Query 002026
Match_columns 978
No_of_seqs 319 out of 1065
Neff 5.6
Searched_HMMs 46136
Date Thu Mar 28 14:50:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0155 Transcription factor C 100.0 5E-81 1.1E-85 692.5 45.9 595 258-947 1-600 (617)
2 COG5104 PRP40 Splicing factor 100.0 2.8E-48 6.2E-53 424.1 26.4 463 351-937 9-484 (590)
3 KOG0155 Transcription factor C 100.0 8.4E-35 1.8E-39 324.6 23.4 260 642-955 241-550 (617)
4 KOG0152 Spliceosomal protein F 100.0 5.5E-29 1.2E-33 286.6 18.0 335 571-944 21-360 (463)
5 COG5104 PRP40 Splicing factor 99.9 1.6E-24 3.4E-29 238.5 25.1 255 642-943 145-425 (590)
6 KOG0152 Spliceosomal protein F 99.7 4.1E-16 8.8E-21 180.6 14.8 314 573-945 90-432 (463)
7 KOG4271 Rho-GTPase activating 99.4 8.2E-13 1.8E-17 157.4 14.0 277 642-945 51-337 (1100)
8 PF01846 FF: FF domain; Inter 99.1 1.5E-10 3.2E-15 95.6 5.4 50 577-626 1-51 (51)
9 smart00441 FF Contains two con 99.0 3.2E-10 6.9E-15 94.9 4.7 52 577-628 2-54 (55)
10 PF01846 FF: FF domain; Inter 98.7 2.9E-08 6.3E-13 82.0 5.2 49 712-761 1-51 (51)
11 PF00397 WW: WW domain; Inter 98.6 1.7E-08 3.6E-13 75.4 2.8 30 355-384 1-31 (31)
12 smart00441 FF Contains two con 98.6 4.5E-08 9.8E-13 81.9 5.3 52 712-763 2-54 (55)
13 KOG4271 Rho-GTPase activating 98.6 4.8E-07 1E-11 109.3 14.5 180 578-767 54-265 (1100)
14 smart00456 WW Domain with 2 co 98.4 2.6E-07 5.7E-12 69.0 4.0 31 355-385 1-31 (32)
15 PF00397 WW: WW domain; Inter 98.4 2.9E-07 6.2E-12 68.8 3.9 28 409-436 3-31 (31)
16 KOG1924 RhoA GTPase effector D 98.3 1.9E-06 4E-11 102.6 10.9 49 580-631 815-871 (1102)
17 cd00201 WW Two conserved trypt 98.3 5.2E-07 1.1E-11 66.7 3.9 30 356-385 1-30 (31)
18 KOG1924 RhoA GTPase effector D 98.2 6.9E-06 1.5E-10 97.9 11.0 6 648-653 816-821 (1102)
19 smart00456 WW Domain with 2 co 98.2 1.9E-06 4.1E-11 64.4 3.8 29 409-437 3-31 (32)
20 cd00201 WW Two conserved trypt 98.0 5.1E-06 1.1E-10 61.3 3.6 29 409-437 2-30 (31)
21 KOG3259 Peptidyl-prolyl cis-tr 97.4 8.8E-05 1.9E-09 73.4 2.2 36 353-388 5-41 (163)
22 KOG1891 Proline binding protei 97.3 0.0002 4.2E-09 75.3 4.1 68 354-438 93-160 (271)
23 KOG0307 Vesicle coat complex C 97.0 0.032 6.9E-07 70.3 19.5 22 45-66 697-718 (1049)
24 PHA03247 large tegument protei 97.0 0.37 8E-06 65.7 29.0 11 114-124 2522-2532(3151)
25 KOG2893 Zn finger protein [Gen 96.9 0.0098 2.1E-07 63.4 12.0 54 232-289 153-206 (341)
26 KOG3259 Peptidyl-prolyl cis-tr 96.9 0.00043 9.3E-09 68.7 1.5 32 406-438 7-39 (163)
27 KOG1830 Wiskott Aldrich syndro 96.4 0.26 5.6E-06 56.8 19.8 7 47-53 215-221 (518)
28 PHA03247 large tegument protei 96.3 0.41 9E-06 65.2 23.0 13 271-283 2870-2882(3151)
29 KOG3671 Actin regulatory prote 96.3 0.12 2.6E-06 60.5 16.2 14 111-124 277-290 (569)
30 KOG1984 Vesicle coat complex C 96.2 0.35 7.5E-06 60.2 20.1 11 416-426 355-365 (1007)
31 KOG4849 mRNA cleavage factor I 96.0 0.087 1.9E-06 59.1 12.7 33 255-289 280-312 (498)
32 KOG1984 Vesicle coat complex C 95.9 0.82 1.8E-05 57.1 21.9 22 410-432 364-385 (1007)
33 KOG0132 RNA polymerase II C-te 95.8 0.22 4.7E-06 61.1 16.1 30 196-225 605-634 (894)
34 KOG0119 Splicing factor 1/bran 95.7 0.6 1.3E-05 54.9 18.5 10 171-180 384-393 (554)
35 KOG0119 Splicing factor 1/bran 95.6 1.1 2.3E-05 53.0 20.1 9 7-15 315-323 (554)
36 KOG0307 Vesicle coat complex C 95.5 1.3 2.7E-05 56.7 21.7 20 249-268 858-877 (1049)
37 KOG3671 Actin regulatory prote 95.4 2.1 4.5E-05 50.7 21.5 13 280-292 434-446 (569)
38 KOG1830 Wiskott Aldrich syndro 95.4 1.7 3.6E-05 50.4 20.2 8 235-242 371-378 (518)
39 KOG0132 RNA polymerase II C-te 95.3 0.56 1.2E-05 57.7 17.2 7 94-100 493-499 (894)
40 KOG2893 Zn finger protein [Gen 95.2 0.24 5.3E-06 53.1 12.3 9 572-580 321-329 (341)
41 KOG4849 mRNA cleavage factor I 95.2 0.49 1.1E-05 53.3 14.9 21 267-288 311-331 (498)
42 KOG0940 Ubiquitin protein liga 93.7 0.091 2E-06 60.5 5.6 84 353-439 59-146 (358)
43 KOG2375 Protein interacting wi 93.1 13 0.00029 46.6 22.6 13 20-32 424-436 (756)
44 PF03154 Atrophin-1: Atrophin- 91.9 29 0.00063 44.6 23.7 30 577-616 549-578 (982)
45 KOG0391 SNF2 family DNA-depend 91.2 17 0.00037 47.6 20.5 22 76-97 1688-1709(1958)
46 PHA03378 EBNA-3B; Provisional 90.4 16 0.00034 45.1 18.5 57 249-305 802-880 (991)
47 KOG1923 Rac1 GTPase effector F 89.8 0.9 2E-05 56.0 8.0 27 128-154 270-296 (830)
48 KOG0150 Spliceosomal protein F 89.7 0.38 8.2E-06 53.6 4.4 38 352-389 146-183 (336)
49 KOG3209 WW domain-containing p 89.1 1.1 2.5E-05 54.6 8.1 87 350-437 128-253 (984)
50 KOG0702 Predicted GTPase-activ 86.8 80 0.0017 38.0 22.4 114 57-180 239-354 (524)
51 KOG1985 Vesicle coat complex C 86.4 8.3 0.00018 48.5 13.2 18 413-430 336-353 (887)
52 KOG4592 Uncharacterized conser 85.6 11 0.00024 46.0 13.3 52 170-224 163-215 (728)
53 KOG1985 Vesicle coat complex C 84.2 14 0.0003 46.6 13.7 15 574-588 378-392 (887)
54 KOG1029 Endocytic adaptor prot 82.4 1.2E+02 0.0026 38.5 20.2 13 409-421 233-246 (1118)
55 KOG0150 Spliceosomal protein F 81.3 0.73 1.6E-05 51.4 1.4 53 377-440 130-182 (336)
56 KOG4672 Uncharacterized conser 79.8 57 0.0012 38.3 15.6 40 86-133 128-167 (487)
57 PF07271 Cytadhesin_P30: Cytad 79.8 21 0.00046 39.6 11.8 8 264-271 265-272 (279)
58 KOG3209 WW domain-containing p 78.6 3.4 7.4E-05 50.8 5.9 82 349-438 217-300 (984)
59 KOG1029 Endocytic adaptor prot 76.8 1.1E+02 0.0025 38.7 17.7 9 833-841 411-419 (1118)
60 KOG4672 Uncharacterized conser 75.6 14 0.0003 43.1 9.2 27 130-158 296-322 (487)
61 KOG2932 E3 ubiquitin ligase in 75.2 1.5E+02 0.0033 33.9 16.7 16 231-246 283-298 (389)
62 KOG0608 Warts/lats-like serine 73.4 49 0.0011 41.2 13.4 24 62-85 148-171 (1034)
63 KOG1923 Rac1 GTPase effector F 73.0 11 0.00025 46.9 8.3 37 830-872 691-727 (830)
64 KOG1960 Predicted RNA-binding 72.8 39 0.00085 39.5 11.9 29 260-288 443-471 (531)
65 PF07271 Cytadhesin_P30: Cytad 71.8 90 0.0019 34.9 13.9 10 138-147 135-144 (279)
66 KOG0144 RNA-binding protein CU 71.0 4.3 9.3E-05 47.4 4.0 36 352-387 448-483 (510)
67 KOG0391 SNF2 family DNA-depend 70.5 78 0.0017 42.0 14.7 9 211-219 1840-1848(1958)
68 KOG3161 Predicted E3 ubiquitin 69.8 58 0.0012 40.3 12.9 79 186-275 407-492 (861)
69 KOG2129 Uncharacterized conser 69.1 1.1E+02 0.0025 36.0 14.5 37 709-747 184-220 (552)
70 KOG2072 Translation initiation 69.0 3.3E+02 0.0072 35.1 19.3 41 611-653 660-700 (988)
71 KOG2932 E3 ubiquitin ligase in 68.9 2.2E+02 0.0047 32.7 16.3 7 117-123 162-168 (389)
72 KOG1450 Predicted Rho GTPase-a 67.4 8.1 0.00018 47.7 5.5 85 354-438 268-357 (650)
73 PTZ00436 60S ribosomal protein 67.3 57 0.0012 36.9 11.4 41 720-768 108-148 (357)
74 KOG3753 Circadian clock protei 66.2 65 0.0014 41.2 12.6 16 114-129 748-763 (1114)
75 KOG4307 RNA binding protein RB 65.2 79 0.0017 39.5 12.8 21 116-136 167-187 (944)
76 KOG1891 Proline binding protei 63.0 3.8 8.1E-05 44.1 1.4 34 353-386 127-160 (271)
77 KOG2072 Translation initiation 62.8 4.5E+02 0.0097 34.0 21.1 10 618-627 568-577 (988)
78 PF12905 Glyco_hydro_101: Endo 61.8 3 6.6E-05 48.7 0.5 33 410-442 369-406 (425)
79 KOG2236 Uncharacterized conser 60.7 22 0.00047 42.3 7.0 20 226-245 407-427 (483)
80 KOG0260 RNA polymerase II, lar 60.5 2.6E+02 0.0056 37.4 16.5 13 234-246 1571-1583(1605)
81 KOG0608 Warts/lats-like serine 56.2 2.4E+02 0.0052 35.7 14.7 39 140-180 135-173 (1034)
82 KOG3546 Collagens (type XV) [E 55.9 39 0.00085 41.5 8.2 11 118-128 714-724 (1167)
83 PF06346 Drf_FH1: Formin Homol 55.3 1.5E+02 0.0032 30.3 10.7 8 283-290 139-146 (160)
84 PTZ00266 NIMA-related protein 54.6 78 0.0017 41.8 11.3 12 359-370 30-41 (1021)
85 KOG3771 Amphiphysin [Intracell 53.9 2.1E+02 0.0046 34.4 13.6 39 685-723 26-66 (460)
86 KOG4594 Sequence-specific sing 53.4 3.4E+02 0.0074 30.8 14.2 11 175-185 112-122 (354)
87 KOG0905 Phosphoinositide 3-kin 53.2 73 0.0016 42.1 10.2 14 255-268 167-180 (1639)
88 KOG2236 Uncharacterized conser 52.3 51 0.0011 39.3 8.2 14 105-118 370-383 (483)
89 KOG1920 IkappaB kinase complex 49.9 3.6E+02 0.0079 36.1 15.6 149 597-767 911-1079(1265)
90 KOG3091 Nuclear pore complex, 48.7 5.1E+02 0.011 31.6 15.6 16 815-831 415-430 (508)
91 KOG0566 Inositol-1,4,5-triphos 47.2 7.9E+02 0.017 32.5 17.6 62 22-91 853-917 (1080)
92 PRK00247 putative inner membra 47.0 3.3E+02 0.0071 32.8 13.9 18 577-594 86-103 (429)
93 KOG4307 RNA binding protein RB 45.1 2.4E+02 0.0052 35.6 12.4 34 89-124 92-128 (944)
94 KOG4364 Chromatin assembly fac 44.7 5E+02 0.011 32.8 14.9 10 686-695 247-256 (811)
95 PHA03378 EBNA-3B; Provisional 43.5 5E+02 0.011 32.9 14.6 7 113-119 650-656 (991)
96 KOG4334 Uncharacterized conser 43.5 20 0.00043 42.8 3.2 35 405-440 154-188 (650)
97 PF12297 EVC2_like: Ellis van 43.4 3.8E+02 0.0083 32.1 13.4 149 755-919 197-354 (429)
98 PRK11138 outer membrane biogen 43.1 30 0.00065 40.1 4.7 65 362-438 125-189 (394)
99 KOG4302 Microtubule-associated 42.3 8.3E+02 0.018 31.1 25.6 80 686-767 160-240 (660)
100 PF15449 Retinal: Retinal prot 42.1 3.4E+02 0.0073 36.0 13.5 16 141-156 997-1012(1287)
101 PF15402 Spc7_N: N-terminus of 41.3 9.9E+02 0.021 31.7 19.8 52 24-80 482-533 (927)
102 PRK14472 F0F1 ATP synthase sub 40.9 4.3E+02 0.0094 27.4 14.6 18 856-873 155-172 (175)
103 PRK14959 DNA polymerase III su 40.8 1.9E+02 0.004 36.5 11.1 9 355-363 492-500 (624)
104 PF07960 CBP4: CBP4; InterPro 40.5 3.2E+02 0.0069 27.6 10.5 48 620-683 34-81 (128)
105 KOG3878 Protein involved in ma 40.1 1.6E+02 0.0035 33.9 9.3 14 711-724 104-117 (469)
106 KOG1451 Oligophrenin-1 and rel 39.6 8.6E+02 0.019 30.5 15.6 33 692-724 33-67 (812)
107 PF06102 DUF947: Domain of unk 39.1 2.7E+02 0.0058 29.1 10.4 33 738-770 30-65 (168)
108 TIGR03300 assembly_YfgL outer 38.7 47 0.001 38.0 5.4 61 364-436 72-132 (377)
109 TIGR03300 assembly_YfgL outer 37.8 40 0.00087 38.5 4.6 64 362-437 110-173 (377)
110 KOG0917 Uncharacterized conser 36.5 5.1E+02 0.011 29.4 12.3 17 249-265 210-226 (338)
111 KOG4334 Uncharacterized conser 36.3 27 0.00058 41.7 2.8 41 350-390 150-190 (650)
112 KOG4364 Chromatin assembly fac 35.9 1.9E+02 0.0041 36.2 9.7 11 964-974 464-474 (811)
113 KOG4462 WASP-interacting prote 35.7 7.9E+02 0.017 28.9 23.3 12 17-28 53-64 (437)
114 PF13360 PQQ_2: PQQ-like domai 35.0 34 0.00075 35.8 3.3 60 364-435 43-102 (238)
115 PF07946 DUF1682: Protein of u 34.9 1.1E+02 0.0024 35.1 7.5 11 754-764 264-274 (321)
116 PF13908 Shisa: Wnt and FGF in 34.0 1.1E+02 0.0024 31.8 6.8 10 253-262 146-155 (179)
117 KOG2199 Signal transducing ada 33.5 1.4E+02 0.0031 35.2 7.9 14 181-194 369-382 (462)
118 PF03999 MAP65_ASE1: Microtubu 33.2 30 0.00064 43.2 2.7 19 685-703 141-159 (619)
119 KOG1144 Translation initiation 33.1 2.3E+02 0.0051 36.2 10.0 11 817-827 294-304 (1064)
120 PF12128 DUF3584: Protein of u 32.8 1.4E+03 0.031 31.1 19.1 55 832-889 1042-1098(1201)
121 COG1283 NptA Na+/phosphate sym 32.8 2.5E+02 0.0054 34.7 10.2 30 738-767 428-457 (533)
122 PF03276 Gag_spuma: Spumavirus 32.4 2E+02 0.0043 35.3 9.1 13 314-326 292-304 (582)
123 KOG3514 Neurexin III-alpha [Si 31.4 3.6E+02 0.0077 35.8 11.3 44 151-194 1387-1432(1591)
124 cd07664 BAR_SNX2 The Bin/Amphi 31.0 7.5E+02 0.016 27.2 16.1 24 868-891 193-216 (234)
125 KOG4661 Hsp27-ERE-TATA-binding 30.4 2.1E+02 0.0046 35.1 8.8 7 620-626 423-429 (940)
126 KOG1318 Helix loop helix trans 30.3 3E+02 0.0065 32.9 10.0 40 712-769 250-289 (411)
127 PLN03086 PRLI-interacting fact 30.3 2.4E+02 0.0053 35.0 9.6 37 830-868 73-109 (567)
128 PRK04863 mukB cell division pr 29.9 1.8E+03 0.038 31.1 27.9 23 900-922 489-511 (1486)
129 PF12777 MT: Microtubule-bindi 29.3 2.6E+02 0.0057 32.3 9.4 16 830-845 291-306 (344)
130 KOG2391 Vacuolar sorting prote 28.2 1.4E+02 0.0031 34.5 6.7 21 88-108 53-73 (365)
131 KOG2891 Surface glycoprotein [ 27.9 9.3E+02 0.02 27.3 14.8 30 859-888 400-429 (445)
132 KOG4264 Nucleo-cytoplasmic pro 27.7 6.4E+02 0.014 31.0 11.9 143 160-341 541-687 (694)
133 COG5180 PBP1 Protein interacti 27.5 2.9E+02 0.0063 33.3 9.1 8 216-223 535-542 (654)
134 KOG1676 K-homology type RNA bi 27.1 3.8E+02 0.0082 33.3 10.3 12 100-111 319-330 (600)
135 PRK09173 F0F1 ATP synthase sub 26.6 6.9E+02 0.015 25.4 15.1 20 855-874 138-157 (159)
136 KOG3837 Uncharacterized conser 26.5 2.4E+02 0.0053 33.6 8.2 20 161-180 50-69 (523)
137 PLN02316 synthase/transferase 26.3 2.4E+02 0.0052 37.6 9.1 18 749-766 237-254 (1036)
138 KOG2047 mRNA splicing factor [ 26.2 1.3E+03 0.028 29.5 14.4 74 665-744 70-152 (835)
139 PRK11138 outer membrane biogen 26.1 95 0.0021 36.0 5.2 60 364-437 263-322 (394)
140 KOG3753 Circadian clock protei 26.0 3.4E+02 0.0073 35.3 9.8 19 597-616 1023-1041(1114)
141 smart00564 PQQ beta-propeller 26.0 68 0.0015 23.3 2.6 22 414-435 11-32 (33)
142 KOG0162 Myosin class I heavy c 25.7 7.6E+02 0.016 31.8 12.4 11 353-363 1080-1090(1106)
143 KOG3190 Uncharacterized conser 25.4 6.3E+02 0.014 28.1 10.5 34 740-773 111-147 (256)
144 PRK00409 recombination and DNA 25.2 4.9E+02 0.011 33.7 11.5 16 428-443 218-233 (782)
145 KOG3895 Synaptic vesicle prote 24.9 3.6E+02 0.0077 31.6 9.0 90 139-236 394-487 (488)
146 PRK07352 F0F1 ATP synthase sub 24.7 7.9E+02 0.017 25.4 14.9 17 855-871 155-171 (174)
147 PF09325 Vps5: Vps5 C terminal 24.5 8.7E+02 0.019 25.8 16.5 24 868-891 197-220 (236)
148 KOG2689 Predicted ubiquitin re 24.0 1.1E+03 0.024 26.8 12.3 12 805-816 160-171 (290)
149 PRK14475 F0F1 ATP synthase sub 23.7 8.1E+02 0.018 25.2 15.4 20 855-874 146-165 (167)
150 KOG0940 Ubiquitin protein liga 23.6 79 0.0017 37.0 3.8 30 358-387 117-146 (358)
151 KOG3915 Transcription regulato 23.5 7.2E+02 0.016 30.2 11.2 30 145-174 15-44 (641)
152 KOG1546 Metacaspase involved i 22.8 1.2E+02 0.0025 35.1 4.7 11 215-225 9-19 (362)
153 KOG2070 Guanine nucleotide exc 22.6 2E+02 0.0044 34.8 6.8 38 108-145 385-422 (661)
154 PF03276 Gag_spuma: Spumavirus 22.6 4.2E+02 0.009 32.7 9.4 9 17-25 18-26 (582)
155 PRK06231 F0F1 ATP synthase sub 22.5 9.8E+02 0.021 25.7 14.7 17 855-871 184-200 (205)
156 PF07960 CBP4: CBP4; InterPro 22.5 8.2E+02 0.018 24.8 10.7 36 688-724 34-69 (128)
157 KOG3859 Septins (P-loop GTPase 22.3 1.2E+03 0.027 26.8 12.3 13 759-771 329-341 (406)
158 COG0233 Frr Ribosome recycling 22.3 4.7E+02 0.01 28.1 8.7 48 706-769 130-177 (187)
159 KOG1150 Predicted molecular ch 22.2 1E+03 0.023 25.9 13.1 159 570-739 62-226 (250)
160 KOG4304 Transcriptional repres 22.1 2.2E+02 0.0048 31.8 6.7 69 861-947 28-97 (250)
161 KOG2047 mRNA splicing factor [ 21.8 9.1E+02 0.02 30.8 12.0 134 596-746 70-226 (835)
162 KOG1920 IkappaB kinase complex 21.8 2.2E+03 0.047 29.4 17.9 39 730-768 908-952 (1265)
163 KOG4286 Dystrophin-like protei 21.8 36 0.00079 42.6 0.6 32 354-385 349-380 (966)
164 COG0233 Frr Ribosome recycling 21.4 5.3E+02 0.012 27.7 8.9 27 857-883 159-185 (187)
165 KOG3454 U1 snRNP-specific prot 21.4 6.9E+02 0.015 26.3 9.5 11 117-127 45-55 (165)
166 KOG3537 Adaptor protein NUMB [ 21.3 3.2E+02 0.007 32.8 7.9 14 255-268 493-506 (543)
167 COG1520 FOG: WD40-like repeat 21.1 1.1E+02 0.0023 35.3 4.3 62 364-435 118-179 (370)
168 TIGR01069 mutS2 MutS2 family p 21.1 6.6E+02 0.014 32.5 11.5 24 675-698 408-431 (771)
169 KOG1049 Polyadenylation factor 20.9 1.7E+03 0.036 27.7 14.6 19 63-81 228-246 (538)
170 KOG2677 Stoned B synaptic vesi 20.8 1.2E+03 0.026 29.5 12.7 65 178-245 250-314 (922)
171 KOG0162 Myosin class I heavy c 20.8 8.9E+02 0.019 31.2 11.7 6 299-304 1083-1088(1106)
172 KOG4462 WASP-interacting prote 20.7 1.4E+03 0.031 26.9 12.7 28 117-144 88-117 (437)
173 KOG3598 Thyroid hormone recept 20.6 4.6E+02 0.01 36.0 9.7 22 101-122 1867-1889(2220)
174 PF11172 DUF2959: Protein of u 20.3 1.1E+03 0.024 25.5 14.3 17 812-828 120-136 (201)
No 1
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=5e-81 Score=692.54 Aligned_cols=595 Identities=31% Similarity=0.473 Sum_probs=472.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCccCCCCCCccccCCCCCCCCCCCCCCc
Q 002026 258 PPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAATSHSAIPGHQLVGTSGNTEAPPSGTDK 337 (978)
Q Consensus 258 pp~~~~~~~~p~~~y~~~~~g~~~~p~~g~~~~~~~~p~~~ppg~~~~g~~~~~~~~~~~g~q~~~t~g~~~~~~~~~~~ 337 (978)
+|.|++.+++| +.++.|++|.|+|..+.+. +.....+.|.|+.+.+..+++.+ -++. .||-
T Consensus 1 ~p~~~~~~~ap--s~wtef~ap~G~pyy~ns~-t~~st~ekP~~l~~~~s~~~~~~--~p~~----sp~~---------- 61 (617)
T KOG0155|consen 1 MPHGQIPMSAP--SGWTEFKAPDGIPYYWNSE-TLESTWEKPSFLEKNESSGVTAS--EPSL----SPAI---------- 61 (617)
T ss_pred CCCCCCCCCCC--CCCccCCCCCCcceecccc-cccchhhCchhhhhccccCcccc--CCcc----Ccch----------
Confidence 46777788888 8899999999999999883 43366667888888776665321 0111 2221
Q ss_pred ccccccccccccccccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcC
Q 002026 338 KEHVHDVSSRIGASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTN 417 (978)
Q Consensus 338 ~~~~~~~~~~~~~a~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~ 417 (978)
+. .+...|+.+..+.|-.||||..+ +.+.|....+...+.+.+|.+. .+++|++||.|||+
T Consensus 62 -------------~~-~~~~t~~~~~~e~~~~k~~~s~~---~~ee~~~~~~~~kk~p~rPi~~--~~ipgtdWcVVwTg 122 (617)
T KOG0155|consen 62 -------------AE-AQQKTSSNAFGENPSEKLFVSEN---AAEERKNSRAARKKLPDRPIFK--KPIPGTDWCVVWTG 122 (617)
T ss_pred -------------hh-hhhhhhhccCCcchHHHHHhCcc---hhhcCCCcccccccCCCCCCCC--CCCCCCCeEEEEeC
Confidence 00 12456999999999999999988 8999998888777766666554 35899999999999
Q ss_pred CCceEEEeCCCCeeeccCChhHHHhhhhcchhhhhhcCCCCcchhhcccCCcccCCCCCccCCCCCccccccCCCCCCch
Q 002026 418 DGKKYYYNSKMKVSSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSS 497 (978)
Q Consensus 418 dGr~YyyN~~T~~S~We~P~el~~l~~k~e~~~~ke~s~p~~~v~~e~~~~~~~~~apa~~~~g~~~~~~k~~~~~~~~s 497 (978)
|||+||||+.|+.|+|++|.++.+. .+.+.+- +.|... .++.++....+.+|+.+.++.+..... +.
