Query 002025
Match_columns 978
No_of_seqs 359 out of 1526
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002025.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002025hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h1d_A E3 ubiquitin-protein li 100.0 5.7E-91 1.9E-95 794.0 30.3 384 577-978 14-405 (405)
2 1zvd_A SMAD ubiquitination reg 100.0 3.9E-90 1.3E-94 784.5 29.2 370 588-978 3-380 (380)
3 2oni_A E3 ubiquitin-protein li 100.0 1.8E-89 6.1E-94 781.4 27.1 375 577-971 10-392 (392)
4 1nd7_A WW domain-containing pr 100.0 3.9E-88 1.3E-92 767.1 31.9 365 588-973 3-374 (374)
5 3olm_A E3 ubiquitin-protein li 100.0 2.5E-88 8.6E-93 779.5 27.0 370 585-977 51-428 (429)
6 1c4z_A E6AP, ubiquitin-protein 100.0 4.1E-88 1.4E-92 762.4 22.2 346 616-978 6-358 (358)
7 3pt3_A E3 ubiquitin-protein li 100.0 7.1E-36 2.4E-40 284.2 6.8 109 860-977 3-117 (118)
8 2gol_A Matrix protein P17 (MA) 12.0 1.8E+02 0.0062 27.7 3.9 39 98-144 29-86 (133)
9 3b09_A Peptidyl-prolyl CIS-tra 11.0 1.7E+02 0.0058 25.8 3.3 13 791-803 13-25 (88)
10 1l6x_B Minimized B-domain of p 9.0 1.6E+02 0.0055 21.5 1.9 22 882-903 5-28 (34)
No 1
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A
Probab=100.00 E-value=5.7e-91 Score=794.04 Aligned_cols=384 Identities=36% Similarity=0.631 Sum_probs=341.9
Q ss_pred hhhhhcCCcccchhhHHHHHHHHHHHHHHhcCCCCCcceeeEEEeCCchHHHHHHHHhcCCccccCccEEEEEEeccCcc
Q 002025 577 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVE 656 (978)
Q Consensus 577 ~~il~~~Pfl~pf~~Rv~if~~~l~~~r~~~~~~~~~~r~~i~VrR~~ileDa~~~L~~~~~~~lk~~L~V~F~~E~G~~ 656 (978)
.+.+.+-|+ ++|+.|+++|++++.+.+.... ..+.+++|||++|++||++++...++.++|++|+|+|+|
T Consensus 14 ~~~~~~~~~-~~f~~k~~~F~~~l~~~~~~~~----~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g----- 83 (405)
T 3h1d_A 14 LEVLFQGPH-MDFDVKRKYFRQELERLDEGLR----KEDMAVHVRRDHVFEDSYRELHRKSPEEMKNRLYIVFEG----- 83 (405)
T ss_dssp CGGGGCSTT-SCHHHHHHHHHHHHHHHTTTCC----CCEEEEEECGGGHHHHHHHHHTTSCTTGGGSEEEEEETT-----
T ss_pred hHHhhcCCC-cCHHHHHHHHHHHHHhhhcCCC----CCceEEEEeCchHHHHHHHHHHccCHHHhhcceEEEECC-----
Confidence 456777888 5999999999998876544221 245689999999999999999988889999999999998
Q ss_pred cccccCCCchHHHHHHHHHHhhcccCCCceecCC-C-ceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHH
Q 002025 657 EAGIDGGGIFKDFMENITRAAFDVQYGLFKETSD-H-LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATF 734 (978)
Q Consensus 657 E~GiD~GGv~REFf~~l~~e~fdp~~gLF~~t~~-~-~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~ 734 (978)
|+|+|+||++||||+++++++|||++|||..+++ + .++|||.+. ..++++++|+|+|+++|+|||+|+++|++||++
T Consensus 84 E~G~D~GG~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~ 162 (405)
T 3h1d_A 84 EEGQDAGGLLREWYMIISREMFNPMYALFRTSPGDRVTYTINPSSH-ANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRS 162 (405)
T ss_dssp CCSCCCTTHHHHHHHHHHHHTTCGGGTSEEECSSCSSEEEECCC------CHHHHHHHHHHHHHHHHHHTCCCCCEECHH
T ss_pred CCCcCCChhHHHHHHHHHHHHhCCcccceeeccCCceeEeeCCccc-cChhHHHHHHHHhHHHHHHHhCCCccCCCccHH
Confidence 7899999999999999999999999999998753 3 466999875 567899999999999999999999999999999
Q ss_pred HHHhhhccCCCCCCCCCCCHHHHHHHHHHhhccCccccceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHH
Q 002025 735 FLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVS 814 (978)
Q Consensus 735 f~k~Llg~~~tl~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~ 814 (978)
|||+|+|.+++++||+++||++|++|++|++++.+-.+++++|+++.+.+|...++||+|||++|+||++||.+||++++
T Consensus 163 f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~ 242 (405)
T 3h1d_A 163 FYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVSTLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVC 242 (405)
T ss_dssp HHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGGGSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChhhhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHH
Confidence 99999999999999999999999999999986432223578898877788888899999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHhhcccccchhHHhhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcCC
Q 002025 815 NHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFS 894 (978)
Q Consensus 815 ~~~l~~~i~~q~~aF~~Gf~~Vip~~~L~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~fs 894 (978)
+|+++++|++|++||++||++|||.+++++|+|+||+.+|||.+ +||+++|++||.|. ||+++|++|+|||+++++||
T Consensus 243 ~~~l~~~v~~q~~aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~-~id~~dl~~~t~y~-gy~~~~~~i~~FW~v~~~~s 320 (405)
T 3h1d_A 243 QMRMTGAIRKQLAAFLEGFYEIIPKRLISIFTEQELELLISGLP-TIDIDDLKSNTEYH-KYQSNSIQIQWFWRALRSFD 320 (405)
T ss_dssp HHHHTGGGHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCC-CCCHHHHHHTEEEE-SSCTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCCHHHHHHHhCCCC-CCCHHHHHhhCccc-CCCCCCchHhhHHHHHHhCC
Confidence 99999999999999999999999999999999999999999986 59999999999997 89999999999999999999
Q ss_pred HHHHhhcceeecCcCCCCCCCcccCCC-----ceeEeecCCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHH
Q 002025 895 LENQKKFLKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAI 969 (978)
Q Consensus 895 ~eer~kfL~FvTGssRlP~~Gf~~L~p-----~f~I~~~~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI 969 (978)
+|||++||+|||||+|+|++||+.|+| +|+|++.+. ++++||+||||||+|+||+|+|+|+||+||++||
T Consensus 321 ~eer~~fL~FvTGs~rlP~~Gf~~L~~~~~~~~f~i~~~~~-----~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI 395 (405)
T 3h1d_A 321 QADRAKFLQFVTGTSKVPLQGFAALEGMNGIQKFQIHRDDR-----STDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAI 395 (405)
T ss_dssp HHHHHHHHHHHHSSSCCCTTCGGGCBCSSSBCCEEEEEECS-----CTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCCccccccccCCCceEEEeeCCC-----CCCCCccceeccCEeECCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999974 799987653 2479999999999999999999999999999999
Q ss_pred HcC-CCccCC
Q 002025 970 NAE-AGFDLS 978 (978)
Q Consensus 970 ~~~-~GF~LS 978 (978)
+++ +||||.
