BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002026
(978 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LT25|PR40C_ARATH Pre-mRNA-processing protein 40C OS=Arabidopsis thaliana GN=MED35C
PE=1 SV=1
Length = 835
Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/779 (57%), Positives = 572/779 (73%), Gaps = 44/779 (5%)
Query: 184 FVTPQTQAPPGLLTLRTKDTSSAF-GDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYP 242
F P T APPGL+T + AF G S RP + A N G I +YP Y
Sbjct: 94 FGRPGTLAPPGLMT-----SPPAFPGSNPFSTTPRPGMSAGPAQMNPG--IHPHMYPPYH 146
Query: 243 SLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGL 302
SLP +PQG L+PP MG P PFL +P +P +P P G+ +P++ + P G
Sbjct: 147 SLP---GTPQGMWLQPPSMGGIPRAPFLSHPTTFPGSYPFPVRGI-SPNLPYSGSHPLGA 202
Query: 303 SSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRIGAS-VNEQLDAWTA 361
S + + A+PG Q + G K E + + R G+ V +LDAWTA
Sbjct: 203 SPMGSVGNVH--ALPGRQPDISPGR---------KTEELSGIDDRAGSQLVGNRLDAWTA 251
Query: 362 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKK 421
HK++ G++YYYN+VTG+STYEKP GF GEPDKVPVQP P+SME L GTDWALV+TNDGKK
Sbjct: 252 HKSEAGVLYYYNSVTGQSTYEKPPGFGGEPDKVPVQPIPVSMESLPGTDWALVSTNDGKK 311
Query: 422 YYYNSKMKVSSWQIPSEVTELKKKEDDDTLKE-QSVPNTNIVIEKGSNAISLSSPAVNTG 480
YYYN+K KVSSWQIP+EV + KK ++ ++ SVP+ ++ EKGS+ SLS+PA++ G
Sbjct: 312 YYYNNKTKVSSWQIPAEVKDFGKKLEERAMESVASVPSADLT-EKGSDLTSLSAPAISNG 370
Query: 481 GRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKG 540
GRDA +L+T++ SSALDL+KKKL DSG P +S TSE+N K EVT G
Sbjct: 371 GRDAASLKTTNF--GSSALDLVKKKLHDSGMPVSS-------TITSEANSGKTTEVTPSG 421
Query: 541 LQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKE 600
++ N+ K+KD G G +SDSSSDSED ++GP+KEEC +FKEMLKERG+APFSKWEKE
Sbjct: 422 -ESGNSTGKVKDAPGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKE 480
Query: 601 LPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDI 660
LPKI+FDPRFKAI S S RR+LFE+YVKTRAEEER+EKRAA KAAIEGF+QLL++ S DI
Sbjct: 481 LPKIIFDPRFKAIPSHSVRRSLFEQYVKTRAEEERREKRAAHKAAIEGFRQLLDDASTDI 540
Query: 661 DHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSM 720
D TDY+ FKKKWG+D RFEA++RK+RE LLNERVL LKR+AE+KAQ IRAAAAS FK+M
Sbjct: 541 DQHTDYRAFKKKWGNDLRFEAIERKEREGLLNERVLSLKRSAEQKAQEIRAAAASDFKTM 600
Query: 721 LREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAEREAKARR 780
LRE+ +I+++S WSKVKD LR++PRY+SV HEDREV + EY+ ELKAA+ + E KA R
Sbjct: 601 LRER-EISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEYIAELKAAQRGDDHEMKA-R 658
Query: 781 EEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRP 840
+E++KL+ERERE+RKRKERE QE+ERVR K+RRKEA +S+QALLVE I+DP+ASWTES+P
Sbjct: 659 DEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEASWTESKP 718
Query: 841 KLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGK 900
LE+DPQ RA+N DL+ +D+EKLFR+H+K+LYERC HDF+ LLAE +++EAA +TEDGK
Sbjct: 719 ILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQTEDGK 778
Query: 901 TVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKSSLDQNEDNHKDSKSR 959
T LNSWSTAK+VLKP+ RYSKMPR++RE +WRR+ E+I RK Q +N+++ K R
Sbjct: 779 TALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRK------QRHENYQEEKQR 831
Score = 58.2 bits (139), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 101/241 (41%), Gaps = 48/241 (19%)
Query: 582 FKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYV-------------- 627
FK ML+ER ++ S W K + +PR++++ + R + Y+
Sbjct: 597 FKTMLREREISINSHWSKVKDSLRNEPRYRSVAHED-REVFYYEYIAELKAAQRGDDHEM 655
Query: 628 KTRAEE---------------------ERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDY 666
K R EE ER ++ +K A ++ LL E D + S +
Sbjct: 656 KARDEEDKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVEKIRDPEAS--W 713
Query: 667 QTFKKKWGSDPRFEA----LDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLR 722
K DP+ A L+ D+E L + V L +A+ A A SS + L+
Sbjct: 714 TESKPILERDPQKRASNPDLEPADKEKLFRDHVKSLYERCVHDFKALLAEALSSEAATLQ 773
Query: 723 EKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVREL------KAAEEEAEREA 776
+ T + WS K +L+ D RY + +DREV++ YV ++ + +EE +R+
Sbjct: 774 TEDGKTALNSWSTAKQVLKPDIRYSKMPRQDREVVWRRYVEDISRKQRHENYQEEKQRDY 833
Query: 777 K 777
K
Sbjct: 834 K 834
>sp|Q8CGF7|TCRG1_MOUSE Transcription elongation regulator 1 OS=Mus musculus GN=Tcerg1 PE=1
SV=2
Length = 1100
Score = 228 bits (582), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 205/721 (28%), Positives = 320/721 (44%), Gaps = 135/721 (18%)
Query: 279 PFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKK 338
PF +P GMP P Q V+T A T +PG APP
Sbjct: 367 PFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGM----------APPIVPMIH 416
Query: 339 EHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK-----GEPDK 393
V +S + + WT +KT G YYYN T EST+EKP K E K
Sbjct: 417 PQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKEKLDEKIK 476
Query: 394 VPVQPT------------------------------------------PISMEHLTGTDW 411
P++ P++ + GT W
Sbjct: 477 EPIKEASEEPLPMETEEEDPKEEPVKEIKEEPKEEEMTEEEKAAQKAKPVATTPIPGTPW 536
Query: 412 ALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAIS 471
+V T D + ++YN ++S W P DD + V
Sbjct: 537 CVVWTGDERVFFYNPTTRLSMWDRP-----------DDLIGRADVDKI------------ 573
