Query 002030
Match_columns 978
No_of_seqs 141 out of 160
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 09:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002030.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002030hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swh_A MUNC13-1, protein UNC-1 100.0 1.4E-40 4.8E-45 369.5 21.2 293 575-921 7-337 (341)
2 2fji_1 Exocyst complex compone 99.0 2.2E-08 7.5E-13 113.5 21.4 334 576-963 6-355 (399)
3 2a2f_X Exocyst complex compone 95.6 0.26 8.9E-06 54.6 16.7 277 579-909 9-317 (325)
4 3hr0_A COG4; conserved oligome 95.0 0.1 3.5E-06 56.2 10.7 218 722-964 21-255 (263)
5 3fhn_A Protein transport prote 69.1 1.9E+02 0.0064 35.3 19.4 162 722-892 461-642 (706)
6 1nrj_A Signal recognition part 23.5 34 0.0011 33.7 2.1 27 297-323 96-122 (158)
7 2ob9_A Tail assembly chaperone 23.3 69 0.0024 31.0 4.1 38 835-873 62-99 (130)
8 1nnv_A Hypothetical protein HI 23.3 36 0.0012 31.9 2.1 19 45-63 10-28 (110)
9 3fx7_A Putative uncharacterize 19.8 67 0.0023 29.5 3.1 24 189-212 67-90 (94)
10 2a2f_X Exocyst complex compone 19.4 4.7E+02 0.016 28.7 10.4 88 538-638 150-239 (325)
No 1
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=100.00 E-value=1.4e-40 Score=369.53 Aligned_cols=293 Identities=16% Similarity=0.281 Sum_probs=224.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHhhhhccccccCC---CCCCCCccHHHHHHHHHHHHHHHhcCCCCc---cccchHH
Q 002030 575 AEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWNARA---NKESIAPSAVEVLRTIDETMEAFFMLPIPM---HSVLLPE 648 (978)
Q Consensus 575 iE~~~~~lV~~Wi~~~~~ki~ewV~raiq~E~W~P~s---~~e~hS~SVVDvFrmi~Etvd~ff~L~~p~---~~~lL~~ 648 (978)
.+.+|.++|++|+++..+++.+||++|++.|+|+|.+ ++.+||+||||+|++|+|+++.+.+|.||+ ...|++.
T Consensus 7 ~~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~ 86 (341)
T 3swh_A 7 YPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRR 86 (341)
T ss_dssp --CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4679999999999999999999999999999999986 677999999999999999999999999997 4579999
Q ss_pred HHHhHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccccccccccCcCCCCCCCCCCCcccceeecc
Q 002030 649 LISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQVGTTNGDNSFGVPQLCCRIN 728 (978)
Q Consensus 649 Ls~Gid~~lq~Y~~~v~~~~gske~~iP~~P~LTR~~~eskf~~~~KKa~~~~~~~e~~~~g~~~~~~s~~~~~LCVrLN 728 (978)
|++.|.+++..||+.+.. +|..+..+ + +...+||.+|
T Consensus 87 l~~~i~~~~~~Y~~~l~~----------------------~~~~~~~~--------e-------------~~~~~Cv~lN 123 (341)
T 3swh_A 87 FAKTISNVLLQYADIVSK----------------------DFASYCSK--------E-------------KEKVPCILMN 123 (341)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------HHHHHCCT--------T-------------SCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------------HHHhhhhh--------h-------------cccchhhhcc
Confidence 999999999999999954 23221000 0 1235899999
Q ss_pred cHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhhhhhh------cccchhhHhhh
Q 002030 729 TFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYKVIF------HDLSHVLWDGL 802 (978)
Q Consensus 729 nLeyil~qLd~LEk~I~~~w~~~~S~~~~~~~~~~~~~F~~ar~sl~~ai~~l~e~ia~rvVF------~Dl~~~l~d~L 802 (978)
|++|++.+|++|.+.+. |. .+....+...+..+..++..+++++...+.++.- .-|...+.. +
T Consensus 124 Nie~lR~~L~~l~~~l~--~~--------~l~~~~~~~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~~-i 192 (341)
T 3swh_A 124 NTQQLRVQLEKMFEAMG--GK--------ELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQ-V 192 (341)
T ss_dssp HHHHHHHHHHHHHHHTT--TT--------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-C
T ss_pred cHHHHHHHHHHHHHhcc--hh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h
