BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002027
(978 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZ7|A Chain A, Aquifex Aeolicus Amylomaltase
pdb|1TZ7|B Chain B, Aquifex Aeolicus Amylomaltase
Length = 505
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/331 (29%), Positives = 160/331 (48%), Gaps = 36/331 (10%)
Query: 273 RGAGVAVPMFSVRSEADLG-VGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSY 331
R AG+ + + S+ S +G +G+ + +D+ E GF L Q+LP+N TS+ +
Sbjct: 22 RLAGILLHVTSLPSPYGIGDLGK--EAYRFLDFLKECGFSLWQVLPLNPTSLEA---GNS 76
Query: 332 PYSSLSVFALHPLYLRVQALSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKV 391
PYSS S+FA + + + + L E ED+ KE + + L + YE K + K
Sbjct: 77 PYSSNSLFAGNYVLIDPEELLE---EDLIKERDLKRFPLG--EALYEVVYEYKKELLEKA 131
Query: 392 FNQEKDLILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTSDHSQWGRFSHYSKDKLAKL 451
F + L ++F E+ WL+ YA + +++ + +W Y D+ K
Sbjct: 132 FKNFRRFEL----LEDFLKEHSYWLRDYALYMAIKE----EEGKEW-----YEWDEELKR 178
Query: 452 ISEDSLHYDIIRFH------YYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDT 505
+++L + + +VQF Q + YAR++G+ + GDLP+ +S D
Sbjct: 179 REKEALKRVLNKLKGRFYFHVFVQFVFFKQWEKLRRYARERGISIVGDLPMYPSYSSADV 238
Query: 506 WVYPNLFRMNTS------TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSK 559
W P LF+++ G PPD+F K GQ WG P YNWEE K+ + WW R+ K
Sbjct: 239 WTNPELFKLDGDLKPLFVAGVPPDFFSKTGQLWGNPVYNWEEHEKEGFRWWIRRVLHNLK 298
Query: 560 YFTAYRIDHILGFFRIWELPEHAMTGLIGKF 590
F R+DH GF WE+P T + G++
Sbjct: 299 LFDFLRLDHFRGFEAYWEVPYGEETAVNGRW 329
>pdb|2X1I|A Chain A, Glycoside Hydrolase Family 77 4-Alpha-Glucanotransferase
From Thermus Brockianus
Length = 500
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 146/334 (43%), Gaps = 41/334 (12%)
Query: 307 ESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMPEDIKKEIEKA 366
E+G Q+LP+ T DS PY S S FA +P + D++ +++
Sbjct: 38 EAGARYWQVLPLGPTGYG----DS-PYQSFSAFAGNPYLI-----------DLRPLVDRG 81
Query: 367 KVQLD-----KKDVDYEATLATKLAIARKVFN--QEKDLILNSSAFQNFFSENEDWLKPY 419
V+L+ + VDY A K R F ++K F F E WL+ Y
Sbjct: 82 FVRLEDPGFPEGRVDYGLLYAWKWPALRAAFQGFRQKASPEEKEDFARFQEEEAWWLRDY 141
Query: 420 AAFCFLRDFFDTSDHSQWGRFSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEA 479
A F L+ + W + ++++ A +E SL +I FH + Q+ Q
Sbjct: 142 ALFMTLKSHHGGLPWNAW-PLALRTREERALKEAEASLAEEIA-FHAFTQWLFFRQWGAL 199
Query: 480 AEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLF------RMNTSTGAPPDYFDKNGQNWG 533
E A G+ GD+PI V +S + W +P F R G PPDYF + GQ WG
Sbjct: 200 KEEAEALGIAFIGDMPIFVAEDSAEVWAHPEWFHLDEEGRPTVVAGVPPDYFSETGQRWG 259
Query: 534 FPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPS 593
P Y WE + ++ +++W ARL + + F RIDH GF WE+P T + G++
Sbjct: 260 NPLYRWEVLEEEGFSFWIARLRKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRW--- 316
Query: 594 IPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFG 627
+ E+L F R+ + R+ L E G
Sbjct: 317 VKAPGEKL-------FARIQEAFGRIPILAEDLG 343
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 16/175 (9%)
Query: 763 CGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFG-IPSQY--NYMTVCAPSCHDCS 819
EDLG+I V + + GL G+++ + + G+E +P Y + V HD
Sbjct: 338 LAEDLGVITPEVEALRDRFGLPGMKVLQFAFDNGMENPFLPHNYPEHGRVVVYTGTHDND 397
Query: 820 TLRAWWXXXXXXXXXFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLA 879