T Consensus 123 D~RvFFyNpktk~S~We~P~dlk~r---~dvdkii--s~Ppsk-k~eees~kt~~eap~~s~~~~~~aed~-------~~ 189 (617)
T KOG0155|consen 123 DNRVFFYNPKTKLSVWERPLDLKGR---LDVDKII--SKPPSK-KQEEESKKTNHEAPHESRHLQTEAEDP-------SG 189 (617)
T ss_pred CCceEEeCCccccccccCchhhccc---ccHHHHh--cCCcch-hhhhhcccccCCCcchhccccchhccC-------cc
Confidence 9999999999999999999998753 2332221 223221 233444445566776665555432211 11
Q ss_pred hHHHHHhhhccCCCCCCCCCCCCcccccccC-CCCccchhhhcccccccchhhhcccCCCCCCCCCCCCCCCCCCCCCHH
Q 002026 498 ALDLIKKKLQDSGTPTASPAPVSSAAATSES-NGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKE 576 (978)
Q Consensus 498 a~d~~kkk~~~s~~p~~sp~~~~~~~~~~e~-~~s~~~~~t~~~~~~e~~~~K~kd~~~~~~~s~~ssdseeee~~~skE 576 (978)
..+....+...++.++.. ....+. ++. + ..+.....+.+.+.+++...+++|
T Consensus 190 ~~d~~~sEe~~E~~~vk~-------kk~ke~~~~~---------l-----------q~e~~~~~eas~da~~e~~~vplE 242 (617)
T KOG0155|consen 190 KEDVSYSEEFYEDSDVKE-------KKEKEHSAGE---------L-----------QPEQLAAEEASYDAAEERTNVPLE 242 (617)
T ss_pred hhhhhHHHhhhccCchhh-------hhhccccccC---------C-----------CccccchhhhccccccccccCCHH
Confidence 334443333344433221 000000 000 0 001112233456677788899999
Q ss_pred HHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002026 577 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEV 656 (978)
Q Consensus 577 Eak~aFkeLLkE~~V~~~stWekal~kI~~DPRY~aL~s~~ERKqlFeeYi~er~keEreEkr~k~k~Ake~F~~LLee~ 656 (978)
|+..+|++||+|+||.+|++||+++++|++||||.+|.+. +||+||++||+.++++++.+++.+.+.|+++|..||.++
T Consensus 243 er~kqFkEMLkERgVsafStWEkel~KivfDpR~~~l~s~-~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL~e~ 321 (617)
T KOG0155|consen 243 ERRKQFKEMLKERGVSAFSTWEKELPKIVFDPRYLLLNSG-ERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLLAEA 321 (617)
T ss_pred HHHHHHHHHHHhcCCcccchHHHhhhhccCCcceeccCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999987 999999999999999999999999999999999999997
Q ss_pred hcCCCCCccHHHHHHHhcCCchhccCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHH
Q 002026 657 SEDIDHSTDYQTFKKKWGSDPRFEALDR-KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSK 735 (978)
Q Consensus 657 ~~~I~~~T~W~e~~kk~~~DpRfkaLd~-~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~~It~~T~Wsd 735 (978)
.++..++|+.|..+|++|+||++++. +|||.||++||..|++.++++.+..+++++.+|.+||.+. .|+..+.|++
T Consensus 322 --~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~~kek~ks~fv~ll~e~-~l~~~S~ws~ 398 (617)
T KOG0155|consen 322 --ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRAKKEKLKSDFVKLLEEQ-ELTRKSKWSK 398 (617)
T ss_pred --cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhcccc-hhhhhhhhhH
Confidence 47888999999999999999999998 9999999999999999999999999999999999999998 4999999999
Q ss_pred HHHHhccCchhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 002026 736 VKDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRK 814 (978)
Q Consensus 736 vk~~L~~DpRy~aL~~-~dRe~lFeeyI~eLe~~e~e~ere~k~kreee~kLrERErevrkrKeReeke~eR~R~k~rr~ 814 (978)
++..|++++||++|+. ++|+.||.+||.+|..+...+..+.+++ ..+++|++|+|||++++.++.+|.+|+|+++++.
T Consensus 399 tk~~le~eery~aldsSs~re~lf~eyia~l~~~~~sd~e~er~~-r~ea~lrererev~k~~~~q~~e~~rerek~k~~ 477 (617)
T KOG0155|consen 399 TKDTLEDEERYIALDSSSTRESLFREYIANLGDETASDIEQEREK-RLEAQLREREREVEKELGNQLRERTREREKQKRG 477 (617)
T ss_pred HHHHhcccHHHhhhcccchHHHHHHHHHHHHHhhhcccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999986 8999999999999987654433333333 3456799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002026 815 EAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQ 894 (978)
Q Consensus 815 Ear~~F~aLL~E~v~~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~ek~r~dFr~LL~E~~~~~~~~~ 894 (978)
||.+.|++||+|+|++++.+|.|.+++|++|+|| +.++.|+..++++||+|||+.|+++|+++|+.||.++.
T Consensus 478 e~~~~y~all~d~irs~e~sw~e~rrilrkd~r~-as~~~le~~~keklf~dhiksl~~k~re~f~qllde~~------- 549 (617)
T KOG0155|consen 478 EAEDTYRALLIDLIRSTENSWHEARRILRKDERY-ASCDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEHE------- 549 (617)
T ss_pred HHHHHHHHHHHHHHhCcccchHHhHHHhhccccc-ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------
Confidence 9999999999999999999999999999999995 55678899999999999999999999999999999985
Q ss_pred hhccCCccccCHHHHHHhcCCCcccCCCChhHH--HHHHHHHHHHHHHhhhcccc
Q 002026 895 ETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKER--EALWRRHAEEIQRKHKSSLD 947 (978)
Q Consensus 895 ~~~d~~t~~~sW~e~kk~Lk~D~RY~~l~~~eR--e~lf~~~ie~l~~k~k~~~~ 947 (978)
.+|+.+.|.+++++|+++++|.++.+++| +.-|++|++..++..+..|+
T Consensus 550 ----~it~~~~w~e~kkii~e~~t~~k~~ss~rk~~r~f~d~~~~~~~~~~d~fr 600 (617)
T KOG0155|consen 550 ----KITPMMRWREAKKIIQEEETFVKIASSERKVERDFRDWQERRHDHLTDEFR 600 (617)
T ss_pred ----hcchHHHHHHhhHHHhhhHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHH
Confidence 36778889999999999998888876665 45566666666665555553
No 2
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=100.00 E-value=2.8e-48 Score=424.14 Aligned_cols=463 Identities=22% Similarity=0.328 Sum_probs=324.0
Q ss_pred cccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCe
Q 002026 351 SVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKV 430 (978)
Q Consensus 351 a~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~ 430 (978)
+.....+.|.|.+++|||+||||.+|+.|+||||.++....+. .+.-.+|+++.|.||++||||+.|++
T Consensus 9 ~s~~~~s~w~e~k~~dgRiYYYN~~T~kS~weKPkell~~~e~-----------~l~~~~Wke~~TadGkvyyyN~~TRE 77 (590)
T COG5104 9 ASGEARSEWEELKAPDGRIYYYNKRTGKSSWEKPKELLKGSEE-----------DLDVDPWKECRTADGKVYYYNSITRE 77 (590)
T ss_pred CcccHHHHHHHhhCCCCceEEEecccccccccChHHHhcchHh-----------hhchhhHHHHhhcCCceEEecCcccc
Confidence 3344556899999999999999999999999999888765543 34557899999999999999999999
Q ss_pred eeccCChhHHHhhhhcchhhhhhcCCCCcchhhcccCCcccCCCCCccCCCCCccccccCCCCCCchhHHHHHhhhccCC
Q 002026 431 SSWQIPSEVTELKKKEDDDTLKEQSVPNTNIVIEKGSNAISLSSPAVNTGGRDATALRTSSMPGSSSALDLIKKKLQDSG 510 (978)
Q Consensus 431 S~We~P~el~~l~~k~e~~~~ke~s~p~~~v~~e~~~~~~~~~apa~~~~g~~~~~~k~~~~~~~~sa~d~~kkk~~~s~ 510 (978)
|+|.+|.+.+.... .+. +.+ ++.. .+...|.+.. .++........+. -.
T Consensus 78 s~W~iP~e~KkVe~-~~e---QK~----------------~~~S-~i~~ngn~~a---it~~e~~eP~~~~-~~------ 126 (590)
T COG5104 78 SRWKIPPERKKVEP-IAE---QKH----------------DERS-MIGGNGNDMA---ITDHETSEPKYLL-GR------ 126 (590)
T ss_pred ccccCChhhhccCc-HHh---hhh----------------HHHH-HhccCCCccc---ccccccccchhHH-HH------
Confidence 99999999764211 110 000 0000 0000011100 0000000000000 00
Q ss_pred CCCCCCCCCCcccccccCCCCccchhhhcccccccchhhhcccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 002026 511 TPTASPAPVSSAAATSESNGSKAVEVTVKGLQNENTKDKLKDINGDGTMSDSSSDSEDGETGPTKEECIIKFKEMLKERG 590 (978)
Q Consensus 511 ~p~~sp~~~~~~~~~~e~~~s~~~~~t~~~~~~e~~~~K~kd~~~~~~~s~~ssdseeee~~~skEEak~aFkeLLkE~~ 590 (978)
+....++.+ +.. .--..++|+|+++|..||++++
T Consensus 127 ------------~~sQy~~~s-----t~~-----------------------------~v~r~T~E~AEk~F~~~L~e~q 160 (590)
T COG5104 127 ------------LMSQYGITS-----TKD-----------------------------AVYRLTKEEAEKEFITMLKENQ 160 (590)
T ss_pred ------------HHHhhcchh-----HHH-----------------------------HHHHHHHHHHHHHHHHHHhhcc
Confidence 000000000 000 0012489999999999999999
Q ss_pred CCCCCchHhhhcccccCchhhcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccHHHH
Q 002026 591 VAPFSKWEKELPKIVFDPRFKAIQS-QSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTF 669 (978)
Q Consensus 591 V~~~stWekal~kI~~DPRY~aL~s-~~ERKqlFeeYi~er~keEreEkr~k~k~Ake~F~~LLee~~~~I~~~T~W~e~ 669 (978)
|++.|+|++++..+ -||||+.|.+ ...||.+|++|+.++.+..+.+..++..+.+++|..||... ..|.++|.|.+|
T Consensus 161 Vdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~kml~~n-~~I~~yT~w~t~ 238 (590)
T COG5104 161 VDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCKMLAGN-SHIKYYTDWFTF 238 (590)
T ss_pred CCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHHHhcCC-CccceeehhhhH
Confidence 99999999999998 8999999864 57999999999999988888888888899999999999974 469999999999
Q ss_pred HHHhcCCchhccC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhccCchhhc
Q 002026 670 KKKWGSDPRFEAL-DRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKS 748 (978)
Q Consensus 670 ~kk~~~DpRfkaL-d~~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~a 748 (978)
+..|.++|.|+++ .+++.+++|.+|+..|-.-+++-.+.++..++.+|.++|+.++ ....++|.-..-.+..++||..
T Consensus 239 k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~~~k~~~~~al~~l~e~lr~l~-~E~f~~w~l~~~~fd~~~ry~~ 317 (590)
T COG5104 239 KSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKYVGKHMGGTALGRLEEVLRSLG-SETFIIWLLNHYVFDSVVRYLK 317 (590)
T ss_pred HhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHHHHHhhcccchHHHHHHHHhcC-cccchhhhhhhhhhcccHHHHh
Confidence 9999999999974 6799999999999999888888888888899999999999984 5678999977778899999976
Q ss_pred C------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 002026 749 V------RHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRLKVRRKEAVTSFQA 822 (978)
Q Consensus 749 L------~~~dRe~lFeeyI~eLe~~e~e~ere~k~kreee~kLrERErevrkrKeReeke~eR~R~k~rr~Ear~~F~a 822 (978)
+ +..|.+--|.+|++.|+++..-+.. +.++++ ..+.+.++++|++
T Consensus 318 n~~mk~l~~~d~L~~f~~~v~~lE~el~~~~~-----------------e~k~~~------------~~~~r~~rd~Frt 368 (590)
T COG5104 318 NKEMKPLDRKDILFSFIRYVRRLEKELLSAIE-----------------ERKAAA------------AQNARHHRDEFRT 368 (590)
T ss_pred hcccCcccHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHH------------HHHHHHhHHHHHH
Confidence 4 3455566677777777654321110 011111 1112246788999
Q ss_pred HHHHhhc----CCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 002026 823 LLVETIK----DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETED 898 (978)
Q Consensus 823 LL~E~v~----~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~ek~r~dFr~LL~E~~~~~~~~~~~~d 898 (978)
||.++.. +..++|++++++|++||||..+. +.+.+.+.+||.|+|-+|.......=+..+.++....++...+
T Consensus 369 LLr~l~~~~ki~~R~kwk~~yp~iKddprfLnlL-Gr~gsspldlf~D~ivDlenmy~~~r~~~~~~~~~~qis~~d~-- 445 (590)
T COG5104 369 LLRKLYSEGKIYYRMKWKNAYPLIKDDPRFLNLL-GRTGSSPLDLFFDFIVDLENMYGFARRSYERETRTGQISPTDR-- 445 (590)
T ss_pred HHHHhhhhhhhhhhhhhhhhcccccCCHHHHHHh-ccCCCChHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccc--
Confidence 9999843 56788999999999999998764 2345667899999999997766655455555544443322210
Q ss_pred CCccccCHHH-HHHhcCCCcccCCCChhHHHHHHHHHHHH
Q 002026 899 GKTVLNSWST-AKRVLKPEPRYSKMPRKEREALWRRHAEE 937 (978)
Q Consensus 899 ~~t~~~sW~e-~kk~Lk~D~RY~~l~~~eRe~lf~~~ie~ 937 (978)
-.....++. +.+++..|-.|.+++.++...|.+..|+.
T Consensus 446 -~~vdei~~~~~Ek~eE~e~~~d~v~kE~is~i~D~~I~q 484 (590)
T COG5104 446 -RAVDEIFEAIAEKKEEGEIKFDKVDKEDISLIVDGLIKQ 484 (590)
T ss_pred -cchHHHHHHHHHHHhhcchhhhhhhHHHHHHHHHHHHHH
Confidence 111111222 34556677779999887766665555543
No 3
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=100.00 E-value=8.4e-35 Score=324.61 Aligned_cols=260 Identities=28% Similarity=0.488 Sum_probs=218.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhccCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 002026 642 QKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSML 721 (978)
Q Consensus 642 ~k~Ake~F~~LLee~~~~I~~~T~W~e~~kk~~~DpRfkaLd~~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL 721 (978)
+..++..|+.||.+. .|...++|.....++..|+||..|+..+|..+|++||...-+.+...++..++.++++|++||
T Consensus 241 lEer~kqFkEMLkER--gVsafStWEkel~KivfDpR~~~l~s~~Rk~vFeqyvKtr~eee~~ekr~r~k~AkEeF~kLL 318 (617)
T KOG0155|consen 241 LEERRKQFKEMLKER--GVSAFSTWEKELPKIVFDPRYLLLNSGERKQVFEQYVKTRAEEEKREKRKRRKEAKEEFKKLL 318 (617)
T ss_pred HHHHHHHHHHHHHhc--CCcccchHHHhhhhccCCcceeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677899999986 599999999999999999999999999999999999987655555445566678999999999
Q ss_pred hhcCCCCCCCChHHHHHHhccCchhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 722 REKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKERE 800 (978)
Q Consensus 722 ~e~~~It~~T~Wsdvk~~L~~DpRy~aL~~-~dRe~lFeeyI~eLe~~e~e~ere~k~kreee~kLrERErevrkrKeRe 800 (978)
.++ .++..|+|+.+...+.+|+||+++.. .||+.+|++||-.|.+.+++..+.
T Consensus 319 ~e~-~~n~rs~y~~F~~K~gkD~Rfkaver~rDrE~lFNeFv~~lkkkekd~~r~------------------------- 372 (617)
T KOG0155|consen 319 AEA-ELNGRSSYSSFKSKYGKDSRFKAVERNRDREDLFNEFVGELKKKEKDKKRA------------------------- 372 (617)
T ss_pred HhC-cCCcccchHHHHHHhccCchhhhhhhhhhHHHHHHHHHHHHhhhhhHHHHH-------------------------
Confidence 998 78899999999999999999999997 899999999999997755331111
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHHH-------
Q 002026 801 EQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE------- 873 (978)
Q Consensus 801 eke~eR~R~k~rr~Ear~~F~aLL~E~v~~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~e------- 873 (978)
++..++..|..||.+.-.+..+.|..++..|++++||+++.+ .+.|+.||.+||..|..
T Consensus 373 -----------~kek~ks~fv~ll~e~~l~~~S~ws~tk~~le~eery~alds---Ss~re~lf~eyia~l~~~~~sd~e 438 (617)
T KOG0155|consen 373 -----------KKEKLKSDFVKLLEEQELTRKSKWSKTKDTLEDEERYIALDS---SSTRESLFREYIANLGDETASDIE 438 (617)
T ss_pred -----------HHHHHHHHHhhhcccchhhhhhhhhHHHHHhcccHHHhhhcc---cchHHHHHHHHHHHHHhhhcccHH
Confidence 112245679999998877889999999999999999999764 36889999999987731
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHHHHhhhhhccCCccccCHHHHHHhcC
Q 002026 874 ---------------------------------------RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLK 914 (978)
Q Consensus 874 ---------------------------------------k~r~dFr~LL~E~~~~~~~~~~~~d~~t~~~sW~e~kk~Lk 914 (978)
.+.+.|++||.++|.. ...+|++++++|+
T Consensus 439 ~er~~r~ea~lrererev~k~~~~q~~e~~rerek~k~~e~~~~y~all~d~irs------------~e~sw~e~rrilr 506 (617)
T KOG0155|consen 439 QEREKRLEAQLREREREVEKELGNQLRERTREREKQKRGEAEDTYRALLIDLIRS------------TENSWHEARRILR 506 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------------cccchHHhHHHhh
Confidence 0234578888887643 4569999999999
Q ss_pred CCcccCCCC---hhHHHHHHHHHHHHHHHhhhccccccccccCC
Q 002026 915 PEPRYSKMP---RKEREALWRRHAEEIQRKHKSSLDQNEDNHKD 955 (978)
Q Consensus 915 ~D~RY~~l~---~~eRe~lf~~~ie~l~~k~k~~~~~~~~~~~~ 955 (978)
.|+||.+++ +.+.+.||++||+.|.+|.++.|+|..++|..
T Consensus 507 kd~r~as~~~le~~~keklf~dhiksl~~k~re~f~qllde~~~ 550 (617)
T KOG0155|consen 507 KDERYASCDMLEKTRKEKLFDDHIKSLERKRREAFFQLLDEHEK 550 (617)
T ss_pred cccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999876 46789999999999999999999999888753
No 4
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.96 E-value=5.5e-29 Score=286.57 Aligned_cols=335 Identities=23% Similarity=0.378 Sum_probs=279.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 571 TGPTKEECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFK 650 (978)
Q Consensus 571 ~~~skEEak~aFkeLLkE~~V~~~stWekal~kI~~DPRY~aL~s~~ERKqlFeeYi~er~keEreEkr~k~k~Ake~F~ 650 (978)
.+.+|++|+++|++||++++|.+.|+|+++++.|.+|+||.++.++.+++++|+.|..++.+.+..+.....++++++|.
T Consensus 21 ~~~~k~~a~~~f~~~lrd~~v~s~~n~~q~~~~~~~d~~~~~~~~~~~~kqafn~~~~qr~~d~~~~~~~~~kk~k~d~~ 100 (463)
T KOG0152|consen 21 RFKTKEEAKRAFKELLRDANVPSNWNWDQAVRLISNDKRYNALRDSSERKQAFNGYTLQRGRDRVLEESLDVKKAKEDFL 100 (463)
T ss_pred HhhccHHhHHHHHHHHhhcCCCCCCCHHHHHHhccCCCccccccCchhhHHhhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Confidence 36799999999999999999999999999999999999999999999999999999998776777777888899999999
Q ss_pred HHHHhhhcCCCCCccHHHHHHHhcCCchhccCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCC
Q 002026 651 QLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLS 730 (978)
Q Consensus 651 ~LLee~~~~I~~~T~W~e~~kk~~~DpRfkaLd~~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~~It~~ 730 (978)
.||.+. ..+...+.|.+....|..+++|.+....+++.+|++||.+|.+++++++...|++.+.+|+.+|..+..+...
T Consensus 101 ~~l~e~-~~~~~~~~~~~~~~~fa~~p~~~~~~~~~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~~~~~~~~~~~~ 179 (463)
T KOG0152|consen 101 QMLQEE-SKYKSSTEWKTAKELFAGDPRWSEHISEDGRKIYENCITELSQREKEKKLEDRKRNLAADKHLLNSESSIGLD 179 (463)
T ss_pred HhHhhc-ccccccccccccccccccccchhhccchhhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhcchhcccccccc
Confidence 999986 4688899999999999999999998877999999999999999888888777778899999999988889999
Q ss_pred CChHHHHHHhccCchhhc-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 731 SRWSKVKDILRDDPRYKS-VRHEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKEREEQEMERVRL 809 (978)
Q Consensus 731 T~Wsdvk~~L~~DpRy~a-L~~~dRe~lFeeyI~eLe~~e~e~ere~k~kreee~kLrERErevrkrKeReeke~eR~R~ 809 (978)
++|..++..+..|++|.. |+..|++..|++||..++.++.+.. +++ ++ .
T Consensus 180 ~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~---------------~~~---~~------------~ 229 (463)
T KOG0152|consen 180 RDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKE---------------QER---KR------------N 229 (463)
T ss_pred chHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhc---------------chh---hh------------h
Confidence 999999999999999999 9999999999999999987654321 011 11 1
Q ss_pred HHhhHHHHHHHHHHHHHhh----cCCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 810 KVRRKEAVTSFQALLVETI----KDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYERCAHDFRGLLAE 885 (978)
Q Consensus 810 k~rr~Ear~~F~aLL~E~v----~~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~ek~r~dFr~LL~E 885 (978)
.+..+..++.|+.||.++. ++.++.|.++.+.|..|++|-.+. +-+.+-.+.+|.|+|+.|. ...+..+.+|.+
T Consensus 230 ~~~~Rk~rD~~~~lL~~~~~~~ki~s~T~w~~~~~~i~~~~r~~~~l-n~sgstp~dlf~d~ve~l~-~~~~~~~~~i~~ 307 (463)
T KOG0152|consen 230 KRQERKNRDAFRSLLQELPATGKITSTTGWEDLFPSIKDDPRSANAL-NQSGSTPLDLFEDPVEPLE-PRYYEYPPLIKD 307 (463)
T ss_pred hhhhhhhhhhhhhHHHhhccccccccccCCccccchhcCCcchHhhc-CCCCCChhhcccccccccc-cccccchHHHHH
Confidence 1122345677999999997 467999999999999988875431 2233445789999999994 456777889999
Q ss_pred HHHHHHhhhhhccCCccccCHHHHHHhcCCCcccCCCChhHHHHHHHHHHHHHHHhhhc
Q 002026 886 VITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPRKEREALWRRHAEEIQRKHKS 944 (978)
Q Consensus 886 ~~~~~~~~~~~~d~~t~~~sW~e~kk~Lk~D~RY~~l~~~eRe~lf~~~ie~l~~k~k~ 944 (978)
++....+.+ ...++...+..+|.+|..|..++.......|...++....+...
