Query 002030
Match_columns 978
No_of_seqs 141 out of 160
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 09:24:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002030.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002030hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bo9a_ a.65.1.1 (A:) Annexin 24.6 9 0.00066 30.9 0.6 26 947-973 20-45 (73)
2 d1noga_ a.25.2.2 (A:) Hypothet 21.8 1.8E+02 0.013 26.1 9.3 112 811-923 3-128 (149)
3 d1nnva_ d.17.7.1 (A:) Hypothet 21.6 19 0.0014 31.5 2.1 19 45-63 7-25 (107)
4 d1nrja_ d.110.4.4 (A:) Srx dom 13.1 39 0.0029 30.9 2.1 29 297-325 96-124 (155)
5 d1ffya1 a.27.1.1 (A:645-917) I 11.0 2.4E+02 0.017 26.9 7.7 93 727-846 30-127 (273)
6 d1lhta_ a.1.1.2 (A:) Myoglobin 11.0 4.5E+02 0.033 22.5 12.5 126 307-453 7-148 (153)
7 d1orja_ a.24.19.1 (A:) Flagell 10.1 94 0.0068 27.0 3.7 43 281-325 83-125 (126)
8 d1rtya_ a.25.2.2 (A:) Putative 9.8 2E+02 0.014 26.1 6.0 112 810-923 4-136 (161)
9 d2i9ca1 a.118.1.25 (A:3-123) H 7.7 1.2E+02 0.0089 26.7 3.3 87 435-528 9-95 (121)
10 d1qqra_ d.15.5.1 (A:) Streptok 7.5 67 0.0049 29.0 1.4 19 44-62 42-60 (138)
No 1
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.64 E-value=9 Score=30.89 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=19.2
Q ss_pred CCccceeeeccccCchhHHHHHHHHhc
Q 002030 947 TEPNTVLRVLCYRSDETAVKFLKKAYN 973 (978)
Q Consensus 947 ~d~nTiLRVLchR~D~~AskFLKk~y~ 973 (978)
+|..+|.||||+|+...-. -+++.|+
T Consensus 20 tde~~li~Il~~rs~~~l~-~i~~~Y~ 45 (73)
T d1bo9a_ 20 VDEATIIDILTKRNNAQRQ-QIKAAYL 45 (73)
T ss_dssp CCSSSHHHHHHHSCSTTHH-HHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHH-HHHHHHH
Confidence 7889999999999776533 3555553
No 2
>d1noga_ a.25.2.2 (A:) Hypothetical protein Ta0546 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=21.75 E-value=1.8e+02 Score=26.15 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=59.5
Q ss_pred cchhh--HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccchHHHHHHHHHHHH-------h
Q 002030 811 RIEPF--LQELEHYLEIISSTVHDRVRTRVITDIMKASFEGFLLVLLAGGPSRAFTHQDSDIIEEDFKFLCD-------L 881 (978)
Q Consensus 811 RI~p~--L~~Ld~~L~~l~~~l~d~~r~~vv~~vmkAs~dafL~VLL~GGpsR~Fs~~D~~miEeDl~~LKd-------~ 881 (978)
||+.. +++|+..++.......+..-...+..|-+..|+--=-+- ..+..+.++.++++.+|++++.+.+ |
T Consensus 3 riea~GtvDELns~iGla~~~~~~~~~~~~L~~IQ~~Lf~lga~lA-~~~~~~~i~~~~v~~LE~~id~~~~~lp~l~~F 81 (149)
T d1noga_ 3 VVEVQGTIDELNSFIGYALVLSRWDDIRNDLFRIQNDLFVLGEDVS-TGGKGRTVTREMIDYLEARVKEMKAEIGKIELF 81 (149)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-TTTSSSCCCHHHHHHHHHHHHHHHHHHCCCCSC
T ss_pred EEEEeeeHHHHHHHHHHHHHccCchhHHHHHHHHHHHHHHhhHHHh-cccccccccHHHHHHHHHHHHHHHhhhccccce
Confidence 45444 778888888765544333223344455555443221111 2345577899999999987776654 6
Q ss_pred cccCCCCC--cHHHHHHHHHhHhhhc-cccccC--hHHHHHHHHHHh
Q 002030 882 FWSNGDGL--PADLIDKFSTSVRSIL-PLYHND--TESLIEEFKRLT 923 (978)
Q Consensus 882 F~a~GeGL--p~e~Ve~~a~~v~~Vl-~L~~~~--Te~LIe~f~~a~ 923 (978)
...+|... -..+....++++++-+ .|.... .+.++.=.++++
T Consensus 82 iLPGG~~~~a~lH~aRtv~RRaER~lv~l~~~~~v~~~~~~YlNRLS 128 (149)
T d1noga_ 82 VVPGGSVESASLHMARAVSRRLERRIVAASKLTEINKNVLIYANRLS 128 (149)
T ss_dssp BCSCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred eecCCchHHHHHHHHHhhhhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 66766433 2222233455554433 343321 344444345665
No 3
>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus influenzae [TaxId: 727]}
Probab=21.56 E-value=19 Score=31.48 Aligned_cols=19 Identities=16% Similarity=0.387 Sum_probs=16.7
Q ss_pred CCCchhHHHHHHHHHHHHH
Q 002030 45 NISDSELRETAYEILVGAC 63 (978)
Q Consensus 45 ~ls~~dlRetAYEi~~~~~ 63 (978)
.+|.||+-++||+||+-=.