T W+ F K + + + ++ ++R + S + A++P+QD+LA
Sbjct: 398 TTLGWYRTATPHERDFLKRYLADWGITFREEA-EVPWALMRLGMASRARLAVYPVQDVLA 456
Query: 880 LKEDYTTRPATEETINDPTNPRHYWRYRVHVTLESLQKDKELKTTVKDLVCASGR 934
L +E +N P P W +R L + +E + L A+GR
Sbjct: 457 L--------GSEARMNYPGRPSGNWAWR----LRPGEIKEEHGERLLSLAEATGR 499
>pdb|1CWY|A Chain A, Crystal Structure Of Amylomaltase From Thermus Aquaticus,
A Glycosyltransferase Catalysing The Production Of Large
Cyclic Glucans
pdb|1ESW|A Chain A, X-Ray Structure Of Acarbose Bound To Amylomaltase From
Thermus Aquaticus. Implications For The Synthesis Of
Large Cyclic Glucans
Length = 500
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 127/293 (43%), Gaps = 23/293 (7%)
Query: 307 ESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMPEDIKKEIEKA 366
E+G Q+LP+ T DS PY S S FA +P + ++ L+E+ +
Sbjct: 38 EAGGRYWQVLPLGPTGYG----DS-PYQSFSAFAGNPYLIDLRPLAER------GYVRLE 86
Query: 367 KVQLDKKDVDYEATLATKLAIARKVFN--QEKDLILNSSAFQNFFSENEDWLKPYAAFCF 424
+ VDY A K ++ F +EK AF F WL+ YA F
Sbjct: 87 DPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLEDYALFMA 146
Query: 425 LRDFFDTSDHSQWGRFSHYSKDKLAKLISE-DSLHYDIIRFHYYVQFHLHIQLSEAAEYA 483
L+ W R+ + + K + E S + + FH + Q+ Q A
Sbjct: 147 LKG---AHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEA 203
Query: 484 RKKGVVLKGDLPIGVDRNSVDTWVYPNLF------RMNTSTGAPPDYFDKNGQNWGFPTY 537
G+ + GD+PI V +S + W +P F R G PPDYF + GQ WG P Y
Sbjct: 204 EALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRPTVVAGVPPDYFSETGQRWGNPLY 263
Query: 538 NWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKF 590
W+ + ++ +++W RL + + F RIDH GF WE+P T + G++
Sbjct: 264 RWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRW 316
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 758 SDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFG-IPSQY--NYMTVCAPS 814
++ EDLG+I V + + GL G+++ + + G+E +P Y + V
Sbjct: 333 GEVPVLAEDLGVITPEVEALRDRFGLPGMKVLQFAFDDGMENPFLPHNYPAHGRVVVYTG 392
Query: 815 CHDCSTLRAWWXXXXXXXXXFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPL 874
HD T W+ F + + + ++ ++ ++S + A++P+
Sbjct: 393 THDNDTTLGWYRTATPHEKAFMARYLADWGITFREE-EEVPWALMHLGMKSVARLAVYPV 451
Query: 875 QDLLALKEDYTTRPATEETINDPTNPRHYWRYRV 908
QD+LAL +E +N P P W +R+
Sbjct: 452 QDVLAL--------GSEARMNYPGRPSGNWAWRL 477
>pdb|2OWC|A Chain A, Structure Of A Covalent Intermediate In Thermus
Thermophilus Amylomaltase
pdb|2OWW|A Chain A, Covalent Intermediate In Amylomaltase In Complex With The
Acceptor Analog 4-Deoxyglucose
pdb|2OWX|A Chain A, Thermus Thermophilus Amylomaltase At Ph 5.6
Length = 502
Score = 116 bits (290), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 127/293 (43%), Gaps = 23/293 (7%)
Query: 307 ESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMPEDIKKEIEKA 366
E+G Q+LP+ T DS PY S S FA +P + ++ L+E+ +
Sbjct: 41 EAGGRYWQVLPLGPTGYG----DS-PYQSFSAFAGNPYLIDLRPLAER------GYVRLE 89
Query: 367 KVQLDKKDVDYEATLATKLAIARKVFN--QEKDLILNSSAFQNFFSENEDWLKPYAAFCF 424
+ VDY A K ++ F +EK AF F WL+ YA F
Sbjct: 90 DPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLEDYALFMA 149
Query: 425 LRDFFDTSDHSQWGRFSHYSKDKLAKLISE-DSLHYDIIRFHYYVQFHLHIQLSEAAEYA 483
L+ W R+ + + K + E S + + FH + Q+ Q A
Sbjct: 150 LKG---AHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEA 206
Query: 484 RKKGVVLKGDLPIGVDRNSVDTWVYPNLF------RMNTSTGAPPDYFDKNGQNWGFPTY 537
