Query 002037
Match_columns 977
No_of_seqs 570 out of 4673
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 15:05:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.7E-81 5.9E-86 738.9 41.6 550 15-601 101-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.3E-64 2.8E-69 634.1 54.7 506 32-569 134-691 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8.6E-43 1.9E-47 375.8 19.1 274 76-351 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.7E-29 3.6E-34 319.0 24.5 473 419-953 92-580 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.1E-28 2.3E-33 311.7 25.9 465 420-957 69-560 (968)
6 PLN03210 Resistant to P. syrin 99.9 2.1E-20 4.6E-25 235.7 26.5 343 419-807 557-910 (1153)
7 KOG4194 Membrane glycoprotein 99.8 3E-21 6.5E-26 204.6 10.6 193 421-624 53-252 (873)
8 KOG4194 Membrane glycoprotein 99.8 7.5E-21 1.6E-25 201.7 6.1 321 419-802 101-428 (873)
9 KOG0618 Serine/threonine phosp 99.8 1.4E-21 3.1E-26 218.5 -6.8 468 425-956 3-488 (1081)
10 KOG0444 Cytoskeletal regulator 99.8 5.1E-21 1.1E-25 203.8 -3.2 147 421-569 8-160 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 2.7E-22 5.9E-27 203.5 -12.6 470 423-952 48-536 (565)
12 KOG0444 Cytoskeletal regulator 99.8 9.9E-21 2.1E-25 201.7 -6.2 172 419-603 31-207 (1255)
13 KOG0618 Serine/threonine phosp 99.7 6.3E-18 1.4E-22 189.7 -2.7 398 422-906 47-489 (1081)
14 KOG0472 Leucine-rich repeat pr 99.6 2.8E-18 6.1E-23 174.6 -9.0 351 420-802 137-540 (565)
15 KOG0617 Ras suppressor protein 99.5 1E-16 2.2E-21 144.3 -4.8 167 432-612 23-192 (264)
16 KOG0617 Ras suppressor protein 99.4 8.4E-15 1.8E-19 132.0 -3.3 149 419-570 32-184 (264)
17 PRK04841 transcriptional regul 99.4 4.5E-11 9.8E-16 150.9 26.3 289 72-397 15-332 (903)
18 PRK15387 E3 ubiquitin-protein 99.3 2.7E-11 5.9E-16 141.9 17.1 130 422-569 203-332 (788)
19 KOG4658 Apoptotic ATPase [Sign 99.3 1.4E-12 3E-17 156.2 5.5 101 466-569 523-628 (889)
20 PRK15387 E3 ubiquitin-protein 99.3 5.6E-11 1.2E-15 139.3 17.4 181 410-627 212-392 (788)
21 PRK15370 E3 ubiquitin-protein 99.3 1.9E-11 4.2E-16 144.2 12.1 177 421-627 179-356 (754)
22 PRK15370 E3 ubiquitin-protein 99.2 2.5E-11 5.4E-16 143.3 11.8 187 411-627 190-377 (754)
23 TIGR03015 pepcterm_ATPase puta 99.2 1.9E-09 4.1E-14 114.9 23.9 177 94-272 43-242 (269)
24 PF01637 Arch_ATPase: Archaeal 99.2 9.3E-11 2E-15 122.4 11.4 191 73-267 1-233 (234)
25 PF05729 NACHT: NACHT domain 99.1 2.9E-10 6.3E-15 111.5 11.7 139 95-238 1-163 (166)
26 PRK00411 cdc6 cell division co 99.1 7.8E-09 1.7E-13 116.8 24.6 285 72-375 31-356 (394)