T Consensus 7 ~~t~De~id~AYDiFLElA 25 (107)
T d1nnva_ 7 KLDPDTAIDIAYDIFLEMA 25 (107)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhh
Confidence 6899999999999998643
No 4
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=13.07 E-value=39 Score=30.86 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=25.0
Q ss_pred CchhhhHHHHHHhHHhhhhhhccchHHHH
Q 002030 297 TSVIEEVDEVLELIKKTWEILGVNQMLHN 325 (978)
Q Consensus 297 ~~v~eE~dE~leliK~TW~~LGI~~~lHn 325 (978)
-.+..|++++|.+--+.|.-||+|+.|-.
T Consensus 96 leLN~EAe~vl~l~~~LWdSL~Ln~~il~ 124 (155)
T d1nrja_ 96 LELNQETQQTLALVLKLWNSLHLSESILK 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhcCccHHHHH
Confidence 34678999999999999999999987643
No 5
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=11.05 E-value=2.4e+02 Score=26.90 Aligned_cols=93 Identities=13% Similarity=0.170 Sum_probs=61.5
Q ss_pred cccHH-HHHHHHHHHHHHHHhhhccCCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhHh----h
Q 002030 727 INTFQ-HIRKELEVLEKKTVHQLRSSHSTRTDNITNGIEKRFELSAASSVEAIQQLSEAIAYKVIFHDLSHVLWD----G 801 (978)
Q Consensus 727 LNnLe-yil~qLd~LEk~I~~~w~~~~S~~~~~~~~~~~~~F~~ar~sl~~ai~~l~e~ia~rvVF~Dl~~~l~d----~ 801 (978)
|+.|+ ||+.+|+.+.+.+...+. ...|. .+++.|-+|+-. |+++.+++ .
T Consensus 30 l~~lD~wiL~~l~~~~~~v~~~y~--------------~y~f~-------~~~~~l~~F~~~-----~ls~~Y~~~~Kdr 83 (273)
T d1ffya1 30 LLEVDRYLLNRLREFTASTINNYE--------------NFDYL-------NIYQEVQNFINV-----ELSNFYLDYGKDI 83 (273)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH--------------TTCHH-------HHHHHHHHHHHC-----CCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH--------------hcccc-------chHHHHHhhhhc-----cchHHHHhhcccc
Confidence 45565 899999999888766542 23443 344444445332 56665555 4
Q ss_pred hccCccccccchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Q 002030 802 LYVGEVSSSRIEPFLQELEHYLEIISSTVHDRVRTRVITDIMKAS 846 (978)
Q Consensus 802 LY~g~V~~~RI~p~L~~Ld~~L~~l~~~l~d~~r~~vv~~vmkAs 846 (978)
||.++..+..-+.....|.++|..+...++.-+ +-+.-++|+..