G+ + GD+PI V +S + W +P F R G PPDYF + GQ WG P Y
Sbjct: 207 EALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRPTVVAGVPPDYFSETGQRWGNPLY 266
Query: 538 NWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKF 590
W+ + ++ +++W RL + + F RIDH GF WE+P T + G++
Sbjct: 267 RWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRW 319
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 62/153 (40%), Gaps = 11/153 (7%)
Query: 758 SDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQY--NYMTVCAPSC 815
++ EDLG+I V + + GL G+++ + + +P Y + V
Sbjct: 336 GEVPVLAEDLGVITPEVEALRDRFGLPGMKVLQFAFDXMENPFLPHNYPAHGRVVVYTGT 395
Query: 816 HDCSTLRAWWXXXXXXXXXFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQ 875
HD T W+ F + + + ++ ++ ++S + A++P+Q
Sbjct: 396 HDNDTTLGWYRTATPHEKAFMARYLADWGITFREE-EEVPWALMHLGMKSVARLAVYPVQ 454
Query: 876 DLLALKEDYTTRPATEETINDPTNPRHYWRYRV 908
D+LAL +E +N P P W +R+
Sbjct: 455 DVLAL--------GSEARMNYPGRPSGNWAWRL 479
>pdb|1FP8|A Chain A, Structure Of The Amylomaltase From Thermus Thermophilus
Hb8 In Space Group P21212
pdb|1FP9|A Chain A, Structure Of Amylomaltase From Thermus Thermophilus Hb8 In
Space Group C2
Length = 500
Score = 116 bits (290), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 127/293 (43%), Gaps = 23/293 (7%)
Query: 307 ESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMPEDIKKEIEKA 366
E+G Q+LP+ T DS PY S S FA +P + ++ L+E+ +
Sbjct: 38 EAGGRYWQVLPLGPTGYG----DS-PYQSFSAFAGNPYLIDLRPLAER------GYVRLE 86
Query: 367 KVQLDKKDVDYEATLATKLAIARKVFN--QEKDLILNSSAFQNFFSENEDWLKPYAAFCF 424
+ VDY A K ++ F +EK AF F WL+ YA F
Sbjct: 87 DPGFPQGRVDYGLLYAWKWPALKEAFRGFKEKASPEEREAFAAFREREAWWLEDYALFMA 146
Query: 425 LRDFFDTSDHSQWGRFSHYSKDKLAKLISE-DSLHYDIIRFHYYVQFHLHIQLSEAAEYA 483
L+ W R+ + + K + E S + + FH + Q+ Q A
Sbjct: 147 LKG---AHGGLPWNRWPLPLRKREEKALREAKSALAEEVAFHAFTQWLFFRQWGALKAEA 203
Query: 484 RKKGVVLKGDLPIGVDRNSVDTWVYPNLF------RMNTSTGAPPDYFDKNGQNWGFPTY 537
G+ + GD+PI V +S + W +P F R G PPDYF + GQ WG P Y
Sbjct: 204 EALGIRIIGDMPIFVAEDSAEVWAHPEWFHLDEEGRPTVVAGVPPDYFSETGQRWGNPLY 263
Query: 538 NWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKF 590
W+ + ++ +++W RL + + F RIDH GF WE+P T + G++
Sbjct: 264 RWDVLEREGFSFWIRRLEKALELFHLVRIDHFRGFEAYWEIPASCPTAVEGRW 316
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 12/154 (7%)
Query: 758 SDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFG-IPSQY--NYMTVCAPS 814
++ EDLG+I V + + GL G+++ + + G+E +P Y + V
Sbjct: 333 GEVPVLAEDLGVITPEVEALRDRFGLPGMKVLQFAFDDGMENPFLPHNYPAHGRVVVYTG 392
Query: 815 CHDCSTLRAWWXXXXXXXXXFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPL 874
HD T W+ F + + + ++ ++ ++S + A++P+
Sbjct: 393 THDNDTTLGWYRTATPHEKAFMARYLADWGITFREE-EEVPWALMHLGMKSVARLAVYPV 451
Query: 875 QDLLALKEDYTTRPATEETINDPTNPRHYWRYRV 908
QD+LAL +E +N P P W +R+
Sbjct: 452 QDVLAL--------GSEARMNYPGRPSGNWAWRL 477
>pdb|1X1N|A Chain A, Structure Determination And Refinement At 1.8 A Resolution
Of Disproportionating Enzyme From Potato
Length = 524
Score = 112 bits (281), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 91/332 (27%), Positives = 141/332 (42%), Gaps = 28/332 (8%)
Query: 288 ADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLR 347
DLG F +DW +G L Q+LP+ R D PYS + L +
Sbjct: 44 GDLGPQAFK----FLDWLHLAGCSLWQVLPLVPPG-KRGNEDGSPYSGQDANCGNTLLIS 98
