BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002026
(978 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HFH|A Chain A, Crystal Structure Of Tandem Ff Domains
pdb|3HFH|B Chain B, Crystal Structure Of Tandem Ff Domains
Length = 190
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 86/184 (46%), Gaps = 6/184 (3%)
Query: 581 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTXXXXXXXXXXX 640
+F + L ERGV+ FS WE EL IVFDPR+ + R +F++YV T
Sbjct: 10 QFXDXLLERGVSAFSTWEXELHXIVFDPRYLLLNPXE-RXQVFDQYVXTRAEEERREXXN 68
Query: 641 XXXXXXXGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNERVLPLX 699
F EE + + F D RF A++ DRE L NE V
Sbjct: 69 XIXQAXEDFXXXXEEAX--FNPRATFSEFAAXHAXDSRFXAIEXXXDREALFNEFVAAAR 126
Query: 700 XXXXXXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSV-RHEDREVIF 758
S F +L + SRWS V D + DPRY +V RE +F
Sbjct: 127 XXEXEDSXTRGEXIXSDFFELLSNHH-LDSQSRWSXVXDXVESDPRYXAVDSSSXREDLF 185
Query: 759 NEYV 762
+Y+
Sbjct: 186 XQYI 189
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 582 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 628
F E+L + S+W + DPR+ A+ S S R LF +Y++
Sbjct: 144 FFELLSNHHLDSQSRWSXVXDXVESDPRYXAVDSSSXREDLFXQYIE 190
>pdb|4FQG|A Chain A, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
pdb|4FQG|B Chain B, Crystal Structure Of The Tcerg1 Ff4-6 Tandem Repeat Domain
Length = 190
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 70/130 (53%), Gaps = 14/130 (10%)
Query: 811 VRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKT 870
++R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+
Sbjct: 3 MKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEA 61
Query: 871 LYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREAL 930
L ++ FR LL E T+ ++W K+++K +PR K +R+
Sbjct: 62 LTKKKREHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFSSSDRKK- 109
Query: 931 WRRHAEEIQR 940
+R EE R
Sbjct: 110 -QREFEEYIR 118
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 26/123 (21%)
Query: 649 FKQLLEEV--SEDIDHSTDYQTFKKKWGSDPRFEA---LDRKDRELLLNERVLPLXXXXX 703
FK LL ++ S D+ S +T +K D R+E+ L+R+++E L NE + L
Sbjct: 12 FKALLSDMVRSSDVSWSDTRRTLRK----DHRWESGSLLEREEKEKLFNEHIEALTKKKR 67
Query: 704 XXXXXXXXXXXSSFKSMLREKGDITLSSRWSKVKDILRDDPR----YKSVRHEDREVIFN 759
F+ +L E ITL+S W +VK I+++DPR S R + RE F
Sbjct: 68 -----------EHFRQLLDETSAITLTSTWKEVKKIIKEDPRCIKFSSSDRKKQRE--FE 114
Query: 760 EYV 762
EY+
Sbjct: 115 EYI 117
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 15/79 (18%)
Query: 873 ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SKMPRKEREA 929
E +F+ LL++++ + SWS +R L+ + R+ S + R+E+E
Sbjct: 6 EEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSLLEREEKEK 53
Query: 930 LWRRHAEEIQRKHKSSLDQ 948
L+ H E + +K + Q
Sbjct: 54 LFNEHIEALTKKKREHFRQ 72
Score = 31.6 bits (70), Expect = 2.3, Method: Composition-based stats.
Identities = 44/178 (24%), Positives = 71/178 (39%), Gaps = 62/178 (34%)
Query: 716 SFKSMLREKGDITLSS--RWSKVKDILRDDPRYKS---VRHEDREVIFNEYVXXXXXXXX 770
+FK++L D+ SS WS + LR D R++S + E++E +FNE++
Sbjct: 11 NFKALL---SDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKEKLFNEHIEA------ 61
Query: 771 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRLKVRRKEAVTSFQALLVETIK- 829
L +++E F+ LL ET
Sbjct: 62 --------------------------------------LTKKKRE---HFRQLLDETSAI 80
Query: 830 DPQASWTESRPKLEKDPQGRATNADLDSSDREKL--FREHIKTLYERCAHDFRGLLAE 885
++W E + +++DP+ SSDR+K F E+I+ Y DFR LL E
Sbjct: 81 TLTSTWKEVKKIIKEDPRC----IKFSSSDRKKQREFEEYIRDKYITAKADFRTLLKE 134
>pdb|2DOD|A Chain A, Solution Structure Of The First Ff Domain Of Human
Transcription Factor Ca150
Length = 82
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 581 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKT 629
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 22 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKT 69
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 717 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYV 762
FK ML E+G ++ S W K + DPRY + ++R+ +F++YV
Sbjct: 23 FKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYV 67
>pdb|2KIS|A Chain A, Solution Structure Of Ca150 Ff1 Domain And Ff1-Ff2
Interdomain Linker
Length = 71
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 581 KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKT 629
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKT
Sbjct: 12 QFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKT 59
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 717 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYV 762
FK ML E+G ++ S W K + DPRY + ++R+ +F++YV
Sbjct: 13 FKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFDQYV 57
>pdb|2L5F|A Chain A, Solution Structure Of The Tandem Ww Domains From HypaFBP11
Length = 92
