidence 567899999999999999998861 12345666611111 0000 0122233344555555333
Q ss_pred EEEEEcCCCCc
Q 002024 112 ILVILDDVWER 122 (979)
Q Consensus 112 ~LlvlDd~~~~ 122 (979)
++|+|++...
T Consensus 185 -LLVIDsI~aL 194 (331)
T 2vhj_A 185 -VIVIDSLKNV 194 (331)
T ss_dssp -EEEEECCTTT
T ss_pred -EEEEeccccc
Confidence 9999998653
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.42 E-value=0.015 Score=62.24 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=42.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK----RYDTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++.|+|++|+|||++|.+++....... .-..++|++....++...+. ++++.++.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~ 183 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVD 183 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCC
Confidence 47899999999999999999998753211 23578999988877766554 345566554
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.42 E-value=0.01 Score=62.99 Aligned_cols=90 Identities=24% Similarity=0.271 Sum_probs=57.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc----------cchH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK----RYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG----------IEES 96 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~~ 96 (979)
..++.|+|++|+|||++|.+++....... .-..++|++....++..++. ++++.++.+... .+..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 36899999999999999999998753211 13478999988877766655 345666654311 1111
Q ss_pred ---HHHHHHHHHHhc-CCeEEEEEcCCCC
Q 002024 97 ---ARAGYLWERIKM-EKRILVILDDVWE 121 (979)
Q Consensus 97 ---~~~~~~~~~l~~-~~~~LlvlDd~~~ 121 (979)
.....+...+.+ .+.-++|+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 112233333334 5677888888743
No 252
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.21 E-value=0.013 Score=62.48 Aligned_cols=84 Identities=20% Similarity=0.177 Sum_probs=54.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc-----chHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI-----EESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~ 105 (979)
.+++.|+|++|+||||||.+++..... .-..++|++.....+.. .++.++.+.+.. ........+.+.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHH
Confidence 478999999999999999999987653 23468899887766543 356666543211 112222333333
Q ss_pred Hh-cCCeEEEEEcCCCC
Q 002024 106 IK-MEKRILVILDDVWE 121 (979)
Q Consensus 106 l~-~~~~~LlvlDd~~~ 121 (979)
+. ..+.-++|+|.+..
T Consensus 134 l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHTTTCCSEEEEECGGG
T ss_pred HHhcCCCCEEEEcChHh
Confidence 33 34566899999754
No 253
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.17 E-value=0.0015 Score=64.61 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=63.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc--
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM-- 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~-- 108 (979)
..++.++|+.|+||||++..++++... +...++.+..... .+ ...++++.++........ .....+++.+.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~--~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~-~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEY--ADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEV-ESAPEILNYIMSNS 85 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--TTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEE-SSTHHHHHHHHSTT
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHh--cCCEEEEEEeccC--ch-HHHHHHHhcCCCcccccc-CCHHHHHHHHHHHh
Confidence 478899999999999999999998863 3334555443222 11 223455556554332211 112233444332
Q ss_pred --CCeEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 109 --EKRILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 109 --~~~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
++.-++|+|+++.. +.++.+.. +.+ .|..||+|.+..++
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~df 128 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDKNF 128 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSBCT
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccccc
Confidence 34559999999753 22222211 112 26789999886543
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.10 E-value=0.017 Score=62.77 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=53.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc----------cch-
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK----RYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG----------IEE- 95 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----------~~~- 95 (979)
..++.|+|++|+|||||++.++-...... ....++|++....+....+ +.+++.++..... ...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46899999999999999998875433211 2356889887766555443 3466777654220 011
Q ss_pred --HHHHHHHHHHHhcCCeEEEEEcCC
Q 002024 96 --SARAGYLWERIKMEKRILVILDDV 119 (979)
Q Consensus 96 --~~~~~~~~~~l~~~~~~LlvlDd~ 119 (979)
......+.+.+...+.-++|+|.+
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~ 282 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSV 282 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecch
Confidence 111222333333456778888886
No 255
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.08 E-value=0.041 Score=59.03 Aligned_cols=156 Identities=8% Similarity=-0.059 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcC
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKME 109 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~ 109 (979)
-.++..++|+.|.||++.++.++...... .|+....+......+.+++...+. . .-+ .+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~-~------------------~pl-f~ 75 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQ-A------------------MSL-FA 75 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHH-H------------------HHH-CC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhc-C------------------cCC-cc
Confidence 34688899999999999999998876532 343222222333334433332211 0 112 36
Q ss_pred CeEEEEEcCCCC-c--cchhhhcCCCCCCCCCcEEEEEcCC-------hhhhhc-cCCcceEEcCCCCHHHHHHHHHHHh
Q 002024 110 KRILVILDDVWE-R--IDLQKVGIPLGEDHEGCNILLTSRS-------QGVCNQ-MDAQKIFIVRTLLEEESWILFREAA 178 (979)
Q Consensus 110 ~~~LlvlDd~~~-~--~~~~~l~~~~~~~~~~~~iiiTtr~-------~~~~~~-~~~~~~~~l~~L~~~e~~~l~~~~~ 178 (979)
++-++|+|+++. . ...+.+...+..-.++..+|+++.. ..+... ......+++.+++.++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 677888999876 3 3344444333333356666665532 223322 2334789999999999998888777
Q ss_pred CCCCCCccchHHHHHHHHHcCCCchHHHH
Q 002024 179 GTVVENSDLNSIAREVAAKCSGLPIAILT 207 (979)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~ 207 (979)
.... -.-..+.+..+++.++|-..++..
T Consensus 156 ~~~g-~~i~~~a~~~l~~~~~gdl~~~~~ 183 (343)
T 1jr3_D 156 KQLN-LELDDAANQVLCYCYEGNLLALAQ 183 (343)
T ss_dssp HHTT-CEECHHHHHHHHHSSTTCHHHHHH
T ss_pred HHcC-CCCCHHHHHHHHHHhchHHHHHHH
Confidence 4222 122345688899999997776654
No 256
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.08 E-value=0.016 Score=61.83 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=54.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc-----chHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI-----EESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~-----~~~~~~~~~~~~ 105 (979)
.+++.|+|++|+||||||.+++...... -..++|++.....+.. .++.++.+.... .....+..+.+.
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 3689999999999999999999877632 3468899987776643 255666543211 112223333333
Q ss_pred Hh-cCCeEEEEEcCCCC
Q 002024 106 IK-MEKRILVILDDVWE 121 (979)
Q Consensus 106 l~-~~~~~LlvlDd~~~ 121 (979)
+. ....-++|+|.+..
T Consensus 136 l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHTCCSEEEEECGGG
T ss_pred HHhccCCCEEEEcCHHH
Confidence 32 34556889999743
No 257
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.02 E-value=0.021 Score=61.27 Aligned_cols=84 Identities=26% Similarity=0.218 Sum_probs=54.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc-----cchHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG-----IEESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 105 (979)
.+++.|+|++|+|||+||.+++...... -..++|++.....+.. .++.++.+... ......+....+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 3688999999999999999999877532 3468999988766543 25566654221 1112223333344
Q ss_pred Hh-cCCeEEEEEcCCCC
Q 002024 106 IK-MEKRILVILDDVWE 121 (979)
Q Consensus 106 l~-~~~~~LlvlDd~~~ 121 (979)
+. .+..-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 43 34556899999854
No 258
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.00 E-value=0.05 Score=59.31 Aligned_cols=125 Identities=18% Similarity=0.124 Sum_probs=70.8
Q ss_pred CCCCCceEEEccCCCCcccChhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEE
Q 002024 382 LECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEIL 459 (979)
Q Consensus 382 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L 459 (979)
..+.+|+.+.+..+ +..+....|..+..|+.+.+..++...-..+|..+..|+.+.+... ++.+ ..+.++++|+.+
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 34555666555433 3445555566666666666655444222345556666666666433 2222 345566666666
Q ss_pred EcccCcCcccc-hhhccCccccEEecCCCCCccccCcchhccCcCCcEEEcc
Q 002024 460 SLCRSSIKEIP-ETFCRLSHLWLLDLDHCRQLALIPHGVISQLDKLEEFYMW 510 (979)
Q Consensus 460 ~Ls~~~l~~lp-~~i~~L~~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~ 510 (979)
.+.++.++.++ ..|.++.+|+.+.+.. .++.+....+.++++|+.+.+.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 66666666554 3566666777776654 2555555556666666666654
No 259
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.98 E-value=0.026 Score=59.96 Aligned_cols=58 Identities=21% Similarity=0.241 Sum_probs=42.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc----------cCC----CeEEEEEeccCCCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQES----------KRY----DTVVMAVVSHNLSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~----------~~f----~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 89 (979)
..++.|+|++|+|||++|.+++...... ... ..++|++....++..++.+ +++.++.+
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~ 169 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGID 169 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCC
Confidence 4789999999999999999998864211 111 4788999888777766654 45666654
No 260
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.92 E-value=0.019 Score=57.78 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQG 80 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 80 (979)
..+++|.|++|+|||||++.++...... -..++|+.... ...++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~ 68 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIR 68 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHH
Confidence 3689999999999999999999766522 23566766433 3444433
No 261
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.86 E-value=0.02 Score=59.50 Aligned_cols=87 Identities=17% Similarity=0.105 Sum_probs=48.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhc
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKM 108 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 108 (979)
..++++|+|++|+||||++..++....... ...+..++.... ....+.+....+..+.+................+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh--
Confidence 357999999999999999999998876322 235666665432 2233334444444444332112222222223333
Q ss_pred CCeEEEEEcCC
Q 002024 109 EKRILVILDDV 119 (979)
Q Consensus 109 ~~~~LlvlDd~ 119 (979)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 33456778843
No 262
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.83 E-value=0.0099 Score=58.21 Aligned_cols=43 Identities=23% Similarity=0.403 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHhcC---CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 14 SRKSIVKQLLEALNN---ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 14 gR~~~l~~l~~~l~~---~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|++.++++.+.+.. ....+|+|.|++|+||||+++.++....