Query: 348 VQALSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAI----ARKVFNQEKDLILNSS 403
+ E++ +D ++E+ L V+Y K + A+++ + E +L
Sbjct: 99 L----EELVDDGLLKMEELPEPLPTDRVNYSTISEIKDPLITKAAKRLLSSEGEL---KD 151
Query: 404 AFQNFFSENE--DWLKPYAAFCFLRDFFDTSDHSQWGRFSHYSKDKLAKLISEDSLHYDI 461
+NF + WL+ A F + + +T W LA L D
Sbjct: 152 QLENFRRDPNISSWLEDAAYFAAIDNSVNTISWYDWPE--PLKNRHLAALEEVYQSEKDF 209
Query: 462 IRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTS---- 517
I QF Q + +YAR KG+ + GD+PI V +S D W F +N
Sbjct: 210 IDIFIAQQFLFQRQWKKVRDYARSKGISIMGDMPIYVGYHSADVWANKKQFLLNRKGFPL 269
Query: 518 --TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRI 575
+G PPD F + GQ WG P Y+W+ M KD ++WW R+ + + F +RIDH GF
Sbjct: 270 IVSGVPPDAFSETGQLWGSPLYDWKAMEKDGFSWWVRRIQRATDLFDEFRIDHFRGFAGF 329
Query: 576 WELPEHAMTGLIGKFR--PSIPLSQEELEREG 605
W +P ++G+++ P PL L+ G
Sbjct: 330 WAVPSEEKIAILGRWKVGPGKPLFDAILQAVG 361
Score = 37.7 bits (86), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 65/177 (36%), Gaps = 24/177 (13%)
Query: 763 CGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFG-IPSQYNYMTVCAPSCHDCSTL 821
EDLG+I V + + + G+ + + E +P + V HD T+
Sbjct: 366 IAEDLGVITEDVVQLRKSIEAPGMAVLQFAFGSDAENPHLPHNHEQNQVVYTGTHDNDTI 425
Query: 822 RAWW----XXXXXXXXXFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDL 877
R WW + N+ +I+ ++ V S + AI P+QD+
Sbjct: 426 RGWWDTLPQEEKSNVLKYLSNIEEE----------EISRGLIEGAVSSVARIAIIPMQDV 475
Query: 878 LALKEDYTTRPATEETINDPTNPRHYWRYRVHVTLESLQKDKELKTTVKDLVCASGR 934
L L D +N P W +R+ + D E K ++D++ GR
Sbjct: 476 LGLGSD--------SRMNIPATQFGNWSWRIPSSTSFDNLDAEAK-KLRDILATYGR 523
>pdb|2VN4|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea
Jecorina
pdb|2VN7|A Chain A, Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea
Jecorina
Length = 599
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 5 GLFSGTKSSKPLTMSVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPV-H 63
G+ SGT + + S+ V F T +GQ++ V G+ LG+W L V +
Sbjct: 479 GVPSGTPYTPLPCATPTSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNY 538
Query: 64 QDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGKKRKLLLHETIKDGEVVELHDL 123
D+ +W G++ + G EY Y V + + WE + +VV+ D
Sbjct: 539 ADNHPLWIGTVNLEAGDVVEYKYINV-GQDGSVTWESDPNHTYTVPAVACVTQVVK-EDT 596
Query: 124 WQT 126
WQ+
Sbjct: 597 WQS 599
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 166 SVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKL---SYA-GESVWEADCVIQRG 221
SV V F + + + +V V G+ + LG W + L +YA +W ++ G
Sbjct: 496 SVAVTFHELV-STQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAG 554
Query: 222 DFPIKYKYCKSGKTGNISLETGANRNLNV 250
D ++YKY G+ G+++ E+ N V
Sbjct: 555 DV-VEYKYINVGQDGSVTWESDPNHTYTV 582
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 37.0 bits (84), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 164 EDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQ-------NGLKLSYAGESVWEADC 216
D V VRF + ++Y++G+ LG W N + SY W D
Sbjct: 577 NDQVSVRFVVNNATTNLGQNIYIVGNVYELGNWDTSKAIGPMFNQVVYSYP---TWYIDV 633
Query: 217 VIQRGDFPIKYKYCKSGKTGNISLETGANR 246
+ G I++K+ K GN++ E+G+N
Sbjct: 634 SVPEGK-TIEFKFIKKDSQGNVTWESGSNH 662
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 33 THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQD---DELIWSGSIAVPIGFSCEYSYYVV 89