T Consensus 396 ~e~~~GFgla 405 (405)
T 3h1d_A 396 QEASEGFGLA 405 (405)
T ss_dssp HC--------
T ss_pred HhCCCCcCCC
Confidence 985 799973
No 2
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.9e-90 Score=784.50 Aligned_cols=370 Identities=32% Similarity=0.605 Sum_probs=338.7
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCCcceeeEEEeCCchHHHHHHHHhcCCccccCccEEEEEEeccCcccccccCCCchH
Q 002025 588 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 667 (978)
Q Consensus 588 pf~~Rv~if~~~l~~~r~~~~~~~~~~r~~i~VrR~~ileDa~~~L~~~~~~~lk~~L~V~F~~E~G~~E~GiD~GGv~R 667 (978)
+|+.|+++|++++.+.+.. .+..+++|||++|++||++++...++.++|++|+|+|.| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~l~~~~~~------~~~~~l~V~R~~i~~ds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~r 71 (380)
T 1zvd_A 3 DLVQKLKILRQELSQQQPQ------AGHCRIEVSREEIFEESYRQVMKMRPKDLWKRLMIKFRG-----EEGLDYGGVAR 71 (380)
T ss_dssp SHHHHHHHHHHHHHHHSCS------SCEEEEEECSTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----CCCSCHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCC------CCceEEEEccCCHHHHHHHHHHccCHHHhcCceEEEECC-----CcCcCCCccHH
Confidence 6899999999988764321 234589999999999999999998889999999999998 78999999999
Q ss_pred HHHHHHHHHhhcccCCCceecCCC--ceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCC
Q 002025 668 DFMENITRAAFDVQYGLFKETSDH--LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 745 (978)
Q Consensus 668 EFf~~l~~e~fdp~~gLF~~t~~~--~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~f~k~Llg~~~t 745 (978)
|||+++++++|+|++|||..+.+. .++|||.+. .+++++++|+|+|+++|+|||+|+++|++||++|||+|+|.+++
T Consensus 72 Eff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~l~g~al~~~~~ld~~f~~~f~k~llg~~~~ 150 (380)
T 1zvd_A 72 EWLYLLSHEMLNPYYGLFQYSRDDIYTLQINPDSA-VNPEHLSYFHFVGRIMGMAVFHGHYIDGGFTLPFYKQLLGKSIT 150 (380)
T ss_dssp HHHHHHHHHHTSGGGSSEEEETTEEEEEEECTTGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCcCCCeeccCCCCeeeccCchhh-cChHHHHHHHHhHHHHHHHHhCCceeCCcCCHHHHHHHhCCCCC
Confidence 999999999999999999987543 568999886 46789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhccCcccc-ceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHHHHHHhhhHHH
Q 002025 746 LNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQ 824 (978)
Q Consensus 746 l~DL~~lDp~l~~sL~~Lk~~~~dved-L~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~~~~l~~~i~~ 824 (978)
++||+++||++|++|.+|++ +|+++ ++++|+++.+.+|...++||+|||++|+||++||.+||+++++|++++++++
T Consensus 151 l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~ltF~~~~~~~g~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~ 228 (380)
T 1zvd_A 151 LDDMELVDPDLHNSLVWILE--NDITGVLDHTFCVEHNAYGEIIQHELKPNGKSIPVNEENKKEYVRLYVNWRFLRGIEA 228 (380)
T ss_dssp STTHHHHCHHHHHHHHHHHH--SCCTTTSCCCSEEEEEETTEEEEEESSTTCCCCCCTTTTHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHhCHHHHHHHHHHHh--CCccccccceeEEeeecCCcEeEEecCCCCCCCccccccHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999986 45665 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccccchhHHhhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcCCHHHHhhccee
Q 002025 825 QSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKF 904 (978)
Q Consensus 825 q~~aF~~Gf~~Vip~~~L~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~fs~eer~kfL~F 904 (978)
|++||++||++|||.+++++|+|+||+.++||.+ +||++||++||.|. ||+++|++|+|||+|+++||+|||++||+|
T Consensus 229 q~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~-~id~~dl~~~t~y~-gy~~~~~~i~~FW~vv~~~s~eer~~fL~F 306 (380)
T 1zvd_A 229 QFLALQKGFNEVIPQHLLKTFDEKELELIICGLG-KIDVNDWKVNTRLK-HCTPDSNIVKWFWKAVEFFDEERRARLLQF 306 (380)
T ss_dssp HHHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCBS-SCCHHHHHHTEEEE-SSCTTSHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHhHHHHhHHHHHhCCCHHHHHHhhCCCC-CCChhhhhhccEec-CCCCCcchhhhHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999999999999999999986 49999999999997 799999999999999999999999999999
Q ss_pred ecCcCCCCCCCcccCCC-----ceeEeecCCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHcCCCccCC
Q 002025 905 VTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 978 (978)
Q Consensus 905 vTGssRlP~~Gf~~L~p-----~f~I~~~~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI~~~~GF~LS 978 (978)
||||+|+|++||+.|+| +|+|++.+. ++++||+||||||+|+||+|+|+|+||+||++||++++||||.