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 477788888877753 3457899999999999999999988764
No 263
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.78 E-value=0.043 Score=54.91 Aligned_cols=57 Identities=26% Similarity=0.265 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhcc----CCCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESK----RYDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~----~f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
..+++|.|++|+|||||++.++....... ....++|+.......... ...+++.++.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~ 85 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 85 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 37999999999999999999987543211 134577877655433332 3444555444
No 264
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.67 E-value=0.011 Score=58.16 Aligned_cols=54 Identities=19% Similarity=0.309 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhcC--CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 15 RKSIVKQLLEALNN--ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 15 R~~~l~~l~~~l~~--~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
+++.+++|.+.+.. ....+|+|.|++|+|||||++.++...... ...+.++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~--g~~~g~v~~d 59 (208)
T 3c8u_A 4 LAALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQ--GLPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHT--TCCEEEEESG
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhc--CCceEEEecC
Confidence 34566677777653 356899999999999999999998877632 1224455543
No 265
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.55 E-value=0.045 Score=59.72 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=69.9
Q ss_pred hhhhcCCCCccEEEecCCcCCCCCcCccCCcCCCEEEeCCCCCCCC--ccccCCcCCcEEEcccCcCcccch-hhccCcc
Q 002024 402 DKFFQGMKDLKVLDLSYILPLSLPPSLSFLVDLRTLRLEDCYLGDL--SVIGELSNLEILSLCRSSIKEIPE-TFCRLSH 478 (979)
Q Consensus 402 ~~~~~~l~~L~~L~L~~~~~~~~p~~~~~l~~L~~L~L~~~~l~~l--~~i~~L~~L~~L~Ls~~~l~~lp~-~i~~L~~ 478 (979)
...|..+..|+.+.+.......-..++..+..|+.+.+..+ ++.+ ..+.+..+|+.+.+.. .+..++. .|.++.+
T Consensus 210 ~~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTT
T ss_pred ecccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccc
Confidence 34455566666666665444233345566666666666544 3333 3455566666666654 3444443 4566666
Q ss_pred ccEEecCCCCCccccCcchhccCcCCcEEEcccCccccccccccchhccccccccceeccc
Q 002024 479 LWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNTFKNWDCETNAKVVELQALTRLTNLMFH 539 (979)
Q Consensus 479 L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 539 (979)
|+.+.+.++ .+..++...+.++.+|+.+.+..+.. ...-..+.++++|+.+.+.
T Consensus 288 L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~l~------~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 288 LTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTALK------TIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp CCEEEECCT-TCCEECTTTTTTCTTCCEEECCTTCC------EECTTTTTTCTTCCCCCCC
T ss_pred ccccccccc-ccceehhhhhcCCCCCCEEEcCcccc------EEHHHHhhCCCCCCEEEEC
Confidence 666666552 35556655566666666666643211 1111334555666665553
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.51 E-value=0.071 Score=58.17 Aligned_cols=38 Identities=24% Similarity=0.350 Sum_probs=30.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
..+|.++|++|+||||++..++..... .-..+..+++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~--~G~kVllv~~D 137 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK--RGYKVGVVCSD 137 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 589999999999999999999988873 33455555543
No 267
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.48 E-value=0.062 Score=56.21 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhcC----CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 13 ESRKSIVKQLLEALNN----ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 13 vgR~~~l~~l~~~l~~----~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
+|..+.+..+...+.. ....+|+|.|++|+||||+++.+.........-..+..+....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 4455555555444432 2345899999999999999999987765211123355565544
No 268
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.46 E-value=0.11 Score=54.20 Aligned_cols=102 Identities=24% Similarity=0.259 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcC--------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC-HHHHHHHHHHHh
Q 002024 16 KSIVKQLLEALNN--------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS-IVKIQGEIAAVL 86 (979)
Q Consensus 16 ~~~l~~l~~~l~~--------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~i~~~l 86 (979)
+...++|.+.+.. ....+|.|+|++|+||||++..++...... -..+.+++...... ..+-+...++..
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccccccHHHHHHHHHHHHHc
Confidence 3444555565532 235789999999999999999999887632 34566666543211 112233455555
Q ss_pred CCccccc---chH-HH-HHHHHHHHhcCCeEEEEEcCCC
Q 002024 87 GLTICGI---EES-AR-AGYLWERIKMEKRILVILDDVW 120 (979)
Q Consensus 87 ~~~~~~~---~~~-~~-~~~~~~~l~~~~~~LlvlDd~~ 120 (979)
+.+.-.. .+. .. ...+...+. ...-++|+|...
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~-~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALA-RNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHH-TTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHh-cCCCEEEEECCC
Confidence 5442111 111 11 123333343 344477788653
No 269
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.40 E-value=0.023 Score=54.22 Aligned_cols=111 Identities=17% Similarity=0.092 Sum_probs=61.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC---CCHHHHHHHHHHHhCCc-----------ccccc-hH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN---LSIVKIQGEIAAVLGLT-----------ICGIE-ES 96 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~i~~~l~~~-----------~~~~~-~~ 96 (979)
..|.|++..|.||||.|-..+-+.. .+-..|.++.+... .+...+.+. ++.. .++.. +.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~--g~G~rV~~vQF~Kg~~~~gE~~~l~~----L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAV--GHGKNVGVVQFIKGTWPNGERNLLEP----HGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHH--HTTCCEEEEESSCCSSCCHHHHHHGG----GTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEEeeCCCCCccHHHHHHh----CCcEEEEcccccccCCCCcHHHH
Confidence 4566777777999999999998887 45556777765442 222333333 3211 00000 11
Q ss_pred HHH----HHHHHHHhcCCeEEEEEcCCCC-----ccchhhhcCCCCCCCCCcEEEEEcCCh
Q 002024 97 ARA----GYLWERIKMEKRILVILDDVWE-----RIDLQKVGIPLGEDHEGCNILLTSRSQ 148 (979)
Q Consensus 97 ~~~----~~~~~~l~~~~~~LlvlDd~~~-----~~~~~~l~~~~~~~~~~~~iiiTtr~~ 148 (979)
..+ ....+.+.+++-=|||+|++-. ....+.+...+........||+|+|..
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 111 2223333345666999999732 222233333333344567899999975
No 270
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.38 E-value=0.045 Score=58.51 Aligned_cols=57 Identities=26% Similarity=0.280 Sum_probs=37.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccC----CCeEEEEEeccCCCHHHHHHHHHHHhCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKR----YDTVVMAVVSHNLSIVKIQGEIAAVLGL 88 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~~i~~~l~~ 88 (979)
..++.|+|++|+|||||++.++........ -..++|++....+.... +..+++.++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~-i~~i~q~~~~ 191 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGL 191 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH-HHHHHHTTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH-HHHHHHHcCC
Confidence 479999999999999999999887531111 13568888765544333 3345555443
No 271
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.35 E-value=0.0017 Score=62.51 Aligned_cols=109 Identities=17% Similarity=0.038 Sum_probs=51.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
.++.|+|+.|+||||++..++.+..... ..++++..... .+.....+...++........ .....+.+.+. ++.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~~d--~r~~~~~i~s~~g~~~~~~~~-~~~~~~~~~~~-~~~ 77 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPKID--SRYHSTMIVSHSGNGVEAHVI-ERPEEMRKYIE-EDT 77 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC-------CCCEECC----CEECEEE-SSGGGGGGGCC-TTE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeeccc--cccCcccEEecCCCceeeEEE-CCHHHHHHHhc-CCC
Confidence 5788999999999999988887765322 23444432211 000000111111211111000 00111222221 356
Q ss_pred EEEEEcCCCCc-cchhhhcCCCCCCCCCcEEEEEcCCh
Q 002024 112 ILVILDDVWER-IDLQKVGIPLGEDHEGCNILLTSRSQ 148 (979)
Q Consensus 112 ~LlvlDd~~~~-~~~~~l~~~~~~~~~~~~iiiTtr~~ 148 (979)
-++++|+++.. .++......+.+ .+..|++|.+..
T Consensus 78 dvviIDE~Q~~~~~~~~~l~~l~~--~~~~Vi~~Gl~~ 113 (184)
T 2orw_A 78 RGVFIDEVQFFNPSLFEVVKDLLD--RGIDVFCAGLDL 113 (184)
T ss_dssp EEEEECCGGGSCTTHHHHHHHHHH--TTCEEEEEEESB
T ss_pred CEEEEECcccCCHHHHHHHHHHHH--CCCCEEEEeecc
Confidence 79999999765 233322221222 267788887754
No 272
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.16 E-value=0.026 Score=59.64 Aligned_cols=42 Identities=12% Similarity=0.098 Sum_probs=29.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
....++|+|++|+|||||++.+++....+..--.++++.+..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGE 214 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDE 214 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESS
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecC
Confidence 347899999999999999999988765432222244555553
No 273
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.14 E-value=0.0081 Score=64.91 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=37.5
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 6 SSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 6 ~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+.....++|++..+..+..........-+.|+|++|+|||++|+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 334567999998776655444332233488999999999999999998764
No 274
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.13 E-value=0.16 Score=55.78 Aligned_cols=72 Identities=22% Similarity=0.375 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcC---------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHh
Q 002024 17 SIVKQLLEALNN---------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVL 86 (979)
Q Consensus 17 ~~l~~l~~~l~~---------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l 86 (979)
...+++.+.+.. ...++|.|+|.+|+||||++..++.....+. -..|..+++.... ...+.+.......