T+ GQ++ + G+ LG+WD K + P+ W ++VP G + E+ +
Sbjct: 591 TNLGQNIYIVGNVYELGNWDTSKA--IGPMFNQVVYSYPTWYIDVSVPEGKTIEFKFIKK 648
Query: 90 DDRKNLLRWEMGKKR 104
D + N + WE G
Sbjct: 649 DSQGN-VTWESGSNH 662
>pdb|2Z0B|A Chain A, Crystal Structure Of Cbm20 Domain Of Human Putative
Glycerophosphodiester Phosphodiesterase 5 (Kiaa1434)
pdb|2Z0B|B Chain B, Crystal Structure Of Cbm20 Domain Of Human Putative
Glycerophosphodiester Phosphodiesterase 5 (Kiaa1434)
pdb|2Z0B|C Chain C, Crystal Structure Of Cbm20 Domain Of Human Putative
Glycerophosphodiester Phosphodiesterase 5 (Kiaa1434)
pdb|2Z0B|D Chain D, Crystal Structure Of Cbm20 Domain Of Human Putative
Glycerophosphodiester Phosphodiesterase 5 (Kiaa1434)
pdb|2Z0B|E Chain E, Crystal Structure Of Cbm20 Domain Of Human Putative
Glycerophosphodiester Phosphodiesterase 5 (Kiaa1434)
pdb|2Z0B|F Chain F, Crystal Structure Of Cbm20 Domain Of Human Putative
Glycerophosphodiester Phosphodiesterase 5 (Kiaa1434)
Length = 131
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 36 GQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDE-LIWSGSIAVPIGFSCEYSYY 87
G+ +CGS LG+W+ + L P + E +W +I + G S +Y Y+
Sbjct: 22 GEVFAICGSCDALGNWNPQNAVALLPENDTGESXLWKATIVLSRGVSVQYRYF 74
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 186 VIGSTSMLGQWKLQNGLKL---SYAGES-VWEADCVIQRGDFPIKYKYCK 231
+ GS LG W QN + L + GES +W+A V+ RG ++Y+Y K
Sbjct: 27 ICGSCDALGNWNPQNAVALLPENDTGESXLWKATIVLSRG-VSVQYRYFK 75
>pdb|1AC0|A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With
Cyclodextrin, Nmr, Minimized Average Structure
pdb|1KUL|A Chain A, Glucoamylase, Granular Starch-Binding Domain, Nmr, 5
Structures
pdb|1KUM|A Chain A, Glucoamylase, Granular Starch-Binding Domain, Nmr,
Minimized Average Structure
Length = 108
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 183 SVYVIGSTSMLGQWKLQNGLKLS----YAGESVWEADCVIQRGDFPIKYKYCKSGKTGNI 238
++Y++GS S LG W+ +G+ LS + + +W + G+ +YK+ + ++
Sbjct: 22 NIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGE-SFEYKFIRIESDDSV 80
Query: 239 SLETGANRNLNV 250
E+ NR V
Sbjct: 81 EWESDPNREYTV 92
>pdb|1ACZ|A Chain A, Glucoamylase, Granular Starch-Binding Domain Complex With
Cyclodextrin, Nmr, 5 Structures
Length = 108
Score = 34.3 bits (77), Expect = 0.37, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 183 SVYVIGSTSMLGQWKLQNGLKLS----YAGESVWEADCVIQRGDFPIKYKYCKSGKTGNI 238
++Y++GS S LG W+ +G+ LS + + +W + G+ +YK+ + ++
Sbjct: 22 NIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGE-SFEYKFIRIESDDSV 80
Query: 239 SLETGANRNLNV 250
E+ NR V
Sbjct: 81 EWESDPNREYTV 92
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQR 220
D V VRF I +V++ G+ S LG W N + Y W D +
Sbjct: 585 DQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVPA 644
Query: 221 GDFPIKYKYCKSGKTGNISLETGANR 246
G I++K+ K + ++ E GANR
Sbjct: 645 GQ-TIEFKFLKK-QGSTVTWEGGANR 668
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQR 220
D V VRF I +V++ G+ S LG W N + Y W D +
Sbjct: 585 DQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVPA 644
Query: 221 GDFPIKYKYCKSGKTGNISLETGANR 246
G I++K+ K + ++ E GANR
Sbjct: 645 GQ-TIEFKFLKK-QGSTVTWEGGANR 668
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQR 220
D V VRF I +V++ G+ S LG W N + Y W D +
Sbjct: 585 DQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVPA 644