T Consensus 308 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~L~~~~~~~~~~ 360 (463)
T KOG0152|consen 308 CLKERQIEL------SAQTSLQEFNSVLSKDKENEKVDAASMKLVFQSLIEKAKSKIPE 360 (463)
T ss_pred HHHhhcccc------cchhhHHHhhhhhhhhhccccccHHHHHHHHHHHHHHHhccccH
Confidence 876643332 12234577999999999999999888888877777776664443
No 5
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=99.93 E-value=1.6e-24 Score=238.51 Aligned_cols=255 Identities=18% Similarity=0.240 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhccCCH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 002026 642 QKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALDR--KDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKS 719 (978)
Q Consensus 642 ~k~Ake~F~~LLee~~~~I~~~T~W~e~~kk~~~DpRfkaLd~--~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~ 719 (978)
.++|..+|..||.+. ++++..+|..+.+.+ .||+|.-++. --|+.+|..|+..-.+...++......+.+.+|.+
T Consensus 145 ~E~AEk~F~~~L~e~--qVdstw~~~r~i~el-~D~r~~~V~~DP~~rK~~f~kY~~n~~~dq~~~e~n~~~k~~~ef~k 221 (590)
T COG5104 145 KEEAEKEFITMLKEN--QVDSTWPIFRAIEEL-RDPRYWMVDTDPLWRKDLFKKYFENQEKDQREEEENKQRKYINEFCK 221 (590)
T ss_pred HHHHHHHHHHHHhhc--cCCCcccHHHHHHHh-cCccceeecCChHHHHHHHHHHHHhhhhhhhHHHHhHHHHHHHHHHH
Confidence 345666899999986 589988999888887 8899987753 67999999998765444444444445678999999
Q ss_pred HhhhcCCCCCCCChHHHHHHhccCchhhcCCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 720 MLREKGDITLSSRWSKVKDILRDDPRYKSVRH-EDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKE 798 (978)
Q Consensus 720 LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL~~-~dRe~lFeeyI~eLe~~e~e~ere~k~kreee~kLrERErevrkrKe 798 (978)
||.....|...|.|..++.+|.++|-|.++.. .+...+|.+|++.|-.-++. +
T Consensus 222 ml~~n~~I~~yT~w~t~k~~fs~hP~y~s~~nE~~krQ~F~~ykdkl~~~ek~---------------------~----- 275 (590)
T COG5104 222 MLAGNSHIKYYTDWFTFKSIFSKHPYYSSVVNEKTKRQTFQKYKDKLGCYEKY---------------------V----- 275 (590)
T ss_pred HhcCCCccceeehhhhHHhhhccCcchhhhcchHHHHHHHHHHHHHhhhHHHH---------------------H-----
Confidence 99998899999999999999999999998764 68899999999999654321 1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCCChhHHHhhhhcCcccccc--cCCCChHHHHHHHHHHHHHHHH---
Q 002026 799 REEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRAT--NADLDSSDREKLFREHIKTLYE--- 873 (978)
Q Consensus 799 Reeke~eR~R~k~rr~Ear~~F~aLL~E~v~~p~ssW~Eik~~L~kDpr~ra~--~~~Ls~~dre~LF~dhI~~L~e--- 873 (978)
.++++.+|...|..+|..+.-.+-..|.-..-.+-+++||... ...|+..+..--|.+||+.|..
T Consensus 276 ----------~k~~~~~al~~l~e~lr~l~~E~f~~w~l~~~~fd~~~ry~~n~~mk~l~~~d~L~~f~~~v~~lE~el~ 345 (590)
T COG5104 276 ----------GKHMGGTALGRLEEVLRSLGSETFIIWLLNHYVFDSVVRYLKNKEMKPLDRKDILFSFIRYVRRLEKELL 345 (590)
T ss_pred ----------HHhhcccchHHHHHHHHhcCcccchhhhhhhhhhcccHHHHhhcccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 1223455777788899888777888999777888888888653 1346777777779999988852
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHhhhhhccCCccccCHHHHHHhcCCCcccCCCCh---hHHHHHHHHHH
Q 002026 874 ---------------RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR---KEREALWRRHA 935 (978)
Q Consensus 874 ---------------k~r~dFr~LL~E~~~~~~~~~~~~d~~t~~~sW~e~kk~Lk~D~RY~~l~~---~eRe~lf~~~i 935 (978)
..++.||.||.++.... .++.-+.|+++..+|++||||..|-. +.-..||-++|
T Consensus 346 ~~~~e~k~~~~~~~r~~rd~FrtLLr~l~~~~--------ki~~R~kwk~~yp~iKddprfLnlLGr~gsspldlf~D~i 417 (590)
T COG5104 346 SAIEERKAAAAQNARHHRDEFRTLLRKLYSEG--------KIYYRMKWKNAYPLIKDDPRFLNLLGRTGSSPLDLFFDFI 417 (590)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh--------hhhhhhhhhhhcccccCCHHHHHHhccCCCChHHHHHHHH
Confidence 35778999999986431 24556789999999999999998753 46677888888
Q ss_pred HHHHHhhh
Q 002026 936 EEIQRKHK 943 (978)
Q Consensus 936 e~l~~k~k 943 (978)
-++.+...
T Consensus 418 vDlenmy~ 425 (590)
T COG5104 418 VDLENMYG 425 (590)
T ss_pred HhHHHHHH
Confidence 88887554
No 6
>KOG0152 consensus Spliceosomal protein FBP11/Splicing factor PRP40 [RNA processing and modification]
Probab=99.67 E-value=4.1e-16 Score=180.58 Aligned_cols=314 Identities=21% Similarity=0.337 Sum_probs=238.2
Q ss_pred CCHHHHHHHHHHHHHhc-CCCCCCchHhhhcccccCchhhcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 573 PTKEECIIKFKEMLKER-GVAPFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQ 651 (978)
Q Consensus 573 ~skEEak~aFkeLLkE~-~V~~~stWekal~kI~~DPRY~aL~s~~ERKqlFeeYi~er~keEreEkr~k~k~Ake~F~~ 651 (978)
....+++..|.+||.++ .+.+...|.+++..|..||+|.+.... .++.+|+.|+.++.+.+++++....+..+.+|..
T Consensus 90 ~~~kk~k~d~~~~l~e~~~~~~~~~~~~~~~~fa~~p~~~~~~~~-~~r~~~~nci~el~~~ek~k~~~~r~r~~~~~~~ 168 (463)
T KOG0152|consen 90 LDVKKAKEDFLQMLQEESKYKSSTEWKTAKELFAGDPRWSEHISE-DGRKIYENCITELSQREKEKKLEDRKRNLAADKH 168 (463)
T ss_pred hhhhhhHHHHHHhHhhcccccccccccccccccccccchhhccch-hhHHHHHHHHHHHHHhhhHHHHHHHHhhhHhhhc
Confidence 34557899999999998 699999999999999999999998876 8999999999999888877766666778889999
Q ss_pred HHHhhhcCCCCCccHHHHHHHhcCCchhcc-CCHHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHhhhc
Q 002026 652 LLEEVSEDIDHSTDYQTFKKKWGSDPRFEA-LDRKDRELLLNERVLPLKRAAEEKAQAI------RAAAASSFKSMLREK 724 (978)
Q Consensus 652 LLee~~~~I~~~T~W~e~~kk~~~DpRfka-Ld~~ERE~LF~EyI~~LKk~eeEk~r~~------Rk~a~~~Fk~LL~e~ 724 (978)
+|... ..+...+.|..+...+..+++|.. |+..|+...|++||..+.+++.++.+.. -+++++.|+.||.+.
T Consensus 169 ~~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~ldked~l~~~e~~i~~~e~e~~~~~~~~~~~~~~~Rk~rD~~~~lL~~~ 247 (463)
T KOG0152|consen 169 LLNSE-SSIGLDRDWRRAQGRLTEDSGFSEDLDKEDALINFEEHIKDLEKEEDEKEQERKRNKRQERKNRDAFRSLLQEL 247 (463)
T ss_pred chhcc-ccccccchHHHHhhhhhcccccccccchHHhhhhHHHHHhHHHHhhhhhcchhhhhhhhhhhhhhhhhhHHHhh
Confidence 88865 358889999999999999999998 9999999999999998877665432221 146788899999986
Q ss_pred C---CCCCCCChHHHHHHhccCchhhcCC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 725 G---DITLSSRWSKVKDILRDDPRYKSVR---HEDREVIFNEYVRELKAAEEEAEREAKARREEQEKLKEREREMRKRKE 798 (978)
Q Consensus 725 ~---~It~~T~Wsdvk~~L~~DpRy~aL~---~~dRe~lFeeyI~eLe~~e~e~ere~k~kreee~kLrERErevrkrKe 798 (978)
. .|+..|.|.++...|.+|+||..+. ++..+++|++++..|+...-+....
T Consensus 248 ~~~~ki~s~T~w~~~~~~i~~~~r~~~~ln~sgstp~dlf~d~ve~l~~~~~~~~~~----------------------- 304 (463)
T KOG0152|consen 248 PATGKITSTTGWEDLFPSIKDDPRSANALNQSGSTPLDLFEDPVEPLEPRYYEYPPL----------------------- 304 (463)
T ss_pred ccccccccccCCccccchhcCCcchHhhcCCCCCChhhcccccccccccccccchHH-----------------------
Confidence 4 7999999999999999999998874 4678999999999997633211000
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHH------
Q 002026 799 REEQEMERVRLKVRRKEAVTSFQALLVETIKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLY------ 872 (978)
Q Consensus 799 Reeke~eR~R~k~rr~Ear~~F~aLL~E~v~~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~------ 872 (978)
+++-++.+..+. ...+...++...+.+|..+.. ++......+|+..+....
T Consensus 305 -----------------i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~k~~~~~L~~~~~~~~~~~ 361 (463)
T KOG0152|consen 305 -----------------IKDCLKERQIEL--SAQTSLQEFNSVLSKDKENEK----VDAASMKLVFQSLIEKAKSKIPER 361 (463)
T ss_pred -----------------HHHHHHhhcccc--cchhhHHHhhhhhhhhhcccc----ccHHHHHHHHHHHHHHHhccccHH
Confidence 111122222221 223344666777777765543 234344445555554433
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhhhhhccCCccccCHHHHHHhcCCCcccCCCCh-hHHHHHHHHHHHHHHHhhh
Q 002026 873 --------ERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR-KEREALWRRHAEEIQRKHK 943 (978)
Q Consensus 873 --------ek~r~dFr~LL~E~~~~~~~~~~~~d~~t~~~sW~e~kk~Lk~D~RY~~l~~-~eRe~lf~~~ie~l~~k~k 943 (978)
.+..++|+.||+.+. +++..++|..++.++...++|..|.. +.|..+|..|+-.+..+..
T Consensus 362 ~~~~~~~l~~~~~~f~~~l~~~~-----------~~~~~~~~~~a~p~~~~s~~~~~~~~e~~~~~~~~~~~t~~~~~~~ 430 (463)
T KOG0152|consen 362 KRIENRRLRRHANNFRNLLKSLN-----------GIPKSSTWDSAKPLVEDSEEFSALGSEESRVPGFPDYVTPLVSTQP 430 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-----------CCcccCCchhhccccccChhhhhcCCccccceeccccccchhhccc
Confidence 234556777777763 46778899999999999999999966 4799999999998888555
Q ss_pred cc
Q 002026 944 SS 945 (978)
Q Consensus 944 ~~ 945 (978)
..
T Consensus 431 ~~ 432 (463)
T KOG0152|consen 431 GS 432 (463)
T ss_pred cc
Confidence 33
No 7
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.43 E-value=8.2e-13 Score=157.43 Aligned_cols=277 Identities=19% Similarity=0.280 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhcc---CC-HHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHH
Q 002026 642 QKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEA---LD-RKDRELLLNERVLPLKRAAEEKAQAIR-AAAASS 716 (978)
Q Consensus 642 ~k~Ake~F~~LLee~~~~I~~~T~W~e~~kk~~~DpRfka---Ld-~~ERE~LF~EyI~~LKk~eeEk~r~~R-k~a~~~ 716 (978)
.-.|++.|..||..++ ...+.|-.+..++.++|.|.. |. .+-...+|..||.+||.++..++++.. .++-.+
T Consensus 51 ~~~~k~~f~~lvs~~v---~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~ 127 (1100)
T KOG4271|consen 51 NLTAKDKFETLVSQAV---PLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEA 127 (1100)
T ss_pred hhhHHHHHHHHHHHHh---HHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999873 455679999999999999985 33 356677999999999999988877665 567789
Q ss_pred HHHHhhhcCCCCCCCChHHHHHHhccCchhhcCCcccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 717 FKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIF--NEYVRELKAAEEEAEREAKARREEQEKLKEREREMR 794 (978)
Q Consensus 717 Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL~~~dRe~lF--eeyI~eLe~~e~e~ere~k~kreee~kLrERErevr 794 (978)
|..||.....|.. -|.+++++++..|.|..+-..--+.-| -.||+..+..+.--+=-.- -+.++..
T Consensus 128 f~~~l~~ld~~e~--~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l---~ea~kv~------- 195 (1100)
T KOG4271|consen 128 FQVLLPNLDEIEH--LWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDL---VEAEKVY------- 195 (1100)
T ss_pred HHHhcccHHHHHH--HHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCcccccc---ccHHHHH-------
Confidence 9999987755543 677999999999988653110000000 0233322211100000000 0000000
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-hcCCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHHH
Q 002026 795 KRKEREEQEMERVRLKVRRKEAVTSFQALLVET-IKDPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLYE 873 (978)
Q Consensus 795 krKeReeke~eR~R~k~rr~Ear~~F~aLL~E~-v~~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~e 873 (978)
++..+..++.+++-+.++.|+.+|.+. .+.++..|+++...|+++..|.++ ++...-..|..|++.|.+
T Consensus 196 ------eq~~~~~~n~r~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qkl----te~v~t~vy~r~qk~i~e 265 (1100)
T KOG4271|consen 196 ------EQHLEKLRNERKRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKL----TESVYTDVYGRHQKQIIE 265 (1100)
T ss_pred ------HHHHHHhhhhhhhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhc----ccceeeccchHHHHHHHH
Confidence 000111122233445666799999987 568999999999999999887764 455566799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCccccCHHHHHHhcCCCcccCCCCh--hHHHHHHHHHHHHHHHhhhcc
Q 002026 874 RCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKPEPRYSKMPR--KEREALWRRHAEEIQRKHKSS 945 (978)
Q Consensus 874 k~r~dFr~LL~E~~~~~~~~~~~~d~~t~~~sW~e~kk~Lk~D~RY~~l~~--~eRe~lf~~~ie~l~~k~k~~ 945 (978)
+++..|+++|.++... |.....++...+...++++.+|..+.||..+-. -+|++|+-.|+-.+.+-.++.
T Consensus 266 kak~~~qE~l~e~s~L--f~d~~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~t 337 (1100)
T KOG4271|consen 266 KAKEEFQELLLEYSEL--FYDLELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKET 337 (1100)
T ss_pred HHHHHHHHHHHHHhhh--hhhhhhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCC
Confidence 9999999999998655 333234567777889999999999999999876 499999999999998877754
No 8
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=99.08 E-value=1.5e-10 Score=95.58 Aligned_cols=50 Identities=50% Similarity=0.891 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcc-cChHHHHHHHHHH
Q 002026 577 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAI-QSQSARRALFERY 626 (978)
Q Consensus 577 Eak~aFkeLLkE~~V~~~stWekal~kI~~DPRY~aL-~s~~ERKqlFeeY 626 (978)
+|+++|++||++++|+++++|+.++++|.+||||.+| .+..+|+++|++|
T Consensus 1 ~a~~~F~~lL~e~~i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHKITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTTS-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999 8999999999998
No 9
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=99.01 E-value=3.2e-10 Score=94.89 Aligned_cols=52 Identities=42% Similarity=0.665 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCC-CCCchHhhhcccccCchhhcccChHHHHHHHHHHHH
Q 002026 577 ECIIKFKEMLKERGVA-PFSKWEKELPKIVFDPRFKAIQSQSARRALFERYVK 628 (978)
Q Consensus 577 Eak~aFkeLLkE~~V~-~~stWekal~kI~~DPRY~aL~s~~ERKqlFeeYi~ 628 (978)
+++++|++||++.++. ++++|+.++++|.+||||.+|.+..+|++||++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 6889999999999866 999999999999999999999999999999999996
No 10
>PF01846 FF: FF domain; InterPro: IPR002713 The FF domain may be involved in protein-protein interaction []. It often occurs as multiple copies and often accompanies WW domains IPR001202 from INTERPRO. PRP40 from yeast encodes a novel, essential splicing component that associates with the yeast U1 small nuclear ribonucleoprotein particle [].; PDB: 3HFH_B 2KIS_A 2DOD_A 2JUC_A 2LKS_A 1UZC_A 2KZG_A 2L9V_A 2DOF_A 2KFD_A ....
Probab=98.66 E-value=2.9e-08 Score=81.96 Aligned_cols=49 Identities=45% Similarity=0.805 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhhcCCCCCCCChHHHHHHhccCchhhcC--CcccHHHHHHHH
Q 002026 712 AAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSV--RHEDREVIFNEY 761 (978)
Q Consensus 712 ~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL--~~~dRe~lFeey 761 (978)
+++++|++||.++. |++.++|++++..|.+||||.+| +..+|+.+|++|
T Consensus 1 ~a~~~F~~lL~e~~-i~~~s~W~~~~~~l~~dpry~~i~~~~~~R~~lF~ey 51 (51)
T PF01846_consen 1 KAREAFKELLKEHK-ITPYSSWEEVKPKLSKDPRYKAIGDSESERESLFEEY 51 (51)
T ss_dssp HHHHHHHHHHHHTT-S-TTSSHHHHHHHHTTSCHHHHSTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCC-CCCCCcHHHHHHHHccCHHHHHhcCCHHHHHHHHHhC
Confidence 36789999999984 99999999999999999999999 568999999998
No 11
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.64 E-value=1.7e-08 Score=75.38 Aligned_cols=30 Identities=40% Similarity=0.707 Sum_probs=27.7
Q ss_pred CCCCceEEEcCC-CCeeeecCCCCceeccCC
Q 002026 355 QLDAWTAHKTDT-GIVYYYNAVTGESTYEKP 384 (978)
Q Consensus 355 ~~~~W~e~~~~d-Gr~YYyN~~T~~StWekP 384 (978)
++.+|+++.+++ |++||||..|++|+|++|
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 467899999876 999999999999999998
No 12
>smart00441 FF Contains two conserved F residues. A novel motif that often accompanies WW domains. Often contains two conserved Phe (F) residues.
Probab=98.63 E-value=4.5e-08 Score=81.88 Aligned_cols=52 Identities=35% Similarity=0.711 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCChHHHHHHhccCchhhcCC-cccHHHHHHHHHH
Q 002026 712 AAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVR-HEDREVIFNEYVR 763 (978)
Q Consensus 712 ~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL~-~~dRe~lFeeyI~ 763 (978)
+++++|++||.+...++++++|++++.+|.+||||.+|. ..+|+.+|++||.
T Consensus 2 ~~~~~F~~LL~e~~~~~~~~~W~~~~~~~~~d~ry~~l~~~~~r~~lF~~~i~ 54 (55)
T smart00441 2 EAKEAFKELLKEHEVITPDTTWSEARKKLKNDPRYKALLSESEREQLFEDHIE 54 (55)
T ss_pred hHHHHHHHHHHhCCCCCCCCcHHHHHHHHhcChHHHHhcChHHHHHHHHHHHh
Confidence 367899999999977889999999999999999998876 4799999999996
No 13
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=98.59 E-value=4.8e-07 Score=109.29 Aligned_cols=180 Identities=19% Similarity=0.338 Sum_probs=138.2
Q ss_pred HHHHHHHHHHhcCCCCCCchHhhhcccccCchhhc---ccChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 002026 578 CIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKA---IQSQSARRALFERYVKTRAEEERKEKRAAQ-KAAIEGFKQLL 653 (978)
Q Consensus 578 ak~aFkeLLkE~~V~~~stWekal~kI~~DPRY~a---L~s~~ERKqlFeeYi~er~keEreEkr~k~-k~Ake~F~~LL 653 (978)
|+..|-.||... |...+.|-++..+|-..|.|.- |.+...-+.+|+.||.+++.++...+|... -..-++|..||
T Consensus 54 ~k~~f~~lvs~~-v~~~~~w~~v~~~~~~hpd~~~~v~l~gtr~a~~~~~~~i~~~k~~~~~~r~~~~~~~l~~~f~~~l 132 (1100)
T KOG4271|consen 54 AKDKFETLVSQA-VPLHTYWNQVSAKIDRHPDYMNYVTLEGTRKAFEMFERHISELKEEHIINRRRTYVPRLPEAFQVLL 132 (1100)
T ss_pred HHHHHHHHHHHH-hHHHHHHHHHHHHhhcCcchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567787777654 3444559999999999999986 455567788999999998888766544433 34468888888
Q ss_pred HhhhcCCCCCccHHHHHHHhcCCchhccC----------------------------CHHHHHHHHHHHHHHhhHHHHHH
Q 002026 654 EEVSEDIDHSTDYQTFKKKWGSDPRFEAL----------------------------DRKDRELLLNERVLPLKRAAEEK 705 (978)
Q Consensus 654 ee~~~~I~~~T~W~e~~kk~~~DpRfkaL----------------------------d~~ERE~LF~EyI~~LKk~eeEk 705 (978)
... ..|.+ -|.++++.++..|.|..| +--+.+++|+.|+..|..+.
T Consensus 133 ~~l-d~~e~--~~~~a~~~Me~~p~f~~lfv~le~~~w~~ts~i~k~e~~ripsdll~l~ea~kv~eq~~~~~~n~r--- 206 (1100)
T KOG4271|consen 133 PNL-DEIEH--LWSQARKLMECHPLFHVLFVVLELTPWDATSHIDKMENERIPSDLLDLVEAEKVYEQHLEKLRNER--- 206 (1100)
T ss_pred ccH-HHHHH--HHHHHHHHHHhChhhhhhheeecccCCCCcchhhccCcccCCccccccccHHHHHHHHHHHhhhhh---
Confidence 764 23443 466999999999888521 11366899999988775432
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhccCchhhcCCcccHHHHHHHHHHHHHH
Q 002026 706 AQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKA 767 (978)
Q Consensus 706 ~r~~Rk~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL~~~dRe~lFeeyI~eLe~ 767 (978)
.|-+.+.+|+.+|++...|+++-.|.++...|+++.-|+.+....-.++|..|..+|-.
T Consensus 207 ---~~i~~~~~fke~l~e~~~itpg~P~eea~~~~~n~d~~qklte~v~t~vy~r~qk~i~e 265 (1100)
T KOG4271|consen 207 ---KRIEMRRAFKENLEESPFITPGKPWEEARSFIMNEDFYQKLTESVYTDVYGRHQKQIIE 265 (1100)
T ss_pred ---hhHHHHHHHHHhhhcCCccCCCCCHHHhhchhhhhhHHHhcccceeeccchHHHHHHHH
Confidence 24457789999999999999999999999999999999999988888888888888754
No 14
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.41 E-value=2.6e-07 Score=69.00 Aligned_cols=31 Identities=39% Similarity=0.693 Sum_probs=29.0
Q ss_pred CCCCceEEEcCCCCeeeecCCCCceeccCCC
Q 002026 355 QLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 385 (978)
Q Consensus 355 ~~~~W~e~~~~dGr~YYyN~~T~~StWekP~ 385 (978)
++.+|.++.+.+|+.||||+.|++|+|++|.
T Consensus 1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 3679999999999999999999999999996
No 15
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.40 E-value=2.9e-07 Score=68.76 Aligned_cols=28 Identities=36% Similarity=0.820 Sum_probs=25.8
Q ss_pred CCcEEEEcCC-CceEEEeCCCCeeeccCC
Q 002026 409 TDWALVTTND-GKKYYYNSKMKVSSWQIP 436 (978)
Q Consensus 409 ~~W~e~~t~d-Gr~YyyN~~T~~S~We~P 436 (978)
.+|+++.+++ |++||||..|++|+|+.|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 4699999876 999999999999999987
No 16
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.35 E-value=1.9e-06 Score=102.56 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=26.1
Q ss_pred HHHHHHHHhc---C--CCCCCchHhhhcccccCchhhc-ccCh--HHHHHHHHHHHHHHH
Q 002026 580 IKFKEMLKER---G--VAPFSKWEKELPKIVFDPRFKA-IQSQ--SARRALFERYVKTRA 631 (978)
Q Consensus 580 ~aFkeLLkE~---~--V~~~stWekal~kI~~DPRY~a-L~s~--~ERKqlFeeYi~er~ 631 (978)
+.|..+|+=. | +++.++= ...+.+|-+|.+ |.+. .+-|...-.|+.+.-
T Consensus 815 esFs~lLeLvLl~GNyMn~gSrN---a~afgF~is~L~kL~dTKsaDqk~TLLHfLae~~ 871 (1102)
T KOG1924|consen 815 ESFSKLLELVLLVGNYMNSGSRN---AQAFGFNISFLCKLRDTKSADQKTTLLHFLAEIC 871 (1102)
T ss_pred hhHHHHHHHHHHHhccccccccc---chhhccchHHHHhhccccccchhhHHHHHHHHHH
Confidence 3466666542 1 4444443 234667777765 4332 256666666666544
No 17
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.33 E-value=5.2e-07 Score=66.66 Aligned_cols=30 Identities=37% Similarity=0.684 Sum_probs=28.2
Q ss_pred CCCceEEEcCCCCeeeecCCCCceeccCCC
Q 002026 356 LDAWTAHKTDTGIVYYYNAVTGESTYEKPA 385 (978)
Q Consensus 356 ~~~W~e~~~~dGr~YYyN~~T~~StWekP~ 385 (978)
+.+|+++.+.+|+.||||..|++|+|++|.