T Consensus 84 ly~~~~ds~~r~~~~~~l~~il~~l~~~laPil-Pf~~Eei~~~~ 127 (273)
T d1ffya1 84 LYIEQRDSHIRRSMQTVLYQILVDMTKLLAPIL-VHTAEEVWSHT 127 (273)
T ss_dssp HTTSCTTCHHHHHHHHHHHHHHHHHHHHHTTTS-HHHHHHHHTTS
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 898887666656677778888888877777655 77777888764
No 6
>d1lhta_ a.1.1.2 (A:) Myoglobin {Loggerhead sea turtle (Caretta caretta) [TaxId: 8467]}
Probab=10.97 E-value=4.5e+02 Score=22.49 Aligned_cols=126 Identities=12% Similarity=0.113 Sum_probs=62.2
Q ss_pred HHhHHhhhhhhccchHHHHHHHHHHHHHHH-------hhcCcc--------chhHHHHHHHHHHHHHHHhhhhcCcchHH
Q 002030 307 LELIKKTWEILGVNQMLHNLCFGWILFHRY-------VSTGQV--------ESDLLFAANNLLMEIEKDAKAAKDADYSK 371 (978)
Q Consensus 307 leliK~TW~~LGI~~~lHn~cf~WvlF~qy-------v~Tgq~--------e~~LL~aa~~~l~ev~~dak~~~d~~y~~ 371 (978)
-++|++||..+.=+..=+-..+-=-||..| -..+.. .+++..|+...+.-+..-.....|
T Consensus 7 ~~~I~~sW~~v~~~~~~~g~~~f~rlF~~~P~~~~~F~~~~~~~~~~~l~~~~~~~~H~~~v~~~l~~~i~~ld~----- 81 (153)
T d1lhta_ 7 WNHVLGIWAKVEPDLSAHGQEVIIRLFQLHPETQERFAKFKNLTTIDALKSSEEVKKHGTTVLTALGRILKQKNN----- 81 (153)
T ss_dssp HHHHHHHHHHHGGGHHHHHHHHHHHHHHHCGGGGGGCGGGTTCCSHHHHHHCHHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHChHHHHHhhhccccCcHHHHhcCHHHHHHHHHHHHHHHHhhhcccc-----
Confidence 468999999986654444333333445554 122211 244666666666544332222222
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCchhhHhHHHHHHHH-HhhhhhcchhhhhccccCccccchhhHHHHHHhhHHHH
Q 002030 372 ILSSILNTILDWAGQRLRDYHDIFHDDNIDSLETVVSLGVL-SATILVEGISQEYRGKKNQVDVAHDRVDTYIRSSLRTA 450 (978)
Q Consensus 372 ~l~s~L~~i~~W~ekrL~dYH~~f~~~~~~~me~~~sl~~~-a~kil~ed~~~~~~~~~~~~~~~~~rid~yI~sS~~~a 450 (978)
|..+ -++|..-|.....-....++.+-.+-+. -++.++.+-+. ++..+-+++=.+|...|...
T Consensus 82 -l~~~--------l~~Lg~~H~~~~~v~~~~f~~~~~~ll~~l~~~lg~~~t~-------e~~~AW~k~~~~i~~~l~~~ 145 (153)
T d1lhta_ 82 -HEQE--------LKPLAESHATKHKIPVKYLEFICEIIVKVIAEKHPSDFGA-------DSQAAMKKALELFRNDMASK 145 (153)
T ss_dssp -CHHH--------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHCTTTCCH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred -hHHH--------HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHcCccCCH-------HHHHHHHHHHHHHHHHHHHH
Confidence 2222 2567888865332222335554443332 23445543221 12234566666677777666
Q ss_pred HHH
Q 002030 451 FAQ 453 (978)
Q Consensus 451 f~~ 453 (978)
|++
T Consensus 146 y~e 148 (153)
T d1lhta_ 146 YKE 148 (153)
T ss_dssp HHT
T ss_pred HHH
Confidence 654
No 7
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=10.11 E-value=94 Score=27.05 Aligned_cols=43 Identities=23% Similarity=0.581 Sum_probs=28.7
Q ss_pred HHHHHHHHhhhccCCCCchhhhHHHHHHhHHhhhhhhccchHHHH
Q 002030 281 RIYRILLEACFDVNEPTSVIEEVDEVLELIKKTWEILGVNQMLHN 325 (978)
Q Consensus 281 ~LYe~LL~~~FD~~de~~v~eE~dE~leliK~TW~~LGI~~~lHn 325 (978)
.||.-+...+.......--++|+-++++-|+.+|... .+.+||
T Consensus 83 ~lY~~~~~~L~~a~~~~~~i~e~~~il~~l~eaW~~i--~~~~~~ 125 (126)
T d1orja_ 83 TIYTIILNTLVKVDKTKEELQKILEILKDLREAWEEV--KKKVHH 125 (126)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH--HHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH--HHHhhC
Confidence 4666666666665444445788888888899999754 344443
No 8
>d1rtya_ a.25.2.2 (A:) Putative ATP-binding cobalamin adenosyltransferase YvqK {Bacillus subtilis [TaxId: 1423]}
Probab=9.78 E-value=2e+02 Score=26.12 Aligned_cols=112 Identities=14% Similarity=0.227 Sum_probs=57.1
