BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002037
(977 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 30/158 (18%)
Query: 166 LKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMESTNY-VQVEE 224
L++ R L+ILDD+W L C+I+LT+R K V D + Y V VE
Sbjct: 238 LRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVES 290
Query: 225 LTDEDR------LILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVR 278
+++ L + KKA LPE A ++++C P + +IG LR P R
Sbjct: 291 SLGKEKGLEILSLFVNMKKADLPE-------QAHSIIKECKGSPLVVSLIGALLRDFPNR 343
Query: 279 EW--------NEAIKRKKASTPINVEGIPEEVVLCVAL 308
W N+ KR + S+ + E + E + + V +
Sbjct: 344 -WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 380
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 30/158 (18%)
Query: 166 LKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMESTNY-VQVEE 224
L++ R L+ILDD+W L C+I+LT+R K V D + Y V VE
Sbjct: 232 LRKHPRSLLILDDVWDSWVLKAFD-------SQCQILLTTRDKSVTDSVMGPKYVVPVES 284
Query: 225 LTDEDR------LILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVR 278
+++ L + KKA LPE A ++++C P + +IG LR P R
Sbjct: 285 SLGKEKGLEILSLFVNMKKADLPE-------QAHSIIKECKGSPLVVSLIGALLRDFPNR 337
Query: 279 EW--------NEAIKRKKASTPINVEGIPEEVVLCVAL 308
W N+ KR + S+ + E + E + + V +
Sbjct: 338 -WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 97/240 (40%), Gaps = 43/240 (17%)
Query: 97 IGVYGSGGIGKTTLMKQVMKQEIPFDK--------VIFVRVTQTPDVKRVQDEIARF--- 145
+ +YG G GK+ L + ++ + V + ++ + ++Q+ R
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 209
Query: 146 --LNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIIL 203
+ L ++E + L++ R L+ILDD+W L C+I+L
Sbjct: 210 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQCQILL 262
Query: 204 TSRFKEVCDE-MESTNYVQVEELTDEDR------LILFKKKAGLPEGTKAFDRAAEEVVR 256
T+R K V D M + V VE ++ L + KK LP A +++
Sbjct: 263 TTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPA-------EAHSIIK 315
Query: 257 QCGKLPNAIVIIGTALRHKPVREW--------NEAIKRKKASTPINVEGIPEEVVLCVAL 308
+C P + +IG LR P R W N+ KR + S+ + E + E + + V +
Sbjct: 316 ECKGSPLVVSLIGALLRDFPNR-WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 96/240 (40%), Gaps = 43/240 (17%)
Query: 97 IGVYGSGGIGKTTLMKQVMKQEIPFDK--------VIFVRVTQTPDVKRVQDEIARF--- 145
+ +YG G GK+ L + ++ + V + ++ + ++Q+ R
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQE 216
Query: 146 --LNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIIL 203
+ L ++E + L++ R L+ILDD+W L C+I+L
Sbjct: 217 ESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFD-------NQCQILL 269
Query: 204 TSRFKEVCDE-MESTNYVQVEELTDEDR------LILFKKKAGLPEGTKAFDRAAEEVVR 256
T+ K V D M + V VE ++ L + KK LP A +++
Sbjct: 270 TTSDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPA-------EAHSIIK 322
Query: 257 QCGKLPNAIVIIGTALRHKPVREW--------NEAIKRKKASTPINVEGIPEEVVLCVAL 308
+C P + +IG LR P R W N+ KR + S+ + E + E + + V +
Sbjct: 323 ECKGSPLVVSLIGALLRDFPNR-WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 381
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 488 LEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSXXXXXXXXXXXXX 547
L +R L L L+D S ++E L LIL G+++ LPNG+
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 548 QVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRL 595
Q +P V KL+ L LY+ ++ +++ G F ++ +LTRL
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHN----QLQSLPKGV---FDKLTNLTRL 162
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 417 EDLQNCEKLSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLS 474
+ L N ++L L++ + +LPD K LT L+L +N +P F+ + LDL
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLD 165
Query: 475 STNISSLAPSL-PCLEKLRSLHLENTHL 501
+ + SL + L +L+ L L + L
Sbjct: 166 NNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501
P+L +L+L NN DI ++ L L IS + P L CL KL++L+L H+
Sbjct: 129 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LACLTKLQNLYLSKNHI 185
Query: 502 NDASLIREFGELEVLILKGSRIVELP 527
+D + L+VL L + P
Sbjct: 186 SDLRALCGLKNLDVLELFSQEALNKP 211
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H+
Sbjct: 152 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 208
Query: 502 NDASLIREFGELEVLILKGSRIVELP 527
+D + L+VL L + P
Sbjct: 209 SDLRALAGLKNLDVLELFSQECLNKP 234
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 488 LEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSXXXXXXXXXXXXX 547
L +R L L L+D S ++E L LIL G+++ LPNG+
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQL 121
Query: 548 QVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLY 599
Q +P V KL+ L L + ++ +++ G F ++ +LT L + Y
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHN----QLQSLPKGV---FDKLTNLTELDLSY 166
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H+
Sbjct: 152 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 208
Query: 502 NDASLIREFGELEVLILKGSRIVELP 527
+D + L+VL L + P
Sbjct: 209 SDLRALAGLKNLDVLELFSQECLNKP 234
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Query: 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H+
Sbjct: 152 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 208
Query: 502 NDASLIREFGELEVLILKGSRIVELP 527
+D + L+VL L + P
Sbjct: 209 SDLRALAGLKNLDVLELFSQECLNKP 234
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H+
Sbjct: 131 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 187
Query: 502 NDASLIREFGELEVLIL 518
+D + L+VL L
Sbjct: 188 SDLRALAGLKNLDVLEL 204
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H+
Sbjct: 134 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 190
Query: 502 NDASLIREFGELEVLIL 518
+D + L+VL L
Sbjct: 191 SDLRALAGLKNLDVLEL 207
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 441 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 187
Query: 501 LNDASLIREFGELEVL 516
++D + L+VL
Sbjct: 188 ISDLRALAGLKNLDVL 203
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 8/105 (7%)
Query: 425 LSLMDGNVTALPDQP--KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTN----I 478
L L D +T +P Q +L L+L+NNP IP+ F ++ LDL I
Sbjct: 88 LELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYI 147
Query: 479 SSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRI 523
S A L LR L+L +L D + LE L L G+R+
Sbjct: 148 SEAA--FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 444 LTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS--LPCLEKLRSLHLENTHL 501
L TL L NN A +P F+H ++ L L + SL PS L KL+ L L L
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQL 143
Query: 502 ND--ASLIREFGELEVLILKGSRIVELPNG 529
A + L+ L L +++ +P+G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 37.0 bits (84), Expect = 0.055, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query: 444 LTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS--LPCLEKLRSLHLENTHL 501
L TL L NN A +P F+H ++ L L + SL PS L KL+ L L L
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQL 143
Query: 502 ND--ASLIREFGELEVLILKGSRIVELPNG 529
A + L+ L L +++ +P+G
Sbjct: 144 QSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 441 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H
Sbjct: 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 189
Query: 501 LNDASLIREFGELEVL 516
++D + L+VL
Sbjct: 190 ISDLRALAGLKNLDVL 205
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H+
Sbjct: 129 PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI 185
Query: 502 NDASLIREFGELEVL 516
+D + L+VL
Sbjct: 186 SDLRALAGLKNLDVL 200
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 37.0 bits (84), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 441 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500
P+L +L+L NN DI ++ L L I + P L L KL++L+L H
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP-LARLTKLQNLYLSKNH 187
Query: 501 LNDASLIREFGELEVL 516
++D +R L+VL
Sbjct: 188 ISDLRALRGLKNLDVL 203
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 37.0 bits (84), Expect = 0.058, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 26/98 (26%)
Query: 433 TALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLR 492
T LP+ +T + L+ N IP F ++++ +DLS+ IS LAP + LR
Sbjct: 28 TNLPET-----ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD--AFQGLR 80
Query: 493 SLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGI 530
SL+ L+L G++I ELP +
Sbjct: 81 SLN-------------------SLVLYGNKITELPKSL 99
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 37.0 bits (84), Expect = 0.059, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 26/98 (26%)
Query: 433 TALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLR 492
T LP+ +T + L+ N IP F ++++ +DLS+ IS LAP + LR
Sbjct: 28 TNLPET-----ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD--AFQGLR 80