Confidence 99999999999999772 22 1233556677889999999999998888877521 111111111 0
Q ss_pred c-cCcc-----------ccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH------------hCCC
Q 002030 803 Y-VGEV-----------SSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVL------------LAGG 858 (978)
Q Consensus 803 Y-~g~V-----------~~~RI~p~L~~Ld~~L~~l~~~l~d~~r~~vv~~vmkAs~dafL~VL------------L~GG 858 (978)
- .|.+ .+.+|+|+++|||++|..++++++++++++|++++|++++++|+.++ ++||
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~ 272 (341)
T 3swh_A 193 KGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVRE 272 (341)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----
T ss_pred cccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhccc
Confidence 0 0111 25689999999999999999999999999999999999999999988 6999
Q ss_pred CCCCCCccchHHHHHHHHHHHHhcccCCCCCcHHHHHH--HHHhHhhhccccccChHHHHHHHHH
Q 002030 859 PSRAFTHQDSDIIEEDFKFLCDLFWSNGDGLPADLIDK--FSTSVRSILPLYHNDTESLIEEFKR 921 (978)
Q Consensus 859 psR~Fs~~D~~miEeDl~~LKd~F~a~GeGLp~e~Ve~--~a~~v~~Vl~L~~~~Te~LIe~f~~ 921 (978)
+.|.|+++++++++++|+.|++||||+|+|||.+.+|+ +++.++++|.||.++|+.||+.|..
T Consensus 273 ~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~~ 337 (341)
T 3swh_A 273 EAKSLTPKQCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLYTQATDLLIKTFVQ 337 (341)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHGGGTSCCHHHHHTCHHHHHHHHHHHHC-------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhccCCCCCCHHHHccChhHHHHHHHHHHhcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999997 7999999999999999999999854
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.2e-08 Score=113.53 Aligned_cols=334 Identities=14% Similarity=0.177 Sum_probs=210.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhcc--ccc-----cCCCC--CCCCccHHHHHHHHHHHHHHHhcCCCC-ccccc
Q 002030 576 EAAIGNLAKSWINIRVDRLKEWVCRNLQQE--VWN-----ARANK--ESIAPSAVEVLRTIDETMEAFFMLPIP-MHSVL 645 (978)
Q Consensus 576 E~~~~~lV~~Wi~~~~~ki~ewV~raiq~E--~W~-----P~s~~--e~hS~SVVDvFrmi~Etvd~ff~L~~p-~~~~l 645 (978)
++....++..|++....++.+|++|++++| .|. |..+. ..|++.++|||+|++|.++.-....=. ....+
T Consensus 6 ~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v 85 (399)
T 2fji_1 6 DKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGV 85 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 456778899999999999999999999999 787 22222 358999999999999999988876522 22233
Q ss_pred hHHHHHhHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhcccccc-ccccCcCCCCCCCCCCCcccce
Q 002030 646 LPELISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTA-QKRKSQVGTTNGDNSFGVPQLC 724 (978)
Q Consensus 646 L~~Ls~Gid~~lq~Y~~~v~~~~gske~~iP~~P~LTR~~~eskf~~~~KKa~~~~~-~~e~~~~g~~~~~~s~~~~~LC 724 (978)
+......+.+-.+.|...+.+.+ .+|.. .-+++|+. |.++ +.+ . ........+|
T Consensus 86 ~~~~~~~L~~f~~~~~~~l~~~~-------------~~~~~--~~~~~~~~--~~~~~~~~-~-------~~~~~~e~li 140 (399)
T 2fji_1 86 VERFSDLLTKRQKNWISKISEEI-------------KKQIN--YNHKYDID--PESITPED-E-------CPGGLVEYLI 140 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHH--HHHTTTTG--GGSCCTTT-C-------CCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHhc--cccccccc--ccccCccc-c-------ccccHHHhhh
Confidence 33333333333333333332100 00000 00011221 0000 000 0 0011355778
Q ss_pred eecccHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhHhhhcc
Q 002030 725 CRINTFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYKVIFHDLSHVLWDGLYV 804 (978)
Q Consensus 725 VrLNnLeyil~qLd~LEk~I~~~w~~~~S~~~~~~~~~~~~~F~~ar~sl~~ai~~l~e~ia~rvVF~Dl~~~l~d~LY~ 804 (978)
.-+||-......++.|++.+...+... ..+.+...|+.+.....+...+-+..+. ..||.|++..| ..||.