T Consensus 307 vTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~-----~~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GF~l~ 380 (380)
T 1zvd_A 307 VTGSSRVPLQGFKALQGAAGPRLFTIHQIDA-----CTNNLPKAHTCFNRIDIPPYESYEKLYEKLLTAIEETCGFAVE 380 (380)
T ss_dssp HHSCSSBCTTCGGGCEETTEECCEEEEECCC-----CTTSCCEEEGGGTEEEECCCSSHHHHHHHHHHHHCC-------
T ss_pred HhCCCCCCCcchhhccccCCCCceEEEecCC-----CCCCCCEEecCcCEEECCCCCCHHHHHHHHHHHHHhCCCcCcC
Confidence 99999999999999974 799996543 3579999999999999999999999999999999999999984
No 3
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A
Probab=100.00 E-value=1.8e-89 Score=781.36 Aligned_cols=375 Identities=33% Similarity=0.590 Sum_probs=342.9
Q ss_pred hhhhhcCCcccchhhHHHHHHHHHHHHHHhcCCCCCcceeeEEEeCCchHHHHHHHHhcCC-ccccCccEEEEEEeccCc
Q 002025 577 NEILKQAPFLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMS-EEDLRGAIRVTFVNELGV 655 (978)
Q Consensus 577 ~~il~~~Pfl~pf~~Rv~if~~~l~~~r~~~~~~~~~~r~~i~VrR~~ileDa~~~L~~~~-~~~lk~~L~V~F~~E~G~ 655 (978)
..++...||.+||+.|+.+|++.+.+. .....+.+++|||++|++||++++...+ ++.+|++++|+|+|
T Consensus 10 ~~~~~~~p~~~~f~~k~~~f~~~l~~~------~~~~~~~~l~V~R~~i~eds~~~l~~~~~~~~lk~~l~V~F~g---- 79 (392)
T 2oni_A 10 GRENLYFQGSREFKQKYDYFRKKLKKP------ADIPNRFEMKLHRNNIFEESYRRIMSVKRPDVLKARLWIEFES---- 79 (392)
T ss_dssp ----CCSTTHHHHHHHHHHHHHHCCCC------SSSCSEEEEEECGGGHHHHHHHHHHHCSCGGGGGSEEEEEEC-----
T ss_pred hhcccCCCccccHHHHHHHHHHHHhcc------cCCCCCEEEEEcCCchHHHHHHHHHccCcHHhhCccEEEEECC----
Confidence 345678999999999999999876431 1234567999999999999999999875 45689999999998
Q ss_pred ccccccCCCchHHHHHHHHHHhhcccCCCceecC--CCceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcH
Q 002025 656 EEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS--DHLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFAT 733 (978)
Q Consensus 656 ~E~GiD~GGv~REFf~~l~~e~fdp~~gLF~~t~--~~~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~ 733 (978)
|+|+|+|||+||||+++++++|+|++|||..++ +..++|||.+...+++++++|+|+|+++|+|||+|+++|++|++
T Consensus 80 -E~G~D~GG~~rEff~ll~~el~~p~~gLF~~~~~~~~~~~~np~s~~~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~ 158 (392)
T 2oni_A 80 -EKGLDYGGVAREWFFLLSKEMFNPYYGLFEYSATDNYTLQINPNSGLCNEDHLSYFTFIGRVAGLAVFHGKLLDGFFIR 158 (392)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHHTCGGGSSEEESSTTCCCEEECTTHHHHCTTHHHHHHHHHHHHHHHHHHTCCCSSCBCH
T ss_pred -CccccCCccHHHHHHHHHHHHcCcccCCceecCCCCceeccCCccccccHHHHHHHHhcchhhhhhhcCCcccCccchH
Confidence 789999999999999999999999999999764 34678999875456789999999999999999999999999999
Q ss_pred HHHHhhhccCCCCCCCCCCCHHHHHHHHHHhhccCccccceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHH
Q 002025 734 FFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLV 813 (978)
Q Consensus 734 ~f~k~Llg~~~tl~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~ 813 (978)
+|||+|+|.+++++||+++||++|++|.+|+++ |+++++|+|+++.+.+|...++||+|||++|+||++||.+||+++
T Consensus 159 ~f~K~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~--d~~~l~L~F~v~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~ 236 (392)
T 2oni_A 159 PFYKMMLGKQITLNDMESVDSEYYNSLKWILEN--DPTELDLMFCIDEENFGQTYQVDLKPNGSEIMVTNENKREYIDLV 236 (392)
T ss_dssp HHHHHHTTCCCCTHHHHTTCHHHHHHHHHHHHS--CCGGGCCBSEEEEEETTEEEEEESSTTGGGCBCCTTTHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHhCHHHHHHHHHHhcC--ChhHceeeEEEeeecCCceeEEecCCCCccCccchhhHHHHHHHH
Confidence 999999999999999999999999999999864 678899999999999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHhhcccccchhHHhhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcC
Q 002025 814 SNHRLNFQIRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSF 893 (978)
Q Consensus 814 ~~~~l~~~i~~q~~aF~~Gf~~Vip~~~L~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~f 893 (978)
++|++++++++|++||++||++|||.+++++|+|+||+.+|||.++ ||+++|++||.|.|||+++|++|+|||+|+++|