Query: 493 SLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGI 530
SL+ L+L G++I ELP +
Sbjct: 81 SLN-------------------SLVLYGNKITELPKSL 99
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 49/111 (44%), Gaps = 8/111 (7%)
Query: 419 LQNCEKLSLMDGNVTALPDQP--KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSST 476
L + L L D +T +P Q +L L+L+NNP IP+ F ++ LDL
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGEL 141
Query: 477 N----ISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRI 523
IS A L LR L+L +L D + LE L L G+R+
Sbjct: 142 KRLEYISEAA--FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRL 190
>pdb|2GZA|A Chain A, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|B Chain B, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
pdb|2GZA|C Chain C, Crystal Structure Of The Virb11 Atpase From The Brucella
Suis Type Iv Secretion System In Complex With Sulphate
Length = 361
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 76 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDK 123
AL+ M L+ +I V G G GKTTLMK +M QEIPFD+
Sbjct: 157 ALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALM-QEIPFDQ 203
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 36.6 bits (83), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 441 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500
P+L +L+L NN DI ++ L L IS + P L L KL++L+L H
Sbjct: 153 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH 209
Query: 501 LNDASLIREFGELEVL 516
++D + L+VL
Sbjct: 210 ISDLRALAGLKNLDVL 225
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 424 KLSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL 481
KLSL + +LPD K +LT L+L N +PN F+ ++K L L + + S+
Sbjct: 56 KLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
Query: 482 APSLPCLEKLRSLHLENTHLN--DASLIR 508
+ ++L SL H N D S R
Sbjct: 116 PDGI--FDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|2EPK|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
Length = 627
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 20/146 (13%)
Query: 671 QDIGEIDVQGFTGLMCMHLRACSMQRI------FHSNFYPTVQILEELHVEYCYSLKEVF 724
+D EI+ Q + G +Q I F +F P +Q L L + +KEV
Sbjct: 124 EDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDXSFVPCIQTLAHLSAFVKWGIKEVQ 183
Query: 725 CLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGN-HSVVYLKTLKLMKVKDCGKLRYLFSR 783
L D+E +++L+G KV + +G + +L T K+ D L L
Sbjct: 184 ELRDVE----------DILLIGEEKVYDLIEGXFQTXAHLHTRKINIGXDEAHLVGLGRY 233
Query: 784 TLAEGLGNLEDLSILKCDLMEEIVSV 809
+ G N S+L C +E ++ +
Sbjct: 234 LIKHGFQN---RSLLXCQHLERVLDI 256
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 441 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS----SLAPSL 485
P+LTTL + NN I + F+ T ++NL LSS ++ SL PSL
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 194
>pdb|2EPL|X Chain X, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPM|X Chain X, N-Acetyl-B-D-Glucoasminidase (Gcna) From Stretococcus
Gordonii
pdb|2EPN|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPN|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPO|A Chain A, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
pdb|2EPO|B Chain B, N-Acetyl-B-D-Glucosaminidase (Gcna) From Streptococcus
Gordonii
Length = 627
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 20/147 (13%)
Query: 670 LQDIGEIDVQGFTGLMCMHLRACSMQRI------FHSNFYPTVQILEELHVEYCYSLKEV 723
++D EI+ Q + G +Q I F +F P +Q L L + +KEV
Sbjct: 123 MEDTYEIENQPYFGYFRGRYTVAELQEIEDYAADFDMSFVPCIQTLAHLSAFVKWGIKEV 182
Query: 724 FCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGN-HSVVYLKTLKLMKVKDCGKLRYLFS 782
L D+E +++L+G KV + +G ++ +L T K+ D L L
Sbjct: 183 QELRDVE----------DILLIGEEKVYDLIEGMFQTMAHLHTRKINIGMDEAHLVGLGR 232
Query: 783 RTLAEGLGNLEDLSILKCDLMEEIVSV 809
+ G N S+L C +E ++ +
Sbjct: 233 YLIKHGFQN---RSLLMCQHLERVLDI 256
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 61/155 (39%), Gaps = 4/155 (2%)
Query: 419 LQNCEKLSLMDGNVTALPDQP--KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSST 476
L N L L D +T +P+ +L L+L+NNP IP+ F ++ LDL
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170
Query: 477 NISSLAP--SLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVS 534
S + L LR L+L +L + + +L+ L L G+ + + G
Sbjct: 171 KRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL 230
