BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002030
(978 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72302|CGMA_RHIME Putative cyclic beta-1,2-glucan modification protein OS=Rhizobium
meliloti (strain 1021) GN=cgmA PE=4 SV=2
Length = 639
Score = 41.2 bits (95), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 15/105 (14%)
Query: 334 HRYV-STGQVESDLLFAANNLLMEIEKDAKAAKDADYSKILSSILNTILDWAGQRLRDYH 392
+RY +T +VE DL A +L + K A D+ L ++DWA +R R+
Sbjct: 437 NRYAKNTIKVEGDLPEADRQVLATYAQGVKEADDS---------LKMLMDWAKERDRETI 487
Query: 393 DIFHDDNIDSLETVVSLGVLSATILVEGISQEYRGKKNQVDVAHD 437
+ D++ L TV S+T ++GI+ E +G K+Q+ H+
Sbjct: 488 IVLFGDHLPPLNTV-----YSSTGYMKGITAERKGPKDQMKAEHE 527
>sp|P91443|HUM6_CAEEL Unconventional myosin heavy chain 6 OS=Caenorhabditis elegans
GN=hum-6 PE=1 SV=1
Length = 2098
Score = 35.8 bits (81), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 93/217 (42%), Gaps = 28/217 (12%)
Query: 775 VEAIQQLSEAIAYKVIFHDLSHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISS---TVH 831
VEAIQ + I +KV F D + + + V S++R F ++ + L + SS ++
Sbjct: 1768 VEAIQHKTTQIFHKVFFPDNTD---EAIEVD--SATRARDFCHKIGYRLGLKSSDGFSLF 1822
Query: 832 DRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFK-FLCDLFWSN---GD 887
+++ +V+ F ++ L + T +D+ +I +++ + W N G
Sbjct: 1823 VKIKDKVLAVPESEFFFDYVRSLSDWVHTNHATQKDATMIPINYQVYFMRKLWYNFVAGA 1882
Query: 888 GLPADLIDKFSTSVRSILPLYHNDTESLIEEFKRLTLESYGSSAK----SRLP------L 937
AD+I + + L YH T++ + E L L S K +++P +
Sbjct: 1883 DPQADIIFHYHQESQKYLLGYHKTTKNDVIELAALILRSMTKDGKNAPLAQIPQLLDEII 1942
Query: 938 PPTS------GQWNPTEPNTVLRVLCYRSDETAVKFL 968
P S +W T N R+ +SD+ ++FL
Sbjct: 1943 PKDSLKMYSASEWRKTISNAYARIEHLKSDQAKIEFL 1979
>sp|Q2RKH8|CHEB_MOOTA Chemotaxis response regulator protein-glutamate methylesterase
OS=Moorella thermoacetica (strain ATCC 39073) GN=cheB
PE=3 SV=1
Length = 424
Score = 35.0 bits (79), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 21/155 (13%)
Query: 81 ERTPAPSLSSAPSLQRSLTS-TAASKVKKALGMKSIKKRVSGESVGQGKAKRAVTVGELV 139
E TPAP +S P + ++ + T ++ A+G + R G G+ AV+ G
Sbjct: 145 ENTPAPFISPRPGREEAVAAVTGSAAATAAIGSRLSPGRSPG---GKEGVAGAVSAGSTR 201
Query: 140 RAQMRISEQTDSRIRRALLRIAGSQLGKR--IETMVLPLELLQQIKPTDFTSQKEYEAWK 197
+R + T + I+ A+ AG G+R IE + + TS A +
Sbjct: 202 GEAIRPGKGTPAAIKGAVAAGAGRLPGRRPGIEVVAI------------GTSTGGPAALR 249
Query: 198 KRIFKL---LEAGLLMHPHLPLDNTSTDARRLRQI 229
+ + L L AG+++ H+P T ARRL ++
Sbjct: 250 QVLTALPGNLPAGIVIVQHMPAGFTGPLARRLDEL 284
>sp|Q6ZPZ3|ZC3H4_MOUSE Zinc finger CCCH domain-containing protein 4 OS=Mus musculus GN=Zc3h4
PE=1 SV=2
Length = 1304
Score = 33.9 bits (76), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%)
Query: 543 KLEKNLVQIAVEDSVDSEDGGKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNL 602
+L + L E S+ S G S + PP E E L + +NI +D L R+
Sbjct: 900 RLARALPTSKAEGSLHSSPAGPSSSKGQPPAEEEEGERALREKAVNIPLDPLPGHPLRDP 959
Query: 603 QQEVWNARANKESIAPSAVEVLRTIDETMEAFFMLPIPMHSV 644
+ ++ K+ + S RT+ E LPIP V
Sbjct: 960 RSQLQQFSHIKKDVTLSKPSFARTVLWNPEDLIPLPIPKQDV 1001
>sp|Q9U3H8|TAPT1_CAEEL Protein TAPT1 homolog OS=Caenorhabditis elegans GN=F26F2.7 PE=3
SV=1
Length = 712