T Consensus 237 ~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~F~~~ELe~licG~~~-id~~dl~~~t~y~~gy~~~~~~i~~FW~vv~~~ 315 (392)
T 2oni_A 237 IQWRFVNRVQKQMNAFLEGFTELLPIDLIKIFDENELELLMCGLGD-VDVNDWRQHSIYKNGYCPNHPVIQWFWKAVLLM 315 (392)
T ss_dssp HHHHHTTTSHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCC-CCHHHHHHTCEEETTCCTTCHHHHHHHHHHHHS
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccHHhhhcCCHHHHHHhhcCCCC-CCHHHHhcceEECCCCCCCCchheeHHHHHHhC
Confidence 9999999999999999999999999999999999999999999864 999999999999999999999999999999999
Q ss_pred CHHHHhhcceeecCcCCCCCCCcccCC-----CceeEeecCCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHH
Q 002025 894 SLENQKKFLKFVTGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYA 968 (978)
Q Consensus 894 s~eer~kfL~FvTGssRlP~~Gf~~L~-----p~f~I~~~~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~A 968 (978)
|+|||++||+|||||+|+|++||+.|. ++|+|++.+. +++||+||||||+|+||+|+|+|+||+||++|
T Consensus 316 s~eer~~fL~FvTGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~------~~~LP~a~TCfn~L~LP~Yss~e~L~~kL~~A 389 (392)
T 2oni_A 316 DAEKRIRLLQFVTGTSRVPMNGFAELYGSNGPQLFTIEQWGS------PEKLPRAHTCFNRLDLPPYETFEDLREKLLMA 389 (392)
T ss_dssp CHHHHHHHHHHHHSCSCCCTTCGGGCEETTEECCCEEEECSC------TTSCCEEEGGGTEEEECCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCCcchhhhcccCCCCceEEEeCCC------CCcCcEEEcccCEeECCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999995 3699998653 36999999999999999999999999999999
Q ss_pred HHc
Q 002025 969 INA 971 (978)
Q Consensus 969 I~~ 971 (978)
|++
T Consensus 390 I~n 392 (392)
T 2oni_A 390 VEN 392 (392)
T ss_dssp HC-
T ss_pred HhC
Confidence 985
No 4
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A
Probab=100.00 E-value=3.9e-88 Score=767.06 Aligned_cols=365 Identities=33% Similarity=0.588 Sum_probs=338.9
Q ss_pred chhhHHHHHHHHHHHHHHhcCCCCCcceeeEEEeCCchHHHHHHHHhcCCccccCccEEEEEEeccCcccccccCCCchH
Q 002025 588 PFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFK 667 (978)
Q Consensus 588 pf~~Rv~if~~~l~~~r~~~~~~~~~~r~~i~VrR~~ileDa~~~L~~~~~~~lk~~L~V~F~~E~G~~E~GiD~GGv~R 667 (978)
+|+.|+.+|+.++.... ...+.+++|||++|++||++++...++.++|++++|+|+| |+|+|+|||+|
T Consensus 3 ~f~~k~~~f~~~~~~~~-------~~~~~~l~V~R~~i~~ds~~~l~~~~~~~l~~~l~V~F~g-----E~G~D~GG~~r 70 (374)
T 1nd7_A 3 GFRWKLAHFRYLCQSNA-------LPSHVKINVSRQTLFEDSFQQIMALKPYDLRRRLYVIFRG-----EEGLDYGGLAR 70 (374)
T ss_dssp THHHHHHHHHHHHHHTC-------CSSEEEEEECTTTHHHHHHHHHHTSCGGGGGSEEEEEETT-----TCCCCCTHHHH
T ss_pred ChHHHHHHHHHHHhhcC-------CCCCeEEEECCCCHHHHHHHHHHhcCHHhccceEEEEECC-----CCCcCCCccHH
Confidence 68999999998765421 2356699999999999999999999888999999999998 78999999999
Q ss_pred HHHHHHHHHhhcccCCCceecCC--CceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCC
Q 002025 668 DFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNY 745 (978)
Q Consensus 668 EFf~~l~~e~fdp~~gLF~~t~~--~~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~f~k~Llg~~~t 745 (978)
|||+++++++|+|++|||..+++ ..++|||.+. ..++++++|+|+|+++|+|||+|+++|++||++|||+|+|.+++
T Consensus 71 Eff~ll~~el~~p~~~lF~~~~~~~~~~~~~p~s~-~~~~~l~~f~flG~lig~al~~~~~ld~~f~~~f~k~llg~~~~ 149 (374)
T 1nd7_A 71 EWFFLLSHEVLNPMYCLFEYAGKNNYCLQINPAST-INPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLT 149 (374)
T ss_dssp HHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHcCCccccccccCCCCceeccCCccc-CCHHHHHHHHHHHHHHHHHHhcCCeeCCcCCHHHHHHHhCCCCC
Confidence 99999999999999999997643 3578999875 56789999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhccCccccceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHHHHHHhhhHHHH
Q 002025 746 LNDLPSLDPELYRHLIFLKHYEADISELELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQ 825 (978)
Q Consensus 746 l~DL~~lDp~l~~sL~~Lk~~~~dvedL~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~~~~l~~~i~~q 825 (978)