Query: 535 XXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNS 569
QVI N L L E+ + ++
Sbjct: 231 MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.70, Method: Composition-based stats.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 425 LSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLA 482
L L ++ +LP+ + LT L+L N +PN F + L+LS+ + SL
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 483 PSL-PCLEKLRSLHLENTHLNDA--SLIREFGELEVLILKGSRIVELPNGI 530
+ L +L+ L L L + + +L+ L L +++ +P+G+
Sbjct: 93 NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.1 bits (74), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS----SLAPSL 485
P+LTTL + NN I + F+ T ++NL LSS ++ SL PSL
Sbjct: 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL 188
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 66 PTPEFVPLKSALEVIKSVMKLLK--DNSISINIIGVYGSGGIGKTTLMKQVM 115
P PEF L +A E++++ +K++ IG++G G+GKT L+++++
Sbjct: 114 PAPEFEELSTADEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELI 165
>pdb|1SKY|E Chain E, Crystal Structure Of The Nucleotide Free Alpha3beta3
Sub-Complex Of F1-Atpase From The Thermophilic Bacillus
Ps3
Length = 473
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 66 PTPEFVPLKSALEVIKSVMKL--LKDNSISINIIGVYGSGGIGKTTLMKQVM 115
P P+F L + +E++++ +K+ L I IG++G G+GKT L+++++
Sbjct: 121 PAPKFEELATEVEILETGIKVVDLLAPYIKGGKIGLFGGAGVGKTVLIQELI 172
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 52/200 (26%)
Query: 449 LQNNPF--ADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLN--DA 504
L NP + I N F+ +++ + ++ TNI+++ LP L LHL+ + DA
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDA 209
Query: 505 SLIREFGELEVLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEEL 564
+ ++ L L L + I + NG ++ L EL
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNG------------------------SLANTPHLREL 245
Query: 565 YVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVL-SVDFDGPWTNLKR-- 621
++ N+ ++ + G +A + V+Y+H +N + S DF P N K+
Sbjct: 246 HLNNN----KLVKVPGG-------LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294
Query: 622 ------FRVCVNDDYWEIAP 635
F V YWEI P
Sbjct: 295 YSGVSLFSNPV--QYWEIQP 312
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 79/200 (39%), Gaps = 52/200 (26%)
Query: 449 LQNNPF--ADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLN--DA 504
L NP + I N F+ +++ + ++ TNI+++ LP L LHL+ + DA
Sbjct: 152 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDA 209
Query: 505 SLIREFGELEVLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEEL 564
+ ++ L L L + I + NG ++ L EL
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNG------------------------SLANTPHLREL 245
Query: 565 YVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVL-SVDFDGPWTNLKR-- 621
++ N+ ++ + G +A + V+Y+H +N + S DF P N K+
Sbjct: 246 HLNNN----KLVKVPGG-------LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKAS 294
Query: 622 ------FRVCVNDDYWEIAP 635
F V YWEI P
Sbjct: 295 YSGVSLFSNPV--QYWEIQP 312
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 415 PREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIK---- 469
P +L E+L + V+ + K L +L NN +DI P + E+
Sbjct: 171 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 230
Query: 470 ---------------NLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELE 514
+LDL++ IS+LAP L L KL L L +++ S + L
Sbjct: 231 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALT 289
Query: 515 VLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNSFGDWE 574
L L +++ + I +S + + +S L++L+ L+ N+
Sbjct: 290 NLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANN----- 340
Query: 575 VEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRF-RVCVNDDYWE 632
+ S+V+SL LT + ++ + ++ + P NL R ++ +ND W
Sbjct: 341 ----------KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWT 387
Query: 633 IAP 635
AP
Sbjct: 388 NAP 390
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 408 PGMKKGWPREDLQNCEKLSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFF 462
PG+ P+ EKLSL + N+T LP L TL LQ N IP FF
Sbjct: 141 PGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 471 LDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVELPN 528
LDLS + SL L L L + L L +R GEL+ L LKG+ + LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 529 GIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEEL 564