Query: 472 LSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGS 531
+ P G D LR + + L + K + S +A E
Sbjct: 574 IQEPPHKKGLEDMKKLRHPA----PTMLSIQKWQF--------------SMSAIKEEQ-- 613
Query: 532 KAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECII-------KFKE 584
E+ + ++E K K + + + + + + E +E I+ +FK+
Sbjct: 614 ---ELMEEMNEDEPIKAKKRKRDDNKDIDSEKEAAMEAEIKAARERAIVPLEARMKQFKD 670
Query: 585 MLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKA 644
ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKTRAEEER+EK+
Sbjct: 671 MLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERREKKNKIMQ 729
Query: 645 AIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAE 703
A E FK+++EE + + F K D RF+A+++ KDRE L NE V ++ +
Sbjct: 730 AKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVAAARKKEK 787
Query: 704 EKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REVIFNEYV 762
E ++ S F +L + SRWSKVKD + DPRYK+V RE +F +Y+
Sbjct: 788 EDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMREDLFKQYI 846
Query: 763 RELKA---AEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTS 819
++ +E+E E E +AR E L+ERERE++K + + +E++R R + +R+EA+ +
Sbjct: 847 EKIAKNLDSEKEKELERQARIEAS--LREREREVQKARSEQTKEIDREREQHKREEAIQN 904
Query: 820 FQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDF 879
F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L ++ F
Sbjct: 905 FKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEALTKKKREHF 963
Query: 880 RGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQ 939
R LL E T+ ++W K+++K +PR K +R+ +R EE
Sbjct: 964 RQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFSSSDRKK--QREFEEYI 1010
Query: 940 R 940
R
Sbjct: 1011 R 1011
Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 76/323 (23%)
Query: 700 RAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFN 759
+AA E+A A FK ML E+G ++ S W K + DPRY + ++R+ +F+
Sbjct: 651 KAARERAIVPLEARMKQFKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFD 709
Query: 760 EYVRELKAAEEEAEREAKAR--REEQEKLKE---------------------REREMRKR 796
+YV+ +A EE E++ K +E+ +K+ E R + + K
Sbjct: 710 QYVK-TRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKM 768
Query: 797 KEREE---------QEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ 847
K+RE ++ E+ K R ++ + F LL D Q+ W++ + K+E DP+
Sbjct: 769 KDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPR 828
Query: 848 GRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETE---------- 897
+A ++ SS RE LF+++I+ + + + L EA+ +E E
Sbjct: 829 YKAVDS---SSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQ 885
Query: 898 ------------------DGKTVLN--------SWSTAKRVLKPEPRY---SKMPRKERE 928
+ K +L+ SWS +R L+ + R+ S + R+E+E
Sbjct: 886 TKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 945
Query: 929 ALWRRHAEEIQRKHKSSLDQNED 951
L+ H E + +K + Q D
Sbjct: 946 KLFNEHIEALTKKKREHFRQLLD 968
Score = 38.9 bits (89), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 357 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK 388
+ W +KT G VYYYNA T ES + KP G K
Sbjct: 135 EIWVENKTPDGKVYYYNARTRESAWTKPDGVK 166
>sp|O14776|TCRG1_HUMAN Transcription elongation regulator 1 OS=Homo sapiens GN=TCERG1 PE=1
SV=2
Length = 1098
Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 205/728 (28%), Positives = 323/728 (44%), Gaps = 135/728 (18%)
Query: 272 YPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAP 331
+P PF +P GMP P Q V+T A T +PG AP
Sbjct: 358 FPPVMVPPFRVPLPGMPIPLPGVAMMQIVSCPYVKTVATTKTGVLPGM----------AP 407
Query: 332 PSGTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK--- 388
P V +S + + WT +KT G YYYN T EST+EKP K
Sbjct: 408 PIVPMIHPQVAIAASPATLAGATAVSEWTEYKTADGKTYYYNNRTLESTWEKPQELKEKE 467
Query: 389 ----------GEPDKVPV----------------------------------QPTPISME 404
EP + P+ + P++
Sbjct: 468 KLEEKIKEPIKEPSEEPLPMETEEEDPKEEPIKEIKEEPKEEEMTEEEKAAQKAKPVATA 527
Query: 405 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIE 464
+ GT W +V T D + ++YN ++S W P DD + V
Sbjct: 528 PIPGTPWCVVWTGDERVFFYNPTTRLSMWDRP-----------DDLIGRADVDKI----- 571
Query: 465 KGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAA 524
+ P G + LR + + L + K + S +A
Sbjct: 572 -------IQEPPHKKGMEELKKLRHPT----PTMLSIQKWQF--------------SMSA 606
Query: 525 TSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECII---- 580
E E+ + ++E K K + + + + + + E +E I+
Sbjct: 607 IKEEQ-----ELMEEINEDEPVKAKKRKRDDNKDIDSEKEAAMEAEIKAARERAIVPLEA 661
Query: 581 ---KFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKE 637
+FK+ML ERGV+ FS WEKEL KIVFDPR+ + + R+ +F++YVKTRAEEER+E
Sbjct: 662 RMKQFKDMLLERGVSAFSTWEKELHKIVFDPRYLLLNPKE-RKQVFDQYVKTRAEEERRE 720
Query: 638 KRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVL 696
K+ A E FK+++EE + + F K D RF+A+++ KDRE L NE V
Sbjct: 721 KKNKIMQAKEDFKKMMEEAK--FNPRATFSEFAAKHAKDSRFKAIEKMKDREALFNEFVA 778
Query: 697 PLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-RE 755
++ +E ++ S F +L + SRWSKVKD + DPRYK+V RE
Sbjct: 779 AARKKEKEDSKTRGEKIKSDFFELL-SNHHLDSQSRWSKVKDKVESDPRYKAVDSSSMRE 837
Query: 756 VIFNEYVRELKA---AEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVR 812
+F +Y+ ++ +E+E E E +AR E L+ERERE++K + + +E++R R + +
Sbjct: 838 DLFKQYIEKIAKNLDSEKEKELERQARIEAS--LREREREVQKARSEQTKEIDREREQHK 895