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
WT HK+ G YYYN T +ST+EKP K TP + L+ W ++
Sbjct: 16 WTEHKSPDGRTYYYNTETKQSTWEKPDDLK----------TPAE-QLLSKCPWKEYKSDS 64
Query: 419 GKKYYYNSKMKVSSWQIPSEV 439
GK YYYNS+ K S W P E+
Sbjct: 65 GKTYYYNSQTKESRWAKPKEL 85
>pdb|2JXW|A Chain A, Solution Structure Of The Tandem Ww Domains Of Fbp21
Length = 75
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W T G YYY+ ++G S +EKP GF+G+ K V+ T W + D
Sbjct: 7 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVK-----------TVWVEGLSED 55
Query: 419 GKKYYYNSKMKVSSWQIPSE 438
G YYYN++ S W+ P +
Sbjct: 56 GFTYYYNTETGESRWEKPDD 75
>pdb|1O6W|A Chain A, Solution Structure Of The Prp40 Ww Domain Pair Of The
Yeast Splicing Factor Prp40
Length = 75
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 15/81 (18%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTD--WALVTT 416
W K +G +YYYN +T +ST+EKP IS E L + W T
Sbjct: 4 WKEAKDASGRIYYYNTLTKKSTWEKPKEL-------------ISQEELLLRENGWKAAKT 50
Query: 417 NDGKKYYYNSKMKVSSWQIPS 437
DGK YYYN + +SW IP+
Sbjct: 51 ADGKVYYYNPTTRETSWTIPA 71
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 357 DAWTAHKTDTGIVYYYNAVTGESTYEKPA 385
+ W A KT G VYYYN T E+++ PA
Sbjct: 43 NGWKAAKTADGKVYYYNPTTRETSWTIPA 71
>pdb|2DOF|A Chain A, Solution Structure Of The Fourth Ff Domain Of Human
Transcription Factor Ca150
Length = 85
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 42/64 (65%), Gaps = 1/64 (1%)
Query: 808 RLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREH 867
R + +R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EH
Sbjct: 11 REQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEH 69
Query: 868 IKTL 871
I+ L
Sbjct: 70 IEAL 73
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 15/84 (17%)
Query: 865 REHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRY---SK 921
RE + E +F+ LL++++ + SWS +R L+ + R+ S
Sbjct: 9 REREQHKREEAIQNFKALLSDMVRSSDV------------SWSDTRRTLRKDHRWESGSL 56
Query: 922 MPRKEREALWRRHAEEIQRKHKSS 945
+ R+E+E L+ H E + +K + S
Sbjct: 57 LEREEKEKLFNEHIEALTKKKRES 80
>pdb|1UZC|A Chain A, The Structure Of An Ff Domain From Human HypaFBP11
pdb|2KZG|A Chain A, A Transient And Low Populated Protein Folding Intermediate
At Atomic Resolution
Length = 71
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 574 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY 626
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++ F Y
Sbjct: 13 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAY 65
>pdb|2DOE|A Chain A, Solution Structure Of The Third Ff Domain Of Human
Transcription Factor Ca150
Length = 83
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 582 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 627
F E+L + S+W K K+ DPR+KA+ S S R LF++Y+
Sbjct: 23 FFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYI 68
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 731 SRWSKVKDILRDDPRYKSVRHED-REVIFNEYV 762
SRWSKVKD + DPRYK+V RE +F +Y+
Sbjct: 36 SRWSKVKDKVESDPRYKAVDSSSMREDLFKQYI 68
Score = 36.2 bits (82), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 810 KVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIK 869
K R ++ + F LL D Q+ W++ + K+E DP+ +A ++ SS RE LF+++I+
Sbjct: 13 KTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPRYKAVDS---SSMREDLFKQYIE 69
Query: 870 TL 871
+
Sbjct: 70 KI 71
>pdb|2LKS|A Chain A, Ff11-60
Length = 50
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 574 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARR 620
TKEE FKE+LKE+ V + WE+ + I+ DPR+ A+ S ++
Sbjct: 3 TKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKK 49
>pdb|1YWI|A Chain A, Structure Of The Fbp11ww1 Domain Complexed To The Peptide
Apptppplpp
pdb|1YWJ|A Chain A, Structure Of The Fbp11ww1 Domain
Length = 41
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 21/35 (60%)
Query: 350 ASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKP 384
ASV WT HK+ G YYYN T +ST+EKP
Sbjct: 5 ASVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKP 39
>pdb|2L9V|A Chain A, Nmr Structure Of The Ff Domain L24a Mutant's Folding
Transition State
Length = 49
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 574 TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARR 620
TKEE FKE LKE+ V + WE+ + I+ DPR+ A+ S ++
Sbjct: 3 TKEEAKQAFKEALKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKK 49
>pdb|2DK1|A Chain A, Solution Structure Of Ww Domain In Ww Domain Binding
Protein 4 (Wbp-4)
Length = 50
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKV 394
W T G YYY+ ++G S +EKP GF+G+ K
Sbjct: 9 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKT 44
>pdb|1ZR7|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11
pdb|2DYF|A Chain A, Solution Structure Of The First Ww Domain Of Fbp11 HYPA