G+ T + +P +++ L L+ L
Sbjct: 142 GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 2/96 (2%)
Query: 471 LDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVELPN 528
LDLS + SL L L L + L L +R GEL+ L LKG+ + LP
Sbjct: 82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP 141
Query: 529 GIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEEL 564
G+ T + +P +++ L L+ L
Sbjct: 142 GLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 415 PREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIK---- 469
P +L E+L + V+ + K L +L NN +DI P + E+
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 226
Query: 470 ---------------NLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELE 514
+LDL++ IS+LAP L L KL L L +++ S + L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALT 285
Query: 515 VLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNSFGDWE 574
L L +++ + I +S + + +S L++L+ L+ N+
Sbjct: 286 NLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNN----- 336
Query: 575 VEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRF-RVCVNDDYWE 632
+ S+V+SL LT + ++ + ++ + P NL R ++ +ND W
Sbjct: 337 ----------KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWT 383
Query: 633 IAP 635
AP
Sbjct: 384 NAP 386
>pdb|6FAB|H Chain H, Three-Dimensional Structure Of Murine Anti-P-
Azophenylarsonate Fab 36-71. 1. X-Ray Crystallography,
Site-Directed Mutagenesis, And Modeling Of The Complex
With Hapten
Length = 222
Score = 31.6 bits (70), Expect = 2.1, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 190 IPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFD 248
I Y E+ KG K LT D+ ST Y+Q+ LT ED + F ++ G+ FD
Sbjct: 58 IAYNEKFKG-KTTLT------VDKSSSTAYMQLRSLTSEDSAVYFCARSEYYGGSYKFD 109
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Query: 446 TLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDAS 505
+L LQ + F+DI + F+ +++ LDL++T++ L + L L+ L L H +
Sbjct: 255 SLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLC 314
Query: 506 LIR--EFGELEVLILKGSRIVELPNGIGTV 533
I F L L ++G+ + +L G+G +
Sbjct: 315 QISAANFPSLTHLYIRGN-VKKLHLGVGCL 343
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 44/209 (21%)
Query: 679 QGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEV---FCLEDIEGEQAG 735
Q F GL + L ++ + S ++ L EL + C L E+ D GE G
Sbjct: 124 QQFAGLETLTLARNPLRALPAS--IASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181
Query: 736 LKRLRELVLVGLPKVLTIWKG----NHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGN 791
L L+ L L W G S+ L+ LK +K+++ L L L
Sbjct: 182 LVNLQSLRLE--------WTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAI--HHLPK 230
Query: 792 LEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVL 851
LE+L + C + + LK+L++ C+ + L
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAP--------------------LKRLILKDCSNL---L 267
Query: 852 SLT-NAHNLKQLEELTVASCNHMERIITV 879
+L + H L QLE+L + C ++ R+ ++
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 415 PREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIK---- 469
P +L E+L + V+ + K L +L NN +DI P + E+
Sbjct: 168 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 227
Query: 470 ---------------NLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELE 514
+LDL++ IS+LAP L L KL L L +++ S + L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 515 VLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNSFGDWE 574
L L +++ + I +S + + +S L++L+ L+ N+
Sbjct: 287 NLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNN----- 337
Query: 575 VEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRF-RVCVNDDYWE 632
+ S+V+SL LT + ++ + ++ + P NL R ++ +ND W
Sbjct: 338 ----------KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWT 384
Query: 633 IAP 635
AP
Sbjct: 385 NAP 387
>pdb|1Y9M|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P212121
pdb|1Y9G|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori Complexed With Fructose
pdb|1Y4W|A Chain A, Crystal Structure Of Exo-Inulinase From Aspergillus
Awamori In Spacegroup P21
Length = 518
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 920 PSLEELKVWDCPKLMKLPLDTRSAPK 945
P + VW+CP L+KLPLD+ ++ K
Sbjct: 213 PYNAQGGVWECPGLVKLPLDSGNSTK 238
>pdb|2DMC|A Chain A, Solution Structure Of The 18th Filamin Domain From Human
Filamin-B
Length = 116