T Consensus 1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 468999999999999999999999999995
No 18
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=6.9e-06 Score=97.87 Aligned_cols=6 Identities=50% Similarity=0.944 Sum_probs=2.6
Q ss_pred HHHHHH
Q 002026 648 GFKQLL 653 (978)
Q Consensus 648 ~F~~LL 653 (978)
.|..||
T Consensus 816 sFs~lL 821 (1102)
T KOG1924|consen 816 SFSKLL 821 (1102)
T ss_pred hHHHHH
Confidence 344444
No 19
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.17 E-value=1.9e-06 Score=64.37 Aligned_cols=29 Identities=34% Similarity=0.850 Sum_probs=27.6
Q ss_pred CCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 002026 409 TDWALVTTNDGKKYYYNSKMKVSSWQIPS 437 (978)
Q Consensus 409 ~~W~e~~t~dGr~YyyN~~T~~S~We~P~ 437 (978)
.+|.++++.+|++||||..|++|+|+.|.
T Consensus 3 ~gW~~~~~~~g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 3 PGWEERKDPDGRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence 67999999999999999999999999996
No 20
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.02 E-value=5.1e-06 Score=61.33 Aligned_cols=29 Identities=34% Similarity=0.772 Sum_probs=27.4
Q ss_pred CCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 002026 409 TDWALVTTNDGKKYYYNSKMKVSSWQIPS 437 (978)
Q Consensus 409 ~~W~e~~t~dGr~YyyN~~T~~S~We~P~ 437 (978)
.+|.++++.+|++||||..|++|+|+.|.
T Consensus 2 ~~W~~~~~~~g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPDGRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence 57999999999999999999999999995
No 21
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=8.8e-05 Score=73.41 Aligned_cols=36 Identities=31% Similarity=0.662 Sum_probs=31.9
Q ss_pred cCCCCCceEEEcC-CCCeeeecCCCCceeccCCCCCC
Q 002026 353 NEQLDAWTAHKTD-TGIVYYYNAVTGESTYEKPAGFK 388 (978)
Q Consensus 353 ~~~~~~W~e~~~~-dGr~YYyN~~T~~StWekP~~l~ 388 (978)
..++.+|+...+- .||.||||+.|++|+||+|.+..
T Consensus 5 ~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~ 41 (163)
T KOG3259|consen 5 EKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS 41 (163)
T ss_pred ccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence 4688899999886 89999999999999999998743
No 22
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=97.31 E-value=0.0002 Score=75.32 Aligned_cols=68 Identities=22% Similarity=0.452 Sum_probs=58.7
Q ss_pred CCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeec
Q 002026 354 EQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSW 433 (978)
Q Consensus 354 ~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~W 433 (978)
.++++|..--+-.||+||.++.++.|.|..|-+-. -|+ .+|+.|.+..--+||||..+|.++.
T Consensus 93 PLPpgWav~~T~~grkYYIDHn~~tTHW~HPlerE----------------gLp-pGW~rv~s~e~GtyY~~~~~k~tQy 155 (271)
T KOG1891|consen 93 PLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLERE----------------GLP-PGWKRVFSPEKGTYYYHEEMKRTQY 155 (271)
T ss_pred CCCCCcceeeEecCceeEeecCCCcccccChhhhc----------------cCC-cchhhccccccceeeeecccchhhh
Confidence 68899999999999999999999999999997632 234 6799999886669999999999998
Q ss_pred cCChh
Q 002026 434 QIPSE 438 (978)
Q Consensus 434 e~P~e 438 (978)
+-|-.
T Consensus 156 ~HPc~ 160 (271)
T KOG1891|consen 156 EHPCI 160 (271)
T ss_pred cCCCC
Confidence 87753
No 23
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.032 Score=70.35 Aligned_cols=22 Identities=14% Similarity=0.042 Sum_probs=10.6
Q ss_pred CcccCCCCCCcccceeeccCCc
Q 002026 45 TATNDSISGPSQAKSVTATGGV 66 (978)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~ 66 (978)
.+-+-.+.-+.++-.+..+|+.
T Consensus 697 ~~~~P~~~~~~~~~~~~~~~~~ 718 (1049)
T KOG0307|consen 697 GHQSPPLTQLRQAVGAAPTPKQ 718 (1049)
T ss_pred cccCCCccccccccccCCCCCC
Confidence 3444445555555444444444
No 24
>PHA03247 large tegument protein UL36; Provisional
Probab=96.95 E-value=0.37 Score=65.69 Aligned_cols=11 Identities=9% Similarity=0.030 Sum_probs=4.8
Q ss_pred CCccccccccc
Q 002026 114 PNQQFQPNMNK 124 (978)
Q Consensus 114 ~~~~~~~~~~~ 124 (978)
.-+-.+..+++
T Consensus 2522 ~~~~~~~~~p~ 2532 (3151)
T PHA03247 2522 DEPVGEPVHPR 2532 (3151)
T ss_pred CCCCCCCCCch
Confidence 33444444444
No 25
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=96.90 E-value=0.0098 Score=63.38 Aligned_cols=54 Identities=26% Similarity=0.368 Sum_probs=38.1
Q ss_pred cccCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002026 232 AIQHQIYPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPN 289 (978)
Q Consensus 232 ~~~~~~~p~~p~~p~~~~~~q~~~~~pp~~~~~~~~p~~~y~~~~~g~~~~p~~g~~~ 289 (978)
.++++.||+.+.+|. +++.|..+.||.|+|---||.++-+.+.||+ .||.|.|.
T Consensus 153 ~gmp~~~ppp~g~pp--~~~pgv~mp~~g~pg~~~pp~mpi~~g~p~~--~p~pg~p~ 206 (341)
T KOG2893|consen 153 RGMPGAYPPPRGYPP--APAPGVYMPPPGMPGAYPPPRMPIGHGPPGG--PPMPGPPQ 206 (341)
T ss_pred CCCCCCCCCCCCCCC--CCCCccccCCCCCCCCCCCCcCcCCCCCCCC--CCCCCCCc
Confidence 456666776666663 6777878888889888888888877776666 45555553
No 26
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00043 Score=68.68 Aligned_cols=32 Identities=31% Similarity=0.789 Sum_probs=28.4
Q ss_pred CCCCCcEEEEc-CCCceEEEeCCCCeeeccCChh
Q 002026 406 LTGTDWALVTT-NDGKKYYYNSKMKVSSWQIPSE 438 (978)
Q Consensus 406 l~~~~W~e~~t-~dGr~YyyN~~T~~S~We~P~e 438 (978)
|| .+|+.... ..||+||||+.|++|+|+.|.+
T Consensus 7 LP-~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~ 39 (163)
T KOG3259|consen 7 LP-PGWEKRMSRSSGRPYYFNTETNESQWERPSG 39 (163)
T ss_pred CC-chhheeccccCCCcceeccccchhhccCCCc
Confidence 55 78998765 6999999999999999999987
No 27
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=96.44 E-value=0.26 Score=56.77 Aligned_cols=7 Identities=57% Similarity=0.909 Sum_probs=2.9
Q ss_pred ccCCCCC
Q 002026 47 TNDSISG 53 (978)
Q Consensus 47 ~~~~~~~ 53 (978)
-|+-|+|
T Consensus 215 ~n~~i~~ 221 (518)
T KOG1830|consen 215 PNNQISG 221 (518)
T ss_pred cchhhhh
Confidence 3444444
No 28
>PHA03247 large tegument protein UL36; Provisional
Probab=96.28 E-value=0.41 Score=65.24 Aligned_cols=13 Identities=23% Similarity=0.197 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCC
Q 002026 271 PYPAAYPSPFPLP 283 (978)
Q Consensus 271 ~y~~~~~g~~~~p 283 (978)
+|.+..+.|-..|
T Consensus 2870 sp~~~ppaP~~PP 2882 (3151)
T PHA03247 2870 SPAAKPAAPARPP 2882 (3151)
T ss_pred CCCCCCCCCCCCC
Confidence 4444444444333
No 29
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=96.25 E-value=0.12 Score=60.50 Aligned_cols=14 Identities=29% Similarity=0.230 Sum_probs=7.6
Q ss_pred CCCCCccccccccc
Q 002026 111 GYSPNQQFQPNMNK 124 (978)
Q Consensus 111 ~~~~~~~~~~~~~~ 124 (978)
|.+.+|+-++-++|
T Consensus 277 gise~~l~~~~t~~ 290 (569)
T KOG3671|consen 277 GISEAQLTERDTMK 290 (569)
T ss_pred CCCcccccchhhcc
Confidence 55566665544443
No 30
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.35 Score=60.16 Aligned_cols=11 Identities=27% Similarity=0.579 Sum_probs=7.6
Q ss_pred cCCCceEEEeC
Q 002026 416 TNDGKKYYYNS 426 (978)
Q Consensus 416 t~dGr~YyyN~ 426 (978)
+.+||+|+-|-
T Consensus 355 ~~~gr~f~Cn~ 365 (1007)
T KOG1984|consen 355 IDGGRKFICNF 365 (1007)
T ss_pred ecCCceEEecC
Confidence 56788887654
No 31
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.95 E-value=0.087 Score=59.09 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=15.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002026 255 LLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPN 289 (978)
Q Consensus 255 ~~~pp~~~~~~~~p~~~y~~~~~g~~~~p~~g~~~ 289 (978)
..||+.|+|+|--|-+.-+.-.+|| .|++|+|+
T Consensus 280 qq~p~pp~~~ppRP~m~l~phl~gp--pPga~pPa 312 (498)
T KOG4849|consen 280 QQQPQPPMGQPPRPMMQLSPHLMGP--PPGAGPPA 312 (498)
T ss_pred ccCCCCCCCCCCCcccccCcccCCC--CCCCCCCC
Confidence 3344444444444445555555555 45555543
No 32
>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.95 E-value=0.82 Score=57.06 Aligned_cols=22 Identities=9% Similarity=0.104 Sum_probs=12.0
Q ss_pred CcEEEEcCCCceEEEeCCCCeee
Q 002026 410 DWALVTTNDGKKYYYNSKMKVSS 432 (978)
Q Consensus 410 ~W~e~~t~dGr~YyyN~~T~~S~ 432 (978)
..|-+++ +=...|||+.+....
T Consensus 364 n~C~~~n-~vp~~yf~~L~~~gr 385 (1007)
T KOG1984|consen 364 NFCGSKN-QVPDDYFNHLGPTGR 385 (1007)
T ss_pred cCCCccc-cCChhhcccCCCccc
Confidence 3444433 335667888776543
No 33
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.79 E-value=0.22 Score=61.10 Aligned_cols=30 Identities=13% Similarity=0.038 Sum_probs=18.5
Q ss_pred cccCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 002026 196 LTLRTKDTSSAFGDFYSSAGLRPSVPTPSA 225 (978)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~ 225 (978)
.+..+..+|+.++..+|...+||+.+++++
T Consensus 605 ~p~~~~~ppPgf~PnpPpP~~~Pg~np~~p 634 (894)
T KOG0132|consen 605 FPGPMWHPPPGFVPNPPPPPLRPGYNPYPP 634 (894)
T ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 344455666666666777777777664444
No 34
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=95.69 E-value=0.6 Score=54.94 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=5.2
Q ss_pred CCCCCCCCCC
Q 002026 171 MPTIPSFSTP 180 (978)
Q Consensus 171 ~~~~~~~~~~ 180 (978)
++-+|++|.|
T Consensus 384 ~~~ap~~P~P 393 (554)
T KOG0119|consen 384 RPHAPNGPPP 393 (554)
T ss_pred cccCCCCCCC
Confidence 5555555433
No 35
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=95.62 E-value=1.1 Score=52.99 Aligned_cols=9 Identities=22% Similarity=0.235 Sum_probs=5.2
Q ss_pred CChhhhhhc
Q 002026 7 LPPEVQQLT 15 (978)
Q Consensus 7 ~~~~~~~~~ 15 (978)
+.+|.++|.
T Consensus 315 ~d~ey~~lm 323 (554)
T KOG0119|consen 315 FDREYASLM 323 (554)
T ss_pred cCHHHHhhh
Confidence 456666655
No 36
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=1.3 Score=56.71 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=11.4
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 002026 249 VSPQGPLLRPPQMGVRPWLP 268 (978)
Q Consensus 249 ~~~q~~~~~pp~~~~~~~~p 268 (978)
..|++-|-+||+--|-.+.|
T Consensus 858 ~~p~~~~~~~p~~~g~~~~~ 877 (1049)
T KOG0307|consen 858 PGPPGSWNQPPALQGSYRKP 877 (1049)
T ss_pred CCCCCcccCCCcccCCCCCC
Confidence 34566677666665554433
No 37
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=95.41 E-value=2.1 Score=50.67 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCC
Q 002026 280 FPLPAHGMPNPSV 292 (978)
Q Consensus 280 ~~~p~~g~~~~~~ 292 (978)
.+||..|...+++
T Consensus 434 PPmPs~gagppPP 446 (569)
T KOG3671|consen 434 PPMPSTGAGPPPP 446 (569)
T ss_pred CCCCccCCCCCCC
Confidence 3356666554444
No 38
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=95.35 E-value=1.7 Score=50.43 Aligned_cols=8 Identities=13% Similarity=0.538 Sum_probs=3.4
Q ss_pred CcCCCCCC
Q 002026 235 HQIYPTYP 242 (978)
Q Consensus 235 ~~~~p~~p 242 (978)
.++-.+||
T Consensus 371 ~pl~~~~p 378 (518)
T KOG1830|consen 371 PPLCNPFP 378 (518)
T ss_pred CCCCCCCc
Confidence 33444455
No 39
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=95.31 E-value=0.56 Score=57.72 Aligned_cols=7 Identities=43% Similarity=0.396 Sum_probs=3.3
Q ss_pred CCCCccc
Q 002026 94 VPPGVSS 100 (978)
Q Consensus 94 ~~~~~~~ 100 (978)
+..|+.|
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 3445554
No 40
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=95.22 E-value=0.24 Score=53.11 Aligned_cols=9 Identities=22% Similarity=-0.045 Sum_probs=5.3
Q ss_pred CCCHHHHHH
Q 002026 572 GPTKEECII 580 (978)
Q Consensus 572 ~~skEEak~ 580 (978)
..+.||++.
T Consensus 321 disleerra 329 (341)
T KOG2893|consen 321 DISLEERRA 329 (341)
T ss_pred cccHHHHhh
Confidence 356776654
No 41
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.15 E-value=0.49 Score=53.34 Aligned_cols=21 Identities=33% Similarity=0.474 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC
Q 002026 267 LPFLPYPAAYPSPFPLPAHGMP 288 (978)
Q Consensus 267 ~p~~~y~~~~~g~~~~p~~g~~ 288 (978)
|+-+--|+.|+-|- ...+|.+
T Consensus 311 Paph~NpaffpPP~-~~s~Gpp 331 (498)
T KOG4849|consen 311 PAPHNNPAFFPPPQ-LGSMGPP 331 (498)
T ss_pred CCcccCcccCCCCC-cCcCCCC
Confidence 34344445554443 3344443
No 42
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.091 Score=60.50 Aligned_cols=84 Identities=12% Similarity=0.148 Sum_probs=61.6
Q ss_pred cCCCCCceEEEcCCC---CeeeecCCCCc-eeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCC
Q 002026 353 NEQLDAWTAHKTDTG---IVYYYNAVTGE-STYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKM 428 (978)
Q Consensus 353 ~~~~~~W~e~~~~dG---r~YYyN~~T~~-StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T 428 (978)
..++.+|....+.+| ..||+|+.+.. |+|..|........ + ....+....++=..|....++.|.+||||..-
T Consensus 59 ~glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~sg~~p~~-l--~~~~~vg~~~~l~~~h~~~~~~g~r~F~~~i~ 135 (358)
T KOG0940|consen 59 GGLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPRSGVNPGH-L--TYFRFVGGVLALAGWHMRFTDTGQRPFYKHIL 135 (358)
T ss_pred CCCCcceeeeeccccCCcceeeeeecccccccccCCccCCCCCc-c--cccccccccccccceeeEecCCCceehhhhhh
Confidence 345667999999999 99999999994 99999987632211 1 01111111122237999999999999999999
Q ss_pred CeeeccCChhH
Q 002026 429 KVSSWQIPSEV 439 (978)
Q Consensus 429 ~~S~We~P~el 439 (978)
+.++|-.|.+.
T Consensus 136 ~ktt~ldd~e~ 146 (358)
T KOG0940|consen 136 KKTTTLDDREA 146 (358)
T ss_pred cCccccCchhh
Confidence 99999888775
No 43
>KOG2375 consensus Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=93.07 E-value=13 Score=46.61 Aligned_cols=13 Identities=38% Similarity=0.205 Sum_probs=6.9
Q ss_pred ccCCccccccccc
Q 002026 20 ISGKPVGGSLVAS 32 (978)
Q Consensus 20 ~~~~~~~~~~~~~ 32 (978)
++|+..+++-|+.
T Consensus 424 ~s~~~~~~~pvt~ 436 (756)
T KOG2375|consen 424 DSGKAEEESPVTV 436 (756)
T ss_pred cccccccCCCccc
Confidence 4555555555443
No 44
>PF03154 Atrophin-1: Atrophin-1 family; InterPro: IPR002951 Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA (OMIM:125370) is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins [, ]. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity [].. This entry includes Atrophin-1 and related proteins.
Probab=91.94 E-value=29 Score=44.64 Aligned_cols=30 Identities=13% Similarity=0.210 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHhcCCCCCCchHhhhcccccCchhhcccCh
Q 002026 577 ECIIKFKEMLKERGVAPFSKWEKELPKIVFDPRFKAIQSQ 616 (978)
Q Consensus 577 Eak~aFkeLLkE~~V~~~stWekal~kI~~DPRY~aL~s~ 616 (978)
-.-+.|.+-|..- -|+-++ +|-.|+-|.+-
T Consensus 549 SQSArF~kHldRG-~NSCaR---------TDL~F~Pl~gS 578 (982)
T PF03154_consen 549 SQSARFNKHLDRG-YNSCAR---------TDLYFVPLPGS 578 (982)
T ss_pred hHHHHHHHHhhcc-cccccc---------cceeeeecCcc
Confidence 3456788887654 454443 56667767654
No 45
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=91.23 E-value=17 Score=47.59 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=16.7
Q ss_pred cCCCCCCccCcccCCCCCCCCC
Q 002026 76 NSEGSGHSASSVINSNPSVPPG 97 (978)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~ 97 (978)
|++...--|+|++|+..-|||-
T Consensus 1688 ~~~~~~~~aes~~n~~~~vPPk 1709 (1958)
T KOG0391|consen 1688 NPKHASVLAESGINYDKPVPPK 1709 (1958)
T ss_pred CcHHHhHHhhcccCccCcCCch
Confidence 4555555688999999988884
No 46
>PHA03378 EBNA-3B; Provisional
Probab=90.38 E-value=16 Score=45.08 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=41.4
Q ss_pred CCCCCCCCCCCCCCCCCCC-----------------CCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 002026 249 VSPQGPLLRPPQMGVRPWL-----------------PFLPYPAA-----YPSPFPLPAHGMPNPSVSQIDAQPPGLSSV 305 (978)
Q Consensus 249 ~~~q~~~~~pp~~~~~~~~-----------------p~~~y~~~-----~~g~~~~p~~g~~~~~~~~p~~~ppg~~~~ 305 (978)
++|-.+-++|++.+|-+.| |-+-.++. ..|+-+-|..|.+.-.+..|..+||..+|.
T Consensus 802 ~~P~~~q~~~~~~~gq~gp~k~ilrqlltggvk~grps~k~~a~~~r~~~~~~~p~p~~gt~~~~vqapvf~pp~~~p~ 880 (991)
T PHA03378 802 AGPTSMQLMPRAAPGQQGPTKQILRQLLTGGVKRGRPSLKKPAALERQAAAGPTPSPGSGTSDKIVQAPVFYPPVLQPI 880 (991)
T ss_pred CCCccceecCCCCccccCcHHHHHHHHhhcccccCCcccccchhhhhhcccCCCCCCCCCCccceeecccccCCccchH
Confidence 4444556788888765543 44455542 467777888998888888999999999986
No 47
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=89.76 E-value=0.9 Score=56.02 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=15.7
Q ss_pred hhccCCCCCCCCCCCCCCCccccccCc
Q 002026 128 VEDAGLGSSTSTNSQPVQASVRTFSDS 154 (978)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 154 (978)
.+-.+.+.|-|.++.+++.|-+.++++
T Consensus 270 sA~~s~~~S~s~ppppap~p~~~~~~a 296 (830)
T KOG1923|consen 270 SACDSQPGSGSGPPPPAPLPHTAQSDA 296 (830)
T ss_pred hhcccCCCCCCCCCCCCCCCCcccccC
Confidence 333344466677777777775544444
No 48
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=89.73 E-value=0.38 Score=53.58 Aligned_cols=38 Identities=29% Similarity=0.469 Sum_probs=32.5
Q ss_pred ccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCC
Q 002026 352 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKG 389 (978)
Q Consensus 352 ~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~ 389 (978)
.......|++.+.++|.+||||..|++|.|..|..+.+
T Consensus 146 ~~~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~t 183 (336)
T KOG0150|consen 146 ANAETKEWVEGKNESGPTYYSNKRTNESVWKPPRISFT 183 (336)
T ss_pred hhhhhhhcccccCCCCCCcceecCCCccccCCCCcccc
Confidence 33445579999999999999999999999999987653
No 49
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=89.10 E-value=1.1 Score=54.64 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=64.8
Q ss_pred ccccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCCCCC-------------C-------C-C-------CCCC-C
Q 002026 350 ASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPD-------------K-------V-P-------VQPT-P 400 (978)
Q Consensus 350 ~a~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~~~e-------------~-------~-~-------~qp~-P 400 (978)
.++-.++..|.+.....++.|+--..++.++||.+++..-..+ . . + .|++ +
T Consensus 128 d~~~~~~~~~~es~~kr~~sy~~m~n~g~~~~eeeee~d~g~~n~~~~~~~~E~~e~s~~~s~~m~ssy~aPsts~s~~~ 207 (984)
T KOG3209|consen 128 DQELLLPPNSAESYRKRTKSYSIMENAGITTPEEEEEEDPGWENGSGQNYSVEMEESSYPTSSDMPSSYFAPSTSQSTTP 207 (984)
T ss_pred cccccCCCcchhcccccCcceeehhccCCCCcccccccCccccccCCcccchhhhhccCCccCCCcccccccccCCCCCc
Confidence 3555678899999999999999999999999999987631100 0 0 0 0111 1
Q ss_pred c------c----cccCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 002026 401 I------S----MEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 437 (978)
Q Consensus 401 ~------~----~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~P~ 437 (978)
. . ..+++ ..|+.-.|+.|.+||.+.-|+.++|-+|.
T Consensus 208 ~~~~~~~~~e~~~gplp-~nwemayte~gevyfiDhntkttswLdpr 253 (984)
T KOG3209|consen 208 MDRYSPATQEDNLGPLP-HNWEMAYTEQGEVYFIDHNTKTTSWLDPR 253 (984)
T ss_pred ccccCccccccccCCCC-ccceEeEeecCeeEeeecccccceecChh
Confidence 1 1 12244 68999999999999999999999999999
No 50
>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]
Probab=86.78 E-value=80 Score=38.03 Aligned_cols=114 Identities=20% Similarity=0.040 Sum_probs=59.9
Q ss_pred cceeeccCCcccCCccccccCCCCCCccCcccCCCCCCCCCccceeeccccccCCC-CCCcccccccccchhhhccCCCC
Q 002026 57 AKSVTATGGVIPQSSFSFQNSEGSGHSASSVINSNPSVPPGVSSFTYSASQTVVGY-SPNQQFQPNMNKLEAVEDAGLGS 135 (978)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 135 (978)
|..+..--+--|.+.=+|--.+--+|.++.--||+.-..+-+-=|+ +-+-+-| .-+--.++|+-+ +.++.+
T Consensus 239 an~~~ge~~k~P~~~~~~asapk~eg~~s~sd~pvne~~~e~~i~s---~~~~~~f~k~~e~paps~a~-----qlp~~s 310 (524)
T KOG0702|consen 239 ANIFAGEPFKQPVSRPSFASAPKNEGWASLSDNPVNEAKSENVITS---PGSFADFLKFEEIPAPSVAM-----QLPPYS 310 (524)
T ss_pred ccccccCCCCCCccCccccccccccCCcccccCccccccccccccC---cccchhhcccccccCcchhh-----hcCCcC
Confidence 3333333344456665666666667777765555544433332111 0011112 223334444411 444444
Q ss_pred CCCCCCCCCCCccc-cccCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002026 136 STSTNSQPVQASVR-TFSDSTVATSSATALSTTTSWMPTIPSFSTP 180 (978)
Q Consensus 136 ~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (978)
++....|+....+- ++..|..++..++++.. .+||.+++.+..