Q ss_pred ccchhh--HHHHHHHHHHHHhhhhhhhh----HHHHHHHHHHHHHHHHHHHhCCC---CCCCCCccchHHHHHHHHHH--
Q 002030 810 SRIEPF--LQELEHYLEIISSTVHDRVR----TRVITDIMKASFEGFLLVLLAGG---PSRAFTHQDSDIIEEDFKFL-- 878 (978)
Q Consensus 810 ~RI~p~--L~~Ld~~L~~l~~~l~d~~r----~~vv~~vmkAs~dafL~VLL~GG---psR~Fs~~D~~miEeDl~~L-- 878 (978)
.||+.. +++|+..|+.....+.+... ...+..|-+..|+--- -|+.. +...++.++++.+|+.+..+
T Consensus 4 ~riea~GtvDELns~iGla~~~~~~~~~~~~~~~~L~~IQ~~Lf~ig~--~la~~~~~~~~~i~~~~v~~LE~~ID~~~~ 81 (161)
T d1rtya_ 4 LRVESYGTIDELNSFIGLALAELSGQPGFEDLTAELLTIQHELFDCGG--DLAIVTERKDYKLTEESVSFLETRIDAYTA 81 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHH--HHHCCC---CCCCCHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHhccCCCCcchHHHHHHHHHHHHHHHHH--HHCCCccccccccCHHHHHHHHHHHHHHHh
Confidence 355544 77888888877766654221 2223333333332111 13322 23457889999999988774
Q ss_pred -----HHhcccCCCCC--cHHHHHHHHHhHhhhc-cccccC--hHHHHHHHHHHh
Q 002030 879 -----CDLFWSNGDGL--PADLIDKFSTSVRSIL-PLYHND--TESLIEEFKRLT 923 (978)
Q Consensus 879 -----Kd~F~a~GeGL--p~e~Ve~~a~~v~~Vl-~L~~~~--Te~LIe~f~~a~ 923 (978)
+.|...+|-.. -..+....++++++.+ .|...+ .+.++.=.++++
T Consensus 82 ~lp~l~~FILPGGs~~~A~lh~aRtv~RRaER~~v~l~~~~~v~~~~~~YlNRLS 136 (161)
T d1rtya_ 82 EAPELKKFILPGGSKCASLLHIARTITRRAERRVVALMKSEEIHETVLRYLNRLS 136 (161)
T ss_dssp HSCCCCSCBCSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hhccccceecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 45666666433 2222223444444333 343322 345555456666
No 9
>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=7.69 E-value=1.2e+02 Score=26.69 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=56.7
Q ss_pred chhhHHHHHHhhHHHHHHHHHhhhccccccccCCCCchHHHHHHHHHHHHHHhhhhhccccchhhhcchhHHHHHHHHHH
Q 002030 435 AHDRVDTYIRSSLRTAFAQKLKKVNSSKKLSKNQPNHLPVLSILAQDVTELAFDEKTIFSPILKRWHPLAAGVAVATLHS 514 (978)
Q Consensus 435 ~~~rid~yI~sS~~~af~~~~e~~~~~~~~~~~~~~~~~~L~~LA~~~~~la~~e~~~fSPiL~~whp~A~~vAa~~Lh~ 514 (978)
..+.|+.|+.-|+.. ...++..+... ..-.-..|..+..+++..--.+++.+.|+|+.=||....-||..+-.
T Consensus 9 ~~~Lv~~F~~~~i~q--~~A~~~~d~~~-----~NR~~~kl~~~~~eLk~~~g~~R~aLl~Ll~h~n~~VRl~AA~~tL~ 81 (121)
T d2i9ca1 9 TQDLVALFAKVTVEQ--DDALLGNQISR-----FNRLFGVMAEIADELKARDGDQRTALLSLFEYPNMQVRLQAAKLTLA 81 (121)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHTTCHHH-----HHHHHHHHHHHHHHHHHSTTCGGGGGGGGGGSSCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHH--HHHHHhccHHH-----HHHHHHHHHHHHHHHHhcCccHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 457788888877765 34555555442 22233556667777776655788899999988888888777755444
Q ss_pred HHHhhHHHHHhhhh
Q 002030 515 CYGNELRQFVSGIT 528 (978)
Q Consensus 515 ~Yg~~Lk~~L~~v~ 528 (978)
+.-..-.+.|+++.
T Consensus 82 ~~p~~A~~vL~~ia 95 (121)
T d2i9ca1 82 VAPVKAREQLEAIV 95 (121)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHH
Confidence 44455555555553
No 10
>d1qqra_ d.15.5.1 (A:) Streptokinase {Streptococcus equisimilis [TaxId: 119602]}
Probab=7.48 E-value=67 Score=29.02 Aligned_cols=19 Identities=32% Similarity=0.294 Sum_probs=17.2
Q ss_pred CCCCchhHHHHHHHHHHHH
Q 002030 44 PNISDSELRETAYEILVGA 62 (978)
Q Consensus 44 ~~ls~~dlRetAYEi~~~~ 62 (978)
--+|+++|++.|+|+|.-+
T Consensus 42 d~Its~EL~~~Aq~~f~~t 60 (138)
T d1qqra_ 42 DTITSQELLAQAQSILNKN 60 (138)
T ss_dssp CEEEHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhc
Confidence 3589999999999999997
Done!