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~-G~kVllvd~D~~r~~a~~ql~~~~~~~ 155 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKH-KKKVLVVSADVYRPAAIKQLETLAEQV 155 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTS-CCCEEEEECCCSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEEecCCCCccHHHHHHhhcccC
Confidence 344556666542 2357999999999999999999999887431 3456677665432 2223333344444
Q ss_pred CCc
Q 002024 87 GLT 89 (979)
Q Consensus 87 ~~~ 89 (979)
+.+
T Consensus 156 ~l~ 158 (433)
T 2xxa_A 156 GVD 158 (433)
T ss_dssp TCE
T ss_pred Cee
Confidence 443
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.04 E-value=0.024 Score=54.66 Aligned_cols=30 Identities=37% Similarity=0.493 Sum_probs=25.6
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 28 NENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 28 ~~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
.....+|.|.|++|+||||+++.++.....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 334578999999999999999999998763
No 276
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.01 E-value=0.093 Score=57.28 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~ 89 (979)
.++|.++|++|+||||++..++.....+ -..+..+++... ....+-+....+..+.+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~~D~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVAADVYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEEECCSCHHHHHHHHHHHHTTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecCccchhHHHHHHHHHHhcCCc
Confidence 5799999999999999999999888643 345666655432 12223333444444443
No 277
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.97 E-value=0.01 Score=66.48 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=38.4
Q ss_pred CCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 9 KGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...++|+++.++.+...+..+ .-|.|+|++|+|||+||+.+++...
T Consensus 21 ~~~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 21 EKGLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTTCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhhhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHh
Confidence 356899999999888777654 4677999999999999999988664
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.84 E-value=0.065 Score=54.23 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
.++.|.|++|+||||+|.+++..... .-..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~--~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK--MGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccC
Confidence 68899999999999999999877652 234677877543
No 279
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.82 E-value=0.016 Score=55.46 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|.|+|++|+||||+|+.+++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998764
No 280
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.79 E-value=0.14 Score=53.11 Aligned_cols=88 Identities=22% Similarity=0.197 Sum_probs=51.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCC-HHHHHHHHHHHhCCccccc----chHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLS-IVKIQGEIAAVLGLTICGI----EESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~i~~~l~~~~~~~----~~~~~~~~~~~~ 105 (979)
..++.++|++|+||||++..++..... .-..+.+++...... ..+.++...+..+.+.... +....+....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 568999999999999999999988763 234577776654322 2223344455555542211 112222334444
Q ss_pred HhcCCeEEEEEcCCC
Q 002024 106 IKMEKRILVILDDVW 120 (979)
Q Consensus 106 l~~~~~~LlvlDd~~ 120 (979)
+.....=++|+|-..
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 432333367788653
No 281
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.78 E-value=0.16 Score=53.34 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=38.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAV 85 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~ 85 (979)
..++.|.|.+|+|||++|.+++.....+. ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 46899999999999999999998776432 567787755 5666666666554
No 282
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.78 E-value=0.063 Score=58.74 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=50.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCC--------cccccchHHH----
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGL--------TICGIEESAR---- 98 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~~---- 98 (979)
+.++|+|++|+|||+|+..++........ +.++++.+.... ...++.+++...=.. ...+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~-~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQEHG-GISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHHTC-CCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhccC-cEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 46889999999999999999887653322 334555554432 344555444322000 0001111111
Q ss_pred -HHHHHHHHh--cCCeEEEEEcCCCC
Q 002024 99 -AGYLWERIK--MEKRILVILDDVWE 121 (979)
Q Consensus 99 -~~~~~~~l~--~~~~~LlvlDd~~~ 121 (979)
...+.+.+. ++++.|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 123333333 48999999999843
No 283
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.76 E-value=0.017 Score=54.75 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|++|+||||+|+.+++...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999998764
No 284
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.75 E-value=0.022 Score=61.69 Aligned_cols=46 Identities=28% Similarity=0.263 Sum_probs=36.8
Q ss_pred CchhHHHHHHHHHHHhc-------------C--CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 11 IFESRKSIVKQLLEALN-------------N--ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~-------------~--~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.++|.++.++.+...+. . ...+.|.++|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999888772 1 1235688999999999999999998773
No 285
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.70 E-value=0.054 Score=69.83 Aligned_cols=83 Identities=19% Similarity=0.166 Sum_probs=56.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc------cchHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG------IEESARAGYLWE 104 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 104 (979)
.+.|.|+|++|+|||+||.+++.... ..-..++|+++.+..+... ++.++.+.+. .+.......+.+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~--~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~ 1499 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1499 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH--HcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHH
Confidence 47889999999999999999998776 3345688998888776655 5566633211 112222333333
Q ss_pred HHhcCCeEEEEEcCCC
Q 002024 105 RIKMEKRILVILDDVW 120 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~ 120 (979)
...+.+.-+||+|.+.
T Consensus 1500 lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1500 LARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHTCCSEEEESCGG
T ss_pred HHhcCCCCEEEEcChh
Confidence 3345677899999985
No 286
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.62 E-value=0.08 Score=53.69 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 378999999999999999999843
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.58 E-value=0.014 Score=55.86 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
|.|.|.||+|+|||||++.+..+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999999987654
No 288
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.55 E-value=0.029 Score=54.72 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=24.9
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
....+|+|.|++|+||||+++.++....
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999998875
No 289
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.55 E-value=0.21 Score=52.57 Aligned_cols=57 Identities=25% Similarity=0.282 Sum_probs=38.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC-CCHHHHHHHHHHHhCC
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN-LSIVKIQGEIAAVLGL 88 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~i~~~l~~ 88 (979)
...+++|+|++|+||||+++.++...... -..+.+....-. ....+-.+...+.++.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~--~g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH--GFSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCEEEEEeecccccchHHHHHHHHHHcCc
Confidence 35799999999999999999999877632 234555554322 2344445555666664
No 290
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.54 E-value=0.022 Score=55.60 Aligned_cols=26 Identities=38% Similarity=0.529 Sum_probs=23.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.++|+|+|++|+||||+++.++....
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998774
No 291
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.51 E-value=0.021 Score=54.67 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++++|+|++|+|||||++.+.....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6899999999999999999987653
No 292
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.48 E-value=0.25 Score=53.80 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHH--HHHHHHHHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVK--IQGEIAAVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~--~~~~i~~~l~~~ 89 (979)
.++|.|+|++|+||||++..++...... -..+..+++.. ..... .++......+.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~--g~~Vllvd~D~-~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADT-QRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEECCS-SCHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEeeccc-cCchhHHHHHHhcccCCcc
Confidence 5789999999999999999999988733 34566666533 22222 233445555543
No 293
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.46 E-value=0.023 Score=55.45 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=23.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+|+|.|++|+||||+++.++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999998776
No 294
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.42 E-value=0.073 Score=55.72 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=31.6
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
....+|+|.|++|+|||||++.++.-......-..+.++.....
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 44579999999999999999999887653211134666665443
No 295
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.33 E-value=0.025 Score=54.76 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+|+|.|++|+||||+++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 478999999999999999999765
No 296
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.30 E-value=0.025 Score=54.37 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+.|.|+|++|+||||+|+.+++...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998764
No 297
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.29 E-value=0.14 Score=53.20 Aligned_cols=87 Identities=16% Similarity=0.204 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHH-HHHHHHHHHhCCcccc----cchHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIV-KIQGEIAAVLGLTICG----IEESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~~i~~~l~~~~~~----~~~~~~~~~~~~~ 105 (979)
.++++|+|++|+||||++..++...... -..+.+++........ .....+.+..+.+.-. .............
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~ 175 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEK 175 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHT--TCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999887632 3456666654332211 1123345555544321 1111222333344
Q ss_pred HhcCCeEEEEEcCC
Q 002024 106 IKMEKRILVILDDV 119 (979)
Q Consensus 106 l~~~~~~LlvlDd~ 119 (979)
......=++|+|.-
T Consensus 176 ~~~~~~D~viiDtp 189 (295)
T 1ls1_A 176 ARLEARDLILVDTA 189 (295)
T ss_dssp HHHHTCCEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 32233446778876
No 298
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.25 E-value=0.057 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|.|.|++|+||+|.|+.+++++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467899999999999999998774
No 299
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.25 E-value=0.021 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|+|++|+||||+++.++....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988764
No 300
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.24 E-value=0.36 Score=53.83 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=29.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
..++|.|+|.+|+||||++..++.....+ -..+..++..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~--G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK--GWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEecc
Confidence 35689999999999999999999887643 2345566653
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.20 E-value=0.027 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.++|+|+||+|+||||+++.++....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999987654
No 302
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.12 E-value=0.059 Score=55.77 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=35.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhcc-CCCeEEEEEeccCCCHHHHHHHHH
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESK-RYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
....+|+|.|++|+||||||+.++....... ....+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 3467899999999999999999988775321 123344445544333334444443
No 303
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.09 E-value=0.03 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGK 53 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~ 53 (979)
.+|.|.|++|+||||+|+.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.07 E-value=0.032 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|.|.|++|+||||+|+.+++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999876
No 305
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.06 E-value=0.034 Score=53.47 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..++|+|+||+|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987653
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.04 E-value=0.053 Score=50.65 Aligned_cols=26 Identities=27% Similarity=0.274 Sum_probs=23.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+++.|.|++|+||||++..++....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 57899999999999999999998876
No 307
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.01 E-value=0.062 Score=56.32 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=33.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
++.++|+|+|-||+||||.+.+++.-.. ....+|.-+++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA--~~GkkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFS--ILGKRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHH--HCCCeEEEEecCC
Confidence 4579999999999999999999998887 3445688888774
No 308
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.99 E-value=0.0048 Score=74.08 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=82.9
Q ss_pred CCCchhHHHHHHHHHHHhcC-------------CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 9 KGIFESRKSIVKQLLEALNN-------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~-------------~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
...++|-++..+++.+.+.- ...+.+.++|++|+|||+||+.++.... ..|- .+..+.-.+
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i---~v~~~~l~~- 549 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFI---SIKGPELLT- 549 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCC---CCCCSSSTT-
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEE---EEechHhhh-
Confidence 34566777777777766531 1235678999999999999999999875 2221 111111100
Q ss_pred HHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCeEEEEEcCCCCcc----------------chhhhcCCCCC--CCC
Q 002024 76 VKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKRILVILDDVWERI----------------DLQKVGIPLGE--DHE 137 (979)
Q Consensus 76 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~LlvlDd~~~~~----------------~~~~l~~~~~~--~~~ 137 (979)
...+ .....+..+.+......+.++++|+++... ....+...+.. ...