T Consensus 311 s~~~~~q~t~~~~~nd~~ssf~~~~~Ap~~~~--~s~p~i~s~~~s 354 (524)
T KOG0702|consen 311 STVDQHQPTIPSPWNDQGSSFGATPVAPPLWV--ASPPSIGSNLLS 354 (524)
T ss_pred CCccccCCCCCCcccccCcccccccccCCccc--cCCCCccccccc
Confidence 44444444443344 67788888999998887 888888876654
No 51
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.43 E-value=8.3 Score=48.45 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=13.4
Q ss_pred EEEcCCCceEEEeCCCCe
Q 002026 413 LVTTNDGKKYYYNSKMKV 430 (978)
Q Consensus 413 e~~t~dGr~YyyN~~T~~ 430 (978)
-+.|=|...+||+...+-
T Consensus 336 gfi~fDs~ihfy~~~~~~ 353 (887)
T KOG1985|consen 336 GFITFDSTIHFYSVQGDL 353 (887)
T ss_pred EEEEeeceeeEEecCCCc
Confidence 356778888888877666
No 52
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.56 E-value=11 Score=45.96 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=24.1
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCCCcccCCCCCCCccCCCCCCCCCCCCCCCCC
Q 002026 170 WMPTIPSFSTPPGLFVTPQT-QAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPS 224 (978)
Q Consensus 170 ~~~~~~~~~~~p~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~ 224 (978)
+||+++++|.-|..+---.. -++++ +...-|+.|+++++. -..+||+.|.--
T Consensus 163 ~~p~P~~lpq~pqqq~~m~~qs~q~~-psq~~p~vpp~~~g~--~~~~~Pn~p~~~ 215 (728)
T KOG4592|consen 163 QVPTPTMLPQQPQQQHHMKQQSQQQP-PSQAQPKVPPGFLGT--TSPPRPNLPELL 215 (728)
T ss_pred cCCCCCCccccccccchhhhhccCCC-hhhcCCCCCCcccCc--CCCCCCCCCccC
Confidence 46666666665543311111 24444 222223444455444 456677776443
No 53
>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.20 E-value=14 Score=46.56 Aligned_cols=15 Identities=27% Similarity=0.408 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHh
Q 002026 574 TKEECIIKFKEMLKE 588 (978)
Q Consensus 574 skEEak~aFkeLLkE 588 (978)
+.+|+|+....+|+.
T Consensus 378 ~L~~ck~~i~~lL~~ 392 (887)
T KOG1985|consen 378 PLKECKDLIETLLKT 392 (887)
T ss_pred eHHHHHHHHHHHHHH
Confidence 566666666555554
No 54
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.43 E-value=1.2e+02 Score=38.48 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=8.3
Q ss_pred CCcEEEE-cCCCce
Q 002026 409 TDWALVT-TNDGKK 421 (978)
Q Consensus 409 ~~W~e~~-t~dGr~ 421 (978)
+-|..-. +.||+.
T Consensus 233 ~IW~LsDvd~DGkL 246 (1118)
T KOG1029|consen 233 HIWTLSDVDGDGKL 246 (1118)
T ss_pred hheeeeccCCCCcc
Confidence 6787754 567753
No 55
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=81.35 E-value=0.73 Score=51.42 Aligned_cols=53 Identities=19% Similarity=0.344 Sum_probs=41.3
Q ss_pred CceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhHH
Q 002026 377 GESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVT 440 (978)
Q Consensus 377 ~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~P~el~ 440 (978)
...+|..|.++.+..+.. ....-|.+-..++|..||||..|++|+|..|....
T Consensus 130 ~a~q~~~~~g~v~~~e~~-----------~~~k~wv~~Knes~~~yy~n~~t~esvwk~P~~~~ 182 (336)
T KOG0150|consen 130 PALQEYIPTGLVTKDEAN-----------AETKEWVEGKNESGPTYYSNKRTNESVWKPPRISF 182 (336)
T ss_pred ccchhhccccccchhhhh-----------hhhhhcccccCCCCCCcceecCCCccccCCCCccc
Confidence 667888888877543321 11256999999999999999999999999999643
No 56
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=79.85 E-value=57 Score=38.34 Aligned_cols=40 Identities=13% Similarity=0.276 Sum_probs=21.5
Q ss_pred cccCCCCCCCCCccceeeccccccCCCCCCcccccccccchhhhccCC
Q 002026 86 SVINSNPSVPPGVSSFTYSASQTVVGYSPNQQFQPNMNKLEAVEDAGL 133 (978)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (978)
++-|...|.++-+.+--.+ ..--..+++.-++..+++.++
T Consensus 128 ~vkna~~v~~~diplpg~~--------~~s~~~sts~~g~s~~A~s~~ 167 (487)
T KOG4672|consen 128 PVKNAQGVPPPDIPLPGFN--------DKSNGYSSSCQGLSVLAQSAR 167 (487)
T ss_pred hccccccCCCccCcCcCcC--------Cccccccccccccchhhhhhh
Confidence 4667777776633322222 222345667777777775443
No 57
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=79.80 E-value=21 Score=39.61 Aligned_cols=8 Identities=0% Similarity=-0.305 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 002026 264 RPWLPFLP 271 (978)
Q Consensus 264 ~~~~p~~~ 271 (978)
-++|.|..
T Consensus 265 ~~~P~~~~ 272 (279)
T PF07271_consen 265 TSRPGMTM 272 (279)
T ss_pred CCCCCCCC
Confidence 34444433
No 58
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=78.57 E-value=3.4 Score=50.75 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=59.9
Q ss_pred cccccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcc--cccCCCCCcEEEEcCCCceEEEeC
Q 002026 349 GASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPIS--MEHLTGTDWALVTTNDGKKYYYNS 426 (978)
Q Consensus 349 ~~a~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~--~~~l~~~~W~e~~t~dGr~YyyN~ 426 (978)
++-...++..|...-+..|-+||.++.|+.++|-+|.-.+... .|.. ..-+| .+|...-+.-=..|||.+
T Consensus 217 e~~~gplp~nwemayte~gevyfiDhntkttswLdprl~kkaK-------~~eeckd~elP-ygWeki~dpiYg~yyvdH 288 (984)
T KOG3209|consen 217 EDNLGPLPHNWEMAYTEQGEVYFIDHNTKTTSWLDPRLTKKAK-------PPEECKDQELP-YGWEKIEDPIYGTYYVDH 288 (984)
T ss_pred ccccCCCCccceEeEeecCeeEeeecccccceecChhhhcccC-------Chhhccccccc-ccccccCCccceeEEecc
Confidence 4455568889999999999999999999999999998322111 0000 01133 679887665345999999
Q ss_pred CCCeeeccCChh
Q 002026 427 KMKVSSWQIPSE 438 (978)
Q Consensus 427 ~T~~S~We~P~e 438 (978)
....|+++-|-.
T Consensus 289 iN~~sq~enpvl 300 (984)
T KOG3209|consen 289 INRKSQYENPVL 300 (984)
T ss_pred cchhhhhccchh
Confidence 999999998865
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=76.85 E-value=1.1e+02 Score=38.66 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=5.4
Q ss_pred CChhHHHhh
Q 002026 833 ASWTESRPK 841 (978)
Q Consensus 833 ssW~Eik~~ 841 (978)
..|+-++..
T Consensus 411 lewErar~q 419 (1118)
T KOG1029|consen 411 LEWERARRQ 419 (1118)
T ss_pred HHHHHHHHH
Confidence 467766555
No 60
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=75.55 E-value=14 Score=43.14 Aligned_cols=27 Identities=22% Similarity=0.122 Sum_probs=12.8
Q ss_pred ccCCCCCCCCCCCCCCCccccccCccccC
Q 002026 130 DAGLGSSTSTNSQPVQASVRTFSDSTVAT 158 (978)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 158 (978)
+++..+++.+ +.++||++.+-+|+.+.
T Consensus 296 ~~sn~sk~a~--P~~~aP~~~~~ps~~~~ 322 (487)
T KOG4672|consen 296 QNSNLSKTAI--PEPDAPLQPIHPSTFAG 322 (487)
T ss_pred cccccccccC--CCCCCCcccCCcccccc
Confidence 3444444433 34455666555555443
No 61
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=75.17 E-value=1.5e+02 Score=33.87 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=11.2
Q ss_pred CcccCcCCCCCCCCCC
Q 002026 231 SAIQHQIYPTYPSLPP 246 (978)
Q Consensus 231 ~~~~~~~~p~~p~~p~ 246 (978)
+-.||..+|+|+.-+.
T Consensus 283 ~ep~q~~~p~y~~~~~ 298 (389)
T KOG2932|consen 283 GEPQQFGFPSYPTTES 298 (389)
T ss_pred CCCCCCCCCcCCcccc
Confidence 4567777888887654
No 62
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=73.38 E-value=49 Score=41.23 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=16.6
Q ss_pred ccCCcccCCccccccCCCCCCccC
Q 002026 62 ATGGVIPQSSFSFQNSEGSGHSAS 85 (978)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~ 85 (978)
..-|.++|++-.-+.-+|+||+-+
T Consensus 148 p~s~~v~q~~srr~s~~Gg~~~f~ 171 (1034)
T KOG0608|consen 148 PSSGAVSQSVSRRTSNEGGGHSFR 171 (1034)
T ss_pred CCCcccCCCccccccCCCCCCccc
Confidence 345667777655566788888876
No 63
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=72.99 E-value=11 Score=46.89 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=17.6
Q ss_pred CCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHHHHHH
Q 002026 830 DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHIKTLY 872 (978)
Q Consensus 830 ~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI~~L~ 872 (978)
+....++++...+-+.|. ..++.--..+|.-++..++
T Consensus 691 ~A~~af~~~~~y~Gespk------~tppt~ff~~f~~F~~~~k 727 (830)
T KOG1923|consen 691 DAAEAFEDVVEYFGESPK------TTPPTVFFQLFVRFVRAYK 727 (830)
T ss_pred HHHHHHHhHhHhhCCCCC------CCCCCccHHHHHHHHHHHH
Confidence 334445555555554442 1223333456666666554
No 64
>KOG1960 consensus Predicted RNA-binding protein, contains KH domains [RNA processing and modification]
Probab=72.78 E-value=39 Score=39.47 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=14.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 002026 260 QMGVRPWLPFLPYPAAYPSPFPLPAHGMP 288 (978)
Q Consensus 260 ~~~~~~~~p~~~y~~~~~g~~~~p~~g~~ 288 (978)
.|-||+-+|-+--+-+.+..-.+|.-||+
T Consensus 443 ~~~~~~~~p~~~s~~~~~~ss~~~~~g~~ 471 (531)
T KOG1960|consen 443 GMEAMAMPPGVTSSIAVPTTSSMPLQGMP 471 (531)
T ss_pred chhhhccCCceeecccccccccCcccCCC
Confidence 35555555554444333333346666665
No 65
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=71.78 E-value=90 Score=34.94 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=4.2
Q ss_pred CCCCCCCCCc
Q 002026 138 STNSQPVQAS 147 (978)
Q Consensus 138 ~~~~~~~~~~ 147 (978)
-.|-+.+.+|
T Consensus 135 e~~~~A~~~p 144 (279)
T PF07271_consen 135 EANAQAPEAP 144 (279)
T ss_pred hhhccccccc
Confidence 3344444444
No 66
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=71.05 E-value=4.3 Score=47.43 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=31.3
Q ss_pred ccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCC
Q 002026 352 VNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGF 387 (978)
Q Consensus 352 ~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l 387 (978)
...-...|.+|.-.+|-.||||.+|.++.|+++.+.
T Consensus 448 fG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI 483 (510)
T KOG0144|consen 448 FGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAI 483 (510)
T ss_pred ccceeEEEEEEecccCHhhhcCcccccchhhhHHHH
Confidence 344556799999999999999999999999999764
No 67
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=70.50 E-value=78 Score=41.99 Aligned_cols=9 Identities=22% Similarity=0.106 Sum_probs=3.8
Q ss_pred CCCCCCCCC
Q 002026 211 YSSAGLRPS 219 (978)
Q Consensus 211 ~~~~~~~p~ 219 (978)
.|-.++|+.
T Consensus 1840 ap~pplr~~ 1848 (1958)
T KOG0391|consen 1840 APFPPLRQQ 1848 (1958)
T ss_pred CCCCccccc
Confidence 333444444
No 68
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=69.83 E-value=58 Score=40.30 Aligned_cols=79 Identities=15% Similarity=-0.036 Sum_probs=43.2
Q ss_pred CCCCCCCCCCcccCCCCCCCc--cCCCCCCCCCCCCCCCCCCCCC--CC---CcccCcCCCCCCCCCCCCCCCCCCCCCC
Q 002026 186 TPQTQAPPGLLTLRTKDTSSA--FGDFYSSAGLRPSVPTPSAPSN--SG---SAIQHQIYPTYPSLPPIGVSPQGPLLRP 258 (978)
Q Consensus 186 ~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~p~~~~~~~--~~---~~~~~~~~p~~p~~p~~~~~~q~~~~~p 258 (978)
+-|.||.++..-...+-.|.. ..+-+-+..+|-.||.+.+.+. |. +..--||-++| ++=+.|
T Consensus 407 ~Gggpgg~t~~ag~~~~~~~l~r~~nv~~~s~prgs~~~~~H~s~~~pr~r~r~~~yqm~~P~-----------~~~~pP 475 (861)
T KOG3161|consen 407 TGGGPGGPTVPAGVAPCVPRLVRSNNVPESSLPRGSMPYADHYSTFSPRDRMRSSPYQMPPPQ-----------PYGPPP 475 (861)
T ss_pred CCCCCCCCCCcCCccCcchhhhhccCCCcccCCCCCCCcccccCccCcccchhcCCCCCCCCC-----------cCCCCC
Confidence 444466655332222333221 1233455677888898888443 11 12222333334 444448
Q ss_pred CCCCCCCCCCCCCCCCC
Q 002026 259 PQMGVRPWLPFLPYPAA 275 (978)
Q Consensus 259 p~~~~~~~~p~~~y~~~ 275 (978)
|-+.|+.+|||.++.+.
T Consensus 476 ~Vpsg~~~pp~~~~~~~ 492 (861)
T KOG3161|consen 476 PVPSGMYAPPYDSRRIW 492 (861)
T ss_pred CCCccccCCCcccccCC
Confidence 88999999999998543
No 69
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=69.09 E-value=1.1e+02 Score=36.03 Aligned_cols=37 Identities=24% Similarity=0.504 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhccCchhh
Q 002026 709 IRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYK 747 (978)
Q Consensus 709 ~Rk~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~ 747 (978)
+|+++++-|..|=.+..-| .++-|+.+ +.|..|.||.
T Consensus 184 LRre~V~lentlEQEqEal-vN~LwKrm-dkLe~ekr~L 220 (552)
T KOG2129|consen 184 LRREAVQLENTLEQEQEAL-VNSLWKRM-DKLEQEKRYL 220 (552)
T ss_pred HHHHHHHHhhHHHHHHHHH-HHHHHHHH-HHHHHHHHHH
Confidence 3455555555544443111 34556555 3344555553
No 70
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=69.05 E-value=3.3e+02 Score=35.08 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=17.7
Q ss_pred hcccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 611 KAIQSQSARRALFERYVKTRAEEERKEKRAAQKAAIEGFKQLL 653 (978)
Q Consensus 611 ~aL~s~~ERKqlFeeYi~er~keEreEkr~k~k~Ake~F~~LL 653 (978)
+.|.-+.-++..-++..++++ |.+++-+.+.+.++.|..-+
T Consensus 660 e~lD~d~i~~~q~eel~Ke~k--Elq~rL~~q~KkiDh~ERA~ 700 (988)
T KOG2072|consen 660 EKLDADQIKARQIEELEKERK--ELQSRLQYQEKKIDHLERAK 700 (988)
T ss_pred hhcCHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhHHHHHH
Confidence 334333344444444444433 22333333445556665544
No 71
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=68.93 E-value=2.2e+02 Score=32.66 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=3.5
Q ss_pred ccccccc
Q 002026 117 QFQPNMN 123 (978)
Q Consensus 117 ~~~~~~~ 123 (978)
.||--||
T Consensus 162 DlqAHIn 168 (389)
T KOG2932|consen 162 DLQAHIN 168 (389)
T ss_pred HHHHHhh
Confidence 4555554
No 72
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=67.42 E-value=8.1 Score=47.70 Aligned_cols=85 Identities=18% Similarity=0.151 Sum_probs=54.9
Q ss_pred CCCCCceEEEcC-CCCeeeecCCCCceeccC-CCCCCCCCCCCCCCCCCc--ccccCCCCCcEEEE-cCCCceEEEeCCC
Q 002026 354 EQLDAWTAHKTD-TGIVYYYNAVTGESTYEK-PAGFKGEPDKVPVQPTPI--SMEHLTGTDWALVT-TNDGKKYYYNSKM 428 (978)
Q Consensus 354 ~~~~~W~e~~~~-dGr~YYyN~~T~~StWek-P~~l~~~~e~~~~qp~P~--~~~~l~~~~W~e~~-t~dGr~YyyN~~T 428 (978)
.....|..+.+. .|+.|||+..|+.++|+- +..........+..-.+. +......+.|..++ +..+..+|+|..+
T Consensus 268 l~~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (650)
T KOG1450|consen 268 LKSTVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSH 347 (650)
T ss_pred CCCcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCC
Confidence 345569999876 899999999999999995 211111111001111111 11112236788876 5688999999999
Q ss_pred CeeeccCChh
Q 002026 429 KVSSWQIPSE 438 (978)
Q Consensus 429 ~~S~We~P~e 438 (978)
+++.|...-.
T Consensus 348 net~~~d~~~ 357 (650)
T KOG1450|consen 348 NETSFEDWSS 357 (650)
T ss_pred CCccccchhh
Confidence 9999987654
No 73
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=67.33 E-value=57 Score=36.91 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=25.1
Q ss_pred HhhhcCCCCCCCChHHHHHHhccCchhhcCCcccHHHHHHHHHHHHHHH
Q 002026 720 MLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAA 768 (978)
Q Consensus 720 LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL~~~dRe~lFeeyI~eLe~~ 768 (978)
-|++.+.|+ ...|.++|.....+. |+++. ...+||.+++.+
T Consensus 108 klRd~gKID-kh~YR~LYrKAKGn~-FKNK~------~L~e~I~k~KaE 148 (357)
T PTZ00436 108 KYREEKKID-RHIYRELYVKAKGNV-FRNKR------NLMEHIHKVKNE 148 (357)
T ss_pred HHHhcCCCC-HHHHHHHHHHhcCCc-cCcHH------HHHHHHHHHHHH
Confidence 456666775 467788877766554 44432 236788877654
No 74
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=66.16 E-value=65 Score=41.21 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=9.6
Q ss_pred CCcccccccccchhhh
Q 002026 114 PNQQFQPNMNKLEAVE 129 (978)
Q Consensus 114 ~~~~~~~~~~~~~~~~ 129 (978)
.|---|...++.+++-
T Consensus 748 ~~kp~~~~~l~s~a~k 763 (1114)
T KOG3753|consen 748 PNKPKQQLTLGSKAIK 763 (1114)
T ss_pred CCCccccccccccCcc
Confidence 3555566666766664
No 75
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=65.19 E-value=79 Score=39.52 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=14.2
Q ss_pred cccccccccchhhhccCCCCC
Q 002026 116 QQFQPNMNKLEAVEDAGLGSS 136 (978)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~ 136 (978)
|.+|++.-|++++......++
T Consensus 167 ~~~~~~~~~lk~~~gg~a~p~ 187 (944)
T KOG4307|consen 167 QNHQENSVKLKDPFGGDAGPY 187 (944)
T ss_pred hhccCCceeecccCCCCCCCC
Confidence 567777788888775555443
No 76
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=63.04 E-value=3.8 Score=44.12 Aligned_cols=34 Identities=21% Similarity=0.374 Sum_probs=31.3
Q ss_pred cCCCCCceEEEcCCCCeeeecCCCCceeccCCCC
Q 002026 353 NEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAG 386 (978)
Q Consensus 353 ~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~ 386 (978)
+.+++||....++.--+||||..+|+++++.|..
T Consensus 127 EgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~ 160 (271)
T KOG1891|consen 127 EGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCI 160 (271)
T ss_pred ccCCcchhhccccccceeeeecccchhhhcCCCC
Confidence 5688999999999988999999999999999984
No 77
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=62.80 E-value=4.5e+02 Score=34.05 Aligned_cols=10 Identities=40% Similarity=0.624 Sum_probs=6.0
Q ss_pred HHHHHHHHHH
Q 002026 618 ARRALFERYV 627 (978)
Q Consensus 618 ERKqlFeeYi 627 (978)
.|+.+.+++.
T Consensus 568 aRk~liE~rK 577 (988)
T KOG2072|consen 568 ARKSLIEKRK 577 (988)
T ss_pred HHHHHHHHHH
Confidence 5666666554
No 78
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=61.83 E-value=3 Score=48.70 Aligned_cols=33 Identities=27% Similarity=0.625 Sum_probs=21.4
Q ss_pred CcE-----EEEcCCCceEEEeCCCCeeeccCChhHHHh
Q 002026 410 DWA-----LVTTNDGKKYYYNSKMKVSSWQIPSEVTEL 442 (978)
Q Consensus 410 ~W~-----e~~t~dGr~YyyN~~T~~S~We~P~el~~l 442 (978)
+|. ...+...|.|+||..-|+|||++|+.+..+
T Consensus 369 PW~d~~g~~~~~~~eKLYHyN~~GGtSTW~LP~~w~~~ 406 (425)
T PF12905_consen 369 PWNDANGKKLDDDEEKLYHYNPDGGTSTWTLPDSWAGL 406 (425)
T ss_dssp EE--TTS-B--GGG-EEEEEESS-CEEEEE--HHHCT-
T ss_pred ecccccCcccCCCcceeEEEcCCCCeeeeeCCccccCC
Confidence 577 334456799999999999999999998763
No 79
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.71 E-value=22 Score=42.28 Aligned_cols=20 Identities=50% Similarity=0.800 Sum_probs=12.9
Q ss_pred CCCCCCcccCcCCCCC-CCCC
Q 002026 226 PSNSGSAIQHQIYPTY-PSLP 245 (978)
Q Consensus 226 ~~~~~~~~~~~~~p~~-p~~p 245 (978)
+.+++...|+|-||+| |+.+
T Consensus 407 ~~~s~p~pq~qNyppp~p~f~ 427 (483)
T KOG2236|consen 407 SDNSGPSPQQQNYPPPSPSFP 427 (483)
T ss_pred cCCCCCCcccCCCCCCCCCCC
Confidence 3445667888888876 4444
No 80
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=60.50 E-value=2.6e+02 Score=37.43 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=6.3
Q ss_pred cCcCCCCCCCCCC
Q 002026 234 QHQIYPTYPSLPP 246 (978)
Q Consensus 234 ~~~~~p~~p~~p~ 246 (978)
--+.-|+|.+.|+
T Consensus 1571 ysptspsys~~~~ 1583 (1605)
T KOG0260|consen 1571 YSPTSPSYSTSPS 1583 (1605)
T ss_pred CCCCCCCccCCCC
Confidence 3334455555554
No 81
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=56.17 E-value=2.4e+02 Score=35.65 Aligned_cols=39 Identities=26% Similarity=0.072 Sum_probs=20.8
Q ss_pred CCCCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCCCC
Q 002026 140 NSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTP 180 (978)
Q Consensus 140 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (978)
++|+..+-..++|+++-.++++.+-.+ +|--+.-+|-..
T Consensus 135 s~q~~aaa~~~tSp~s~~v~q~~srr~--s~~Gg~~~f~ay 173 (1034)
T KOG0608|consen 135 SEQSNAAATTSTSPSSGAVSQSVSRRT--SNEGGGHSFRAY 173 (1034)
T ss_pred cHhhhhhhhccCCCCCcccCCCccccc--cCCCCCCccccc
Confidence 344444443456666666666655444 555555555533
No 82
>KOG3546 consensus Collagens (type XV) [Extracellular structures]
Probab=55.93 E-value=39 Score=41.47 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=6.4
Q ss_pred cccccccchhh
Q 002026 118 FQPNMNKLEAV 128 (978)
Q Consensus 118 ~~~~~~~~~~~ 128 (978)
.-.-||.|+--
T Consensus 714 grpg~nglkg~ 724 (1167)
T KOG3546|consen 714 GRPGMNGLKGE 724 (1167)
T ss_pred CCCCccccccc
Confidence 34567776654
No 83
>PF06346 Drf_FH1: Formin Homology Region 1; InterPro: IPR009408 This domain is found in some of the Diaphanous related formins (Drfs) []. It consists of low complexity repeats of around 12 residues.