++||+++||++|++|.+|++++.+..+++++|+++.+.+|...++||+|||++|+||++||.+||+++++|+++++++.|
T Consensus 150 l~Dl~~~Dp~l~~sL~~l~~~~~~~~~l~l~F~~~~~~~G~~~~veL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q 229 (374)
T 1nd7_A 150 IKDLESIDTEFYNSLIWIRDNNIEECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEWRFSRGVQEQ 229 (374)
T ss_dssp HHHHHTTCHHHHHHHHHHHSSCSCSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHhhHHHHHhhhhhccCChhhhhcceeEEEeeccCCceeeEecCCCCcCceeccccHHHHHHHHHHHHHhccHHHH
Confidence 99999999999999999998654333589999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccccchhHHhhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcCCHHHHhhcceee
Q 002025 826 SSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFV 905 (978)
Q Consensus 826 ~~aF~~Gf~~Vip~~~L~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~fs~eer~kfL~Fv 905 (978)
++||++||++|||.+++++|+|+||+.+|||.++ ||+++|++||.|.| |+++|++|+|||+|+++||+|||++||+||
T Consensus 230 ~~af~~Gf~~vip~~~L~~F~~~ELe~li~G~~~-id~~dl~~~t~y~g-y~~~~~~i~~FW~vv~~~~~eer~~fL~Fv 307 (374)
T 1nd7_A 230 TKAFLDGFNEVVPLQWLQYFDEKELEVMLCGMQE-VDLADWQRNTVYRH-YTRNSKQIIWFWQFVKETDNEVRMRLLQFV 307 (374)
T ss_dssp HHHHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCC-CCHHHHHHTEEEES-CCTTSHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHhhhhhCCHHHHhcCCHHHHHHHhcCCCC-CCHHHHhhheEEcC-CCCCCcceeeHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999865 99999999999985 999999999999999999999999999999
Q ss_pred cCcCCCCCCCcccCC-----CceeEeecCCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHcCC
Q 002025 906 TGCSRGPLLGFKYLE-----PLFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEA 973 (978)
Q Consensus 906 TGssRlP~~Gf~~L~-----p~f~I~~~~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI~~~~ 973 (978)
|||+|+|++||+.|. ++|+|++.+. +++||+||||||+|+||+|+|+|+||+||++||++++
T Consensus 308 TGs~rlP~~Gf~~L~~~~gp~~f~I~~~~~------~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~e 374 (374)
T 1nd7_A 308 TGTCRLPLGGFAELMGSNGPQKFCIEKVGK------DTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEETE 374 (374)
T ss_dssp HSCSCCCTTCGGGCEETTEECCEEEECCSC------TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSCC
T ss_pred hCCCCCCCcchhhccccCCCCceEEEeCCC------CCcCCEEEcccCEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999996 3799998653 3699999999999999999999999999999999974
No 5
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-88 Score=779.49 Aligned_cols=370 Identities=32% Similarity=0.594 Sum_probs=331.8
Q ss_pred cccchhhHHHHHHHHHHHHHHhcCCCCCcceeeEEEeCCchHHHHHHHHhcCCccccCccEEEEEEeccCcccccccCCC
Q 002025 585 FLVPFTSRAKIFQSQLASVRQRHGSHGVFTRSRFRIRRDHILEDAYSQMSTMSEEDLRGAIRVTFVNELGVEEAGIDGGG 664 (978)
Q Consensus 585 fl~pf~~Rv~if~~~l~~~r~~~~~~~~~~r~~i~VrR~~ileDa~~~L~~~~~~~lk~~L~V~F~~E~G~~E~GiD~GG 664 (978)
+--+|+.|..+|+++.+. ....++.+++|||++|+|||++++...++.++|++|+|+|+| |+|+|+||
T Consensus 51 y~~~~~~k~~~f~~~~~~-------~~~~~~~~l~VrR~~i~eds~~~l~~~~~~~lk~~l~V~F~g-----E~G~D~GG 118 (429)
T 3olm_A 51 YKRDFRRKVIYFRSQPAL-------RILPGQCHIKVRRKNIFEDAYQEIMRQTPEDLKKRLMIKFDG-----EEGLDYGG 118 (429)
T ss_dssp HHHHHHHHHHHHHSSGGG-------SCCSSCEEEEEETTSHHHHHHHHHHHSCHHHHTSCEEEEEET-----TC------
T ss_pred ccccchHHHHHHHHHHhh-------cCCCCceEEEEecchhHHHHHHHHHhcChHhcCcceEEEECC-----CCccCCCh
Confidence 666788999999865421 123356689999999999999999988889999999999998 78999999
Q ss_pred chHHHHHHHHHHhhcccCCCceecCC--CceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhcc
Q 002025 665 IFKDFMENITRAAFDVQYGLFKETSD--HLLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQK 742 (978)
Q Consensus 665 v~REFf~~l~~e~fdp~~gLF~~t~~--~~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~f~k~Llg~ 742 (978)
|+||||+++++++|||++|||..+++ ..++|||.+. ..++++++|+|+|+++|+|||+|+++|++||++|||+|+|.