Query: 221 GDFPIKYKYCKSGKTGNISLETGANR 246
G I++K+ K + ++ E GANR
Sbjct: 645 GQ-TIEFKFLKK-QGSTVTWEGGANR 668
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQR 220
D V VRF I +V++ G+ S LG W N + Y W D +
Sbjct: 585 DQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVPA 644
Query: 221 GDFPIKYKYCKSGKTGNISLETGANR 246
G I++K+ K + ++ E GANR
Sbjct: 645 GQ-TIEFKFLKK-QGSTVTWEGGANR 668
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQR 220
D V VRF I +V++ G+ S LG W N + Y W D +
Sbjct: 585 DQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVPA 644
Query: 221 GDFPIKYKYCKSGKTGNISLETGANR 246
G I++K+ K + ++ E GANR
Sbjct: 645 GQ-TIEFKFLKK-QGSTVTWEGGANR 668
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQR 220
D V VRF I +V++ G+ S LG W N + Y W D +
Sbjct: 585 DQVTVRFVINNATTALGQNVFLTGNVSELGNWDPNNAIGPMYNQVVYQYPTWYYDVSVPA 644
Query: 221 GDFPIKYKYCKSGKTGNISLETGANR 246
G I++K+ K + ++ E GANR
Sbjct: 645 GQ-TIEFKFLKK-QGSTVTWEGGANR 668
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N)
MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5
Length = 516
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MANMGLFSGTKSSKPLTMSVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKG--FL 58
M N L K +T ++++ VK +P T G ++ + G+ LGSWD K+ L
Sbjct: 402 MYNNSLMGKFKDLLGVTPVMQTIVVK-NVP--TTIGDTVYITGNRAELGSWDTKQYPIQL 458
Query: 59 LSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99
H +D W G++ +P + E+ ++ + W+
Sbjct: 459 YYDSHSND---WRGNVVLPAERNIEFKAFIKSKDGTVKSWQ 496
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 1 MANMGLFSGTKSSKPLTMSVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLS 60
M N L K +T ++++ VK +P T G ++ + G+ LGSWD K+ + +
Sbjct: 402 MYNNSLMGKFKDLLGVTPVMQTIVVK-NVP--TTIGDTVYITGNRAELGSWDTKQ-YPIQ 457
Query: 61 PVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99
+ W G++ +P + E+ ++ + W+
Sbjct: 458 LYYDSHSNDWRGNVVLPAERNIEFKAFIKSKDGTVKSWQ 496
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS
Cereus Beta-Amylase At Ph 4.6
Length = 516
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 1 MANMGLFSGTKSSKPLTMSVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLS 60
M N L K +T ++++ VK +P T G ++ + G+ LGSWD K+ + +
Sbjct: 402 MYNNSLMGKFKDLLGVTPVMQTIVVK-NVP--TTIGDTVYITGNRAELGSWDTKQ-YPIQ 457
Query: 61 PVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99
+ W G++ +P + E+ ++ + W+
Sbjct: 458 LYYDSHSNDWRGNVVLPAERNIEFKAFIKSKDGTVKSWQ 496
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed
With Maltopentaose
Length = 516
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 1 MANMGLFSGTKSSKPLTMSVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLS 60
M N L K +T ++++ VK +P T G ++ + G+ LGSWD K+ + +
Sbjct: 402 MYNNSLMGKFKDLLGVTPVMQTIVVK-NVP--TTIGDTVYITGNRAELGSWDTKQ-YPIQ 457
Query: 61 PVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99
+ W G++ +P + E+ ++ + W+
Sbjct: 458 LYYDSHSNDWRGNVVLPAERNIEFKAFIKSKDGTVKSWQ 496
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form
pdb|1B9Z|A Chain A, Bacillus Cereus Beta-Amylase Complexed With Maltose
pdb|5BCA|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|5BCA|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides
pdb|1J18|A Chain A, Crystal Structure Of A Beta-Amylase From Bacillus Cereus
Var. Mycoides Cocrystallized With Maltose