Probab=55.32 E-value=1.5e+02 Score=30.28 Aligned_cols=8 Identities=63% Similarity=1.331 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 002026 283 PAHGMPNP 290 (978)
Q Consensus 283 p~~g~~~~ 290 (978)
+.+||+.+
T Consensus 139 ~~~g~ppP 146 (160)
T PF06346_consen 139 PGMGMPPP 146 (160)
T ss_pred ccCCCCCC
Confidence 34444433
No 84
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=54.63 E-value=78 Score=41.79 Aligned_cols=12 Identities=8% Similarity=0.207 Sum_probs=4.7
Q ss_pred ceEEEcCCCCee
Q 002026 359 WTAHKTDTGIVY 370 (978)
Q Consensus 359 W~e~~~~dGr~Y 370 (978)
|......+|..|
T Consensus 30 YLAkdk~tg~~v 41 (1021)
T PTZ00266 30 FLVKHKRTQEFF 41 (1021)
T ss_pred EEEEECCCCeEE
Confidence 443333344333
No 85
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.89 E-value=2.1e+02 Score=34.43 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHH--HHHHHHHHHHHHHhhh
Q 002026 685 KDRELLLNERVLPLKRAAEEKAQ--AIRAAAASSFKSMLRE 723 (978)
Q Consensus 685 ~ERE~LF~EyI~~LKk~eeEk~r--~~Rk~a~~~Fk~LL~e 723 (978)
+....+|+++...+++.+.+-++ +.-+...++.+.||..
T Consensus 26 ~TkD~~FE~~~~~f~~~e~e~~kLqkd~k~y~~av~am~~a 66 (460)
T KOG3771|consen 26 ETKDEQFEQEERNFNKQEAEGKRLQKDLKNYLDAVRAMLAA 66 (460)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556799998888777654433 2224455666666643
No 86
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=53.41 E-value=3.4e+02 Score=30.84 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=5.3
Q ss_pred CCCCCCCCCCC
Q 002026 175 PSFSTPPGLFV 185 (978)
Q Consensus 175 ~~~~~~p~~~~ 185 (978)
|.-+.+||.|.
T Consensus 112 pgG~~~PGFFq 122 (354)
T KOG4594|consen 112 PGGPVPPGFFQ 122 (354)
T ss_pred CCCCCCCcccc
Confidence 33345555554
No 87
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=53.15 E-value=73 Score=42.11 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=8.5
Q ss_pred CCCCCCCCCCCCCC
Q 002026 255 LLRPPQMGVRPWLP 268 (978)
Q Consensus 255 ~~~pp~~~~~~~~p 268 (978)
|++|||.+-.++.|
T Consensus 167 pg~pP~~s~~~~Sp 180 (1639)
T KOG0905|consen 167 PGVPPQHSRRPQSP 180 (1639)
T ss_pred CCCCCCCCCCCCCC
Confidence 44577777655554
No 88
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.32 E-value=51 Score=39.34 Aligned_cols=14 Identities=36% Similarity=0.434 Sum_probs=6.8
Q ss_pred cccccCCCCCCccc
Q 002026 105 ASQTVVGYSPNQQF 118 (978)
Q Consensus 105 ~~~~~~~~~~~~~~ 118 (978)
.+|-..++..|+-+
T Consensus 370 ~~~~y~~r~~~~gf 383 (483)
T KOG2236|consen 370 APQMYRGRDQNRGF 383 (483)
T ss_pred cccccCCcccccCC
Confidence 34555555555443
No 89
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=49.88 E-value=3.6e+02 Score=36.13 Aligned_cols=149 Identities=14% Similarity=0.198 Sum_probs=69.5
Q ss_pred hHhhhcccccCchhhc-----ccChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhcCCCCCc
Q 002026 597 WEKELPKIVFDPRFKA-----IQSQSARRALFERYVKTRAEEERKEKRA-------AQKAAIEGFKQLLEEVSEDIDHST 664 (978)
Q Consensus 597 Wekal~kI~~DPRY~a-----L~s~~ERKqlFeeYi~er~keEreEkr~-------k~k~Ake~F~~LLee~~~~I~~~T 664 (978)
|+.++..|...+-|.. ..+...++.+++.|-..+.++.+-+..+ +.++|.++|+. .-
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~-----------~~ 979 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKE-----------CG 979 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHH-----------hc
Confidence 4455555555666653 2355678888888877766554432222 12233333221 23
Q ss_pred cHHHHHHHhcCCchhccCCHHHHHHHHHHHHHHhhHHHH--HHHHHHH---HHHHHHHHHHhhhcCCCCCCCChHHHHHH
Q 002026 665 DYQTFKKKWGSDPRFEALDRKDRELLLNERVLPLKRAAE--EKAQAIR---AAAASSFKSMLREKGDITLSSRWSKVKDI 739 (978)
Q Consensus 665 ~W~e~~kk~~~DpRfkaLd~~ERE~LF~EyI~~LKk~ee--Ek~r~~R---k~a~~~Fk~LL~e~~~It~~T~Wsdvk~~ 739 (978)
.|+++...... ...++++-..+-++-+..|..+++ |..+-.. ....++|..|++ ...|.++.+.
T Consensus 980 dWr~~l~~a~q----l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~k-------a~~~~eAlrv 1048 (1265)
T KOG1920|consen 980 DWREALSLAAQ----LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCK-------AKEWEEALRV 1048 (1265)
T ss_pred cHHHHHHHHHh----hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhh-------HhHHHHHHHH
Confidence 57777654321 012233333333444444433221 1111110 112233444443 2478888765
Q ss_pred h---ccCchhhcCCcccHHHHHHHHHHHHHH
Q 002026 740 L---RDDPRYKSVRHEDREVIFNEYVRELKA 767 (978)
Q Consensus 740 L---~~DpRy~aL~~~dRe~lFeeyI~eLe~ 767 (978)
. ..|.++.-+-....++.|.++...|+.
T Consensus 1049 a~~~~~~d~iee~l~~al~e~~~~~~~~L~~ 1079 (1265)
T KOG1920|consen 1049 ASKAKRDDIIEEVLKPALLEAFGEVLEFLED 1079 (1265)
T ss_pred HHhcccchHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4 234555544444555666666665543
No 90
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.71 E-value=5.1e+02 Score=31.59 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHhhcCC
Q 002026 815 EAVTSFQALLVETIKDP 831 (978)
Q Consensus 815 Ear~~F~aLL~E~v~~p 831 (978)
+.+..|..||..+- .|
T Consensus 415 ~Lr~Kldtll~~ln-~P 430 (508)
T KOG3091|consen 415 ELRAKLDTLLAQLN-AP 430 (508)
T ss_pred HHHHHHHHHHHHhc-Ch
Confidence 44556667776543 44
No 91
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.21 E-value=7.9e+02 Score=32.50 Aligned_cols=62 Identities=21% Similarity=0.169 Sum_probs=26.9
Q ss_pred CCccccccccccCCcccCCCCCCCcccCCCCCCcccceeeccCCcccCCccc---cccCCCCCCccCcccCCC
Q 002026 22 GKPVGGSLVASSTPIAPTSNGSDTATNDSISGPSQAKSVTATGGVIPQSSFS---FQNSEGSGHSASSVINSN 91 (978)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 91 (978)
|.+.|-..|+..+.++-. ++++.|.+..-.-...-|-|++.+|. .--.-|.||++-.+...+
T Consensus 853 ~~~d~t~~v~~~s~~~~~--------~~~~a~~~~~~~~l~~~g~v~~~~~~~~~~w~~~~~~~~al~~~~~~ 917 (1080)
T KOG0566|consen 853 GPPDGTIKVSLLSLDAEN--------KFSDAGKTELITKLPELGKVPLPRSDQGKMWITFGLGESALAALSLD 917 (1080)
T ss_pred CCCCCceeeeeecccccc--------CCCcccccccccccccCCcccCCcccCCceEEecCCcchhhcccCcc
Confidence 455555555554433211 12444444333322333344444432 222456777775444443
No 92
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=47.02 E-value=3.3e+02 Score=32.78 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhcCCCCC
Q 002026 577 ECIIKFKEMLKERGVAPF 594 (978)
Q Consensus 577 Eak~aFkeLLkE~~V~~~ 594 (978)
++.+..++|-+++||+++
T Consensus 86 ~~qqe~~~LyKe~ginP~ 103 (429)
T PRK00247 86 ELQQKQKDLNKEYGYNPL 103 (429)
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 344455666666666653
No 93
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=45.08 E-value=2.4e+02 Score=35.58 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=17.8
Q ss_pred CCCCCCCCCccceeeccc---cccCCCCCCccccccccc
Q 002026 89 NSNPSVPPGVSSFTYSAS---QTVVGYSPNQQFQPNMNK 124 (978)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 124 (978)
|-+..+|+.-. +|.=| +-.+|-++|=.+|-.||.
T Consensus 92 ~a~~~~Pv~~a--k~~gP~p~pP~~g~~~~~n~qt~v~~ 128 (944)
T KOG4307|consen 92 NATYTSPVYKA--KYVGPVPSPPTPGQEQNWNSQTAVNP 128 (944)
T ss_pred cCCccCCcccc--ccCCCCCCCCCccccccccccccccc
Confidence 44555555432 23333 344455677777776654
No 94
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=44.67 E-value=5e+02 Score=32.82 Aligned_cols=10 Identities=10% Similarity=-0.174 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 002026 686 DRELLLNERV 695 (978)
Q Consensus 686 ERE~LF~EyI 695 (978)
.+.+-|++-+
T Consensus 247 l~~KQ~rk~m 256 (811)
T KOG4364|consen 247 LLLKQLRKNM 256 (811)
T ss_pred HHHHHHHHhH
Confidence 3333444333
No 95
>PHA03378 EBNA-3B; Provisional
Probab=43.50 E-value=5e+02 Score=32.90 Aligned_cols=7 Identities=43% Similarity=0.558 Sum_probs=3.1
Q ss_pred CCCcccc
Q 002026 113 SPNQQFQ 119 (978)
Q Consensus 113 ~~~~~~~ 119 (978)
++.|--|
T Consensus 650 tp~~~p~ 656 (991)
T PHA03378 650 TPHQPPQ 656 (991)
T ss_pred CCCCCCc
Confidence 4444433
No 96
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=43.47 E-value=20 Score=42.75 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=31.8
Q ss_pred cCCCCCcEEEEcCCCceEEEeCCCCeeeccCChhHH
Q 002026 405 HLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSEVT 440 (978)
Q Consensus 405 ~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~P~el~ 440 (978)
+|| .+|..++-..|-..|||..|+..+|.+|=-|-
T Consensus 154 pLP-eGW~~i~HnSGmPvylHr~tRVvt~SrPYflG 188 (650)
T KOG4334|consen 154 PLP-EGWTVISHNSGMPVYLHRFTRVVTHSRPYFLG 188 (650)
T ss_pred cCC-CceEEEeecCCCceEEeeeeeeEeccCceeec
Confidence 456 89999999999999999999999999998763
No 97
>PF12297 EVC2_like: Ellis van Creveld protein 2 like protein; InterPro: IPR022076 This family of proteins is found in eukaryotes. Proteins in this family are typically between 571 and 1310 amino acids in length. There are two conserved sequence motifs: LPA and ELH. EVC2 is implicated in Ellis van Creveld chondrodysplastic dwarfism in humans. Mutations in this protein can give rise to this congenital condition. LIMBIN is a protein which shares around 80% sequence homology with EVC2 and it is implicated in a similar condition in bovine chondrodysplastic dwarfism.
Probab=43.42 E-value=3.8e+02 Score=32.06 Aligned_cols=149 Identities=16% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCC
Q 002026 755 EVIFNEYVRELKAAEEEAEREAKARREEQEKLKERER-EMRKRKEREEQEMERVRLKVRRKEAVTSFQALLVETIKDPQA 833 (978)
Q Consensus 755 e~lFeeyI~eLe~~e~e~ere~k~kreee~kLrEREr-evrkrKeReeke~eR~R~k~rr~Ear~~F~aLL~E~v~~p~s 833 (978)
..+|..-...|+.+-.++....-.....+=.++-|++ +...+|+..+.+...+..++-.++....+..||..+. +.
T Consensus 197 ~~~~kkq~l~le~~l~eEy~rkm~aL~~~c~lE~r~k~e~~~qre~a~~~eaeel~k~~~e~~a~e~~~LL~~lH---~l 273 (429)
T PF12297_consen 197 SSVFKKQFLGLEKRLQEEYDRKMVALTAECNLETRKKMEAQHQREMAEMEEAEELLKHASERSAAECSSLLRKLH---GL 273 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCccHhhHHHHHHHHHHHH---hh
Q ss_pred ChhHHHhhh--hcCcccccccCCCCh---HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhccCCccccC
Q 002026 834 SWTESRPKL--EKDPQGRATNADLDS---SDREKLFREHIKTLYER---CAHDFRGLLAEVITAEAAAQETEDGKTVLNS 905 (978)
Q Consensus 834 sW~Eik~~L--~kDpr~ra~~~~Ls~---~dre~LF~dhI~~L~ek---~r~dFr~LL~E~~~~~~~~~~~~d~~t~~~s 905 (978)
.=+..+..| +.++.|..+...+.. .+...||-+.|+.+..+ ..+.-+.||.++.+.. +.
T Consensus 274 eqe~L~~~L~l~qEE~~aKa~Rqla~~~R~eLh~if~~qi~~ai~~GeL~~e~Ak~Ll~~y~~~Q-------------~~ 340 (429)
T PF12297_consen 274 EQEHLRRSLLLQQEEDFAKARRQLAVFRRVELHEIFFEQIKSAIFKGELKPEAAKSLLQDYSKIQ-------------EN 340 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-------------HH
Q ss_pred HHHHHHhcCCCccc
Q 002026 906 WSTAKRVLKPEPRY 919 (978)
Q Consensus 906 W~e~kk~Lk~D~RY 919 (978)
.+++-+.+....||
T Consensus 341 vEelMD~~qA~kRy 354 (429)
T PF12297_consen 341 VEELMDFFQANKRY 354 (429)
T ss_pred HHHHHHHHHHhhHh
No 98
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=43.13 E-value=30 Score=40.06 Aligned_cols=65 Identities=22% Similarity=0.360 Sum_probs=46.6
Q ss_pred EEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeeccCChh
Q 002026 362 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPSE 438 (978)
Q Consensus 362 ~~~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~P~e 438 (978)
..+.+|.+|-+|..|++..|....... ....|+ + ..+-.-+.+.+|.+|-+|..||+..|..+..
T Consensus 125 v~~~~g~l~ald~~tG~~~W~~~~~~~-------~~ssP~----v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 125 IGSEKGQVYALNAEDGEVAWQTKVAGE-------ALSRPV----V-SDGLVLVHTSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred EEcCCCEEEEEECCCCCCcccccCCCc-------eecCCE----E-ECCEEEEECCCCEEEEEEccCCCEeeeecCC
Confidence 345689999999999999999875321 011221 1 1333445678999999999999999998653
No 99
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.30 E-value=8.3e+02 Score=31.07 Aligned_cols=80 Identities=16% Similarity=0.211 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhcc-CchhhcCCcccHHHHHHHHHHH
Q 002026 686 DRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRD-DPRYKSVRHEDREVIFNEYVRE 764 (978)
Q Consensus 686 ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~-DpRy~aL~~~dRe~lFeeyI~e 764 (978)
++..-|+.+|..|+++...+.++. ...+.....|...+ .++....-.++...|.+ +.++...-..++++-++.-|..
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv-~~~~~~I~~l~~~L-g~~~~~~vt~~~~sL~~~~~~~~~~is~etl~~L~~~v~~ 237 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKV-LELKEEIKSLCSVL-GLDFSMTVTDVEPSLVDHDGEQSRSISDETLDRLDKMVKK 237 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCcccchhhhhhhhhhccCcccccCCHHHHHHHHHHHHH
Confidence 556678889888877654333222 23344444444444 46666666777776654 4445433344555555666666
Q ss_pred HHH
Q 002026 765 LKA 767 (978)
Q Consensus 765 Le~ 767 (978)
|+.
T Consensus 238 l~~ 240 (660)
T KOG4302|consen 238 LKE 240 (660)
T ss_pred HHH
Confidence 643
No 100
>PF15449 Retinal: Retinal protein
Probab=42.05 E-value=3.4e+02 Score=36.02 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=8.8
Q ss_pred CCCCCCccccccCccc
Q 002026 141 SQPVQASVRTFSDSTV 156 (978)
Q Consensus 141 ~~~~~~~~~~~~~s~~ 156 (978)
+|++.++..++--|..
T Consensus 997 p~s~easr~~~Ersp~ 1012 (1287)
T PF15449_consen 997 PHSPEASRQSQERSPP 1012 (1287)
T ss_pred CCCCcccccccccCCc
Confidence 4667677664444433
No 101
>PF15402 Spc7_N: N-terminus of kinetochore NMS complex subunit Spc7
Probab=41.34 E-value=9.9e+02 Score=31.65 Aligned_cols=52 Identities=31% Similarity=0.451 Sum_probs=27.3
Q ss_pred ccccccccccCCcccCCCCCCCcccCCCCCCcccceeeccCCcccCCccccccCCCC
Q 002026 24 PVGGSLVASSTPIAPTSNGSDTATNDSISGPSQAKSVTATGGVIPQSSFSFQNSEGS 80 (978)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (978)
.||| +..+..+...+..+++...|.-.+ -.--+|.|||+.+....-......
T Consensus 482 aVGG-I~~~~~~~~~~~~~~~~~~dEDMS----MEFTsaVGGVL~~~~~~~~~~~~~ 533 (927)
T PF15402_consen 482 AVGG-IKQSSSPDKDTDGDSDIDEDEDMS----MEFTSAVGGVLSKNAPSSATAERR 533 (927)
T ss_pred cccC-cCCCCCCccccccccccccccccc----eeehhhhhhccccccccccccccc
Confidence 4554 344444554444444434444333 233467899998876654444333
No 102
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=40.89 E-value=4.3e+02 Score=27.37 Aligned_cols=18 Identities=22% Similarity=0.385 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHHHHH
Q 002026 856 DSSDREKLFREHIKTLYE 873 (978)
Q Consensus 856 s~~dre~LF~dhI~~L~e 873 (978)
+.++-.++.+++|++|..
T Consensus 155 ~~~~~~~li~~~i~~l~~ 172 (175)
T PRK14472 155 DADKQKKVVDSMIQDLST 172 (175)
T ss_pred CHHHHHHHHHHHHHHhhh
Confidence 445556788888888753
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.80 E-value=1.9e+02 Score=36.46 Aligned_cols=9 Identities=11% Similarity=0.353 Sum_probs=4.5
Q ss_pred CCCCceEEE
Q 002026 355 QLDAWTAHK 363 (978)
Q Consensus 355 ~~~~W~e~~ 363 (978)
++-.|.-+.
T Consensus 492 ~~~~~~~~~ 500 (624)
T PRK14959 492 GPRTWDGFL 500 (624)
T ss_pred CcccHHHHH
Confidence 344675443
No 104
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=40.53 E-value=3.2e+02 Score=27.60 Aligned_cols=48 Identities=19% Similarity=0.398 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccHHHHHHHhcCCchhccCC
Q 002026 620 RALFERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQTFKKKWGSDPRFEALD 683 (978)
Q Consensus 620 KqlFeeYi~er~keEreEkr~k~k~Ake~F~~LLee~~~~I~~~T~W~e~~kk~~~DpRfkaLd 683 (978)
.+||+.|-=++++.-.+++.. +.+--++|...|++... .++|.|.+..
T Consensus 34 EeL~~r~sPELrkr~~~~r~~-Rq~e~~~~~~~lKe~sk---------------SdkPIW~~~~ 81 (128)
T PF07960_consen 34 EELFKRYSPELRKRYLENREL-RQQEFDEFMKILKETSK---------------SDKPIWKTGK 81 (128)
T ss_pred HHHHHhcCHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhc---------------cCCCceeeCC
Confidence 678888876655544333222 22223567777776521 2578888654
No 105
>KOG3878 consensus Protein involved in maintenance of Golgi structure and ER-Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.10 E-value=1.6e+02 Score=33.89 Aligned_cols=14 Identities=21% Similarity=0.320 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhhc
Q 002026 711 AAAASSFKSMLREK 724 (978)
Q Consensus 711 k~a~~~Fk~LL~e~ 724 (978)
..++..|..||..+
T Consensus 104 e~AM~~FV~Lldr~ 117 (469)
T KOG3878|consen 104 EQAMEGFVDLLDRM 117 (469)
T ss_pred HHHHHHHHHHHHhc
Confidence 45789999999765
No 106
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=39.60 E-value=8.6e+02 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=19.3
Q ss_pred HHHHHHhhHHHHHHHHHHH--HHHHHHHHHHhhhc
Q 002026 692 NERVLPLKRAAEEKAQAIR--AAAASSFKSMLREK 724 (978)
Q Consensus 692 ~EyI~~LKk~eeEk~r~~R--k~a~~~Fk~LL~e~ 724 (978)
+.+|.+|.+.-++-.-.+| -.+...|.+-|.+.
T Consensus 33 nkfik~~ikdg~~li~a~knls~a~~kfa~tl~~f 67 (812)
T KOG1451|consen 33 NKFIKELIKDGKELISALKNLSSAVRKFAQTLQEF 67 (812)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666665555444444 24667777777764
No 107
>PF06102 DUF947: Domain of unknown function (DUF947); InterPro: IPR009292 This is a family of eukaryotic proteins with unknown function.
Probab=39.13 E-value=2.7e+02 Score=29.15 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=24.4
Q ss_pred HHhccCchhhcCCcccHHHHHH---HHHHHHHHHHH
Q 002026 738 DILRDDPRYKSVRHEDREVIFN---EYVRELKAAEE 770 (978)
Q Consensus 738 ~~L~~DpRy~aL~~~dRe~lFe---eyI~eLe~~e~ 770 (978)
.....||||..+.+.--.++|. .||+++...|.
T Consensus 30 k~~~rDPRFd~~~G~~~~~~f~k~Y~FL~d~r~~E~ 65 (168)
T PF06102_consen 30 KKKRRDPRFDSLSGEFNEDLFRKNYGFLDDYREKEI 65 (168)
T ss_pred CCCCCCCCcCccccccCHHHHHHhhhhHHHHHHHHH
Confidence 4467899999998765566776 57888766543
No 108
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=38.69 E-value=47 Score=38.00 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=43.4
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeeccCC
Q 002026 364 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIP 436 (978)
Q Consensus 364 ~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~P 436 (978)
+.+|.+|-||..|++..|........ ...| ....+..-+.+.+|.+|-+|..||+-.|...
T Consensus 72 ~~~g~v~a~d~~tG~~~W~~~~~~~~-------~~~p-----~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~ 132 (377)
T TIGR03300 72 DADGTVVALDAETGKRLWRVDLDERL-------SGGV-----GADGGLVFVGTEKGEVIALDAEDGKELWRAK 132 (377)
T ss_pred CCCCeEEEEEccCCcEeeeecCCCCc-------ccce-----EEcCCEEEEEcCCCEEEEEECCCCcEeeeec
Confidence 34799999999999999986543210 0112 1224555566789999999999999999764
No 109
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=37.82 E-value=40 Score=38.52 Aligned_cols=64 Identities=20% Similarity=0.315 Sum_probs=46.3
Q ss_pred EEcCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 002026 362 HKTDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 437 (978)
Q Consensus 362 ~~~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~P~ 437 (978)
..+.+|.+|-+|..|++-.|....... ....|+ -..+..-+.+.+|..|-+|..|++..|+...
T Consensus 110 v~~~~g~l~ald~~tG~~~W~~~~~~~-------~~~~p~-----v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~ 173 (377)
T TIGR03300 110 VGTEKGEVIALDAEDGKELWRAKLSSE-------VLSPPL-----VANGLVVVRTNDGRLTALDAATGERLWTYSR 173 (377)
T ss_pred EEcCCCEEEEEECCCCcEeeeeccCce-------eecCCE-----EECCEEEEECCCCeEEEEEcCCCceeeEEcc
Confidence 345689999999999999998764311 011121 1245556667899999999999999998643
No 110
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.53 E-value=5.1e+02 Score=29.36 Aligned_cols=17 Identities=12% Similarity=-0.021 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCCCCC
Q 002026 249 VSPQGPLLRPPQMGVRP 265 (978)
Q Consensus 249 ~~~q~~~~~pp~~~~~~ 265 (978)
+++++..-+=|.+-.++
T Consensus 210 p~~~~yiS~~~S~ns~~ 226 (338)
T KOG0917|consen 210 PYTGIYISHEPSPNSLP 226 (338)
T ss_pred CCCcceeecccCccccc
Confidence 44555555555555555
No 111
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=36.35 E-value=27 Score=41.74 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=36.5
Q ss_pred ccccCCCCCceEEEcCCCCeeeecCCCCceeccCCCCCCCC
Q 002026 350 ASVNEQLDAWTAHKTDTGIVYYYNAVTGESTYEKPAGFKGE 390 (978)
Q Consensus 350 ~a~~~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~~l~~~ 390 (978)
+-.+.++.||+...-..|-.-|||..|+.-||.||--+.+.