T Consensus 119 ~~rEff~ll~~elf~p~~gLF~~~~~~~~~~~~np~s~-~~~~~l~~f~flG~lig~Al~~~~~ld~~f~~~f~k~Llg~ 197 (429)
T 3olm_A 119 VSREFFFLLSHEMFNPFYCLFEYSAYDNYTIQINPNSG-INPEHLNYFKFIGRVVGLGVFHRRFLDAFFVGALYKMMLRK 197 (429)
T ss_dssp --CHHHHHHHHHHTCGGGSSEEESSSSSCCEEECGGGG-GSTTHHHHHHHHHHHHHHHHHTTCCCCCCBCHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHcCccCCCceeeCCCCeeEeeCCccc-CCHHHHHHHHHHHHHHHHHHhcCCccCCCcCHHHHHhhcCC
Confidence 99999999999999999999997653 4578999875 46789999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhhccCcccc-ceeeEEEEeccCCcceeeeccCCCcccccChhhHHHHHHHHHHHHHhhh
Q 002025 743 YNYLNDLPSLDPELYRHLIFLKHYEADISE-LELYFVILNNEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQ 821 (978)
Q Consensus 743 ~~tl~DL~~lDp~l~~sL~~Lk~~~~dved-L~L~Ftv~~~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~~~~l~~~ 821 (978)
+++++||+++||++|++|.+|++ +|+++ ++++|+++.+.+|...++||+|||++|+||++||.+||+++++|+++++
T Consensus 198 ~~~l~Dl~~~Dp~l~~sL~~ll~--~d~~~~l~l~F~~~~~~~g~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~~~l~~~ 275 (429)
T 3olm_A 198 KVVLQDMEGVDAEVYNSLNWMLE--NSIDGVLDLTFSADDERFGEVVTVDLKPDGRNIEVTDGNKKEYVELYTQWRIVDR 275 (429)
T ss_dssp CCCHHHHHHHCHHHHHHHHHHTT--SCCTTTCCCBSEEEEEETTEEEEEESSTTGGGSBCCTTTHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHhHHHHHHHHHHHh--CCHHHhhcCceEEEeccCCceeeEeccCCCcccccCchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999986 45654 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccchhHHhhcCHHHHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcCCHHHHhhc
Q 002025 822 IRQQSSHFLRGFQQLIQKDWIDMFNEHELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKF 901 (978)
Q Consensus 822 i~~q~~aF~~Gf~~Vip~~~L~~F~p~EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~fs~eer~kf 901 (978)
|+.|++||++||++|||.+++++|+|+||+.+|||.++ ||++||++||.|. ||+++|++|+|||+|+++||+|||++|
T Consensus 276 v~~q~~aF~~Gf~~vip~~~L~~F~~~ELe~Li~G~~~-id~~dl~~~t~y~-Gy~~~~~~I~~FW~vv~~~s~eer~~f 353 (429)
T 3olm_A 276 VQEQFKAFMDGFNELIPEDLVTVFDERELELLIGGIAE-IDIEDWKKHTDYR-GYQESDEVIQWFWKCVSEWDNEQRARL 353 (429)
T ss_dssp THHHHHHHHHHHHTTSCHHHHTTSCHHHHHHHHTCBCC-CCHHHHHHTEEEE-SCCTTSHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCHHHHhcCCHHHHHHHhcCCCC-CCHHHHHHhcccc-CCCCCchHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999999999999999999999999999864 9999999999997 799999999999999999999999999
Q ss_pred ceeecCcCCCCCCCcccCCC-----ceeEeecCCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHcCCCcc
Q 002025 902 LKFVTGCSRGPLLGFKYLEP-----LFCIQRAAGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFD 976 (978)
Q Consensus 902 L~FvTGssRlP~~Gf~~L~p-----~f~I~~~~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI~~~~GF~ 976 (978)
|+|||||+|+|++||+.|+| +|+|++.+. +++||+||||||+|+||+|+|+|+||+||++||++++|||
T Consensus 354 L~FvTGs~rlP~~Gf~~L~~~~g~~~f~I~~~~~------~~~LP~A~TCfN~L~LP~Yss~e~L~ekL~~AI~~~~GFg 427 (429)
T 3olm_A 354 LQFTTGTSRIPVNGFKDLQGSDGPRRFTIEKAGE------VQQLPKSHTCFNRVDLPQYVDYDSMKQKLTLAVEETIGFG 427 (429)
T ss_dssp HHHHHSCSCBCTTCGGGCEETTEECCEEEECCSC------TTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHHTC---
T ss_pred HhHhcCCCCCCCcccccccCcCCCceEEEeeCCC------CCCCCccccccCEeECCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999985 799997652 4699999999999999999999999999999999999998
Q ss_pred C
Q 002025 977 L 977 (978)
Q Consensus 977 L 977 (978)
+