pdb|1J0Y|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Y|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Glucose
pdb|1J0Z|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J0Z|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Maltose
pdb|1J10|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J10|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Ggx
pdb|1J11|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J11|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Epg
pdb|1J12|A Chain A, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|B Chain B, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|C Chain C, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1J12|D Chain D, Beta-Amylase From Bacillus Cereus Var. Mycoides In Complex
With Alpha-Ebg
pdb|1VEM|A Chain A, Crystal Structure Analysis Of Bacillus Cereus Beta-amylase
At The Optimum Ph (6.5)
Length = 516
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 1 MANMGLFSGTKSSKPLTMSVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLS 60
M N L K +T ++++ VK +P T G ++ + G+ LGSWD K+ + +
Sbjct: 402 MYNNSLMGKFKDLLGVTPVMQTIVVK-NVP--TTIGDTVYITGNRAELGSWDTKQ-YPIQ 457
Query: 61 PVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99
+ W G++ +P + E+ ++ + W+
Sbjct: 458 LYYDSHSNDWRGNVVLPAERNIEFKAFIKSKDGTVKSWQ 496
>pdb|3NQP|A Chain A, Crystal Structure Of A Susd Superfamily Protein (Bf1802)
From Bacteroides Fragilis Nctc 9343 At 1.90 A Resolution
pdb|3NQP|B Chain B, Crystal Structure Of A Susd Superfamily Protein (Bf1802)
From Bacteroides Fragilis Nctc 9343 At 1.90 A Resolution
Length = 514
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 14/128 (10%)
Query: 158 QNKLEQEDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWK-----LQNGLKLSYAGESVW 212
+NK E +RF Y +G+ S +++ + L + G +
Sbjct: 258 KNKANDEIIFAIRFLEGEATNSNGTFTYNVGTGSTKNRYQANGEVFGDALDIQNTGNQTY 317
Query: 213 EADCVI--------QRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSD 264
E + + R + Y K GKTG +SL G + N+ + N Q ++ D
Sbjct: 318 EYNKAVYQNFDDADTRKEATFIASYNKDGKTGELSL-YGTHVRKNIGYVNAQGARVYCGD 376
Query: 265 GMMREMPW 272
+ +PW
Sbjct: 377 YIFYRLPW 384
>pdb|2PWJ|A Chain A, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|B Chain B, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|C Chain C, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|D Chain D, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|E Chain E, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
pdb|2PWJ|F Chain F, Structure Of A Mitochondrial Type Ii Peroxiredoxin From
Pisum Sativum
Length = 171
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 129 DALPFRSAFKNVIFRRSFSLDIERSDGLIQNKLEQEDSVLVRFKICIPNIEEDAS-VYVI 187
DA+ F F F +S L + S GL+ + E+ + +V K+ N+EE S V V
Sbjct: 104 DAIEFYGDFDGS-FHKSLELTTDLSAGLLGIRSERWSAYVVDGKVKALNVEESPSDVKVS 162
Query: 188 GSTSMLGQ 195
G+ ++LGQ
Sbjct: 163 GAETILGQ 170
>pdb|1QHO|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, MaltoseACARBOSE COMPLEX
pdb|1QHP|A Chain A, Five-Domain Alpha-Amylase From Bacillus
Stearothermophilus, Maltose Complex
Length = 686
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 26/128 (20%)
Query: 6 LFSGTKSSKPLTMSVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDV--------KKGF 57
+ SGT++S TVK P T+ G + + G+ P LG+W +G
Sbjct: 576 ILSGTQTSV-------VFTVKSAPP--TNLGDKIYLTGNIPELGNWSTDTSGAVNNAQGP 626
