Query 002027
Match_columns 978
No_of_seqs 342 out of 2081
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:51:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002027.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002027hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02950 4-alpha-glucanotransf 100.0 3E-222 6E-227 2013.0 83.6 902 20-925 6-909 (909)
2 PLN03236 4-alpha-glucanotransf 100.0 2E-183 4E-188 1621.0 55.9 715 209-936 2-743 (745)
3 PRK14508 4-alpha-glucanotransf 100.0 1E-128 2E-133 1128.9 46.7 485 271-935 3-497 (497)
4 PLN02635 disproportionating en 100.0 3E-127 5E-132 1116.1 42.9 488 271-936 26-527 (538)
5 PF02446 Glyco_hydro_77: 4-alp 100.0 1E-126 2E-131 1118.4 30.8 491 279-928 1-495 (496)
6 PRK11052 malQ 4-alpha-glucanot 100.0 2E-123 4E-128 1115.4 49.7 543 216-935 98-692 (695)
7 TIGR00217 malQ 4-alpha-glucano 100.0 3E-120 6E-125 1060.0 41.7 483 272-934 13-513 (513)
8 PRK14507 putative bifunctional 100.0 4E-117 9E-122 1116.6 48.4 542 218-936 129-725 (1693)
9 PRK14510 putative bifunctional 100.0 2E-117 5E-122 1120.5 44.9 484 272-935 722-1221(1221)
10 COG1640 MalQ 4-alpha-glucanotr 100.0 5E-114 1E-118 989.8 38.2 496 272-931 11-515 (520)
11 cd05815 CBM20_DPE2_repeat1 Dis 99.8 1.3E-19 2.7E-24 170.2 11.8 101 24-124 1-101 (101)
12 PF00686 CBM_20: Starch bindin 99.8 1.3E-19 2.9E-24 168.4 9.2 88 166-255 1-92 (96)
13 PF00686 CBM_20: Starch bindin 99.8 3.8E-19 8.2E-24 165.4 9.6 89 22-111 1-90 (96)
14 cd05816 CBM20_DPE2_repeat2 Dis 99.8 1.3E-18 2.7E-23 162.9 11.1 97 168-264 1-98 (99)
15 cd05808 CBM20_alpha_amylase Al 99.8 2E-18 4.4E-23 159.8 11.6 95 23-125 1-95 (95)
16 cd05811 CBM20_glucoamylase Glu 99.8 2.9E-18 6.2E-23 162.3 12.5 103 19-124 3-106 (106)
17 cd05807 CBM20_CGTase CGTase, C 99.8 3.6E-18 7.7E-23 160.4 10.3 90 165-255 1-94 (101)
18 cd05808 CBM20_alpha_amylase Al 99.7 2.5E-17 5.5E-22 152.5 10.9 85 167-253 1-85 (95)
19 cd05467 CBM20 The family 20 ca 99.7 3.4E-17 7.3E-22 151.6 11.7 92 25-124 2-96 (96)
20 cd05820 CBM20_novamyl Novamyl 99.7 2.7E-17 5.8E-22 155.1 10.4 89 166-255 2-94 (103)
21 cd05811 CBM20_glucoamylase Glu 99.7 4.5E-17 9.6E-22 154.2 11.4 90 164-255 4-97 (106)
22 cd05810 CBM20_alpha_MTH Glucan 99.7 3.1E-17 6.7E-22 153.1 10.0 88 167-255 1-91 (97)
23 cd05807 CBM20_CGTase CGTase, C 99.7 5.5E-17 1.2E-21 152.4 10.9 99 21-124 1-101 (101)
24 cd05818 CBM20_water_dikinase P 99.7 8.9E-17 1.9E-21 148.6 11.7 82 22-110 1-82 (92)
25 cd05817 CBM20_DSP Dual-specifi 99.7 5.5E-17 1.2E-21 152.2 10.0 83 25-110 2-85 (100)
26 cd05818 CBM20_water_dikinase P 99.7 1.5E-16 3.2E-21 147.1 10.9 84 167-255 2-85 (92)
27 cd05816 CBM20_DPE2_repeat2 Dis 99.7 2.2E-16 4.8E-21 147.8 11.6 95 24-122 1-98 (99)
28 cd05809 CBM20_beta_amylase Bet 99.7 1.7E-16 3.6E-21 148.7 9.8 86 166-252 2-90 (99)
29 cd05467 CBM20 The family 20 ca 99.7 2.2E-16 4.8E-21 146.2 10.0 84 169-253 2-87 (96)
30 cd05813 CBM20_genethonin_1 Gen 99.7 4.2E-16 9.2E-21 144.7 11.3 92 23-125 1-93 (95)
31 cd05815 CBM20_DPE2_repeat1 Dis 99.7 4.7E-16 1E-20 146.0 10.5 86 168-255 1-90 (101)
32 cd05817 CBM20_DSP Dual-specifi 99.6 4.8E-16 1E-20 145.8 9.6 82 169-252 2-85 (100)
33 cd05820 CBM20_novamyl Novamyl 99.6 7.7E-16 1.7E-20 145.2 10.9 96 22-125 2-102 (103)
34 cd05810 CBM20_alpha_MTH Glucan 99.6 1E-15 2.2E-20 142.9 9.6 86 23-111 1-89 (97)
35 cd05809 CBM20_beta_amylase Bet 99.6 2.2E-15 4.7E-20 141.1 11.0 96 22-124 2-99 (99)
36 cd05806 CBM20_laforin Laforin 99.6 7.8E-15 1.7E-19 139.8 10.2 85 167-252 1-97 (112)
37 cd05813 CBM20_genethonin_1 Gen 99.6 8.8E-15 1.9E-19 135.9 9.6 80 167-249 1-80 (95)
38 cd05806 CBM20_laforin Laforin 99.5 1.2E-13 2.5E-18 131.8 12.2 86 23-110 1-97 (112)
39 cd05814 CBM20_Prei4 Prei4, N-t 99.5 9E-14 1.9E-18 134.8 9.2 86 23-109 1-95 (120)
40 cd05814 CBM20_Prei4 Prei4, N-t 99.4 2.4E-13 5.3E-18 131.7 8.4 82 168-250 2-94 (120)
41 PLN02950 4-alpha-glucanotransf 99.4 2.2E-12 4.9E-17 160.9 12.3 89 18-110 148-238 (909)
42 PRK05402 glycogen branching en 98.1 0.00061 1.3E-08 85.2 25.8 271 24-351 29-317 (726)
43 PRK14705 glycogen branching en 97.7 0.0036 7.8E-08 81.3 24.1 137 167-320 638-790 (1224)
44 PRK12313 glycogen branching en 97.2 0.01 2.2E-07 73.4 18.5 170 167-351 38-222 (633)
45 PRK12568 glycogen branching en 97.0 0.024 5.2E-07 70.5 18.4 169 167-351 138-321 (730)
46 COG0296 GlgB 1,4-alpha-glucan 96.8 0.022 4.8E-07 69.4 15.2 158 167-339 36-210 (628)
47 PLN02447 1,4-alpha-glucan-bran 96.7 0.043 9.3E-07 68.5 17.6 171 168-351 115-302 (758)
48 PRK14706 glycogen branching en 96.6 0.057 1.2E-06 66.8 17.7 168 168-351 39-219 (639)
49 cd02859 AMPKbeta_GBD_like AMP- 96.2 0.015 3.3E-07 52.4 7.2 53 23-88 2-54 (79)
50 cd02861 E_set_proteins_like E 96.2 0.016 3.4E-07 52.5 7.3 54 23-88 2-55 (82)
51 cd02861 E_set_proteins_like E 96.2 0.015 3.3E-07 52.6 7.0 54 167-231 2-55 (82)
52 TIGR01515 branching_enzym alph 96.0 0.17 3.7E-06 62.6 17.3 164 168-351 29-208 (613)
53 cd02859 AMPKbeta_GBD_like AMP- 96.0 0.033 7.2E-07 50.3 8.3 61 167-244 2-62 (79)
54 TIGR02402 trehalose_TreZ malto 95.8 0.17 3.7E-06 61.6 16.0 154 169-351 1-162 (542)
55 TIGR02104 pulA_typeI pullulana 94.6 0.56 1.2E-05 58.0 15.4 165 168-346 20-218 (605)
56 KOG2421 Predicted starch-bindi 91.5 0.2 4.2E-06 59.0 4.5 68 23-90 44-116 (417)
57 PLN02316 synthase/transferase 91.3 8 0.00017 50.5 18.8 258 20-320 328-632 (1036)
58 cd02854 Glycogen_branching_enz 91.1 1.4 3.1E-05 41.5 9.1 65 167-238 5-74 (99)
59 smart00642 Aamy Alpha-amylase 90.6 0.64 1.4E-05 47.9 6.8 59 291-351 14-72 (166)
60 COG1640 MalQ 4-alpha-glucanotr 86.0 0.13 2.7E-06 61.7 -2.1 95 488-582 69-178 (520)
61 PRK03705 glycogen debranching 85.4 14 0.0003 46.4 14.9 56 292-347 173-235 (658)
62 cd02858 Esterase_N_term Estera 85.2 2.9 6.3E-05 38.2 6.8 55 23-88 6-60 (85)
63 PF02922 CBM_48: Carbohydrate- 85.0 2.5 5.4E-05 38.0 6.3 62 167-236 11-75 (85)
64 TIGR02403 trehalose_treC alpha 84.6 1.9 4.1E-05 52.7 6.9 64 283-351 14-77 (543)
65 TIGR02102 pullulan_Gpos pullul 84.6 23 0.00051 46.8 16.9 145 169-320 329-504 (1111)
66 PLN02960 alpha-amylase 84.6 16 0.00035 46.8 14.9 57 291-351 411-468 (897)
67 PF00128 Alpha-amylase: Alpha 84.4 1.7 3.6E-05 47.7 5.9 28 293-320 1-28 (316)
68 PF03423 CBM_25: Carbohydrate 83.4 5.4 0.00012 36.8 7.8 78 166-250 3-84 (87)
69 KOG2421 Predicted starch-bindi 83.1 1.3 2.8E-05 52.3 4.5 68 167-235 44-118 (417)
70 PRK10785 maltodextrin glucosid 83.0 25 0.00055 43.6 15.8 54 292-351 175-228 (598)
71 cd02858 Esterase_N_term Estera 82.0 4.4 9.5E-05 37.0 6.6 55 167-231 6-60 (85)
72 TIGR02100 glgX_debranch glycog 77.4 37 0.00079 43.0 14.7 55 292-346 178-239 (688)
73 PF03423 CBM_25: Carbohydrate 77.3 14 0.0003 34.1 8.3 79 22-107 3-83 (87)
74 cd02854 Glycogen_branching_enz 76.7 11 0.00024 35.5 7.7 65 23-96 5-75 (99)
75 PF02903 Alpha-amylase_N: Alph 76.0 6.3 0.00014 38.2 6.0 81 11-95 11-93 (120)
76 PF14701 hDGE_amylase: glucano 75.5 5.1 0.00011 47.3 6.1 59 282-348 11-69 (423)
77 PRK10933 trehalose-6-phosphate 75.3 5.7 0.00012 48.7 6.8 58 289-351 26-83 (551)
78 cd02688 E_set E or "early" set 74.5 13 0.00029 32.4 7.2 57 24-90 5-61 (83)
79 cd02688 E_set E or "early" set 73.6 12 0.00027 32.6 6.8 58 168-234 5-62 (83)
80 TIGR02103 pullul_strch alpha-1 72.8 26 0.00055 45.5 11.8 57 168-232 136-193 (898)
81 PRK14510 putative bifunctional 72.7 60 0.0013 43.8 15.6 60 292-351 181-249 (1221)
82 COG0708 XthA Exonuclease III [ 71.6 3.5 7.6E-05 45.6 3.4 78 486-571 141-226 (261)
83 TIGR02456 treS_nterm trehalose 71.2 7.4 0.00016 47.5 6.4 56 291-351 23-78 (539)
84 PF02922 CBM_48: Carbohydrate- 70.5 12 0.00027 33.4 6.2 62 23-93 11-75 (85)
85 TIGR02401 trehalose_TreY malto 64.2 22 0.00048 45.5 8.6 29 292-320 12-40 (825)
86 TIGR02456 treS_nterm trehalose 63.7 23 0.00049 43.4 8.5 24 474-497 76-99 (539)
87 PF00128 Alpha-amylase: Alpha 62.9 6 0.00013 43.3 3.1 95 478-574 56-175 (316)
88 PLN02361 alpha-amylase 62.8 22 0.00048 41.9 7.8 43 274-319 10-52 (401)
89 PLN03244 alpha-amylase; Provis 62.7 15 0.00032 46.6 6.5 87 473-571 440-535 (872)
90 PRK09441 cytoplasmic alpha-amy 58.7 28 0.0006 41.9 8.0 92 474-572 81-238 (479)
91 PLN02447 1,4-alpha-glucan-bran 58.7 21 0.00045 45.4 7.0 90 474-572 300-395 (758)
92 PF02903 Alpha-amylase_N: Alph 58.7 25 0.00055 34.0 6.3 71 164-240 20-95 (120)
93 TIGR01515 branching_enzym alph 58.4 26 0.00056 43.7 7.8 87 474-570 206-298 (613)
94 PRK12313 glycogen branching en 56.8 28 0.00061 43.5 7.8 91 474-570 220-312 (633)
95 COG1523 PulA Type II secretory 56.5 11 0.00023 47.4 4.0 57 293-350 195-259 (697)
96 PLN02877 alpha-amylase/limit d 55.3 1.2E+02 0.0026 39.8 13.0 58 168-232 223-280 (970)
97 PLN02316 synthase/transferase 54.4 1.1E+02 0.0025 40.4 12.7 88 161-253 325-419 (1036)
98 TIGR02403 trehalose_treC alpha 54.3 36 0.00078 41.8 8.0 23 474-496 75-97 (543)
99 PRK09505 malS alpha-amylase; R 53.7 31 0.00067 43.5 7.4 89 474-569 292-463 (683)
100 TIGR01531 glyc_debranch glycog 53.3 16 0.00034 49.0 4.8 56 283-346 122-177 (1464)
101 cd02860 Pullulanase_N_term Pul 52.9 44 0.00094 31.2 6.6 58 168-234 9-69 (100)
102 PRK14706 glycogen branching en 48.4 53 0.0011 41.2 8.2 86 474-572 217-311 (639)
103 TIGR02402 trehalose_TreZ malto 47.3 48 0.001 40.7 7.6 85 474-572 160-249 (542)
104 PRK05402 glycogen branching en 46.6 49 0.0011 42.1 7.7 66 168-246 29-95 (726)
105 cd02857 CD_pullulan_degrading_ 44.7 1.1E+02 0.0025 28.6 8.3 64 24-90 17-81 (116)
106 cd02853 MTHase_N_term Maltooli 44.5 70 0.0015 28.9 6.4 51 168-232 9-59 (85)
107 PLN00196 alpha-amylase; Provis 44.3 63 0.0014 38.6 7.7 91 473-572 91-208 (428)
108 COG0366 AmyA Glycosidases [Car 44.2 33 0.00071 40.8 5.4 57 290-351 23-79 (505)
109 PRK12568 glycogen branching en 42.4 56 0.0012 41.6 7.1 89 474-571 319-412 (730)
110 PRK10933 trehalose-6-phosphate 42.1 62 0.0013 39.9 7.4 23 474-496 81-103 (551)
111 cd02856 Glycogen_debranching_e 41.2 84 0.0018 29.5 6.6 56 169-233 11-66 (103)
112 cd02855 Glycogen_branching_enz 41.2 2.1E+02 0.0045 26.4 9.3 58 168-234 22-80 (106)
113 COG0160 GabT 4-aminobutyrate a 40.1 31 0.00067 41.3 4.2 40 476-523 245-285 (447)
114 PLN02960 alpha-amylase 38.4 65 0.0014 41.6 6.8 89 474-571 466-560 (897)
115 cd02860 Pullulanase_N_term Pul 37.2 1.2E+02 0.0026 28.1 7.0 57 24-90 9-68 (100)
116 TIGR02104 pulA_typeI pullulana 36.1 84 0.0018 39.1 7.3 22 475-496 230-251 (605)
117 PLN02784 alpha-amylase 34.1 1.4E+02 0.0031 38.6 8.7 88 474-572 568-678 (894)
118 cd02855 Glycogen_branching_enz 33.5 1.8E+02 0.0038 26.9 7.5 56 24-90 22-79 (106)
119 PF00479 G6PD_N: Glucose-6-pho 31.8 33 0.00071 36.1 2.4 25 547-571 150-177 (183)
120 PRK03705 glycogen debranching 31.5 1.2E+02 0.0026 38.3 7.6 56 168-232 20-75 (658)
121 PF14784 ECIST_Cterm: C-termin 31.4 25 0.00053 35.0 1.3 22 806-827 87-108 (126)
122 TIGR02102 pullulan_Gpos pullul 27.7 1.5E+02 0.0032 39.8 7.7 23 474-496 555-577 (1111)
123 KOG3625 Alpha amylase [Carbohy 27.4 2.3E+02 0.005 36.8 8.7 152 167-348 29-189 (1521)
124 cd02853 MTHase_N_term Maltooli 25.7 1.6E+02 0.0034 26.6 5.5 51 24-89 9-59 (85)
125 TIGR02401 trehalose_TreY malto 25.5 1.2E+02 0.0026 39.1 6.2 13 560-572 247-259 (825)
126 cd02856 Glycogen_debranching_e 25.5 1.4E+02 0.0031 27.9 5.3 55 24-89 10-65 (103)
127 KOG0471 Alpha-amylase [Carbohy 25.3 1.7E+02 0.0037 36.0 7.4 103 470-576 84-222 (545)
128 COG0296 GlgB 1,4-alpha-glucan 23.8 2.3E+02 0.005 35.6 8.0 69 23-102 36-105 (628)
129 COG2945 Predicted hydrolase of 22.5 67 0.0014 34.4 2.6 37 273-309 57-99 (210)
130 TIGR02100 glgX_debranch glycog 22.5 2.1E+02 0.0046 36.3 7.5 59 168-233 15-73 (688)
131 cd02852 Isoamylase_N_term Isoa 22.2 2.7E+02 0.0058 26.7 6.7 60 168-233 8-70 (119)
132 PRK10785 maltodextrin glucosid 21.6 97 0.0021 38.6 4.3 33 292-324 222-254 (598)
133 cd02857 CD_pullulan_degrading_ 20.8 4.2E+02 0.0092 24.7 7.7 61 169-234 18-82 (116)
134 PF14871 GHL6: Hypothetical gl 20.3 1.5E+02 0.0033 29.6 4.5 76 476-561 46-123 (132)
No 1
>PLN02950 4-alpha-glucanotransferase
Probab=100.00 E-value=2.7e-222 Score=2013.02 Aligned_cols=902 Identities=79% Similarity=1.357 Sum_probs=839.1
Q ss_pred CceEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEee
Q 002027 20 VKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99 (978)
Q Consensus 20 p~~~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE 99 (978)
+..|+|+|+|++.|.+||+|+|+||+++||+|++.+|++|++++..++++|+++|.+|.+..|+|||++++.+|++++||
T Consensus 6 ~~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~WE 85 (909)
T PLN02950 6 LKSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRWE 85 (909)
T ss_pred CCcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeeee
Confidence 46799999999999999999999999999999999999998875444578999999999989999999998889988999
Q ss_pred cCCCceEEcCCCCCCCceEEEecccCccc-cCCCCcccchhhhccccccccccccccccccccCCCCceEEEEEEEeccc
Q 002027 100 MGKKRKLLLHETIKDGEVVELHDLWQTGG-DALPFRSAFKNVIFRRSFSLDIERSDGLIQNKLEQEDSVLVRFKICIPNI 178 (978)
Q Consensus 100 ~g~NR~l~l~~~~~~g~~v~v~D~W~~~~-~~~~~ss~F~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~v~~~~~ 178 (978)
+|.||.+.+|..+..+..+++.|+|+..+ ++++++++|++|||++......++|++++...+ .++.++|+|+|+++++
T Consensus 86 ~g~NR~l~lp~~~~~~~~~~i~D~W~~~~~~~~~~~s~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~V~F~v~~~~~ 164 (909)
T PLN02950 86 AGKKRKLVLPEGLQGGELVELHDLWQKSGPEALFFRSAFKDVIFRHSWGVNTERPLGALNKPP-APDEIVVRFKIACPRL 164 (909)
T ss_pred cCCCeeEECCcccCCCceEEEEEEecCCchhhhhhHHHHhhhhcccccccccccccccccccC-CCCceeEEEEEecCcc
Confidence 99999999987433456899999999764 888999999999999876444567877665443 4778999999999988
Q ss_pred CCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCC-C
Q 002027 179 EEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQ-P 257 (978)
Q Consensus 179 ~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~-~ 257 (978)
.+||+|+|+||+++||+|++++|++|++..++.|++++++|+...+|||||++++.+|.+.||.|+||.+.+|.+... +
T Consensus 165 ~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~~~ 244 (909)
T PLN02950 165 EEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSLELGVNRELSLDSSSGKPP 244 (909)
T ss_pred CCCCeEEEEechhhcCCCCcccccccccCCCCcEEEEEEecCCCceEEEEEEEEcCCCceEEeeCCCceeecCcccCCce
Confidence 999999999999999999999999999999999999999996667999999999988999999999999999976543 4
Q ss_pred eeEEeccccccCCCccceEEeeecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccC
Q 002027 258 RYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLS 337 (978)
Q Consensus 258 ~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S 337 (978)
..++..+..++...+|+|||++|||||||+++||||||+||++|||||+++|+++|||||||||+.++++.+||||+|+|
T Consensus 245 ~~~~~~~~~~~~~~~R~~Gi~~~l~SLrS~~s~GIGDf~dl~~~id~~a~~G~~~~QilPl~~t~~~~~~~~SsPYs~~S 324 (909)
T PLN02950 245 SYIVASDGAFREMPWRGAGVAVPVFSIRSEEDVGVGEFLDLKLLVDWAVKSGLHLVQLLPVNDTSVHGMWWDSYPYSSLS 324 (909)
T ss_pred EEEecccccccCCCccceEEEEecccCCCCCCCCeeCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCCcCccc
Confidence 44556677777778999999999999999999999999999999999999999999999999999777777889999999
Q ss_pred ccccCccccChhhhcccCCHhHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhccccCc
Q 002027 338 VFALHPLYLRVQALSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLK 417 (978)
Q Consensus 338 ~falNPlyI~l~~l~~~~~~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~ 417 (978)
+||||||||||+.|++.++....+++.+++.+++.+.|||++|.++|+++|+++|+++.+......+|++|+++|+.||+
T Consensus 325 ~falNPlyI~l~~l~~~l~~~~~~~~~~~~~~~~~~~VDY~~v~~~K~~~L~~~f~~f~~~~~~~~~F~~F~~~~~~WL~ 404 (909)
T PLN02950 325 VFALHPLYLRVQALSERLPEDLKAEIQKARKQLDKKDVDYEATLATKLSIAKKVFDLEKDLTLNSSSFKKFFSENEHWLK 404 (909)
T ss_pred ccccChhhcCHHHHHhhhhhhHHHHHHHhhhccCcccccHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHhCccHHH
Confidence 99999999999999876555556677776666666889999999999999999999986543335789999999999999
Q ss_pred cccchHHHHhhcCCCCCCCCCcCCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeccccc
Q 002027 418 PYAAFCFLRDFFDTSDHSQWGRFSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIG 497 (978)
Q Consensus 418 ~yA~F~aL~~~~~~~~w~~Wp~~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpig 497 (978)
+||+||||+++|++.+|++||+++.+.+++++++....++++++|+||+|+||+|++||+++++||+++||+||||||||
T Consensus 405 ~yA~F~aL~~~~~~~~w~~Wp~~~~~~~~~~~~l~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 405 PYAAFCFLRDFFETSDHSQWGRFSDFSDEKLEKLVSPGSLHYDTICFHYYIQYHLHSQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHhCCCCcccCcccccccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeece
Confidence 99999999999999999999986555566666665556789999999999999999999999999999999999999999
Q ss_pred cCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeee
Q 002027 498 VDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWE 577 (978)
Q Consensus 498 v~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~ 577 (978)
|++||||||++|++|+++.++|||||+||++|||||+|+|||++|+++||+||++||+++++|||++||||||||||+|+
T Consensus 485 V~~dSaDvWa~p~lF~l~~~aGaPPD~Fs~~GQ~WG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~d~lRIDH~~Gf~r~W~ 564 (909)
T PLN02950 485 VDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMAKYFTAYRIDHILGFFRIWE 564 (909)
T ss_pred eCCCcHHHhcCHHHhcCCCccCCCCCcCCcccccCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCEEEEecchhhcEeeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHH
Q 002027 578 LPEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKK 657 (978)
Q Consensus 578 IP~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~ 657 (978)
||.++++|++|+|+|++|||++||+++||||++|||+|||+.++|.++||+++++|+++||++.++|.|.|||+|+||++
T Consensus 565 IP~~~~~a~~G~w~~~~~~s~~el~~~gl~~~~r~~~p~i~~~~l~~~fg~~~~~v~~~~~~~~~~~~y~~k~~~~te~~ 644 (909)
T PLN02950 565 LPAHAVTGLVGKFRPSIPLSQEELEQEGIWDFDRLSRPYIRQEFLQEKFGDRWTEIASNFLNEYQKGCYEFKEDCNTEKK 644 (909)
T ss_pred ecCCCccccCceEecCCCCCHHHHHhcCCccHhhhccccccHHHHHHHhcccHHHHHHHHHHhcCCCcEEeccccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcccccchhhhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhh
Q 002027 658 IAAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFH 737 (978)
Q Consensus 658 i~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~ 737 (978)
|++++++.++....+++.++||++|++|++|||||+|++++|+|||||.+++|+||++|++++ |++|++||+||||+
T Consensus 645 i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~~d~~~~~~f~pr~~~~~~~s~~~L~~~~---~~~~~~l~~~~~~~ 721 (909)
T PLN02950 645 IAAKLKRLAEKSWLLEEEEKIRRGLFDLLQNVVLIRDPEDPRKFYPRFNLEDTSSFQDLDDHS---KNVLKRLYYDYYFH 721 (909)
T ss_pred HHHhhccccccchhhhhHHHHHHHHHHHhhceeEEecCCCCCCcccceecccccchhhcCHHH---HHHHHHHHHHHHhh
Confidence 998886654333336789999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhhHHHHHhhhccccccccCCCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCC
Q 002027 738 RQENLWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHD 817 (978)
Q Consensus 738 r~~~~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~~~f~~p~~yp~~sVa~tsTHD 817 (978)
||+++|+++|+++||.|+++|+||||||||||||+||+++|++|||+|+|||||+++++..|.+|++|||+||||+||||
T Consensus 722 r~~~~w~~~a~~~L~~l~~~t~ml~cgEDLG~vp~~v~~vm~~l~i~~l~iqr~~~~~~~~f~~~~~y~y~sV~t~stHD 801 (909)
T PLN02950 722 RQEDLWRENALKTLPALLNSSDMLACGEDLGLVPACVHPVMQELGLLGLRIQRMPSEPGLEFGIPSQYSYMTVCAPSCHD 801 (909)
T ss_pred cCHHHHHHHHHHHHHHHhcCCceEEEecccCcCccchHHHHHHhCCcceEEEeccCCCCCCCCChhhCCcceeeecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred chhHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCC
Q 002027 818 CSTLRAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDP 897 (978)
Q Consensus 818 ~~TlrgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~~~~~~~eriN~P 897 (978)
|+|||+||+++.+++++||+++|++.|.+|..|+++++++||++|+.||||||||||||||+|+++++.+|+++||||+|
T Consensus 802 ~~tlr~WWe~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~il~~~l~s~S~~~i~~~qD~la~~~~~~~~~~~~erIN~P 881 (909)
T PLN02950 802 CSTLRAWWEEDEERRERFYKHVLGSDGPPPSQCVPDVAHFILQQHVEAPSMWAIFPLQDLLALKEEYTTRPANEETINDP 881 (909)
T ss_pred CHHHHHHHhhCHHHHHHHHHHHhCcCCCCCccCCHHHHHHHHHHhcCCCcceehhhHHHHHhCCHhhccCCcccceeeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccccChHhhhCChHHHHHH
Q 002027 898 TNPRHYWRYRVHVTLESLQKDKELKTTV 925 (978)
Q Consensus 898 g~~~~nW~~Rl~~~le~L~~~~~~~~~i 925 (978)
++++||||||||++||+|+++.+++++|
T Consensus 882 ~~~~h~W~yR~~~~le~l~~~~~~~~~i 909 (909)
T PLN02950 882 TNPKHYWRFRVHVTLESLLADKDLLATI 909 (909)
T ss_pred CCCcccceeccCCCHHHHhhChhhhhcC
Confidence 9999999999999999999999988764
No 2
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=1.8e-183 Score=1621.01 Aligned_cols=715 Identities=50% Similarity=0.912 Sum_probs=650.0
Q ss_pred CCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCeeEEecccccc-CCCccceEEeeecCccCCC
Q 002027 209 ESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMR-EMPWRGAGVAVPMFSVRSE 287 (978)
Q Consensus 209 ~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~~~~~~~~~~~~~-~~~~R~~Gv~~~l~SLrs~ 287 (978)
.+.|.++++...+..+++|||+....+..+ =+.-.||.+... ++++..+..++ ...||++||++|||||||+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~~~~R~aGill~l~SLrS~ 74 (745)
T PLN03236 2 SALRDGADTPEAAAAAKACPLDDDPRTETP-ARVLGDRAAATE------RRIIHRDGHFRHGGAWKGSGMALPVFSLRSA 74 (745)
T ss_pred CCccccccChhhhhccccCCccCCCcccch-hhhcccccCCCC------cchhhhhhhhccCcchhhheeeeccccCCCC
Confidence 357888888887788999999987643221 122334433221 22334445555 3568999999999999999
Q ss_pred CCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhhcccC------------
Q 002027 288 ADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKM------------ 355 (978)
Q Consensus 288 ~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l~~~~------------ 355 (978)
+||||||||||++|||||+++|+++|||||||+|+..+++.+||||||+|+|||||+|||++.|++..
T Consensus 75 ~s~GIGDfgdL~~fvD~~a~~G~~~~QiLPL~~t~~~~~~~dSSPYsp~S~fAlNPlyIdle~L~e~~~~~~~~~~~~~~ 154 (745)
T PLN03236 75 ESVGAGDFGDLEALVDFAAEAGMSVVQLLPVNDTCVHGTFWDSYPYSSLSVHALHPLYLKLKELVEEAANAAAAGPDAGR 154 (745)
T ss_pred CCCCcccHHHHHHHHHHHHHcCCCEEEECCCCcCCCCCCCCCCCCcCcccccccChHHcCHHHhhhhhhhcccccchhhh
Confidence 99999999999999999999999999999999998777777889999999999999999999998641
Q ss_pred CHhHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhccccCccccchHHHHhhcCCCCCC
Q 002027 356 PEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTSDHS 435 (978)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~~w~ 435 (978)
..++.++++.++..++.+.|||++|.++|.++|+++|+++.......++|++|+++|+.||++||+||||+++|++.+|+
T Consensus 155 l~~~~~el~~~~~~~~~~~VDY~~V~~~K~~~Lr~af~~f~~~~~~~~~F~~F~~~~~~WL~dYAlF~ALke~~~~~~w~ 234 (745)
T PLN03236 155 LAALAAEIDAAKHALDLKEIDYEATMKEKLMFAKRAFEADGAKFLASDACERFVKANASWLKPYAVFCALRDLFGTAEHW 234 (745)
T ss_pred hhhhHHHHHHhhhccCccceeHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCCcc
Confidence 01123455555545555789999999999999999999986543345689999999999999999999999999999999
Q ss_pred CCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccc
Q 002027 436 QWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRM 514 (978)
Q Consensus 436 ~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~ 514 (978)
+||+ ++.+++++++++....++++++|+||+|+||+|++||+++++||+++||.|||||||||++||||||++|++|++
T Consensus 235 ~WP~~~~~~~~~al~~~~~~~~~~~~eI~f~~flQ~~~~~Q~~~~~~yA~~~GI~L~GDLPIgVa~dSaDvWa~p~lF~l 314 (745)
T PLN03236 235 RWGDLFATFAAAILAKIDCPGGDLYESTRFFFYLQYHLDRQLRRAAAHAAAKGVILKGDLPIGVDKASVDTWMHPKLFRM 314 (745)
T ss_pred CCChhhccCCHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeeceeCCCcHHHhcCHHHhcC
Confidence 9997 588999999998766678899999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCC
Q 002027 515 NTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSI 594 (978)
Q Consensus 515 d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~IP~~~~~g~~G~~~p~~ 594 (978)
+.++|||||+||++|||||+|+|||++|+++||+||++||+++++|||++||||||||||+|+||+++.+|++|+|+|++
T Consensus 315 d~~aGAPPD~FS~~GQnWG~P~YnW~~l~~dgY~WWr~Rlr~~~~~~dalRIDH~~Gf~R~W~IP~~~~ta~~G~w~ps~ 394 (745)
T PLN03236 315 DTSTGAPPDAFDANGQNWGFPTYDWEEMAEDDYAWWRARMQHLEQFFSAIRIDHILGFFRIWELPAHAKTGRLGRFRPSL 394 (745)
T ss_pred CCCcCCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEeechhhhceeeeecCCCccccCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhcccc---------CCcceeccccchHHHHHH--HHh
Q 002027 595 PLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQ---------KGRYEFTEDCNTEKKIAA--KLK 663 (978)
Q Consensus 595 p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~---------~g~y~~~~~~~~e~~i~~--~l~ 663 (978)
|||++||+++|||+++|||+|||+.++|.++||+++++|+++||++++ +|.|.|||+|+||++|.+ +++
T Consensus 395 p~s~~el~~~Gl~~~~r~~~P~i~~~~l~~~fg~~~~~v~~~~l~~~~~~~~~~~~~~~~y~~k~e~~te~~i~~~~~~~ 474 (745)
T PLN03236 395 PIRKDELAARGLWDLDRLCEPWIQSEELEALFGDNDGEAAGRFFEETDAETKPDGTTRGLWKFRKEFDTEQAIFASEALK 474 (745)
T ss_pred CCCHHHHHhcCCcchhhhccccccHHHHHHHhcccHHHHHHHHHHhhccccccccccCCeeeechhhhhHHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999987 678999999999999987 776
Q ss_pred hhhhccccc-chhhhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhhhhhHH
Q 002027 664 TCAEKSMLL-DSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFHRQENL 742 (978)
Q Consensus 664 ~~~~~~~~~-~~~~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~r~~~~ 742 (978)
.+++.+.|+ +..++||++|+++++|||||+|+++++.|||||.+++|+||++|++++ |++|++||+||||+||+++
T Consensus 475 ~~~~~~~~~~~~~~~~~~gL~~l~~nv~~i~d~~~~~~f~Pr~~~~~t~s~~~L~~~~---k~~~~~L~~dy~~~r~~~~ 551 (745)
T PLN03236 475 PRDDFPDHLNDEQEELRAGLMQLFQNRCLLRDPDDADAFYPRFEFEETTSFQALDDWA---RDALRDLSDDYFFARQDAT 551 (745)
T ss_pred cccccchhhhhhHHHHHHHHHHHhcCeeeeecCCCCcCccccccccccchhhhcCHHH---HHHHHHHHHHHHhhccHHH
Confidence 555555552 235899999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHhhhccccccccCCCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCC-CCCCCCCCCCCCCcEEecCCCCchhH
Q 002027 743 WRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEP-GLEFGIPSQYNYMTVCAPSCHDCSTL 821 (978)
Q Consensus 743 w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~-~~~f~~p~~yp~~sVa~tsTHD~~Tl 821 (978)
|+++|+++||.|+++|+||||||||||||+||++||++|||+|||||||++++ +..|..|++|||+||||||||||+||
T Consensus 552 W~~~a~k~L~~l~~~t~mlvcgEDLG~vP~~V~~vm~eL~Il~LrIqRmpk~~~~~~F~~~~~ypy~SV~t~StHD~stL 631 (745)
T PLN03236 552 WRENARKTLPALLKCTEMLVCGEDLGFTPMCVPPVLDELGILGLRIQRMPHDGESGEFGRPERYPYETVCSPSCHDTMTT 631 (745)
T ss_pred HHHHHHHHHHHHhcCCCeEEehhhcCCCchhHHHHHHHcCCCceEEeecCCCCCCCcCCChhhCCCceeEeCCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999997 68999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCCC
Q 002027 822 RAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNPR 901 (978)
Q Consensus 822 rgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~~~~~~~eriN~Pg~~~ 901 (978)
|+||+++.+++++|+.. . ..|. |..|+++++++||++|+.||||||||||||||+|+++++.+++++||||+|++++
T Consensus 632 R~WWee~~~~~~~~~~~-~-~~g~-p~~~~~~~~~~Il~~~l~s~Sml~I~~~QD~lal~~~l~~~~~~~erIN~P~~~~ 708 (745)
T PLN03236 632 RAWWEADAARRARYAEL-F-QAGN-DDACEPHVMRAILRQHIASPSSIAIFPAQDLLALDEEYAKRPAEEETINDPTNPK 708 (745)
T ss_pred HHHHhhCHHHHHHHHHh-c-CCCC-CCCCCHHHHHHHHHHHhcCchhhhhhhHHHHhccChhhccCCchHhheeCCCCCC
Confidence 99999999998888633 3 3454 8889999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccChHhhhCChHHHHHHHHHHHHhCCCC
Q 002027 902 HYWRYRVHVTLESLQKDKELKTTVKDLVCASGRSC 936 (978)
Q Consensus 902 ~nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~~ 936 (978)
||||||||++||+|+++.+++++|++|++.+||.+
T Consensus 709 h~WryR~~~~lE~L~~~~~~~~~i~~li~~sgr~~ 743 (745)
T PLN03236 709 HYWRFRIHVACEDLLANAAFLGEIKDLVREGGQMP 743 (745)
T ss_pred cCceeccCCCHHHHhhcHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999954
No 3
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=9.6e-129 Score=1128.93 Aligned_cols=485 Identities=29% Similarity=0.555 Sum_probs=431.6
Q ss_pred CccceEEeeecCccCCCCCCcccCHH-HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChh
Q 002027 271 PWRGAGVAVPMFSVRSEADLGVGEFL-DLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQ 349 (978)
Q Consensus 271 ~~R~~Gv~~~l~SLrs~~~~GIGdf~-dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~ 349 (978)
..|+|||++||||| +.+||||||| ||++|||||+++|+++|||||||+|+. +.|||+|+|+||+||+|||++
T Consensus 3 ~~R~~Gv~~~l~SL--~~~~GiGDfg~dl~~~id~~~~~G~~~~qilPl~~~~~-----~~SPY~~~S~~alnplyI~l~ 75 (497)
T PRK14508 3 MKRKSGILLHITSL--PGSYGIGDFGKGAYEFIDFLAEAGQSYWQILPLGPTGY-----GDSPYQSFSAFAGNPLLIDLE 75 (497)
T ss_pred CCCceEEEeccccC--CCCCCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCC-----CCCCcCcccccccChhhcChh
Confidence 35999999999999 5568999999 999999999999999999999999983 358999999999999999999
Q ss_pred hhcccCCHhHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhcc-ccchhHHHHHHHhccccCccccchHHHHhh
Q 002027 350 ALSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDL-ILNSSAFQNFFSENEDWLKPYAAFCFLRDF 428 (978)
Q Consensus 350 ~l~~~~~~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~-~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~ 428 (978)
.|++...- ..+++.+.......+.|||++|+++|.++|+++|++|... .....+|++||++++.||++||+||+|+++
T Consensus 76 ~l~~~~~l-~~~~~~~~~~~~~~~~vdy~~v~~~K~~~L~~af~~f~~~~~~~~~~f~~F~~~~~~wL~~yA~F~al~~~ 154 (497)
T PRK14508 76 ALVDDGLL-DESDLEGLPFGSNPERVDYDLVREAKRPLLRKAFERFLRASLERAEAFEAFCEEEAYWLDDYALFMALKEH 154 (497)
T ss_pred hccccccC-CHHHHhhhhhccCccccchHHHHHHHHHHHHHHHHhhhhcCchhHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99886210 0233443222222378999999999999999999998522 223478999999999999999999999999
Q ss_pred cCCCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeccccccCCCchhhcc
Q 002027 429 FDTSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWV 507 (978)
Q Consensus 429 ~~~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa 507 (978)
|++.+|++||+ ++.+++++++++. ++++++|+||+|+||+|++||+++++||+++||+|||||||||++||||||+
T Consensus 155 ~~~~~W~~WP~~~~~~~~~~~~~~~---~~~~~~i~f~~~lQ~~~~~Q~~~~~~yA~~~Gi~L~gDLpigV~~dsaDvWa 231 (497)
T PRK14508 155 FGGLPWNEWPEPLRKRDPEALAKAR---EELADEILYHKFLQYLFFRQWKALKAYANDKGIEIIGDLPIYVAYDSADVWA 231 (497)
T ss_pred hCCCCcCCCCHHhhcCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeeecccCCCCHHHHc
Confidence 99999999997 5889999999884 6899999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCc------ccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCC
Q 002027 508 YPNLFRMNTS------TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEH 581 (978)
Q Consensus 508 ~p~lF~~d~~------aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~IP~~ 581 (978)
+|++|++|.+ +|||||+||++|||||+|+|||++|+++||+||++||++++++||++||||||||+|+|+||++
T Consensus 232 ~~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~~~lRIDH~~Gf~r~W~IP~~ 311 (497)
T PRK14508 232 NPELFKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYNWDALRKDGYRWWIERLRRSFKLYDIVRIDHFRGFEAYWEIPAG 311 (497)
T ss_pred ChhhhcCCCCCCcceeeeCCCCCCCcccCcCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeeeecCC
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHH
Q 002027 582 AMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAK 661 (978)
Q Consensus 582 ~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~i~~~ 661 (978)
+.+|..|+|+|+|. ..