T Consensus 150 ~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYflGtG 190 (650)
T KOG4334|consen 150 DKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYFLGTG 190 (650)
T ss_pred CCCCcCCCceEEEeecCCCceEEeeeeeeEeccCceeeccc
Confidence 45678999999999999999999999999999999877543
No 112
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=35.86 E-value=1.9e+02 Score=36.24 Aligned_cols=11 Identities=27% Similarity=0.395 Sum_probs=4.3
Q ss_pred CCCCCCCCccc
Q 002026 964 GGRPPSSSRRN 974 (978)
Q Consensus 964 ~~~~~~~~~~~ 974 (978)
++--+.+++|.
T Consensus 464 sa~kpve~e~~ 474 (811)
T KOG4364|consen 464 SACKPVESERK 474 (811)
T ss_pred ccceeeccCCc
Confidence 33334444433
No 113
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=35.69 E-value=7.9e+02 Score=28.89 Aligned_cols=12 Identities=67% Similarity=0.963 Sum_probs=10.6
Q ss_pred cCCccCCccccc
Q 002026 17 NAPISGKPVGGS 28 (978)
Q Consensus 17 ~~~~~~~~~~~~ 28 (978)
.|||-||+||++
T Consensus 53 SAPivgk~vgs~ 64 (437)
T KOG4462|consen 53 SAPIVGKGVGSS 64 (437)
T ss_pred ccccccCccccc
Confidence 489999999987
No 114
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=35.02 E-value=34 Score=35.77 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=44.0
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeeccC
Q 002026 364 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQI 435 (978)
Q Consensus 364 ~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~ 435 (978)
+.+|.+|.||..|++-.|.....-.. ...+....+-.-+.+.+|+.|.+|..||+..|..
T Consensus 43 ~~~~~l~~~d~~tG~~~W~~~~~~~~------------~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~ 102 (238)
T PF13360_consen 43 SGDGNLYALDAKTGKVLWRFDLPGPI------------SGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSI 102 (238)
T ss_dssp ETTSEEEEEETTTSEEEEEEECSSCG------------GSGEEEETTEEEEEETTSEEEEEETTTSCEEEEE
T ss_pred cCCCEEEEEECCCCCEEEEeeccccc------------cceeeecccccccccceeeeEecccCCcceeeee
Confidence 58999999999999999987752110 0001122344556678899999999999999985
No 115
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=34.91 E-value=1.1e+02 Score=35.06 Aligned_cols=11 Identities=27% Similarity=0.283 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 002026 754 REVIFNEYVRE 764 (978)
Q Consensus 754 Re~lFeeyI~e 764 (978)
|..+-+++.+.
T Consensus 264 R~~~~~~~~K~ 274 (321)
T PF07946_consen 264 REEEEEKILKE 274 (321)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 116
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=34.01 E-value=1.1e+02 Score=31.82 Aligned_cols=10 Identities=50% Similarity=0.693 Sum_probs=4.1
Q ss_pred CCCCCCCCCC
Q 002026 253 GPLLRPPQMG 262 (978)
Q Consensus 253 ~~~~~pp~~~ 262 (978)
+.-.+||+++
T Consensus 146 ~y~~~pp~~~ 155 (179)
T PF13908_consen 146 GYQPPPPQPG 155 (179)
T ss_pred CCCcCCCCCC
Confidence 3333344444
No 117
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=33.53 E-value=1.4e+02 Score=35.15 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=6.6
Q ss_pred CCCCCCCCCCCCCC
Q 002026 181 PGLFVTPQTQAPPG 194 (978)
Q Consensus 181 p~~~~~~~~p~~~~ 194 (978)
|++++-+..+||++
T Consensus 369 p~~~~~~~l~~~~~ 382 (462)
T KOG2199|consen 369 PAYAHFAKLQGPAL 382 (462)
T ss_pred hhhccccCCCCccc
Confidence 45555433344444
No 118
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=33.19 E-value=30 Score=43.18 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q 002026 685 KDRELLLNERVLPLKRAAE 703 (978)
Q Consensus 685 ~ERE~LF~EyI~~LKk~ee 703 (978)
.++..-|+.||..|+++..
T Consensus 141 ~~~l~~l~~~l~~L~~e~~ 159 (619)
T PF03999_consen 141 LEELEELRQHLQRLQEEKE 159 (619)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566778888888866543
No 119
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=33.10 E-value=2.3e+02 Score=36.21 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=5.8
Q ss_pred HHHHHHHHHHh
Q 002026 817 VTSFQALLVET 827 (978)
Q Consensus 817 r~~F~aLL~E~ 827 (978)
...|++.|...
T Consensus 294 aea~l~~ll~s 304 (1064)
T KOG1144|consen 294 AEAFLKQLLAS 304 (1064)
T ss_pred HHHHHHHHHhc
Confidence 34466655544
No 120
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=32.84 E-value=1.4e+03 Score=31.05 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=28.4
Q ss_pred CCChhHHHhhhhcCcccc-cccC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 832 QASWTESRPKLEKDPQGR-ATNA-DLDSSDREKLFREHIKTLYERCAHDFRGLLAEVITA 889 (978)
Q Consensus 832 ~ssW~Eik~~L~kDpr~r-a~~~-~Ls~~dre~LF~dhI~~L~ek~r~dFr~LL~E~~~~ 889 (978)
--.|.+++.+...=..|+ .... .+...+.-..+++.++-|.. ..|.--|.++++.
T Consensus 1042 l~~w~~Lk~F~~~~~~w~~~~~~~~lP~e~~~~~l~~l~~~l~~---~~~~~~l~~l~~l 1098 (1201)
T PF12128_consen 1042 LEFWKPLKQFSDEYELWRSSDGSRELPSEEYVNALRELLDILPS---GGFSLSLEDLFDL 1098 (1201)
T ss_pred hccHHHHHHHHHHHHHHhcccCcccCCCHHHHHHHHHHHHHHhh---ccccccHHHHeee
Confidence 456888887766434442 2221 34444455666666665543 3344444454443
No 121
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=32.81 E-value=2.5e+02 Score=34.65 Aligned_cols=30 Identities=10% Similarity=0.238 Sum_probs=13.8
Q ss_pred HHhccCchhhcCCcccHHHHHHHHHHHHHH
Q 002026 738 DILRDDPRYKSVRHEDREVIFNEYVRELKA 767 (978)
Q Consensus 738 ~~L~~DpRy~aL~~~dRe~lFeeyI~eLe~ 767 (978)
+++.++-+|..-.-++...+|.--.+.+..
T Consensus 428 kk~~~~~~fse~~~~el~~l~~~~~~n~~~ 457 (533)
T COG1283 428 KKIANGRAFSEDGLEELDALFALTLENLRL 457 (533)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433334445555555555543
No 122
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=32.40 E-value=2e+02 Score=35.29 Aligned_cols=13 Identities=31% Similarity=0.205 Sum_probs=5.4
Q ss_pred CCCCCccccCCCC
Q 002026 314 SAIPGHQLVGTSG 326 (978)
Q Consensus 314 ~~~~g~q~~~t~g 326 (978)
+|.-|.=+..++.
T Consensus 292 ~AIeGVfP~~tpd 304 (582)
T PF03276_consen 292 PAIEGVFPTTTPD 304 (582)
T ss_pred hhhcccccCCCcc
Confidence 3444444444443
No 123
>KOG3514 consensus Neurexin III-alpha [Signal transduction mechanisms]
Probab=31.37 E-value=3.6e+02 Score=35.84 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=21.6
Q ss_pred ccCccccCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCC
Q 002026 151 FSDSTVATSSATALSTTTSWMPT--IPSFSTPPGLFVTPQTQAPPG 194 (978)
Q Consensus 151 ~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~p~~~~ 194 (978)
+++|+.|++.+.-...+.+-+.. .-|.|.|+.--.+-|+-|-||
T Consensus 1387 tfds~lpptddedfyttf~lvTd~tt~s~~~p~p~~Rtt~t~~~p~ 1432 (1591)
T KOG3514|consen 1387 TFDSSLPPTDDEDFYTTFPLVTDRTTLSKPAPRPNLRTTGTTGAPG 1432 (1591)
T ss_pred cccccCCCccccccccccccccccccccCCCCCccccccccccCcc
Confidence 45566666665544444333321 113344433334667767666
No 124
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=31.03 E-value=7.5e+02 Score=27.24 Aligned_cols=24 Identities=8% Similarity=0.272 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 868 IKTLYERCAHDFRGLLAEVITAEA 891 (978)
Q Consensus 868 I~~L~ek~r~dFr~LL~E~~~~~~ 891 (978)
+.+....+..||++.|..++...+
T Consensus 193 l~rFe~er~~dfk~~l~~fles~i 216 (234)
T cd07664 193 VGRFEKERVKDFKTVIIKYLESLV 216 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556778999999999987754
No 125
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=30.38 E-value=2.1e+02 Score=35.10 Aligned_cols=7 Identities=43% Similarity=1.146 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 002026 620 RALFERY 626 (978)
Q Consensus 620 KqlFeeY 626 (978)
|.||.+|
T Consensus 423 KnlFSKy 429 (940)
T KOG4661|consen 423 KNLFSKY 429 (940)
T ss_pred HHHHHHh
Confidence 3344443
No 126
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=30.31 E-value=3e+02 Score=32.86 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=24.0
Q ss_pred HHHHHHHHHhhhcCCCCCCCChHHHHHHhccCchhhcCCcccHHHHHHHHHHHHHHHH
Q 002026 712 AAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAE 769 (978)
Q Consensus 712 ~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL~~~dRe~lFeeyI~eLe~~e 769 (978)
..+..+..||..+ ...+++|. +...+..-.|||++|.+..
T Consensus 250 ~~IkeLg~liP~~--~~~~~~~n----------------KgtILk~s~dYIr~Lqq~~ 289 (411)
T KOG1318|consen 250 DRIKELGQLIPKC--NSEDMKSN----------------KGTILKASCDYIRELQQTL 289 (411)
T ss_pred HHHHHHHHhCCCC--Ccchhhcc----------------cchhhHHHHHHHHHHHHHH
Confidence 4556677777654 22344555 2233455589999997754
No 127
>PLN03086 PRLI-interacting factor K; Provisional
Probab=30.26 E-value=2.4e+02 Score=35.00 Aligned_cols=37 Identities=11% Similarity=0.014 Sum_probs=19.5
Q ss_pred CCCCChhHHHhhhhcCcccccccCCCChHHHHHHHHHHH
Q 002026 830 DPQASWTESRPKLEKDPQGRATNADLDSSDREKLFREHI 868 (978)
Q Consensus 830 ~p~ssW~Eik~~L~kDpr~ra~~~~Ls~~dre~LF~dhI 868 (978)
..+.+|..+..-+.-+...-. ..|.++-..+|-..++
T Consensus 73 ~~g~~~~~~~~~~~~~~~GdK--I~LPpSaL~~L~~~~~ 109 (567)
T PLN03086 73 GRGIVFSRIFEAVSFQGNGDK--IKLPPSCFTELSDQGA 109 (567)
T ss_pred CCCeEEEEEeeccccCCCCCe--EEcCHHHHHHHHhcCC
Confidence 567888876666554432111 1255665555555444
No 128
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.85 E-value=1.8e+03 Score=31.15 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=16.7
Q ss_pred CccccCHHHHHHhcCCCcccCCC
Q 002026 900 KTVLNSWSTAKRVLKPEPRYSKM 922 (978)
Q Consensus 900 ~t~~~sW~e~kk~Lk~D~RY~~l 922 (978)
+....-|..++.+|+.-+.+..+
T Consensus 489 v~~~~a~~~~~~~~~~~~~~~~~ 511 (1486)
T PRK04863 489 VSRSEAWDVARELLRRLREQRHL 511 (1486)
T ss_pred cCHHHHHHHHHHHHHHhHHHHHH
Confidence 45666799999999876666544
No 129
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=29.30 E-value=2.6e+02 Score=32.28 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=9.4
Q ss_pred CCCCChhHHHhhhhcC
Q 002026 830 DPQASWTESRPKLEKD 845 (978)
Q Consensus 830 ~p~ssW~Eik~~L~kD 845 (978)
+....|.+....|+..
T Consensus 291 ~E~~RW~~~~~~l~~~ 306 (344)
T PF12777_consen 291 GEKERWSEQIEELEEQ 306 (344)
T ss_dssp HHHHCCHCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHH
Confidence 3455787666665543
No 130
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.22 E-value=1.4e+02 Score=34.45 Aligned_cols=21 Identities=14% Similarity=0.305 Sum_probs=11.8
Q ss_pred cCCCCCCCCCccceeeccccc
Q 002026 88 INSNPSVPPGVSSFTYSASQT 108 (978)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~ 108 (978)
+|---..|.++.--+||||=.
T Consensus 53 l~~~GTIp~~~~G~tYnIPV~ 73 (365)
T KOG2391|consen 53 LQLDGTIPVPYQGVTYNIPVI 73 (365)
T ss_pred hhccCcccccccCCcccceEE
Confidence 333444555555567777743
No 131
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=27.92 E-value=9.3e+02 Score=27.31 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 859 DREKLFREHIKTLYERCAHDFRGLLAEVIT 888 (978)
Q Consensus 859 dre~LF~dhI~~L~ek~r~dFr~LL~E~~~ 888 (978)
++.+.=...|++|.++-+..-..||.-.+.
T Consensus 400 eklk~e~qkikeleek~~eeedal~~all~ 429 (445)
T KOG2891|consen 400 EKLKAEEQKIKELEEKIKEEEDALLLALLN 429 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455788888777777777776653
No 132
>KOG4264 consensus Nucleo-cytoplasmic protein MLN51 [General function prediction only]
Probab=27.67 E-value=6.4e+02 Score=31.04 Aligned_cols=143 Identities=16% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCcccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCcccCcC
Q 002026 160 SATALSTTTSWMPTIPSFSTPPGLFVTPQT--QAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQI 237 (978)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~ 237 (978)
++|+|...+..+| +|.|-|+-+.++. | -||+..-..++++......+|+.---|+-|++
T Consensus 541 ~~p~y~~G~~P~P----~P~pqg~yv~p~a~lp-~pg~~~y~~p~p~~n~~~~ppp~~~~pg~pPp-------------- 601 (694)
T KOG4264|consen 541 SSPNYRGGSHPHP----YPSPQGGYVSPNADLP-SPGGGGYHGPPPHHNNHHNPPPKRFVPGPPPP-------------- 601 (694)
T ss_pred cCCcccCCCCCCC----CCCCcccccCCcccCC-CCCcccCCCCCCCCCCCCCCCccccCCCCCCc--------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCc--cCCC
Q 002026 238 YPTYPSLPPIGVSPQGPLLRPPQMGVRPWLPFLPYPAAYPSPFPLPAHGMPNPSVSQIDAQPPGLSSVRTAAAT--SHSA 315 (978)
Q Consensus 238 ~p~~p~~p~~~~~~q~~~~~pp~~~~~~~~p~~~y~~~~~g~~~~p~~g~~~~~~~~p~~~ppg~~~~g~~~~~--~~~~ 315 (978)
.+..++--..+.-.|+|| --+++ .+|+ .|. ..|+++-|--.+-|..+.+..+++ .-|+
T Consensus 602 ------q~~q~l~~ptyfvpP~qm--t~g~~--------~~p~-~p~---AlPpp~~pH~~~ggq~~~~~~~~v~y~~P~ 661 (694)
T KOG4264|consen 602 ------QVAQGLVVPTYFVPPPQM--TRGST--------HGPN-QPN---ALPPPGGPHGGSGGQQRIRQPTDVVYFDPQ 661 (694)
T ss_pred ------cccccccccccccCcccc--ccCCC--------CCCC-CCC---CCCCCCccCCCCCccccccccCCceeeChH
Q ss_pred CCCccccCCCCCCCCCCCCCCccccc
Q 002026 316 IPGHQLVGTSGNTEAPPSGTDKKEHV 341 (978)
Q Consensus 316 ~~g~q~~~t~g~~~~~~~~~~~~~~~ 341 (978)
+.-.+.--+|+..--..+.+++.++.
T Consensus 662 qqQ~t~~p~Ppr~tk~~~~~~Pp~~e 687 (694)
T KOG4264|consen 662 QQQGTRQPLPPRSTKVIPIVDPPDHE 687 (694)
T ss_pred HhcccCCCCCCCCCccCcccCCCchh
No 133
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=27.47 E-value=2.9e+02 Score=33.33 Aligned_cols=8 Identities=13% Similarity=0.003 Sum_probs=3.4
Q ss_pred CCCCCCCC
Q 002026 216 LRPSVPTP 223 (978)
Q Consensus 216 ~~p~~p~~ 223 (978)
+-|+|+.-
T Consensus 535 P~P~M~~~ 542 (654)
T COG5180 535 PNPMMNGF 542 (654)
T ss_pred CCCCcCCc
Confidence 44444433
No 134
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=27.07 E-value=3.8e+02 Score=33.34 Aligned_cols=12 Identities=17% Similarity=0.290 Sum_probs=9.1
Q ss_pred ceeeccccccCC
Q 002026 100 SFTYSASQTVVG 111 (978)
Q Consensus 100 ~~~~~~~~~~~~ 111 (978)
=|.+.+|-+-.|
T Consensus 319 ~fy~~VPa~KcG 330 (600)
T KOG1676|consen 319 QFYMKVPADKCG 330 (600)
T ss_pred eEEEeccccccc
Confidence 788888877553
No 135
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=26.59 E-value=6.9e+02 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=14.4
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 002026 855 LDSSDREKLFREHIKTLYER 874 (978)
Q Consensus 855 Ls~~dre~LF~dhI~~L~ek 874 (978)
++..+-.+|++++|+.+.++
T Consensus 138 l~~~~~~~li~~~i~~~~~~ 157 (159)
T PRK09173 138 VDAKAASELFKDALAQVKTR 157 (159)
T ss_pred cCHHHHHHHHHHHHHHHhhh
Confidence 45555678899998887654
No 136
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=26.46 E-value=2.4e+02 Score=33.59 Aligned_cols=20 Identities=25% Similarity=0.317 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 002026 161 ATALSTTTSWMPTIPSFSTP 180 (978)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (978)
++.+.|+-|++|+.|++|+|
T Consensus 50 p~~lkP~~s~ap~~p~sppP 69 (523)
T KOG3837|consen 50 PPGLKPGDSDAPVRPDSPPP 69 (523)
T ss_pred CCCCCccccCCCCCCCCCCC
Confidence 33444445555555555544
No 137
>PLN02316 synthase/transferase
Probab=26.34 E-value=2.4e+02 Score=37.58 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=10.9
Q ss_pred CCcccHHHHHHHHHHHHH
Q 002026 749 VRHEDREVIFNEYVRELK 766 (978)
Q Consensus 749 L~~~dRe~lFeeyI~eLe 766 (978)
|+....+..|++|..+.+
T Consensus 237 V~~~~~~~~~~~~l~ee~ 254 (1036)
T PLN02316 237 IEGGMDEHSFEDFLLEEK 254 (1036)
T ss_pred eCCCCCHHHHHHHHHHHH
Confidence 444445677888866543
No 138
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=26.21 E-value=1.3e+03 Score=29.51 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=39.5
Q ss_pred cHHHHHHHhcCCchhccCCH-HHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCChHH
Q 002026 665 DYQTFKKKWGSDPRFEALDR-KDRE--------LLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKGDITLSSRWSK 735 (978)
Q Consensus 665 ~W~e~~kk~~~DpRfkaLd~-~ERE--------~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~~It~~T~Wsd 735 (978)
+|..++.+...||.|..+.. -+|- .|+-.|++.|-++- .-...+-.|..-|+.++---+.--|.-
T Consensus 70 R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~------~iT~tR~tfdrALraLpvtqH~rIW~l 143 (835)
T KOG2047|consen 70 RRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG------LITRTRRTFDRALRALPVTQHDRIWDL 143 (835)
T ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------hHHHHHHHHHHHHHhCchHhhccchHH
Confidence 44555556666777766533 1221 35566666554432 112344556666666632224455887
Q ss_pred HHHHhccCc
Q 002026 736 VKDILRDDP 744 (978)
Q Consensus 736 vk~~L~~Dp 744 (978)
+...+++.+
T Consensus 144 yl~Fv~~~~ 152 (835)
T KOG2047|consen 144 YLKFVESHG 152 (835)
T ss_pred HHHHHHhCC
Confidence 777776654
No 139
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=26.09 E-value=95 Score=35.97 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=44.8
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeeccCCh
Q 002026 364 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQIPS 437 (978)
Q Consensus 364 ~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~P~ 437 (978)
+.+|.+|-+|..|++..|.++..... .| +...+..-+.+.+|++|=+|..|++..|..+.
T Consensus 263 ~~~g~l~ald~~tG~~~W~~~~~~~~---------~~-----~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~ 322 (394)
T PRK11138 263 AYNGNLVALDLRSGQIVWKREYGSVN---------DF-----AVDGGRIYLVDQNDRVYALDTRGGVELWSQSD 322 (394)
T ss_pred EcCCeEEEEECCCCCEEEeecCCCcc---------Cc-----EEECCEEEEEcCCCeEEEEECCCCcEEEcccc
Confidence 45899999999999999998643110 11 12234555667899999999999999998653
No 140
>KOG3753 consensus Circadian clock protein period [Signal transduction mechanisms]
Probab=26.03 E-value=3.4e+02 Score=35.25 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=12.2
Q ss_pred hHhhhcccccCchhhcccCh
Q 002026 597 WEKELPKIVFDPRFKAIQSQ 616 (978)
Q Consensus 597 Wekal~kI~~DPRY~aL~s~ 616 (978)
-+.+++ +..||.|..+...
T Consensus 1023 ~~~v~~-v~qdPiw~~~~~a 1041 (1114)
T KOG3753|consen 1023 IESVIK-VLQDPIWLLMAPA 1041 (1114)
T ss_pred ccchhh-cccCchhhhccCC
Confidence 344555 6678888877644
No 141
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=25.97 E-value=68 Score=23.28 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEcCCCceEEEeCCCCeeeccC
Q 002026 414 VTTNDGKKYYYNSKMKVSSWQI 435 (978)
Q Consensus 414 ~~t~dGr~YyyN~~T~~S~We~ 435 (978)
+-+.+|..|-+|..||+..|+.
T Consensus 11 ~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 11 VGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEcCCCEEEEEEcccCcEEEEc
Confidence 4467899999999999999975
No 142
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=25.68 E-value=7.6e+02 Score=31.75 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=7.3
Q ss_pred cCCCCCceEEE
Q 002026 353 NEQLDAWTAHK 363 (978)
Q Consensus 353 ~~~~~~W~e~~ 363 (978)
.+.++||--.+
T Consensus 1080 ~edpSGWw~gk 1090 (1106)
T KOG0162|consen 1080 REDPSGWWLGK 1090 (1106)
T ss_pred ccCCCcchhhc
Confidence 45677887665
No 143
>KOG3190 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.38 E-value=6.3e+02 Score=28.06 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=23.6
Q ss_pred hccCchhhcCCcccHHHHHH---HHHHHHHHHHHHHH
Q 002026 740 LRDDPRYKSVRHEDREVIFN---EYVRELKAAEEEAE 773 (978)
Q Consensus 740 L~~DpRy~aL~~~dRe~lFe---eyI~eLe~~e~e~e 773 (978)
+.-||||+++.+.--.++|. .|++++...+.+..
T Consensus 111 ~~rDPRFD~lsG~l~~~~~~knYqFLde~R~~E~eLk 147 (256)
T KOG3190|consen 111 KKRDPRFDALSGDLDEECFRKNYQFLDEIRVKEIELK 147 (256)
T ss_pred cccCcchhhccCccCHHHHHhhhhhHhhhhhhHHHHH
Confidence 67899999998754455665 57777766655433
No 144
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.19 E-value=4.9e+02 Score=33.73 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=8.0
Q ss_pred CCeeeccCChhHHHhh
Q 002026 428 MKVSSWQIPSEVTELK 443 (978)
Q Consensus 428 T~~S~We~P~el~~l~ 443 (978)
||.+.+-.|..+.++.