T Consensus 141 A~~Nn~~~~~e~~~~l~~~~~~~~~~~-------~~~~~~~~l~~~~~~f~~l~~~~~~~L~-~~if~dl~p~~-~~lft 211 (399)
T 2fji_1 141 AVSNDQMKAADYAVAISSKYGKLVSKV-------YEKQITNHLEGTLDGFAEVAQCSSLGLI-TLMFDDLRKPY-QEIFS 211 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCHH-------HHHHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHHTTHHHH-TTTTS
T ss_pred hhhccHHHHHHHHHHHHHHHHHhccHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-HHhCC
Confidence 888999988888888888765422110 0111233444444443333333333322 24778887443 44343
Q ss_pred Ccc-ccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCC-CCCCccchHHHHHHHHHHHHhc
Q 002030 805 GEV-SSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPS-RAFTHQDSDIIEEDFKFLCDLF 882 (978)
Q Consensus 805 g~V-~~~RI~p~L~~Ld~~L~~l~~~l~d~~r~~vv~~vmkAs~dafL~VLL~GGps-R~Fs~~D~~miEeDl~~LKd~F 882 (978)
..= .+.-++.++..++.++.-+...+++.....++.++...++-.++..++. +.+ |.....=.+-|..|.+.|++||
T Consensus 212 ~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f 290 (399)
T 2fji_1 212 KTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLF 290 (399)
T ss_dssp GGGTTCCHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHH
T ss_pred chhcCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 221 2236799999999999999999999999999999999999999999997 332 3222455788999999999999
Q ss_pred ccCCCCCc--HHHHHHHHHhHhhhccccccCh-HHHHHHHHHHhhhhcCCCCCccCCCCCCCCCCCCCCccceeeecccc
Q 002030 883 WSNGDGLP--ADLIDKFSTSVRSILPLYHNDT-ESLIEEFKRLTLESYGSSAKSRLPLPPTSGQWNPTEPNTVLRVLCYR 959 (978)
Q Consensus 883 ~a~GeGLp--~e~Ve~~a~~v~~Vl~L~~~~T-e~LIe~f~~a~~~~~g~~~~s~~p~ppt~~~w~~~d~nTiLRVLchR 959 (978)
-.-|.+-+ ...++.....+..+.. ...++ +.+.+.|.... . . .|. -.++.+-.||.-|
T Consensus 291 ~~~~~~~~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~-~--------~--------ypD-~~~~~V~aiL~~R 351 (399)
T 2fji_1 291 VKVLDGNESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYL-E--------V--------YWD-SRIDLLVGILKCR 351 (399)
T ss_dssp HHHTTTCTTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHH-T--------T--------CTT-CCSHHHHHHHTTC
T ss_pred HHhccccchhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHH-H--------h--------CCC-CCHHHHHHHHHhc
Confidence 87765432 2346777788888888 77788 88888877665 1 1 233 3678899999999
Q ss_pred Cchh
Q 002030 960 SDET 963 (978)
Q Consensus 960 ~D~~ 963 (978)
.|=.
T Consensus 352 ~D~~ 355 (399)
T 2fji_1 352 KDVS 355 (399)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 8643
No 3
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=95.57 E-value=0.26 Score=54.60 Aligned_cols=277 Identities=16% Similarity=0.122 Sum_probs=160.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhccccccCC---------------------------CCCCCCccHHHHHHHHHHHH
Q 002030 579 IGNLAKSWINIRVDRLKEWVCRNLQQEVWNARA---------------------------NKESIAPSAVEVLRTIDETM 631 (978)
Q Consensus 579 ~~~lV~~Wi~~~~~ki~ewV~raiq~E~W~P~s---------------------------~~e~hS~SVVDvFrmi~Etv 631 (978)
+..+-.+..+--..+..+=+++++++|++.|+- ..=+||+.|.++.+.++..+
T Consensus 9 L~~l~d~Y~elLl~~~~~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~~ir~fi 88 (325)
T 2a2f_X 9 LHNMRDHYNEVLLQRWVHVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYHQAKEFM 88 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHHHHHHHH
Confidence 333333344444444445556677777777765 11268999999999999999
Q ss_pred HHHhcCCCCccccchHHH---HHhHHHHHHHHHHHHHhccCCCCCCCCCCCcccccccCcchhhhhhhccccccccccCc
Q 002030 632 EAFFMLPIPMHSVLLPEL---ISGLDGCLQHYVLKAKSGCGSRNNFIPTMPALTRCTMGSKFGAFKRKEKLHTAQKRKSQ 708 (978)
Q Consensus 632 d~ff~L~~p~~~~lL~~L---s~Gid~~lq~Y~~~v~~~~gske~~iP~~P~LTR~~~eskf~~~~KKa~~~~~~~e~~~ 708 (978)
+.++.+- ..+ ..-++..+.+|.+.+.. |. +-+-.++...