T Consensus 312 ~~~a~~G~~v~~p~---------------------------------------~~------------------------- 327 (497)
T PRK14508 312 EKTAINGRWVPGPG---------------------------------------KD------------------------- 327 (497)
T ss_pred CCCCCCCeeecCCH---------------------------------------HH-------------------------
Confidence 99999999999851 01
Q ss_pred HhhhhhcccccchhhhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhhhhhH
Q 002027 662 LKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFHRQEN 741 (978)
Q Consensus 662 l~~~~~~~~~~~~~~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~r~~~ 741 (978)
||+++.
T Consensus 328 --------------------l~~~l~------------------------------------------------------ 333 (497)
T PRK14508 328 --------------------LFEAVK------------------------------------------------------ 333 (497)
T ss_pred --------------------HHHHHH------------------------------------------------------
Confidence 222221
Q ss_pred HHHHhhhccccccccCCCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCC-CCCCCCCCCCCCcEEecCCCCchh
Q 002027 742 LWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPG-LEFGIPSQYNYMTVCAPSCHDCST 820 (978)
Q Consensus 742 ~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~-~~f~~p~~yp~~sVa~tsTHD~~T 820 (978)
.+ +++|+|||||||+||++|+++|+++||+||||++|+++.+ .+++.|++||++||||||||||+|
T Consensus 334 ----~e---------~~~~~vigEDLG~vp~~V~~~l~~~gi~g~~Vl~f~~~~~~~~~~~p~~~~~~~v~~~~THD~~T 400 (497)
T PRK14508 334 ----EE---------LGDLPIIAEDLGVITPDVEELRDRFGFPGMKILQFAFDGDSDNPYLPHNYPRNSVVYTGTHDNDT 400 (497)
T ss_pred ----HH---------hCCCCEEEeECCCCCHHHHHHHHHcCCCccEEEEecCCCCCCCCCCCcCCCCCeEEECCCCCCHH
Confidence 00 1368899999999999999999999999999999999853 357789999999999999999999
Q ss_pred HHHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCC
Q 002027 821 LRAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNP 900 (978)
Q Consensus 821 lrgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~~~~~~~eriN~Pg~~ 900 (978)
|+|||++.+.+.++++.++|+..+ .++++++|++.+++|+|++||+||||+|+|++++ |||+|||+
T Consensus 401 l~gWw~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~S~s~l~i~~lqDllgl~~~~--------r~N~PGt~ 466 (497)
T PRK14508 401 TVGWWESLDPEERKRVADYLGRSS------EEEIHWALIRLALASVADLAILPMQDLLGLGSEA--------RMNTPGTV 466 (497)
T ss_pred HHHHHhCCCHHHHHHHHHHhccCC------chhHHHHHHHHHhcCCchheeeeHHHHhCCCCcC--------CCcCCCCC
Confidence 999999988888888889998631 2679999999999999999999999999999888 99999999
Q ss_pred CCCcccccccChHhhhCChHHHHHHHHHHHHhCCC
Q 002027 901 RHYWRYRVHVTLESLQKDKELKTTVKDLVCASGRS 935 (978)
Q Consensus 901 ~~nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~ 935 (978)
++||+|||+.++++ .+..++|+++++.+||.
T Consensus 467 ~~nW~~Rl~~~~~~----~~~~~~l~~l~~~~~R~ 497 (497)
T PRK14508 467 GGNWSWRLLPDDLT----DDLADRLRELTELYGRA 497 (497)
T ss_pred CCCCCccCCccccC----HHHHHHHHHHHHHhCcC
Confidence 99999999987655 46789999999999994
No 4
>PLN02635 disproportionating enzyme
Probab=100.00 E-value=2.5e-127 Score=1116.06 Aligned_cols=488 Identities=25% Similarity=0.464 Sum_probs=431.3
Q ss_pred CccceEEeeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChh
Q 002027 271 PWRGAGVAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQ 349 (978)
Q Consensus 271 ~~R~~Gv~~~l~SLrs~~~~GIGdf~d-l~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~ 349 (978)
..|++||++|||||||+ |||||||+ +++|||||+++|+++|||||||||++..+ .++|||+|+|+||+||+|||++
T Consensus 26 ~~R~~Gvll~l~SLps~--~GIGDfg~~a~~fvd~la~~G~~~wQilPL~pt~~~~~-~~~SPYs~~S~fa~NPlyI~le 102 (538)
T PLN02635 26 ARRRAGILLHPTSLPGP--YGIGDLGDEAFRFLDWLASTGCSVWQVLPLVPPGRKGG-EDGSPYSGQDANCGNTLLISLE 102 (538)
T ss_pred CCcceEEEEccccCCCC--CCCcchHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCC-CCCCCcccccccccChhhcCHH
Confidence 35999999999999986 89999998 77999999999999999999999986443 3679999999999999999999
Q ss_pred hhcccCCHhH-HHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHhc--cccCccccchHHH
Q 002027 350 ALSEKMPEDI-KKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLI-LNSSAFQNFFSEN--EDWLKPYAAFCFL 425 (978)
Q Consensus 350 ~l~~~~~~~~-~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~-~~~~~f~~F~~~~--~~wL~~yA~F~aL 425 (978)
.|++.. .+ .+++... +..+.|||+.|+++|.++|+++|++|.... ....+|++||+++ +.||++||+||||
T Consensus 103 ~L~e~g--~l~~~~l~~~---~~~~~VDY~~v~~~K~~~L~~a~~~f~~~~~~~~~~F~~F~~~~g~~~WL~dyAlF~aL 177 (538)
T PLN02635 103 ELVKDG--LLEEDELPEP---VPVGKVDFSAVAELKDPLIAKAAERLLLSDGELKEELEDFRKDPEISSWLEDAALFAAI 177 (538)
T ss_pred hhhccc--ccChhhHhhh---cCCCcccHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 998851 11 1223222 234789999999999999999999874321 2236899999999 7999999999999
Q ss_pred HhhcCCCCCCCCCcC-CCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeccccccCCCchh
Q 002027 426 RDFFDTSDHSQWGRF-SHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVD 504 (978)
Q Consensus 426 ~~~~~~~~w~~Wp~~-~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaD 504 (978)
+++|++.+|++||+. +.+++++++++. ++++++|+||+|+||+|++||+++++||+++||.|||||||||++||||
T Consensus 178 k~~~~~~~W~~WPe~~~~~~~~al~~~~---~~~~~~i~f~~~lQ~~~~~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSaD 254 (538)
T PLN02635 178 DNTLNAKAWWDWPEPLRDRHPAALEAIR---QSHKDFIDEFIAQQFLFQRQWQAVRSYANEKGISIIGDMPIYVGGHSAD 254 (538)
T ss_pred HHHhCCCCcccCCHhhccCCHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeecccCCCcHH
Confidence 999999999999974 889999999884 6899999999999999999999999999999999999999999999999
Q ss_pred hccCcccccccC------cccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeee
Q 002027 505 TWVYPNLFRMNT------STGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWEL 578 (978)
Q Consensus 505 vWa~p~lF~~d~------~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~I 578 (978)
||++|++|++|. ++|||||+||++|||||||+|||++|+++||+||++|||+++++||++||||||||+|+|+|
T Consensus 255 vWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~Rlr~~~~~~d~lRIDHf~Gf~r~W~I 334 (538)
T PLN02635 255 VWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPLYDWKAMAKDGYSWWAGRMRRALELYDEFRIDHFRGFAGYWAV 334 (538)
T ss_pred HhcCHHhhcCCCCCCcceeeeCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhheeeec
Confidence 999999999996 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHH
Q 002027 579 PEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKI 658 (978)
Q Consensus 579 P~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~i 658 (978)
|+++.++..|.|+++| | .+
T Consensus 335 P~g~~ta~~G~wv~~P----------g-----------------------------~~---------------------- 353 (538)
T PLN02635 335 PADAKTAMNGRWKVGP----------G-----------------------------KS---------------------- 353 (538)
T ss_pred cCCCCCCCCCeeeeCC----------H-----------------------------HH----------------------
Confidence 9999999999999985 1 11
Q ss_pred HHHHhhhhhcccccchhhhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhhh
Q 002027 659 AAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFHR 738 (978)
Q Consensus 659 ~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~r 738 (978)
||+.+.
T Consensus 354 -----------------------l~~~l~--------------------------------------------------- 359 (538)
T PLN02635 354 -----------------------FFDAIK--------------------------------------------------- 359 (538)
T ss_pred -----------------------HHHHHH---------------------------------------------------
Confidence 222211
Q ss_pred hhHHHHHhhhccccccccCCCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCC-CCCCCCCCCCCCcEEecCCCC
Q 002027 739 QENLWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPG-LEFGIPSQYNYMTVCAPSCHD 817 (978)
Q Consensus 739 ~~~~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~-~~f~~p~~yp~~sVa~tsTHD 817 (978)
+.++ +|.|||||||+||++|+++|+++||+||||++|+++.+ .+++.|++|+++|||||||||
T Consensus 360 -------~~~~---------~~~vIaEDLG~I~~~V~~l~~~~g~pGmkVl~F~f~~~~~~~~~P~~y~~~~v~ytgTHD 423 (538)
T PLN02635 360 -------KAVG---------KIDIIAEDLGVITEDVVELRKAIGAPGMAVLQFAFGGDADNPHLPHNHEENQVVYPGTHD 423 (538)
T ss_pred -------HHcC---------CCCEEEeeCCCCCHHHHHHHHHcCCCCCEEEEeeecCCCCCCCCcccccccceeeecCCC
Confidence 1112 57799999999999999999999999999999999854 369999999999999999999
Q ss_pred chhHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCC
Q 002027 818 CSTLRAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDP 897 (978)
Q Consensus 818 ~~TlrgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~~~~~~~eriN~P 897 (978)
|+|++|||++.+...++.+..||+... ..+++++||+.+++|+|.+||+||||+|+|++++ |||+|
T Consensus 424 ~~Tl~GW~~~~d~~~r~~~~~yl~~~~------~~~~~~~li~~a~~s~a~~~i~p~QD~Lgl~~~a--------RmN~P 489 (538)
T PLN02635 424 NDTVVGWWDKLDEEEKSKVRKYLGIAD------EDDIAWELIRAALSSVARTAVIPMQDVLGLDNSA--------RMNTP 489 (538)
T ss_pred cccHHHHHhcCCHHHHHHHHHHhCCCC------ccchhHHHHHHHHHhHHHHHHhhHHHHhCCCccc--------cCcCC
Confidence 999999999888777777889998531 2469999999999999999999999999999988 99999
Q ss_pred CCCCCCcccccccChHhhhCC-hHHHHHHHHHHHHhCCCC
Q 002027 898 TNPRHYWRYRVHVTLESLQKD-KELKTTVKDLVCASGRSC 936 (978)
Q Consensus 898 g~~~~nW~~Rl~~~le~L~~~-~~~~~~i~~l~~~~gR~~ 936 (978)
||.++||+|||+.+ .++.. .++.++|++|++.|||.+
T Consensus 490 gt~~~NW~wR~~~~--~~~~~~~~~~~~l~~l~~~~~R~~ 527 (538)
T PLN02635 490 ATQAGNWAWRIGSS--GIFDSLEPEAEKLRELLHLYNRLP 527 (538)
T ss_pred CCCCCCeeeecCcc--ccccccHHHHHHHHHHHHHHCCCC
Confidence 99999999999853 32322 568899999999999943
No 5
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=100.00 E-value=1.1e-126 Score=1118.44 Aligned_cols=491 Identities=38% Similarity=0.689 Sum_probs=370.5
Q ss_pred eecCccCCCCCCcccCHH-HHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhhcccCCH
Q 002027 279 VPMFSVRSEADLGVGEFL-DLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMPE 357 (978)
Q Consensus 279 ~~l~SLrs~~~~GIGdf~-dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l~~~~~~ 357 (978)
||||||||++|||||||| +|++|||||+++|+++||||||+||++. ++|||+|+|+||+||+|||++.|++....
T Consensus 1 ~~l~SLrs~~~~GIGDfg~dl~~~~d~~~~~G~~i~qllpl~pt~~~----~~sPY~p~S~~alNPlyI~l~~l~e~~~~ 76 (496)
T PF02446_consen 1 VPLYSLRSPRSWGIGDFGDDLYQFIDWAAEAGQSIWQLLPLNPTGPG----NSSPYSPSSRFALNPLYIDLEALPEFGLL 76 (496)
T ss_dssp --GGGS-SSS--SS--SSHHHHHHHHHHHHCT--EEE----S-B-TT----CTTTTSBS-SSS--GGGS-SHHHHHTTSS
T ss_pred CCCCcCCCCCCCceecHHHHHHHHHHHHHHcCCCeeccccccCCCCC----CCCCCCCCCCCcCChHHcCHHHhhhcccc
Confidence 699999999999999995 8999999999999999999999999865 45799999999999999999999886311
Q ss_pred hHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhccccCccccchHHHHhhcCCCCCCCC
Q 002027 358 DIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTSDHSQW 437 (978)
Q Consensus 358 ~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~~w~~W 437 (978)
.....++........+.|||++|+++|.++|+++|++|.+......+|++||++++.||++||+||+|++++++.+|.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~VDY~~v~~~K~~~L~~af~~f~~~~~~~~~f~~F~~~~~~wL~~yA~f~al~~~~~~~~w~~W 156 (496)
T PF02446_consen 77 DEAEEIEELAELRDADRVDYEAVAALKRRALRKAFERFKEQAERREEFEAFCEQNGEWLEDYALFCALKEKFGGAPWREW 156 (496)
T ss_dssp -----GGGS-S---SSB--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSGGGS
T ss_pred chhhhhhhcccccccccccHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHhcchhHhHHHHHHHHHHhCCCCcccC
Confidence 11111222211122389999999999999999999999775434579999999999999999999999999999999999
Q ss_pred C-c-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeccccccCCCchhhccCccccccc
Q 002027 438 G-R-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMN 515 (978)
Q Consensus 438 p-~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d 515 (978)
| + ++.+++++++++. ++++++|+||+|+||+|++||+++++||+++||+|||||||||++||||||++|++|+++
T Consensus 157 P~~~~~~~~~~~l~~~~---~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~gI~L~gDlpigv~~dsaDvW~~~~lF~~~ 233 (496)
T PF02446_consen 157 PEEELRDRDSEALAAFR---EEHADEIEFHKFLQWLAFKQWKAAKEYAREMGIGLIGDLPIGVSPDSADVWANPELFLLD 233 (496)
T ss_dssp --HHHHTT-HHHHHHHH---HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEESS--SSSHHHHH-GGGB-B-
T ss_pred CHHHHhhhcHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeccceECCCcHHHHhCHHHHhCc
Confidence 8 4 5888999998884 679999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCCc
Q 002027 516 TSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIP 595 (978)
Q Consensus 516 ~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~IP~~~~~g~~G~~~p~~p 595 (978)
.++|||||+||++|||||+|+|||++|+++||+||++||++++++||++||||||||||+|+||.++.++..|.|++++.
T Consensus 234 ~~aGaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rl~~~~~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~ 313 (496)
T PF02446_consen 234 ASAGAPPDYFSPTGQNWGNPPYNWDALKEDGYRWWIDRLRANMRLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPG 313 (496)
T ss_dssp EEEEE-SSSSSSS-EEEEEE-B-HHHHHHTTTHHHHHHHHHHHCC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--H
T ss_pred CeeCCCCCCCCcccccCCCCCcCHHHHHHcCCHHHHHHHHHHHHhCCchHHHHHHHHHheeEecCCCCCCCCceeecchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999989999999998741
Q ss_pred ccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhcccccchh
Q 002027 596 LSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEKSMLLDSE 675 (978)
Q Consensus 596 ~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~i~~~l~~~~~~~~~~~~~ 675 (978)
++
T Consensus 314 -----------------------------------------------------------~~------------------- 315 (496)
T PF02446_consen 314 -----------------------------------------------------------ED------------------- 315 (496)
T ss_dssp -----------------------------------------------------------HH-------------------
T ss_pred -----------------------------------------------------------HH-------------------
Confidence 11
Q ss_pred hhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhhhhhHHHHHhhhccccccc
Q 002027 676 DKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFHRQENLWRENALKTLPALL 755 (978)
Q Consensus 676 ~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~r~~~~w~~~~~~~L~~l~ 755 (978)
||+++. .+.++
T Consensus 316 ------ll~~l~----------------------------------------------------------~e~~r----- 326 (496)
T PF02446_consen 316 ------LLAILA----------------------------------------------------------LESGR----- 326 (496)
T ss_dssp ------HHHHHH----------------------------------------------------------HHHS------
T ss_pred ------HHHHHH----------------------------------------------------------HHcCC-----
Confidence 333332 00010
Q ss_pred cCCCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCC-CCCCCCCCCCCCCCcEEecCCCCchhHHHHHhcCHHHHHH
Q 002027 756 NSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSE-PGLEFGIPSQYNYMTVCAPSCHDCSTLRAWWEEDEERRRR 834 (978)
Q Consensus 756 ~~t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~-~~~~f~~p~~yp~~sVa~tsTHD~~TlrgWW~~~~~~~~~ 834 (978)
+|+|||||||+||++|+++|+++||+||||++|+++ .+++|+.|++||++||||||||||+||+|||++.++++++
T Consensus 327 ---~~~vigEDLG~vp~~v~~~l~~~gi~g~~Vl~f~~~~~~~~~~~P~~~~~~sva~~~THD~~Tl~gww~~~~~~~~~ 403 (496)
T PF02446_consen 327 ---DCLVIGEDLGTVPPEVRELLAELGIPGMRVLQFEFDEDDGNFYLPHNYPENSVAYTGTHDNPTLRGWWEGEDEEERR 403 (496)
T ss_dssp ---S-EEEE--TSS--HHHHHHHHHTT--EEEEGGGSSSSSTT-TTSGGGSTSSEEEESS-TTS--HHHHHHCS-HHHHH
T ss_pred ---CCcEEEeecCCCcHHHHHHHHHcCCCceEEEEecCCCCCCCCCCcccCCCccEeeCCCCCCHHHHHHHhCCCHHHHH
Confidence 588999999999999999999999999999999994 4568999999999999999999999999999999988888
Q ss_pred HHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCCCCCCCCcccccccChHh
Q 002027 835 FFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNPRHYWRYRVHVTLES 914 (978)
Q Consensus 835 ~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~~~~~~~eriN~Pg~~~~nW~~Rl~~~le~ 914 (978)
++.++|+.. ..+...++++++++|+.++.|+|++||+||||+|+|+++. ..++.++|||+|||.++||||||+.++|+
T Consensus 404 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~s~s~~~i~~~qDlL~l~~e~-~~~~~~~r~N~PGt~~~NW~~Rl~~~l~~ 481 (496)
T PF02446_consen 404 YLARYLGRL-SAPETDEDEIAEALIRQALSSPSRLAIIPLQDLLGLGDEL-DLLPEEERINIPGTVDENWRWRLPESLEE 481 (496)
T ss_dssp HHHHHHCHT-T-SSSSGGGHHHHHHHHHHHSS-SEEEEEHHHHTT--GG--------G-S--TT-SSSTS-B---TTGCS
T ss_pred HHHHHhcCc-cccCCCCcchhHHHHHHHHHhHHHHHHHHHHHHHcCChhh-ccccCCCCCcCCCCCCCcCCeeCCCCHHH
Confidence 899999854 4556677899999999999999999999999999999986 67888899999999999999999999999
Q ss_pred hhCChHHHHHHHHH
Q 002027 915 LQKDKELKTTVKDL 928 (978)
Q Consensus 915 L~~~~~~~~~i~~l 928 (978)
+.+++++++.|++|
T Consensus 482 ~~~~~~~~~~l~~i 495 (496)
T PF02446_consen 482 LFEDAEFIALLTEI 495 (496)
T ss_dssp GHHHHHHHHHHHHH
T ss_pred hHhhHHHHHhhccc
Confidence 98777777766654
No 6
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=100.00 E-value=1.7e-123 Score=1115.36 Aligned_cols=543 Identities=24% Similarity=0.378 Sum_probs=457.0
Q ss_pred EeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCeeEEeccccccCCCccceEEeeecCccCCCCCCcccCH
Q 002027 216 CVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVGEF 295 (978)
Q Consensus 216 v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~~~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GIGdf 295 (978)
+.+| .+++..|+-+....++.. ..-.++.+|..|..|. ... ...|.|||++|||||||+++||||||
T Consensus 98 ~~lp-~~lp~Gyh~L~~~~~~~~----~~~~livaP~~~~~p~------~~~--~~~r~wGv~~qlySLrs~~~~GIGDf 164 (695)
T PRK11052 98 LTLP-ADLPLGYHTLTLTQDDQR----WHCRIIVAPKRCYEPQ------ALL--QGKKLWGACVQLYTLRSEHNWGIGDF 164 (695)
T ss_pred ccCC-CCCCCeeEEEEEEcCCce----EEEEEEEeCCccCCch------hhc--cCCCceEEEeccccCCCCCCCCeecH
Confidence 4577 678999999998753321 1234677787776442 111 12478999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhhcccCC-HhHH-----HHHHHhhcc
Q 002027 296 LDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMP-EDIK-----KEIEKAKVQ 369 (978)
Q Consensus 296 ~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l~~~~~-~~~~-----~~~~~~~~~ 369 (978)
+||++||||++++|+++|||||||++++..+ .++|||||+|+||+||+|||++.|++... ..+. .++.+....
T Consensus 165 gdl~~l~d~~a~~G~~~~qlnPlha~~p~~p-~~~SPYsp~Sr~alNPlyI~~e~l~e~~~~~~~~~~~~~~~~~~~~~~ 243 (695)
T PRK11052 165 GDLKQMLEDVAKRGGDFIGLNPIHALYPANP-ESASPYSPSSRRWLNVIYIDVNAVEDFQQSEEAQAWWQSAETQQRLQQ 243 (695)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCcCCCCCC-CCCCCcccccccccChHHcCHHHHhhhhhhhhhhhhhcchhHHHHHhh
Confidence 9999999999999999999999999987654 35799999999999999999999988532 1111 122221222
Q ss_pred cC-CCCCCHHHHHHHHHHHHHHHHHhhhcc---ccchhHHHHHHHhccccCccccchHHHHhhcCCC-----CCCCCCc-
Q 002027 370 LD-KKDVDYEATLATKLAIARKVFNQEKDL---ILNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTS-----DHSQWGR- 439 (978)
Q Consensus 370 l~-~~~vDY~~v~~~K~~~L~~~f~~~~~~---~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~-----~w~~Wp~- 439 (978)
++ .+.|||++|+++|.++|+++|++|.+. .....+|++||++++.||++||+||||+++|++. +|.+||+
T Consensus 244 ~~~~~~VDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~f~~F~~~~g~wL~~yA~F~AL~~~~~~~~~~~~~W~~WP~~ 323 (695)
T PRK11052 244 ARAAEWVDYSTVTALKLTALRLAFKQFAQRDKDDEQMQAFRQFVAEGGESLLWQAAFDALHAHLVKEDEMRWGWPVWPEE 323 (695)
T ss_pred hccCCcccHHHHHHHHHHHHHHHHHHHhhccCcchhHHHHHHHHHhCchHHHHHHHHHHHHHHhcCCCCCCCCccCCCHh
Confidence 33 268999999999999999999998543 1234689999999999999999999999999865 7999996
Q ss_pred CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--eEeeccccccCCCchhhccCcccccccCc
Q 002027 440 FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGV--VLKGDLPIGVDRNSVDTWVYPNLFRMNTS 517 (978)
Q Consensus 440 ~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI--~L~gDLpigv~~dSaDvWa~p~lF~~d~~ 517 (978)
++++++++++++. ++++++|+||+|+||+|++||+++++||+++|| +|||||||||++||||||++|++|+++.+
T Consensus 324 ~~~~~~~a~~~~~---~~~~~~v~f~~~lQ~~~~~Ql~~~~~~A~~~Gm~igL~gDLpvgv~~dsaDvWa~~~~F~l~~~ 400 (695)
T PRK11052 324 YQDVDSPAVQQFC---EEHADEVDFYLWLQWLADSQFAACWQLSQQLGMPIGLYRDLAVGVAEGGAETWCDRELYCLKAS 400 (695)
T ss_pred hccCCHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEEeeeceECCCcHHHhCCHHHhcCCCc
Confidence 5899999999885 678999999999999999999999999999998 89999999999999999999999999999
Q ss_pred ccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCCccc
Q 002027 518 TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLS 597 (978)
Q Consensus 518 aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~IP~~~~~g~~G~~~p~~p~~ 597 (978)
+|||||+||++|||||+|+|||++|+++||+||++|||+++++||++||||||||||+|+||+++ ++..|.|+++|
T Consensus 401 ~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~g~lRIDH~~Gl~rlW~IP~g~-~a~~G~yv~~P--- 476 (695)
T PRK11052 401 VGAPPDILGPLGQNWGLPPMDPHVLQARAYQPFIDLLRANMQHCGALRIDHVMSLLRLWWIPYGE-TADQGAYVHYP--- 476 (695)
T ss_pred CCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCEEEecchhhhheeeecCCCC-CCCCCeeEeCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999998 78888887663
Q ss_pred HHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhcccccchhhh
Q 002027 598 QEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEKSMLLDSEDK 677 (978)
Q Consensus 598 ~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~i~~~l~~~~~~~~~~~~~~~ 677 (978)
.++
T Consensus 477 --------------------------------------------------------~~~--------------------- 479 (695)
T PRK11052 477 --------------------------------------------------------VDD--------------------- 479 (695)
T ss_pred --------------------------------------------------------HHH---------------------
Confidence 011
Q ss_pred HHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhhhhhHHHHHhhhccccccccC
Q 002027 678 TRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFHRQENLWRENALKTLPALLNS 757 (978)
Q Consensus 678 ~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~r~~~~w~~~~~~~L~~l~~~ 757 (978)
||.++. + + + +|
T Consensus 480 ----ll~~la---l-------------------------e--s----------------~~------------------- 490 (695)
T PRK11052 480 ----LLAILA---L-------------------------E--S----------------QR------------------- 490 (695)
T ss_pred ----HHHHHH---H-------------------------H--H----------------hc-------------------
Confidence 222221 0 0 1 11
Q ss_pred CCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCCchhHHHHHhcCHHH------
Q 002027 758 SDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHDCSTLRAWWEEDEER------ 831 (978)
Q Consensus 758 t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~~~f~~p~~yp~~sVa~tsTHD~~TlrgWW~~~~~~------ 831 (978)
.+|+|||||||+||++|+++|+++||+||||++|+++.+++|+.|++|+++||||||||||+|++|||++.+..
T Consensus 491 ~~~~vIgEDLG~Vp~~Vr~~l~~~gi~g~~Vl~Fe~~~~~~~~~P~~y~~~sva~t~THD~pTl~Gww~~~di~lr~~lg 570 (695)
T PRK11052 491 HRCMVIGEDLGTVPVEIVGKLRDSGVYSYKVLYFENDEEGGFRAPAAYPEQSMATLTTHDLPTLRGYWQCDDLTLGKELG 570 (695)
T ss_pred CCCCEEEeeCCCCCHHHHHHHHHcCCCCcEEEEecccCCCCCCCcccCcCCeEEECCCCCChhHHHHHhcCchHHHHHcC
Confidence 26889999999999999999999999999999999987678999999999999999999999999999875411
Q ss_pred -------HH----------HHHHHHhcCCCCCCC---------CCchHHHHHHHHHHHcCCCceeccchhhhhcCccccC
Q 002027 832 -------RR----------RFFKNVVGSDALPPS---------QCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYT 885 (978)
Q Consensus 832 -------~~----------~~~~~~l~~~g~~p~---------~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~ 885 (978)
.+ .-+...|...|..|. .++++++.++++++++|||.|+++||||+|++.+
T Consensus 571 l~~~~~~~~~~~~~r~~~~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~l~~a~~~~la~tpS~L~~~~leD~lg~~~--- 647 (695)
T PRK11052 571 LYPDEEVLRGLYQDRERAKQGLLDALHKHGCLPKRAGHKASLMSMTPTLNRGLQRYVADSNSALLGLQPEDWLDMAK--- 647 (695)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccccccccCCHHHHHHHHHHHhcCCchhhhcCHHHHhcCcc---
Confidence 11 112355555554433 2467889999999999999999999999999864
Q ss_pred CCCCCccccCCCCCCCC--CcccccccChHhhhCChHHHHHHHHHHHHhCCC
Q 002027 886 TRPATEETINDPTNPRH--YWRYRVHVTLESLQKDKELKTTVKDLVCASGRS 935 (978)
Q Consensus 886 ~~~~~~eriN~Pg~~~~--nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~ 935 (978)
++|+|||+.+ |||+|||.++|+|.++++++..++.|.+.++|.
T Consensus 648 -------~~N~PGT~~eyPNWrrrl~~~le~l~~~~~~~~~~~~l~~~r~~~ 692 (695)
T PRK11052 648 -------PVNIPGTSDEYPNWRRKLSATLEEIFADEGVNRLLKDLDKRRKAA 692 (695)
T ss_pred -------CCCCCCCCCCCCCccccCCcCHHHHhcCHHHHHHHHHHHHHhhhh
Confidence 8999999965 999999999999999999999999999877654
No 7
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=100.00 E-value=3e-120 Score=1060.00 Aligned_cols=483 Identities=27% Similarity=0.468 Sum_probs=420.2
Q ss_pred ccceEEeeecCccCCCCCCcccCHHHH-HHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhh
Q 002027 272 WRGAGVAVPMFSVRSEADLGVGEFLDL-KLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQA 350 (978)
Q Consensus 272 ~R~~Gv~~~l~SLrs~~~~GIGdf~dl-~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~ 350 (978)
.|.|||++|||||||+ |||||||++ +.|+||++++|+++||||||+++++. ++|||||+|+||+||+|||++.