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 471 LDLSSTNISSLAPSL--------PCLEKLRSLHLENTHLNDASLIREFGELEVLILK-GS 521
LD+S T++SSL S+ PCL K L N H+ + + RE GE V I K G+
Sbjct: 37 LDISETDLSSLTASIKAPSGRDEPCLLK----RLPNNHIGISFIPREVGEHLVSIKKNGN 92
Query: 522 RIVELPNGIGTV 533
+ P I V
Sbjct: 93 HVANSPVSIMVV 104
>pdb|1BBJ|H Chain H, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
pdb|1BBJ|B Chain B, Crystal Structure Of A Chimeric Fab' Fragment Of An
Antibody Binding Tumour Cells
Length = 212
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Query: 190 IPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILFKKKA 238
I Y E+ KG K LT+ D+ ST Y+Q+ LT ED + F K++
Sbjct: 58 IKYNEKFKG-KATLTA------DKSSSTAYMQLNSLTSEDSAVYFCKRS 99
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 99 VYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLR 158
++G G+GKTTL V+ E+ + +RVT P +++ D A N+ EGD+
Sbjct: 43 LFGPPGLGKTTL-AHVIAHELGVN----LRVTSGPAIEKPGDLAAILANSLEEGDI---- 93
Query: 159 AAFLSE--RLKRQ 169
F+ E RL RQ
Sbjct: 94 -LFIDEIHRLSRQ 105
>pdb|3OPZ|H Chain H, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|I Chain I, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
pdb|3OPZ|J Chain J, Crystal Structure Of Trans-Sialidase In Complex With The
Fab Fragment Of A Neutralizing Monoclonal Igg Antibody
Length = 222
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 7/45 (15%)
Query: 190 IPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILF 234
I Y E+ KG K+ILT+ D ST Y+Q+ LT ED I +
Sbjct: 57 INYNEKFKG-KVILTA------DTSSSTAYMQLSSLTSEDSAIYY 94
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 99 VYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLR 158
++G G+GKTTL V+ E+ + +RVT P +++ D A N+ EGD+
Sbjct: 43 LFGPPGLGKTTL-AHVIAHELGVN----LRVTSGPAIEKPGDLAAILANSLEEGDI---- 93
Query: 159 AAFLSE--RLKRQ 169
F+ E RL RQ
Sbjct: 94 -LFIDEIHRLSRQ 105
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 415 PREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIK---- 469
P +L E+L + V+ + K L +L NN +DI P + E+
Sbjct: 172 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 231
Query: 470 ---------------NLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELE 514
+LDL++ IS+LAP L L KL L L +++ S + L
Sbjct: 232 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALT 290
Query: 515 VLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNSFGDWE 574
L L +++ + I +S + + +S L++L+ L+ N+
Sbjct: 291 NLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN----- 341
Query: 575 VEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRF-RVCVNDDYWE 632
+ S+V+SL LT + ++ + ++ + P NL R ++ +ND W
Sbjct: 342 ----------KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWT 388
Query: 633 IAP 635
AP
Sbjct: 389 NAP 391
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 12/73 (16%)
Query: 99 VYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLR 158
++G G+GKTTL V+ E+ + +RVT P +++ D A N+ EGD+
Sbjct: 43 LFGPPGLGKTTL-AHVIAHELGVN----LRVTSGPAIEKPGDLAAILANSLEEGDI---- 93
Query: 159 AAFLSE--RLKRQ 169
F+ E RL RQ
Sbjct: 94 -LFIDEIHRLSRQ 105
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 415 PREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIK---- 469
P +L E+L + V+ + K L +L NN +DI P + E+
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 226
Query: 470 ---------------NLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELE 514
+LDL++ IS+LAP L L KL L L +++ S + L
Sbjct: 227 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALT 285
Query: 515 VLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNSFGDWE 574
L L +++ + I +S + + +S L++L+ L+ N+
Sbjct: 286 NLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN----- 336
Query: 575 VEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRF-RVCVNDDYWE 632
+ S+V+SL LT + ++ + ++ + P NL R ++ +ND W
Sbjct: 337 ----------KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWT 383
Query: 633 IAP 635
AP
Sbjct: 384 NAP 386
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 415 PREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIK---- 469
P +L E+L + V+ + K L +L NN +DI P + E+
Sbjct: 168 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 227
Query: 470 ---------------NLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELE 514
