BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002028
         (978 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 12 Lacking The Second
           Zinc- Binding Site
          Length = 60

 Score =  105 bits (261), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 46/55 (83%)

Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFD 227
           CQVDNC  DLS  KDYHRRHKVCE+HSK+T ALVG  MQRFCQQCSRFH L EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60


>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa
           Promoter Binding Protein-Like 4
          Length = 94

 Score = 99.8 bits (247), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 42/71 (59%), Positives = 51/71 (71%)

Query: 163 GSPGTAPYPMCQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHP 222
           GS G++   +CQVD C  D+  AK YHRRHKVCE+H+K++   +    QRFCQQCSRFH 
Sbjct: 1   GSSGSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHD 60

Query: 223 LSEFDEGKRSC 233
           L EFDE KRSC
Sbjct: 61  LQEFDEAKRSC 71


>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa
           Promoter Binding Protein-like 7
          Length = 88

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query: 173 CQVDNCKEDLSNAKDYHRRHKVCELHSKSTKALVGKQMQRFCQQCSRFHPLSEFDEGKRS 232
           CQV +C+ D+S  K YH+RH+VC   + ++  ++  + +R+CQQC +FH L +FDEGKRS
Sbjct: 6   CQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRS 65

Query: 233 C 233
           C
Sbjct: 66  C 66


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,206,666
Number of Sequences: 62578
Number of extensions: 996596
Number of successful extensions: 2145
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2142
Number of HSP's gapped (non-prelim): 3
length of query: 978
length of database: 14,973,337
effective HSP length: 108
effective length of query: 870
effective length of database: 8,214,913
effective search space: 7146974310
effective search space used: 7146974310
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)