T Consensus 13 ~R~~Gvll~l~SL~s~--~GIGDfg~la~~~~d~~~~~g~~~wqllpl~p~~~~----~ssPYs~~S~~a~NplyI~le~ 86 (513)
T TIGR00217 13 KRKSGILLQLYSLPSE--WGIGDLGDGAYKFIDFLKAGSQSVWQIHALYPADFT----RSPPYSISSARALNVYYIDLEA 86 (513)
T ss_pred CCceEEEeccccCCCC--CCccChHHHHHHHHHHHHHcCCcEEEeCCCCCCCCC----CCCCcCchhcccccHHhcChhh
Confidence 5999999999999999 899999985 59999999999999999999999864 5788999999999999999999
Q ss_pred hcccCCHhHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhcc-c-cchhHHHHHHHhccccCccccchHHHHhh
Q 002027 351 LSEKMPEDIKKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDL-I-LNSSAFQNFFSENEDWLKPYAAFCFLRDF 428 (978)
Q Consensus 351 l~~~~~~~~~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~-~-~~~~~f~~F~~~~~~wL~~yA~F~aL~~~ 428 (978)
|++.. .+.............+.|||++|+.+|.++|+++|++|... . ....+|++||++++.||++||+|+||+++
T Consensus 87 l~e~~--~l~~~~~~~~~~~~~~~VDy~~v~~~K~~~L~~a~~~f~~~~~~~~~~~f~~F~~~~~~wL~dya~f~al~~~ 164 (513)
T TIGR00217 87 LDEFI--DLPLSLLKEAELRESDRVDYSKKIALKDTALKEAFLNFINRASADEVRSFAEFKKKQSDWLADFASFVAQKEA 164 (513)
T ss_pred ccccc--cCChhHHhhhhhcCCCcccHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 98862 11111111111112368999999999999999999998543 1 23468999999999999999999999999
Q ss_pred cC----CCCCCCCCcC-CCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeccccccCCCch
Q 002027 429 FD----TSDHSQWGRF-SHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSV 503 (978)
Q Consensus 429 ~~----~~~w~~Wp~~-~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSa 503 (978)
++ +.+|++||+. +.++++++++++ ++++++|+||+|+||+|++||+++++||+++||+|||||||||++|||
T Consensus 165 ~~~~~~~~~W~~WP~~~~~~~~~a~~~~~---~~~~~ei~f~~~lQ~~~~~Q~~~l~~yA~~~~I~L~gDlpi~v~~dsa 241 (513)
T TIGR00217 165 FFKESKNAGWVLWDKGIQKRNEPELFKLR---NILSKEIKFQEWLQWLFFSQFQALKRYANDMGIGLYGDLPVFVAYDSA 241 (513)
T ss_pred hCCCCCCCCcCCCCHhhcCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeCcceeCCCcH
Confidence 98 8899999974 889999999984 789999999999999999999999999999999999999999999999
Q ss_pred hhccCcccccccCcccCC------CCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeee
Q 002027 504 DTWVYPNLFRMNTSTGAP------PDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWE 577 (978)
Q Consensus 504 DvWa~p~lF~~d~~aGaP------PD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~ 577 (978)
|||++|++|++|.++|+| ||+||++|||||||+|||++|+++||+||++||++++++||++||||||||+|+|+
T Consensus 242 DvWa~~~~F~l~~~~GaP~~agvpPd~Fs~~GQ~WG~P~y~w~~l~~~gy~ww~~rlr~~~~~~d~lRIDHf~Gf~r~w~ 321 (513)
T TIGR00217 242 DVWADPELFCLRASAGAPKPAGLGPDYFLEQGQNWGLPPYDWNVLKARGYEWWIKRLGANMQYADILRIDHFRGFVSLWW 321 (513)
T ss_pred HHHhCHHHhCCCcccCCCCCCCCCCCcccccCCCCCCCCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEecchhhhceeee
Confidence 999999999999998999 99999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHH
Q 002027 578 LPEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKK 657 (978)
Q Consensus 578 IP~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~ 657 (978)
||.++.+|..|.|+++| | ++
T Consensus 322 IP~g~~ta~~G~wv~~P----------g-------------------------------------------------~~- 341 (513)
T TIGR00217 322 VPAGESTAFNGAWVHYP----------G-------------------------------------------------DD- 341 (513)
T ss_pred ecCCCCCCCCCeeEeCC----------H-------------------------------------------------HH-
Confidence 99999999999999985 1 11
Q ss_pred HHHHHhhhhhcccccchhhhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhh
Q 002027 658 IAAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFH 737 (978)
Q Consensus 658 i~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~ 737 (978)
||+++.
T Consensus 342 ------------------------l~~~l~-------------------------------------------------- 347 (513)
T TIGR00217 342 ------------------------FFNILA-------------------------------------------------- 347 (513)
T ss_pred ------------------------HHHHHH--------------------------------------------------
Confidence 232221
Q ss_pred hhhHHHHHhhhccccccccCCC-ccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCC-CCCCCCCcEEecCC
Q 002027 738 RQENLWRENALKTLPALLNSSD-MMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGI-PSQYNYMTVCAPSC 815 (978)
Q Consensus 738 r~~~~w~~~~~~~L~~l~~~t~-~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~~~f~~-p~~yp~~sVa~tsT 815 (978)
.+ +.+ |.|||||||+||++|+++|+++|||||||++|+++.+..+.. |++|+.+|||||||
T Consensus 348 --------~e---------~~~~~~vIaEDLG~v~~~Vr~ll~~~gipGmkVl~Fe~~~~~~~~~~P~~y~~~~v~ytgT 410 (513)
T TIGR00217 348 --------NE---------SKDNLKIIGEDLGTVPEEVSRLRDEFNFPGMKVLYFAFDFDSSNRNLPHNYPKNAIVYTGT 410 (513)
T ss_pred --------HH---------cCCCCcEEeeeCCCCCHHHHHHHHHcCCCCceEeEecccCCCCCCCCcccCCcCcEEEecC
Confidence 00 112 679999999999999999999999999999999986554544 99999999999999
Q ss_pred CCchhHHHHHhcCH--HHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccc
Q 002027 816 HDCSTLRAWWEEDE--ERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEET 893 (978)
Q Consensus 816 HD~~TlrgWW~~~~--~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~~~~~~~er 893 (978)
|||+|++|||.+.. +..++.+..+++.. + ..++.+++++.+++|+|.+||+||||+|+|+.+. |
T Consensus 411 HD~dt~~~w~~~l~~~~~~~~~~~~~~~~~---~---~~~~~~~l~~~~~~s~a~~~i~~lqDll~l~~e~--------r 476 (513)
T TIGR00217 411 HDNDLTLGEFLGISLDDYQKRYILHYLNCL---P---NFYVHWALIRSAMGSVNRNVIVYLQDLIGLGDEF--------S 476 (513)
T ss_pred CcchhHHHHHhcCCCchHHHHHHHHHcCCC---C---CcchHHHHHHHHHHhHHHHHHHHHHHHHcCCccc--------C
Confidence 99999999998744 44444555666643 1 1357899999999999999999999999998876 9
Q ss_pred cCCCCCCCCCcccccccChHhhhCChHHHHHHHHHHHHhCC
Q 002027 894 INDPTNPRHYWRYRVHVTLESLQKDKELKTTVKDLVCASGR 934 (978)
Q Consensus 894 iN~Pg~~~~nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR 934 (978)
||+|||.++||+|||+.+++++ ....+|+++++.+||
T Consensus 477 ~N~PGT~~~NW~~Rl~~~~~~~----~~~~~l~~l~~~~~r 513 (513)
T TIGR00217 477 ANIPGTTYDNWIFRLLESLLDA----FLSQNLSFITRLYGR 513 (513)
T ss_pred CcCCCCCCCCcceECCccccch----hhhHHHHHHHHHhCc
Confidence 9999999999999999876655 456779999999988
No 8
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=100.00 E-value=4.2e-117 Score=1116.63 Aligned_cols=542 Identities=25% Similarity=0.413 Sum_probs=454.8
Q ss_pred ccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCeeEEeccccccCCCccceEEeeecCccCCCCCCcccCHHH
Q 002027 218 IQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVGEFLD 297 (978)
Q Consensus 218 lp~~~~~~eYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~~~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GIGdf~d 297 (978)
+| .+++..|+-+....++.. .+-+++..|..|..|. ... ...|.|||++|||||||+.+||||||+|
T Consensus 129 Lp-~~Lp~GYH~L~l~~~~~~----~~~~LivaP~r~~~~~------~l~--~~~r~wG~~~qLYsLRS~~~~GIGDfgd 195 (1693)
T PRK14507 129 LA-IPLTPGYHRLTVTVGDLR----AEAWVIAAPQRCWRPP------ALA--EGARDWGLAAQLYGLRSARNWGIGDFGD 195 (1693)
T ss_pred cC-CCCCCeeEEEEEecCCCc----eEEEEEEeCcccCChh------hhc--cCCcceEEEeeeeeeeeCCCCCcccHHH
Confidence 66 678999999998753321 1234566777776442 111 1358899999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhhcccCC-HhHH-----HHHHHhhcccC
Q 002027 298 LKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQALSEKMP-EDIK-----KEIEKAKVQLD 371 (978)
Q Consensus 298 l~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l~~~~~-~~~~-----~~~~~~~~~l~ 371 (978)
|++||||++++|+++|||||||++++..+ .++|||||+|+||+||+|||++.|++... .... .++.+...+++
T Consensus 196 L~~~~d~la~~Ga~~lqlnPLhA~~p~~p-~~~SPYsp~Sr~alNPlYIdle~l~e~~~~~~~~~~~~~~~~~~~~~~l~ 274 (1693)
T PRK14507 196 LGRLVRDAALRGASFLGLSPLHALFPTDP-AKASPYSPSSRLFLNTLYIDVEAVPDFAECEAARLLVHAPEFQARLEALR 274 (1693)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCCCC-CCCCCcCcccccccChHhcCHhhccccccchhhhhhhcchhhhHHHhhcc
Confidence 99999999999999999999998877655 46899999999999999999999987531 1111 12222222333
Q ss_pred C-CCCCHHHHHHHHHHHHHHHHHhhhccc-----cchhHHHHHHHhccccCccccchHHHHhhcCCC-----CCCCCCc-
Q 002027 372 K-KDVDYEATLATKLAIARKVFNQEKDLI-----LNSSAFQNFFSENEDWLKPYAAFCFLRDFFDTS-----DHSQWGR- 439 (978)
Q Consensus 372 ~-~~vDY~~v~~~K~~~L~~~f~~~~~~~-----~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~~~~-----~w~~Wp~- 439 (978)
. +.|||++|+++|.++|+++|++|.+.. ....+|++||++++.||++||+||||+++|++. +|.+||+
T Consensus 275 ~~~~VDY~~V~~~K~~~Lr~af~~f~~~~~~~~~~~~~~F~~F~~~~g~wL~dyAlF~AL~e~~~~~~~~~w~W~~WPe~ 354 (1693)
T PRK14507 275 AAELVDYAGVAEAKFEVLEALWRHFRARHLERNTGRDAGFRAFRAEGGESLRSHALFEALQEHFRAEDAHWWGWPDWPEA 354 (1693)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHhcchHHHHHHHHHHHHHHhcCCCCCCCCccCCChh
Confidence 3 689999999999999999999986431 234689999999999999999999999999865 7899997
Q ss_pred CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcC--CeEeeccccccCCCchhhccCcccccccCc
Q 002027 440 FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKG--VVLKGDLPIGVDRNSVDTWVYPNLFRMNTS 517 (978)
Q Consensus 440 ~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~g--I~L~gDLpigv~~dSaDvWa~p~lF~~d~~ 517 (978)
++.++++++++++ ++++++|+||+|+||+|++||+++++||+++| |+|||||||||++||||||++|++|+++.+
T Consensus 355 ~r~~~~~av~~~~---~~~~~~v~F~~flQwla~~Ql~~~~~~A~~~GM~IgLigDLpVgV~~dsADvWa~p~lF~l~~~ 431 (1693)
T PRK14507 355 YRDPGTPAVRAFA---EEHAERVEYHEYLQWLADLQLAAAGERAQALGMRLGLYRDLAVGVDRGGSETWSHPELFANGAS 431 (1693)
T ss_pred hccCCHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEeeeceECCCcHHHhcCHhhhhcCCc
Confidence 5889999999985 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred ccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccceeecCCccc
Q 002027 518 TGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIGKFRPSIPLS 597 (978)
Q Consensus 518 aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~IP~~~~~g~~G~~~p~~p~~ 597 (978)
+|||||+||++|||||+|+|||++|+++||+||++|||++|++||++||||||||+|+|+||.++ ++..|.|+++|
T Consensus 432 aGAPPD~Fs~~GQ~WG~P~y~p~~L~~~gY~ww~~rlr~~m~~~g~lRIDH~lGl~RlW~IP~g~-ta~~G~yv~yP--- 507 (1693)
T PRK14507 432 IGAPPDELNPKGQDWGLPPFDPLELERDGYAPFRALLRANMRHAGALRIDHVMQLMRLFWIPLGR-SAREGAYVAYP--- 507 (1693)
T ss_pred cCCCCCcCccccccCCCcCcCHHHHHhcChHHHHHHHHHHHHHCCEEEeccHHhhhHhcccCCCC-CCCCCeEEECC---
Confidence 99999999999999999999999999999999999999999999999999999999999999988 88888888774
Q ss_pred HHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhcccccchhhh
Q 002027 598 QEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEKSMLLDSEDK 677 (978)
Q Consensus 598 ~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~i~~~l~~~~~~~~~~~~~~~ 677 (978)
| ++
T Consensus 508 -------~-------------------------------------------------~~--------------------- 510 (1693)
T PRK14507 508 -------F-------------------------------------------------EP--------------------- 510 (1693)
T ss_pred -------H-------------------------------------------------HH---------------------
Confidence 1 11
Q ss_pred HHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhhhhhHHHHHhhhccccccccC
Q 002027 678 TRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFHRQENLWRENALKTLPALLNS 757 (978)
Q Consensus 678 ~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~r~~~~w~~~~~~~L~~l~~~ 757 (978)
||+++. | + + +|
T Consensus 511 ----ll~~la---L-------------------------E--s----------------~r------------------- 521 (1693)
T PRK14507 511 ----MLAVLA---L-------------------------E--S----------------HR------------------- 521 (1693)
T ss_pred ----HHHHHH---H-------------------------H--H----------------hc-------------------
Confidence 222221 0 0 1 11
Q ss_pred CCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCCchhHHHHHhcCHHHHHHH--
Q 002027 758 SDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHDCSTLRAWWEEDEERRRRF-- 835 (978)
Q Consensus 758 t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~~~f~~p~~yp~~sVa~tsTHD~~TlrgWW~~~~~~~~~~-- 835 (978)
.+|+|||||||+||++|+++|+++||+||||++|+++.+++|+.|++|+.+||||||||||+|++|||++.+...++.
T Consensus 522 ~~~~VIgEDLGtVp~~Vr~~l~~~gi~Gm~VL~Fe~~~~~~~~~P~~y~~~sva~tgTHD~pTl~Gww~g~d~~lR~~Lg 601 (1693)
T PRK14507 522 NRCLVIGEDLGTVPEGFRDALARAGVLSYRILYFEREDGGAFKPPAAYPADALAAVTTHDLPTLVGWWRGVDTDLRQSLG 601 (1693)
T ss_pred CCCeEEEecCCCCCHHHHHHHHHcCCCCceEEEeeecCCCCCCCcccCcCCeEEECCCCCCHhHHHHHhCCCHHHHHHhc
Confidence 257899999999999999999999999999999999876689999999999999999999999999998754322211
Q ss_pred ---------------------HHHHhcCCCCCCC----------CCchHHHHHHHHHHHcCCCceeccchhhhhcCcccc
Q 002027 836 ---------------------FKNVVGSDALPPS----------QCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDY 884 (978)
Q Consensus 836 ---------------------~~~~l~~~g~~p~----------~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~ 884 (978)
+...|...|..+. ..+++++.+++++++.|||.|+|+||||+|++.+
T Consensus 602 l~~~~~~~~~~~~~R~~~r~~ll~~L~~~g~l~~~~~~~~~~~~~~~~~l~~al~r~la~s~S~L~~v~leDllg~~~-- 679 (1693)
T PRK14507 602 LYPDAERAEAQRTERVAERRRLLEALAAEGLLPSGEPPDAAPFPELTAELAEAVARYLARAPSALTAVQLEDVLGELE-- 679 (1693)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCccccccccccccccHHHHHHHHHHHhhCCcchhhcCHHHHhCCCC--
Confidence 1233443343221 1246789999999999999999999999999975
Q ss_pred CCCCCCccccCCCCCCCC--CcccccccChHhhhCChHHHHHHHHHHHHhCCCC
Q 002027 885 TTRPATEETINDPTNPRH--YWRYRVHVTLESLQKDKELKTTVKDLVCASGRSC 936 (978)
Q Consensus 885 ~~~~~~~eriN~Pg~~~~--nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~~ 936 (978)
|+|+|||.+. ||||||+.++|+|..++.+...++.|.+..++.+
T Consensus 680 --------~~N~PGT~~eyPNWrrrL~~~le~l~~~~~~~~l~~~l~~~R~~~~ 725 (1693)
T PRK14507 680 --------QANVPGTTEGYPNWRRKLDRNLEAIAAPPRLQAVGGALAKLRPRLS 725 (1693)
T ss_pred --------CCCCCCCCCCCCCcCccCCCCHHHHhhCHHHHHHHHHHHHhcCCCc
Confidence 8999999976 9999999999999999999998888877665544
No 9
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.2e-117 Score=1120.53 Aligned_cols=484 Identities=28% Similarity=0.510 Sum_probs=427.5
Q ss_pred ccceEEeeecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 272 WRGAGVAVPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 272 ~R~~Gv~~~l~SLrs~~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
.|.|||++|||||||+++||||||+||++|||||+++|+++|||||||++++..|+ ..|||||+|+|||||||||++.|
T Consensus 722 ~r~~Gv~~~l~sLrs~~~~GiGDf~dl~~~vd~~a~~G~~~~qilPl~~~~~~~p~-~~SPYsp~S~~alNplyI~~~~l 800 (1221)
T PRK14510 722 GRACGILMHLYSLRSQRPWGIGDFEELYALVDFLAEGGQSLWGVNPLHPLGLGDPE-RASPYQPSSRRAGNPLLISLDLL 800 (1221)
T ss_pred CcceEEEEccccCCCCCCCCccCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCC-CCCCccchhccccChhhcCHhhc
Confidence 58999999999999999999999999999999999999999999999999987654 46999999999999999999999
Q ss_pred cccC-CHhHHHHHH---HhhcccC-CCCCCHHHHHHHHHHHHHHHHHhhhcccc------chhHHHHHHHhccccCcccc
Q 002027 352 SEKM-PEDIKKEIE---KAKVQLD-KKDVDYEATLATKLAIARKVFNQEKDLIL------NSSAFQNFFSENEDWLKPYA 420 (978)
Q Consensus 352 ~~~~-~~~~~~~~~---~~~~~l~-~~~vDY~~v~~~K~~~L~~~f~~~~~~~~------~~~~f~~F~~~~~~wL~~yA 420 (978)
++.. ......... ....+++ .+.|||++|+++|+++|+++|++|++... ...+|++||++++.||++||
T Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~vDy~~v~~~K~~~L~~af~~f~~~~~~~~~~~~~~~f~~F~~~~g~wL~~yA 880 (1221)
T PRK14510 801 PEAGLLTENEAALGSAGPELAKLSALGSVDYAWVEALKEKLLRAAYEAFRDKLPRYPLDLSSPEFDRFIEEGGDWLRRYA 880 (1221)
T ss_pred cccccCcHHHhhhhhhhhhhhhcCCCCcccHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHhCchHHHHHH
Confidence 8862 011111111 1111223 37899999999999999999999865322 23579999999999999999
Q ss_pred chHHHHhhcCCCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeE--eeccccc
Q 002027 421 AFCFLRDFFDTSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVL--KGDLPIG 497 (978)
Q Consensus 421 ~F~aL~~~~~~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L--~gDLpig 497 (978)
+|+||+++|++.+|++||+ ++.++++++++++ ++|+++|+||+|+||+|++||+++++||+++||.| |||||||
T Consensus 881 ~F~aL~~~~~~~~W~~Wp~~~~~~~~~~~~~~~---~~~~~~i~f~~~lQ~~~~~Q~~~~~~~A~~~Gm~iGl~gDLpvg 957 (1221)
T PRK14510 881 IFKALKAKFPGKGWHQWPEEYRLRKPPALEAFA---EKYAEEVNYAKFLQYIADRQWQAAKDYAQEQGLSIGFYGDLAIG 957 (1221)
T ss_pred HHHHHHHHhCCCCccCCChhhccCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEeEEeeeeee
Confidence 9999999999999999997 5899999999985 67999999999999999999999999999999866 9999999
Q ss_pred cCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeee
Q 002027 498 VDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWE 577 (978)
Q Consensus 498 v~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~ 577 (978)
|++||||||++|++|+++.++|||||+||++|||||+|+|||++|+++||+||++|||+++++||+|||||||||+|+|+
T Consensus 958 v~~dsadvWa~~~~f~l~~~~GaPPD~fs~~GQ~WG~P~y~w~~l~~~gy~~w~~rlr~~~~~~~~lRIDH~~G~~r~W~ 1037 (1221)
T PRK14510 958 VAPDGADAWAERSCFALDVSIGAPPDYFNPEGQNWGLPPYDPRALRRDGYRWFIERIRANMRHAGALRIDHVRGLERLFE 1037 (1221)
T ss_pred eCCCcHHHhcCHHHhcCCCccCCCCCcCCcccccCCCcCcCHHHHHhcCcHHHHHHHHHHHHhCCeEEeccHHhhHHhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccceeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHH
Q 002027 578 LPEHAMTGLIGKFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKK 657 (978)
Q Consensus 578 IP~~~~~g~~G~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~ 657 (978)
|| +..+|..|.|+++| | ++
T Consensus 1038 IP-~~~~a~~G~~v~~P----------~-------------------------------------------------~~- 1056 (1221)
T PRK14510 1038 VP-QGASAKEGAYLKGP----------G-------------------------------------------------EE- 1056 (1221)
T ss_pred CC-CCCCCCCCeEEECC----------H-------------------------------------------------HH-
Confidence 99 77789999998874 1 11
Q ss_pred HHHHHhhhhhcccccchhhhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhh
Q 002027 658 IAAKLKTCAEKSMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFH 737 (978)
Q Consensus 658 i~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~ 737 (978)
||+++. .++ +
T Consensus 1057 ------------------------l~~~l~------------------------------~e~----------------~ 1066 (1221)
T PRK14510 1057 ------------------------LFGQVA------------------------------LES----------------Q 1066 (1221)
T ss_pred ------------------------HHHHHH------------------------------HHh----------------C
Confidence 222221 001 1
Q ss_pred hhhHHHHHhhhccccccccCCCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCCCCCCCCCCCCCcEEecCCCC
Q 002027 738 RQENLWRENALKTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGLEFGIPSQYNYMTVCAPSCHD 817 (978)
Q Consensus 738 r~~~~w~~~~~~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~~~f~~p~~yp~~sVa~tsTHD 817 (978)
.++|+|||||||+||++|+++|+++||+||||++|+++.++.|++|++||++|||||||||
T Consensus 1067 -------------------r~~~~vIgEDLG~vp~~v~~~l~~~gi~g~~Vl~Fe~~~~~~~~~p~~~~~~~va~t~THD 1127 (1221)
T PRK14510 1067 -------------------RAQCPVIGEDLGTIPSGVRELLAILGILSYRVLQFERLGEGNFLPPPLYNALAAAYVGTHD 1127 (1221)
T ss_pred -------------------ccCCcEEEeeCCcCCHHHHHHHHHcCCCccEEEEeCccCCCCCCChhhCCCCcEEECCCCC
Confidence 2368899999999999999999999999999999999876789999999999999999999
Q ss_pred chhHHHHHhcCHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHcCCCceeccchhhhhcCccccCCCCCCccccCCC
Q 002027 818 CSTLRAWWEEDEERRRRFFKNVVGSDALPPSQCLPDITHFILRQHVESPSMWAIFPLQDLLALKEDYTTRPATEETINDP 897 (978)
Q Consensus 818 ~~TlrgWW~~~~~~~~~~~~~~l~~~g~~p~~~~~~~~~~ii~~~~~S~s~l~i~plqD~L~l~~~~~~~~~~~eriN~P 897 (978)
|+||+|||++.+...++.+ + ++++|++++++|+|+|||+||||+|++. +|||+|
T Consensus 1128 ~~Tl~Gww~~~d~~~r~~l----~------------~~~~~~~~~~~s~s~l~i~plqD~lg~~----------~r~N~P 1181 (1221)
T PRK14510 1128 LPTLAGWWEGVDLSEKEQL----G------------AAEAVIEMLARSPAILVIIQLQDLLGSN----------VRMNLP 1181 (1221)
T ss_pred CHHHHHHHHCCCHHHHHHh----h------------HHHHHHHHHHhCCchheeecHHHhhCCc----------cCccCC
Confidence 9999999998666555433 2 5899999999999999999999999943 499999
Q ss_pred CCCCC--CcccccccChHhhhCChHHHHHHHHHHHHhCCC
Q 002027 898 TNPRH--YWRYRVHVTLESLQKDKELKTTVKDLVCASGRS 935 (978)
Q Consensus 898 g~~~~--nW~~Rl~~~le~L~~~~~~~~~i~~l~~~~gR~ 935 (978)
||..+ |||+|||.+++++..+++++++|+.|++.++|.
T Consensus 1182 GT~~~~~nWR~rl~~~l~~~~~~~~~~~~l~~l~~~~~r~ 1221 (1221)
T PRK14510 1182 GTIRENPNWRRKLSAPVERLTLTQRACARLRGLAEKRGRL 1221 (1221)
T ss_pred CCCCCCCCcccccccChhhhccCHHHHHHHHHHHHHhCCC
Confidence 99965 599999999999999999999999999999984
No 10
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-114 Score=989.83 Aligned_cols=496 Identities=33% Similarity=0.537 Sum_probs=420.2
Q ss_pred ccceEEeeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhh
Q 002027 272 WRGAGVAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQA 350 (978)
Q Consensus 272 ~R~~Gv~~~l~SLrs~~~~GIGdf~d-l~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~ 350 (978)
.+.||+.|+||++|++.+|||||||| ++.|+|+++++||++|||||||+|++.. ..+|||||+||+|+||+|||++.
T Consensus 11 ~~~~g~~v~L~~~~~~~~~GIGDfgdla~~~~d~~~~~g~~~~qi~Plh~~~~~~--~~~SPYs~~S~~a~N~~~Id~~~ 88 (520)
T COG1640 11 SMKWGSGVQLYSLRLPGSWGIGDFGDLAYLFVDFLARHGQDYWQILPLHATGPAY--EEDSPYSPSSRRALNPLYIDVEA 88 (520)
T ss_pred cccccceeEEeeeccCCCCCccchhhHHHHHHHHHHHccCCeEEeccCCcccccc--cCCCCCCchhhhccCceeecHHH
Confidence 36789999999999999999999998 6666677779999999999999999654 35789999999999999999999
Q ss_pred hcccCCHhH-HHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHhccccCccccchHHHHhhc
Q 002027 351 LSEKMPEDI-KKEIEKAKVQLDKKDVDYEATLATKLAIARKVFNQEKDLILNSSAFQNFFSENEDWLKPYAAFCFLRDFF 429 (978)
Q Consensus 351 l~~~~~~~~-~~~~~~~~~~l~~~~vDY~~v~~~K~~~L~~~f~~~~~~~~~~~~f~~F~~~~~~wL~~yA~F~aL~~~~ 429 (978)
|++.. ..+ .+++..+......+.|||+.|...|+++|+++|+.|++.....++|.+||++++.||.+||+|+||++++
T Consensus 89 l~e~~-~~~~~~~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~~~~~~f~~F~~~~~~wL~d~A~F~Al~e~~ 167 (520)
T COG1640 89 LPEFQ-DFLLDKDLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRKEREKDFAAFCQEEGYWLDDYALFMALKEHF 167 (520)
T ss_pred hhhhh-hhccHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhccchhHHHHHHHHHHHHh
Confidence 98861 111 1222333222223799999999999999999999987764445799999999999999999999999999
Q ss_pred CCCCCCCCCc-CCCCCHHHHHHHHhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEeeccccccCCCchhhccC
Q 002027 430 DTSDHSQWGR-FSHYSKDKLAKLISEDSLHYDIIRFHYYVQFHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVY 508 (978)
Q Consensus 430 ~~~~w~~Wp~-~~~~~~~~l~~~~~~~~~~~~~i~f~~~lQ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~ 508 (978)
+..+|..||+ ++.++.+++.++. ++|+++|.||+|+||+|++||+++++||+++||+|+|||||||+.||||||++
T Consensus 168 ~~~~W~~Wp~~~~~~~~~~~~~~~---~~~~eei~f~~~lQ~~~~~Q~~~~k~~A~~~~I~i~gDLpv~va~~saDvW~~ 244 (520)
T COG1640 168 HAAGWQVWPDSYRRRDLSAVSAFI---ELHAEEVDFHRFLQWLFFRQLAALKRYANDMGIGIIGDLPVGVAQDSADVWAN 244 (520)
T ss_pred cccccCCCChhhhccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceEeecccceecCCchhhhcC
Confidence 9999999997 4778899999885 78999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHHHHHHhccCCEEEeccccccceeeeecCCCcccccc
Q 002027 509 PNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRARLTQMSKYFTAYRIDHILGFFRIWELPEHAMTGLIG 588 (978)
Q Consensus 509 p~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~GffR~W~IP~~~~~g~~G 588 (978)
|++|+++.+||||||.||++|||||+|+|||++|+++||+||++|||+++++||+|||||||||||+|+||.|+.++..|
T Consensus 245 ~~~f~~~~~~GaPPD~f~~~GQ~Wg~p~yn~~~l~~~~y~wwierlr~~~~~~~~lRIDHf~Gl~rlW~ip~g~~~a~g~ 324 (520)
T COG1640 245 PEYFCLDESAGAPPDVFNAQGQDWGLPPYNPEALKKDGYDWWIERLRANLKLYGILRIDHFRGLFRLWEIPYGEDTAQGG 324 (520)
T ss_pred cccccccccCCCCCCcccccccccCCCCCCHHHHHHcccHHHHHHHHHHHHhcCeeeeeeecchhhheeeeCCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred eeecCCcccHHHHHhccccccccccccchhhhhhHHhhCCchHHHHHhhhccccCCcceeccccchHHHHHHHHhhhhhc
Q 002027 589 KFRPSIPLSQEELEREGIWDFDRLTRPYIRLEHLQEKFGSSWTYIAANFLSEFQKGRYEFTEDCNTEKKIAAKLKTCAEK 668 (978)
Q Consensus 589 ~~~p~~p~~~~el~~~G~~~~~r~~~p~i~~~~l~~~fg~~~~~i~~~fl~~~~~g~y~~~~~~~~e~~i~~~l~~~~~~ 668 (978)
+|.+.+ | ++
T Consensus 325 ~~~~~~-------------------------------------------------~-----------~~----------- 333 (520)
T COG1640 325 YWRYPP-------------------------------------------------G-----------KL----------- 333 (520)
T ss_pred cccCCH-------------------------------------------------H-----------HH-----------
Confidence 877653 0 00
Q ss_pred ccccchhhhHHHHHHHHHhhceeeecCCCCCCcccccccccCCccccCchhhhhhHHHHHHHhhhhhhhhhhHHHHHhhh
Q 002027 669 SMLLDSEDKTRRDLFDLIQNIVLIRDPEDSKKFYPRFNLEDTSSFMDLDDHRCICKNVLKRLYYDYYFHRQENLWRENAL 748 (978)
Q Consensus 669 ~~~~~~~~~~~~~L~~l~~~v~l~~~~~~~~~~~pr~~~~~t~~~~~L~~~~~~~~~~~~~l~~~~~~~r~~~~w~~~~~ 748 (978)
|+.++. + + .
T Consensus 334 -------------l~~l~l-----------------------------e--~----------------~----------- 342 (520)
T COG1640 334 -------------LFILAL-----------------------------E--A----------------L----------- 342 (520)
T ss_pred -------------HHHHHH-----------------------------H--h----------------h-----------
Confidence 111110 0 0 0
Q ss_pred ccccccccCCCccEeeecCCCCCCcHHHHHHHhCCCceEEeeecCCCCC--CCCCCCCCCCCcEEecCCCCchhHHHHHh
Q 002027 749 KTLPALLNSSDMMACGEDLGLIPSCVHPVMEELGLIGLRIQRMPSEPGL--EFGIPSQYNYMTVCAPSCHDCSTLRAWWE 826 (978)
Q Consensus 749 ~~L~~l~~~t~~lv~gEDLG~vp~~V~~~l~~lgi~glrV~~f~~~~~~--~f~~p~~yp~~sVa~tsTHD~~TlrgWW~ 826 (978)
.++|+|||||||+||++|+++|+++||+||||++|+.+... .|.++..|+++||+||||||||||+|||+
T Consensus 343 --------~~~~~vIgEDLGtvp~eV~~~l~~~gi~g~kIl~Fe~~~~~~~~~~P~~~~~~nsva~tsTHD~ptl~gww~ 414 (520)
T COG1640 343 --------RANMLVIGEDLGTVPAEVRDLLAHLGIPGMKILRFEADNEDPSPFLPPNYYPPNSVATTSTHDLPTLRGWWE 414 (520)
T ss_pred --------hcCCcEEecccCCCCHHHHHHHHHcCCCceEEEeecccCCcCCCCCChhhcccceeEEeccCCChhHHHHHh
Confidence 13699999999999999999999999999999999776322 58888888899999999999999999999
Q ss_pred cCHHHHHHHHHHHhcCCCC-CCCCCchHHHHHHHHHH---HcCCCceeccchhhhhcCccccCCCCCCccccCCCCCCCC
Q 002027 827 EDEERRRRFFKNVVGSDAL-PPSQCLPDITHFILRQH---VESPSMWAIFPLQDLLALKEDYTTRPATEETINDPTNPRH 902 (978)
Q Consensus 827 ~~~~~~~~~~~~~l~~~g~-~p~~~~~~~~~~ii~~~---~~S~s~l~i~plqD~L~l~~~~~~~~~~~eriN~Pg~~~~ 902 (978)
+.+.+.++++..+++.... .-......+.+.+++.. +.|.|..+|+++||++.|+.+. |||+|||+.+
T Consensus 415 ~~~~~~~~~~~~~l~~~~~~~~~~~~e~l~~~~~~~~~~~~~s~s~~~l~~~ql~~~lg~~~--------~~N~PgT~~~ 486 (520)
T COG1640 415 ELDEELRRRLGLLLPEAYDDRLAAIAELLVWLHLRSALMRYLSVSDSALLSLQLEDELGSEE--------RMNIPGTIYP 486 (520)
T ss_pred CCCHHHHHHHHHhhhhhhhhHHHhHHHHHHHHHHHhhHHHHhccCccceeccchhhcccccc--------ccCCCCCCCC
Confidence 9998887776555532111 00011234667777777 8899999999999999998765 9999999999
Q ss_pred CcccccccChHhhhCChHHHHHHHHHHHH
Q 002027 903 YWRYRVHVTLESLQKDKELKTTVKDLVCA 931 (978)
Q Consensus 903 nW~~Rl~~~le~L~~~~~~~~~i~~l~~~ 931 (978)
||+|||+.+++++..++.++..++.+.+.
T Consensus 487 NW~~Rl~~~~~~~~~~~~l~~~~~~~~r~ 515 (520)
T COG1640 487 NWRWRLHCSLETLFLNEDLNELLKLYGRA 515 (520)
T ss_pred CceeecCcchhhhhhhHHHHHHHHHHHHH
Confidence 99999999999997666655544444443
No 11
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.81 E-value=1.3e-19 Score=170.16 Aligned_cols=101 Identities=68% Similarity=1.282 Sum_probs=88.8
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecCCC
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGKK 103 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE~g~N 103 (978)
+|+|+|+|+|.+||+|+|+||+++||+|++.+|++|++.+.++++.|+++|.+|.+..|||||++++++|.+++||+|.|
T Consensus 1 ~l~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v~~~~~~~~~wE~g~n 80 (101)
T cd05815 1 TLSFKLPYYTQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYVVDDRKSVLRSESGEK 80 (101)
T ss_pred CEEEEEEEEccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEEEcCCCcEEEeecCCC
Confidence 48999999999999999999999999999999999987543434679999999998899999999877788889999999
Q ss_pred ceEEcCCCCCCCceEEEeccc
Q 002027 104 RKLLLHETIKDGEVVELHDLW 124 (978)
Q Consensus 104 R~l~l~~~~~~g~~v~v~D~W 124 (978)
|.+.+|.....+..++|.|.|
T Consensus 81 r~~~~~~~~~~~~~~~i~d~w 101 (101)
T cd05815 81 RKLVLPEGLQGGESVELRDLW 101 (101)
T ss_pred EeEECCccccCCcEEEEeeeC
Confidence 999988743345678999988
No 12
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.80 E-value=1.3e-19 Score=168.44 Aligned_cols=88 Identities=31% Similarity=0.598 Sum_probs=75.7
Q ss_pred ceEEEEEEEecccCCCCEEEEecCCcccCCCCcccccccccc----CCCcEEEEEeccCCCCceeeeEEEECCCCCeeEe
Q 002027 166 SVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQRGDFPIKYKYCKSGKTGNISLE 241 (978)
Q Consensus 166 ~~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~----~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE 241 (978)
++.|+|+|++ .+.+||+|+|+||+++||+|++++|++|.+. .++.|+++|.+| .+.+|||||++++.+|++.||
T Consensus 1 ~v~V~F~v~~-~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp-~~~~~eYKy~i~~~~g~~~WE 78 (96)
T PF00686_consen 1 QVSVTFRVNY-QTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLP-AGTPFEYKYVIKDADGNVIWE 78 (96)
T ss_dssp EEEEEEEESE----TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEE-TTSEEEEEEEEEETTSEEEE-
T ss_pred CEEEEEEEEe-ECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECc-CCCEEEEEEEEEeCCCCEEEC
Confidence 4789999976 5699999999999999999999999999986 469999999999 577999999999998999999
Q ss_pred eCCCeeEEecCCCC
Q 002027 242 TGANRNLNVDFSNN 255 (978)
Q Consensus 242 ~g~NR~~~~p~~~~ 255 (978)
+|+||.+.+|..+.