+LDL++ IS+LAP L L KL L L +++ S + L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 515 VLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNSFGDWE 574
L L +++ + I +S + + +S L++L+ L+ N+
Sbjct: 287 NLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN----- 337
Query: 575 VEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRF-RVCVNDDYWE 632
+ S+V+SL LT + ++ + ++ + P NL R ++ +ND W
Sbjct: 338 ----------KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWT 384
Query: 633 IAP 635
AP
Sbjct: 385 NAP 387
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 30.4 bits (67), Expect = 4.9, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 17/101 (16%)
Query: 27 RHQLSRVATKKTVEIIEHIRLSNFESISFPARSADVRSIPTPEFVPLKSALEVIKSVMKL 86
+ ++ +A + +++H R++NFE+ S P ++ L+ V ++
Sbjct: 82 QQSVADIAEVEVYGVVDHHRVANFETAS-------------PLYMRLEPVGSASSIVYRM 128
Query: 87 LKDNSISI--NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVI 125
K++ +++ I G+ SG I T L+K P DKVI
Sbjct: 129 FKEHGVAVPKEIAGLMLSGLISDTLLLKSPTTH--PTDKVI 167
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 97/243 (39%), Gaps = 45/243 (18%)
Query: 415 PREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIK---- 469
P +L E+L + V+ + K L +L NN +DI P + E+
Sbjct: 168 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN 227
Query: 470 ---------------NLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELE 514
+LDL++ IS+LAP L L KL L L +++ S + L
Sbjct: 228 QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALT 286
Query: 515 VLILKGSRIVELPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYVGNSFGDWE 574
L L +++ + I +S + + +S L++L+ L+ N+
Sbjct: 287 NLELNENQLED----ISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN----- 337
Query: 575 VEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRF-RVCVNDDYWE 632
+ S+V+SL LT + ++ + ++ + P NL R ++ +ND W
Sbjct: 338 ----------KVSDVSSLANLTNINWLSAGHNQISDL---TPLANLTRITQLGLNDQAWT 384
Query: 633 IAP 635
AP
Sbjct: 385 NAP 387
>pdb|3L0I|A Chain A, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|C Chain C, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 363
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 823 NVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTN---AHNLKQLEELTVASCNHMERIITV 879
N + P P F K+L+G +K V T+ HN K L +A+ +ER V
Sbjct: 264 NERATPDPDFKVGKSKILVGIXQFIKDVADPTSKIWXHNTKALXNHKIAAIQKLERSNNV 323
Query: 880 SDE 882
+DE
Sbjct: 324 NDE 326
>pdb|3JZ9|A Chain A, Crystal Structure Of The Gef Domain Of Drra/sidm From
Legionella Pneumophila
Length = 197
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 17/113 (15%)
Query: 787 EGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSA--------------PQPMF 832
+G L+ L D ++ E+ VE G N SA P P F
Sbjct: 65 KGYAILQSLWGAASDYSRAAATLTESTVEPGLVSAVNKXSAFFXDCKLSPNERATPDPDF 124
Query: 833 FPNLKKLLIGKCNKMKRVLSLTN---AHNLKQLEELTVASCNHMERIITVSDE 882
K+L+G +K V T+ HN K L +A+ +ER V+DE
Sbjct: 125 KVGKSKILVGIXQFIKDVADPTSKIWXHNTKALXNHKIAAIQKLERSNNVNDE 177
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEEL 564
LP G+ T + +P +++ L L+ L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|1JFQ|H Chain H, Antigen-Binding Fragment Of The Murine Anti-Phenylarsonate
Antibody 36-71, "fab 36-71"
Length = 222
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 190 IPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFD 248
I Y E+ KG K LT D+ +T Y+Q+ LT ED + F ++ G+ FD
Sbjct: 58 ITYNEKFKG-KTTLT------VDKSSNTAYMQLRSLTSEDSAVYFCARSEYYGGSYKFD 109
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEEL 564
LP G+ T + +P +++ L L+ L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
>pdb|3L0M|A Chain A, Crystal Structure Of Rab1-Activation Domain And P4m Domain
Of SidmDRRA FROM LEGIONELLA
pdb|3L0M|B Chain B, Crystal Structure Of Rab1-Activation Domain And P4m Domain
Of SidmDRRA FROM LEGIONELLA
Length = 336
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 823 NVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTN---AHNLKQLEELTVASCNHMERIITV 879
N + P P F K+L+G +K V T+ HN K L +A+ +ER V
Sbjct: 140 NERATPDPDFKVGKSKILVGIXQFIKDVADPTSKIWXHNTKALXNHKIAAIQKLERSNNV 199
Query: 880 SDE 882
+DE
Sbjct: 200 NDE 202
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 408 PGMKKGWPREDLQNCEKLSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFF 462
PG+ P+ EKLSL + N+T LP L TL LQ N IP FF