T Consensus 550 -------------~~~g-~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~ 615 (806)
T 1ypw_A 550 -------------MWFG-ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp -------------CCTT-TSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------
T ss_pred -------------hhcC-ccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC
Confidence 0000 112233444444443456788899975420 02333333322 122
Q ss_pred CcEEEEEcCChhhhhc--c---CCcceEEcCCCCHHHHHHHHHHHhCC
Q 002024 138 GCNILLTSRSQGVCNQ--M---DAQKIFIVRTLLEEESWILFREAAGT 180 (979)
Q Consensus 138 ~~~iiiTtr~~~~~~~--~---~~~~~~~l~~L~~~e~~~l~~~~~~~ 180 (979)
+..||.||...+.... . +-...+.++..+.++..+++..+...
T Consensus 616 ~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred CeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 3345556654332211 1 22357788888889999999877743
No 309
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.96 E-value=0.038 Score=53.53 Aligned_cols=26 Identities=27% Similarity=0.427 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|.|.|++|+||||+++.+++...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999988763
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.94 E-value=0.033 Score=53.84 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|++|+||||+++.+++...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998775
No 311
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.94 E-value=0.054 Score=53.99 Aligned_cols=43 Identities=23% Similarity=0.347 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 14 SRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 14 gR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+++..+.+.+.+.......|.|+|.+|+|||||+..++....
T Consensus 21 ~~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 21 ANKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3444455566655555568899999999999999999998764
No 312
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.92 E-value=0.027 Score=55.12 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|++|+||||+|+.++....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999988763
No 313
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.92 E-value=0.21 Score=52.50 Aligned_cols=51 Identities=14% Similarity=0.076 Sum_probs=37.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAV 85 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~ 85 (979)
..++.|.|.+|+|||++|.+++..... .-..|+|++. .-+..++...+...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHH
Confidence 368999999999999999999988764 3345777655 45566666665444
No 314
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.91 E-value=0.035 Score=56.43 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++|.|.|++|+||||+|+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998764
No 315
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.90 E-value=0.031 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 47899999999999999999 443
No 316
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.89 E-value=0.069 Score=53.88 Aligned_cols=43 Identities=19% Similarity=0.165 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 14 SRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 14 gR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+....+.++.+... ......|+|.|++|+||||+|+.+++...
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455555544432 23446789999999999999999987763
No 317
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.89 E-value=0.034 Score=54.48 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.+++|.|++|+|||||++.++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 689999999999999999998764
No 318
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.88 E-value=0.023 Score=66.07 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=42.0
Q ss_pred cCCCCCCchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 5 TSSSKGIFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 5 ~~~~~~~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|.....++|.++.++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 36 rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 36 PEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp CSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 4455567899999999988888765 5788999999999999999998664
No 319
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.84 E-value=0.03 Score=53.60 Aligned_cols=26 Identities=46% Similarity=0.597 Sum_probs=22.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+.|.|+|++|+||||+++.+++...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998764
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.84 E-value=0.027 Score=54.18 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++++|.|++|+|||||++.++....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 321
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.83 E-value=0.057 Score=50.06 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
....+++|.|+.|+|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334799999999999999999998865
No 322
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.82 E-value=0.045 Score=51.97 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+|+|.|++|+||||+++.++...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 323
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.79 E-value=0.031 Score=54.80 Aligned_cols=26 Identities=35% Similarity=0.620 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.++|+|.|++|+||||+++.++....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999988763
No 324
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.75 E-value=0.075 Score=55.85 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHhc----CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 13 ESRKSIVKQLLEALN----NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 13 vgR~~~l~~l~~~l~----~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++-++..+++.+.+. .+....|.|+|+.|+||||+++.++....
T Consensus 2 ~~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344455555555543 44456789999999999999999988765
No 325
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.61 E-value=0.042 Score=51.77 Aligned_cols=26 Identities=35% Similarity=0.606 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...|+|.|+.|+||||+++.+++...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999998765
No 326
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.057 Score=53.60 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=35.4
Q ss_pred CchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 11 IFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+.+.++..+.+...+.....+.|.|+|.+|+|||||+..++....
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 10 LLAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp -CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3445566666676666555678999999999999999999998764
No 327
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.59 E-value=0.046 Score=51.99 Aligned_cols=24 Identities=46% Similarity=0.565 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.++|+|++|+|||||++.++....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988764
No 328
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.58 E-value=0.048 Score=53.70 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+|+|.|++|+|||||++.++....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 347899999999999999999988754
No 329
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.58 E-value=0.042 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGK 53 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~ 53 (979)
.+++|.|++|+||||+++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999975
No 330
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.56 E-value=0.1 Score=50.60 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998875
No 331
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.53 E-value=0.041 Score=52.27 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+.|.|.|++|+||||+|+.++....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3588999999999999999998764
No 332
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.49 E-value=0.076 Score=50.83 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=28.6
Q ss_pred HHHHHHHHhcCC-CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 18 IVKQLLEALNNE-NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 18 ~l~~l~~~l~~~-~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
-+..+..++.+- ....+.|+||+|+|||++|..+++...
T Consensus 44 f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 44 FLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555555432 124688999999999999999998764
No 333
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.44 E-value=0.045 Score=53.64 Aligned_cols=25 Identities=40% Similarity=0.413 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+|+|.|++|+||||+++.++...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998765
No 334
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.43 E-value=0.051 Score=53.12 Aligned_cols=27 Identities=37% Similarity=0.399 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+|+|.|+.|+||||+|+.+++...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 457899999999999999999987653
No 335
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.42 E-value=0.046 Score=53.03 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|+.|+||||+|+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998764
No 336
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.38 E-value=0.036 Score=53.97 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+.++|+|++|+|||||++.+.....
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 6789999999999999999987653
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.36 E-value=0.055 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..|+|.|+.|+||||+++.+++...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5789999999999999999988764
No 338
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.36 E-value=0.073 Score=55.14 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+|.|.|++|+||||+|+.++...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35788999999999999999998765
No 339
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.34 E-value=0.12 Score=46.03 Aligned_cols=51 Identities=14% Similarity=0.204 Sum_probs=28.4
Q ss_pred EEEccCCccc--ccCCcCCCCCceEEEccCCCCcccChhhhcCCCCccEEEecC
Q 002024 367 GISLMSNYIH--EVPAMLECPKLQVLLLQENSPLVIPDKFFQGMKDLKVLDLSY 418 (979)
Q Consensus 367 ~l~l~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~ 418 (979)
.++.+++.++ .+|... .++|+.|+|++|.+..++.+.|..+++|++|+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 5666666666 666321 23566666666666666665555444444444444
No 340
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.34 E-value=0.054 Score=51.93 Aligned_cols=24 Identities=33% Similarity=0.412 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
...|+|+|+.|+||||+++.+++.
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999876
No 341
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.32 E-value=0.044 Score=54.08 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+++|.|++|+|||||++.++....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 47899999999999999999987654
No 342
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.30 E-value=0.054 Score=52.50 Aligned_cols=25 Identities=28% Similarity=0.256 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|+.|+||||+|+.+++...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6799999999999999999987763
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.27 E-value=0.049 Score=53.00 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|+.|+||||+|+.+++...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 344
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.27 E-value=0.057 Score=53.17 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
.+|+|.|+.|+||||+|+.+++....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 67899999999999999999998763
No 345
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.27 E-value=0.043 Score=51.90 Aligned_cols=21 Identities=43% Similarity=0.637 Sum_probs=18.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEI 51 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~ 51 (979)
..+++|+|++|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 478999999999999999964
No 346
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.26 E-value=0.043 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|+.|+||||+|+.+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999998764
No 347
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.23 E-value=0.051 Score=53.13 Aligned_cols=24 Identities=38% Similarity=0.625 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 688999999999999999998775
No 348
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.23 E-value=0.29 Score=48.93 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=31.1
Q ss_pred CchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 11 IFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.+.=|+...+.+..++... -+.|+|+.|.|||.+|..++...
T Consensus 91 ~~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 91 EISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3455666667666666543 36789999999999999887664
No 349
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.23 E-value=0.15 Score=53.52 Aligned_cols=38 Identities=26% Similarity=0.362 Sum_probs=30.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
.++|+|+|++|+||||++..++..... .-..+.+++..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~--~g~kVllid~D 142 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE--LGYKVLIAAAD 142 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 578999999999999999999988763 23456666654
No 350
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.23 E-value=0.049 Score=55.14 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|++|+||||+++.+++...
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997764
No 351
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.22 E-value=0.041 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.525 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|++|+||||+|+.+++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998764
No 352
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.21 E-value=0.25 Score=51.74 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=29.4
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
....+|+|.|++|+|||||++.++........-..+.+++...
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 3457999999999999999999987654111112355555444
No 353
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.21 E-value=0.062 Score=52.70 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=24.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..++|.|.|++|+||+|.|+.+++++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 458999999999999999999998774
No 354
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.21 E-value=0.047 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.472 Sum_probs=22.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++.-.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998765
No 355
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.16 E-value=0.17 Score=64.47 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=62.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc------cchHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG------IEESARAGYLWE 104 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~~~~ 104 (979)
.++|-|+|+.|+||||||.+++.... ..-..++|+++.+..++.- ++.+|.+.+. ....+....+..
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~--~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~ 1503 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDA 1503 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH--hcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHH
Confidence 48999999999999999999998776 4456788999988877754 7888876432 122334444444
Q ss_pred HHhcCCeEEEEEcCCCC
Q 002024 105 RIKMEKRILVILDDVWE 121 (979)
Q Consensus 105 ~l~~~~~~LlvlDd~~~ 121 (979)
.+..+..-++|+|-|..