T Consensus 79 ~g~nR~~~~~~~~~ 92 (96)
T PF00686_consen 79 SGENRVLTVPSSGS 92 (96)
T ss_dssp SSSEEEEE--SSSE
T ss_pred CCCCEEEECCCCCc
Confidence 99999999997754
No 13
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=99.78 E-value=3.8e-19 Score=165.37 Aligned_cols=89 Identities=36% Similarity=0.670 Sum_probs=75.1
Q ss_pred eEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCC-CCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeec
Q 002027 22 SLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQ-DDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEM 100 (978)
Q Consensus 22 ~~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~-~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE~ 100 (978)
++.|+|+|++.|++||+|+|+||+++||+|++++|++|.++++ ..+++|+++|.+|.+..|||||++.+.+|.+ .||.
T Consensus 1 ~v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i~~~~g~~-~WE~ 79 (96)
T PF00686_consen 1 QVSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVIKDADGNV-IWES 79 (96)
T ss_dssp EEEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEEEETTSEE-EE-S
T ss_pred CEEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEEEeCCCCE-EECC
Confidence 5899999988999999999999999999999999999999764 2347799999999999999999999877755 6999
Q ss_pred CCCceEEcCCC
Q 002027 101 GKKRKLLLHET 111 (978)
Q Consensus 101 g~NR~l~l~~~ 111 (978)
|+||.+.++.+
T Consensus 80 g~nR~~~~~~~ 90 (96)
T PF00686_consen 80 GENRVLTVPSS 90 (96)
T ss_dssp SSEEEEE--SS
T ss_pred CCCEEEECCCC
Confidence 99999999873
No 14
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.77 E-value=1.3e-18 Score=162.95 Aligned_cols=97 Identities=41% Similarity=0.707 Sum_probs=85.6
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCC-CCeeEeeCCCe
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKT-GNISLETGANR 246 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~-g~v~WE~g~NR 246 (978)
+|+|+|+++++.+||+|+|+||+++||+|++++|++|++..++.|++++++|+.+.+|||||++++.+ +.+.||.|.||
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~~p~~~~~ieYKyvi~~~~~~~~~WE~g~nr 80 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFPIWEADIDISKDSFPFEYKYIIANKDSGVVSWENGPNR 80 (99)
T ss_pred CEEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCCcEEEEEEeCCCCccEEEEEEEEeCCCCcEEEEcCCCe
Confidence 38999999999999999999999999999999999999999999999999996666899999999987 88999999999
Q ss_pred eEEecCCCCCCeeEEecc
Q 002027 247 NLNVDFSNNQPRYIFLSD 264 (978)
Q Consensus 247 ~~~~p~~~~~~~~~~~~~ 264 (978)
.+.+|........++++|
T Consensus 81 ~~~~p~~~~~~~~~~~~~ 98 (99)
T cd05816 81 ELSAPSLKGESSTLIVSD 98 (99)
T ss_pred EEECCccCCCCceEEEeC
Confidence 999998655323344444
No 15
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.77 E-value=2e-18 Score=159.79 Aligned_cols=95 Identities=32% Similarity=0.659 Sum_probs=84.6
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecCC
Q 002027 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGK 102 (978)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE~g~ 102 (978)
++|+|+|++.|.+||+|+|+||+++||+|++.+|++|++.+++. |++++.+|.+..+||||++.+.+|.+. ||.+.
T Consensus 1 v~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~---W~~~v~l~~~~~~eYKy~~~~~~~~~~-WE~~~ 76 (95)
T cd05808 1 VAVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAATYPV---WSGTVDLPAGTAIEYKYIKKDGSGTVT-WESGP 76 (95)
T ss_pred CeEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCC---EEEEEEeCCCCeEEEEEEEECCCCcEE-EecCC
Confidence 47999999999999999999999999999999999999877654 999999999999999999987667665 99999
Q ss_pred CceEEcCCCCCCCceEEEecccC
Q 002027 103 KRKLLLHETIKDGEVVELHDLWQ 125 (978)
Q Consensus 103 NR~l~l~~~~~~g~~v~v~D~W~ 125 (978)
||.+.+|. +..+++.|.|.
T Consensus 77 nr~~~~~~----~~~~~i~d~w~ 95 (95)
T cd05808 77 NRTATTPA----SGTLTLNDTWR 95 (95)
T ss_pred CEEEECCC----CccEEEEeEEC
Confidence 99999876 23678999984
No 16
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.77 E-value=2.9e-18 Score=162.27 Aligned_cols=103 Identities=26% Similarity=0.554 Sum_probs=87.7
Q ss_pred CCceEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCC-CCCccEEEEEEcCCCceEEEEEEEEeCCCCeEE
Q 002027 19 SVKSLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQ-DDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLR 97 (978)
Q Consensus 19 ~p~~~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~-~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~ 97 (978)
+|++|+|+|+|+++|.+||+|+|+||+++||+|++.+|++|++... .+++.|++++.+|.+..|+|||++++.+|.+ +
T Consensus 3 ~~~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~~~~~~~~-~ 81 (106)
T cd05811 3 TATTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIRKESDGSV-T 81 (106)
T ss_pred CCCEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEEEcCCCcE-E
Confidence 5678999999999999999999999999999999999999987531 2235699999999999999999998766655 6
Q ss_pred eecCCCceEEcCCCCCCCceEEEeccc
Q 002027 98 WEMGKKRKLLLHETIKDGEVVELHDLW 124 (978)
Q Consensus 98 WE~g~NR~l~l~~~~~~g~~v~v~D~W 124 (978)
||.+.||.+.+|.. .+..+++.|.|
T Consensus 82 WE~~~nr~~~~~~~--~~~~~~~~~~~ 106 (106)
T cd05811 82 WESDPNRSYTVPSG--CGTTATVDDSW 106 (106)
T ss_pred EecCCCeEEECCCC--CCcceEEeccC
Confidence 99999999999874 23457777776
No 17
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.75 E-value=3.6e-18 Score=160.44 Aligned_cols=90 Identities=22% Similarity=0.431 Sum_probs=80.6
Q ss_pred CceEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccc----cCCCcEEEEEeccCCCCceeeeEEEECCCCCeeE
Q 002027 165 DSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSY----AGESVWEADCVIQRGDFPIKYKYCKSGKTGNISL 240 (978)
Q Consensus 165 ~~~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~----~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~W 240 (978)
++++|+|+|+++++.+||+|+|+||+++||+|++++|+.|.+ ..++.|++++++| .+.+|||||++++.+|.+.|
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp-~~~~~eyK~~~~~~~~~~~W 79 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVP-AGTTIEFKFIKKNGDNTVTW 79 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcC-CCCcEEEEEEEECCCCCEEE
Confidence 368999999988889999999999999999999999997653 4778999999999 55699999999998899999
Q ss_pred eeCCCeeEEecCCCC
Q 002027 241 ETGANRNLNVDFSNN 255 (978)
Q Consensus 241 E~g~NR~~~~p~~~~ 255 (978)
|.|+||.+.+|..+.
T Consensus 80 E~g~nr~~~~p~~~~ 94 (101)
T cd05807 80 ESGSNHTYTAPSSTT 94 (101)
T ss_pred EeCCCEEEeCCCCCc
Confidence 999999999997654
No 18
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=99.72 E-value=2.5e-17 Score=152.47 Aligned_cols=85 Identities=32% Similarity=0.544 Sum_probs=78.1
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR 246 (978)
++|+|+|++. +.+||+|+|+||+++||+|++.+|++|++..++.|++++++| .+.+|||||++.+.+|.+.||.|+||
T Consensus 1 v~v~F~v~~~-t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~-~~~~~eYKy~~~~~~~~~~WE~~~nr 78 (95)
T cd05808 1 VAVTFNVTAT-TVWGQNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLP-AGTAIEYKYIKKDGSGTVTWESGPNR 78 (95)
T ss_pred CeEEEEEEEE-CCCCCEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeC-CCCeEEEEEEEECCCCcEEEecCCCE
Confidence 4699999995 499999999999999999999999999999999999999999 45589999999987788999999999
Q ss_pred eEEecCC
Q 002027 247 NLNVDFS 253 (978)
Q Consensus 247 ~~~~p~~ 253 (978)
.+.+|..
T Consensus 79 ~~~~~~~ 85 (95)
T cd05808 79 TATTPAS 85 (95)
T ss_pred EEECCCC
Confidence 9998764
No 19
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.72 E-value=3.4e-17 Score=151.62 Aligned_cols=92 Identities=38% Similarity=0.755 Sum_probs=81.7
Q ss_pred EEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccC-CCCCccEEEEEEcCC--CceEEEEEEEEeCCCCeEEeecC
Q 002027 25 VKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVH-QDDELIWSGSIAVPI--GFSCEYSYYVVDDRKNLLRWEMG 101 (978)
Q Consensus 25 V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~-~~~~~~W~~~V~lp~--~~~~eYKYvv~d~~g~~~~WE~g 101 (978)
|+|+|++.|.+||+|+|+||+++||+|++.+|++|++++ ++ .|++++.+|. +..|+|||++++.+ ..++||.+
T Consensus 2 v~f~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~---~W~~~v~~~~~~~~~~~yKy~~~~~~-~~~~wE~~ 77 (96)
T cd05467 2 VRFQVRCTTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYP---LWTGEIPLPAPEGQVIEYKYVIVDDD-GNVQWESG 77 (96)
T ss_pred EEEEEEEECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCC---cEEEEEEecCCCCCeEEEEEEEECCC-CCEEeccC
Confidence 799999999999999999999999999999999999987 54 4999999998 88999999998655 45679999
Q ss_pred CCceEEcCCCCCCCceEEEeccc
Q 002027 102 KKRKLLLHETIKDGEVVELHDLW 124 (978)
Q Consensus 102 ~NR~l~l~~~~~~g~~v~v~D~W 124 (978)
+||.+.++.. ..++|.|.|
T Consensus 78 ~~r~~~~~~~----~~~~i~d~w 96 (96)
T cd05467 78 SNRVLTVPST----SSLIVVDDW 96 (96)
T ss_pred CCeEEEcCCC----CcEEEEeeC
Confidence 9999998762 367888887
No 20
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.71 E-value=2.7e-17 Score=155.15 Aligned_cols=89 Identities=20% Similarity=0.346 Sum_probs=79.6
Q ss_pred ceEEEEEEEe-cccCCCCEEEEecCCcccCCCCcccc--c-cccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEe
Q 002027 166 SVLVRFKICI-PNIEEDASVYVIGSTSMLGQWKLQNG--L-KLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLE 241 (978)
Q Consensus 166 ~~~V~F~v~~-~~~~~Gq~v~IvGs~~eLG~W~~~~a--v-~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE 241 (978)
+++|+|.|++ +++.+||+|+|+||+++||+|+++++ + +|....++.|++++++| .+.+|||||++++.+|.+.||
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp-~~~~veyK~v~~~~~g~v~WE 80 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVP-AGTYIEFKFLKAPADGTGTWE 80 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcC-CCCcEEEEEEEECCCCCEEEE
Confidence 4889999976 46799999999999999999999754 4 78888999999999999 567999999999988999999
Q ss_pred eCCCeeEEecCCCC
Q 002027 242 TGANRNLNVDFSNN 255 (978)
Q Consensus 242 ~g~NR~~~~p~~~~ 255 (978)
+|+||.+.+|..+.
T Consensus 81 ~g~Nr~~~~p~~~~ 94 (103)
T cd05820 81 GGSNHAYTTPSGGT 94 (103)
T ss_pred eCCCEeEECCCCCc
Confidence 99999999997654
No 21
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=99.71 E-value=4.5e-17 Score=154.16 Aligned_cols=90 Identities=20% Similarity=0.450 Sum_probs=81.3
Q ss_pred CCceEEEEEEEecccCCCCEEEEecCCcccCCCCcccccccccc----CCCcEEEEEeccCCCCceeeeEEEECCCCCee
Q 002027 164 EDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA----GESVWEADCVIQRGDFPIKYKYCKSGKTGNIS 239 (978)
Q Consensus 164 ~~~~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~----~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~ 239 (978)
++.++|+|++.+++ .+||.|+|+||+++||+|++++|++|++. .++.|++++++| .+.+|+|||++++.+|.+.
T Consensus 4 ~~~v~V~F~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp-~~~~veYKy~~~~~~~~~~ 81 (106)
T cd05811 4 ATTVAVTFNERVTT-SYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLP-AGTSFEYKFIRKESDGSVT 81 (106)
T ss_pred CCEEEEEEEEeeEc-CCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeC-CCCcEEEEEEEEcCCCcEE
Confidence 45699999999986 89999999999999999999999999864 468999999999 4668999999998888999
Q ss_pred EeeCCCeeEEecCCCC
Q 002027 240 LETGANRNLNVDFSNN 255 (978)
Q Consensus 240 WE~g~NR~~~~p~~~~ 255 (978)
||+|+||.+.+|..+.
T Consensus 82 WE~~~nr~~~~~~~~~ 97 (106)
T cd05811 82 WESDPNRSYTVPSGCG 97 (106)
T ss_pred EecCCCeEEECCCCCC
Confidence 9999999999997754
No 22
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.71 E-value=3.1e-17 Score=153.07 Aligned_cols=88 Identities=24% Similarity=0.422 Sum_probs=79.7
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCC---CeeEeeC
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTG---NISLETG 243 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g---~v~WE~g 243 (978)
|.|+|.+...++.+||.|+|+||+++||+|++++|++|.+..++.|++++++| .+.+|||||++++.++ .+.||+|
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp-~~~~veyKyv~~~~~~~~~~v~WE~g 79 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLP-ASTNVEWKCLKRNETNPTAGVQWQGG 79 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcC-CCCeEEEEEEEEcCCCCcceEEEeeC
Confidence 56999988777799999999999999999999999999999999999999999 5679999999998765 5899999
Q ss_pred CCeeEEecCCCC
Q 002027 244 ANRNLNVDFSNN 255 (978)
Q Consensus 244 ~NR~~~~p~~~~ 255 (978)
+||.+.+|....
T Consensus 80 ~Nr~~~~p~~~~ 91 (97)
T cd05810 80 GNNQLTTGNSTA 91 (97)
T ss_pred CCEEEeCCCCCc
Confidence 999999997643
No 23
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=99.70 E-value=5.5e-17 Score=152.43 Aligned_cols=99 Identities=19% Similarity=0.379 Sum_probs=81.6
Q ss_pred ceEEEEEEEE-EECCCCCEEEEEeccCCcCCCCCCCceeccccC-CCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEe
Q 002027 21 KSLTVKFRIP-YYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVH-QDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRW 98 (978)
Q Consensus 21 ~~~~V~F~V~-~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~-~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~W 98 (978)
++++|+|+|+ ..|.+||+|+|+||+++||+|++.+|+.|.+.. ...++.|++++++|.+..|||||++++.+|.+. |
T Consensus 1 ~~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~~~~~~~~~-W 79 (101)
T cd05807 1 DQVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIKKNGDNTVT-W 79 (101)
T ss_pred CcEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEEECCCCCEE-E
Confidence 4699999997 559999999999999999999999999765432 233467999999999999999999998777665 9
Q ss_pred ecCCCceEEcCCCCCCCceEEEeccc
Q 002027 99 EMGKKRKLLLHETIKDGEVVELHDLW 124 (978)
Q Consensus 99 E~g~NR~l~l~~~~~~g~~v~v~D~W 124 (978)
|.|.||.+.+|.. . ...+.++|
T Consensus 80 E~g~nr~~~~p~~-~---~~~~~~~~ 101 (101)
T cd05807 80 ESGSNHTYTAPSS-T---TGTIRVNW 101 (101)
T ss_pred EeCCCEEEeCCCC-C---ceEEEeeC
Confidence 9999999999872 2 23555555
No 24
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.70 E-value=8.9e-17 Score=148.57 Aligned_cols=82 Identities=24% Similarity=0.476 Sum_probs=73.8
Q ss_pred eEEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecC
Q 002027 22 SLTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMG 101 (978)
Q Consensus 22 ~~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE~g 101 (978)
.++|+|+|+|.|.+||+|+|+||+++||+|+ ++++|+++. + .|++++++|.+..|||||++.+.+|.+ .||.|
T Consensus 1 ~~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~--~~~~l~~~~-~---~W~~~~~l~~~~~ieyKy~~~~~~~~v-~WE~g 73 (92)
T cd05818 1 KVKLQVRLDHQVKFGEHVAILGSTKELGSWK--KKVPMNWTE-N---GWVCDLELDGGELVEYKFVIVKRDGSV-IWEGG 73 (92)
T ss_pred CEEEEEEEEEEcCCCCEEEEEeChHHHCCCC--CCCccccCC-C---CEEEEEEeCCCCcEEEEEEEEcCCCCE-EEEeC
Confidence 3789999999999999999999999999999 567898864 2 399999999999999999999877755 59999
Q ss_pred CCceEEcCC
Q 002027 102 KKRKLLLHE 110 (978)
Q Consensus 102 ~NR~l~l~~ 110 (978)
+||.+.+|.
T Consensus 74 ~Nr~~~~~~ 82 (92)
T cd05818 74 NNRVLELPK 82 (92)
T ss_pred CCEEEEccC
Confidence 999999987
No 25
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.70 E-value=5.5e-17 Score=152.20 Aligned_cols=83 Identities=29% Similarity=0.600 Sum_probs=74.8
Q ss_pred EEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeC-CCCeEEeecCCC
Q 002027 25 VKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDD-RKNLLRWEMGKK 103 (978)
Q Consensus 25 V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~-~g~~~~WE~g~N 103 (978)
|+|+|+++|.+||+|+|+||+++||+|++.++++|++.+++ +|++++.+|.+..++|||++++. ++..++||.|.|
T Consensus 2 v~F~i~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~---~W~~~v~lp~~~~veYKY~i~~~~~~~~~~WE~g~n 78 (100)
T cd05817 2 VTFKIHYPTQFGEAVYISGNCNQLGNWNPSKAKRMQWNEGD---LWTVDVGIPESVYIEYKYFVSNYDDPNTVLWESGPN 78 (100)
T ss_pred EEEEEEEEcCCCCEEEEEeCcHHHCCCCccccCcccCCCCC---CEEEEEEECCCCcEEEEEEEEecCCCCCeEecCCCC
Confidence 79999999999999999999999999999999999998765 49999999998899999999863 334568999999
Q ss_pred ceEEcCC
Q 002027 104 RKLLLHE 110 (978)
Q Consensus 104 R~l~l~~ 110 (978)
|.+.+..
T Consensus 79 r~~~~~~ 85 (100)
T cd05817 79 RVLRTNH 85 (100)
T ss_pred EEEEeCc
Confidence 9998755
No 26
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.68 E-value=1.5e-16 Score=147.10 Aligned_cols=84 Identities=26% Similarity=0.475 Sum_probs=75.0
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR 246 (978)
+.|+|++++.+ .+||+|+|+||+++||+|++ +++|++. .+.|++++++| .+.+|||||++++.+|.+.||.|+||
T Consensus 2 ~~v~F~~~~~~-~~Gq~l~v~G~~~~LG~W~~--~~~l~~~-~~~W~~~~~l~-~~~~ieyKy~~~~~~~~v~WE~g~Nr 76 (92)
T cd05818 2 VKLQVRLDHQV-KFGEHVAILGSTKELGSWKK--KVPMNWT-ENGWVCDLELD-GGELVEYKFVIVKRDGSVIWEGGNNR 76 (92)
T ss_pred EEEEEEEEEEc-CCCCEEEEEeChHHHCCCCC--CCccccC-CCCEEEEEEeC-CCCcEEEEEEEEcCCCCEEEEeCCCE
Confidence 67999999976 99999999999999999994 5788886 46799999999 45699999999998889999999999
Q ss_pred eEEecCCCC
Q 002027 247 NLNVDFSNN 255 (978)
Q Consensus 247 ~~~~p~~~~ 255 (978)
.+.+|..+.
T Consensus 77 ~~~~~~~~~ 85 (92)
T cd05818 77 VLELPKEGN 85 (92)
T ss_pred EEEccCCCC
Confidence 999997654
No 27
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=99.68 E-value=2.2e-16 Score=147.84 Aligned_cols=95 Identities=34% Similarity=0.601 Sum_probs=79.3
Q ss_pred EEEEEEEEE-CCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCC-ceEEEEEEEEeCCCCeEEeecC
Q 002027 24 TVKFRIPYY-THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIG-FSCEYSYYVVDDRKNLLRWEMG 101 (978)
Q Consensus 24 ~V~F~V~~~-t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~-~~~eYKYvv~d~~g~~~~WE~g 101 (978)
+|+|+|.++ +.+||+|+|+||+++||+|++.++++|++.+++ .|++++.+|.+ ..|+|||++++.++..++||.|
T Consensus 1 ~v~f~v~~~~~~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~---~W~~~v~~p~~~~~ieYKyvi~~~~~~~~~WE~g 77 (99)
T cd05816 1 VVQFKILCPYVPKGQSVYVTGSSPELGNWDPQKALKLSDVGFP---IWEADIDISKDSFPFEYKYIIANKDSGVVSWENG 77 (99)
T ss_pred CEEEEEEcCccCCCCEEEEEEChHHhCCCCccccccCCCCCCC---cEEEEEEeCCCCccEEEEEEEEeCCCCcEEEEcC
Confidence 489999998 899999999999999999999999999987764 49999999987 4899999998755245569999
Q ss_pred CCceEEcCCCCCCC-ceEEEec
Q 002027 102 KKRKLLLHETIKDG-EVVELHD 122 (978)
Q Consensus 102 ~NR~l~l~~~~~~g-~~v~v~D 122 (978)
.||.+.+|.. ... ..+++.|
T Consensus 78 ~nr~~~~p~~-~~~~~~~~~~~ 98 (99)
T cd05816 78 PNRELSAPSL-KGESSTLIVSD 98 (99)
T ss_pred CCeEEECCcc-CCCCceEEEeC
Confidence 9999999873 222 3455554
No 28
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.67 E-value=1.7e-16 Score=148.69 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=76.1
Q ss_pred ceEEEEEEEecccCCCCEEEEecCCcccCCCCcccc-cccc-ccCCCcEEEEEeccCCCCceeeeEEEECCCC-CeeEee
Q 002027 166 SVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNG-LKLS-YAGESVWEADCVIQRGDFPIKYKYCKSGKTG-NISLET 242 (978)
Q Consensus 166 ~~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~a-v~L~-~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g-~v~WE~ 242 (978)
+|.|+|+|+++++.+||.|+|+||+++||+|++.++ +.|. ...++.|++++++| .+.+|||||++++.+| .+.||+
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp-~~~~veyKyv~~~~~~~~~~WE~ 80 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLP-AGRNIEFKAIKKSKDGTNKSWQG 80 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEec-CCCcEEEEEEEEcCCCCeeEEec
Confidence 589999998888899999999999999999999863 4443 35679999999999 5579999999999888 789999
Q ss_pred CCCeeEEecC
Q 002027 243 GANRNLNVDF 252 (978)
Q Consensus 243 g~NR~~~~p~ 252 (978)
|+||.+.+|.
T Consensus 81 g~nr~~~~p~ 90 (99)
T cd05809 81 GQQSWYPVPL 90 (99)
T ss_pred CCCeeEECCC
Confidence 9999999987
No 29
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.67 E-value=2.2e-16 Score=146.16 Aligned_cols=84 Identities=32% Similarity=0.584 Sum_probs=77.3
Q ss_pred EEEEEEecccCCCCEEEEecCCcccCCCCccccccccccC-CCcEEEEEeccC-CCCceeeeEEEECCCCCeeEeeCCCe
Q 002027 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG-ESVWEADCVIQR-GDFPIKYKYCKSGKTGNISLETGANR 246 (978)
Q Consensus 169 V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~-~~~W~~~v~lp~-~~~~~eYKyv~~~~~g~v~WE~g~NR 246 (978)
|+|+|++ .+.+||+|+|+||+++||+|++.+|++|++.+ ++.|++++++|. .+.+|+|||++++.++.+.||.|+||
T Consensus 2 v~f~i~~-~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~W~~~v~~~~~~~~~~~yKy~~~~~~~~~~wE~~~~r 80 (96)
T cd05467 2 VRFQVRC-TTQFGQSVYVVGSHPELGNWDPAKALRLNTSNSYPLWTGEIPLPAPEGQVIEYKYVIVDDDGNVQWESGSNR 80 (96)
T ss_pred EEEEEEE-ECCCCCEEEEEeCcHHhCCcChhcCccccCCCCCCcEEEEEEecCCCCCeEEEEEEEECCCCCEEeccCCCe
Confidence 8999999 45999999999999999999999999999998 999999999994 26799999999998788899999999
Q ss_pred eEEecCC
Q 002027 247 NLNVDFS 253 (978)
Q Consensus 247 ~~~~p~~ 253 (978)
.+.+|..
T Consensus 81 ~~~~~~~ 87 (96)
T cd05467 81 VLTVPST 87 (96)
T ss_pred EEEcCCC
Confidence 9998754
No 30
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.66 E-value=4.2e-16 Score=144.72 Aligned_cols=92 Identities=32% Similarity=0.577 Sum_probs=79.3
Q ss_pred EEEEEEEEEECCCC-CEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecC
Q 002027 23 LTVKFRIPYYTHWG-QSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMG 101 (978)
Q Consensus 23 ~~V~F~V~~~t~~G-q~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE~g 101 (978)
++|+|+|+++|.+| |.|+|+||+++||+|++ +++|++.+++ .|++++.+|.+..|+|||++.+ ++++++||.+
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~---~W~~~v~lp~~~~ieYky~~~~-~~~~~~WE~~ 74 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDG---FWSASVSLPVDTHVEWKFVLVE-NGQVTRWEEC 74 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCC---CEEEEEEecCCCcEEEEEEEEc-CCCEEEeecC
Confidence 47999999997765 88899999999999995 7999877654 5999999999999999999975 6678889999
Q ss_pred CCceEEcCCCCCCCceEEEecccC
Q 002027 102 KKRKLLLHETIKDGEVVELHDLWQ 125 (978)
Q Consensus 102 ~NR~l~l~~~~~~g~~v~v~D~W~ 125 (978)
.||.+... .+.++|.|.|.
T Consensus 75 ~nr~~~~~-----~~~~~v~d~w~ 93 (95)
T cd05813 75 SNRLLETG-----HEDKIVHKWWG 93 (95)
T ss_pred CCeEEEcC-----CceEEEehhcc
Confidence 99998833 34699999996
No 31
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=99.65 E-value=4.7e-16 Score=146.02 Aligned_cols=86 Identities=23% Similarity=0.441 Sum_probs=75.9
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCcccccccccc---CCCcEEEEEeccCCCCceeeeEEEECCCCC-eeEeeC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA---GESVWEADCVIQRGDFPIKYKYCKSGKTGN-ISLETG 243 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~---~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~-v~WE~g 243 (978)
+|+|++.+.+ .+||+|+|+||+++||+|++++|++|++. .++.|++++++|. +.+|||||++++.++. +.||.|
T Consensus 1 ~l~f~i~~~t-~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~-~~~veYky~v~~~~~~~~~wE~g 78 (101)
T cd05815 1 TLSFKLPYYT-QWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPP-GFSSEYNYYVVDDRKSVLRSESG 78 (101)
T ss_pred CEEEEEEEEc-cCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCC-CCcEEEEEEEEcCCCcEEEeecC
Confidence 3899999987 99999999999999999999999999764 4458999999995 6789999999887776 579999
Q ss_pred CCeeEEecCCCC
Q 002027 244 ANRNLNVDFSNN 255 (978)
Q Consensus 244 ~NR~~~~p~~~~ 255 (978)
+||.+.+|..+.
T Consensus 79 ~nr~~~~~~~~~ 90 (101)
T cd05815 79 EKRKLVLPEGLQ 90 (101)
T ss_pred CCEeEECCcccc
Confidence 999999987543
No 32
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.64 E-value=4.8e-16 Score=145.84 Aligned_cols=82 Identities=29% Similarity=0.568 Sum_probs=75.1
Q ss_pred EEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCC--CCeeEeeCCCe
Q 002027 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKT--GNISLETGANR 246 (978)
Q Consensus 169 V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~--g~v~WE~g~NR 246 (978)
|+|+|++++ .+||+|+|+||+++||+|++++|++|++.+++.|++++++| .+.+|||||++++.+ +.+.||.|.||
T Consensus 2 v~F~i~~~t-~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~~~~~W~~~v~lp-~~~~veYKY~i~~~~~~~~~~WE~g~nr 79 (100)
T cd05817 2 VTFKIHYPT-QFGEAVYISGNCNQLGNWNPSKAKRMQWNEGDLWTVDVGIP-ESVYIEYKYFVSNYDDPNTVLWESGPNR 79 (100)
T ss_pred EEEEEEEEc-CCCCEEEEEeCcHHHCCCCccccCcccCCCCCCEEEEEEEC-CCCcEEEEEEEEecCCCCCeEecCCCCE
Confidence 899999984 99999999999999999999999999999999999999999 477899999998643 67899999999
Q ss_pred eEEecC
Q 002027 247 NLNVDF 252 (978)
Q Consensus 247 ~~~~p~ 252 (978)
.+.+-.
T Consensus 80 ~~~~~~ 85 (100)
T cd05817 80 VLRTNH 85 (100)
T ss_pred EEEeCc
Confidence 998743
No 33
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=99.64 E-value=7.7e-16 Score=145.25 Aligned_cols=96 Identities=23% Similarity=0.334 Sum_probs=79.6
Q ss_pred eEEEEEEEEEE--CCCCCEEEEEeccCCcCCCCCCC--ce-eccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeE
Q 002027 22 SLTVKFRIPYY--THWGQSLLVCGSEPVLGSWDVKK--GF-LLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLL 96 (978)
Q Consensus 22 ~~~V~F~V~~~--t~~Gq~L~VvGs~~~LG~W~~~~--av-~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~ 96 (978)
++.|+|.|+.. |.+||+|+|+||+++||+|++.. ++ +|++... +.|++++++|.+..|||||++++.+|.+.
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~---~~W~~~~~lp~~~~veyK~v~~~~~g~v~ 78 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLCPNW---PDWFVVASVPAGTYIEFKFLKAPADGTGT 78 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhccccccccccCCC---CCEEEEEEcCCCCcEEEEEEEECCCCCEE
Confidence 48899999854 89999999999999999999965 44 7876554 45999999999999999999998777664
Q ss_pred EeecCCCceEEcCCCCCCCceEEEecccC
Q 002027 97 RWEMGKKRKLLLHETIKDGEVVELHDLWQ 125 (978)
Q Consensus 97 ~WE~g~NR~l~l~~~~~~g~~v~v~D~W~ 125 (978)
||.|.||.+.+|.. . ...+..+|+
T Consensus 79 -WE~g~Nr~~~~p~~-~---~~~~~~~w~ 102 (103)
T cd05820 79 -WEGGSNHAYTTPSG-G---TGTVTVTWQ 102 (103)
T ss_pred -EEeCCCEeEECCCC-C---cEEEEEEec
Confidence 99999999999872 2 235666775
No 34
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=99.63 E-value=1e-15 Score=142.88 Aligned_cols=86 Identities=28% Similarity=0.526 Sum_probs=75.6
Q ss_pred EEEEEEEE-EECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCC--CeEEee
Q 002027 23 LTVKFRIP-YYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRK--NLLRWE 99 (978)
Q Consensus 23 ~~V~F~V~-~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g--~~~~WE 99 (978)
+.|+|.+. +.|.+||+|+|+||+++||+|++.+|++|++... +.|+++|.+|.+..|||||++++.++ ..+.||
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~~~---~~W~~~v~lp~~~~veyKyv~~~~~~~~~~v~WE 77 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPTAY---PTWSGSISLPASTNVEWKCLKRNETNPTAGVQWQ 77 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCCCC---CeEEEEEEcCCCCeEEEEEEEEcCCCCcceEEEe
Confidence 46899976 6699999999999999999999999999988654 55999999999999999999987554 245699
Q ss_pred cCCCceEEcCCC
Q 002027 100 MGKKRKLLLHET 111 (978)
Q Consensus 100 ~g~NR~l~l~~~ 111 (978)
.|+||.+.+|..
T Consensus 78 ~g~Nr~~~~p~~ 89 (97)
T cd05810 78 GGGNNQLTTGNS 89 (97)
T ss_pred eCCCEEEeCCCC
Confidence 999999999873
No 35
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=99.62 E-value=2.2e-15 Score=141.14 Aligned_cols=96 Identities=20% Similarity=0.371 Sum_probs=76.6
Q ss_pred eEEEEEEEEE-ECCCCCEEEEEeccCCcCCCCCCCc-eeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEee
Q 002027 22 SLTVKFRIPY-YTHWGQSLLVCGSEPVLGSWDVKKG-FLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99 (978)
Q Consensus 22 ~~~V~F~V~~-~t~~Gq~L~VvGs~~~LG~W~~~~a-v~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE 99 (978)
++.|+|+|+. .|.+||.|+|+||+++||+|++.++ +.|... ..++.|++++++|.+..|||||++++.+|..+.||
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~--~~~~~W~~~~~lp~~~~veyKyv~~~~~~~~~~WE 79 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYN--SHSNDWRGTVHLPAGRNIEFKAIKKSKDGTNKSWQ 79 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccC--CCCCCEEEEEEecCCCcEEEEEEEEcCCCCeeEEe
Confidence 5899999964 5999999999999999999998852 444321 12355999999999999999999998777455699
Q ss_pred cCCCceEEcCCCCCCCceEEEeccc
Q 002027 100 MGKKRKLLLHETIKDGEVVELHDLW 124 (978)
Q Consensus 100 ~g~NR~l~l~~~~~~g~~v~v~D~W 124 (978)
.|.||.+.+|.+ ..++.+.|
T Consensus 80 ~g~nr~~~~p~~-----~~~~~~~~ 99 (99)
T cd05809 80 GGQQSWYPVPLG-----TTSYTSSW 99 (99)
T ss_pred cCCCeeEECCCC-----ccEEEeeC
Confidence 999999999872 23555555
No 36
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.57 E-value=7.8e-15 Score=139.77 Aligned_cols=85 Identities=25% Similarity=0.442 Sum_probs=73.0
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCcccccccccc-------CCCcEEEEEeccCC--CCceeeeEEEECCCCC
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA-------GESVWEADCVIQRG--DFPIKYKYCKSGKTGN 237 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~-------~~~~W~~~v~lp~~--~~~~eYKyv~~~~~g~ 237 (978)
+.|||+|.++-+++||+|+|+||+++||+|++++|++|++. ..+.|++++++|.. +.+|||||++.+ +|.
T Consensus 1 ~~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~-~~~ 79 (112)
T cd05806 1 MLFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE-AGA 79 (112)
T ss_pred CEEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC-CCe
Confidence 36999999866699999999999999999999999999986 44689999999954 368999999988 678
Q ss_pred eeEe---eCCCeeEEecC
Q 002027 238 ISLE---TGANRNLNVDF 252 (978)
Q Consensus 238 v~WE---~g~NR~~~~p~ 252 (978)
+.|| ...||.+....
T Consensus 80 v~WE~~~~~~nr~~~~~~ 97 (112)
T cd05806 80 LIWEGNGPHHDRCCVYDS 97 (112)
T ss_pred eEEecCCCCCCeEEeccc
Confidence 9999 55799877653
No 37
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.57 E-value=8.8e-15 Score=135.89 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=71.4
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR 246 (978)
|+|+|+|+++++.+||.++|+||+++||+|++ +++|+...++.|++++++|. +.+|||||++.++++.+.||.|.||
T Consensus 1 v~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~--~~~l~~~~~~~W~~~v~lp~-~~~ieYky~~~~~~~~~~WE~~~nr 77 (95)
T cd05813 1 VNVTFRVHYITHSDAQLVAVTGDHEELGSWHS--YIPLQYVKDGFWSASVSLPV-DTHVEWKFVLVENGQVTRWEECSNR 77 (95)
T ss_pred CeEEEEEEeeeCCCCeEEEEEcChHHHCCCCc--cccCcCCCCCCEEEEEEecC-CCcEEEEEEEEcCCCEEEeecCCCe
Confidence 57999999999777899999999999999996 78999988999999999995 5589999999875545699999999
Q ss_pred eEE
Q 002027 247 NLN 249 (978)
Q Consensus 247 ~~~ 249 (978)
.+.