(Fbp11 Ww1) Complexed With A Pl (Pplp) Motif Peptide
Ligand
Length = 30
Score = 35.0 bits (79), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 358 AWTAHKTDTGIVYYYNAVTGESTYEKP 384
+WT HK+ G YYYN T +ST+EKP
Sbjct: 2 SWTEHKSPDGRTYYYNTETKQSTWEKP 28
>pdb|1E0L|A Chain A, Fbp28ww Domain From Mus Musculus
pdb|2JUP|W Chain W, Fbp28ww2 Domain In Complex With The Pplipppp Peptide
pdb|2RLY|W Chain W, Fbp28ww2 Domain In Complex With Ptppplpp Peptide
pdb|2RM0|W Chain W, Fbp28ww2 Domain In Complex With A Ppplipppp Peptide
Length = 37
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFK 388
WT +KT G YYYN T EST+EKP K
Sbjct: 8 WTEYKTADGKTYYYNNRTLESTWEKPQELK 37
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 409 TDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 439
++W T DGK YYYN++ S+W+ P E+
Sbjct: 6 SEWTEYKTADGKTYYYNNRTLESTWEKPQEL 36
>pdb|2DK7|A Chain A, Solution Structure Of Ww Domain In Transcription
Elongation Regulator 1
Length = 73
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 400 PISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 439
P++ + GT W +V T D + ++YN ++S W P ++
Sbjct: 11 PVATAPIPGTPWCVVWTGDERVFFYNPTTRLSMWDRPDDL 50
>pdb|3KVN|X Chain X, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
pdb|3KVN|A Chain A, Crystal Structure Of The Full-Length Autotransporter Esta
From Pseudomonas Aeruginosa
Length = 632
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Query: 203 TSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMG 262
T FGD S AG P P+ P+ S S +++ PTY + P P+L Q+G
Sbjct: 17 TLVVFGDSLSDAG---QFPDPAGPAGSTSRFTNRVGPTYQNGSGEIFGPTAPMLLGNQLG 73
Query: 263 VRP 265
+ P
Sbjct: 74 IAP 76
>pdb|2YSI|A Chain A, Solution Structure Of The First Ww Domain From The Mouse
Transcription Elongation Regulator 1, Transcription
Factor Ca150
Length = 40
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 349 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 386
G+S E++ W +KT G VYYYNA T ES + KP G
Sbjct: 4 GSSGTEEI--WVENKTPDGKVYYYNARTRESAWTKPDG 39
>pdb|2NNT|A Chain A, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|B Chain B, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|C Chain C, General Structural Motifs Of Amyloid Protofilaments
pdb|2NNT|D Chain D, General Structural Motifs Of Amyloid Protofilaments
Length = 40
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFK 388
WT +KT G +YYN T EST+EKP K
Sbjct: 11 WTEYKTADGKTFYYNNRTLESTWEKPQELK 40
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 402 SMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEV 439
SM ++W T DGK +YYN++ S+W+ P E+
Sbjct: 2 SMGATAVSEWTEYKTADGKTFYYNNRTLESTWEKPQEL 39
>pdb|2KIQ|A Chain A, Solution Structure Of The Ff Domain 2 Of Human
Transcription Elongation Factor Ca150
Length = 62
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 582 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 627
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 12 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV 57
>pdb|2JUC|A Chain A, Urn1 Ff Domain Yeast
Length = 59
Score = 32.3 bits (72), Expect = 1.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 582 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY 626
F E+ + FS W + KI DP F I+ + R +LFE +
Sbjct: 12 FFELFDRYKLDKFSTWSLQSKKIENDPDFYKIRDDTVRESLFEEW 56
>pdb|2F21|A Chain A, Human Pin1 Fip Mutant
Length = 162
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
Query: 358 AWTAHKTDTGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 394
W + G VYY+N +T S +E+P+G +GEP +V
Sbjct: 10 GWEKRMSADGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 54
>pdb|2E71|A Chain A, Solution Structure Of The Second Ff Domain Of Human
Transcription Factor Ca150
Length = 83
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 582 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV 627
FK+M++E P + + + K D RFKAI+ R ALF +V
Sbjct: 23 FKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFV 68
>pdb|1ZCN|A Chain A, Human Pin1 Ng Mutant
Length = 161
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 363 KTDTGIVYYYNAVTGESTYEKPAG--------FKGEPDKV 394
+ G VYY+N +T S +E+P+G +GEP +V
Sbjct: 14 RMSNGRVYYFNHITNASQWERPSGNSSSGGKNGQGEPARV 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.127 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,411,724
Number of Sequences: 62578
Number of extensions: 964806
Number of successful extensions: 2061
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1984
Number of HSP's gapped (non-prelim): 64
length of query: 978
length of database: 14,973,337
effective HSP length: 108
effective length of query: 870
effective length of database: 8,214,913
effective search space: 7146974310
effective search space used: 7146974310
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.2 bits)