Query: 813 RKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLY 872
R+EA+ +F+ALL + ++ SW+++R L KD + + + L+ ++EKLF EHI+ L
Sbjct: 896 REEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSL-LEREEKEKLFNEHIEALT 954
Query: 873 ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWR 932
++ FR LL E T+ ++W K+++K +PR K +R+ +
Sbjct: 955 KKKREHFRQLLDET-----------SAITLTSTWKEVKKIIKEDPRCIKFSSSDRKK--Q 1001
Query: 933 RHAEEIQR 940
R EE R
Sbjct: 1002 REFEEYIR 1009
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 76/323 (23%)
Query: 700 RAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFN 759
+AA E+A A FK ML E+G ++ S W K + DPRY + ++R+ +F+
Sbjct: 649 KAARERAIVPLEARMKQFKDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNPKERKQVFD 707
Query: 760 EYVRELKAAEEEAEREAKAR--REEQEKLKE---------------------REREMRKR 796
+YV+ +A EE E++ K +E+ +K+ E R + + K
Sbjct: 708 QYVK-TRAEEERREKKNKIMQAKEDFKKMMEEAKFNPRATFSEFAAKHAKDSRFKAIEKM 766
Query: 797 KEREE---------QEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ 847
K+RE ++ E+ K R ++ + F LL D Q+ W++ + K+E DP+
Sbjct: 767 KDREALFNEFVAAARKKEKEDSKTRGEKIKSDFFELLSNHHLDSQSRWSKVKDKVESDPR 826
Query: 848 GRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETE---------- 897
+A ++ SS RE LF+++I+ + + + L EA+ +E E
Sbjct: 827 YKAVDS---SSMREDLFKQYIEKIAKNLDSEKEKELERQARIEASLREREREVQKARSEQ 883
Query: 898 ------------------DGKTVLN--------SWSTAKRVLKPEPRY---SKMPRKERE 928
+ K +L+ SWS +R L+ + R+ S + R+E+E
Sbjct: 884 TKEIDREREQHKREEAIQNFKALLSDMVRSSDVSWSDTRRTLRKDHRWESGSLLEREEKE 943
Query: 929 ALWRRHAEEIQRKHKSSLDQNED 951
L+ H E + +K + Q D
Sbjct: 944 KLFNEHIEALTKKKREHFRQLLD 966
Score = 38.9 bits (89), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 357 DAWTAHKTDTGIVYYYNAVTGESTYEKPAGFK 388
+ W +KT G VYYYNA T ES + KP G K
Sbjct: 135 EIWVENKTPDGKVYYYNARTRESAWTKPDGVK 166
>sp|B6EUA9|PR40A_ARATH Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A
PE=1 SV=1
Length = 958
Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 124/427 (29%), Positives = 194/427 (45%), Gaps = 48/427 (11%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W H + G YYYN T +S +EKP TP+ + T W TT +
Sbjct: 190 WQEHTSADGRKYYYNKRTKQSNWEKPLELM----------TPLERADAS-TVWKEFTTPE 238
Query: 419 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVN 478
GKKYYYN K S W IP ED +EQ+ + EK S + + S+P +
Sbjct: 239 GKKYYYNKVTKESKWTIP---------EDLKLAREQA----QLASEKTSLSEAGSTPLSH 285
Query: 479 TGGRD---ATALRTSSMPGSSSALDLIKKKLQDSGT-------PTASPA-PVSSAAATSE 527
A + TS +P +SSAL +G P+ +P P S A + +E
Sbjct: 286 HAASSSDLAVSTVTSVVPSTSSALTGHSSSPIQAGLAVPVTRPPSVAPVTPTSGAISDTE 345
Query: 528 SNGSKAVEVTVKGL---------QNENTKDKLKDINGDGTMS--DSSSDSEDGETGPTKE 576
+ K ++ +G QN ++K +NG +S ++ E+ TK+
Sbjct: 346 ATTIKGDNLSSRGADDSNDGATAQNNEAENKEMSVNGKANLSPAGDKANVEEPMVYATKQ 405
Query: 577 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERK 636
E FK +L+ V WE+ L +IV D R+ A+++ R+ F Y+ R + E +
Sbjct: 406 EAKAAFKSLLESVNVHSDWTWEQTLKEIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAE 465
Query: 637 EKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERV 695
E+R QK A E F ++LEE E++ S + + +D RF+A+DR +DRE L + +
Sbjct: 466 ERRRRQKKAREEFVKMLEEC-EELSSSLKWSKAMSLFENDQRFKAVDRPRDREDLFDNYI 524
Query: 696 LPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDRE 755
+ L+R EKA + ++ L I ++W K++D L DD R + DR
Sbjct: 525 VELERKEREKAAEEHRQYMADYRKFLETCDYIKAGTQWRKIQDRLEDDDRCSCLEKIDRL 584
Query: 756 VIFNEYV 762
+ F EY+
Sbjct: 585 IGFEEYI 591
Score = 35.8 bits (81), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 95/201 (47%), Gaps = 17/201 (8%)
Query: 582 FKEMLKERGVAPF----SKWEKELPKIVFDPRFKAIQSQ---SARRALFERYVKTRAEEE 634
F+ +L+E A + W ++ P+++A+ S S + LFE V E++
Sbjct: 620 FRTLLEEHVAAGILTAKTYWLDYCIELKDLPQYQAVASNTSGSTPKDLFED-VTEELEKQ 678
Query: 635 RKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNER 694
E ++ K A++ K + VS S ++ FK D + + + +L+ ++
Sbjct: 679 YHEDKSYVKDAMKSRK--ISMVS-----SWLFEDFKSAISEDLSTQQISDINLKLIYDDL 731
Query: 695 VLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED- 753
V +K E++A+ ++ A F ++L +IT++S W K ++ + Y+S+ E
Sbjct: 732 VGRVKEKEEKEARKLQ-RLAEEFTNLLHTFKEITVASNWEDSKQLVEESQEYRSIGDESV 790
Query: 754 REVIFNEYVRELKAAEEEAER 774
+ +F EY+ L+ +E ER
Sbjct: 791 SQGLFEEYITSLQEKAKEKER 811
>sp|Q9R1C7|PR40A_MOUSE Pre-mRNA-processing factor 40 homolog A OS=Mus musculus GN=Prpf40a
PE=1 SV=1
Length = 953
Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 120/465 (25%), Positives = 209/465 (44%), Gaps = 84/465 (18%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
WT HK+ G YYYN T +ST+EKP K +++ L+ W ++
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQL-----------LSKCPWKEYKSDS 194
Query: 419 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKG----SNAISLSS 474
GK YYYNS+ K S W P E+ +L+ + N ++ G SN ++
Sbjct: 195 GKPYYYNSQTKESRWAKPKELEDLEGYQ-------------NTIVAGGLITKSNLHAMIK 241
Query: 475 PAVNTGGRDATA-----LRTSSMPGSSSALDLIKKKLQD---------------SGTPT- 513
++ + T + T+ +P + S + + S TPT
Sbjct: 242 AEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAANANTSTTPTN 301
Query: 514 ------ASPAP-VSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGD---------- 556