T Consensus 78 ~~~ 80 (95)
T cd05813 78 LLE 80 (95)
T ss_pred EEE
Confidence 988
No 38
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=99.51 E-value=1.2e-13 Score=131.77 Aligned_cols=86 Identities=23% Similarity=0.508 Sum_probs=71.4
Q ss_pred EEEEEEEEE-ECCCCCEEEEEeccCCcCCCCCCCceeccccCC----CCCccEEEEEEcCCC---ceEEEEEEEEeCCCC
Q 002027 23 LTVKFRIPY-YTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQ----DDELIWSGSIAVPIG---FSCEYSYYVVDDRKN 94 (978)
Q Consensus 23 ~~V~F~V~~-~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~----~~~~~W~~~V~lp~~---~~~eYKYvv~d~~g~ 94 (978)
|+|||+|.+ .+++||+|+|+||+++||+|++.+|++|++... +..+.|++++++|.+ ..|||||++++ +|
T Consensus 1 ~~~~f~~~~~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~~~-~~- 78 (112)
T cd05806 1 MLFRFGVVLTFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLKRE-AG- 78 (112)
T ss_pred CEEEEEEEEeecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEEeC-CC-
Confidence 589999998 599999999999999999999999999998632 133569999999985 58999999976 55
Q ss_pred eEEeecC---CCceEEcCC
Q 002027 95 LLRWEMG---KKRKLLLHE 110 (978)
Q Consensus 95 ~~~WE~g---~NR~l~l~~ 110 (978)
.+.||.+ .||.+.+..
T Consensus 79 ~v~WE~~~~~~nr~~~~~~ 97 (112)
T cd05806 79 ALIWEGNGPHHDRCCVYDS 97 (112)
T ss_pred eeEEecCCCCCCeEEeccc
Confidence 4559944 489877654
No 39
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.48 E-value=9e-14 Score=134.75 Aligned_cols=86 Identities=31% Similarity=0.543 Sum_probs=71.5
Q ss_pred EEEEEEEEE-ECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeC----C-CCeE
Q 002027 23 LTVKFRIPY-YTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDD----R-KNLL 96 (978)
Q Consensus 23 ~~V~F~V~~-~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~----~-g~~~ 96 (978)
+.|+|+|++ .|.+||+|+|+||+++||+|++.+|++|++.+ ...+.|+++|.+|.+..|+|||+++.. . .+++
T Consensus 1 ~~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~-~~~~~W~~~v~lp~~~~veYkY~~~~~~~~~~~~~~~ 79 (120)
T cd05814 1 CRVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKED-DDCNLWKASIELPRGVDFQYRYFVAVVLNDSGPCQVI 79 (120)
T ss_pred CeEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCC-CcCCccEEEEEECCCCeEEEEEEEEEeccCCCCccEE
Confidence 469999999 59999999999999999999999999999872 112459999999999899999999752 2 2455
Q ss_pred --EeecCCC-ceEEcC
Q 002027 97 --RWEMGKK-RKLLLH 109 (978)
Q Consensus 97 --~WE~g~N-R~l~l~ 109 (978)
+||.+.| |.+...
T Consensus 80 ~~~WE~~~~~R~~~~~ 95 (120)
T cd05814 80 VRKWETHLQPRSIKPL 95 (120)
T ss_pred EeeccCCCCccEeccc
Confidence 8999986 666543
No 40
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=99.43 E-value=2.4e-13 Score=131.74 Aligned_cols=82 Identities=22% Similarity=0.423 Sum_probs=70.8
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCcccccccccc--CCCcEEEEEeccCCCCceeeeEEEECC----CC--Ce-
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA--GESVWEADCVIQRGDFPIKYKYCKSGK----TG--NI- 238 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~--~~~~W~~~v~lp~~~~~~eYKyv~~~~----~g--~v- 238 (978)
.|+|+|+++++.+||+|+|+||+++||+|++.+|++|++. .++.|++++.+| .+.+|+|||++++. ++ .+
T Consensus 2 ~v~F~v~~~~~~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp-~~~~veYkY~~~~~~~~~~~~~~~~ 80 (120)
T cd05814 2 RVTFRVFASELAPGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELP-RGVDFQYRYFVAVVLNDSGPCQVIV 80 (120)
T ss_pred eEEEEEeeccCCCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEEC-CCCeEEEEEEEEEeccCCCCccEEE
Confidence 5899999977799999999999999999999999999987 789999999999 45689999999762 22 24
Q ss_pred -eEeeCCC-eeEEe
Q 002027 239 -SLETGAN-RNLNV 250 (978)
Q Consensus 239 -~WE~g~N-R~~~~ 250 (978)
.||.+.| |.+.+
T Consensus 81 ~~WE~~~~~R~~~~ 94 (120)
T cd05814 81 RKWETHLQPRSIKP 94 (120)
T ss_pred eeccCCCCccEecc
Confidence 8999987 66654
No 41
>PLN02950 4-alpha-glucanotransferase
Probab=99.36 E-value=2.2e-12 Score=160.85 Aligned_cols=89 Identities=28% Similarity=0.483 Sum_probs=80.5
Q ss_pred CCCceEEEEEEEEEE-CCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCC-ceEEEEEEEEeCCCCe
Q 002027 18 MSVKSLTVKFRIPYY-THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIG-FSCEYSYYVVDDRKNL 95 (978)
Q Consensus 18 ~~p~~~~V~F~V~~~-t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~-~~~eYKYvv~d~~g~~ 95 (978)
.++.+++|+|+|+++ |.+||+|+|+||+++||+|++.+|+.|++.+.+. |++++++|.+ .+|||||++++++|.+
T Consensus 148 ~~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~~~~p~---W~~~v~lp~~~~~~EYKyv~~~~~g~v 224 (909)
T PLN02950 148 PAPDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNYTGDSI---WEADCLVPKSDFPIKYKYALQTAEGLV 224 (909)
T ss_pred CCCCceeEEEEEecCccCCCCeEEEEechhhcCCCCcccccccccCCCCc---EEEEEEecCCCceEEEEEEEEcCCCce
Confidence 356779999999998 8999999999999999999999999999877644 9999999987 5899999999877766
Q ss_pred EEeecCCCceEEcCC
Q 002027 96 LRWEMGKKRKLLLHE 110 (978)
Q Consensus 96 ~~WE~g~NR~l~l~~ 110 (978)
+ ||.|.||.+.+|.
T Consensus 225 ~-WE~g~NR~~~~p~ 238 (909)
T PLN02950 225 S-LELGVNRELSLDS 238 (909)
T ss_pred E-EeeCCCceeecCc
Confidence 5 9999999999997
No 42
>PRK05402 glycogen branching enzyme; Provisional
Probab=98.08 E-value=0.00061 Score=85.23 Aligned_cols=271 Identities=17% Similarity=0.149 Sum_probs=148.9
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEeecCCC
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWEMGKK 103 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE~g~N 103 (978)
-++|+|=++. =++|.|+|+-. + .+..+|...+. ..+|++-|. ....-.|||.|.+ +|+.+ .-..+.
T Consensus 29 g~~f~vwaP~--A~~V~vvgdfn-----~-~~~~~m~~~~~--~G~w~~~ip--~~~g~~YKy~i~~-~g~~~-~k~DPy 94 (726)
T PRK05402 29 GLVVRALLPG--AEEVWVILPGG-----G-RKLAELERLHP--RGLFAGVLP--RKGPFDYRLRVTW-GGGEQ-LIDDPY 94 (726)
T ss_pred cEEEEEECCC--CeEEEEEeecC-----C-CccccceEcCC--CceEEEEec--CCCCCCeEEEEEe-CCcee-Eecccc
Confidence 6788887552 25899999754 1 45668885432 256998877 3344569999987 67543 111110
Q ss_pred ce-EEcCCCCCCCceEEEecccCccccCCCCcccchhhhccccccccccccccccccccCCCCceEEEEEEEecccCCCC
Q 002027 104 RK-LLLHETIKDGEVVELHDLWQTGGDALPFRSAFKNVIFRRSFSLDIERSDGLIQNKLEQEDSVLVRFKICIPNIEEDA 182 (978)
Q Consensus 104 R~-l~l~~~~~~g~~v~v~D~W~~~~~~~~~ss~F~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~v~~~~~~~Gq 182 (978)
.. ..++. .....|.+-.. -...+.+|+-+... .+...|+|+|-+|. -+
T Consensus 95 af~~~~~~----------------~~~~~~~~g~~----------~~~~~~LGah~~~~--~~~~gv~FrvwAP~---A~ 143 (726)
T PRK05402 95 RFGPLLGE----------------LDLYLFGEGTH----------LRLYETLGAHPVTV--DGVSGVRFAVWAPN---AR 143 (726)
T ss_pred ccCCCCCH----------------HHHHHHhCCcc----------chhhhccccEEecc--CCCCcEEEEEECCC---CC
Confidence 00 00110 00000000000 00112233211000 11235999999987 89
Q ss_pred EEEEecCCcccCCCCcccccccccc-CCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCeeEE
Q 002027 183 SVYVIGSTSMLGQWKLQNGLKLSYA-GESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIF 261 (978)
Q Consensus 183 ~v~IvGs~~eLG~W~~~~av~L~~~-~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~~~~~~ 261 (978)
+|.|+|+- .+|+.. ..+|... ....|++.|.-... .-.|||.+...+|.+..-..+=. ..++......+ ++
T Consensus 144 ~V~l~gdf---n~w~~~-~~~m~~~~~~Gvw~~~i~~~~~--g~~Y~y~v~~~~g~~~~~~DPYa-~~~~~~~~~~s-~v 215 (726)
T PRK05402 144 RVSVVGDF---NGWDGR-RHPMRLRGESGVWELFIPGLGE--GELYKFEILTADGELLLKADPYA-FAAEVRPATAS-IV 215 (726)
T ss_pred EEEEEEEc---CCCCCc-cccceEcCCCCEEEEEeCCCCC--CCEEEEEEeCCCCcEeecCCCce-EEEecCCCCcE-EE
Confidence 99999843 467643 3578776 67899988752212 34899999876565433333322 22221111122 22
Q ss_pred eccccc--cCCC---------ccc---eEEeeecCccCCC-CCCcccCHHH-HHHHHHHHHHcCCCEEEEcCCCCCCCCC
Q 002027 262 LSDGMM--REMP---------WRG---AGVAVPMFSVRSE-ADLGVGEFLD-LKLLVDWAVESGFHLVQLLPINDTSVNR 325 (978)
Q Consensus 262 ~~~~~~--~~~~---------~R~---~Gv~~~l~SLrs~-~~~GIGdf~d-l~~~~d~~~~~G~~~~QilPl~~t~~~~ 325 (978)
.....+ .... .+. .--=+|+-+.-.. ..-++|+|.+ +.+++|.+++.|.+.|+|+||......
T Consensus 216 ~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~- 294 (726)
T PRK05402 216 ADLSQYQWNDAAWMEKRAKRNPLDAPISIYEVHLGSWRRHEDGGRFLSYRELADQLIPYVKEMGFTHVELLPIAEHPFD- 294 (726)
T ss_pred eCCccCCCCCcchhhcccccCcccCCcEEEEEehhhhccCCCCCcccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCC-
Confidence 221111 0000 111 1223555555432 2335899987 446679999999999999999753211
Q ss_pred CCCCCCCCCccCccccCccccChhhh
Q 002027 326 MWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 326 ~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
.+--|.+..=|+.+|-|-.++++
T Consensus 295 ---~~~GY~~~~y~ai~~~~Gt~~df 317 (726)
T PRK05402 295 ---GSWGYQPTGYYAPTSRFGTPDDF 317 (726)
T ss_pred ---CCCCCCcccCCCcCcccCCHHHH
Confidence 12369999999999999887765
No 43
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.72 E-value=0.0036 Score=81.30 Aligned_cols=137 Identities=21% Similarity=0.206 Sum_probs=80.4
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccc-cCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCC-
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSY-AGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGA- 244 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~-~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~- 244 (978)
..|+|.|-+|. -++|.|+|+- -+|+... .+|.. .....|++.|.= ...--.|||.+...+|.+..-..+
T Consensus 638 ~Gv~F~VWAP~---A~~V~vvgdF---N~w~~~~-~~m~~~~~~GvW~~fipg--~~~G~~Yky~i~~~~g~~~~k~DPy 708 (1224)
T PRK14705 638 DGVSFAVWAPN---AQAVRVKGDF---NGWDGRE-HSMRSLGSSGVWELFIPG--VVAGACYKFEILTKAGQWVEKADPL 708 (1224)
T ss_pred CeEEEEEECCC---CCEEEEEEEe---cCCCCCc-ccceECCCCCEEEEEECC--CCCCCEEEEEEEcCCCcEEecCCcc
Confidence 46999999998 7999999975 3788643 46765 456899987752 222358999998866654322222
Q ss_pred CeeEEecCCCCCCeeEEeccc-------cccCC---Cccc---eEEeeecCccCCCCCCcccCHHH-HHHHHHHHHHcCC
Q 002027 245 NRNLNVDFSNNQPRYIFLSDG-------MMREM---PWRG---AGVAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGF 310 (978)
Q Consensus 245 NR~~~~p~~~~~~~~~~~~~~-------~~~~~---~~R~---~Gv~~~l~SLrs~~~~GIGdf~d-l~~~~d~~~~~G~ 310 (978)
-+....+... .+ ++.... +.... ..+. .=-=+||-|... + |.|.+ +.+++|++++.|.
T Consensus 709 A~~~e~~p~~--aS-~V~d~~~~w~d~~W~~~r~~~~~~~~p~~IYEvHvgsf~~----~-~~~~~l~~~lldYlk~LGv 780 (1224)
T PRK14705 709 AFGTEVPPLT--AS-RVVEASYAFKDAEWMSARAERDPHNSPMSVYEVHLGSWRL----G-LGYRELAKELVDYVKWLGF 780 (1224)
T ss_pred ccccccCCCC--Ce-EEeCCCCCcCChhhhhccccCCCCcCCcEEEEEEeccccc----C-CchHHHHHHHHHHHHHhCC
Confidence 1112222111 12 222211 11100 0011 112245555433 2 46776 4578999999999
Q ss_pred CEEEEcCCCC
Q 002027 311 HLVQLLPIND 320 (978)
Q Consensus 311 ~~~QilPl~~ 320 (978)
+.|+|+||..
T Consensus 781 t~IeLmPv~e 790 (1224)
T PRK14705 781 THVEFMPVAE 790 (1224)
T ss_pred CEEEECcccc
Confidence 9999999964
No 44
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.22 E-value=0.01 Score=73.35 Aligned_cols=170 Identities=19% Similarity=0.261 Sum_probs=103.4
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR 246 (978)
..|+|+|-+|. -++|.|+|+- .+|++. ..+|.......|++.+.-... .-.|||.+...+|....-..+ .
T Consensus 38 ~gv~Frv~AP~---A~~V~v~gdf---n~w~~~-~~~m~~~~~Gvw~~~i~~~~~--g~~Y~y~v~~~~g~~~~~~DP-y 107 (633)
T PRK12313 38 KGTYFRVWAPN---AQAVSVVGDF---NDWRGN-AHPLVRRESGVWEGFIPGAKE--GQLYKYHISRQDGYQVEKIDP-F 107 (633)
T ss_pred ccEEEEEECCC---CCEEEEEEec---CCCCcc-cccccccCCCEEEEEeCCCCC--CCEEEEEEECCCCeEEecCCC-c
Confidence 46999999987 8899999853 578754 367877778899998873212 459999996555543222222 1
Q ss_pred eEEecCCCCCCeeEEecccccc--CCCc----------cceEE--eeecCccCCCCCCcccCHHHHH-HHHHHHHHcCCC
Q 002027 247 NLNVDFSNNQPRYIFLSDGMMR--EMPW----------RGAGV--AVPMFSVRSEADLGVGEFLDLK-LLVDWAVESGFH 311 (978)
Q Consensus 247 ~~~~p~~~~~~~~~~~~~~~~~--~~~~----------R~~Gv--~~~l~SLrs~~~~GIGdf~dl~-~~~d~~~~~G~~ 311 (978)
...++......+ ++.....+. ...| +.--| =+|+-|.-...+-|.|+|.++. +++|.+++.|.+
T Consensus 108 a~~~~~~~~~~s-~v~d~~~~~w~~~~~~~~~~~~~~~~~~~~iYe~hv~~f~~~~~~~~g~~~~~~~~ll~yl~~LGv~ 186 (633)
T PRK12313 108 AFYFEARPGTAS-IVWDLPEYKWKDGLWLARRKRWNALDRPISIYEVHLGSWKRNEDGRPLSYRELADELIPYVKEMGYT 186 (633)
T ss_pred eEEEecCCCCce-EECCCcccCCCChhhhhccccCCCCCCCceEEEEehhccccCCCCCccCHHHHHHHHHHHHHHcCCC
Confidence 222211111122 222211111 1001 01112 2444554333334689998844 678999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 312 LVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 312 ~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
.|+|+||...-.. .+-.|.+..=|+.+|-|-.++++
T Consensus 187 ~i~L~Pi~~~~~~----~~~GY~~~~y~~i~~~~Gt~~d~ 222 (633)
T PRK12313 187 HVEFMPLMEHPLD----GSWGYQLTGYFAPTSRYGTPEDF 222 (633)
T ss_pred EEEeCchhcCCCC----CCCCCCCcCcCcCCCCCCCHHHH
Confidence 9999999653211 12378888889999999887665
No 45
>PRK12568 glycogen branching enzyme; Provisional
Probab=96.99 E-value=0.024 Score=70.49 Aligned_cols=169 Identities=20% Similarity=0.279 Sum_probs=102.1
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCC-C
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGA-N 245 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~-N 245 (978)
..|+|.|-+|. -++|.|+|+- -+|+.. ..+|.......|++.|.=- ..--.|||.+...+|.+..-.++ -
T Consensus 138 ~Gv~FaVWAPn---A~~VsVvGDF---N~Wdg~-~~pM~~~~~GVWelfipg~--~~G~~YKYeI~~~~G~~~~k~DPYA 208 (730)
T PRK12568 138 PGVRFAVWAPH---AQRVAVVGDF---NGWDVR-RHPMRQRIGGFWELFLPRV--EAGARYKYAITAADGRVLLKADPVA 208 (730)
T ss_pred CcEEEEEECCC---CCEEEEEEec---CCCCcc-ceecccCCCCEEEEEECCC--CCCCEEEEEEEcCCCeEeecCCCcc
Confidence 35999999997 8999999975 478754 4678766788999887522 22358999998766654322222 2
Q ss_pred eeEEecCCCCCCeeEEec-c-------ccccC--CCcc---ceEEeeecCccCCCCCCcccCHHHH-HHHHHHHHHcCCC
Q 002027 246 RNLNVDFSNNQPRYIFLS-D-------GMMRE--MPWR---GAGVAVPMFSVRSEADLGVGEFLDL-KLLVDWAVESGFH 311 (978)
Q Consensus 246 R~~~~p~~~~~~~~~~~~-~-------~~~~~--~~~R---~~Gv~~~l~SLrs~~~~GIGdf~dl-~~~~d~~~~~G~~ 311 (978)
|....+... .+ ++.. + .+... +..+ ..===|||-|.+...+-+.++|..+ .++++.+++.|.+
T Consensus 209 ~~~e~~p~~--as-vV~~~~~~~W~d~~W~~~r~~~~~~~~~~IYEvHvgsf~~~~~~~~~~~~~la~~ll~ylk~LGvt 285 (730)
T PRK12568 209 RQTELPPAT--AS-VVPSAAAFAWTDAAWMARRDPAAVPAPLSIYEVHAASWRRDGHNQPLDWPTLAEQLIPYVQQLGFT 285 (730)
T ss_pred eEeecCCCC--Ce-EEcCCCCCCCCChhhhhcccccCCCCCcEEEEEEhHHhcCCCCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 222222111 11 1111 1 11100 0000 1112256777765444457799874 5678999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 312 LVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 312 ~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
.|+|+|+....... +-=|++..-|+.+|-|=.++++
T Consensus 286 ~I~LmPi~e~~~~~----~wGY~~~~~~a~~~~~G~~~df 321 (730)
T PRK12568 286 HIELLPITEHPFGG----SWGYQPLGLYAPTARHGSPDGF 321 (730)
T ss_pred EEEECccccCCCCC----CCCCCCCcCCccCcccCCHHHH
Confidence 99999996532111 1246667777777777666544
No 46
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=96.76 E-value=0.022 Score=69.42 Aligned_cols=158 Identities=19% Similarity=0.337 Sum_probs=96.5
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccc-cCCCcEEEEEe-ccCCCCceeeeEEEECCCCCeeEeeCC
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSY-AGESVWEADCV-IQRGDFPIKYKYCKSGKTGNISLETGA 244 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~-~~~~~W~~~v~-lp~~~~~~eYKyv~~~~~g~v~WE~g~ 244 (978)
..|+|+|=+|. -++|.|+|+-. +|+.-. .+|.. .+...|++.|. ++ .+ -.|||.+.+.+|.+.+-..+
T Consensus 36 ~~~~F~vWAP~---a~~V~vvgdfn---~w~~~~-~~~~~~~~~G~we~~vp~~~-~G--~~Yky~l~~~~g~~~~~~DP 105 (628)
T COG0296 36 SGVRFRVWAPN---ARRVSLVGDFN---DWDGRR-MPMRDRKESGIWELFVPGAP-PG--TRYKYELIDPSGQLRLKADP 105 (628)
T ss_pred CceEEEEECCC---CCeEEEEeecC---Ccccee-cccccCCCCceEEEeccCCC-CC--CeEEEEEeCCCCceeeccCc
Confidence 45999999987 78899999865 455321 12221 25589999998 66 44 49999999988866665554
Q ss_pred -CeeEEecCCCCCCeeEEecc-cc-cc----CCCc---cceEEe---eecCccCCCCCCcccCHHHHHHHHHHHHHcCCC
Q 002027 245 -NRNLNVDFSNNQPRYIFLSD-GM-MR----EMPW---RGAGVA---VPMFSVRSEADLGVGEFLDLKLLVDWAVESGFH 311 (978)
Q Consensus 245 -NR~~~~p~~~~~~~~~~~~~-~~-~~----~~~~---R~~Gv~---~~l~SLrs~~~~GIGdf~dl~~~~d~~~~~G~~ 311 (978)
-|....++... +.+ ... .+ -. ...| +...+. |||-|-+.. ..-|.|.-+.++++.++++|.+
T Consensus 106 ~a~~~~~~p~~a--S~v-~~~~~y~W~d~~~~~~~~~~~~e~~vIYElHvGs~~~~--~~~~~~e~a~~llpYl~elG~T 180 (628)
T COG0296 106 YARRQEVGPHTA--SQV-VDLPDYEWQDERWDRAWRGRFWEPIVIYELHVGSFTPD--RFLGYFELAIELLPYLKELGIT 180 (628)
T ss_pred hhhccCCCCCCc--cee-cCCCCcccccccccccccCCCCCCceEEEEEeeeccCC--CCcCHHHHHHHHhHHHHHhCCC
Confidence 33333332222 211 111 11 00 0111 112222 566666652 4577888899999999999999
Q ss_pred EEEEcCCCCCCCCCCCC--CCCCCCccCcc
Q 002027 312 LVQLLPINDTSVNRMWW--DSYPYSSLSVF 339 (978)
Q Consensus 312 ~~QilPl~~t~~~~~~~--d~SPYs~~S~f 339 (978)
.|+|+||..--....|. .-.+|+|.|+|
T Consensus 181 ~IELMPv~e~p~~~sWGYq~~g~yAp~sry 210 (628)
T COG0296 181 HIELMPVAEHPGDRSWGYQGTGYYAPTSRY 210 (628)
T ss_pred EEEEcccccCCCCCCCCCCcceeccccccC
Confidence 99999998643222221 12356665543
No 47
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=96.72 E-value=0.043 Score=68.49 Aligned_cols=171 Identities=15% Similarity=0.131 Sum_probs=100.6
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEec----cCCCCceeeeEEEECCCCCeeEeeC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVI----QRGDFPIKYKYCKSGKTGNISLETG 243 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~l----p~~~~~~eYKyv~~~~~g~v~WE~g 243 (978)
.++|+|-+|. -++|+|+|+-. +|+.. +.+|...+...|++.|.- ++..---.|||.+...+|....-..
T Consensus 115 g~~FrvWAP~---A~~V~LvGdFN---~W~~~-~~~M~~~~~GvWe~~ip~~~g~~~~~~G~~Yky~i~~~~g~~~~r~d 187 (758)
T PLN02447 115 GITYREWAPG---AKAAALIGDFN---NWNPN-AHWMTKNEFGVWEIFLPDADGSPAIPHGSRVKIRMETPDGRWVDRIP 187 (758)
T ss_pred CEEEEEECCC---CCEEEEEEecC---CCCCC-ccCceeCCCCEEEEEECCccccccCCCCCEEEEEEEeCCCcEEeecC
Confidence 5899999987 68999999764 89754 357888888999998863 0011234899999887664332122
Q ss_pred C--CeeEEecCCC-CCCeeEEeccc----c--ccCCCccceEEe---eecCccCCCCCCcccCHHH-HHHHHHHHHHcCC
Q 002027 244 A--NRNLNVDFSN-NQPRYIFLSDG----M--MREMPWRGAGVA---VPMFSVRSEADLGVGEFLD-LKLLVDWAVESGF 310 (978)
Q Consensus 244 ~--NR~~~~p~~~-~~~~~~~~~~~----~--~~~~~~R~~Gv~---~~l~SLrs~~~~GIGdf~d-l~~~~d~~~~~G~ 310 (978)
+ -++...|.+. ....-++.... + ......+...+. +|+-+-... -++|.|.+ +.+.++.+++.|.
T Consensus 188 pya~~~~~~p~~~~~~~~svv~dp~~~~~y~w~~~~~~~~~~~~IYE~Hvg~~~~~--~~~gty~~~~~~~L~ylk~LG~ 265 (758)
T PLN02447 188 AWIKYAVQAPGEIGAPYNGVYWDPPEEEKYVFKHPRPPRPAALRIYEAHVGMSSEE--PKVNSYREFADDVLPRIKALGY 265 (758)
T ss_pred chHheeeccCCccCCCCceEEeCCCCCCCCCCCCCCCCCCCCCEEEEEeCCcccCC--CCCCCHHHHHHHHHHHHHHcCC
Confidence 1 1122222210 00111222210 1 111111111221 233222111 14889987 4678999999999
Q ss_pred CEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 311 HLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 311 ~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
+.|||+||..-.... +--|.+..-|+.+|-|-++++|
T Consensus 266 t~I~LmPi~e~~~~~----~wGY~~~~~fa~~~~~Gtp~dl 302 (758)
T PLN02447 266 NAVQLMAIQEHAYYG----SFGYHVTNFFAVSSRSGTPEDL 302 (758)
T ss_pred CEEEECCccccCCCC----CCCcCcccCcccccccCCHHHH
Confidence 999999998754222 2358888888888877665543
No 48
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.62 E-value=0.057 Score=66.79 Aligned_cols=168 Identities=19% Similarity=0.268 Sum_probs=99.6
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCC-Ce
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGA-NR 246 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~-NR 246 (978)
.|+|+|-+|. -++|.|+|+-. +|+. ...+|.......|++.|.-...+ -.|||.+...+|....-..+ -|
T Consensus 39 Gv~FrvwAP~---A~~V~Lvgdfn---~w~~-~~~pM~~~~~GvW~~~vpg~~~g--~~Yky~I~~~~g~~~~~~DPYa~ 109 (639)
T PRK14706 39 GVRFAVWAPG---AQHVSVVGDFN---DWNG-FDHPMQRLDFGFWGAFVPGARPG--QRYKFRVTGAAGQTVDKMDPYGS 109 (639)
T ss_pred cEEEEEECCC---CCEEEEEEecC---Cccc-ccccccccCCCEEEEEECCCCCC--CEEEEEEECCCCCEEeccCcceE
Confidence 5899999987 78999998643 6864 34678777778999887532122 48999998765543222222 22
Q ss_pred eEEecCCCCCCeeEEecccc-ccCCCc---cce---E-E---eeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCCEEE
Q 002027 247 NLNVDFSNNQPRYIFLSDGM-MREMPW---RGA---G-V---AVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFHLVQ 314 (978)
Q Consensus 247 ~~~~p~~~~~~~~~~~~~~~-~~~~~~---R~~---G-v---~~~l~SLrs~~~~GIGdf~d-l~~~~d~~~~~G~~~~Q 314 (978)
.+...... ++ ++....+ .....| |.. . + =+||-|.....+-..|.|.+ +.++++.+++.|.+.||
T Consensus 110 ~~~~~~~~--~s-vv~~~~~~w~d~~w~~~~~~~~~~~~~IYE~Hvg~f~~~~~g~~~ty~~~~~~l~~ylk~lG~t~ve 186 (639)
T PRK14706 110 FFEVRPNT--AS-IIWEDRFEWTDTRWMSSRTAGFDQPISIYEVHVGSWARRDDGWFLNYRELAHRLGEYVTYMGYTHVE 186 (639)
T ss_pred EEecCCCC--ce-EECCCCCCCCCcccccccCCccCCCcEEEEEehhhcccCCCCCccCHHHHHHHHHHHHHHcCCCEEE
Confidence 22221111 12 2211111 001111 110 1 1 14555554333212678875 56678999999999999
Q ss_pred EcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 315 LLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 315 ilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
|+|+...-.. .+--|.+..=|+.++-|-.++++
T Consensus 187 lmPv~e~~~~----~~wGY~~~~~~~~~~~~g~~~~~ 219 (639)
T PRK14706 187 LLGVMEHPFD----GSWGYQVTGYYAPTSRLGTPEDF 219 (639)
T ss_pred ccchhcCCCC----CCCCcCcccccccccccCCHHHH
Confidence 9999763211 12367777778888888766544
No 49
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=96.23 E-value=0.015 Score=52.40 Aligned_cols=53 Identities=25% Similarity=0.488 Sum_probs=43.8
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEE
Q 002027 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYV 88 (978)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv 88 (978)
++|+|+..+ .++.|.|+||- -+|++ .++|....+. |++++.||.+ ..+|||+|
T Consensus 2 ~~v~f~~~~---~a~~V~v~G~F---~~W~~--~~pm~~~~~~----~~~~~~L~~g-~y~YkF~V 54 (79)
T cd02859 2 VPTTFVWPG---GGKEVYVTGSF---DNWKK--KIPLEKSGKG----FSATLRLPPG-KYQYKFIV 54 (79)
T ss_pred eEEEEEEcC---CCcEEEEEEEc---CCCCc--cccceECCCC----cEEEEEcCCC-CEEEEEEE
Confidence 568888876 68999999975 67976 6899886643 9999999986 79999998
No 50
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.21 E-value=0.016 Score=52.49 Aligned_cols=54 Identities=20% Similarity=0.370 Sum_probs=42.3
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEE
Q 002027 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYV 88 (978)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv 88 (978)
++|+|++..+.. ++|+|+|+- -+|+ .++|+..+.+. |++++.++.+. .+|||+|
T Consensus 2 ~~vtf~~~ap~a--~~V~v~G~f---n~W~---~~~m~~~~~G~---w~~~~~l~~G~-y~Ykf~v 55 (82)
T cd02861 2 VPVVFAYRGPEA--DSVYLAGSF---NNWN---AIPMEREGDGL---WVVTVELRPGR-YEYKFVV 55 (82)
T ss_pred ccEEEEEECCCC--CEEEEEeEC---CCCC---cccCEECCCCc---EEEEEeCCCCc-EEEEEEE
Confidence 467888876632 899999984 5786 57888765444 99999998876 8999998
No 51
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.18 E-value=0.015 Score=52.61 Aligned_cols=54 Identities=26% Similarity=0.543 Sum_probs=44.1
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEE
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCK 231 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~ 231 (978)
++|+|++.++. .++|+|+|+- -+|+ ..+|...+...|++++.+++ +. .+|||++
T Consensus 2 ~~vtf~~~ap~---a~~V~v~G~f---n~W~---~~~m~~~~~G~w~~~~~l~~-G~-y~Ykf~v 55 (82)
T cd02861 2 VPVVFAYRGPE---ADSVYLAGSF---NNWN---AIPMEREGDGLWVVTVELRP-GR-YEYKFVV 55 (82)
T ss_pred ccEEEEEECCC---CCEEEEEeEC---CCCC---cccCEECCCCcEEEEEeCCC-Cc-EEEEEEE
Confidence 57999999885 4899999975 4687 46888877789999999984 54 7999998
No 52
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.02 E-value=0.17 Score=62.56 Aligned_cols=164 Identities=19% Similarity=0.289 Sum_probs=96.5
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccC-CCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG-ESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~-~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR 246 (978)
.++|+|-+|. -++|.|+|+- .+|+.. ..+|.... ...|++.+.-... .-.|||.+...+|....-..+ .
T Consensus 29 g~~FrvwAP~---A~~V~L~~df---n~w~~~-~~~m~~~~~~Gvw~~~i~~~~~--g~~Y~y~v~~~~g~~~~~~DP-Y 98 (613)
T TIGR01515 29 GTRFCVWAPN---AREVRVAGDF---NYWDGR-EHPMRRRNDNGIWELFIPGIGE--GELYKYEIVTNNGEIRLKADP-Y 98 (613)
T ss_pred cEEEEEECCC---CCEEEEEEec---CCCCCc-eecceEecCCCEEEEEeCCCCC--CCEEEEEEECCCCcEEEeCCC-C
Confidence 5899999987 6899999854 467543 35787653 6799987753212 348999998765554332333 1
Q ss_pred eEEecCCCCCCeeEEecccccc--CCCc---c------c---eEEeeecCccCCCCCCcccCHHH-HHHHHHHHHHcCCC
Q 002027 247 NLNVDFSNNQPRYIFLSDGMMR--EMPW---R------G---AGVAVPMFSVRSEADLGVGEFLD-LKLLVDWAVESGFH 311 (978)
Q Consensus 247 ~~~~p~~~~~~~~~~~~~~~~~--~~~~---R------~---~Gv~~~l~SLrs~~~~GIGdf~d-l~~~~d~~~~~G~~ 311 (978)
...++..+..++ +++....+. ...| | . .=--+|+.+.... |+|.+ +.+++|.+++.|.+
T Consensus 99 A~~~~~~~~~~s-~v~d~~~~~w~~~~w~~~~~~~~~~~~~~~iYe~hv~~~~~~-----g~~~~i~~~l~dyl~~LGvt 172 (613)
T TIGR01515 99 AFYAEVRPNTAS-LVYDLEGYSWQDQKWQEKRKAKTPYEKPVSIYELHLGSWRHG-----LSYRELADQLIPYVKELGFT 172 (613)
T ss_pred EeeeccCCCCcE-EEECCccCccCchhhhhcccccCcccCCceEEEEehhhccCC-----CCHHHHHHHHHHHHHHcCCC
Confidence 111221111122 222211110 0001 0 1 1113444444321 79987 45567999999999
Q ss_pred EEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 312 LVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 312 ~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
.|+|+|+...... .+--|.+..=|+.+|-|=++++|
T Consensus 173 ~i~L~Pi~e~~~~----~~wGY~~~~y~~~~~~~Gt~~dl 208 (613)
T TIGR01515 173 HIELLPVAEHPFD----GSWGYQVTGYYAPTSRFGTPDDF 208 (613)
T ss_pred EEEECCcccCCCC----CCCCCCcccCcccccccCCHHHH
Confidence 9999999874321 12368888888888888776554
No 53
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=96.02 E-value=0.033 Score=50.25 Aligned_cols=61 Identities=25% Similarity=0.384 Sum_probs=47.4
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCC
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGA 244 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~ 244 (978)
++|+|+... .+++|+|+||- -+|++ .++|...... |++.+.||+ + ..+|||++ +| .|...+
T Consensus 2 ~~v~f~~~~----~a~~V~v~G~F---~~W~~--~~pm~~~~~~-~~~~~~L~~-g-~y~YkF~V---dg--~w~~d~ 62 (79)
T cd02859 2 VPTTFVWPG----GGKEVYVTGSF---DNWKK--KIPLEKSGKG-FSATLRLPP-G-KYQYKFIV---DG--EWRHSP 62 (79)
T ss_pred eEEEEEEcC----CCcEEEEEEEc---CCCCc--cccceECCCC-cEEEEEcCC-C-CEEEEEEE---CC--EEEeCC
Confidence 678888887 48999999965 57986 4788876655 999999994 4 58999998 34 476554
No 54
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.84 E-value=0.17 Score=61.59 Aligned_cols=154 Identities=17% Similarity=0.237 Sum_probs=91.1
Q ss_pred EEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCC-Cee
Q 002027 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGA-NRN 247 (978)
Q Consensus 169 V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~-NR~ 247 (978)
|+|+|-+|. -++|.|+++ + +.++|...+...|++.+.-...+ ..|+|.+.+ .+. -.++ +|.