T Consensus 89 ~~~~~F~--------~~~~~~~~eidd~lrks~d~LL~----------------~~-----v~~~L~~~i~--------- 130 (325)
T 2a2f_X 89 YACMKFA--------EELTLSPNEVAAMVRKAANLLLT----------------RS-----FSGCLSVVFR--------- 130 (325)
T ss_dssp HHHHHHH--------HHTTCCHHHHHHHHHHHHHHHHH----------------HH-----HHHHHHHHHT---------
T ss_pred HHHHHHH--------HhcccCcchHHHHHHHHHHHHHH----------------HH-----HHHHHHHHHh---------
Confidence 9887642 222 12345556666665522 10 0000111100
Q ss_pred CCCCCCCCCCCcccceeecccHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhhh
Q 002030 709 VGTTNGDNSFGVPQLCCRINTFQHIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYK 788 (978)
Q Consensus 709 ~g~~~~~~s~~~~~LCVrLNnLeyil~qLd~LEk~I~~~w~~~~S~~~~~~~~~~~~~F~~ar~sl~~ai~~l~e~ia~r 788 (978)
....+..+..=.+=|++|...-...||+.|..- ..+++ +. .......|..+|+++ -++|.+.+..|
T Consensus 131 ------~~~~~l~qi~Qi~iNl~~le~ac~~le~~l~~~-~~~~~-~~---~l~a~~~f~~~r~~A---e~~I~~~v~~K 196 (325)
T 2a2f_X 131 ------QPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHM-TNTER-SV---SQTPSAMFHVARQDA---EKQVGLRICSK 196 (325)
T ss_dssp ------CTTSCHHHHHHHHHHHHHHHTTHHHHHHHHHHH-HTCCC-----------CCSCCCTTHH---HHHHHHHHHHH
T ss_pred ------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCc-cc---chhHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 001123344445667777777777777776653 22211 11 112345677777754 44445555556
Q ss_pred hh-hcccchhhHhhhccCccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccc
Q 002030 789 VI-FHDLSHVLWDGLYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQD 867 (978)
Q Consensus 789 vV-F~Dl~~~l~d~LY~g~V~~~RI~p~L~~Ld~~L~~l~~~l~d~~r~~vv~~vmkAs~dafL~VLL~GGpsR~Fs~~D 867 (978)
+- |.++-+.=|..-=..+=++.=|..++.+|+..... -..+...++..+..+.|+.+=+.++-.|++. .-+.|+..-
T Consensus 197 IDdfl~la~yDW~~~~~~~~ps~yi~dli~fL~~~f~s-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~-~vk~in~~a 274 (325)
T 2a2f_X 197 IDEFFELSAYDWLLVEPPGIASAFITDMISYLKSTFDS-FAFKLPHIAQAACRRTFEHIAEKIYSIMYDE-DVKQISTGA 274 (325)
T ss_dssp HHHHHTTCCTTCC----CCSCCHHHHHHHHHHHHHHHT-TTTTSHHHHHHHHHHHHHHHHHHHHHHHTC-------CCTT
T ss_pred HHHHHHhcccCCCCCCCCCCccHHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHHHHHHhcCc-chhhcCHHH
Confidence 42 33433211222111222355589999999999994 6688999999999999999999999988752 337789999
Q ss_pred hHHHHHHHHHHHHhcccCC-CCCcHHHHHHHHHhHhhhccccc
Q 002030 868 SDIIEEDFKFLCDLFWSNG-DGLPADLIDKFSTSVRSILPLYH 909 (978)
Q Consensus 868 ~~miEeDl~~LKd~F~a~G-eGLp~e~Ve~~a~~v~~Vl~L~~ 909 (978)
+.-++-|++.|.+|=-+++ .|+....+...-..+++.++|+-
T Consensus 275 v~~~~~Dv~~lE~fa~~~~v~~l~~~~L~~~F~eLrQli~Ll~ 317 (325)
T 2a2f_X 275 LTQINLDLMQCEFFAASEPVPGLKEGELSKYFLRNRQLLDLLI 317 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCSSSSCCSSTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHHHHHHHH
Confidence 9999999999999954432 45543344555566777777553
No 4
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=94.96 E-value=0.1 Score=56.22 Aligned_cols=218 Identities=14% Similarity=0.173 Sum_probs=138.7
Q ss_pred cceeecccHHHHHHHHHHHHHHHHhhhccCCCCCCCC------cc---cchhhhhH-HHHHHHHHHHHHHH-HHhhhhh-
Q 002030 722 QLCCRINTFQHIRKELEVLEKKTVHQLRSSHSTRTDN------IT---NGIEKRFE-LSAASSVEAIQQLS-EAIAYKV- 789 (978)
Q Consensus 722 ~LCVrLNnLeyil~qLd~LEk~I~~~w~~~~S~~~~~------~~---~~~~~~F~-~ar~sl~~ai~~l~-e~ia~rv- 789 (978)
.-||-||||+-...-+..|-+.+...+...++..... +. .++.. |. ..++.++++|++|. .++-.|+
T Consensus 21 ~Flv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~-~~~k~~~ll~~gi~~Lf~~~ikprLr 99 (263)
T 3hr0_A 21 SFLVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAA-VSNKFRDLLQEGLTELNSTAIKPQVQ 99 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hHhheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 5699999997555555555444444343333321100 00 12221 22 33566889999996 6888876
Q ss_pred ----hhcccchhhHhhhcc-CccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Q 002030 790 ----IFHDLSHVLWDGLYV-GEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFT 864 (978)
Q Consensus 790 ----VF~Dl~~~l~d~LY~-g~V~~~RI~p~L~~Ld~~L~~l~~~l~d~~r~~vv~~vmkAs~dafL~VLL~GGpsR~Fs 864 (978)
.|.|..+.+-+.=|. -+..+.-++.+...+++.|.-+..+++....+.++.-+...+...++..++.+ .|+
T Consensus 100 ~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~~----~fn 175 (263)
T 3hr0_A 100 PWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLKS----TFN 175 (263)
T ss_dssp HHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTC----CBC
T ss_pred HHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHhC----CcC
Confidence 355554433221111 02234457888888999999999999999999999999999988889988863 388
Q ss_pred ccchHHHHHHHHHHHHhcccCCCCCcHHHHHHHHHhHhhhccccccChHHHHHHHHHHhhhhcCCCCCccCCCCCCCCCC
Q 002030 865 HQDSDIIEEDFKFLCDLFWSNGDGLPADLIDKFSTSVRSILPLYHNDTESLIEEFKRLTLESYGSSAKSRLPLPPTSGQW 944 (978)
Q Consensus 865 ~~D~~miEeDl~~LKd~F~a~GeGLp~e~Ve~~a~~v~~Vl~L~~~~Te~LIe~f~~a~~~~~g~~~~s~~p~ppt~~~w 944 (978)
+=-.--+|.|++.|-.||++-|. ..+-| .-.++.+|+.++.++...=+.+|.... .| ...|
T Consensus 176 ~lGal~LdrDvr~li~~~~~~~~---~~lRe-kF~RL~QI~~lLnle~~eev~d~~~~~---~~------------~~~W 236 (263)
T 3hr0_A 176 RLGGLQFDKELRSLIAYLTTVTT---WTIRD-KFARLSQMATILNLERVTEILDYWGPN---SG------------PLTW 236 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC---TTHHH-HTHHHHHHHHHHTCSSGGGGGGTSGGG---GT------------TCCC
T ss_pred chhHHHHHHHHHHHHHHHHhccc---hhhhH-HHHHHHHHHHHHcCCChHHHHHHhccc---CC------------Cccc
Confidence 88889999999999999987432 22333 344566777777666532111110000 01 1246
Q ss_pred CCCCccceeeeccccCchhH
Q 002030 945 NPTEPNTVLRVLCYRSDETA 964 (978)
Q Consensus 945 ~~~d~nTiLRVLchR~D~~A 964 (978)
.-+|+-+-|||..|.|-..