Score = 33.5 bits (75), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 16/103 (15%)
Query: 6 RDKAAPPGDSKRHVNNNNVHIMPA----YPIDDVVSPFGDAAPNISDSELR-----ETAY 56
+ K+AP ++ +V PA + + D++S + + P++ SE+R ETA
Sbjct: 548 KSKSAPNSPRMSLIDFTDVLHQPAAGKGFTVSDMLSQWEELQPSLLSSEIRRSTDRETAV 607
Query: 57 EILVGACRSTGVRP-----LTYIPQSERAERTPAPSLSSAPSL 94
L RS P + +IP+ +R+E PAPS+ P L
Sbjct: 608 SHLTA--RSDERTPRRAVSMAHIPRRDRSEPPPAPSMDQDPQL 648
>sp|Q622K8|HUM6_CAEBR Unconventional myosin heavy chain 6 OS=Caenorhabditis briggsae
GN=hum-6 PE=3 SV=1
Length = 2099
Score = 33.5 bits (75), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 93/224 (41%), Gaps = 28/224 (12%)
Query: 775 VEAIQQLSEAIAYKVIFHDLSHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISS---TVH 831
VEAIQ + I +KV F D + + + V S++R F ++ + L + SS ++
Sbjct: 1769 VEAIQHKTTQIFHKVFFPDKTD---EAIEVD--SATRARDFCHKIGYRLGLKSSDGFSLF 1823
Query: 832 DRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFK-FLCDLFWSN---GD 887
+++ +V+ F ++ L + +DS +I +++ + W N G
Sbjct: 1824 VKIKDKVLAVPETEFFFDYVRSLSDWVHTNHAMQKDSTMIPINYQVYFMRKLWFNFVPGA 1883
Query: 888 GLPADLIDKFSTSVRSILPLYHNDTESLIEEFKRLTLESYGSSAK----SRLP------L 937
AD+I + + L YH T++ + E L L + K +++P +
Sbjct: 1884 DSQADIIFHYHQESQKYLLGYHKTTKNDVIELAALILRAMTKEGKNAPLAQIPQLLDDIV 1943
Query: 938 PPTS------GQWNPTEPNTVLRVLCYRSDETAVKFLKKAYNLP 975
P S +W T N RV + D+ ++FLK P
Sbjct: 1944 PKDSLKMCSASEWRKTISNAYARVEHLKPDQAKIEFLKYICRWP 1987
>sp|Q8BR07|BICD1_MOUSE Protein bicaudal D homolog 1 OS=Mus musculus GN=Bicd1 PE=1 SV=2
Length = 835
Score = 33.5 bits (75), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 179 LQQIKPTDFTSQKEYEAWKKRIFKLLEAGLLMHPHLPLDNTSTDARRLRQIIRGAVERPL 238
LQ++ T +Q EYE K I + E +L++ L DA RL++I +E L
Sbjct: 182 LQKLVSTLKQNQVEYEGLKHEIKRFEEETVLLNSQLE------DAIRLKEIAEHQLEEAL 235
Query: 239 ETGKN-YESMQNLR 251
ET KN E NLR
Sbjct: 236 ETLKNEREQKNNLR 249
>sp|O13683|YDY2_SCHPO Uncharacterized protein C11E3.02c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC11E3.02c PE=4 SV=1
Length = 1237
Score = 33.1 bits (74), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 61/137 (44%), Gaps = 12/137 (8%)
Query: 805 GEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMK-------ASFEGFLLVLLAG 857
GE++ +IE + EL Y ++ S + + V +M + E LL ++
Sbjct: 1006 GELTDVQIEAAIYELLDYFDLNFSIIAKHLTKDVFVTVMSYVWDEVVCTTEELLLPPVSV 1065
Query: 858 GP--SRAFTHQDSDIIEEDFKFLCDLFWSNGDG--LPADLIDKFSTSVRSILPLYHNDTE 913
P + + I+ +FL D F++NG+G LP D + +R + Y T+
Sbjct: 1066 KPINRKPLSPAQMAIVYRWLQFLKDYFYANGEGVKLPVLETDHYKELLR-VQEYYDKPTD 1124
Query: 914 SLIEEFKRLTLESYGSS 930
L++E ++ + Y SS
Sbjct: 1125 FLLQECDKIASQLYLSS 1141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 348,269,769
Number of Sequences: 539616
Number of extensions: 14485761
Number of successful extensions: 42307
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 42294
Number of HSP's gapped (non-prelim): 32
length of query: 978
length of database: 191,569,459
effective HSP length: 127
effective length of query: 851
effective length of database: 123,038,227
effective search space: 104705531177
effective search space used: 104705531177
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)