+P P V+S AT+ N + T + Q NT ++D++GD
Sbjct: 302 TVGSVPVAPEPEVTSIVATAVDNENTVTVSTEEQAQLANTT-AIQDLSGDISSNTGEEPA 360
Query: 557 --GTMSDSSSDSEDGETGP--------TKEECIIKFKEMLKERGVAPFSKWEKELPKIVF 606
T+SD + E+ E+ P TKEE FKE+LKE+ V + WE+ + I+
Sbjct: 361 KQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIIN 420
Query: 607 DPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDY 666
DPR+ A+ S ++ F Y +EE++E R+ K A E F++ LE E + +T Y
Sbjct: 421 DPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLEN-HEKMTSTTRY 479
Query: 667 QTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGD 726
+ ++ +G + A+ +DR + + + L + +E+A+ +R + K++L +
Sbjct: 480 KKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMAN 539
Query: 727 ITLSSRWSKVKDILRDDPRY------KSVRHEDREVIFNEYVREL 765
+T S+ WS+ + L D+P + +++ ED + F E++R L
Sbjct: 540 VTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRAL 584
>sp|F4JCC1|PR35B_ARATH Pre-mRNA-processing protein 40B OS=Arabidopsis thaliana GN=PRP40B
PE=1 SV=1
Length = 992
Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 122/451 (27%), Positives = 201/451 (44%), Gaps = 57/451 (12%)
Query: 356 LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVT 415
L W H + G Y++N T +ST+EKP ++ + TDW +
Sbjct: 206 LTDWVEHTSADGRKYFFNKRTKKSTWEKPVELMTLFERADAR-----------TDWKEHS 254
Query: 416 TNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLK---EQSVPNTNIVIEKGSNA--- 469
+ DG+KYYYN K S+W +P E+ ++++ + +++ + + + + V+ + A
Sbjct: 255 SPDGRKYYYNKITKQSTWTMPEEMKIVREQAEIASVQGPHAEGIIDASEVLTRSDTASTA 314
Query: 470 --ISLSSPAVNTGGRDATALRT-----SSMPGSSSALDLIKKKLQDSGTPTASPAPVSSA 522
L S + G + L + +S+PGSSS ++ + + +Q S T+ S
Sbjct: 315 APTGLPSQTSTSEGVEKLTLTSDLKQPASVPGSSSPVENVDR-VQMSADETSQLCDTSET 373
Query: 523 AATS----ESNGSKAVEVTVKGLQNENTKDKLKDIN---GDGT--------MSDSS---S 564
S E++ + VE + N D + N G G+ M +S S
Sbjct: 374 DGLSVPVTETSAATLVEKDEISVGNSGDSDDMSTKNANQGSGSGPKESQKPMVESEKVES 433
Query: 565 DSEDGETGP------TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSA 618
+E+ + K E + FK +LK V WE+ + +I+ D R+ A+++
Sbjct: 434 QTEEKQIHQESFSFNNKLEAVDVFKSLLKSAKVGSDWTWEQAMREIINDKRYGALRTLGE 493
Query: 619 RRALFERYV---KTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGS 675
R+ F ++ K AEEER A QK E FK++LEE E + ST + +
Sbjct: 494 RKQAFNEFLLQTKRAAEEER---LARQKKLYEDFKRMLEECVE-LTPSTRWSKTVTMFED 549
Query: 676 DPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWS 734
D RF+AL+R KDR + + V LK KA R +K L I +S+W
Sbjct: 550 DERFKALEREKDRRNIFEDHVSELKEKGRVKALEDRKRNIIEYKRFLESCNFIKPNSQWR 609
Query: 735 KVKDILRDDPRYKSVRHEDREVIFNEYVREL 765
KV+D L D R + D+ IF EY+R+L
Sbjct: 610 KVQDRLEVDERCSRLEKIDQLEIFQEYLRDL 640
>sp|Q5VWI1|TCRGL_HUMAN Transcription elongation regulator 1-like protein OS=Homo sapiens
GN=TCERG1L PE=2 SV=2
Length = 586
Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 147/319 (46%), Gaps = 77/319 (24%)
Query: 400 PISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNT 459
P++ + G+ W +V T D + +++N M +S W+ P +LK + D
Sbjct: 334 PVASTPVPGSPWCVVWTGDDRVFFFNPTMHLSVWEKP---MDLKDRGD-----------L 379
Query: 460 NIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPV 519
N +IE + L +PA +
Sbjct: 380 NRIIEDPPHKRKLEAPATD----------------------------------------- 398
Query: 520 SSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDG--ETGPTK-- 575
+S ++SE N ++++ K K G G+ + ED T P +
Sbjct: 399 NSDGSSSEDNR-----------EDQDVKTKRNRTEGCGSPKPEEAKREDKGTRTPPPQIL 447
Query: 576 ---EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAE 632
EE + F++ML ERGV+ FS WEKEL KIVFDPR+ + S+ R+ +FE++VKTR +
Sbjct: 448 LPLEERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEE-RKQIFEQFVKTRIK 506
Query: 633 EERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLL 691
EE KEK++ A E FK+LLEE + T ++ F +K+G D RF + RKD+E
Sbjct: 507 EEYKEKKSKLLLAKEEFKKLLEE--SKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFF 564
Query: 692 NERVLPLKRAAEEKAQAIR 710
N+ +L LK+ +E +R
Sbjct: 565 NQFILILKKRDKENRLRLR 583
Score = 37.4 bits (85), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 714 ASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVR-ELKAAEEEA 772
+ F+ ML E+G ++ S W K + DPRY + E+R+ IF ++V+ +K +E
Sbjct: 454 VTHFRDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKTRIKEEYKEK 512
Query: 773 EREAKARREEQEKLKEREREMRKRKEREEQEM----ERVRLKVRRKEAVTSF-QALLVET 827
+ + +EE +KL E + + +E E +R RL +RK+ F Q +L+
Sbjct: 513 KSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKYGRDQRFRLVQKRKDQEHFFNQFILILK 572
Query: 828 IKDPQASWTESRPKLEK 844
+D E+R +L K
Sbjct: 573 KRD-----KENRLRLRK 584
>sp|Q3B807|TCRGL_MOUSE Transcription elongation regulator 1-like protein OS=Mus musculus
GN=Tcerg1l PE=2 SV=3
Length = 590
Score = 106 bits (265), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 60/136 (44%), Positives = 87/136 (63%), Gaps = 4/136 (2%)
Query: 576 EECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEER 635
EE + F++ML ERGV+ FS WEKEL KIVFDPR+ + S+ R+ +FE++VKTR +EE
Sbjct: 455 EERVTHFRDMLLERGVSAFSTWEKELHKIVFDPRYLLLNSEE-RKQIFEQFVKTRIKEEY 513
Query: 636 KEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD-RKDRELLLNER 694
KE+++ A E FK+LLEE + T ++ F +K G D RF + RKD+E N+