T Consensus 1504 ~~~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1504 LARSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHHHTCCSEEEESCSTT
T ss_pred HHHcCCCCEEEEccHHh
Confidence 45567788999999843
No 356
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.16 E-value=0.052 Score=54.14 Aligned_cols=25 Identities=40% Similarity=0.600 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|+|++|+||||+++.++....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987664
No 357
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.15 E-value=0.048 Score=59.63 Aligned_cols=47 Identities=26% Similarity=0.291 Sum_probs=36.7
Q ss_pred CCchhHHHHHHHHHHHhcC--------------CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 10 GIFESRKSIVKQLLEALNN--------------ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 10 ~~~vgR~~~l~~l~~~l~~--------------~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..++|.++..+.+...+.. ...+-|.++|++|+|||++|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4678989888888665521 1235688999999999999999998875
No 358
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.10 E-value=0.087 Score=54.88 Aligned_cols=28 Identities=36% Similarity=0.551 Sum_probs=24.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
...+|+|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3579999999999999999999987763
No 359
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.09 E-value=0.14 Score=49.44 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|+|.|+.|+||||+++.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998774
No 360
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.06 E-value=0.11 Score=54.52 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 28 NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 28 ~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
....++|+|+|-||+||||+|.+++...... -..|+-+++...
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~--G~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSIL--GKRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHC--CCeEEEEeCCCC
Confidence 4457899999999999999999999988743 446888887643
No 361
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.03 E-value=0.061 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+|+|.|+.|+|||||++.++...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34789999999999999999998865
No 362
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.00 E-value=0.044 Score=54.24 Aligned_cols=25 Identities=36% Similarity=0.635 Sum_probs=22.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|+|++|+|||||++.++...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3689999999999999999998755
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.97 E-value=0.063 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998764
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=92.94 E-value=0.064 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.281 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|+.|+||||+|+.+++...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 365
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.92 E-value=0.48 Score=50.05 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=31.9
Q ss_pred HHHHhc-CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 22 LLEALN-NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 22 l~~~l~-~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
.++.+. -...+.++|.|++|+|||+|+..+++....+..--.++++.+.
T Consensus 165 aID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIG 214 (427)
T 3l0o_A 165 LIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLID 214 (427)
T ss_dssp HHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECS
T ss_pred hhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEec
Confidence 444443 2334788999999999999999999876533221123455444
No 366
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.91 E-value=0.15 Score=50.24 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 19 VKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 19 l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
+..+..-.......+|.|.|+.|+||||+++.+++....
T Consensus 9 ~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 9 MGTLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ----------CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 333444444455689999999999999999999998874
No 367
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.85 E-value=0.22 Score=63.55 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=54.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc-----cchHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG-----IEESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 105 (979)
..+|.|.|++|+||||||.+++..... .-..++|++........ .++.++.+... ......+....++
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~--~g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~ 804 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 804 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHH--cCCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHH
Confidence 368999999999999999999998763 23367888776665542 26666654221 1111222222222
Q ss_pred -HhcCCeEEEEEcCCCCc
Q 002024 106 -IKMEKRILVILDDVWER 122 (979)
Q Consensus 106 -l~~~~~~LlvlDd~~~~ 122 (979)
....+.-++|+|.+...
T Consensus 805 lv~~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 805 LARSGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HHHHTCCSEEEESCSTTC
T ss_pred HHHccCCCEEEEechhhh
Confidence 22356678999998754
No 368
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.84 E-value=0.064 Score=52.31 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|+.|+||||+|+.+++...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 369
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.83 E-value=0.057 Score=52.83 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGK 53 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~ 53 (979)
..|+|+|+.|+||||+++.++.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999987
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.81 E-value=0.064 Score=54.44 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|++|+||||+++.+++...
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999997764
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.81 E-value=0.069 Score=54.29 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.8
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
....+|+|.|++|+||||+|+.+++...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456899999999999999999988754
No 372
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.75 E-value=0.067 Score=52.63 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|+.|+||||+++.+++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998875
No 373
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.74 E-value=0.068 Score=53.00 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...|+|.|+.|+||||+|+.+++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999998764
No 374
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.73 E-value=0.071 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.3
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
...+|+|.|+.|+||||+++.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3578999999999999999999875
No 375
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.72 E-value=0.093 Score=51.71 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|+.|+||||+|+.+++...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999999875
No 376
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.72 E-value=0.068 Score=52.40 Aligned_cols=25 Identities=44% Similarity=0.715 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+|+|+|++|+||||+|+.++...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999997543
No 377
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.69 E-value=0.072 Score=54.40 Aligned_cols=26 Identities=38% Similarity=0.666 Sum_probs=23.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|.|.|++|+||||+|+.++....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998754
No 378
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.67 E-value=0.061 Score=50.60 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=23.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
++++|+|++|+|||||++.++.-...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 58999999999999999999887764
No 379
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.67 E-value=0.069 Score=52.77 Aligned_cols=24 Identities=38% Similarity=0.470 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 380
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.66 E-value=0.32 Score=53.31 Aligned_cols=90 Identities=21% Similarity=0.216 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCc--------------ccccc-
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLT--------------ICGIE- 94 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~~- 94 (979)
.+.++|.|.+|+|||+|+..+++.... .+.+.++++-+.... ...++.+++...=..+ ..+.+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~ 243 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPP 243 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCH
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCH
Confidence 468899999999999999999987642 234667777766543 4556666665431111 00011
Q ss_pred -----hHHHHHHHHHHHhc--CCeEEEEEcCCCC
Q 002024 95 -----ESARAGYLWERIKM--EKRILVILDDVWE 121 (979)
Q Consensus 95 -----~~~~~~~~~~~l~~--~~~~LlvlDd~~~ 121 (979)
....+..+.+.+.+ ++..|+++||+..
T Consensus 244 ~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 244 GARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 11223334455554 7899999999843
No 381
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.62 E-value=0.045 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|.|.|+.|+||||+|+.+++...
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999987764
No 382
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.58 E-value=0.073 Score=51.24 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.0
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+|+|+|+.|+||||+++.+++..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998764
No 383
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.57 E-value=0.048 Score=53.32 Aligned_cols=36 Identities=28% Similarity=0.280 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 13 ESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 13 vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
+|....++.+ .. ..+++|.|++|+|||||++.++--
T Consensus 10 ~g~~~~l~~i----~~--Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 10 LGQKHYVDAI----DT--NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHHHHHHHH----HH--CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred HhHHHHHHhc----cC--CCEEEEECCCCCCHHHHHHHHhcC
Confidence 3555555554 22 258999999999999999999876
No 384
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.56 E-value=0.1 Score=51.27 Aligned_cols=28 Identities=36% Similarity=0.443 Sum_probs=24.5
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
....+|.|.|+.|+||||+++.++....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457899999999999999999998775
No 385
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.55 E-value=0.069 Score=52.33 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGK 53 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~ 53 (979)
.+|+|.|+.|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999975
No 386
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.50 E-value=0.12 Score=48.61 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=23.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+++.|.|++|+|||||++.+.....
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 47899999999999999999998765
No 387
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.46 E-value=0.25 Score=55.22 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEE
Q 002024 14 SRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMA 67 (979)
Q Consensus 14 gR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~ 67 (979)
+..+.+..+...+..++ +.+.|.|++|+|||+++..++........ ..++.+
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~ 80 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGE-TGIILA 80 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEE
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEe
Confidence 56677777777776544 38889999999999999999988764332 334444
No 388
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.42 E-value=0.26 Score=52.82 Aligned_cols=48 Identities=33% Similarity=0.482 Sum_probs=32.8
Q ss_pred HHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe
Q 002024 20 KQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV 69 (979)
Q Consensus 20 ~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~ 69 (979)
.++.+.+. .....+|+|+|.+|+||||++..++...... ...+.-+++
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~--g~kV~vi~~ 115 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER--GHRVAVLAV 115 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEE
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC--CCceEEEec
Confidence 33444443 3456789999999999999999998877532 233444444
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.41 E-value=0.092 Score=50.04 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=23.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..+|+|.|+.|+||||+++.++.....
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 468999999999999999999987643
No 390
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.40 E-value=0.046 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.601 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|+|.|+.|+||||+|+.++....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998875
No 391
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.40 E-value=0.069 Score=53.07 Aligned_cols=26 Identities=23% Similarity=0.198 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...|.|.|+.|+||||+++.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999998775
No 392
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.35 E-value=0.22 Score=52.92 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..+++|+|++|+||||+++.++.....
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 478999999999999999999988763
No 393
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.33 E-value=0.074 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|+|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 394
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=92.31 E-value=0.17 Score=53.45 Aligned_cols=47 Identities=28% Similarity=0.341 Sum_probs=36.8
Q ss_pred HhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC
Q 002024 25 ALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL 73 (979)
Q Consensus 25 ~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~ 73 (979)
.+.....+++.+.|-||+||||+|.+++.... .....|.-++.....
T Consensus 10 ~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la--~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 10 ILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLA--KVRRSVLLLSTDPAH 56 (334)
T ss_dssp HHHCTTCCEEEEECSTTSSHHHHHHHHHHHHT--TSSSCEEEEECCSSC
T ss_pred HhcCCCeEEEEEeCCCCccHHHHHHHHHHHHH--hCCCcEEEEECCCCC
Confidence 33455568889999999999999999999887 345678888877544
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.28 E-value=0.13 Score=53.65 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=24.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..+++|+|++|+||||+++.++.....
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999988763
No 396
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.27 E-value=0.11 Score=52.64 Aligned_cols=26 Identities=38% Similarity=0.414 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...|.|.|++|+||||+|+.++....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47889999999999999999988764
No 397
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.27 E-value=0.071 Score=53.18 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..|+|.|+.|+||||+|+.+++...
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999987653
No 398
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.20 E-value=0.068 Score=53.45 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999643
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.18 E-value=0.088 Score=52.17 Aligned_cols=25 Identities=20% Similarity=0.521 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|++|+||||+++.++....
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998764
No 400
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.17 E-value=0.086 Score=55.29 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+|+|.|++|+||||||+.++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998764
No 401
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.16 E-value=0.2 Score=48.90 Aligned_cols=37 Identities=24% Similarity=0.151 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEecc
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSH 71 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~ 71 (979)
.|++.|.||+||||+|..++.....+ ...+.++++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~--G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ--GVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC--CCCEEEEEeCC
Confidence 47899999999999999999988743 23455555544
No 402
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.14 E-value=0.081 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++|+|.||.|+|||+||..+++...