T Consensus 1 v~FrlwAP~---A~~V~L~l~------~---~~~~m~k~~~GvW~~~v~~~~~G--~~Y~y~v~g---~~~-v~DPya~~ 62 (542)
T TIGR02402 1 VRFRLWAPT---AASVKLRLN------G---ALHAMQRLGDGWFEITVPPVGPG--DRYGYVLDD---GTP-VPDPASRR 62 (542)
T ss_pred CEEEEECCC---CCEEEEEeC------C---CEEeCeECCCCEEEEEECCCCCC--CEEEEEEee---eEE-ecCccccc
Confidence 579999987 788888862 1 25688888889999999732234 489998843 100 0111 222
Q ss_pred EEecCCCCCCeeEEecccc-ccCCCc----cceEEe--eecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002027 248 LNVDFSNNQPRYIFLSDGM-MREMPW----RGAGVA--VPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPIND 320 (978)
Q Consensus 248 ~~~p~~~~~~~~~~~~~~~-~~~~~~----R~~Gv~--~~l~SLrs~~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~ 320 (978)
+.... ...+.++-.+.+ .....| ....|+ +|+-+... -|+|..+.+-+|.+++.|.+.|+|+|+++
T Consensus 63 ~~~~~--~~~S~V~d~~~~~w~~~~~~~~~~~~~viYE~hv~~f~~-----~G~~~gi~~~l~yl~~LGv~~i~L~Pi~~ 135 (542)
T TIGR02402 63 QPDGV--HGPSQVVDPDRYAWQDTGWRGRPLEEAVIYELHVGTFTP-----EGTFDAAIEKLPYLADLGITAIELMPVAQ 135 (542)
T ss_pred cccCC--CCCeEEecCcccCCCCccccCCCccccEEEEEEhhhcCC-----CCCHHHHHHhhHHHHHcCCCEEEeCcccc
Confidence 11111 112222211111 011111 122222 33333321 57999888888999999999999999986
Q ss_pred CCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 321 TSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 321 t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
.... .+..|.+.+-|+.+|-|-.++++
T Consensus 136 ~~~~----~~~GY~~~~~~~~~~~~G~~~e~ 162 (542)
T TIGR02402 136 FPGT----RGWGYDGVLPYAPHNAYGGPDDL 162 (542)
T ss_pred CCCC----CCCCCCccCccccccccCCHHHH
Confidence 4311 12478888888888888776554
No 55
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=94.61 E-value=0.56 Score=57.96 Aligned_cols=165 Identities=16% Similarity=0.176 Sum_probs=88.7
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCC---ccccccccccCCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWK---LQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGA 244 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~---~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~ 244 (978)
.|+|+|-+|. -++|.|++-. +|+ +...++|.......|++.|.-... .-.|||.+... |...+-..|
T Consensus 20 ~~~F~vwaP~---a~~V~l~~~~----~~~~~~~~~~~~m~~~~~gvw~~~i~~~~~--g~~Y~y~v~~~-~~~~~~~DP 89 (605)
T TIGR02104 20 KTVFRVWAPT---ATEVELLLYK----SGEDGEPYKVVKMKRGENGVWSAVLEGDLH--GYFYTYQVCIN-GKWRETVDP 89 (605)
T ss_pred eeEEEEECCC---CCEEEEEEEc----CCCCCccceEEecccCCCCEEEEEECCCCC--CCEEEEEEEcC-CCeEEEcCC
Confidence 3899999987 7789988743 343 345678988888999988863223 34899999763 221111111
Q ss_pred -CeeEEecCCCCCCeeEEeccc------cccC----CCccceEE--eeecCccCCCCCCc---ccCHHHHHH--------
Q 002027 245 -NRNLNVDFSNNQPRYIFLSDG------MMRE----MPWRGAGV--AVPMFSVRSEADLG---VGEFLDLKL-------- 300 (978)
Q Consensus 245 -NR~~~~p~~~~~~~~~~~~~~------~~~~----~~~R~~Gv--~~~l~SLrs~~~~G---IGdf~dl~~-------- 300 (978)
-|.+..+ +. .+ ++++.. +... .....--| =+||-+.-...+-| .|.|..+.+
T Consensus 90 ya~~~~~~--~~-~s-~v~d~~~~~~~~w~~~~~~~~~~~~~~vIYElhv~~ft~~~~~~~~~~G~f~~~~e~~~~~~~g 165 (605)
T TIGR02104 90 YAKAVTVN--GK-RG-AVIDLERTNPEGWEKDHRPRLENPEDAIIYELHIRDFSIHENSGVKNKGKYLGLTETGTKGPNG 165 (605)
T ss_pred CcceeccC--CC-cE-EEEcccccCccCcccccCCCCCChhHcEEEEEecchhccCCCCCcCCCCceeeeeccCcccccc
Confidence 1111110 00 01 111110 0000 00000111 13443333322223 467765443
Q ss_pred ---HHHHHHHcCCCEEEEcCCCCCCCC---CCCC-CCCCCCccCccccCcccc
Q 002027 301 ---LVDWAVESGFHLVQLLPINDTSVN---RMWW-DSYPYSSLSVFALHPLYL 346 (978)
Q Consensus 301 ---~~d~~~~~G~~~~QilPl~~t~~~---~~~~-d~SPYs~~S~falNPlyI 346 (978)
.+|.+++.|.+.|+|+||++.... .+.. -+.-|.+..=|+.++-|-
T Consensus 166 ~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~ 218 (605)
T TIGR02104 166 VSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYS 218 (605)
T ss_pred chhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhh
Confidence 489999999999999999875310 0000 013677777777777664
No 56
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=91.51 E-value=0.2 Score=59.05 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=56.1
Q ss_pred EEEEEEEEEE--CCCCCEEEEEeccCCcCCCCCCCceeccccCCCCC---ccEEEEEEcCCCceEEEEEEEEe
Q 002027 23 LTVKFRIPYY--THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDE---LIWSGSIAVPIGFSCEYSYYVVD 90 (978)
Q Consensus 23 ~~V~F~V~~~--t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~---~~W~~~V~lp~~~~~eYKYvv~d 90 (978)
+..+|.+-.. ..+++.+.++|+++.||+|++..+.+++....... ..|.+.|.+|....++|.|.|..
T Consensus 44 ~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~ 116 (417)
T KOG2421|consen 44 VIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVIIPRNIVIEYRYGITS 116 (417)
T ss_pred eecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEeccccccccceeeee
Confidence 4556666544 56999999999999999999999999998765332 44888999999989999999985
No 57
>PLN02316 synthase/transferase
Probab=91.32 E-value=8 Score=50.54 Aligned_cols=258 Identities=14% Similarity=0.222 Sum_probs=138.2
Q ss_pred CceEEEEEEEEEE-CCCCCEEEEEeccCCcCCCCCCCce--eccccCCCCCccEEEEEEcCCCceEEEEEEEEeCC-CCe
Q 002027 20 VKSLTVKFRIPYY-THWGQSLLVCGSEPVLGSWDVKKGF--LLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVDDR-KNL 95 (978)
Q Consensus 20 p~~~~V~F~V~~~-t~~Gq~L~VvGs~~~LG~W~~~~av--~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d~~-g~~ 95 (978)
.+.++|.++-... +.-.+.|+|.|+. -+|.....+ .|-......+..|.++|.+|.. ..---||..|.. +..
T Consensus 328 G~~v~lyYN~~~~~L~~~~~v~i~gg~---N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~-A~~mDfVFsdg~~~~~ 403 (1036)
T PLN02316 328 GDTVKLYYNRSSGPLAHSTEIWIHGGY---NNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPER-ALVLDWVFADGPPGNA 403 (1036)
T ss_pred CCEEEEEECCCCCCCCCCCcEEEEEeE---cCCCCCCcccceeecccCCCCCEEEEEEecCCC-ceEEEEEEecCCcccc
Confidence 3446666666554 6667899999986 678875543 2222221123459999999985 344445554421 223
Q ss_pred EEeecCCCceEEcCCCCCCCceEEEecccCccccC-------------------------------------CCCcccch
Q 002027 96 LRWEMGKKRKLLLHETIKDGEVVELHDLWQTGGDA-------------------------------------LPFRSAFK 138 (978)
Q Consensus 96 ~~WE~g~NR~l~l~~~~~~g~~v~v~D~W~~~~~~-------------------------------------~~~ss~F~ 138 (978)
..|+.+.+.-+.++-. .+ +...+.|....+. .+.+..
T Consensus 404 ~~yDNn~~~Dyh~~v~--~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~r~k~~~~a~~~ae~k~~~~~~~l~~~~-- 477 (1036)
T PLN02316 404 RNYDNNGRQDFHAIVP--NN--IPEELYWVEEEHQIYRKLQEERRLREEAIRAKAEKTARMKAEMKEKTLKMFLLSQK-- 477 (1036)
T ss_pred cccccCCCcceeeecC--CC--CchhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc--
Confidence 2488766555555431 11 2223456421000 000000
Q ss_pred hhhccccccccccccccccccccCCCCceEEEEEEEecccCCCCEEEEecCCcccCCCCcccc----ccccccC-CCcEE
Q 002027 139 NVIFRRSFSLDIERSDGLIQNKLEQEDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNG----LKLSYAG-ESVWE 213 (978)
Q Consensus 139 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~a----v~L~~~~-~~~W~ 213 (978)
.+++..+. .+...+.++|...-..+.+.--+.|++.|+.- +|.-..+ +.|..++ +..|.
T Consensus 478 ~~~~teP~-------------~~~aG~~v~v~Yn~~~t~l~~~~ev~~~g~~N---rWth~~~~~~~~~m~~~~~g~~~~ 541 (1036)
T PLN02316 478 HIVYTEPL-------------EVQAGTTVTVLYNPANTVLNGKPEVWFRGSFN---RWTHRLGPLPPQKMVPADNGSHLK 541 (1036)
T ss_pred eEEEecCC-------------CCCCCCEEEEEECCCCCcCCCCceEEEEcccc---CcCCCCCCCCceeeeecCCCceEE
Confidence 01111111 13445678888887776667778999999864 5666543 4676654 45569
Q ss_pred EEEeccCCCCceeeeEEEECCCCCeeEeeCCCeeEEecCCCCCCeeEEeccccccCCCccceEEeeecCccCCCCCCccc
Q 002027 214 ADCVIQRGDFPIKYKYCKSGKTGNISLETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLGVG 293 (978)
Q Consensus 214 ~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR~~~~p~~~~~~~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~GIG 293 (978)
++|.+|..-.-+- ||-.+..+.-.|.+....-+.+|..+..+. .++-|-.=|+...+-+ ++ +|
T Consensus 542 a~v~vP~da~~md--fvFs~~~~g~~yDn~~~~dyh~~v~g~~~~----------~~pM~Il~VSsE~~P~-aK----vG 604 (1036)
T PLN02316 542 ATVKVPLDAYMMD--FVFSEKEEGGIFDNRNGLDYHIPVFGGIAK----------EPPMHIVHIAVEMAPI-AK----VG 604 (1036)
T ss_pred EEEEccccceEEE--EEEecCCCCCCcCCCCCcCCcccccCCCCC----------CCCcEEEEEEcccCCC-CC----cC
Confidence 9999994433344 444443222345554444455554432111 0011222222222211 12 34
Q ss_pred CHHH-HHHHHHHHHHcCCCEEEEcCCCC
Q 002027 294 EFLD-LKLLVDWAVESGFHLVQLLPIND 320 (978)
Q Consensus 294 df~d-l~~~~d~~~~~G~~~~QilPl~~ 320 (978)
-++| +..|..-+++.|.++-=++|.-+
T Consensus 605 GLgDVV~sLp~ALa~~Gh~V~VitP~Y~ 632 (1036)
T PLN02316 605 GLGDVVTSLSRAVQDLNHNVDIILPKYD 632 (1036)
T ss_pred cHHHHHHHHHHHHHHcCCEEEEEecCCc
Confidence 4444 78888999999999999999654
No 58
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=91.11 E-value=1.4 Score=41.54 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=48.2
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccC-----CCCceeeeEEEECCCCCe
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQR-----GDFPIKYKYCKSGKTGNI 238 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~-----~~~~~eYKyv~~~~~g~v 238 (978)
..++|++-+|. -++|.|+|+- -+|++.. .+|.......|++.+.... ....-.|||.+...+|..
T Consensus 5 ~g~~FrvwAP~---A~~V~l~GdF---n~W~~~~-~~m~k~~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~ 74 (99)
T cd02854 5 GGVTYREWAPN---AEEVYLIGDF---NNWDRNA-HPLKKDEFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEW 74 (99)
T ss_pred CeEEEEEECCC---CCEEEEEccC---CCCCCcC-cccEECCCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCE
Confidence 35899999987 8999999865 5898743 5687777889999987421 123458999998755653
No 59
>smart00642 Aamy Alpha-amylase domain.
Probab=90.64 E-value=0.64 Score=47.95 Aligned_cols=59 Identities=15% Similarity=0.223 Sum_probs=47.8
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 291 GVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 291 GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
|.|||.++.+-++.+++.|.+.|+|.|++...... .....|.+.+-+..||-|=+.+++
T Consensus 14 ~~G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~--~~~~gY~~~d~~~i~~~~Gt~~d~ 72 (166)
T smart00642 14 GGGDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGY--PSYHGYDISDYKQIDPRFGTMEDF 72 (166)
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECcceeCCCCC--CCCCCcCccccCCCCcccCCHHHH
Confidence 58899998888899999999999999998765321 123589999999999988776554
No 60
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=86.03 E-value=0.13 Score=61.69 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=82.6
Q ss_pred CeEeeccccccCCCchhhccCccc--ccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHH-----HHHHhcc
Q 002027 488 VVLKGDLPIGVDRNSVDTWVYPNL--FRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRAR-----LTQMSKY 560 (978)
Q Consensus 488 I~L~gDLpigv~~dSaDvWa~p~l--F~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~R-----lr~~~~~ 560 (978)
.-..++-.++.++...|+++.++. |.++...+++|+..+.++++|+.+.+.+..+-+..|++|++| .-.++..
T Consensus 69 SPYs~~S~~a~N~~~Id~~~l~e~~~~~~~~~~~~l~~~~~~~~vdy~~v~~~K~~~L~~~~~~f~~~~~~~~~f~~F~~ 148 (520)
T COG1640 69 SPYSPSSRRALNPLYIDVEALPEFQDFLLDKDLQALPQLRALDWVDYAKVTALKRKALEKAFANFKKRKEREKDFAAFCQ 148 (520)
T ss_pred CCCCchhhhccCceeecHHHhhhhhhhccHHHHhhhhhhcccccccHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 445566678889999999999999 999999999999999999999999999999999999999999 3345556
Q ss_pred CCEEEecccccccee--------eeecCCC
Q 002027 561 FTAYRIDHILGFFRI--------WELPEHA 582 (978)
Q Consensus 561 ~dalRIDH~~GffR~--------W~IP~~~ 582 (978)
.+..++||+-.|++| |-....+
T Consensus 149 ~~~~wL~d~A~F~Al~e~~~~~~W~~Wp~~ 178 (520)
T COG1640 149 EEGYWLDDYALFMALKEHFHAAGWQVWPDS 178 (520)
T ss_pred hccchhHHHHHHHHHHHHhcccccCCCChh
Confidence 788999999999999 7666543
No 61
>PRK03705 glycogen debranching enzyme; Provisional
Probab=85.38 E-value=14 Score=46.43 Aligned_cols=56 Identities=23% Similarity=0.488 Sum_probs=38.7
Q ss_pred ccCHHHHHH--HHHHHHHcCCCEEEEcCCCCCCCCCC-----CCCCCCCCccCccccCccccC
Q 002027 292 VGEFLDLKL--LVDWAVESGFHLVQLLPINDTSVNRM-----WWDSYPYSSLSVFALHPLYLR 347 (978)
Q Consensus 292 IGdf~dl~~--~~d~~~~~G~~~~QilPl~~t~~~~~-----~~d~SPYs~~S~falNPlyI~ 347 (978)
-|.|..+.+ .+|.+++.|.+.|+|+|+.+...... ....--|.+.+=|+.+|-|-+
T Consensus 173 ~Gtf~g~~~~~~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt 235 (658)
T PRK03705 173 RGTYAALGHPVMIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYAS 235 (658)
T ss_pred cccHHHhhcccchHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCC
Confidence 378877664 58999999999999999987532100 000125778777888877753
No 62
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=85.19 E-value=2.9 Score=38.15 Aligned_cols=55 Identities=22% Similarity=0.170 Sum_probs=38.4
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEE
Q 002027 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYV 88 (978)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv 88 (978)
..++|++-+++- ++|.|+|+-. + ...++|+..+.+. |++++.-..+...+|+|.+
T Consensus 6 ~~v~F~vwAP~A--~~V~L~~~~~---~---~~~~~m~~~~~G~---W~~~v~~l~~g~Y~Y~~~v 60 (85)
T cd02858 6 RTVTFRLFAPKA--NEVQVRGSWG---G---AGSHPMTKDEAGV---WSVTTGPLAPGIYTYSFLV 60 (85)
T ss_pred CcEEEEEECCCC--CEEEEEeecC---C---CccEeCeECCCeE---EEEEECCCCCcEEEEEEEE
Confidence 468999987753 8999998752 2 3468898766554 9998842233446788877
No 63
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=85.04 E-value=2.5 Score=37.96 Aligned_cols=62 Identities=24% Similarity=0.410 Sum_probs=47.7
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCcccccccc-ccCCCcEEEEEe--ccCCCCceeeeEEEECCCC
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLS-YAGESVWEADCV--IQRGDFPIKYKYCKSGKTG 236 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~-~~~~~~W~~~v~--lp~~~~~~eYKyv~~~~~g 236 (978)
..|+|+|-+|. -++|.|+|.-.. +|+. ..++|. ......|+++++ ++ .+ ...|+|.+...+|
T Consensus 11 ~~~~F~vwaP~---A~~V~l~~~~~~--~~~~-~~~~m~~~~~~G~w~~~~~~~~~-~g-~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 11 GGVTFRVWAPN---AKSVELVLYFNG--SWPA-EEYPMTRKDDDGVWEVTVPGDLP-PG-GYYYKYRIDGDDG 75 (85)
T ss_dssp TEEEEEEE-TT---ESEEEEEEETTT--SSEE-EEEEEEEECTTTEEEEEEEGCGT-TT-T-EEEEEEEETTT
T ss_pred CEEEEEEECCC---CCEEEEEEEeee--cCCC-ceEEeeecCCCCEEEEEEcCCcC-CC-CEEEEEEEEeCCC
Confidence 57999999988 889999998887 6664 457898 678889999998 44 22 3699999987653
No 64
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=84.60 E-value=1.9 Score=52.73 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=50.7
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 283 SVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 283 SLrs~~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
|.....+-|+|||..+.+-+|.+++.|.+.|.|+|+..... ..++|.+..-+..||-|=+.+++
T Consensus 14 ~f~~~~~~~~G~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~-----~~~gY~~~d~~~id~~~Gt~~~~ 77 (543)
T TIGR02403 14 SFYDSTGDGTGDLRGIIEKLDYLKKLGVDYIWLNPFYVSPQ-----KDNGYDVSDYYAINPLFGTMADF 77 (543)
T ss_pred HHhcCCCCCccCHHHHHHhHHHHHHcCCCEEEECCcccCCC-----CCCCCCccccCccCcccCCHHHH
Confidence 33333345799999988889999999999999999998642 22599999988899988776554
No 65
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=84.59 E-value=23 Score=46.82 Aligned_cols=145 Identities=17% Similarity=0.253 Sum_probs=76.8
Q ss_pred EEEEEEecccCCCCEEEEecCCcccCCCCc-cccccccccCCCcEEEEEe-ccCC--C-CceeeeEEEECCCCCeeEeeC
Q 002027 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKL-QNGLKLSYAGESVWEADCV-IQRG--D-FPIKYKYCKSGKTGNISLETG 243 (978)
Q Consensus 169 V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~-~~av~L~~~~~~~W~~~v~-lp~~--~-~~~eYKyv~~~~~g~v~WE~g 243 (978)
++|+|-+|+ -++|.|++--. ++|+. ...++|.......|++.|. +... + ....|+|.+...+. ..--..
T Consensus 329 v~F~vWAP~---A~~V~L~lyd~--~~~~~~~~~~~m~~~~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~-~~~~~D 402 (1111)
T TIGR02102 329 VTLKLWSPS---ADHVSVVLYDK--DDQDKVVGTVELKKGDRGVWEVQLTKENTGIDSLTGYYYHYEITRGGD-KVLALD 402 (1111)
T ss_pred EEEEEECCC---CCEEEEEEEeC--CCCCCceeeEecccCCCCEEEEEECCcccCcccCCCceEEEEEECCCc-eEEEeC
Confidence 899999998 88899887322 44543 2357888888899999986 2210 0 13589998865321 100000
Q ss_pred C-CeeEEecCC-------CCCCeeEEeccc------c----ccCCCccceEEe--eecCccCCCCCC------cccCHHH
Q 002027 244 A-NRNLNVDFS-------NNQPRYIFLSDG------M----MREMPWRGAGVA--VPMFSVRSEADL------GVGEFLD 297 (978)
Q Consensus 244 ~-NR~~~~p~~-------~~~~~~~~~~~~------~----~~~~~~R~~Gv~--~~l~SLrs~~~~------GIGdf~d 297 (978)
+ -|.+....+ ....+ ++++.. + .+....+.--|+ +||-+.-+..+. +.|+|..
T Consensus 403 PYA~al~~~n~~~~~~~~~~~ks-~vvD~~~~~p~~~~~~~~~~~~~~~d~vIYElHVrdFt~d~~~~~~~~~~~Gtf~g 481 (1111)
T TIGR02102 403 PYAKSLAAWNDATSDDQIKVAKA-AFVDPSSLGPQELDFAKIENFKKREDAIIYEAHVRDFTSDPAIAGDLTAQFGTFAA 481 (1111)
T ss_pred hhheEEeccCcccccccCCCCce-EEEcCcccCccccccccccccCCccceEEEEEechhhCcCCCCCcccccCCcCHHH
Confidence 0 000110000 00001 111111 0 000011111121 233333222221 3589998
Q ss_pred HHHHHHHHHHcCCCEEEEcCCCC
Q 002027 298 LKLLVDWAVESGFHLVQLLPIND 320 (978)
Q Consensus 298 l~~~~d~~~~~G~~~~QilPl~~ 320 (978)
+.+=+|.++++|.+.|||+|+.+
T Consensus 482 l~ekLdYLkeLGVT~I~LmPv~d 504 (1111)
T TIGR02102 482 FVEKLDYLQDLGVTHIQLLPVLS 504 (1111)
T ss_pred HHHhHHHHHHcCCCEEEEcCccc
Confidence 88888999999999999999976
No 66
>PLN02960 alpha-amylase
Probab=84.57 E-value=16 Score=46.81 Aligned_cols=57 Identities=14% Similarity=0.318 Sum_probs=43.6
Q ss_pred cccCHHHHH-HHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 291 GVGEFLDLK-LLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 291 GIGdf~dl~-~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
|+|+|.++. ++++.+++.|.+.|+|+||....... +.=|.+..=|+.++-|-.++++
T Consensus 411 ~~gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~----swGY~~~~yfa~~~~yGtp~df 468 (897)
T PLN02960 411 KISSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYS----SVGYKVTNFFAVSSRFGTPDDF 468 (897)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCC----CCCCCcccCCCcccccCCHHHH
Confidence 689999875 78999999999999999998643221 2247777777777777776655
No 67
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=84.40 E-value=1.7 Score=47.66 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=24.6
Q ss_pred cCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002027 293 GEFLDLKLLVDWAVESGFHLVQLLPIND 320 (978)
Q Consensus 293 Gdf~dl~~~~d~~~~~G~~~~QilPl~~ 320 (978)
|||..+.+=+|.+++.|.+.|.|+|+..
T Consensus 1 Gd~~gi~~kLdyl~~lGv~~I~l~Pi~~ 28 (316)
T PF00128_consen 1 GDFRGIIDKLDYLKDLGVNAIWLSPIFE 28 (316)
T ss_dssp SSHHHHHHTHHHHHHHTESEEEESS-EE
T ss_pred CCHHHHHHhhHHHHHcCCCceecccccc
Confidence 7998888888999999999999999876
No 68
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=83.42 E-value=5.4 Score=36.76 Aligned_cols=78 Identities=12% Similarity=0.270 Sum_probs=42.6
Q ss_pred ceEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccC----CCcEEEEEeccCCCCceeeeEEEECCCCCeeEe
Q 002027 166 SVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG----ESVWEADCVIQRGDFPIKYKYCKSGKTGNISLE 241 (978)
Q Consensus 166 ~~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~----~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE 241 (978)
+++|.+.-....+.--++|++.+.- ++|.....+.|.... ...|+++|.+|.... +--|+..|. .-.|+
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~---n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~--~~dfvF~dg--~~~wD 75 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGF---NRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAY--VMDFVFNDG--AGNWD 75 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETT---S-B-SSS-EE-EEESS---TTEEEEEEE--TTTS--EEEEEEE-S--SS-EE
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecC---CCCCcCCCCCcceeeeeecCCEEEEEEEEcCCce--EEEEEEcCC--CCcEe
Confidence 4667776543333445788888874 799998888887766 689999999995443 555666654 44688
Q ss_pred eCCCeeEEe
Q 002027 242 TGANRNLNV 250 (978)
Q Consensus 242 ~g~NR~~~~ 250 (978)
...+.-+.+
T Consensus 76 NN~g~nY~~ 84 (87)
T PF03423_consen 76 NNNGANYHF 84 (87)
T ss_dssp STTTS-EEE
T ss_pred CCCCccEEE
Confidence 755444443
No 69
>KOG2421 consensus Predicted starch-binding protein [General function prediction only]
Probab=83.13 E-value=1.3 Score=52.26 Aligned_cols=68 Identities=26% Similarity=0.445 Sum_probs=52.4
Q ss_pred eEEEEEEEecc-cCCCCEEEEecCCcccCCCCccccccccccCC------CcEEEEEeccCCCCceeeeEEEECCC
Q 002027 167 VLVRFKICIPN-IEEDASVYVIGSTSMLGQWKLQNGLKLSYAGE------SVWEADCVIQRGDFPIKYKYCKSGKT 235 (978)
Q Consensus 167 ~~V~F~v~~~~-~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~------~~W~~~v~lp~~~~~~eYKyv~~~~~ 235 (978)
+...|.+.... +.+++.+.++|+++.||||+++.+.+++..+. ..|+..+.+| -...++|-|.+...+
T Consensus 44 ~~~~~~v~~n~~~~~~~~~~~vg~~~~lg~f~~~~~~pls~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~i~~~~ 118 (417)
T KOG2421|consen 44 VIGHFGVGKNQLLYPDEYVAVVGENSALGNFNSAAALPLSFIEFDVQRTNRDWVAPVIIP-RNIVIEYRYGITSED 118 (417)
T ss_pred eecccccceecccCCcceeEeecccccccccchhhhcCccccchheeeeeccccceeEec-cccccccceeeeecC
Confidence 44555554443 46999999999999999999999998876321 6688888888 556789999888753
No 70
>PRK10785 maltodextrin glucosidase; Provisional
Probab=83.01 E-value=25 Score=43.60 Aligned_cols=54 Identities=17% Similarity=0.144 Sum_probs=44.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 292 VGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 292 IGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
-|||..+.+=+|.+++.|.+.|.|+|+.+... ...|.+..=+..||.|=+.+++
T Consensus 175 GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s------~hgYd~~Dy~~iDp~~Gt~~df 228 (598)
T PRK10785 175 GGDLDGISEKLPYLKKLGVTALYLNPIFTAPS------VHKYDTEDYRHVDPQLGGDAAL 228 (598)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEeCCcccCCC------CCCcCcccccccCcccCCHHHH
Confidence 48998888888999999999999999987532 2478888888899988776654
No 71
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=82.00 E-value=4.4 Score=37.00 Aligned_cols=55 Identities=18% Similarity=0.225 Sum_probs=39.3
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEE
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCK 231 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~ 231 (978)
..|+|++-+|. -++|.|+|+-. + ....+|...+...|++++.-. .+..-+|+|++
T Consensus 6 ~~v~F~vwAP~---A~~V~L~~~~~---~---~~~~~m~~~~~G~W~~~v~~l-~~g~Y~Y~~~v 60 (85)
T cd02858 6 RTVTFRLFAPK---ANEVQVRGSWG---G---AGSHPMTKDEAGVWSVTTGPL-APGIYTYSFLV 60 (85)
T ss_pred CcEEEEEECCC---CCEEEEEeecC---C---CccEeCeECCCeEEEEEECCC-CCcEEEEEEEE
Confidence 46999999987 68999998752 2 335689888889999998422 22224677765
No 72
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=77.37 E-value=37 Score=42.98 Aligned_cols=55 Identities=29% Similarity=0.522 Sum_probs=37.4
Q ss_pred ccCHHHHHH--HHHHHHHcCCCEEEEcCCCCCCCCCC--C---CCCCCCCccCccccCcccc
Q 002027 292 VGEFLDLKL--LVDWAVESGFHLVQLLPINDTSVNRM--W---WDSYPYSSLSVFALHPLYL 346 (978)
Q Consensus 292 IGdf~dl~~--~~d~~~~~G~~~~QilPl~~t~~~~~--~---~d~SPYs~~S~falNPlyI 346 (978)
.|+|..+.+ .+|.+++.|.+.|+|+|+.+...... . ...--|.+.+=|+.+|-|-
T Consensus 178 ~Gtf~Gi~~~~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~ 239 (688)
T TIGR02100 178 RGTYAGLAHPAMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYL 239 (688)
T ss_pred ccCHHHHhccchhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhc
Confidence 589987765 68999999999999999987531100 0 0012477777677666663
No 73
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=77.30 E-value=14 Score=34.06 Aligned_cols=79 Identities=15% Similarity=0.271 Sum_probs=39.6
Q ss_pred eEEEEEEEEEE-CCCCCEEEEEeccCCcCCCCCCCceeccccCC-CCCccEEEEEEcCCCceEEEEEEEEeCCCCeEEee
Q 002027 22 SLTVKFRIPYY-THWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQ-DDELIWSGSIAVPIGFSCEYSYYVVDDRKNLLRWE 99 (978)
Q Consensus 22 ~~~V~F~V~~~-t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~-~~~~~W~~~V~lp~~~~~eYKYvv~d~~g~~~~WE 99 (978)
+++|.|.-... ..--+.|++.+.. ++|.....+.|..... .....|+++|.+|... .+-.||..| |.-. |+
T Consensus 3 ~vtVyYn~~~~~l~g~~~v~~~~G~---n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a-~~~dfvF~d--g~~~-wD 75 (87)
T PF03423_consen 3 TVTVYYNPSLTALSGAPNVHLHGGF---NRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDA-YVMDFVFND--GAGN-WD 75 (87)
T ss_dssp EEEEEE---E-SSS-S-EEEEEETT---S-B-SSS-EE-EEESS---TTEEEEEEE--TTT-SEEEEEEE---SSS--EE
T ss_pred EEEEEEEeCCCCCCCCCcEEEEecC---CCCCcCCCCCcceeeeeecCCEEEEEEEEcCCc-eEEEEEEcC--CCCc-Ee
Confidence 46677755433 3334688888875 8999999999987651 0013499999998762 244555544 3333 88
Q ss_pred cCCCceEE
Q 002027 100 MGKKRKLL 107 (978)
Q Consensus 100 ~g~NR~l~ 107 (978)
.....-+.
T Consensus 76 NN~g~nY~ 83 (87)
T PF03423_consen 76 NNNGANYH 83 (87)
T ss_dssp STTTS-EE
T ss_pred CCCCccEE
Confidence 76544443
No 74
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=76.71 E-value=11 Score=35.54 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=44.0
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcC------CCceEEEEEEEEeCCCCeE
Q 002027 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVP------IGFSCEYSYYVVDDRKNLL 96 (978)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp------~~~~~eYKYvv~d~~g~~~ 96 (978)
-.++|+|-++ --++|.|+|+- -+|++. ..+|...+.+ +|+++|..- ....-.|||.|...+|+.+
T Consensus 5 ~g~~FrvwAP--~A~~V~l~GdF---n~W~~~-~~~m~k~~~G---~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~ 75 (99)
T cd02854 5 GGVTYREWAP--NAEEVYLIGDF---NNWDRN-AHPLKKDEFG---VWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWI 75 (99)
T ss_pred CeEEEEEECC--CCCEEEEEccC---CCCCCc-CcccEECCCC---EEEEEECCcccccccCCCCCEEEEEEEeCCCCEE
Confidence 3578888766 34689999874 688764 4568765444 499888631 1245689999976556553
No 75
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=76.00 E-value=6.3 Score=38.21 Aligned_cols=81 Identities=10% Similarity=0.079 Sum_probs=48.6
Q ss_pred ccCCCCcCCCceEEEEEEEEEECCCCCEEEE-EeccCCcCCCCCCCceeccccC-CCCCccEEEEEEcCCCceEEEEEEE
Q 002027 11 KSSKPLTMSVKSLTVKFRIPYYTHWGQSLLV-CGSEPVLGSWDVKKGFLLSPVH-QDDELIWSGSIAVPIGFSCEYSYYV 88 (978)
Q Consensus 11 ~~~~~~~~~p~~~~V~F~V~~~t~~Gq~L~V-vGs~~~LG~W~~~~av~L~~~~-~~~~~~W~~~V~lp~~~~~eYKYvv 88 (978)
.|..+-+.+..+++|+|++... -=++|.| .|+.-..+.....+-++|+... +.....|+++|.++.. .+.|.|.|
T Consensus 11 ~s~y~y~~~~~~l~IRLRt~k~--Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~-r~~Y~F~l 87 (120)
T PF02903_consen 11 DSEYAYPYDGDTLHIRLRTAKN--DVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEK-RLRYYFEL 87 (120)
T ss_dssp STTTEEEECTTEEEEEEEEETT--T-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTS-EEEEEEEE
T ss_pred CCCceEecCCCEEEEEEEecCC--CCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCC-eEEEEEEE
Confidence 3344444456566666666532 1225554 5666555444456778887543 2334789999999865 59999999
Q ss_pred EeCCCCe
Q 002027 89 VDDRKNL 95 (978)
Q Consensus 89 ~d~~g~~ 95 (978)
.+ +|..
T Consensus 88 ~~-~~~~ 93 (120)
T PF02903_consen 88 ED-GGET 93 (120)
T ss_dssp EE-TTEE
T ss_pred Ee-CCEE
Confidence 87 4433
No 76
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=75.54 E-value=5.1 Score=47.28 Aligned_cols=59 Identities=20% Similarity=0.424 Sum_probs=49.8
Q ss_pred CccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccCh
Q 002027 282 FSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRV 348 (978)
Q Consensus 282 ~SLrs~~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l 348 (978)
.++=|+. +|.|.+-.+...-+++.|..+|-+.||+.+|.. .||||-..-+.+||.+...
T Consensus 11 QTvlsk~---~G~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S-----~S~YSI~Dql~~~~~~~~~ 69 (423)
T PF14701_consen 11 QTVLSKW---MGPFSDWEKHLKVISEKGYNMIHFTPLQERGES-----NSPYSIYDQLKFDPDFFPP 69 (423)
T ss_pred EEEhhhh---cCCHhHHHHHHHHHHHcCCcEEEecccccCCCC-----CCCccccchhhcChhhcCC
Confidence 3455554 899999888899999999999999999999854 3899999988888887755
No 77
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=75.29 E-value=5.7 Score=48.72 Aligned_cols=58 Identities=17% Similarity=0.291 Sum_probs=46.5
Q ss_pred CCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 289 DLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 289 ~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
+-|+|||..+.+-+|.+++.|.+.|.|+|+.+... ....|.+..=+..||-|=..+++
T Consensus 26 ~~~~Gdl~gi~~~ldyl~~lGv~~i~l~P~~~~~~-----~~~gY~~~d~~~id~~~Gt~~d~ 83 (551)
T PRK10933 26 GSGTGDLRGVTQRLDYLQKLGVDAIWLTPFYVSPQ-----VDNGYDVANYTAIDPTYGTLDDF 83 (551)
T ss_pred CCCCcCHHHHHHhhHHHHhCCCCEEEECCCCCCCC-----CCCCCCcccCCCcCcccCCHHHH
Confidence 34799999988889999999999999999985431 12488888888888888766544
No 78
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=74.45 E-value=13 Score=32.36 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=40.3
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEe
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVD 90 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d 90 (978)
.++|+|..+. +++|.|+++-.. | ...++|....++. |+++|.........|+|.+..