Sbjct: 514 KERKSKLLLAKEEFKKLLEE--SKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQF 571
Query: 695 VLPLKRAAEEKAQAIR 710
+L LK+ +E +R
Sbjct: 572 ILILKKRDKENRLRLR 587
Score = 44.7 bits (104), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 714 ASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEAE 773
+ F+ ML E+G ++ S W K + DPRY + E+R+ IF ++V+ + EE E
Sbjct: 458 VTHFRDMLLERG-VSAFSTWEKELHKIVFDPRYLLLNSEERKQIFEQFVKT-RIKEEYKE 515
Query: 774 REAKAR--REEQEKLKEREREMRKRKEREEQEM----ERVRLKVRRKEAVTSF-QALLVE 826
R++K +EE +KL E + + +E E +R RL +RK+ F Q +L+
Sbjct: 516 RKSKLLLAKEEFKKLLEESKVSPRTTFKEFAEKHGRDQRFRLVQKRKDQEHFFNQFILIL 575
Query: 827 TIKDPQASWTESRPKLEK 844
+D E+R +L K
Sbjct: 576 KKRD-----KENRLRLRK 588
Score = 36.2 bits (82), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 400 PISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVT---ELKKKEDD 448
P++ + G+ W +V T D + +++N M++S W+ P ++ +LK+ +D
Sbjct: 338 PVASTPVPGSPWCVVWTGDDRVFFFNPTMQLSVWEKPVDLQNRGDLKRIIED 389
>sp|O75400|PR40A_HUMAN Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A
PE=1 SV=2
Length = 957
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 129/519 (24%), Positives = 227/519 (43%), Gaps = 79/519 (15%)
Query: 286 GMPNPSVSQIDAQP---PGLSSVRTAAATS---------HSAIPGHQLVGTSGNTEAPPS 333
GM +SQ QP PG++S+ AA T+ H + G NTE S
Sbjct: 110 GMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYY---NTETKQS 166
Query: 334 GTDKKEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDK 393
+K + + + ++ + W +K+D+G YYYN+ T ES + K
Sbjct: 167 TWEKPDDLKTPAEQLLSKC-----PWKEYKSDSGKPYYYNSQTKESRWAK---------- 211
Query: 394 VPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKE 453
P +E L G +V + K ++ +K E K+E+ T
Sbjct: 212 ------PKELEDLEGYQNTIVAGSLITKSNLHAMIKAE---------ESSKQEECTTTST 256
Query: 454 QSVPNTNIVIEKGS-NAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTP 512
VP T I + A ++ V A A ++ S+SA + + SGT
Sbjct: 257 APVPTTEIPTTMSTMAAAEAAAAVVAAAAAAAAAAAAANANASTSASNTV------SGTV 310
Query: 513 TASPAP-VSSAAATSESNGSKAVEVTVKGLQNENT---KDKLKDINGDG--------TMS 560
P P V+S AT N + T + Q +T +D+ +++ + T++
Sbjct: 311 PVVPEPEVTSIVATVVDNENTVTISTEEQAQLTSTPAIQDQSVEVSSNTGEETSKQETVA 370
Query: 561 DSSSDSEDGETGP--------TKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKA 612
D + E+ E+ P TKEE FKE+LKE+ V + WE+ + I+ DPR+ A
Sbjct: 371 DFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSA 430
Query: 613 IQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKK 672
+ S ++ F Y +EE++E R+ K A E F++ LE E + +T Y+ ++
Sbjct: 431 LAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLEN-HEKMTSTTRYKKAEQM 489
Query: 673 WGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSR 732
+G + A+ +DR + + + L + +E+A+ +R + K++L ++T S+
Sbjct: 490 FGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTT 549
Query: 733 WSKVKDILRDDPRY------KSVRHEDREVIFNEYVREL 765
WS+ + L D+P + +++ ED + F E++R L
Sbjct: 550 WSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRAL 588
>sp|P34600|YO61_CAEEL WW domain-containing protein ZK1098.1 OS=Caenorhabditis elegans
GN=ZK1098.1 PE=1 SV=2
Length = 724
Score = 90.1 bits (222), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 127/574 (22%), Positives = 226/574 (39%), Gaps = 149/574 (25%)
Query: 229 SGSAIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMP 288
+ + IQ + +PP+G Q PLL+ P V P+ AA P P+
Sbjct: 15 AAANIQQVLLNQRFGMPPVGSIAQVPLLQMPTHSV-----VAPHVAAPTRPSPMLV---- 65
Query: 289 NPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDKKEHVHDVSSRI 348
PPG+ SHS+ P +D
Sbjct: 66 ----------PPGM-----GIDESHSS---------------PSVESD------------ 83
Query: 349 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTG 408
W+ H + G YY+N VT ++++ KP K P++ + S + G
Sbjct: 84 ----------WSVHTNEKGTPYYHNRVTKQTSWIKPDVLK-----TPLERS-TSGQPQQG 127
Query: 409 TDWALVTTNDGKKYYYNSKMKVSSWQIPS--EVTELKKKEDDDTLKEQSVPNTNIVIEKG 466
W ++DGK YYYN+ K + W P E+T+ ++K
Sbjct: 128 Q-WKEFMSDDGKPYYYNTLTKKTQWVKPDGEEITKGEQK--------------------- 165
Query: 467 SNAISLSSPAVNTGGRDATALRTS-SMPGSSSALDLIKKKLQDSGTPTASP-APVSSAAA 524
PA D AL + + S LD K T + P P+ S
Sbjct: 166 --------PAAKAATVDTVALAAAVQQKKAESDLDKAMK-----ATLASMPNVPLPSEKK 212
Query: 525 TSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKE 584
ES EV +K Q+E ++ L+D DG ++ + +
Sbjct: 213 EEESVND---EVELKKRQSERFRELLRDKYNDGKITTNCN-------------------- 249
Query: 585 MLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKA 644
W++ + I DPRF+ + S ++ LF + R +EER EKR A K
Sbjct: 250 ------------WDQAVKWIQNDPRFRILNKVSEKKQLFNAWKVQRGKEERDEKRLAIKK 297
Query: 645 AIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEE 704
+ E ++ L+E + + S YQ + +P + A++ +DR+ + + + + R +E
Sbjct: 298 SKEDLEKFLQEHPK-MKESLKYQKASDIFSKEPLWIAVNDEDRKEIFRDCIDFVARRDKE 356
Query: 705 KAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRY---KSVRHEDRE---VIF 758
K + R ++F +L+ IT + W++ + IL ++P++ K + D+E +F
Sbjct: 357 KKEEDRKRDIAAFSHVLQSMEQITYKTTWAQAQRILYENPQFAERKDLHFMDKEDALTVF 416
Query: 759 NEYVRELKAAEEEAEREAKAR-REEQEKLKERER 791
+++++ + +E + + + R R +Q K++E R
Sbjct: 417 EDHIKQAEKEHDEEKEQEEKRLRRQQRKVREEYR 450
Score = 41.6 bits (96), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 16/185 (8%)