T Consensus 218 sg~t~y~ep~~~~~ln 233 (782)
T PRK00409 218 SGATLYIEPQSVVELN 233 (782)
T ss_pred CCCEEEEEcHHHHHHH
Confidence 4444444566555443
No 145
>KOG3895 consensus Synaptic vesicle protein Synapsin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.86 E-value=3.6e+02 Score=31.62 Aligned_cols=90 Identities=17% Similarity=0.050 Sum_probs=0.0
Q ss_pred CCCCCCCCccccccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC---CcccCCCCCCCccCCCCCCC
Q 002026 139 TNSQPVQASVRTFSDSTVATSSATALSTTTSWMPTIPSFSTPPGLFVTPQT-QAPPG---LLTLRTKDTSSAFGDFYSSA 214 (978)
Q Consensus 139 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-p~~~~---~~~~~~~~~~~~~~~~~~~~ 214 (978)
+.++.+-.+..+-..|+++.+-.-..+..+++++--|.-|+|-|-++..|- +.|.| +...+||+.|.+
T Consensus 394 l~~~~~a~sP~rp~t~q~~~~~~~~g~a~~~pt~~~PprPppqggppP~g~~~~p~~~~hl~~~gppq~prt-------- 465 (488)
T KOG3895|consen 394 LTRPIAAESPARPTTSQVPSGGGLPGPAQASPTRRLPPRPPPQGGPPPRGHMSDPVGSRHLDHDGPPQIPRT-------- 465 (488)
T ss_pred cCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCccccccCCCCCCCCCCCC--------
Q ss_pred CCCCCCCCCCCCCCCCCcccCc
Q 002026 215 GLRPSVPTPSAPSNSGSAIQHQ 236 (978)
Q Consensus 215 ~~~p~~p~~~~~~~~~~~~~~~ 236 (978)
++|+.++...+.....+|+-.+
T Consensus 466 ~sr~s~~~t~~q~~~t~Ag~~g 487 (488)
T KOG3895|consen 466 GSRESVDDTMGQLKRTFAGFFG 487 (488)
T ss_pred CCCCCCccccccCCccccCCCC
No 146
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=24.74 E-value=7.9e+02 Score=25.40 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=10.7
Q ss_pred CChHHHHHHHHHHHHHH
Q 002026 855 LDSSDREKLFREHIKTL 871 (978)
Q Consensus 855 Ls~~dre~LF~dhI~~L 871 (978)
++..+-.+|.+++|+.|
T Consensus 155 l~~~~~~~li~~~i~~l 171 (174)
T PRK07352 155 LDEDAQQRLIDRSIANL 171 (174)
T ss_pred cCHHHHHHHHHHHHHhh
Confidence 34455567777777665
No 147
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=24.45 E-value=8.7e+02 Score=25.79 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 868 IKTLYERCAHDFRGLLAEVITAEA 891 (978)
Q Consensus 868 I~~L~ek~r~dFr~LL~E~~~~~~ 891 (978)
+++....+..+|+.+|.+++...+
T Consensus 197 ~~rf~~~k~~d~k~~l~~~~~~~i 220 (236)
T PF09325_consen 197 LERFEKEKVKDFKSMLEEYAESQI 220 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445677889999999887754
No 148
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.99 E-value=1.1e+03 Score=26.84 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=5.3
Q ss_pred HHHHHHHhhHHH
Q 002026 805 ERVRLKVRRKEA 816 (978)
Q Consensus 805 eR~R~k~rr~Ea 816 (978)
+|.+++++++++
T Consensus 160 qRV~~~Ie~DKa 171 (290)
T KOG2689|consen 160 QRVLRQIERDKA 171 (290)
T ss_pred HHHHHHHHHhHH
Confidence 344444444444
No 149
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=23.72 E-value=8.1e+02 Score=25.20 Aligned_cols=20 Identities=15% Similarity=0.252 Sum_probs=13.8
Q ss_pred CChHHHHHHHHHHHHHHHHH
Q 002026 855 LDSSDREKLFREHIKTLYER 874 (978)
Q Consensus 855 Ls~~dre~LF~dhI~~L~ek 874 (978)
|+..+-.+|.+++|+.+.++
T Consensus 146 l~~~~~~~lid~~i~~~g~~ 165 (167)
T PRK14475 146 LAGAKSDPLVDAAIGQMGAK 165 (167)
T ss_pred cCHHHHHHHHHHHHHHHhhh
Confidence 34555568888888877554
No 150
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=79 Score=36.97 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=28.1
Q ss_pred CceEEEcCCCCeeeecCCCCceeccCCCCC
Q 002026 358 AWTAHKTDTGIVYYYNAVTGESTYEKPAGF 387 (978)
Q Consensus 358 ~W~e~~~~dGr~YYyN~~T~~StWekP~~l 387 (978)
+|..+.+++|..||||++-+.++|-.|.+.
T Consensus 117 ~~h~~~~~~g~r~F~~~i~~ktt~ldd~e~ 146 (358)
T KOG0940|consen 117 GWHMRFTDTGQRPFYKHILKKTTTLDDREA 146 (358)
T ss_pred ceeeEecCCCceehhhhhhcCccccCchhh
Confidence 899999999999999999999999988765
No 151
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=23.51 E-value=7.2e+02 Score=30.16 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred CCccccccCccccCCCCCCCCCCCCCCCCC
Q 002026 145 QASVRTFSDSTVATSSATALSTTTSWMPTI 174 (978)
Q Consensus 145 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 174 (978)
.+.-.++++|+-..+.+++.+|+.+.||+-
T Consensus 15 ~~~~~~~~~~s~~~~~a~~~~~~a~~~~~~ 44 (641)
T KOG3915|consen 15 SSSGTTTSTSSATSSPAPSIGPPASSGPTL 44 (641)
T ss_pred ccccccccccccccCCCCCCCCccccCccc
Confidence 333345677777777888888888777764
No 152
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.76 E-value=1.2e+02 Score=35.07 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=7.1
Q ss_pred CCCCCCCCCCC
Q 002026 215 GLRPSVPTPSA 225 (978)
Q Consensus 215 ~~~p~~p~~~~ 225 (978)
-+||++|++.+
T Consensus 9 ~~~p~~~pp~a 19 (362)
T KOG1546|consen 9 CQRPMAPPPGA 19 (362)
T ss_pred CCCCCCCCCCC
Confidence 46777776654
No 153
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=22.63 E-value=2e+02 Score=34.82 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=19.5
Q ss_pred ccCCCCCCcccccccccchhhhccCCCCCCCCCCCCCC
Q 002026 108 TVVGYSPNQQFQPNMNKLEAVEDAGLGSSTSTNSQPVQ 145 (978)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (978)
-+++-.++|.||-=+.-+-.....+-+.-.++-+++++
T Consensus 385 Iv~~c~~~~~l~~wve~ln~~~~v~~~~n~~lr~~~~~ 422 (661)
T KOG2070|consen 385 IVVSCNNQQDLQEWVEHLNKQTKVTSVGNPTLRPHSVP 422 (661)
T ss_pred eeeccCChHHHHHHHHHhhhcceeccCCCccccccccc
Confidence 34555777878765544443334444444444444443
No 154
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=22.55 E-value=4.2e+02 Score=32.70 Aligned_cols=9 Identities=22% Similarity=0.327 Sum_probs=3.4
Q ss_pred cCCccCCcc
Q 002026 17 NAPISGKPV 25 (978)
Q Consensus 17 ~~~~~~~~~ 25 (978)
+--|.+.|-
T Consensus 18 ~~gi~~nP~ 26 (582)
T PF03276_consen 18 ENGIPRNPR 26 (582)
T ss_pred ccCCCCCCC
Confidence 333333333
No 155
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.47 E-value=9.8e+02 Score=25.69 Aligned_cols=17 Identities=41% Similarity=0.681 Sum_probs=9.7
Q ss_pred CChHHHHHHHHHHHHHH
Q 002026 855 LDSSDREKLFREHIKTL 871 (978)
Q Consensus 855 Ls~~dre~LF~dhI~~L 871 (978)
+++.+-.+|.+++|++|
T Consensus 184 ld~~~~~~lI~~~i~~l 200 (205)
T PRK06231 184 VDREDDDKLVDEFIREL 200 (205)
T ss_pred CCHHHHHHHHHHHHHHc
Confidence 34444456666666655
No 156
>PF07960 CBP4: CBP4; InterPro: IPR012420 The CBP4 gene in Saccharomyces cerevisiae is essential for the expression and activity of ubiquinol-cytochrome c reductase [, ]. This family appears to be fungal specific.
Probab=22.46 E-value=8.2e+02 Score=24.76 Aligned_cols=36 Identities=22% Similarity=0.337 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 002026 688 ELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREK 724 (978)
Q Consensus 688 E~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~ 724 (978)
++||..|-=+|+++..+. +..|.+--++|...|++.
T Consensus 34 EeL~~r~sPELrkr~~~~-r~~Rq~e~~~~~~~lKe~ 69 (128)
T PF07960_consen 34 EELFKRYSPELRKRYLEN-RELRQQEFDEFMKILKET 69 (128)
T ss_pred HHHHHhcCHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 678888888888776544 345555668888888875
No 157
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=22.35 E-value=1.2e+03 Score=26.79 Aligned_cols=13 Identities=54% Similarity=0.825 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 002026 759 NEYVRELKAAEEE 771 (978)
Q Consensus 759 eeyI~eLe~~e~e 771 (978)
.+|..+|.+++++
T Consensus 329 ~e~~~e~qrkEee 341 (406)
T KOG3859|consen 329 NEFLGELQRKEEE 341 (406)
T ss_pred HHHHHHHHHhHHH
Confidence 3566666655543
No 158
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=22.28 E-value=4.7e+02 Score=28.07 Aligned_cols=48 Identities=23% Similarity=0.439 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCChHHHHHHhccCchhhcCCcccHHHHHHHHHHHHHHHH
Q 002026 706 AQAIRAAAASSFKSMLREKGDITLSSRWSKVKDILRDDPRYKSVRHEDREVIFNEYVRELKAAE 769 (978)
Q Consensus 706 ~r~~Rk~a~~~Fk~LL~e~~~It~~T~Wsdvk~~L~~DpRy~aL~~~dRe~lFeeyI~eLe~~e 769 (978)
.|..|+.+.+.++++.++. .|+ .|.... ...+.+.++.+||.++....
T Consensus 130 iRniRrda~d~iKK~~K~~-~is-------------EDe~k~--~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 130 VRNIRRDANDKIKKLEKDK-EIS-------------EDEVKK--AEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred HHHHHHHHHHHHHHHhccC-Ccc-------------hHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3556677778888877653 332 122111 12356789999999987643
No 159
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=1e+03 Score=25.92 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCCch-Hhhhccc-ccCchhhcccChHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q 002026 570 ETGPTKEECIIKFKEMLKERGVAPFSKW-EKELPKI-VFDPRFKAIQSQSARRALFERYVKTRAEEER--KEKRAAQKAA 645 (978)
Q Consensus 570 e~~~skEEak~aFkeLLkE~~V~~~stW-ekal~kI-~~DPRY~aL~s~~ERKqlFeeYi~er~keEr--eEkr~k~k~A 645 (978)
+...+-|++++.|+.|--=..-+-+--= +++-..| +-+.-|+.|.+...|+.|-+-|...+..-++ .|++.+.++
T Consensus 62 dpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~~y~~ak~~~~~~~~ekkkklkK- 140 (250)
T KOG1150|consen 62 DPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLDVYTAAKNRLEKVMSEKKKKLKK- 140 (250)
T ss_pred CCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q ss_pred HHHHHHHHHhhhcCCCCCccHHHHHH--HhcCCchhccCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 002026 646 IEGFKQLLEEVSEDIDHSTDYQTFKK--KWGSDPRFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLRE 723 (978)
Q Consensus 646 ke~F~~LLee~~~~I~~~T~W~e~~k--k~~~DpRfkaLd~~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e 723 (978)
+-.+.+.....=.-|.. .+..-..|..|+.+-.+..-.+--..-+.++.|-.++.+++....|.+-.++
T Consensus 141 ---------egkpt~ieedDp~lfk~av~~~~mklfae~erkRk~~e~r~~~eRkr~re~eIeaeek~Kr~~E~qKnfEE 211 (250)
T KOG1150|consen 141 ---------EGKPTIIEEDDPELFKQAVYKQVMKLFAELERKRKELEARANEERKRQREEEIEAEEKRKREREWQKNFEE 211 (250)
T ss_pred ---------cCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCCCCCCChHHHHHH
Q 002026 724 KGDITLSSRWSKVKDI 739 (978)
Q Consensus 724 ~~~It~~T~Wsdvk~~ 739 (978)
. -=..-..|.+++..
T Consensus 212 s-Rd~Rv~sWrnFq~~ 226 (250)
T KOG1150|consen 212 S-RDGRVGSWRNFQAK 226 (250)
T ss_pred h-cccccchHHHHHHh
No 160
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=22.10 E-value=2.2e+02 Score=31.75 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCccccCHHHHHHhcCC-CcccCCCChhHHHHHHHHHHHHHH
Q 002026 861 EKLFREHIKTLYERCAHDFRGLLAEVITAEAAAQETEDGKTVLNSWSTAKRVLKP-EPRYSKMPRKEREALWRRHAEEIQ 939 (978)
Q Consensus 861 e~LF~dhI~~L~ek~r~dFr~LL~E~~~~~~~~~~~~d~~t~~~sW~e~kk~Lk~-D~RY~~l~~~eRe~lf~~~ie~l~ 939 (978)
.+.+++--+-|.||+|+++.+-..+-++.. |...++. +.+-.+|.+.|...++.+|++.+.
T Consensus 28 ~~~~rk~~Kpl~EKkRRaRIN~~L~eLK~L------------------i~e~~~~~~~~~sklEKAdILEltV~hL~~l~ 89 (250)
T KOG4304|consen 28 TRQYRKVRKPLLEKKRRARINRCLDELKDL------------------IPEALKKDGQRHSKLEKADILELTVNHLRQLQ 89 (250)
T ss_pred hHHHhhhcchhHHHHHHHHHHHHHHHHHHH------------------HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHh
Confidence 445666666666666666544433332221 1122222 245567888899999999999999
Q ss_pred Hhhhcccc
Q 002026 940 RKHKSSLD 947 (978)
Q Consensus 940 ~k~k~~~~ 947 (978)
+.......
T Consensus 90 ~~~~~~~~ 97 (250)
T KOG4304|consen 90 RSQQAAAQ 97 (250)
T ss_pred cccccccc
Confidence 87665543
No 161
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=21.80 E-value=9.1e+02 Score=30.78 Aligned_cols=134 Identities=16% Similarity=0.252 Sum_probs=74.7
Q ss_pred chHhhhcccccCchhhcccChHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccHH
Q 002026 596 KWEKELPKIVFDPRFKAIQSQSARRAL--------FERYVKTRAEEERKEKRAAQKAAIEGFKQLLEEVSEDIDHSTDYQ 667 (978)
Q Consensus 596 tWekal~kI~~DPRY~aL~s~~ERKql--------FeeYi~er~keEreEkr~k~k~Ake~F~~LLee~~~~I~~~T~W~ 667 (978)
+|+++..++..||.|..+.+--||--+ |-.||.-+.+.-. ....+-.|-.-|... +-.-|.--|.
T Consensus 70 R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~------iT~tR~tfdrALraL-pvtqH~rIW~ 142 (835)
T KOG2047|consen 70 RRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGL------ITRTRRTFDRALRAL-PVTQHDRIWD 142 (835)
T ss_pred HHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcch------HHHHHHHHHHHHHhC-chHhhccchH
Confidence 778889999999999999876677655 4567765554322 223334455555432 1112333465
Q ss_pred HHHHHhcCC--c--------hhccCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhcC-----CCCCCCC
Q 002026 668 TFKKKWGSD--P--------RFEALDRKDRELLLNERVLPLKRAAEEKAQAIRAAAASSFKSMLREKG-----DITLSSR 732 (978)
Q Consensus 668 e~~kk~~~D--p--------RfkaLd~~ERE~LF~EyI~~LKk~eeEk~r~~Rk~a~~~Fk~LL~e~~-----~It~~T~ 732 (978)
-+.+.+..+ | ||-.+....|+ |||.-|.+... -.++...+..+|.... .-+..--
T Consensus 143 lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e----eyie~L~~~d~------~~eaa~~la~vln~d~f~sk~gkSn~ql 212 (835)
T KOG2047|consen 143 LYLKFVESHGLPETSIRVYRRYLKVAPEARE----EYIEYLAKSDR------LDEAAQRLATVLNQDEFVSKKGKSNHQL 212 (835)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhcCHHHHH----HHHHHHHhccc------hHHHHHHHHHhcCchhhhhhcccchhhH
Confidence 555444332 2 34445554433 45554544321 1223444555665321 1234457
Q ss_pred hHHHHHHhccCchh
Q 002026 733 WSKVKDILRDDPRY 746 (978)
Q Consensus 733 Wsdvk~~L~~DpRy 746 (978)
|.++.++|..+|.-
T Consensus 213 w~elcdlis~~p~~ 226 (835)
T KOG2047|consen 213 WLELCDLISQNPDK 226 (835)
T ss_pred HHHHHHHHHhCcch
Confidence 99999999888854
No 162
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=21.80 E-value=2.2e+03 Score=29.44 Aligned_cols=39 Identities=18% Similarity=0.474 Sum_probs=29.7
Q ss_pred CCChHHHHHHhccCchhhcC------CcccHHHHHHHHHHHHHHH
Q 002026 730 SSRWSKVKDILRDDPRYKSV------RHEDREVIFNEYVRELKAA 768 (978)
Q Consensus 730 ~T~Wsdvk~~L~~DpRy~aL------~~~dRe~lFeeyI~eLe~~ 768 (978)
.+-|.+++.+|+++.-|... +.+.++.+++-|-+.|.+.
T Consensus 908 ~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~ 952 (1265)
T KOG1920|consen 908 ETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREE 952 (1265)
T ss_pred ccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999742 2355677887777777654
No 163
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=21.78 E-value=36 Score=42.62 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCCCceEEEcCCCCeeeecCCCCceeccCCC
Q 002026 354 EQLDAWTAHKTDTGIVYYYNAVTGESTYEKPA 385 (978)
Q Consensus 354 ~~~~~W~e~~~~dGr~YYyN~~T~~StWekP~ 385 (978)
.....|+...+++--+||.|+.|..|.|++|.
T Consensus 349 svq~pw~rais~nkvpyyinh~~q~t~wdhp~ 380 (966)
T KOG4286|consen 349 SVQGPWERAISPNKVPYYINHETQTTCWDHPK 380 (966)
T ss_pred cCcccchhccCccccchhhcccchhhhccchH
Confidence 34456999999999999999999999999996
No 164
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=21.38 E-value=5.3e+02 Score=27.66 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002026 857 SSDREKLFREHIKTLYERCAHDFRGLL 883 (978)
Q Consensus 857 ~~dre~LF~dhI~~L~ek~r~dFr~LL 883 (978)
+.+.++|+++||+.+.+-..+.-++|+
T Consensus 159 e~~iQKlTd~yi~~iD~~~~~KEkEim 185 (187)
T COG0233 159 EEEIQKLTDEYIKKIDELLKDKEKEIM 185 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999888664444444443
No 165
>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]
Probab=21.35 E-value=6.9e+02 Score=26.25 Aligned_cols=11 Identities=18% Similarity=0.009 Sum_probs=4.8
Q ss_pred ccccccccchh
Q 002026 117 QFQPNMNKLEA 127 (978)
Q Consensus 117 ~~~~~~~~~~~ 127 (978)
+.|..++.+.+
T Consensus 45 qAq~liD~~~~ 55 (165)
T KOG3454|consen 45 QAQKLIDETIL 55 (165)
T ss_pred HHHHHHHHHHH
Confidence 34445544433
No 166
>KOG3537 consensus Adaptor protein NUMB [Signal transduction mechanisms]
Probab=21.26 E-value=3.2e+02 Score=32.78 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCC
Q 002026 255 LLRPPQMGVRPWLP 268 (978)
Q Consensus 255 ~~~pp~~~~~~~~p 268 (978)
|.--|++-|.++||
T Consensus 493 ~~a~p~P~~~~~pP 506 (543)
T KOG3537|consen 493 WNASPNPMKIPQPP 506 (543)
T ss_pred cccCCCcCCCCCCC
Confidence 44455555556655
No 167
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=21.10 E-value=1.1e+02 Score=35.26 Aligned_cols=62 Identities=23% Similarity=0.346 Sum_probs=47.5
Q ss_pred cCCCCeeeecCCCCceeccCCCCCCCCCCCCCCCCCCcccccCCCCCcEEEEcCCCceEEEeCCCCeeeccC
Q 002026 364 TDTGIVYYYNAVTGESTYEKPAGFKGEPDKVPVQPTPISMEHLTGTDWALVTTNDGKKYYYNSKMKVSSWQI 435 (978)
Q Consensus 364 ~~dGr~YYyN~~T~~StWekP~~l~~~~e~~~~qp~P~~~~~l~~~~W~e~~t~dGr~YyyN~~T~~S~We~ 435 (978)
+-+|+.|.||..|++-.|...... . .. ....++.+.+|.-+.+.+|.+|=.|..|++..|+.
T Consensus 118 ~~~g~~y~ld~~~G~~~W~~~~~~-~--~~-------~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 118 SWDGKLYALDASTGTLVWSRNVGG-S--PY-------YASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTY 179 (370)
T ss_pred cccceEEEEECCCCcEEEEEecCC-C--eE-------EecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEE
Confidence 347789999999999999988765 1 00 01123455778877778999999999999999994
No 168
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=21.05 E-value=6.6e+02 Score=32.52 Aligned_cols=24 Identities=17% Similarity=-0.054 Sum_probs=13.4
Q ss_pred CCchhccCCHHHHHHHHHHHHHHh
Q 002026 675 SDPRFEALDRKDRELLLNERVLPL 698 (978)
Q Consensus 675 ~DpRfkaLd~~ERE~LF~EyI~~L 698 (978)
=|.-+..++..++..|....+..|
T Consensus 408 lDE~g~GtD~~eg~ala~aiLe~l 431 (771)
T TIGR01069 408 FDELGAGTDPDEGSALAISILEYL 431 (771)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHH
Confidence 344455666667766655444444
No 169
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=20.87 E-value=1.7e+03 Score=27.73 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=7.4
Q ss_pred cCCcccCCccccccCCCCC
Q 002026 63 TGGVIPQSSFSFQNSEGSG 81 (978)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~ 81 (978)
++|-.|---++-+++.+..
T Consensus 228 ~~g~~p~~~~ts~~~~~~~ 246 (538)
T KOG1049|consen 228 IPGPGPVGNLTSRTSVGAR 246 (538)
T ss_pred cCCCCCccccCCccccccc
Confidence 3333333334444444433
No 170
>KOG2677 consensus Stoned B synaptic vesicle biogenesis protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.84 E-value=1.2e+03 Score=29.55 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCCCCCCCCcccCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCcccCcCCCCCCCCC
Q 002026 178 STPPGLFVTPQTQAPPGLLTLRTKDTSSAFGDFYSSAGLRPSVPTPSAPSNSGSAIQHQIYPTYPSLP 245 (978)
Q Consensus 178 ~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~p~~p~~p 245 (978)
|..|++-.-+++||+|..-.+++++.|.-.+++ .-+..|+-.+.++-+.++ -.-+-..++-||.+
T Consensus 250 pl~peirrvp~~paIP~a~rsvi~dVp~~S~gS-~~~~~~~~s~l~~~s~~~--kldha~l~~~~S~t 314 (922)
T KOG2677|consen 250 PLKPEIRRVPNTPAIPSASRSVIPDVPYNSMGS-FKKRDRPKSTLMNFSKVQ--KLDHASLNRTPSVT 314 (922)
T ss_pred cCCcccccCCCCCCCCCcccccCCCCCcccCCC-cccCCCcccccccCCCCc--ccccccCCCCCCCC
Confidence 455777777889999997788899888765443 344555555555432332 33444444445544
No 171
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=20.84 E-value=8.9e+02 Score=31.20 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=3.7
Q ss_pred CCCCcc
Q 002026 299 PPGLSS 304 (978)
Q Consensus 299 ppg~~~ 304 (978)
|.||.-
T Consensus 1083 pSGWw~ 1088 (1106)
T KOG0162|consen 1083 PSGWWL 1088 (1106)
T ss_pred CCcchh
Confidence 666655
No 172
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=20.69 E-value=1.4e+03 Score=26.90 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=18.5
Q ss_pred ccccccccchhhh--ccCCCCCCCCCCCCC
Q 002026 117 QFQPNMNKLEAVE--DAGLGSSTSTNSQPV 144 (978)
Q Consensus 117 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 144 (978)
+||--|-||..+. |+...+.....++++
T Consensus 88 lfagG~pkLk~~~n~d~~~~~~~~palpip 117 (437)
T KOG4462|consen 88 LFAGGMPKLKPSSNNDSTKPSPSAPALPIP 117 (437)
T ss_pred hhccCccccccccccccccCCCCcccCCCC
Confidence 6788888888777 666665555555544
No 173
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=20.59 E-value=4.6e+02 Score=36.01 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=16.8
Q ss_pred eeeccccccCCC-CCCccccccc
Q 002026 101 FTYSASQTVVGY-SPNQQFQPNM 122 (978)
Q Consensus 101 ~~~~~~~~~~~~-~~~~~~~~~~ 122 (978)
..-|.+++..|+ ++||-+=+-.
T Consensus 1867 ~~ln~~~~~~g~~tqnq~l~pgg 1889 (2220)
T KOG3598|consen 1867 AALNAPETNKGMDTQNQKLAPGG 1889 (2220)
T ss_pred HhccCCCCCCCcccCCCCCCCCC
Confidence 455789999998 9999775544
No 174
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.30 E-value=1.1e+03 Score=25.54 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHhh
Q 002026 812 RRKEAVTSFQALLVETI 828 (978)
Q Consensus 812 rr~Ear~~F~aLL~E~v 828 (978)
+..+.+..|..||..+.
T Consensus 120 kL~~tr~~Y~~L~~aM~ 136 (201)
T PF11172_consen 120 KLAETRRRYAQLIKAMR 136 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34456677888887764
Done!