T Consensus 5 ~v~f~v~ap~--a~~v~l~~~~~~---~--~~~~~~~~~~~g~---w~~~v~~~~~~~~~Y~~~v~~ 61 (83)
T cd02688 5 GVTFTVRGPK--AQRVSLAGSFNG---D--TQLIPMTKVEDGY---WEVELPLPSPGKYQYKYVLDG 61 (83)
T ss_pred cEEEEEECCC--CCEEEEEEEECC---C--CCcccCEECCCce---EEEEEcCCCCCCeEEEEEEeC
Confidence 5788887553 488999998642 4 2457787766544 999998765245789999964
No 79
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=73.58 E-value=12 Score=32.55 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=43.9
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEECC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGK 234 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~ 234 (978)
.|+|.|.++. +++|.|+++-.. |. +..+|.......|++.+.... .-...|+|.+...
T Consensus 5 ~v~f~v~ap~---a~~v~l~~~~~~---~~--~~~~~~~~~~g~w~~~v~~~~-~~~~~Y~~~v~~~ 62 (83)
T cd02688 5 GVTFTVRGPK---AQRVSLAGSFNG---DT--QLIPMTKVEDGYWEVELPLPS-PGKYQYKYVLDGG 62 (83)
T ss_pred cEEEEEECCC---CCEEEEEEEECC---CC--CcccCEECCCceEEEEEcCCC-CCCeEEEEEEeCC
Confidence 5899999886 689999998643 43 346788777789999998873 1246899998764
No 80
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=72.77 E-value=26 Score=45.49 Aligned_cols=57 Identities=19% Similarity=0.268 Sum_probs=41.2
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCcccccccccc-CCCcEEEEEeccCCCCceeeeEEEE
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA-GESVWEADCVIQRGDFPIKYKYCKS 232 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~-~~~~W~~~v~lp~~~~~~eYKyv~~ 232 (978)
.++|+|-+|+ -++|.|++-- ++++....++|... ....|++.+.-... ...|+|.+.
T Consensus 136 gv~FrVWAPt---A~~V~L~Ly~---~~~~~~~~~~M~~~~~~GVWsv~v~g~~~--G~~Y~Y~V~ 193 (898)
T TIGR02103 136 GVTFRLWAPT---AQQVKLHIYS---ASKKVETTLPMTRDSTSGVWSAEGGSSWK--GAYYRYEVT 193 (898)
T ss_pred cEEEEEECCC---CCEEEEEEEc---CCCCccceEeCccCCCCCEEEEEECcCCC--CCEeEEEEE
Confidence 5899999998 7889998644 23444556788775 57899999864323 347999886
No 81
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=72.73 E-value=60 Score=43.83 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=43.3
Q ss_pred ccCHHHHH--HHHHHHHHcCCCEEEEcCCCCCCCCCC--CC--CC-CCCCccCccccCcccc--Chhhh
Q 002027 292 VGEFLDLK--LLVDWAVESGFHLVQLLPINDTSVNRM--WW--DS-YPYSSLSVFALHPLYL--RVQAL 351 (978)
Q Consensus 292 IGdf~dl~--~~~d~~~~~G~~~~QilPl~~t~~~~~--~~--d~-SPYs~~S~falNPlyI--~l~~l 351 (978)
-|.|..|. ..++.+++.|.+.|+|+|+++...... .. .+ --|.+.+=|+.||-|- ..+++
T Consensus 181 ~Gt~~~l~~~~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~ef 249 (1221)
T PRK14510 181 RGTFAKLAAPEAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEF 249 (1221)
T ss_pred CcHHhhcCCchhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHH
Confidence 36676666 788999999999999999997642110 00 00 1399999999999998 55544
No 82
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=71.59 E-value=3.5 Score=45.62 Aligned_cols=78 Identities=29% Similarity=0.511 Sum_probs=48.7
Q ss_pred cCCeEeeccccccCCCchhhccCcccccccCcccCCCC---CCCcCCCCCCCCCCCHHHHH-----HhhhHHHHHHHHHH
Q 002027 486 KGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPD---YFDKNGQNWGFPTYNWEEMS-----KDNYAWWRARLTQM 557 (978)
Q Consensus 486 ~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaPPD---~Fs~~GQnWG~P~ynw~~l~-----~~gy~ww~~Rlr~~ 557 (978)
+-|.|.||+=| ++.--|+|.....+.....+|.+|. .|. .=.++|+- +.++ ...|.||--|.+..
T Consensus 141 ~~~vl~GD~NI--ap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~-~ll~~G~~----D~~R~~~p~~~~YTwW~YR~~~~ 213 (261)
T COG0708 141 KPVVLCGDFNI--APEEIDVANPKKRWLNEGNSGFLPEERAWFR-RLLNAGFV----DTFRLFHPEPEKYTWWDYRANAA 213 (261)
T ss_pred CCEEEeccccc--CCchhcccCchhhhhcCCCCCCCHHHHHHHH-HHHHcchh----hhhHhhCCCCCcccccccccchh
Confidence 55999999875 8888999955344444456777776 111 11123311 1111 12499999998844
Q ss_pred hccCCEEEeccccc
Q 002027 558 SKYFTAYRIDHILG 571 (978)
Q Consensus 558 ~~~~dalRIDH~~G 571 (978)
-+- -..||||++.
T Consensus 214 ~~n-~G~RID~~l~ 226 (261)
T COG0708 214 RRN-RGWRIDYILV 226 (261)
T ss_pred hhc-CceeEEEEEe
Confidence 443 6799999975
No 83
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=71.19 E-value=7.4 Score=47.54 Aligned_cols=56 Identities=21% Similarity=0.356 Sum_probs=45.1
Q ss_pred cccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 291 GVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 291 GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
|+|||..+.+-+|.+++.|.+.|.|+|+.+... ...+|.+..=+..||-|=+.+++
T Consensus 23 ~~Gdl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~-----~~~gY~~~dy~~vd~~~Gt~~df 78 (539)
T TIGR02456 23 GIGDFPGLTSKLDYLKWLGVDALWLLPFFQSPL-----RDDGYDVSDYRAILPEFGTIDDF 78 (539)
T ss_pred CccCHHHHHHhHHHHHHCCCCEEEECCCcCCCC-----CCCCCCcccccccChhhCCHHHH
Confidence 789999999999999999999999999987532 12488888878888877555443
No 84
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=70.53 E-value=12 Score=33.40 Aligned_cols=62 Identities=18% Similarity=0.269 Sum_probs=42.4
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceecc-ccCCCCCccEEEEEE--cCCCceEEEEEEEEeCCC
Q 002027 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLS-PVHQDDELIWSGSIA--VPIGFSCEYSYYVVDDRK 93 (978)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~-~~~~~~~~~W~~~V~--lp~~~~~eYKYvv~d~~g 93 (978)
-.++|+|-+++ -++|.|++.... +|+ ...++|+ ..+++ +|+++|. ++. ....|+|.|...+|
T Consensus 11 ~~~~F~vwaP~--A~~V~l~~~~~~--~~~-~~~~~m~~~~~~G---~w~~~~~~~~~~-g~~~Y~y~i~~~~g 75 (85)
T PF02922_consen 11 GGVTFRVWAPN--AKSVELVLYFNG--SWP-AEEYPMTRKDDDG---VWEVTVPGDLPP-GGYYYKYRIDGDDG 75 (85)
T ss_dssp TEEEEEEE-TT--ESEEEEEEETTT--SSE-EEEEEEEEECTTT---EEEEEEEGCGTT-TT-EEEEEEEETTT
T ss_pred CEEEEEEECCC--CCEEEEEEEeee--cCC-CceEEeeecCCCC---EEEEEEcCCcCC-CCEEEEEEEEeCCC
Confidence 47888887653 368999988766 565 4588999 45554 4999998 332 24899999976544
No 85
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=64.16 E-value=22 Score=45.47 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=26.4
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEcCCCC
Q 002027 292 VGEFLDLKLLVDWAVESGFHLVQLLPIND 320 (978)
Q Consensus 292 IGdf~dl~~~~d~~~~~G~~~~QilPl~~ 320 (978)
-|+|.++.+.++.+++.|.+.|.++|+..
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~ 40 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILT 40 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCcc
Confidence 36899999999999999999999999864
No 86
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=63.71 E-value=23 Score=43.40 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHcCCeEeeccccc
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIG 497 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpig 497 (978)
.+++++.+.|+++||+|+-|+.+-
T Consensus 76 ~df~~Lv~~ah~~Gi~vilD~V~N 99 (539)
T TIGR02456 76 DDFKDFVDEAHARGMRVIIDLVLN 99 (539)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccC
Confidence 458899999999999999999874
No 87
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=62.92 E-value=6 Score=43.29 Aligned_cols=95 Identities=19% Similarity=0.337 Sum_probs=48.3
Q ss_pred HHHHHHHHcCCeEeeccccc-cCCCchh---hcc-----CcccccccCcccCCCCCCC--cCCCCCC-------------
Q 002027 478 EAAEYARKKGVVLKGDLPIG-VDRNSVD---TWV-----YPNLFRMNTSTGAPPDYFD--KNGQNWG------------- 533 (978)
Q Consensus 478 ~~~~yA~~~gI~L~gDLpig-v~~dSaD---vWa-----~p~lF~~d~~aGaPPD~Fs--~~GQnWG------------- 533 (978)
++.+.|+++||.|+-|+.+- ++.++.- .+. +++.|......+.||-.+. ..+.+|.
T Consensus 56 ~Lv~~~h~~gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (316)
T PF00128_consen 56 ELVDAAHKRGIKVILDVVPNHTSDDHPWFQDSLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSD 135 (316)
T ss_dssp HHHHHHHHTTCEEEEEEETSEEETTSHHHHHHHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTT
T ss_pred hhhhccccccceEEEeeeccccccccccccccccccccccccceeecccccccccccccccccccccccccccccccccc
Confidence 04567899999999999984 3333321 112 2333432222355554332 2233332
Q ss_pred CCCCCHHHHHHhhhHHHHHHHHHH-hccCCEEEeccccccce
Q 002027 534 FPTYNWEEMSKDNYAWWRARLTQM-SKYFTAYRIDHILGFFR 574 (978)
Q Consensus 534 ~P~ynw~~l~~~gy~ww~~Rlr~~-~~~~dalRIDH~~GffR 574 (978)
.|-.|++.= .--...++-+++- ..++|.+|||++..+-.
T Consensus 136 ~~dln~~n~--~v~~~i~~~~~~w~~~giDGfR~D~~~~~~~ 175 (316)
T PF00128_consen 136 LPDLNYENP--EVREYIIDVLKFWIEEGIDGFRLDAAKHIPK 175 (316)
T ss_dssp SEEBETTSH--HHHHHHHHHHHHHHHTTESEEEETTGGGSSH
T ss_pred cchhhhhhh--hhhhhhcccccchhhceEeEEEEccccccch
Confidence 355554421 1112233333322 23489999999987765
No 88
>PLN02361 alpha-amylase
Probab=62.76 E-value=22 Score=41.95 Aligned_cols=43 Identities=23% Similarity=0.238 Sum_probs=32.5
Q ss_pred ceEEeeecCccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCC
Q 002027 274 GAGVAVPMFSVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPIN 319 (978)
Q Consensus 274 ~~Gv~~~l~SLrs~~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~ 319 (978)
+..|++|-|-=.|... .-+..+.+=++.++++|.+.|.|.|+.
T Consensus 10 ~~~v~lQ~F~W~~~~~---~~w~~i~~kl~~l~~lG~t~iwl~P~~ 52 (401)
T PLN02361 10 GREILLQAFNWESHKH---DWWRNLEGKVPDLAKSGFTSAWLPPPS 52 (401)
T ss_pred CCcEEEEEEeccCCcc---HHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 3577888886666431 134678888999999999999999975
No 89
>PLN03244 alpha-amylase; Provisional
Probab=62.72 E-value=15 Score=46.61 Aligned_cols=87 Identities=17% Similarity=0.394 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCCCCCCCcC----CCCCCCCCCCHH---HH--H
Q 002027 473 HIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKN----GQNWGFPTYNWE---EM--S 543 (978)
Q Consensus 473 ~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~~----GQnWG~P~ynw~---~l--~ 543 (978)
-..|+++.+.|+++||+++-|+-. ++-+.|.......| -|.|..+|... -..||...+|.. .. -
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~--NH~~~d~~~GL~~f-----DGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FL 512 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLF-----DGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFL 512 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecC--ccCCCccccchhhc-----CCCccceeccCCCCccCCCCCceecCCCHHHHHHH
Confidence 357999999999999999999765 44444432222333 23443455432 236887666543 22 1
Q ss_pred HhhhHHHHHHHHHHhccCCEEEeccccc
Q 002027 544 KDNYAWWRARLTQMSKYFTAYRIDHILG 571 (978)
Q Consensus 544 ~~gy~ww~~Rlr~~~~~~dalRIDH~~G 571 (978)
-+.-.+|.+-.. +|.+|+|.|..
T Consensus 513 Lsna~yWleEyh-----IDGFRfDaVtS 535 (872)
T PLN03244 513 ISNLNWWITEYQ-----IDGFQFHSLAS 535 (872)
T ss_pred HHHHHHHHHHhC-----cCcceeecchh
Confidence 244555655443 88999998843
No 90
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=58.74 E-value=28 Score=41.95 Aligned_cols=92 Identities=15% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhhc------------------------cCcccccccCcccCC--------
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTW------------------------VYPNLFRMNTSTGAP-------- 521 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvW------------------------a~p~lF~~d~~aGaP-------- 521 (978)
..|+++.+.|+++||+||-|+-+ ++-|.+.+ ..-..|......|+.
T Consensus 81 ~dl~~Li~~~H~~Gi~vi~D~V~--NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (479)
T PRK09441 81 EELLNAIDALHENGIKVYADVVL--NHKAGADEKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWY 158 (479)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--ccccCCCcceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCc
Q ss_pred ---CCCC------------CcCCCCCC--------------CCCCCHH-----HHHHhhhHHHHHHHHHHhccCCEEEec
Q 002027 522 ---PDYF------------DKNGQNWG--------------FPTYNWE-----EMSKDNYAWWRARLTQMSKYFTAYRID 567 (978)
Q Consensus 522 ---PD~F------------s~~GQnWG--------------~P~ynw~-----~l~~~gy~ww~~Rlr~~~~~~dalRID 567 (978)
|+.| ...++.|. +|-.|.+ ..-.+-..||++.+. +|.+|||
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~g-----iDGfRlD 233 (479)
T PRK09441 159 HFSGTDYDENPDESGIFKIVGDGKGWDDQVDDENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTG-----FDGFRLD 233 (479)
T ss_pred CCCCcccccccCcCceEEecCCCCCCccccccccCCcccccccccccCCHHHHHHHHHHHHHHHHhcC-----CCEEEEh
Q ss_pred ccccc
Q 002027 568 HILGF 572 (978)
Q Consensus 568 H~~Gf 572 (978)
.+..+
T Consensus 234 avk~v 238 (479)
T PRK09441 234 AVKHI 238 (479)
T ss_pred hhcCC
No 91
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=58.71 E-value=21 Score=45.39 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCCCCCCCcCCC----CCCCCCCCHHHHHHhhhHH
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQ----NWGFPTYNWEEMSKDNYAW 549 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~~GQ----nWG~P~ynw~~l~~~gy~w 549 (978)
..++++.+.|+++||+++-|+-.. +-|.+...--..| | |.++.+|..... .||...+|-..-+ --+.
T Consensus 300 ~dlk~LVd~aH~~GI~VilDvV~n--H~~~~~~~gl~~f--D---g~~~~Yf~~~~~g~~~~w~~~~~N~~~~e--Vr~f 370 (758)
T PLN02447 300 EDLKYLIDKAHSLGLRVLMDVVHS--HASKNTLDGLNGF--D---GTDGSYFHSGPRGYHWLWDSRLFNYGNWE--VLRF 370 (758)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccc--ccccccccccccc--C---CCCccccccCCCCCcCcCCCceecCCCHH--HHHH
Confidence 358889999999999999998763 2222211001122 2 556666654332 3776666533211 1123
Q ss_pred HHHHHHHHhc--cCCEEEecccccc
Q 002027 550 WRARLTQMSK--YFTAYRIDHILGF 572 (978)
Q Consensus 550 w~~Rlr~~~~--~~dalRIDH~~Gf 572 (978)
.++-+++-.+ .+|.+|+|.+--+
T Consensus 371 Ll~~~~~Wl~ey~IDGfRfDaV~sm 395 (758)
T PLN02447 371 LLSNLRWWLEEYKFDGFRFDGVTSM 395 (758)
T ss_pred HHHHHHHHHHHhCcccccccchhhh
Confidence 4444444333 4899999977643
No 92
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=58.65 E-value=25 Score=33.97 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=44.0
Q ss_pred CCceEEEEEEEecccCCCCEEEE-ecCCcccCCCCccccccccc----cCCCcEEEEEeccCCCCceeeeEEEECCCCCe
Q 002027 164 EDSVLVRFKICIPNIEEDASVYV-IGSTSMLGQWKLQNGLKLSY----AGESVWEADCVIQRGDFPIKYKYCKSGKTGNI 238 (978)
Q Consensus 164 ~~~~~V~F~v~~~~~~~Gq~v~I-vGs~~eLG~W~~~~av~L~~----~~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v 238 (978)
.+++.|+|++.... -++|.| .|+--..+.....+-+.|.. .....|+++|.++ .. .+.|.|.+.+ +|..
T Consensus 20 ~~~l~IRLRt~k~D---v~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~-~~-r~~Y~F~l~~-~~~~ 93 (120)
T PF02903_consen 20 GDTLHIRLRTAKND---VEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLP-EK-RLRYYFELED-GGET 93 (120)
T ss_dssp TTEEEEEEEEETTT----SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-T-TS-EEEEEEEEEE-TTEE
T ss_pred CCEEEEEEEecCCC---CCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECC-CC-eEEEEEEEEe-CCEE
Confidence 34566666665433 234554 56666554444445566754 3568899999998 33 6999999988 5554
Q ss_pred eE
Q 002027 239 SL 240 (978)
Q Consensus 239 ~W 240 (978)
.|
T Consensus 94 ~~ 95 (120)
T PF02903_consen 94 YY 95 (120)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 93
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=58.40 E-value=26 Score=43.66 Aligned_cols=87 Identities=15% Similarity=0.191 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCC----CCCCCcCCCCCCCCCCCHHHHHHhhhHH
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAP----PDYFDKNGQNWGFPTYNWEEMSKDNYAW 549 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaP----PD~Fs~~GQnWG~P~ynw~~l~~~gy~w 549 (978)
..++++.+.|+++||+++-|+.+ ++-+.|.++-. .|. |-| +|........||.+.+|...- .--+.
T Consensus 206 ~dlk~lV~~~H~~Gi~VilD~V~--NH~~~~~~~~~-~~~-----~~~~y~~~~~~~~~~~~w~~~~~~~~~~--~Vr~~ 275 (613)
T TIGR01515 206 DDFMYFVDACHQAGIGVILDWVP--GHFPKDDHGLA-EFD-----GTPLYEHKDPRDGEHWDWGTLIFDYGRP--EVRNF 275 (613)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cCcCCccchhh-ccC-----CCcceeccCCccCcCCCCCCceecCCCH--HHHHH
Confidence 36899999999999999999886 44444433211 121 111 111122235689887776321 11233
Q ss_pred HHHHHHHHhc--cCCEEEecccc
Q 002027 550 WRARLTQMSK--YFTAYRIDHIL 570 (978)
Q Consensus 550 w~~Rlr~~~~--~~dalRIDH~~ 570 (978)
.++-+++-.+ ..|.+|+|.+-
T Consensus 276 l~~~~~~W~~ey~iDG~R~D~v~ 298 (613)
T TIGR01515 276 LVANALYWAEFYHIDGLRVDAVA 298 (613)
T ss_pred HHHHHHHHHHHhCCcEEEEcCHH
Confidence 4444444433 47899999754
No 94
>PRK12313 glycogen branching enzyme; Provisional
Probab=56.80 E-value=28 Score=43.46 Aligned_cols=91 Identities=10% Similarity=0.057 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHHhhhHHHHHH
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSKDNYAWWRAR 553 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~R 553 (978)
..++++.+.|+++||+++-|+.+ ++-|.|-|.. ..|.-...-. -+|.-...-..||.+.+|+..-+-. +..++-
T Consensus 220 ~d~k~lv~~~H~~Gi~VilD~V~--nH~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~w~~~~~n~~~~~vr--~~l~~~ 293 (633)
T PRK12313 220 EDFMYLVDALHQNGIGVILDWVP--GHFPKDDDGL-AYFDGTPLYE-YQDPRRAENPDWGALNFDLGKNEVR--SFLISS 293 (633)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC--CCCCCCcccc-cccCCCccee-ecCCCCCcCCCCCCcccCCCCHHHH--HHHHHH
Confidence 35889999999999999999886 4555453321 1221100000 0111111122688888877432211 223344
Q ss_pred HHHHhc--cCCEEEecccc
Q 002027 554 LTQMSK--YFTAYRIDHIL 570 (978)
Q Consensus 554 lr~~~~--~~dalRIDH~~ 570 (978)
+++-.+ ..|.+|+|.+-
T Consensus 294 ~~~W~~~~~iDG~R~D~~~ 312 (633)
T PRK12313 294 ALFWLDEYHLDGLRVDAVS 312 (633)
T ss_pred HHHHHHHhCCcEEEEcChh
Confidence 443333 48899999664
No 95
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=56.50 E-value=11 Score=47.41 Aligned_cols=57 Identities=28% Similarity=0.439 Sum_probs=41.9
Q ss_pred cCHHHHHHH--HHHHHHcCCCEEEEcCCCCCCCCCCCCC------CCCCCccCccccCccccChhh
Q 002027 293 GEFLDLKLL--VDWAVESGFHLVQLLPINDTSVNRMWWD------SYPYSSLSVFALHPLYLRVQA 350 (978)
Q Consensus 293 Gdf~dl~~~--~d~~~~~G~~~~QilPl~~t~~~~~~~d------~SPYs~~S~falNPlyI~l~~ 350 (978)
|.|..|.+. ++++++.|.+.|||||+++-..... .+ .-=|+|..-||+.|-|.+=..
T Consensus 195 GTy~gl~~~~~i~yLk~LGvtaVeLLPV~~~~~~~~-l~~~gl~n~WGYdP~~fFAp~~~Yss~p~ 259 (697)
T COG1523 195 GTYLGLAEPVIIDYLKDLGVTAVELLPVFDFYDEPH-LDKSGLNNNWGYDPLNFFAPEGRYASNPE 259 (697)
T ss_pred cceehhccccHHHHHHHhCCceEEEecceEEecccc-ccccccccccCCCcccccCCCccccCCCC
Confidence 567666665 9999999999999999997432110 00 114899999999999986654
No 96
>PLN02877 alpha-amylase/limit dextrinase
Probab=55.34 E-value=1.2e+02 Score=39.76 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=38.9
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEE
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKS 232 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~ 232 (978)
.++|+|-+|+ -++|.|+--... +.+.+...++|. .....|++.+.-... ...|+|.+.
T Consensus 223 g~~F~VWAPt---A~~V~L~lyd~~-~~~~~~~~~~m~-~~~GVWsv~v~~~~~--G~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPT---AQAVSLCLYDDP-RGKEPLEIVQLK-ESNGVWSVEGPKSWE--GCYYVYEVS 280 (970)
T ss_pred CEEEEEECCC---CCEEEEEEecCC-CCccceEEeccc-CCCCEEEEEeccCCC--CCeeEEEEe
Confidence 5999999998 778888742111 123344445777 567899999874423 357999885
No 97
>PLN02316 synthase/transferase
Probab=54.40 E-value=1.1e+02 Score=40.38 Aligned_cols=88 Identities=10% Similarity=0.253 Sum_probs=55.2
Q ss_pred cCCCCceEEEEEEEecccCCCCEEEEecCCcccCCCCccccc--cc---cccCCCcEEEEEeccCCCCceeeeEEEECC-
Q 002027 161 LEQEDSVLVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGL--KL---SYAGESVWEADCVIQRGDFPIKYKYCKSGK- 234 (978)
Q Consensus 161 ~~~~~~~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av--~L---~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~- 234 (978)
++..+.++|.+.-....+.-.+.|+|.|+.- +|.-...+ +| ...++..|.++|.||..-. ---||..|.
T Consensus 325 ~~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N---~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~--~mDfVFsdg~ 399 (1036)
T PLN02316 325 FKAGDTVKLYYNRSSGPLAHSTEIWIHGGYN---NWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERAL--VLDWVFADGP 399 (1036)
T ss_pred cCCCCEEEEEECCCCCCCCCCCcEEEEEeEc---CCCCCCcccceeecccCCCCCEEEEEEecCCCce--EEEEEEecCC
Confidence 4556667777776666666678899988764 56643322 22 2235679999999995433 444555553
Q ss_pred -CCCeeEeeCCCeeEEecCC
Q 002027 235 -TGNISLETGANRNLNVDFS 253 (978)
Q Consensus 235 -~g~v~WE~g~NR~~~~p~~ 253 (978)
++...|.+..+.=+.+|..
T Consensus 400 ~~~~~~yDNn~~~Dyh~~v~ 419 (1036)
T PLN02316 400 PGNARNYDNNGRQDFHAIVP 419 (1036)
T ss_pred cccccccccCCCcceeeecC
Confidence 2334788876665665543
No 98
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=54.28 E-value=36 Score=41.77 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCeEeecccc
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPI 496 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpi 496 (978)
.+++++.+.|+++||.++-|+.+
T Consensus 75 ~~~~~lv~~ah~~gi~vilD~v~ 97 (543)
T TIGR02403 75 ADFEELVSEAKKRNIKIMLDMVF 97 (543)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc
Confidence 46899999999999999999886
No 99
>PRK09505 malS alpha-amylase; Reviewed
Probab=53.74 E-value=31 Score=43.54 Aligned_cols=89 Identities=16% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhh-------ccCcccccccCcccCCCCCCCc----CCCCC----------
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDT-------WVYPNLFRMNTSTGAPPDYFDK----NGQNW---------- 532 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDv-------Wa~p~lF~~d~~aGaPPD~Fs~----~GQnW---------- 532 (978)
..|+++.+.|+++||.|+-|+.+ ++-|.+. |...=++..+......|..|+. .+|||
T Consensus 292 ~dfk~Lv~~aH~~Gi~VilD~V~--NH~~~~~~~d~~~~~f~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 369 (683)
T PRK09505 292 ADLRTLVDEAHQRGIRILFDVVM--NHTGYATLADMQEFQFGALYLSGDENKKTLGERWSDWQPAAGQNWHSFNDYINFS 369 (683)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--CCCcccccccccccchhhhhhhccccccccCcccccccccccccccccccccccC
Q ss_pred ----------------------------------CCCCCCHH-------------------------HHHH---hhhHHH
Q 002027 533 ----------------------------------GFPTYNWE-------------------------EMSK---DNYAWW 550 (978)
Q Consensus 533 ----------------------------------G~P~ynw~-------------------------~l~~---~gy~ww 550 (978)
++|-+|-+ .+++ +-..||
T Consensus 370 ~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~~~~p~~~~~~~~n~~Vr~yL~~~ik~W 449 (683)
T PRK09505 370 DSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFYANKPDTRAKAIDGYTPRDYLTHWLSQW 449 (683)
T ss_pred CccccccccccccccccccccccccccccccccccCCcccccCccccccchhhhcCcccccccccCHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhccCCEEEeccc
Q 002027 551 RARLTQMSKYFTAYRIDHI 569 (978)
Q Consensus 551 ~~Rlr~~~~~~dalRIDH~ 569 (978)
+++.. .|.+|||.+
T Consensus 450 v~e~G-----IDGfRlDaa 463 (683)
T PRK09505 450 VRDYG-----IDGFRVDTA 463 (683)
T ss_pred HHhcC-----CCEEEEech
No 100
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=53.30 E-value=16 Score=48.97 Aligned_cols=56 Identities=16% Similarity=0.332 Sum_probs=48.6
Q ss_pred ccCCCCCCcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCcccc
Q 002027 283 SVRSEADLGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYL 346 (978)
Q Consensus 283 SLrs~~~~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI 346 (978)
++=|+. +|.|.+-.+-++.+++.|..+|-+.||++.+.. .||||-..=+..||.+-
T Consensus 122 TvlsK~---mG~~~~w~~~L~~ik~lGyN~IhftPI~~~G~S-----nS~Ysi~Dyl~idP~~~ 177 (1464)
T TIGR01531 122 TVLAKL---LGPLSEWEPRLRVAKEKGYNMIHFTPLQELGGS-----NSCYSLYDQLQLNQHFK 177 (1464)
T ss_pred eehhhh---cCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCC-----CCCccccchhhcChhhc
Confidence 444554 999998889999999999999999999998853 38999999999999885
No 101
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=52.93 E-value=44 Score=31.15 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=41.2
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCC---ccccccccccCCCcEEEEEeccCCCCceeeeEEEECC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWK---LQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSGK 234 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~---~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~~ 234 (978)
.++|+|-+|+ .++|.|+.-. +|+ +...++|....+..|.+.|.-...+ ..|+|.+...
T Consensus 9 ~~~F~vwAP~---A~~V~L~l~~----~~~~~~~~~~~~m~~~~~gvw~~~v~~~~~g--~~Y~y~i~~~ 69 (100)
T cd02860 9 KTTFRLWAPT---AQSVKLLLYD----KDDQDKVLETVQMKRGENGVWSVTLDGDLEG--YYYLYEVKVY 69 (100)
T ss_pred CEEEEEECCC---CcEEEEEEEc----CCCCCCcceeEeeecCCCCEEEEEeCCccCC--cEEEEEEEEe
Confidence 3899999987 7788888632 343 2334689888889999988633233 4799998654
No 102
>PRK14706 glycogen branching enzyme; Provisional
Probab=48.43 E-value=53 Score=41.20 Aligned_cols=86 Identities=14% Similarity=0.198 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCC----CCCCCcCCCCCCCCCCCH---HHHH--H
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAP----PDYFDKNGQNWGFPTYNW---EEMS--K 544 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaP----PD~Fs~~GQnWG~P~ynw---~~l~--~ 544 (978)
..++++.+.|+++||+++-|+.+ ++-+.|-+ .++..| |.| .|...-.-.+||...+|- +..+ -
T Consensus 217 ~~~~~lv~~~H~~gi~VilD~v~--nH~~~~~~---~l~~~d---g~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~ 288 (639)
T PRK14706 217 EDFKYLVNHLHGLGIGVILDWVP--GHFPTDES---GLAHFD---GGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLI 288 (639)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cccCcchh---hhhccC---CCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHH
Confidence 56888999999999999999876 33333322 222222 222 111111124688766553 2221 1
Q ss_pred hhhHHHHHHHHHHhccCCEEEecccccc
Q 002027 545 DNYAWWRARLTQMSKYFTAYRIDHILGF 572 (978)
Q Consensus 545 ~gy~ww~~Rlr~~~~~~dalRIDH~~Gf 572 (978)
+.-.+|++-+ ..|.+|+|.+-.+
T Consensus 289 ~~~~~W~~e~-----~iDG~R~Dav~~~ 311 (639)
T PRK14706 289 GSALKWLQDF-----HVDGLRVDAVASM 311 (639)
T ss_pred HHHHHHHHHh-----CCCeEEEeeehhe
Confidence 3344554433 4899999976653
No 103
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=47.34 E-value=48 Score=40.70 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHcCCeEeeccccc-cCCCchhhccCcccccccCcccCCCCCCCc-CCCCCCCCCCCHHHH-HHhhhHHH
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIG-VDRNSVDTWVYPNLFRMNTSTGAPPDYFDK-NGQNWGFPTYNWEEM-SKDNYAWW 550 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpig-v~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~-~GQnWG~P~ynw~~l-~~~gy~ww 550 (978)
.+++++.+.|+++||+++-|+.+. +++++. +. ..| + | +|.. ..-.||. .+|.+.- +..--+..
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~--~~--~~~-------~-~-y~~~~~~~~wg~-~~n~~~~~~~~vr~~i 225 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYNHFGPEGN--YL--PRY-------A-P-YFTDRYSTPWGA-AINFDGPGSDEVRRYI 225 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCCCCCccc--cc--ccc-------C-c-cccCCCCCCCCC-ccccCCCcHHHHHHHH
Confidence 478999999999999999999872 222221 10 011 1 2 5543 2446774 3555421 00111233
Q ss_pred HHHHHHHhc--cCCEEEecccccc
Q 002027 551 RARLTQMSK--YFTAYRIDHILGF 572 (978)
Q Consensus 551 ~~Rlr~~~~--~~dalRIDH~~Gf 572 (978)
++-+++-.+ ..|.+|+|.+-.+
T Consensus 226 ~~~~~~W~~e~~iDGfR~D~~~~~ 249 (542)
T TIGR02402 226 LDNALYWLREYHFDGLRLDAVHAI 249 (542)
T ss_pred HHHHHHHHHHhCCcEEEEeCHHHh
Confidence 344443332 4789999965443
No 104
>PRK05402 glycogen branching enzyme; Provisional
Probab=46.57 E-value=49 Score=42.14 Aligned_cols=66 Identities=15% Similarity=0.152 Sum_probs=47.3
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCcccccccccc-CCCcEEEEEeccCCCCceeeeEEEECCCCCeeEeeCCCe
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYA-GESVWEADCVIQRGDFPIKYKYCKSGKTGNISLETGANR 246 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~-~~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~WE~g~NR 246 (978)
-++|+|-+|. -++|.|+|+-.. .+..+|... +...|++-|. . ...-.|||.+.+ +|....-..+..
T Consensus 29 g~~f~vwaP~---A~~V~vvgdfn~------~~~~~m~~~~~~G~w~~~ip-~--~~g~~YKy~i~~-~g~~~~k~DPya 95 (726)
T PRK05402 29 GLVVRALLPG---AEEVWVILPGGG------RKLAELERLHPRGLFAGVLP-R--KGPFDYRLRVTW-GGGEQLIDDPYR 95 (726)
T ss_pred cEEEEEECCC---CeEEEEEeecCC------CccccceEcCCCceEEEEec-C--CCCCCeEEEEEe-CCceeEeccccc
Confidence 5899999988 789999997662 344567653 5678998776 3 234469999998 777555555544
No 105
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=44.69 E-value=1.1e+02 Score=28.60 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=36.8
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCC-CCccEEEEEEcCCCceEEEEEEEEe
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQD-DELIWSGSIAVPIGFSCEYSYYVVD 90 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~-~~~~W~~~V~lp~~~~~eYKYvv~d 90 (978)
+|+|+|+.....=++|.|.-..+.. .+..+-++|...... ....|+++|.++. ..+.|.|.+.+
T Consensus 17 ~v~irlr~~~~~v~~v~l~~~~~~~--~~~~~~~~M~~~~~~~~~~~~~~~i~~~~-~~~~Y~F~l~~ 81 (116)
T cd02857 17 TLHIRLRTKKGDVAKVYLRYGDPYD--KGEEEEVPMRKDGSDELFDYWEATLPPPT-GRLRYYFELVD 81 (116)
T ss_pred EEEEEEEecCCCccEEEEEEECCCC--CCCceEEEEEEeeeCCceeEEEEEEecCC-cEEEEEEEEEc
Confidence 3444444332233566664433321 112347788765432 2357999998775 78899999864
No 106
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=44.46 E-value=70 Score=28.89 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=38.6
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEE
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKS 232 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~ 232 (978)
.++|+|-+|. -++|.|+..- + +.++|.......|++.+.-. ....|+|.+.