Sbjct: 141 PGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEEL 564
LP G+ T + +P +++ L L+ L
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 408 PGMKKGWPREDLQNCEKLSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFF 462
PG+ P+ EKLSL + N+T LP L TL LQ N IP FF
Sbjct: 141 PGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYV 566
LP G+ T + +P +++ L L+ L +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 408 PGMKKGWPREDLQNCEKLSLMDGNVTALPDQ--PKCPRLTTLFLQNNPFADIPNAFF 462
PG+ P+ EKLSL + N+T LP L TL LQ N IP FF
Sbjct: 141 PGLLTPTPK-----LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYV 566
LP G+ T + +P +++ L L+ L +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
>pdb|2P91|A Chain A, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|B Chain B, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|C Chain C, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
pdb|2P91|D Chain D, Crystal Structure Of Enoyl-[acyl-Carrier-Protein]
Reductase (Nadh) From Aquifex Aeolicus Vf5
Length = 285
Score = 29.6 bits (65), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 12/85 (14%)
Query: 132 TPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIP 191
TP +++ EIA+ ++L +V L E +K K+ L++ WG LD+ V I
Sbjct: 56 TPKLEKRVREIAKGFGSDLVVKCDVS----LDEDIKNLKK---FLEENWGSLDIIVHSIA 108
Query: 192 YG--EEHKGCKIILTSR--FKEVCD 212
Y EE KG +I TSR FK D
Sbjct: 109 YAPKEEFKGG-VIDTSREGFKIAMD 132
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYV 566
LP G+ T + +P +++ L L+ L +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYV 566
LP G+ T + +P +++ L L+ L +
Sbjct: 139 LPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLL 179
>pdb|4DGI|H Chain H, Structure Of Pom1 Fab Fragment Complexed With Human Prpc
Fragment 120- 230
Length = 218
Score = 29.6 bits (65), Expect = 8.6, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 181 GKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILFKKKAG 239
G +D + + E+ KG K LT DE ST Y+Q+ LT ED + F ++G
Sbjct: 49 GSIDPSDSYTSHNEKFKG-KATLT------VDESSSTAYMQLSSLTSEDSAVYFCSRSG 100
>pdb|1MEX|H Chain H, Antibody Catalysis Of A Bimolecular Cycloaddition Reaction
Length = 215
Score = 29.6 bits (65), Expect = 8.8, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 7/47 (14%)
Query: 190 IPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILFKK 236
I Y E+ KG K LT+ D+ ST Y+Q+ LT ED + F K
Sbjct: 58 IKYNEKFKG-KATLTA------DKSSSTAYMQLNSLTSEDSAVYFCK 97
>pdb|1KB5|H Chain H, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 219
Score = 29.6 bits (65), Expect = 9.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 181 GKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILF 234
G +D GI Y ++ KG R D+ ST Y+Q++ LT ED + +
Sbjct: 49 GNIDPYYGGISYNQKFKG-------RATLTVDKSSSTAYMQLKSLTSEDSAVYY 95
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 95 NIIGVYGSGGIGKTTLMKQV------MKQEIPFDKVIFVRV 129
N++ +G GIGKTTL+K + +K EI ++ V +V
Sbjct: 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV 76
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 29.6 bits (65), Expect = 9.3, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 17/101 (16%)
Query: 27 RHQLSRVATKKTVEIIEHIRLSNFESISFPARSADVRSIPTPEFVPLKSALEVIKSVMKL 86
+ ++ +A + +++H R++NFE+ + P ++ L+ V ++
Sbjct: 81 QQSVADIAEVEVYGVVDHHRVANFETAN-------------PLYMRLEPVGSASSIVYRM 127
Query: 87 LKDNSISIN--IIGVYGSGGIGKTTLMKQVMKQEIPFDKVI 125
K++S++++ I G+ SG I T L+K P DK I
Sbjct: 128 FKEHSVAVSKEIAGLMLSGLISDTLLLKSPTTH--PTDKAI 166
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASL--IREFGELEVLILKGSRIVE 525
+ LDLS + SL L L L + L L +R GEL+ L LKG+ +
Sbjct: 80 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 139
Query: 526 LPNGIGTVSXXXXXXXXXXXXXQVIPPNVISKLSQLEELYV 566
LP G+ T + +P +++ L L+ L +
Sbjct: 140 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,328,193
Number of Sequences: 62578
Number of extensions: 1099084
Number of successful extensions: 3490
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 3311
Number of HSP's gapped (non-prelim): 235
length of query: 977
length of database: 14,973,337
effective HSP length: 108
effective length of query: 869
effective length of database: 8,214,913
effective search space: 7138759397
effective search space used: 7138759397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)