Query: 584 EMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQ--SARRALFERYVKTRAEEERKEKRA 640
E L +RG + S W P I D RF+ + Q S+ LF+ +V+ E+ +++R
Sbjct: 454 ESLHKRGELTSMSLWTSLFPIISTDTRFELMLFQPGSSPLDLFKFFVEDLKEQYTEDRRL 513
Query: 641 AQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLK- 699
K++L E + +T+Y+ F S + +D + +L N + +
Sbjct: 514 --------IKEILTEKGCQVIATTEYREFSDWVVSHEKGGKVDHGNMKLCYNSLIEKAES 565
Query: 700 RAAEEKAQAIRAA--AASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHED-REV 756
+A +E+ +++R S F+++L+E ++ S W+ +K + D Y ++ ++D RE
Sbjct: 566 KAKDEEKESLRRKRRLESEFRNLLKE-HNVDKDSEWTVIKPKIEKDKAYLAMENDDERET 624
Query: 757 IFNEY 761
FN Y
Sbjct: 625 AFNHY 629
>sp|O14176|PRP40_SCHPO Pre-mRNA-processing protein prp40 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=prp40 PE=1 SV=1
Length = 695
Score = 70.5 bits (171), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 122/529 (23%), Positives = 211/529 (39%), Gaps = 100/529 (18%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W KT+ VYYYN+VT +S +EKP + +K L+ W T D
Sbjct: 36 WHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEK-----------KLSKLAWKEYATAD 84
Query: 419 GKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVN 478
GKKY+YN + S W IP E E EQ + I+ N ++ S +
Sbjct: 85 GKKYWYNVNTRESVWDIPDEYKAALVDE-----PEQQKKALSSKIKSNDNKPAVQS--IQ 137
Query: 479 TGGRDATALRTSSMPGSSSA-----------LDLIKKK-----------LQDSGTPTASP 516
G D A SS P + ++ +++K ++ T A+
Sbjct: 138 RHGPDVAA--PSSQPAKDQSQQISQGSHKRTINFVQQKDKRQKRSNDYQHENYDTYEAAE 195
Query: 517 APVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKD-----INGDGTMSDSSSDSEDGE- 570
+ N S E TV+ L + +KD D + + +D D E
Sbjct: 196 RAFFKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPWHRKCAFDAYILNYLTDQSDAEK 255
Query: 571 ---TGPTKEECIIKFKEMLKERG-VAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERY 626
T KE F EMLK + ++ W + P F A S++ ++ LF Y
Sbjct: 256 NRVTKIRKE-----FIEMLKSSDKIHSYTLWRTVKNEFSSHPAFNATSSETEQQQLFFEY 310
Query: 627 VKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRF------E 680
+ E+E++ ++ +K A++ F LL + + + T + + K+ DPR+ +
Sbjct: 311 KQKLLEDEKQLEKDRRKEALDDFCSLLRNM--NFEPYTRWSVAQAKFDQDPRYTRNSNMK 368
Query: 681 ALDRKDRELLLNERVLPLKR-------AAEEKAQAIRAAAASSFKSML---REKGDITLS 730
L + D + + V L+R +++ I +F+++L R + ITL
Sbjct: 369 YLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDLRVQKKITLR 428
Query: 731 SRWSKVKDILRDDPRY----------------------KSVRHEDREVIFNEY-VRELKA 767
++W ++ I++DDPRY +++ E R ++ + V ++
Sbjct: 429 TKWKELYPIIKDDPRYLNLLGQSGSTPLDLFWDTIVDLENMYREKRNLVLDCLEVLQISV 488
Query: 768 AEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEA 816
+ E AR EKLK+RE ++ E+ + R+R K K+A
Sbjct: 489 DDTSNIPEIIARL--SEKLKDREESEAVTEDLIEEVVNRLRDKAIHKKA 535
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 119/524 (22%), Positives = 204/524 (38%), Gaps = 96/524 (18%)
Query: 379 STYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 438
S Y++ GF + P+ +DW V T D + YYYNS + S W+ P E
Sbjct: 9 SEYDETEGFTSNQEGPSAAPSKT-----VASDWHEVKTEDSRVYYYNSVTRKSVWEKPEE 63
Query: 439 V-TELKKKEDDDTLKEQSVPN-----TNIVIEKGSNAI--SLSSPAVNTGGRDATALRTS 490
+ + +KK KE + + N+ + I + V+ + AL +
Sbjct: 64 LMNDFEKKLSKLAWKEYATADGKKYWYNVNTRESVWDIPDEYKAALVDEPEQQKKALSSK 123
Query: 491 SMPGSSS-ALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDK 549
+ A+ I++ D P++ PA S + S+ T+ +Q KDK
Sbjct: 124 IKSNDNKPAVQSIQRHGPDVAAPSSQPAKDQSQQISQGSHKR-----TINFVQQ---KDK 175
Query: 550 LKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPR 609
+ + D E+ +T E KF L V P WE+ + ++
Sbjct: 176 RQKRSNDYQ-------HENYDTYEAAERAFFKF---LDSHNVNPSWTWEQTVRELCDAKG 225
Query: 610 FKAIQSQSARRALFERYV------KTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHS 663
+ ++ R+ F+ Y+ ++ AE+ R K +K IE K S+ I
Sbjct: 226 YYVMKDPWHRKCAFDAYILNYLTDQSDAEKNRVTK--IRKEFIEMLKS-----SDKIHSY 278
Query: 664 TDYQTFKKKWGSDPRFEALDRK-DRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLR 722
T ++T K ++ S P F A + +++ L E L ++ + R A F S+LR
Sbjct: 279 TLWRTVKNEFSSHPAFNATSSETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLR 338
Query: 723 EKGDITLSSRWSKVKDILRDDPRY------KSVRHEDREVIFNEYVRELKAAEEEAEREA 776
+ +RWS + DPRY K + D V F ++V+ L
Sbjct: 339 -NMNFEPYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDHVKHL----------- 386
Query: 777 KARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQALL----VETIKDPQ 832
ERE K+++++E R+ K R +F+ALL V+ +
Sbjct: 387 -------------EREYILDKQKQKKEKHRIERKNR-----DAFRALLQDLRVQKKITLR 428
Query: 833 ASWTESRPKLEKDPQ-----GRATNADLD-----SSDREKLFRE 866
W E P ++ DP+ G++ + LD D E ++RE
Sbjct: 429 TKWKELYPIIKDDPRYLNLLGQSGSTPLDLFWDTIVDLENMYRE 472
Score = 36.6 bits (83), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 32/151 (21%)
Query: 792 EMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQ-GRA 850
E +++ +E+++E K RRKEA+ F +LL +P W+ ++ K ++DP+ R
Sbjct: 309 EYKQKLLEDEKQLE----KDRRKEALDDFCSLLRNMNFEPYTRWSVAQAKFDQDPRYTRN 364
Query: 851 TNAD-LDSSDREKLFREHIKTL-----------------YERCAHD-FRGLLAEVITAEA 891
+N L D F +H+K L ER D FR LL ++
Sbjct: 365 SNMKYLSKLDALVAFEDHVKHLEREYILDKQKQKKEKHRIERKNRDAFRALLQDL----- 419
Query: 892 AAQETEDGKTVLNSWSTAKRVLKPEPRYSKM 922
+ T+ W ++K +PRY +