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCc
Confidence 6889999999999999999987653
No 403
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.12 E-value=0.41 Score=52.26 Aligned_cols=90 Identities=21% Similarity=0.208 Sum_probs=55.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCC-CHHHHHHHHHHHhCCc-------------ccccch-
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNL-SIVKIQGEIAAVLGLT-------------ICGIEE- 95 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~~~~~i~~~l~~~-------------~~~~~~- 95 (979)
.+.++|.|.+|+|||+|+..+++.... .+-+.++++-+.... ...++.+++...=..+ ..+.+.
T Consensus 153 GQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~ 231 (482)
T 2ck3_D 153 GGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPG 231 (482)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHH
T ss_pred CCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHH
Confidence 468899999999999999999987642 233556676666542 3456666665442221 001111
Q ss_pred -----HHHHHHHHHHHh--cCCeEEEEEcCCCC
Q 002024 96 -----SARAGYLWERIK--MEKRILVILDDVWE 121 (979)
Q Consensus 96 -----~~~~~~~~~~l~--~~~~~LlvlDd~~~ 121 (979)
...+..+.+.+. +++..|+++||+..
T Consensus 232 ~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 232 ARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111233344444 48999999999743
No 404
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.11 E-value=0.069 Score=51.70 Aligned_cols=111 Identities=15% Similarity=0.136 Sum_probs=53.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEK 110 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 110 (979)
..+..++|+-|.||||.+...+.+...+ ...++.+.... +.+.-...+++.++.......... ...+++.+. ++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~--d~R~ge~~i~s~~g~~~~a~~~~~-~~~~~~~~~-~~ 101 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCI--DNRYSEEDVVSHNGLKVKAVPVSA-SKDIFKHIT-EE 101 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC-------------------CCEEECSS-GGGGGGGCC-SS
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEecc--CCcchHHHHHhhcCCeeEEeecCC-HHHHHHHHh-cC
Confidence 4688899999999999999999888633 33344443221 112222345555544322111000 012222221 23
Q ss_pred eEEEEEcCCCCc--cchhhhcCCCCCCCCCcEEEEEcCChhh
Q 002024 111 RILVILDDVWER--IDLQKVGIPLGEDHEGCNILLTSRSQGV 150 (979)
Q Consensus 111 ~~LlvlDd~~~~--~~~~~l~~~~~~~~~~~~iiiTtr~~~~ 150 (979)
.-+|++|+++-. ++++.+. .+.+ .|..||+|.++.++
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~DF 140 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQDF 140 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSBCT
T ss_pred CCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEeccccc
Confidence 348999998653 3333222 1112 37789999996644
No 405
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.10 E-value=0.078 Score=50.86 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3688999999999999999988764
No 406
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.04 E-value=0.4 Score=54.22 Aligned_cols=56 Identities=14% Similarity=0.080 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH-HHhCCc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA-AVLGLT 89 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~-~~l~~~ 89 (979)
..++.|.|++|+|||++|.+++.....+ .-..++|++.. .+..++...+. ...+.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E--~s~~~l~~r~~~~~~~~~ 298 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLE--ESVEETAEDLIGLHNRVR 298 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESS--SCHHHHHHHHHHHHTTSC
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEecc--CCHHHHHHHHHHHHcCCC
Confidence 3688999999999999999999887632 12357777654 45566666554 344443
No 407
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.04 E-value=0.081 Score=53.01 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
.+++|.|++|+|||||++.++--
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999754
No 408
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.01 E-value=0.51 Score=52.49 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=35.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEI 82 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i 82 (979)
..++.|.|++|+||||+|.+++....... -..|+|++.. .+..++...+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~ 251 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRM 251 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHH
Confidence 46899999999999999999998876322 2357777654 3445555554
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=91.99 E-value=0.26 Score=51.42 Aligned_cols=51 Identities=20% Similarity=0.245 Sum_probs=34.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
..+++|.|++|+|||||++.++....... -..++|+.... +..++.+.+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 36899999999999999999998776331 22466665432 34444444433
No 410
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.94 E-value=0.33 Score=62.72 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=55.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccc-----cchHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICG-----IEESARAGYLWER 105 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~~~~ 105 (979)
.+++.|+|++|+|||+||.+++..... .-..++|++.....+.. .++.++.+... ......+....+.
T Consensus 383 G~lilI~G~pGsGKTtLaLqia~~~a~--~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~~ 455 (2050)
T 3cmu_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDA 455 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHHH
Confidence 468999999999999999999988763 23468898887776653 26667654221 1122223333333
Q ss_pred H-hcCCeEEEEEcCCCC
Q 002024 106 I-KMEKRILVILDDVWE 121 (979)
Q Consensus 106 l-~~~~~~LlvlDd~~~ 121 (979)
+ .....-++|+|.+..
T Consensus 456 lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 456 LARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHTCCSEEEESCGGG
T ss_pred HHHhcCCcEEEECCHHH
Confidence 3 245667899999854
No 411
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.91 E-value=0.34 Score=47.67 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
-.++|.|++|+||||+|+.+++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cceeeECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999998774
No 412
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=91.88 E-value=0.089 Score=51.37 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.+|+|.|+.|+||||+++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998776
No 413
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.87 E-value=0.06 Score=53.91 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=16.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH-HHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIG-KQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~-~~~ 55 (979)
..+++|+|++|+|||||++.++ ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999998 654
No 414
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.85 E-value=0.52 Score=52.03 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=35.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
..++.|.|.+|+|||++|.+++.....+ -..++|++.. .+..++...+.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlE--ms~~ql~~R~~ 245 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLE--MGKKENIKRLI 245 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSS--SCTTHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECC--CCHHHHHHHHH
Confidence 3689999999999999999999987643 3457777654 33444444443
No 415
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.80 E-value=0.26 Score=54.25 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+++|+|++|+||||+++.++....
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 357999999999999999999998776
No 416
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.76 E-value=0.12 Score=53.24 Aligned_cols=27 Identities=37% Similarity=0.315 Sum_probs=23.5
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..++|.|.||.|+|||+||..+++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 347889999999999999999997753
No 417
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.75 E-value=0.077 Score=52.65 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=21.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999643
No 418
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.74 E-value=0.32 Score=47.55 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..+|.|.|+.|+||||+++.+++....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999999998864
No 419
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.67 E-value=0.1 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.382 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++|.|+|+.|+||||||+.++....
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5889999999999999999998763
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.67 E-value=0.21 Score=49.70 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=24.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..+|+|.|+.|+||||+++.+++....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 478999999999999999999998874
No 421
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.62 E-value=0.11 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+|+|.|+.|+||||+++.++....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988764
No 422
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.58 E-value=0.11 Score=51.55 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999988763
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.57 E-value=0.089 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=22.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|+|++|+|||||++.++--.
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997654
No 424
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=91.50 E-value=0.094 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..|+|+|++|+||||+++.++....
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999998765
No 425
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=91.48 E-value=0.23 Score=52.71 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=36.4
Q ss_pred HHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 24 EALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 24 ~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
..+.....+++.+.|-||+||||+|.+++........-..|.-++....
T Consensus 11 ~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 11 SIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp HHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred HHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 3444556689999999999999999999988762123456777877644
No 426
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.45 E-value=0.091 Score=53.52 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999654
No 427
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.43 E-value=0.11 Score=51.06 Aligned_cols=24 Identities=33% Similarity=0.166 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.|+|.|+.|+||||+|+.+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998763
No 428
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.38 E-value=0.12 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..|.|.|+.|+||||+|+.+++...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4688999999999999999998774
No 429
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.31 E-value=0.096 Score=53.24 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcC
Confidence 468999999999999999999643
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.26 E-value=0.092 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
++|+|.||.|+|||+|+..+++..
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 689999999999999999998765
No 431
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.25 E-value=0.067 Score=55.46 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|++|+||||+|+.+++...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999988654
No 432
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=91.24 E-value=1.2 Score=47.24 Aligned_cols=111 Identities=10% Similarity=0.116 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCcccccchHHHHHHHHHHHhcCCe
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGIEESARAGYLWERIKMEKR 111 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 111 (979)
.+++|.|+.|+||||+++.++....... -..++.+........... ... +...............+...+. ..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~-~~~i~t~ed~~e~~~~~~-~~~---v~q~~~~~~~~~~~~~La~aL~-~~P 197 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTK-YHHILTIEDPIEFVHESK-KCL---VNQREVHRDTLGFSEALRSALR-EDP 197 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHC-CCEEEEEESSCCSCCCCS-SSE---EEEEEBTTTBSCHHHHHHHHTT-SCC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCC-CcEEEEccCcHHhhhhcc-ccc---eeeeeeccccCCHHHHHHHHhh-hCc
Confidence 5999999999999999999987665321 122222221111100000 000 0000000011112234444554 566
Q ss_pred EEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChhhh
Q 002024 112 ILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQGVC 151 (979)
Q Consensus 112 ~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~~~ 151 (979)
=++++|+..+.+.++.+... ...|..|++|+...+..
T Consensus 198 dvillDEp~d~e~~~~~~~~---~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 198 DIILVGEMRDLETIRLALTA---AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SEEEESCCCSHHHHHHHHHH---HHTTCEEEEEESCSSHH
T ss_pred CEEecCCCCCHHHHHHHHHH---HhcCCEEEEEEccChHH
Confidence 67789999765544433222 12466688888776544
No 433
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.23 E-value=0.14 Score=51.29 Aligned_cols=26 Identities=31% Similarity=0.244 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...|.|.|+.|+||||+|+.+++...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998874
No 434
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.21 E-value=0.13 Score=50.80 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGK 53 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~ 53 (979)
.+|+|.|+.|+||||+++.++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999975
No 435
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.21 E-value=0.13 Score=53.20 Aligned_cols=22 Identities=36% Similarity=0.786 Sum_probs=20.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIG 52 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~ 52 (979)
..+|+|.|+.|+||||+|+.++
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999998
No 436
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.19 E-value=0.12 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999764
No 437
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.19 E-value=0.11 Score=52.27 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|+|++|+|||||++.++--
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999754
No 438
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.15 E-value=0.093 Score=49.94 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.+.|.|.|++|+|||+||.+++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3678899999999999999998764
No 439
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.12 E-value=0.54 Score=54.18 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...++|+|++|+|||||++.++.-.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4689999999999999999997643
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.08 E-value=0.097 Score=53.58 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 368999999999999999998653
No 441
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.08 E-value=0.27 Score=50.43 Aligned_cols=39 Identities=18% Similarity=0.391 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
++|+|.|-||+||||+|.+++..... ....|..++....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~--~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHA--MGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHH--CCCcEEEEcCCCC
Confidence 57888999999999999999998873 3456778877643
No 442
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=91.06 E-value=0.5 Score=47.20 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
+.+.|.|+.|+|||+++..+.-+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHHhc
Confidence 67889999999999877666543
No 443
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.05 E-value=0.1 Score=53.26 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++--.