T Consensus 428 ~ 428 (429)
T 3olm_A 428 Q 428 (429)
T ss_dssp -
T ss_pred C
Confidence 6
No 6
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Probab=100.00 E-value=4.1e-88 Score=762.39 Aligned_cols=346 Identities=34% Similarity=0.614 Sum_probs=318.7
Q ss_pred eeEEEeCCchHHHHHHHHh---cCCccccCccEEEEEEeccCcccccccCCCchHHHHHHHHHHhhcccCCCceecC-CC
Q 002025 616 SRFRIRRDHILEDAYSQMS---TMSEEDLRGAIRVTFVNELGVEEAGIDGGGIFKDFMENITRAAFDVQYGLFKETS-DH 691 (978)
Q Consensus 616 ~~i~VrR~~ileDa~~~L~---~~~~~~lk~~L~V~F~~E~G~~E~GiD~GGv~REFf~~l~~e~fdp~~gLF~~t~-~~ 691 (978)
.+++|||++|++||++++. ..++.++|++++|+|+| |+|+|+|||+||||+++++++|+|++|||..++ ++
T Consensus 6 ~~l~V~R~~i~eds~~~l~~~~~~~~~~lk~~l~V~F~g-----E~G~D~GG~~rEff~ll~~el~~p~~glF~~~~~~~ 80 (358)
T 1c4z_A 6 LRLKVRRDHIIDDALVRLEMIAMENPADLKKQLYVEFEG-----EQGVDEGGVSKEFFQLVVEEIFNPDIGMFTYDESTK 80 (358)
T ss_dssp CCEEECSSSHHHHHHHHHHHHHHSCGGGGGSCCCEEETT-----CCCCCSSHHHHHHHHHHHHHHTSGGGCSEEEETTTT
T ss_pred EEEEEcCCcHHHHHHHHHHHHhccCHHHhcCceEEEECC-----CcCcCCCccHHHHHHHHHHHHcCCcCCceeecCCCC
Confidence 4899999999999999985 34678999999999998 789999999999999999999999999999876 45
Q ss_pred ceecCCCCCCchhhHHHHHHHHHHHHHHHHHcCCcccccCcHHHHHhhhccCCCCCCCCCCCHHHHHHHHHHhhccCccc
Q 002025 692 LLYPNPGSGMIHEQHLQFFHFLGILLAKAMFEGILVDIPFATFFLSKLKQKYNYLNDLPSLDPELYRHLIFLKHYEADIS 771 (978)
Q Consensus 692 ~lypnp~s~~~~~~~l~~f~flG~llGkAL~~g~~ldl~fa~~f~k~Llg~~~tl~DL~~lDp~l~~sL~~Lk~~~~dve 771 (978)
.+||||.+.. +.++|+|+|+++|+|||+|+++|++||++|||+|+|.+++++||+++||++|++|++|+++++|++
T Consensus 81 ~~~~np~s~~----~~~~f~flG~lig~Al~~~~~ld~~f~~~f~k~llg~~~~l~Dl~~~Dp~l~~sL~~l~~~~~d~~ 156 (358)
T 1c4z_A 81 LFWFNPSSFE----TEGQFTLIGIVLGLAIYNNCILDVHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVE 156 (358)
T ss_dssp EEEECTTCCS----CHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHHHSHHHHHHHHHHHHCCSCHH
T ss_pred eEeeCCcccc----chHHHHhHHHHHHHHHHCCCCcCCcCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHhcCCchh
Confidence 7899998742 246899999999999999999999999999999999999999999999999999999999988885
Q ss_pred -cceeeEEEEe-ccCCcceeeeccCCCcccccChhhHHHHHHHHHHHHHhhhHHHHHHHHHhhcccccchhHHh-hcCHH
Q 002025 772 -ELELYFVILN-NEYGEQTEEELLPGGKNIRVTNENVITFIHLVSNHRLNFQIRQQSSHFLRGFQQLIQKDWID-MFNEH 848 (978)
Q Consensus 772 -dL~L~Ftv~~-~~~g~~~~veLip~G~~i~VT~eNk~eYI~l~~~~~l~~~i~~q~~aF~~Gf~~Vip~~~L~-~F~p~ 848 (978)
+++++|+++. +.+|...++||+|||++|+||++||.+||+++++|++++++++|++||++||++|+|.+++. +|+|+
T Consensus 157 ~~l~ltF~~~~~~~~G~~~~~eL~p~G~~i~VT~~N~~eYv~l~~~~~l~~~i~~q~~af~~Gf~~vip~~~L~~lF~~~ 236 (358)
T 1c4z_A 157 DDMMITFQISQTDLFGNPMMYDLKENGDKIPITNENRKEFVNLYSDYILNKSVEKQFKAFRRGFHMVTNESPLKYLFRPE 236 (358)
T ss_dssp HHTCCBSEEEECCTTTCCEEEESSTTTTTSBCCTTTHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHSSSCSCSCSSTH
T ss_pred hhccceEEEeccccCCCeeeeecCCCCcccccccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcchhhcCCCHH
Confidence 4899999974 67899999999999999999999999999999999999999999999999999999999886 89999
Q ss_pred HHHHhHcCCCCCCCHHHHhhcccccCCcCCCcHHHHHHHHHHhcCCHHHHhhcceeecCcCCCCCCCcccCCCceeEeec
Q 002025 849 ELQLLISGSLDSLDFDDLRQNTNYVGGYHSEHYVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPLLGFKYLEPLFCIQRA 928 (978)
Q Consensus 849 EL~~Li~G~~~~iD~~dL~~~t~y~ggy~~~~~~I~~FWevl~~fs~eer~kfL~FvTGssRlP~~Gf~~L~p~f~I~~~ 928 (978)
||+.++||.++ ||+++|++||+|+|||+++|++|+|||+++++||+|||++||+|||||+|+|++||+.| +|+|++.