Sbjct: 420 ---RVQKKITLRTKWKELYPIIKDDPRYLNL 447
>sp|Q6NWY9|PR40B_HUMAN Pre-mRNA-processing factor 40 homolog B OS=Homo sapiens GN=PRPF40B
PE=1 SV=1
Length = 871
Score = 69.3 bits (168), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 102/200 (51%), Gaps = 7/200 (3%)
Query: 569 GETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 628
G + +E+ FKE+L+++ V + WE+ + +V DPR+ A+ S ++ F Y
Sbjct: 270 GLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKA 329
Query: 629 TRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRE 688
R +EE++E R K A + + LE+ E + +T Y+ ++ +G + + +DR+
Sbjct: 330 QREKEEKEEARLRAKEAKQTLQHFLEQ-HERMTSTTRYRRAEQTFGELEVWAVVPERDRK 388
Query: 689 LLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRY-- 746
+ ++ + L + +E+A+ +R + KS+L + + WS+ + L D+P +
Sbjct: 389 EVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQ 448
Query: 747 ----KSVRHEDREVIFNEYV 762
+++ ED + F E++
Sbjct: 449 DHQLQNMDKEDALICFEEHI 468
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W+ H G +YYYNA +S +EKP+ K + + + L+ W ++
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELL-----------LSQCPWKEYKSDT 146
Query: 419 GKKYYYNSKMKVSSWQIPSEVTELK 443
GK YYYN++ K S W P ++ +L+
Sbjct: 147 GKPYYYNNQSKESRWTRPKDLDDLE 171
>sp|Q80W14|PR40B_MOUSE Pre-mRNA-processing factor 40 homolog B OS=Mus musculus GN=Prpf40b
PE=2 SV=2
Length = 870
Score = 67.8 bits (164), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 102/200 (51%), Gaps = 7/200 (3%)
Query: 569 GETGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 628
G + +E+ FKE+L+++ V + WE+ + +V DPR+ A+ S ++ F Y
Sbjct: 270 GLSWSNREKAKQAFKELLRDKAVPSNASWEQAMKMVVTDPRYSALPKLSEKKQAFNAYKA 329
Query: 629 TRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRE 688
R +EE++E R K A + + LE+ E + +T Y+ ++ +G + + ++R+
Sbjct: 330 QREKEEKEEARLRAKEAKQTLQHFLEQ-HERMTSTTRYRRAEQTFGDLEVWAVVPERERK 388
Query: 689 LLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRY-- 746
+ ++ + L + +E+A+ +R + KS+L + + WS+ + L D+P +
Sbjct: 389 EVYDDVLFFLAKKEKEQAKQLRRRNIQALKSILDGMSSVNFQTTWSQAQQYLMDNPSFAQ 448
Query: 747 ----KSVRHEDREVIFNEYV 762
+++ ED + F E++
Sbjct: 449 DQQLQNMDKEDALICFEEHI 468
Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W+ H G +YYYNA +S +EKP+ K + + + L+ W ++
Sbjct: 98 WSEHVAPDGRIYYYNADDKQSVWEKPSVLKSKAELL-----------LSQCPWKEYKSDT 146
Query: 419 GKKYYYNSKMKVSSWQIPSEVTELK 443
GK YYYN++ + S W P ++ +L+
Sbjct: 147 GKPYYYNNQSQESRWTRPKDLDDLE 171
>sp|P33203|PRP40_YEAST Pre-mRNA-processing protein PRP40 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PRP40 PE=1 SV=1
Length = 583
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 97/421 (23%), Positives = 179/421 (42%), Gaps = 59/421 (14%)
Query: 356 LDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTD--WAL 413
+ W K +G +YYYN +T +ST+EKP IS E L + W
Sbjct: 1 MSIWKEAKDASGRIYYYNTLTKKSTWEKPKEL-------------ISQEELLLRENGWKA 47
Query: 414 VTTNDGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLS 473
T DGK YYYN + +SW IP+ KK E K +V + + N I+L+
Sbjct: 48 AKTADGKVYYYNPTTRETSWTIPAFE---KKVEPIAEQKHDTVSHAQV----NGNRIALT 100
Query: 474 SPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSGTPTASPAPVSSAAATSESNGSKA 533
+ GR T S ++S L ++++ ++ + ++ S
Sbjct: 101 AGEKQEPGR--TINEEESQYANNSKLLNVRRRTKEEAEKEFITMLKENQVDSTWSFSRII 158
Query: 534 VEVTVKGLQNENTKDK--LKDINGDGTMSDSSSDS---EDGETGPTKEECIIKFKEMLKE 588
E+ + + D K + +S+ S+D E ET KE F++ML+
Sbjct: 159 SELGTRDPRYWMVDDDPLWKKEMFEKYLSNRSADQLLKEHNETSKFKE----AFQKMLQN 214
Query: 589 RG-VAPFSKWEKELPKIVFDPRFK-AIQSQSARRALFERYVKTRAEEERKEKRAAQKAAI 646
+ +++W I +P +K ++ ++ +R F+ Y+ T + +++ K+ + A+
Sbjct: 215 NSHIKYYTRWPTAKRLIADEPIYKHSVVNEKTKRQTFQDYIDTLIDTQKESKKKLKTQAL 274
Query: 647 EGFKQLLEEV-----SEDI---DHSTDYQTFK--KKWGSDPRFEALDRKDRELLLNER-- 694
+ ++ L + SE ++ F K++ ++ F+ L +D +LNE
Sbjct: 275 KELREYLNGIITTSSSETFITWQQLLNHYVFDKSKRYMANRHFKVLTHED---VLNEYLK 331
Query: 695 -VLPLKRAAEEKAQAIRA-------AAASSFKSMLREK-GDITLSSRWSKVKDILRDDPR 745
V ++ + K +R A +FKS+LRE I ++RWS + ++ DPR
Sbjct: 332 IVNTIENDLQNKLNELRLRNYTRDRIARDNFKSLLREVPIKIKANTRWSDIYPHIKSDPR 391
Query: 746 Y 746
+
Sbjct: 392 F 392
>sp|Q5F457|WBP4_CHICK WW domain-binding protein 4 OS=Gallus gallus GN=WBP4 PE=2 SV=1
Length = 398
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 11/78 (14%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W + G YYYN TGES +EKP GF+G S TG+ W + D
Sbjct: 140 WVQGLSPEGYTYYYNTKTGESQWEKPKGFQGN-----------SKTSHTGSVWVEGVSED 188
Query: 419 GKKYYYNSKMKVSSWQIP 436
G YYYN++ VS+W+ P
Sbjct: 189 GHTYYYNTQTGVSTWEKP 206
>sp|O75554|WBP4_HUMAN WW domain-binding protein 4 OS=Homo sapiens GN=WBP4 PE=1 SV=1
Length = 376
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 11/81 (13%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W T G YYY+ ++G S +EKP GF+G+ K V+ T W + D
Sbjct: 128 WVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVK-----------TVWVEGLSED 176
Query: 419 GKKYYYNSKMKVSSWQIPSEV 439
G YYYN++ S W+ P +
Sbjct: 177 GFTYYYNTETGESRWEKPDDF 197
Score = 35.8 bits (81), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 358 AWTAHKTDTGIVYYYNAVTGESTYEKPAGF 387
W ++ G YYYN TGES +EKP F
Sbjct: 168 VWVEGLSEDGFTYYYNTETGESRWEKPDDF 197
>sp|Q61048|WBP4_MOUSE WW domain-binding protein 4 OS=Mus musculus GN=Wbp4 PE=1 SV=4