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999997543
No 444
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.04 E-value=0.11 Score=52.70 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999754
No 445
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=91.04 E-value=0.25 Score=51.21 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=32.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
.++|+|.|-||+||||+|.+++.....+ -..|..+++...
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~--G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEM--GKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence 4788889999999999999999988733 346777776643
No 446
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.04 E-value=0.12 Score=52.24 Aligned_cols=24 Identities=38% Similarity=0.486 Sum_probs=21.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999863
No 447
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.03 E-value=0.087 Score=51.65 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
.+++|.|++|+|||||++.++--
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68899999999999999999654
No 448
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.98 E-value=1 Score=49.89 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=37.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAA 84 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~ 84 (979)
..++.|.|++|+|||++|.+++....... -..++|++.. .+..++...+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~ 250 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMC 250 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHH
Confidence 36889999999999999999998876322 2357776654 455666666543
No 449
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.95 E-value=0.11 Score=52.26 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999653
No 450
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.93 E-value=0.15 Score=51.88 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.6
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...+++|+|+.|+||||+++.++....
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 347999999999999999999987654
No 451
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.90 E-value=0.26 Score=49.61 Aligned_cols=36 Identities=28% Similarity=0.328 Sum_probs=27.3
Q ss_pred HHHHHHhcCC-C-ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 20 KQLLEALNNE-N-VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 20 ~~l~~~l~~~-~-~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+..++... + ...|.++||+|+|||.+|.++++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3355555543 2 3578999999999999999999864
No 452
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=90.86 E-value=0.11 Score=51.73 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++--.
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997654
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.85 E-value=0.11 Score=52.81 Aligned_cols=24 Identities=33% Similarity=0.315 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999654
No 454
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.82 E-value=0.11 Score=52.69 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|+|++|+|||||++.++--
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 468999999999999999999754
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.79 E-value=0.11 Score=52.31 Aligned_cols=25 Identities=44% Similarity=0.606 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++--.
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3689999999999999999996543
No 456
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.73 E-value=0.18 Score=48.31 Aligned_cols=57 Identities=11% Similarity=0.150 Sum_probs=26.4
Q ss_pred CcCCCEEEeCCCCCCCC------ccccCCcCCcEEEcccCcCc-----ccchhhccCccccEEecCCC
Q 002024 431 LVDLRTLRLEDCYLGDL------SVIGELSNLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHC 487 (979)
Q Consensus 431 l~~L~~L~L~~~~l~~l------~~i~~L~~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c 487 (979)
-..|+.|+|++|.+.+- ..+..=+.|++|+|++|.|. .+-+.+..=+.|++|+++++
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 34455555555544322 22333344555555555544 22233444445666666543
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.68 E-value=0.15 Score=49.75 Aligned_cols=45 Identities=16% Similarity=0.038 Sum_probs=21.2
Q ss_pred CchhHHHHHHHHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 11 IFESRKSIVKQLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 11 ~~vgR~~~l~~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.--++....+.+.........-.|+|+|.+|+|||+|+..+....
T Consensus 10 ~~~~~~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 10 HSSGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp --------------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccCCcccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 334445555555454444444567899999999999999998643
No 458
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.65 E-value=0.23 Score=51.21 Aligned_cols=42 Identities=24% Similarity=0.305 Sum_probs=30.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccC--------CCeEEEEEeccC
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKR--------YDTVVMAVVSHN 72 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~--------f~~~~~~~~~~~ 72 (979)
..++.|+|++|+|||||+..++........ -..++|++....
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 368999999999999999999876543210 134667765543
No 459
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.65 E-value=0.12 Score=52.86 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|+|++|+|||||++.++--
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999754
No 460
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.65 E-value=0.15 Score=54.51 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
++|+|.||.|+|||+||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 6889999999999999999998764
No 461
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.65 E-value=0.14 Score=52.96 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+++|+|++|+|||||++.++.-.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34789999999999999999998765
No 462
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.58 E-value=0.12 Score=52.67 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 468999999999999999998654
No 463
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=90.57 E-value=0.41 Score=46.78 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHhhhc
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQVQES 58 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~~~~ 58 (979)
.+|.|-|+.|+||||+++.+++.....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999988743
No 464
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.55 E-value=0.24 Score=48.46 Aligned_cols=107 Identities=8% Similarity=-0.056 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHHHHhCCccccc--chHHHHHHHHHHHhc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIAAVLGLTICGI--EESARAGYLWERIKM 108 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~~~~~l~~ 108 (979)
..+..++|+-|.||||-+...+++.. .+-..++.+...... +.- ..+++.++...... ... ..+++..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~~D~--Ryg-~~i~sr~G~~~~a~~i~~~---~di~~~~-- 88 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYAKDT--RYS-SSFCTHDRNTMEALPACLL---RDVAQEA-- 88 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEETTCC--CC------------CEEEEESSG---GGGHHHH--
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeecCCc--cch-HHHHhhcCCeeEEEecCCH---HHHHHHh--
Confidence 47888999999999998888888776 333334444422211 111 24555555442221 111 1123322
Q ss_pred CCeEEEEEcCCCCccchhhhcCCCCCCCCCcEEEEEcCChh
Q 002024 109 EKRILVILDDVWERIDLQKVGIPLGEDHEGCNILLTSRSQG 149 (979)
Q Consensus 109 ~~~~LlvlDd~~~~~~~~~l~~~~~~~~~~~~iiiTtr~~~ 149 (979)
++--+|++|+++-......+...+.. .|..||+|.++.+
T Consensus 89 ~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~D 127 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDGT 127 (234)
T ss_dssp TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSBC
T ss_pred ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEecccc
Confidence 33348999998543333333222211 5778999998843
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.51 E-value=0.12 Score=52.01 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++--.
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999997544
No 466
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.49 E-value=0.25 Score=53.59 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=53.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccC-CC-eEEEEEeccC-CCHHHHHHHHHHH--hCCc-----ccccchH----
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKR-YD-TVVMAVVSHN-LSIVKIQGEIAAV--LGLT-----ICGIEES---- 96 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~-f~-~~~~~~~~~~-~~~~~~~~~i~~~--l~~~-----~~~~~~~---- 96 (979)
.+.++|.|.+|+|||+|+.++++....... -+ .++++-+... ..+.++.+++... +... ..+.+..
T Consensus 151 GQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~ 230 (465)
T 3vr4_D 151 GQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIA 230 (465)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHH
Confidence 356789999999999999999887653111 11 4556666544 3455666655433 1110 1111111
Q ss_pred --HHHHHHHHHHh--cCCeEEEEEcCCC
Q 002024 97 --ARAGYLWERIK--MEKRILVILDDVW 120 (979)
Q Consensus 97 --~~~~~~~~~l~--~~~~~LlvlDd~~ 120 (979)
..+..+.+.+. .++..|+++||+.
T Consensus 231 a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 231 TPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11233455555 3899999999974
No 467
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.33 E-value=0.13 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.8
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++--.
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3689999999999999999997643
No 468
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.30 E-value=0.25 Score=53.96 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=53.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccC--CCeEEEEEeccC-CCHHHHHHHHHHHhCCc-------ccccch-----
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKR--YDTVVMAVVSHN-LSIVKIQGEIAAVLGLT-------ICGIEE----- 95 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~--f~~~~~~~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~----- 95 (979)
.+.++|.|.+|+|||+|+.++++....... -+.++++-+... ....++.+++...=..+ ..+.+.
T Consensus 152 GQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~ 231 (469)
T 2c61_A 152 GQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIV 231 (469)
T ss_dssp TCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHH
Confidence 367789999999999999999988764322 134666666544 33456666654431111 111111
Q ss_pred -HHHHHHHHHHHh--cCCeEEEEEcCC
Q 002024 96 -SARAGYLWERIK--MEKRILVILDDV 119 (979)
Q Consensus 96 -~~~~~~~~~~l~--~~~~~LlvlDd~ 119 (979)
...+..+.+.+. +++..|+++||+
T Consensus 232 ~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 232 TPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 111233344444 589999999996
No 469
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.28 E-value=0.45 Score=45.86 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHHHHHHHHH
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIVKIQGEIA 83 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~i~ 83 (979)
+|+|-|+-|+||||.++.+++....+ ...+++..-.......+..+.++
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~--g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR--GKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCCcHHHHHHHHh
Confidence 57899999999999999999988743 22344443333223334444433
No 470
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=90.26 E-value=0.42 Score=47.46 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=27.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEE
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMA 67 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~ 67 (979)
..+|.|.|+.|+||||+++.+++..... .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 3689999999999999999999988643 34434333
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.22 E-value=0.22 Score=54.71 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.9
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+|.|+|++|+||||+|+.++++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998765
No 472
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.20 E-value=0.13 Score=52.77 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++--.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3689999999999999999996543
No 473
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.17 E-value=0.37 Score=42.81 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=16.6
Q ss_pred cccEEecCCCCCccccCcchhccCcCCcEEEcccC
Q 002024 478 HLWLLDLDHCRQLALIPHGVISQLDKLEEFYMWNT 512 (979)
Q Consensus 478 ~L~~L~l~~c~~~~~~p~~~l~~L~~L~~L~l~~~ 512 (979)
+|++|++++| .+..+|.+++..+++|+.|++.+|
T Consensus 32 ~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence 3455555553 244454444455555555555544
No 474
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.93 E-value=0.21 Score=47.82 Aligned_cols=113 Identities=12% Similarity=0.113 Sum_probs=70.6
Q ss_pred cCCcCCCEEEeCCC-CCCCC------ccccCCcCCcEEEcccCcCc-----ccchhhccCccccEEecCCCCCccc----
Q 002024 429 SFLVDLRTLRLEDC-YLGDL------SVIGELSNLEILSLCRSSIK-----EIPETFCRLSHLWLLDLDHCRQLAL---- 492 (979)
Q Consensus 429 ~~l~~L~~L~L~~~-~l~~l------~~i~~L~~L~~L~Ls~~~l~-----~lp~~i~~L~~L~~L~l~~c~~~~~---- 492 (979)
..-+.|+.|+|+++ .+.+- ..+..=+.|++|+|++|.+. .+-+.+..-+.|++|+++.|.....