T Consensus 9 ~~~F~vwAP~---A~~V~l~l~~-----~---~~~~m~~~~~G~W~~~v~~~---~g~~Y~y~v~ 59 (85)
T cd02853 9 GTRFRLWAPD---AKRVTLRLDD-----G---EEIPMQRDGDGWFEAEVPGA---AGTRYRYRLD 59 (85)
T ss_pred CEEEEEeCCC---CCEEEEEecC-----C---CcccCccCCCcEEEEEeCCC---CCCeEEEEEC
Confidence 4899999998 7889998642 2 34678877888999987643 3458999885
No 107
>PLN00196 alpha-amylase; Provisional
Probab=44.32 E-value=63 Score=38.56 Aligned_cols=91 Identities=22% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcCCeEeeccccccCCCchhhccCccc---ccccCcccCCCCCCCcCCCC----CCCCCCCH------
Q 002027 473 HIQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNL---FRMNTSTGAPPDYFDKNGQN----WGFPTYNW------ 539 (978)
Q Consensus 473 ~~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~l---F~~d~~aGaPPD~Fs~~GQn----WG~P~ynw------ 539 (978)
..+++++.+.|+++||++|.|+-+ ++-|+|-...+.. |.-+...+ +.+-|.-.+.. |....-+.
T Consensus 91 ~~elk~Lv~~aH~~GIkVilDvV~--NH~~~~~~~~~~~y~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (428)
T PLN00196 91 EAQLKSLIEAFHGKGVQVIADIVI--NHRTAEHKDGRGIYCLFEGGTPDS-RLDWGPHMICRDDTQYSDGTGNLDTGADF 167 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECc--cCcccccccCCCceEECCCCCCCC-ccccccccCCCCcccccCCCCceeCCCCC
Q ss_pred --------------HHHHHhhhHHHHHHHHHHhccCCEEEecccccc
Q 002027 540 --------------EEMSKDNYAWWRARLTQMSKYFTAYRIDHILGF 572 (978)
Q Consensus 540 --------------~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~Gf 572 (978)
+.|.+-. .||++.+. +|.+|+|=+.++
T Consensus 168 ~~lpDLn~~np~V~~~l~~~~-~wl~~~~G-----iDG~RlD~ak~~ 208 (428)
T PLN00196 168 AAAPDIDHLNKRVQRELIGWL-LWLKSDIG-----FDAWRLDFAKGY 208 (428)
T ss_pred CCCCccCCCCHHHHHHHHHHH-HHHhhCCC-----CCEEEeehhhhC
No 108
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=44.21 E-value=33 Score=40.79 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=44.3
Q ss_pred CcccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCCCCCCCCCCccCccccCccccChhhh
Q 002027 290 LGVGEFLDLKLLVDWAVESGFHLVQLLPINDTSVNRMWWDSYPYSSLSVFALHPLYLRVQAL 351 (978)
Q Consensus 290 ~GIGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~~~~~d~SPYs~~S~falNPlyI~l~~l 351 (978)
.|+|||..+.+-.|.++..|.+.|-|+|+...-.. ...|....-...||.|-..+++
T Consensus 23 ~G~Gdl~Gi~~~LdYl~~LGv~aiwl~Pi~~s~~~-----~~gY~~~Dy~~id~~~Gt~~d~ 79 (505)
T COG0366 23 DGGGDLKGITEKLDYLKELGVDAIWLSPIFESPQA-----DHGYDVSDYTKVDPHFGTEEDF 79 (505)
T ss_pred CCcccHHhHHHhhhHHHHhCCCEEEeCCCCCCCcc-----CCCccccchhhcCcccCCHHHH
Confidence 57999999999999999999999999999886311 1367666666777766666554
No 109
>PRK12568 glycogen branching enzyme; Provisional
Probab=42.40 E-value=56 Score=41.55 Aligned_cols=89 Identities=12% Similarity=0.140 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCCCCCCCcCCCCCCCCCCCHHHHHH-----hhhH
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDKNGQNWGFPTYNWEEMSK-----DNYA 548 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~~GQnWG~P~ynw~~l~~-----~gy~ 548 (978)
..++++.+.|+++||+++-|+.+ ++-+.|.+.. ..|.-...-- =+|.-....++||.-.||+..-+- +.-.
T Consensus 319 ~dfk~lV~~~H~~Gi~VIlD~V~--nH~~~d~~~l-~~fdg~~~Ye-~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~ 394 (730)
T PRK12568 319 DGFAQFVDACHRAGIGVILDWVS--AHFPDDAHGL-AQFDGAALYE-HADPREGMHRDWNTLIYNYGRPEVTAYLLGSAL 394 (730)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--ccCCcccccc-ccCCCccccc-cCCCcCCccCCCCCeecccCCHHHHHHHHHHHH
Confidence 46889999999999999999886 3333332211 1121000000 011111123578765566654322 2335
Q ss_pred HHHHHHHHHhccCCEEEeccccc
Q 002027 549 WWRARLTQMSKYFTAYRIDHILG 571 (978)
Q Consensus 549 ww~~Rlr~~~~~~dalRIDH~~G 571 (978)
+|.+.. ..|.+|+|.+-.
T Consensus 395 ~Wl~ey-----hIDG~R~DAva~ 412 (730)
T PRK12568 395 EWIEHY-----HLDGLRVDAVAS 412 (730)
T ss_pred HHHHHh-----CceEEEEcCHhH
Confidence 555443 378999997744
No 110
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=42.08 E-value=62 Score=39.89 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHcCCeEeecccc
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPI 496 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpi 496 (978)
..++++.+.|+++||+++.|+.+
T Consensus 81 ~d~~~lv~~~h~~gi~vilD~V~ 103 (551)
T PRK10933 81 DDFDELVAQAKSRGIRIILDMVF 103 (551)
T ss_pred HHHHHHHHHHHHCCCEEEEEECC
Confidence 45889999999999999999986
No 111
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=41.22 E-value=84 Score=29.47 Aligned_cols=56 Identities=14% Similarity=0.131 Sum_probs=39.2
Q ss_pred EEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEEC
Q 002027 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSG 233 (978)
Q Consensus 169 V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~ 233 (978)
++|+|-+|. .++|.|+.-.. +.....++|....+..|.+.+.=...+ ..|+|.+-.
T Consensus 11 ~~F~vwAP~---A~~V~L~l~~~----~~~~~~~~m~~~~~GvW~~~v~~~~~g--~~Y~y~i~g 66 (103)
T cd02856 11 CNFAVHSEN---ATRIELCLFDE----DGSETRLPLTEEYGGVWHGFLPGIKAG--QRYGFRVHG 66 (103)
T ss_pred eEEEEECCC---CCEEEEEEEeC----CCCEEEEEcccccCCEEEEEECCCCCC--CEEEEEECC
Confidence 889999987 78888887432 221234688877889999988522133 489999854
No 112
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=41.20 E-value=2.1e+02 Score=26.40 Aligned_cols=58 Identities=29% Similarity=0.414 Sum_probs=39.3
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccC-CCcEEEEEeccCCCCceeeeEEEECC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG-ESVWEADCVIQRGDFPIKYKYCKSGK 234 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~-~~~W~~~v~lp~~~~~~eYKyv~~~~ 234 (978)
.++|+|-+|. -++|.|+|+ .++|+.. ..+|.... ...|++.+.-...+ -.|+|.+...
T Consensus 22 ~~~frv~aP~---A~~V~l~~~---~~~~~~~-~~~m~~~~~~G~w~~~v~~~~~~--~~Y~~~v~~~ 80 (106)
T cd02855 22 GVRFAVWAPN---ARRVSVVGD---FNGWDGR-RHPMRRRGDSGVWELFIPGLGEG--ELYKYEILGA 80 (106)
T ss_pred CEEEEEECCC---CCEEEEEEE---CCCCCCc-ceecEECCCCCEEEEEECCCCCC--CEEEEEEECC
Confidence 4889999987 688999974 2467543 35787755 77899777522112 2599988654
No 113
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=40.06 E-value=31 Score=41.29 Aligned_cols=40 Identities=25% Similarity=0.569 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCCeEeec-cccccCCCchhhccCcccccccCcccCCCC
Q 002027 476 LSEAAEYARKKGVVLKGD-LPIGVDRNSVDTWVYPNLFRMNTSTGAPPD 523 (978)
Q Consensus 476 l~~~~~yA~~~gI~L~gD-Lpigv~~dSaDvWa~p~lF~~d~~aGaPPD 523 (978)
|+++++.|+++||-||-| +.-|+.+-| ..|++.. .|+.||
T Consensus 245 l~~l~~~~~~~gillI~DEVQtG~GRTG-~~fa~E~-------~gv~PD 285 (447)
T COG0160 245 LKALRKLCREHGILLIADEVQTGFGRTG-KMFAFEH-------FGVEPD 285 (447)
T ss_pred HHHHHHHHHHcCCEEEEeccccCCCccc-cchhhhh-------cCCCCC
Confidence 678999999999998888 999999999 7787654 555666
No 114
>PLN02960 alpha-amylase
Probab=38.40 E-value=65 Score=41.61 Aligned_cols=89 Identities=15% Similarity=0.266 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCCCCCCCc----CCCCCCCCCCCHHHHHHhhhHH
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPDYFDK----NGQNWGFPTYNWEEMSKDNYAW 549 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaPPD~Fs~----~GQnWG~P~ynw~~l~~~gy~w 549 (978)
..++++.+.|+++||+++-|+-. ++-+.|....-..| -|.+.-+|.. .-..||.+.+|-..- .=-+.
T Consensus 466 ~dfk~LVd~aH~~GI~VILDvV~--NH~~~d~~~~L~~F-----DG~~~~Yf~~~~~g~~~~WG~~~fNy~~~--eVr~f 536 (897)
T PLN02960 466 DDFKRLVDEAHGLGLLVFLDIVH--SYAAADEMVGLSLF-----DGSNDCYFHSGKRGHHKRWGTRMFKYGDH--EVLHF 536 (897)
T ss_pred HHHHHHHHHHHHCCCEEEEEecc--cccCCccccchhhc-----CCCccceeecCCCCccCCCCCcccCCCCH--HHHHH
Confidence 46889999999999999999764 33343421111122 1333334432 123599877664431 11123
Q ss_pred HHHHHHHHh--ccCCEEEeccccc
Q 002027 550 WRARLTQMS--KYFTAYRIDHILG 571 (978)
Q Consensus 550 w~~Rlr~~~--~~~dalRIDH~~G 571 (978)
.++-+++-. =++|.+|+|-+-.
T Consensus 537 Llsna~yWl~EyhIDGfR~DAV~s 560 (897)
T PLN02960 537 LLSNLNWWVTEYRVDGFQFHSLGS 560 (897)
T ss_pred HHHHHHHHHHHHCCCceeecccce
Confidence 333333322 1478899997654
No 115
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=37.22 E-value=1.2e+02 Score=28.14 Aligned_cols=57 Identities=21% Similarity=0.135 Sum_probs=37.4
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCC---CCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEEe
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWD---VKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVVD 90 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~---~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~d 90 (978)
.++|+|-+++ .++|.|+.-. +|+ +...++|+...++ +|++.|.-. .....|+|.+..
T Consensus 9 ~~~F~vwAP~--A~~V~L~l~~----~~~~~~~~~~~~m~~~~~g---vw~~~v~~~-~~g~~Y~y~i~~ 68 (100)
T cd02860 9 KTTFRLWAPT--AQSVKLLLYD----KDDQDKVLETVQMKRGENG---VWSVTLDGD-LEGYYYLYEVKV 68 (100)
T ss_pred CEEEEEECCC--CcEEEEEEEc----CCCCCCcceeEeeecCCCC---EEEEEeCCc-cCCcEEEEEEEE
Confidence 4789998775 4678887642 343 3346789875554 499888621 234579999964
No 116
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=36.07 E-value=84 Score=39.14 Aligned_cols=22 Identities=14% Similarity=0.226 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCeEeecccc
Q 002027 475 QLSEAAEYARKKGVVLKGDLPI 496 (978)
Q Consensus 475 Ql~~~~~yA~~~gI~L~gDLpi 496 (978)
.++++.+.|+++||++|-|+-+
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~ 251 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVY 251 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEc
Confidence 4788999999999999999987
No 117
>PLN02784 alpha-amylase
Probab=34.07 E-value=1.4e+02 Score=38.62 Aligned_cols=88 Identities=17% Similarity=0.359 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCeEeeccccccCCCchh---------------hccCcccccccCcccCCCCCCCcCCCCC------
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPIGVDRNSVD---------------TWVYPNLFRMNTSTGAPPDYFDKNGQNW------ 532 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpigv~~dSaD---------------vWa~p~lF~~d~~aGaPPD~Fs~~GQnW------ 532 (978)
.+|+++.+.|+++||+++.|+-+ ++-+++ -|.++.....+ ..|.-.|..|
T Consensus 568 ~ELk~LI~a~H~~GIkVIlDiVi--NH~ag~f~~~~g~~~~f~g~~dW~d~~i~~dd-------p~F~GrG~~~sgddf~ 638 (894)
T PLN02784 568 DELKDLVKSFHEVGIKVLGDAVL--NHRCAHFQNQNGVWNIFGGRLNWDDRAVVADD-------PHFQGRGNKSSGDNFH 638 (894)
T ss_pred HHHHHHHHHHHHCCCEEEEEECc--ccccccccCCCCcccccCCeecCCCCcccCCC-------cccCCcCCcCcccccC
Q ss_pred CCCCCCH--HHHHHhhhHHHHHHHHHHhccCCEEEecccccc
Q 002027 533 GFPTYNW--EEMSKDNYAWWRARLTQMSKYFTAYRIDHILGF 572 (978)
Q Consensus 533 G~P~ynw--~~l~~~gy~ww~~Rlr~~~~~~dalRIDH~~Gf 572 (978)
|.|-.|- ...+++=..|-+-.+...- ||.+|+|-+.||
T Consensus 639 ~lPDLDh~npeVR~eL~~WlkWL~~e~G--~DGfRLDaVKgf 678 (894)
T PLN02784 639 AAPNIDHSQDFVRKDLKEWLCWMRKEVG--YDGWRLDFVRGF 678 (894)
T ss_pred cCCcCCCCCHHHHHHHHHHHHHHHhccC--CCEEEEeccCCC
No 118
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=33.46 E-value=1.8e+02 Score=26.87 Aligned_cols=56 Identities=20% Similarity=0.307 Sum_probs=35.7
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccC-CCCCccEEEEEE-cCCCceEEEEEEEEe
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVH-QDDELIWSGSIA-VPIGFSCEYSYYVVD 90 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~-~~~~~~W~~~V~-lp~~~~~eYKYvv~d 90 (978)
.++|+|-.+.- ++|.|+++. ++|+.. ..+|...+ . .+|.+.+. ++.+. .|+|.+..
T Consensus 22 ~~~frv~aP~A--~~V~l~~~~---~~~~~~-~~~m~~~~~~---G~w~~~v~~~~~~~--~Y~~~v~~ 79 (106)
T cd02855 22 GVRFAVWAPNA--RRVSVVGDF---NGWDGR-RHPMRRRGDS---GVWELFIPGLGEGE--LYKYEILG 79 (106)
T ss_pred CEEEEEECCCC--CEEEEEEEC---CCCCCc-ceecEECCCC---CEEEEEECCCCCCC--EEEEEEEC
Confidence 47788876633 789999752 467543 56787654 3 34997775 22222 49998864
No 119
>PF00479 G6PD_N: Glucose-6-phosphate dehydrogenase, NAD binding domain; InterPro: IPR022674 Glucose-6-phosphate dehydrogenase (1.1.1.49 from EC) (G6PDH) is a ubiquitous protein, present in bacteria and all eukaryotic cell types []. The enzyme catalyses the the first step in the pentose pathway, i.e. the conversion of glucose-6-phosphate to gluconolactone 6-phosphate in the presence of NADP, producing NADPH. The ubiquitous expression of the enzyme gives it a major role in the production of NADPH for the many NADPH-mediated reductive processes in all cells []. Deficiency of G6PDH is a common genetic abnormality affecting millions of people worldwide. Many sequence variants, most caused by single point mutations, are known, exhibiting a wide variety of phenotypes []. This entry represents the NAD-binding domain of glucose-6-phosphate dehydrogenase.; GO: 0004345 glucose-6-phosphate dehydrogenase activity, 0050661 NADP binding, 0006006 glucose metabolic process, 0055114 oxidation-reduction process; PDB: 4EM5_C 4E9I_A 2DPG_A 1E77_A 1E7M_A 1H9B_A 1E7Y_A 1DPG_B 1H93_A 1H9A_A ....
Probab=31.79 E-value=33 Score=36.11 Aligned_cols=25 Identities=44% Similarity=0.687 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHhccCC---EEEeccccc
Q 002027 547 YAWWRARLTQMSKYFT---AYRIDHILG 571 (978)
Q Consensus 547 y~ww~~Rlr~~~~~~d---alRIDH~~G 571 (978)
.+=-++.=+...++|+ ++||||++|
T Consensus 150 l~SA~~Ln~~l~~~f~E~qIyRIDHYLG 177 (183)
T PF00479_consen 150 LESARELNDQLAEYFDEEQIYRIDHYLG 177 (183)
T ss_dssp HHHHHHHHHHHCTTS-GGGEEE--GGGG
T ss_pred HHHHHHHHHHHHHhCCHHHeeehhhhcc
Confidence 3334555566677776 799999998
No 120
>PRK03705 glycogen debranching enzyme; Provisional
Probab=31.46 E-value=1.2e+02 Score=38.28 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=38.3
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEE
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKS 232 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~ 232 (978)
.|.|+|-+|+ -++|.|+.-.. ++....++|....+..|++.|.=... ...|+|-+.
T Consensus 20 g~~F~vwAP~---A~~V~L~l~~~----~~~~~~~~m~~~~~gvW~~~v~~~~~--G~~Y~yrv~ 75 (658)
T PRK03705 20 GVNFTLFSAH---AERVELCVFDE----NGQEQRYDLPARSGDIWHGYLPGARP--GLRYGYRVH 75 (658)
T ss_pred CEEEEEECCC---CCEEEEEEEcC----CCCeeeEeeeeccCCEEEEEECCCCC--CCEEEEEEc
Confidence 3899999987 67788876321 22223567877778899998863323 347999885
No 121
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=31.43 E-value=25 Score=34.96 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=20.1
Q ss_pred CCCcEEecCCCCchhHHHHHhc
Q 002027 806 NYMTVCAPSCHDCSTLRAWWEE 827 (978)
Q Consensus 806 p~~sVa~tsTHD~~TlrgWW~~ 827 (978)
+..++|+||+||..||..|-..
T Consensus 87 ti~Amc~tg~~~~~sL~~WI~~ 108 (126)
T PF14784_consen 87 TIFAMCMTGTSDKDSLLSWIRG 108 (126)
T ss_pred eEEEEEeccCCCHHHHHHHHHH
Confidence 6889999999999999999864
No 122
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=27.68 E-value=1.5e+02 Score=39.77 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCeEeecccc
Q 002027 474 IQLSEAAEYARKKGVVLKGDLPI 496 (978)
Q Consensus 474 ~Ql~~~~~yA~~~gI~L~gDLpi 496 (978)
..++++.+.|+++||+++.|+-+
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVy 577 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVY 577 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEeccc
Confidence 36888999999999999999876
No 123
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=27.42 E-value=2.3e+02 Score=36.77 Aligned_cols=152 Identities=16% Similarity=0.238 Sum_probs=93.5
Q ss_pred eEEEEEEEecccCCCCEEEEecCCcccCC-CCccccccccccC------CCcEEEEEeccCCCCceeeeEEEECCCCCee
Q 002027 167 VLVRFKICIPNIEEDASVYVIGSTSMLGQ-WKLQNGLKLSYAG------ESVWEADCVIQRGDFPIKYKYCKSGKTGNIS 239 (978)
Q Consensus 167 ~~V~F~v~~~~~~~Gq~v~IvGs~~eLG~-W~~~~av~L~~~~------~~~W~~~v~lp~~~~~~eYKyv~~~~~g~v~ 239 (978)
-.|+|++-+ . .-|..|.|--|+|.=|| .+.++-..|.|.. .-.=.+.|.+..++ .+.|-|-+-+.+ .
T Consensus 29 ~~l~~~~~a-S-llgkkv~v~Tnyp~~gntf~r~kfr~l~w~~p~~~~~~~d~~~qln~~~sG-sf~yyf~ledne-k-- 102 (1521)
T KOG3625|consen 29 YELQFRLGA-S-LLGKKVTVYTNYPFPGNTFNREKFRSLDWENPTEREDDSDKYCQLNLQQSG-SFQYYFSLEDNE-K-- 102 (1521)
T ss_pred cEEEEeeCC-c-ccccceEEEecCCCCCcccchhhhhcccccCcccccccccceeeEEeccCc-cEEEEEEecCcc-c--
Confidence 568888876 3 56889999999999888 4544444454432 11124456665344 466655432221 1
Q ss_pred EeeCCCeeEEecCCCCCCeeEEeccccccCCCccceEEeeecCccCCCCCCc--ccCHHHHHHHHHHHHHcCCCEEEEcC
Q 002027 240 LETGANRNLNVDFSNNQPRYIFLSDGMMREMPWRGAGVAVPMFSVRSEADLG--VGEFLDLKLLVDWAVESGFHLVQLLP 317 (978)
Q Consensus 240 WE~g~NR~~~~p~~~~~~~~~~~~~~~~~~~~~R~~Gv~~~l~SLrs~~~~G--IGdf~dl~~~~d~~~~~G~~~~QilP 317 (978)
.|.-..+..| .+ .+- +.+=.+||-|++-+.=.- .|.|.+-..-...++++|..+|.+-|
T Consensus 103 --~g~~Yfvv~P------~L-~v~----------~~~k~lPLdsva~QtvlaK~LGpl~eWeprL~va~e~gYNmIHfTP 163 (1521)
T KOG3625|consen 103 --SGGGYFVVDP------IL-RVG----------ADNKVLPLDSVALQTVLAKLLGPLDEWEPRLRVAKESGYNMIHFTP 163 (1521)
T ss_pred --cCceEEEEee------eE-Eec----------CCCceeccchhhHHHHHHHhcCChhhhhHHHHHHHHcCCceEeeee
Confidence 1211122212 10 000 123345555555443211 67888888888999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCccCccccCccccCh
Q 002027 318 INDTSVNRMWWDSYPYSSLSVFALHPLYLRV 348 (978)
Q Consensus 318 l~~t~~~~~~~d~SPYs~~S~falNPlyI~l 348 (978)
|+..+.. .||||-..-.-+||-+-+.
T Consensus 164 lqelG~S-----~S~YSl~dql~~~~~~~~~ 189 (1521)
T KOG3625|consen 164 LQELGLS-----RSCYSLADQLELNPDFSRP 189 (1521)
T ss_pred HHHhccC-----CCccchHhhhhcChhhhcc
Confidence 9999854 3899988888888887733
No 124
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.70 E-value=1.6e+02 Score=26.57 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=35.2
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEEcCCCceEEEEEEEE
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIAVPIGFSCEYSYYVV 89 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~lp~~~~~eYKYvv~ 89 (978)
.++|+|-+++ -++|.|+... + +.++|...+++ +|++++.-- ....|+|.+.
T Consensus 9 ~~~F~vwAP~--A~~V~l~l~~-----~---~~~~m~~~~~G---~W~~~v~~~--~g~~Y~y~v~ 59 (85)
T cd02853 9 GTRFRLWAPD--AKRVTLRLDD-----G---EEIPMQRDGDG---WFEAEVPGA--AGTRYRYRLD 59 (85)
T ss_pred CEEEEEeCCC--CCEEEEEecC-----C---CcccCccCCCc---EEEEEeCCC--CCCeEEEEEC
Confidence 4789998775 4688888642 2 35788765544 599888632 4568999985
No 125
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=25.55 E-value=1.2e+02 Score=39.11 Aligned_cols=13 Identities=46% Similarity=0.733 Sum_probs=12.0
Q ss_pred cCCEEEecccccc
Q 002027 560 YFTAYRIDHILGF 572 (978)
Q Consensus 560 ~~dalRIDH~~Gf 572 (978)
..|.+||||+-|+
T Consensus 247 ~vdGlRIDh~dGL 259 (825)
T TIGR02401 247 LVDGLRIDHIDGL 259 (825)
T ss_pred CCceEEecccccc
Confidence 4899999999999
No 126
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=25.46 E-value=1.4e+02 Score=27.93 Aligned_cols=55 Identities=13% Similarity=0.256 Sum_probs=35.8
Q ss_pred EEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEE-cCCCceEEEEEEEE
Q 002027 24 TVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIA-VPIGFSCEYSYYVV 89 (978)
Q Consensus 24 ~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~-lp~~~~~eYKYvv~ 89 (978)
.++|+|-++. .++|.|+.... ++....++|+...++ +|.++|. +. ....|+|.|.
T Consensus 10 g~~F~vwAP~--A~~V~L~l~~~----~~~~~~~~m~~~~~G---vW~~~v~~~~--~g~~Y~y~i~ 65 (103)
T cd02856 10 GCNFAVHSEN--ATRIELCLFDE----DGSETRLPLTEEYGG---VWHGFLPGIK--AGQRYGFRVH 65 (103)
T ss_pred CeEEEEECCC--CCEEEEEEEeC----CCCEEEEEcccccCC---EEEEEECCCC--CCCEEEEEEC
Confidence 4778887764 47888887432 221235788765544 5998885 33 3568999994
No 127
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=25.33 E-value=1.7e+02 Score=36.04 Aligned_cols=103 Identities=18% Similarity=0.221 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeEeeccccccCCCc----------------hhhccCcccccccCcccCCCCCC----C---
Q 002027 470 FHLHIQLSEAAEYARKKGVVLKGDLPIGVDRNS----------------VDTWVYPNLFRMNTSTGAPPDYF----D--- 526 (978)
Q Consensus 470 ~~~~~Ql~~~~~yA~~~gI~L~gDLpigv~~dS----------------aDvWa~p~lF~~d~~aGaPPD~F----s--- 526 (978)
|=..+.+.++-..++++||.|+.|+++=-..+. ...|.....+. .....||-.+ .
T Consensus 84 fGt~edf~~Li~~~h~~gi~ii~D~viNh~~~~~~wf~~~~~~~~~y~d~~~~~~~~~~~--~g~~~~p~nw~~~~~~s~ 161 (545)
T KOG0471|consen 84 FGTEEDFKELILAMHKLGIKIIADLVINHRSDEVEWFKASPTSKTGYEDWYPWHDGSSLD--VGKRIPPLNWLSVFGGSA 161 (545)
T ss_pred ccHHHHHHHHHHHHhhcceEEEEeeccccCCccccccccCccccccceeeeeccCccccc--ccCCCCccchHhhhcccc
Confidence 556677889999999999999999998444321 22222222222 2234555321 1
Q ss_pred -----cCCCCC------CCCCCCHHHHHHhhhHHHHHHHH-H-HhccCCEEEeccccccceee
Q 002027 527 -----KNGQNW------GFPTYNWEEMSKDNYAWWRARLT-Q-MSKYFTAYRIDHILGFFRIW 576 (978)
Q Consensus 527 -----~~GQnW------G~P~ynw~~l~~~gy~ww~~Rlr-~-~~~~~dalRIDH~~GffR~W 576 (978)
+.+|.| +.|-.||+.-+ --.-+.+.++ . .-.=+|.+|||++.+.+---
T Consensus 162 ~~~~e~~~~~~l~~~~~~~pDln~~n~~--V~~~~~~~l~~~~~~~gvdGfRiD~v~~~~~~~ 222 (545)
T KOG0471|consen 162 WPFDEGRQKYYLGQFAVLQPDLNYENPD--VRKAIKEWLRDFWLEKGVDGFRIDAVKGYAGEN 222 (545)
T ss_pred CcccccccceeccchhhcCCCCCCCCHH--HHHHHHHHHHHHHhhcCCCeEEEEccccccccc
Confidence 112222 24555554321 2344555555 2 23448899999999876544
No 128
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=23.81 E-value=2.3e+02 Score=35.56 Aligned_cols=69 Identities=23% Similarity=0.419 Sum_probs=45.1
Q ss_pred EEEEEEEEEECCCCCEEEEEeccCCcCCCCCCCceeccccCCCCCccEEEEEE-cCCCceEEEEEEEEeCCCCeEEeecC
Q 002027 23 LTVKFRIPYYTHWGQSLLVCGSEPVLGSWDVKKGFLLSPVHQDDELIWSGSIA-VPIGFSCEYSYYVVDDRKNLLRWEMG 101 (978)
Q Consensus 23 ~~V~F~V~~~t~~Gq~L~VvGs~~~LG~W~~~~av~L~~~~~~~~~~W~~~V~-lp~~~~~eYKYvv~d~~g~~~~WE~g 101 (978)
..++|+|=++ .-+.|.|+|+- -+|+ +.+|.-.+..+..+|+++|. ++.+ -.|||.+.+.+|.. .+-..
T Consensus 36 ~~~~F~vWAP--~a~~V~vvgdf---n~w~---~~~~~~~~~~~~G~we~~vp~~~~G--~~Yky~l~~~~g~~-~~~~D 104 (628)
T COG0296 36 SGVRFRVWAP--NARRVSLVGDF---NDWD---GRRMPMRDRKESGIWELFVPGAPPG--TRYKYELIDPSGQL-RLKAD 104 (628)
T ss_pred CceEEEEECC--CCCeEEEEeec---CCcc---ceecccccCCCCceEEEeccCCCCC--CeEEEEEeCCCCce-eeccC
Confidence 4688988655 33578999884 3564 44444433322356998887 6765 79999999888844 34443
Q ss_pred C
Q 002027 102 K 102 (978)
Q Consensus 102 ~ 102 (978)
+
T Consensus 105 P 105 (628)
T COG0296 105 P 105 (628)
T ss_pred c
Confidence 3
No 129
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.46 E-value=67 Score=34.36 Aligned_cols=37 Identities=32% Similarity=0.485 Sum_probs=31.6
Q ss_pred cceEEeeecCccCC------CCCCcccCHHHHHHHHHHHHHcC
Q 002027 273 RGAGVAVPMFSVRS------EADLGVGEFLDLKLLVDWAVESG 309 (978)
Q Consensus 273 R~~Gv~~~l~SLrs------~~~~GIGdf~dl~~~~d~~~~~G 309 (978)
+.-|+.+=-|..|+ ..+.|||+..|++..+||+.+..
T Consensus 57 ~~~G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aaldW~~~~h 99 (210)
T COG2945 57 VKRGFATLRFNFRGVGRSQGEFDNGIGELEDAAAALDWLQARH 99 (210)
T ss_pred HhCCceEEeecccccccccCcccCCcchHHHHHHHHHHHHhhC
Confidence 56688888888887 78889999999999999988753
No 130
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=22.45 E-value=2.1e+02 Score=36.32 Aligned_cols=59 Identities=19% Similarity=0.131 Sum_probs=37.3
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccCCCcEEEEEeccCCCCceeeeEEEEC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAGESVWEADCVIQRGDFPIKYKYCKSG 233 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~~~~W~~~v~lp~~~~~~eYKyv~~~ 233 (978)
.+.|.|-+|+ -++|.|+=-. -++.++...++|....+..|++.|.=-.. ...|+|.+..
T Consensus 15 g~~F~vwap~---A~~V~L~l~~--~~~~~~~~~~~m~~~~~gvW~~~v~~~~~--g~~Y~yrv~g 73 (688)
T TIGR02100 15 GVNFALFSAN---AEKVELCLFD--AQGEKEEARLPLPERTDDIWHGYLPGAQP--GQLYGYRVHG 73 (688)
T ss_pred cEEEEEECCC---CCEEEEEEEc--CCCCceeeEEecccCCCCEEEEEECCCCC--CCEEEEEEee
Confidence 3899999987 5667665111 02223333457877778899998862213 3589998853
No 131
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=22.25 E-value=2.7e+02 Score=26.70 Aligned_cols=60 Identities=17% Similarity=0.091 Sum_probs=39.3
Q ss_pred EEEEEEEecccCCCCEEEEecCCcccCCCCccccccccccC---CCcEEEEEeccCCCCceeeeEEEEC
Q 002027 168 LVRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG---ESVWEADCVIQRGDFPIKYKYCKSG 233 (978)
Q Consensus 168 ~V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~---~~~W~~~v~lp~~~~~~eYKyv~~~ 233 (978)
.++|+|-+|+ .++|.|+.-.+.- ...+..-++|...+ +..|.+.|.=-..+ ..|+|.+..
T Consensus 8 g~~F~vwAP~---A~~V~L~lf~~~~-~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g--~~Y~y~v~g 70 (119)
T cd02852 8 GVNFSVYSSN---ATAVELLLFDPGD-GDEPALEIELDPSVNRTGDVWHVFVEGLKPG--QLYGYRVDG 70 (119)
T ss_pred CEEEEEECCC---CCEEEEEEEeCCC-CCCceEEEeCcCcccccCCEEEEEECCCCCC--CEEEEEECC
Confidence 3889999987 7888888733211 23343346776544 68999988632233 489998864
No 132
>PRK10785 maltodextrin glucosidase; Provisional
Probab=21.58 E-value=97 Score=38.56 Aligned_cols=33 Identities=24% Similarity=0.115 Sum_probs=28.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCC
Q 002027 292 VGEFLDLKLLVDWAVESGFHLVQLLPINDTSVN 324 (978)
Q Consensus 292 IGdf~dl~~~~d~~~~~G~~~~QilPl~~t~~~ 324 (978)
.|+-.|+++||+-|++.|+++|-=..+|.++..
T Consensus 222 ~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~~ 254 (598)
T PRK10785 222 LGGDAALLRLRHATQQRGMRLVLDGVFNHTGDS 254 (598)
T ss_pred cCCHHHHHHHHHHHHHCCCEEEEEECCCcCCCC
Confidence 456679999999999999999998888988754
No 133
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=20.80 E-value=4.2e+02 Score=24.68 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=33.3
Q ss_pred EEEEEEecccCCCCEEEEecCCcccCCCCccccccccccC----CCcEEEEEeccCCCCceeeeEEEECC
Q 002027 169 VRFKICIPNIEEDASVYVIGSTSMLGQWKLQNGLKLSYAG----ESVWEADCVIQRGDFPIKYKYCKSGK 234 (978)
Q Consensus 169 V~F~v~~~~~~~Gq~v~IvGs~~eLG~W~~~~av~L~~~~----~~~W~~~v~lp~~~~~~eYKyv~~~~ 234 (978)
|+|+++.+. ..=++|.|+-..... .+..+-++|...+ ...|++++.++ . ..+-|.|.+.+.
T Consensus 18 v~irlr~~~-~~v~~v~l~~~~~~~--~~~~~~~~M~~~~~~~~~~~~~~~i~~~-~-~~~~Y~F~l~~~ 82 (116)
T cd02857 18 LHIRLRTKK-GDVAKVYLRYGDPYD--KGEEEEVPMRKDGSDELFDYWEATLPPP-T-GRLRYYFELVDD 82 (116)
T ss_pred EEEEEEecC-CCccEEEEEEECCCC--CCCceEEEEEEeeeCCceeEEEEEEecC-C-cEEEEEEEEEcC
Confidence 445554443 223555554333221 0112345676533 35699999876 3 568899988653
No 134
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=20.30 E-value=1.5e+02 Score=29.57 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCeEeeccccccCCCchhhccCcccccccCcccCCCC--CCCcCCCCCCCCCCCHHHHHHhhhHHHHHH
Q 002027 476 LSEAAEYARKKGVVLKGDLPIGVDRNSVDTWVYPNLFRMNTSTGAPPD--YFDKNGQNWGFPTYNWEEMSKDNYAWWRAR 553 (978)
Q Consensus 476 l~~~~~yA~~~gI~L~gDLpigv~~dSaDvWa~p~lF~~d~~aGaPPD--~Fs~~GQnWG~P~ynw~~l~~~gy~ww~~R 553 (978)
|.++.+.|+++||.+++=+-++++...++ .||+.|..+. -|.|+. .+...| |....+|=... +.-.+.
T Consensus 46 lge~v~a~h~~Girv~ay~~~~~d~~~~~--~HPeW~~~~~-~G~~~~~~~~~~~~--~~~~c~ns~Y~-----e~~~~~ 115 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFSWDEDAAE--RHPEWFVRDA-DGRPMRGERFGYPG--WYTCCLNSPYR-----EFLLEQ 115 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeeecChHHHH--hCCceeeECC-CCCCcCCCCcCCCC--ceecCCCccHH-----HHHHHH
Confidence 57788899999999999999887766665 8999999885 566632 222222 54444452222 245566
Q ss_pred HHHHhccC
Q 002027 554 LTQMSKYF 561 (978)
Q Consensus 554 lr~~~~~~ 561 (978)
++...+.|
T Consensus 116 i~Ei~~~y 123 (132)
T PF14871_consen 116 IREILDRY 123 (132)
T ss_pred HHHHHHcC
Confidence 66665544
Done!