Query: 58 LLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGKKRKLLLHETIKDGEV 117
LL+P + D W +VP G + ++ ++ + ++WE G T G
Sbjct: 627 LLAPNYPD----WFYVFSVPAGKTIQFKFF-IKRADGTIQWENGSNHV----ATTPTGAT 677
Query: 118 VELHDLWQ 125
+ WQ
Sbjct: 678 GNITVTWQ 685
>pdb|3CA8|A Chain A, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
pdb|3CA8|B Chain B, Crystal Structure Of Escherichia Coli Ydcf, An
S-Adenosyl-L-Methionine Utilizing Enzyme
Length = 266
Score = 30.8 bits (68), Expect = 3.8, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 187 IGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGD--FPIKYKYCKSGKTGNISL 240
I + +++GQW Q+ ++GE ++ADCVI G+ P CK + I L
Sbjct: 14 IDAINVIGQWLAQD----DFSGEVPYQADCVILAGNAVMPTIDAACKIARDQQIPL 65
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 146 FSLDIERSDGLIQNKLEQEDSVLVRFKICIPNIEEDAS------VYVIGSTSMLGQWKLQ 199
+++ ++ S G N + +L +IC+ + +AS VY+ G+ + LG W
Sbjct: 558 YNISLKTSSGATSNTYNNIN-ILTGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTS 616
Query: 200 NGL-----KLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGN-ISLETGANRNLNV 250
+ ++ Y W D + G I++K+ K K GN I+ E G+N V
Sbjct: 617 KAIGPMFNQVVYQ-YPTWYYDVSVPAGT-TIQFKFIK--KNGNTITWEGGSNHTYTV 669
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 33 THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQD---DELIWSGSIAVPIGFSCEYSYYVV 89
T +G+++ + G+ LG+WD K + P+ W ++VP G + ++ + +
Sbjct: 595 TVYGENVYLTGNVAELGNWDTSKA--IGPMFNQVVYQYPTWYYDVSVPAGTTIQFKF--I 650
Query: 90 DDRKNLLRWEMGKKRKLLL 108
N + WE G +
Sbjct: 651 KKNGNTITWEGGSNHTYTV 669
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 17/117 (14%)
Query: 146 FSLDIERSDGLIQNKLEQEDSVLVRFKICIPNIEEDAS------VYVIGSTSMLGQWKLQ 199
+++ ++ S G N + +L +IC+ + +AS VY+ G+ + LG W
Sbjct: 558 YNISLKTSSGATSNTYNNIN-ILTGNQICVRFVVNNASTVYGENVYLTGNVAELGNWDTS 616
Query: 200 NGL-----KLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGN-ISLETGANRNLNV 250
+ ++ Y W D + G I++K+ K K GN I+ E G+N V
Sbjct: 617 KAIGPMFNQVVYQ-YPTWYYDVSVPAGT-TIQFKFIK--KNGNTITWEGGSNHTYTV 669
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 33 THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQD---DELIWSGSIAVPIGFSCEYSYYVV 89
T +G+++ + G+ LG+WD K + P+ W ++VP G + ++ + +
Sbjct: 595 TVYGENVYLTGNVAELGNWDTSKA--IGPMFNQVVYQYPTWYYDVSVPAGTTIQFKF--I 650
Query: 90 DDRKNLLRWEMGKKRKLLL 108
N + WE G +
Sbjct: 651 KKNGNTITWEGGSNHTYTV 669
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 291 GVGEFLDLKLLVDWAVESGFHLVQLLPI----NDTSVNRMWWDSY-PYSSLSVFALHPLY 345
G + L +++++ + G ++LLP+ ++ + RM +Y Y+ +++FALHP Y
Sbjct: 174 GTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAY 233
Query: 346 LRVQALSEKMPEDIKKEIEKAKVQL 370
+ D K + KA +++
Sbjct: 234 ACSPETALDEFRDAIKALHKAGIEV 258
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,933,093
Number of Sequences: 62578
Number of extensions: 1371230
Number of successful extensions: 3462
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3419
Number of HSP's gapped (non-prelim): 53
length of query: 978
length of database: 14,973,337
effective HSP length: 108
effective length of query: 870
effective length of database: 8,214,913
effective search space: 7146974310
effective search space used: 7146974310
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)