T Consensus 237 -~Ls~~E~r~il~lRvDf~~ 255 (263)
T 3hr0_A 237 -RLTPAEVRQVLALRIDFRS 255 (263)
T ss_dssp -CSCHHHHHHHHTTBTTSCH
T ss_pred -cCCHHHHHHHHHhhccCCH
Confidence 4788889999999988544
No 5
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=69.07 E-value=1.9e+02 Score=35.29 Aligned_cols=162 Identities=13% Similarity=0.201 Sum_probs=96.0
Q ss_pred cceeecccHHHHHHHHHHHHHHHH--hhhccCCCCCCCCcccchhhhhHHHHHHHHHHHHH-HHHHhhhhhhhcccch--
Q 002030 722 QLCCRINTFQHIRKELEVLEKKTV--HQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQ-LSEAIAYKVIFHDLSH-- 796 (978)
Q Consensus 722 ~LCVrLNnLeyil~qLd~LEk~I~--~~w~~~~S~~~~~~~~~~~~~F~~ar~sl~~ai~~-l~e~ia~rvVF~Dl~~-- 796 (978)
+.|..||+|.|+...|...-+.+- +=|....... .....+.|+.+.+...+-+.+ +-+.+...++ ...+.
T Consensus 461 ~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t----~s~~gSIFDetIs~Y~~L~~~~~~~~Iv~~v~-~eik~~l 535 (706)
T 3fhn_A 461 QTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTE----SKKYNSLFQNVENDYEKAMSTDMQNSIVHRIQ-KLLKETL 535 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHT----TCCCSCTTHHHHHHHHHHHHTHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhccc----CcccCccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 347788999888854443322110 0111110000 113468999999988887777 6666655433 22222
Q ss_pred ------hhHhhhccCc-------c-ccccchhhHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 002030 797 ------VLWDGLYVGE-------V-SSSRIEPFLQELEHYLEIISST-VHDRVRTRVITDIMKASFEGFLLVLLAGGPSR 861 (978)
Q Consensus 797 ------~l~d~LY~g~-------V-~~~RI~p~L~~Ld~~L~~l~~~-l~d~~r~~vv~~vmkAs~dafL~VLL~GGpsR 861 (978)
.-|.++-.+. + .++-+-|+|..|...|..|... +......++-+.+....-+=+.--+|- ..
T Consensus 536 K~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~---~n 612 (706)
T 3fhn_A 536 RNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILK---LN 612 (706)
T ss_dssp HHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT---TS
T ss_pred HHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh---cC
Confidence 1244432221 1 2556899999999999999888 566655554444444432222222222 35
Q ss_pred CCCccchHHHHHHHHHHHHhcccCCCCCcHH
Q 002030 862 AFTHQDSDIIEEDFKFLCDLFWSNGDGLPAD 892 (978)
Q Consensus 862 ~Fs~~D~~miEeDl~~LKd~F~a~GeGLp~e 892 (978)
.|+.....-+.-|++.|...|- -++|-|..
T Consensus 613 kFS~~Ga~Qf~~D~~~L~~v~~-lp~~~~~~ 642 (706)
T 3fhn_A 613 KFNQNGLNQFLHDFKSLSSILS-LPSHATNY 642 (706)
T ss_dssp CBCHHHHHHHHHHHHHHHTTSC-CCTTCCCH
T ss_pred ccCHHHHHHHHHHHHHHHHHhc-CCCcchhh
Confidence 8999999999999999999998 55555433
No 6
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=23.54 E-value=34 Score=33.73 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.4
Q ss_pred CchhhhHHHHHHhHHhhhhhhccchHH
Q 002030 297 TSVIEEVDEVLELIKKTWEILGVNQML 323 (978)
Q Consensus 297 ~~v~eE~dE~leliK~TW~~LGI~~~l 323 (978)
-.+..|++++|.+..+.|.-||+|+.|
T Consensus 96 leLn~Eae~~L~l~~~LWdSL~Ln~~i 122 (158)
T 1nrj_A 96 LELNQETQQTLALVLKLWNSLHLSESI 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhcCccHHH
Confidence 346789999999999999999999988
No 7
>2ob9_A Tail assembly chaperone; bacteriophage HK97, morphogenesis; 2.30A {Enterobacteria phage HK97}
Probab=23.33 E-value=69 Score=30.96 Aligned_cols=38 Identities=16% Similarity=0.190 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchHHHHH
Q 002030 835 RTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEE 873 (978)
Q Consensus 835 r~~vv~~vmkAs~dafL~VLL~GGpsR~Fs~~D~~miEe 873 (978)
+...++ -++|-+-.|..||++-+.-|.|++.|.+.+-+
T Consensus 62 ~ek~~r-n~rA~~vlf~~vL~DE~g~rvFsd~D~~~v~~ 99 (130)
T 2ob9_A 62 SEKAHR-NLCADVVLFIDVLCDTDKQPVFSVDEEEQVRE 99 (130)
T ss_dssp HHHHHH-HHHHHHHHHHHHEECTTSCBSSCGGGHHHHHT
T ss_pred HHHHHH-hccccHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 444444 78899999999999999999999999877654
No 8
>1nnv_A Hypothetical protein HI1450; structure 2 function project, S2F, structural genomics, unknown function; NMR {Haemophilus influenzae} SCOP: d.17.7.1
Probab=23.30 E-value=36 Score=31.94 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=16.9
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 002030 45 NISDSELRETAYEILVGAC 63 (978)
Q Consensus 45 ~ls~~dlRetAYEi~~~~~ 63 (978)
-+|.||+-|+||+||+-=.