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34567888888875 66542 45666688999999999886 3445566678899999999763222
Q ss_pred cCcchhccCcCCcEEEcccCcc-cccccc-ccchhccccccccceecccccC
Q 002024 493 IPHGVISQLDKLEEFYMWNTFK-NWDCET-NAKVVELQALTRLTNLMFHFPQ 542 (979)
Q Consensus 493 ~p~~~l~~L~~L~~L~l~~~~~-~~~~~~-~~~~~~l~~l~~L~~L~l~~~~ 542 (979)
+... +..=+.|++|+++++.. .....+ .+....+..-+.|+.|+++++.
T Consensus 118 la~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 1111 33345699999976532 111111 1223445666777777776543
No 475
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=89.90 E-value=0.65 Score=50.09 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=33.2
Q ss_pred CCceEEEEEc-CCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 29 ENVSVIGLCG-MGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 29 ~~~~~i~i~G-~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
...++|+|+| -||+||||+|..++..... ....|+.+++...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~--~g~rVlliD~D~~ 183 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHAN--MGKKVFYLNIEQC 183 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHH--HTCCEEEEECCTT
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHh--CCCCEEEEECCCC
Confidence 3468898886 8899999999999998764 3456888887733
No 476
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.88 E-value=0.34 Score=51.93 Aligned_cols=27 Identities=26% Similarity=0.100 Sum_probs=23.3
Q ss_pred CCceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 29 ENVSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 29 ~~~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...+.++|+|++|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 345799999999999999999999754
No 477
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=89.87 E-value=0.19 Score=52.59 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHH
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
.+|.|.|++|+||||+|+.+++.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 478
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.87 E-value=0.18 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
-.|+|.|++|+|||||++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468899999999999999998754
No 479
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.84 E-value=0.17 Score=53.60 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||.+.++--.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 4689999999999999999997543
No 480
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=89.68 E-value=0.26 Score=51.41 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 32 SVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 32 ~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.+++|.|++|+|||||++.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 688999999999999999998 44
No 481
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.64 E-value=0.31 Score=54.42 Aligned_cols=45 Identities=20% Similarity=0.051 Sum_probs=33.7
Q ss_pred chhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 12 FESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 12 ~vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
...|.+..+.+.+... .....+|.+.|++|+||||+|+.+++...
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3455555666666552 22346899999999999999999999986
No 482
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=89.61 E-value=0.35 Score=47.74 Aligned_cols=27 Identities=33% Similarity=0.405 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQE 57 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~ 57 (979)
..+|.|.|+.|+||||+++.+++....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 368999999999999999999998864
No 483
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.57 E-value=0.3 Score=55.27 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHhc--CCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 13 ESRKSIVKQLLEALN--NENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 13 vgR~~~l~~l~~~l~--~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
+.|.+....+.+... -....+|+|+|++|+|||||++.++....
T Consensus 349 f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 349 YSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp TSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 444444455555431 12347899999999999999999998876
No 484
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.52 E-value=0.24 Score=53.66 Aligned_cols=90 Identities=19% Similarity=0.162 Sum_probs=52.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhc--------cCCC-eEEEEEeccC-CCHHHHHHHHHHH--hCC-----ccccc
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQES--------KRYD-TVVMAVVSHN-LSIVKIQGEIAAV--LGL-----TICGI 93 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~--------~~f~-~~~~~~~~~~-~~~~~~~~~i~~~--l~~-----~~~~~ 93 (979)
.+.++|.|.+|+|||+|+.++++..... ++-+ .++++-+... ..+.++.+++... +.. ...+.
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3677899999999999999998876531 1112 4556666544 3345555554332 110 01111
Q ss_pred ch------HHHHHHHHHHHh--cCCeEEEEEcCCC
Q 002024 94 EE------SARAGYLWERIK--MEKRILVILDDVW 120 (979)
Q Consensus 94 ~~------~~~~~~~~~~l~--~~~~~LlvlDd~~ 120 (979)
+. ...+..+.+.+. .++..|+++||+.
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlT 261 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDMT 261 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11 111233455555 3899999999974
No 485
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=89.49 E-value=0.56 Score=51.09 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=27.0
Q ss_pred HHHHHhcCCCceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 21 QLLEALNNENVSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 21 ~l~~~l~~~~~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
.+.+.+. ....+++|.|+.|+||||+++.++....
T Consensus 158 ~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 158 NFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp HHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred HHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3344443 3457999999999999999999988764
No 486
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=89.47 E-value=0.3 Score=51.57 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=33.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSIV 76 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 76 (979)
.+++.+.|-||+||||+|.+++..... ....|.-++.....+..
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~--~G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMAR--SGKKTLVISTDPAHSLS 57 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEECCSSCCHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHH--CCCcEEEEeCCCCcCHH
Confidence 367788899999999999999998873 35568888876654443
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.46 E-value=0.45 Score=54.09 Aligned_cols=37 Identities=22% Similarity=0.259 Sum_probs=28.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEe
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVV 69 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~ 69 (979)
..+++|.|++|+|||||++.++...... -..++++..
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~--G~~vi~~~~ 317 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACAN--KERAILFAY 317 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTT--TCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhC--CCCEEEEEE
Confidence 3689999999999999999999876532 224555544
No 488
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=89.44 E-value=0.6 Score=47.69 Aligned_cols=55 Identities=13% Similarity=0.148 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhc----CCCceEEEEEcC-CCCcHHHHHHHHHHHhhhccCCCeEEEEEeccC
Q 002024 16 KSIVKQLLEALN----NENVSVIGLCGM-GGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHN 72 (979)
Q Consensus 16 ~~~l~~l~~~l~----~~~~~~i~i~G~-~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~ 72 (979)
.+.+..|...+. +...++|.|+|. +|+||||+|..++..... ....|+.|++...
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~--~G~rVLLID~D~~ 122 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQ--AGYKTLIVDGDMR 122 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCSS
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence 355555655553 345689999976 789999999999998873 3457888887643
No 489
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.43 E-value=0.23 Score=54.52 Aligned_cols=38 Identities=29% Similarity=0.361 Sum_probs=29.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEec
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVS 70 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~ 70 (979)
.++|.|+|++|+||||++..++.....+ -..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEecc
Confidence 3689999999999999999999887633 2346666553
No 490
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.38 E-value=0.24 Score=49.58 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHhh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQVQ 56 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~~ 56 (979)
..+|+|.|+.|+||||+++.++....
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999987664
No 491
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.33 E-value=0.17 Score=52.15 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHHh
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
..+++|.|++|+|||||++.++--.
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4689999999999999999997644
No 492
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=89.18 E-value=0.47 Score=47.88 Aligned_cols=40 Identities=30% Similarity=0.477 Sum_probs=31.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhhhccCCCeEEEEEeccCCCH
Q 002024 34 IGLCGMGGVGKTTLAKEIGKQVQESKRYDTVVMAVVSHNLSI 75 (979)
Q Consensus 34 i~i~G~~GiGKT~La~~~~~~~~~~~~f~~~~~~~~~~~~~~ 75 (979)
|+|.|-||+||||+|.+++...... -..|.-++.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASD--YDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTT--CSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCcCh
Confidence 6679999999999999999998743 367888887665443
No 493
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.17 E-value=0.17 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGK 53 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~ 53 (979)
..+++|.|++|+|||||++.++-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999963
No 494
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=89.14 E-value=0.2 Score=51.18 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 002024 33 VIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 33 ~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
.++|+|++|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 495
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.12 E-value=0.15 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|+|++|+|||||++.++.-
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 468999999999999999998754
No 496
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.12 E-value=0.22 Score=52.92 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||++.++--
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 468999999999999999998753
No 497
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.10 E-value=0.26 Score=53.49 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.1
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGK 53 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~ 53 (979)
..+++|.|++|+|||||.+.++.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999987
No 498
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.08 E-value=0.17 Score=50.52 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=22.1
Q ss_pred CceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 30 NVSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 30 ~~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
...+|+|.|+.|+||||+++.++..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3579999999999999999998764
No 499
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=89.05 E-value=0.1 Score=60.15 Aligned_cols=47 Identities=17% Similarity=0.082 Sum_probs=35.2
Q ss_pred CCCchhHHHHHHHHHHHhcCCCce-----------EEEEEcCCCCcHHHHHHHHHHHh
Q 002024 9 KGIFESRKSIVKQLLEALNNENVS-----------VIGLCGMGGVGKTTLAKEIGKQV 55 (979)
Q Consensus 9 ~~~~vgR~~~l~~l~~~l~~~~~~-----------~i~i~G~~GiGKT~La~~~~~~~ 55 (979)
...++|.++....+...+.++..+ -|.++|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 456789988777776555444211 47799999999999999997654
No 500
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.02 E-value=0.22 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=21.2
Q ss_pred ceEEEEEcCCCCcHHHHHHHHHHH
Q 002024 31 VSVIGLCGMGGVGKTTLAKEIGKQ 54 (979)
Q Consensus 31 ~~~i~i~G~~GiGKT~La~~~~~~ 54 (979)
..+++|.|++|+|||||.+.++--
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 468999999999999999999743
Done!