Length = 376
Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 11/82 (13%)
Query: 358 AWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTN 417
W T G YYY+ +TG S +EKP GF+G K + W +
Sbjct: 128 GWVEGVTADGHCYYYDLITGASQWEKPEGFQGNLKKTAAKAV-----------WVEGLSE 176
Query: 418 DGKKYYYNSKMKVSSWQIPSEV 439
DG YYYN++ S W+ P +
Sbjct: 177 DGYTYYYNTETGESKWEKPEDF 198
>sp|Q5HZF2|WBP4_RAT WW domain-binding protein 4 OS=Rattus norvegicus GN=Wbp4 PE=2 SV=1
Length = 374
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 359 WTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTND 418
W T G YYY+ VTG S +EKP GF+G K + W + D
Sbjct: 127 WVEGVTADGHCYYYDLVTGASQWEKPEGFQGNLKKTAAKAI-----------WVEGLSED 175
Query: 419 GKKYYYNSKMKVSSWQIPSEV 439
G YYYN++ S W+ P +
Sbjct: 176 GYTYYYNTETGESKWEKPDDF 196
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/153 (28%), Positives = 79/153 (51%), Gaps = 16/153 (10%)
Query: 680 EALDRKDRELLLNERVLPLKRAAEEKAQAI-RAAAASSFKSMLREKGDITLSSRWSKVKD 738
E L R+++E L E+ L++ E K Q R + K +E R K ++
Sbjct: 2751 EELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQE--------RLQKEEE 2802
Query: 739 ILRDDPRYKSVRHEDREVIFNEYVRELKAAEEEA-EREAKARREEQEKLKEREREMRKRK 797
+ R + + + E +E + E ELK E+E ++E +R+EQE+L ++E E+ KR+
Sbjct: 2803 LKRQEQ--ERLEREKQEQLQKE--EELKRQEQERLQKEEALKRQEQERL-QKEEEL-KRQ 2856
Query: 798 EREEQEMERVRLKVRRKEAVTSFQALLVETIKD 830
E+E E +++ L R + + ++ +V+ IKD
Sbjct: 2857 EQERLERKKIELAEREQHIKSKLESDMVKIIKD 2889
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 49/207 (23%), Positives = 95/207 (45%), Gaps = 40/207 (19%)
Query: 764 ELKAAEEEA-EREAKARREEQEKLKE-----REREMRKRKEREEQEMERVRLKVRRKEAV 817
ELK E+E ++E +R+EQE+L++ R+ + R +E++EQ + LK + +E +
Sbjct: 2774 ELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERL 2833
Query: 818 TSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAH 877
+AL K + + +L++ Q R ++ ++RE +HIK+ E
Sbjct: 2834 QKEEAL-----KRQEQERLQKEEELKRQEQERLERKKIELAERE----QHIKSKLES--- 2881
Query: 878 DFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEE 937
D ++ + +T E E K + K+ R E W +H +
Sbjct: 2882 DMVKIIKDELTKE--KDEIIKNKDI------------------KL-RHSLEQKWLKHLQN 2920
Query: 938 I-QRKHKSSLDQNEDNHKDSKSRSSTD 963
I K S L++N++ KD++++ T+
Sbjct: 2921 ILSLKIDSLLNKNDEVIKDNETQLKTN 2947
Score = 37.7 bits (86), Expect = 0.43, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 83/186 (44%), Gaps = 36/186 (19%)
Query: 630 RAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDREL 689
R E+ER +K ++L + E ++ Q K+ E L R+++E
Sbjct: 2741 RQEQERLQKE----------EELKRQEQERLEREKQEQLQKE--------EELKRQEQER 2782
Query: 690 LLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSV 749
L E L KR +E+ Q + + REK ++ L+ + K
Sbjct: 2783 LQKEEAL--KRQEQERLQKEEELKRQEQERLEREK------------QEQLQKEEELK-- 2826
Query: 750 RHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRL 809
R E + E ++ + +E ++E + +R+EQE+L+ ++ E+ +R++ + ++E +
Sbjct: 2827 RQEQERLQKEEALK--RQEQERLQKEEELKRQEQERLERKKIELAEREQHIKSKLESDMV 2884
Query: 810 KVRRKE 815
K+ + E
Sbjct: 2885 KIIKDE 2890
>sp|A8WM57|EIF3A_CAEBR Eukaryotic translation initiation factor 3 subunit A
OS=Caenorhabditis briggsae GN=egl-45 PE=3 SV=1
Length = 1098
Score = 34.7 bits (78), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 68/123 (55%), Gaps = 15/123 (12%)
Query: 771 EAEREAKARREEQEKLKEREREM-RKRKEREEQEMER--VRLKVRRKEAVTSFQALL--- 824
+A+RE AR EE ++L E+ +E RKRK+ E++E+++ R ++ + + +QA++
Sbjct: 608 QAKREEAARAEEMKRLDEQNKESERKRKQAEQEEIQKKIKRDQLHKMQQNVIYQAIIKEK 667
Query: 825 -VETIK--DPQASWTESRPKLEKDPQGRA-TNADLDSSDREKLFREHIKTLYERCAHDFR 880
+E + DP+ E R +L+K+ RA T L EK F HI+ L+ ++ R
Sbjct: 668 GLEQFRDMDPEQVLREQRERLDKE---RAETQRRLQQQ--EKKFDHHIRALHLEEMNERR 722
Query: 881 GLL 883
++
Sbjct: 723 AVM 725
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3
Length = 4684
Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 767 AAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQA 822
AAEEEA R+ KA EE E+LK + E R+ +ER EQE R +L++ ++ A QA
Sbjct: 2132 AAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESAR-QLQLAQEAAQKRLQA 2186
>sp|Q9JI55|PLEC_CRIGR Plectin (Fragment) OS=Cricetulus griseus GN=PLEC PE=1 SV=1
Length = 4473
Score = 34.3 bits (77), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 767 AAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQA 822
AAEEEA R+ KA EE E+LK + E R+ +ER EQE R +L++ ++ A QA
Sbjct: 1921 AAEEEAARQRKAALEEVERLKAKVEEARRLRERAEQESAR-QLQLAQEAAQKRLQA 1975
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.124 0.349
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 378,852,567
Number of Sequences: 539616
Number of extensions: 17441077
Number of successful extensions: 134813
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 3216
Number of HSP's that attempted gapping in prelim test: 91773
Number of HSP's gapped (non-prelim): 22076
length of query: 978
length of database: 191,569,459
effective HSP length: 127
effective length of query: 851
effective length of database: 123,038,227
effective search space: 104705531177
effective search space used: 104705531177
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 66 (30.0 bits)