T Consensus 10 ~~t~De~id~AYDiFLE~A 28 (110)
T 1nnv_A 10 KLDPDTAIDIAYDIFLEMA 28 (110)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 6899999999999998644
No 9
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=19.85 E-value=67 Score=29.46 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHHHHHhhhCC
Q 002030 189 SQKEYEAWKKRIFKLLEAGLLMHP 212 (978)
Q Consensus 189 d~~ey~~Wq~Rql~vLE~gLl~hp 212 (978)
+..+|+.|.+.+++|||+..+-|-
T Consensus 67 ~a~e~vp~L~~~i~vle~~~~~~~ 90 (94)
T 3fx7_A 67 AAQEQIAWLKERIRVLEEDYLEHH 90 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHhHHHHHHHHHhHHHHHHhc
Confidence 578999999999999999998774
No 10
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=19.42 E-value=4.7e+02 Score=28.68 Aligned_cols=88 Identities=10% Similarity=0.128 Sum_probs=48.3
Q ss_pred chhhhHHHHHHHHHHhhccccCCCC--cccccccCCCchhhhhhHHHHHHHHHHHHHHHHHHHHhhhhccccccCCCCCC
Q 002030 538 LLAADKLEKNLVQIAVEDSVDSEDG--GKSIIQEMPPYEAEAAIGNLAKSWINIRVDRLKEWVCRNLQQEVWNARANKES 615 (978)
Q Consensus 538 l~aAd~LE~~L~~i~~e~s~~~~dg--gk~~~r~m~PyeiE~~~~~lV~~Wi~~~~~ki~ewV~raiq~E~W~P~s~~e~ 615 (978)
..|...||+++.++....+ .+| +...++...-. +|+.+...| ..|+-+.+ ..-+- +|.|......
T Consensus 150 e~ac~~le~~l~~~~~~~~---~~~l~a~~~f~~~r~~-Ae~~I~~~v-------~~KIDdfl-~la~y-DW~~~~~~~~ 216 (325)
T 2a2f_X 150 EKAGPFLDEFVCHMTNTER---SVSQTPSAMFHVARQD-AEKQVGLRI-------CSKIDEFF-ELSAY-DWLLVEPPGI 216 (325)
T ss_dssp HTTHHHHHHHHHHHHTCCC----------CCSCCCTTH-HHHHHHHHH-------HHHHHHHH-TTCCT-TCC----CCS
T ss_pred HHHHHHHHHHHHHHhCCCc---ccchhHHHHHHHHHHH-HHHHHHHHH-------HHHHHHHH-Hhccc-CCCCCCCCCC
Confidence 3566777888877643111 111 12222222221 344444333 34555555 22222 5999998888
Q ss_pred CCccHHHHHHHHHHHHHHHhcCC
Q 002030 616 IAPSAVEVLRTIDETMEAFFMLP 638 (978)
Q Consensus 616 hS~SVVDvFrmi~Etvd~ff~L~ 638 (978)
-|..+.|+..-++.+++.|-.||
T Consensus 217 ps~yi~dli~fL~~~f~sl~~LP 239 (325)
T 2a2f_X 217 ASAFITDMISYLKSTFDSFAFKL 239 (325)
T ss_dssp CCHHHHHHHHHHHHHHHTTTTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHcCC
Confidence 89999999999999999766666
Done!