T Consensus 237 ELe~li~G~~~-id~~~l~~~t~y~~gy~~~~~~i~~FW~vv~~~~~eer~~fL~FvTGs~rlP~~Gf~~l--~~~I~~~ 313 (358)
T 1c4z_A 237 EIELLICGSRN-LDFQALEETTEYDGGYTRDSVLIREFWEIVHSFTDEQKRLFLQFTTGTDRAPVGGLGKL--KMIIAKN 313 (358)
T ss_dssp HHHHHHHCBCC-CCCTTTSTTCEEESSCCSSCHHHHHHHHHHHTSCHHHHHHHHHHHSSSSSBCTTCGGGG--CCEEEEE
T ss_pred HHHHHhhcccC-CCHHHHHHHceeCCCCCCCcchhhhHHHHHHhCCHHHHHHHHHHHcCCCCCCCCCcccc--eeeeecC
Confidence 99999999875 99999999999999999999999999999999999999999999999999999999998 5888876
Q ss_pred CCCCCCcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHcCCCccCC
Q 002025 929 AGSASEEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDLS 978 (978)
Q Consensus 929 ~~~~~~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI~~~~GF~LS 978 (978)
+.+ .++||+||||||+|+||+|+|+|+||+||++||++++||||+
T Consensus 314 ~~~-----~~~LP~a~TCfn~L~LP~Y~s~e~l~~kL~~AI~~~~GFgl~ 358 (358)
T 1c4z_A 314 GPD-----TERLPTSHTCFNVLLLPEYSSKEKLKERLLKAITYAKGFGML 358 (358)
T ss_dssp EES-----CSCCCEEEGGGTEEEEEECSCHHHHHHHHHHHHHHC------
T ss_pred CCC-----CCCCeEEEccCCEeECCCCCCHHHHHHHHHHHHHhCCCCCcC
Confidence 532 469999999999999999999999999999999999999984
No 7
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens}
Probab=100.00 E-value=7.1e-36 Score=284.24 Aligned_cols=109 Identities=26% Similarity=0.435 Sum_probs=79.2
Q ss_pred CCCHHHHhhcccccCCcCCCc----HHHHHHHHHHhcCCHHHHhhcceeecCcCCCCC--CCcccCCCceeEeecCCCCC
Q 002025 860 SLDFDDLRQNTNYVGGYHSEH----YVIEMFWEVLKSFSLENQKKFLKFVTGCSRGPL--LGFKYLEPLFCIQRAAGSAS 933 (978)
Q Consensus 860 ~iD~~dL~~~t~y~ggy~~~~----~~I~~FWevl~~fs~eer~kfL~FvTGssRlP~--~Gf~~L~p~f~I~~~~~~~~ 933 (978)
-||++|||+||+|.|+|+++| ++|+|||+++++|++|||++||+|||||+|+|+ +||+.| |+|+|+..
T Consensus 3 ~~Dv~dLr~~T~Y~~~~~~~~~~~~~~i~wFW~vv~~~~~eer~~fL~FvTGs~rlP~~~~Gf~~l-~~~~i~~~----- 76 (118)
T 3pt3_A 3 LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPM-PSITIRPP----- 76 (118)
T ss_dssp ---------CCEEEECSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHSCC-------------CEEEEESC-----
T ss_pred ccCHHHHHhhcEEcCCcCCCccccchHHHHHHHHHHHCCHHHHHHHHhHhcCCCCCCCcccCcccC-CcEEEECC-----
Confidence 489999999999999999887 999999999999999999999999999999999 899998 78998731
Q ss_pred CcCCCCCceeccccCeeecCCCCCHHHHHHHHHHHHHcCCCccC
Q 002025 934 EEALDRLPTSATCMNLLKLPPYRSKEQMSTKLLYAINAEAGFDL 977 (978)
Q Consensus 934 ~~~~~rLPtA~TCfN~L~LP~Yss~e~LreKL~~AI~~~~GF~L 977 (978)
++++||+||||||+|+||+|+|+|+||+||++||++ +|||+
T Consensus 77 --~~~~LP~A~TCfn~L~LP~Y~s~e~L~~kL~~AI~~-~gfGf 117 (118)
T 3pt3_A 77 --DDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKT-KNFGF 117 (118)
T ss_dssp --CTTSCCEEETTTTEEEEECCSSHHHHHHHHHHHHC-------
T ss_pred --CCCCCccceehhceeECCCCCCHHHHHHHHHHHHHh-CCcCC
Confidence 247999999999999999999999999999999998 89986
No 8
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=11.96 E-value=1.8e+02 Score=27.65 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=28.5
Q ss_pred HHHHHHHHHH-------------------HHHHHHhhchhhhhhccCCCCCCCCChhHHHHHHhhh
Q 002025 98 DFRVKKFAFA-------------------CIQAVHQNRKELKDQLFVTPEESNTPPTLLLEAVVFL 144 (978)
Q Consensus 98 ~~~iK~l~~~-------------------C~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 144 (978)
-|++|+|.|. |-|.+.|+.|-++. . |.-+-.+.-|+.+|
T Consensus 29 kY~lKHlVWAsrELeRFalnpgLLET~eGC~qIl~qLqPal~T------G--SEeLkSL~NtvatL 86 (133)
T 2gol_A 29 QYKLKHIVWASRELERFAVNPGLLETSEGCRQILGQLQPSLQT------G--SEELRSLYNTIAVL 86 (133)
T ss_dssp BCCHHHHHHHHHHHHHTTBCGGGGGSHHHHHHHHHHHHHHHTT------T--CCTTHHHHHHHHHH
T ss_pred ccccccchhhhhHHHHhccCcchhhhHHHHHHHHHHhcccccc------c--cHHHHHHHhhhhhe
Confidence 3788888886 88899999999998 5 44444455555554
No 9
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=10.97 E-value=1.7e+02 Score=25.83 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=1.5
Q ss_pred eccCCCcccccCh
Q 002025 791 ELLPGGKNIRVTN 803 (978)
Q Consensus 791 eLip~G~~i~VT~ 803 (978)
-|+|.|+...++.
T Consensus 13 ~~~~~~~~~~~~l 25 (88)
T 3b09_A 13 GLVPRGSHMSDLF 25 (88)
T ss_dssp ----------CCS
T ss_pred CCCcCCccccccc
Confidence 5788888776643
No 10
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=9.05 E-value=1.6e+02 Score=21.53 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=17.8
Q ss_pred HHHHHHHHHh--cCCHHHHhhcce
Q 002025 882 VIEMFWEVLK--SFSLENQKKFLK 903 (978)
Q Consensus 882 ~I~~FWevl~--~fs~eer~kfL~ 903 (978)
.-+.|.+|++ .+|+|+|-.+++
T Consensus 5 qQnaFYevLh~~nLtEeQrn~yI~ 28 (34)
T 1l6x_B 5 CQRRFYEALHDPNLNEEQRNAKIK 28 (34)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHhHHH
Confidence 3467999996 899999988764
Done!