27 KOG4237 Extracellular matrix p 99.1 4.2E-12 9.2E-17 130.1 -2.8 136 410-545 57-199 (498)
28 COG2909 MalT ATP-dependent tra 99.1 6E-09 1.3E-13 118.4 21.6 284 83-399 27-340 (894)
29 TIGR02928 orc1/cdc6 family rep 99.1 4.4E-08 9.5E-13 109.5 27.1 287 72-375 16-348 (365)
30 TIGR00635 ruvB Holliday juncti 99.0 1E-08 2.2E-13 111.3 18.8 274 69-377 2-289 (305)
31 PRK00080 ruvB Holliday junctio 99.0 6.2E-09 1.3E-13 113.5 16.0 274 68-377 22-310 (328)
32 KOG4341 F-box protein containi 98.9 2.1E-11 4.6E-16 126.2 -6.8 268 652-949 159-431 (483)
33 PF14580 LRR_9: Leucine-rich r 98.9 9.1E-10 2E-14 105.6 4.1 137 429-567 6-148 (175)
34 COG2256 MGS1 ATPase related to 98.9 1.4E-07 3E-12 98.6 19.2 172 68-265 21-209 (436)
35 PF14580 LRR_9: Leucine-rich r 98.8 2.3E-09 5E-14 102.8 4.3 132 462-601 15-148 (175)
36 KOG0532 Leucine-rich repeat (L 98.8 3.2E-10 7E-15 121.8 -2.3 176 419-610 74-251 (722)
37 KOG4237 Extracellular matrix p 98.8 4.1E-10 8.8E-15 115.8 -2.2 200 419-629 90-358 (498)
38 KOG4341 F-box protein containi 98.8 1.3E-10 2.9E-15 120.4 -5.9 262 646-936 179-442 (483)
39 PRK06893 DNA replication initi 98.7 8.1E-08 1.8E-12 98.6 11.7 149 94-268 39-203 (229)
40 PRK13342 recombination factor 98.7 1.2E-07 2.6E-12 106.6 14.0 178 68-271 9-199 (413)
41 KOG0532 Leucine-rich repeat (L 98.7 5.9E-10 1.3E-14 119.9 -4.5 143 422-569 100-244 (722)
42 KOG1259 Nischarin, modulator o 98.7 1.4E-09 3.1E-14 107.4 -1.6 131 419-552 283-416 (490)
43 cd00116 LRR_RI Leucine-rich re 98.7 1.1E-08 2.3E-13 112.4 3.9 131 439-569 78-231 (319)
44 PRK07003 DNA polymerase III su 98.6 1.6E-06 3.5E-11 99.5 19.6 183 67-268 12-221 (830)
45 cd00116 LRR_RI Leucine-rich re 98.6 6.8E-09 1.5E-13 114.0 0.5 183 419-607 80-292 (319)
46 TIGR03420 DnaA_homol_Hda DnaA 98.6 2.7E-07 5.8E-12 95.4 11.5 168 75-270 21-203 (226)
47 PTZ00112 origin recognition co 98.6 1.2E-05 2.7E-10 92.7 24.6 166 73-239 757-950 (1164)
48 KOG1259 Nischarin, modulator o 98.6 7.5E-09 1.6E-13 102.5 -0.8 131 464-606 282-412 (490)
49 PRK14960 DNA polymerase III su 98.5 4.2E-06 9.2E-11 95.1 19.5 180 67-265 11-216 (702)
50 PF13173 AAA_14: AAA domain 98.5 1.3E-07 2.8E-12 87.5 6.2 120 94-230 2-127 (128)
51 PRK14949 DNA polymerase III su 98.5 1.1E-06 2.4E-11 102.9 15.0 182 68-268 13-220 (944)
52 COG3903 Predicted ATPase [Gene 98.5 2.5E-07 5.4E-12 97.6 8.9 287 94-396 14-313 (414)
53 COG3899 Predicted ATPase [Gene 98.5 3.4E-06 7.4E-11 102.3 19.6 260 73-342 2-333 (849)
54 KOG3207 Beta-tubulin folding c 98.5 3.3E-08 7.2E-13 103.5 1.0 205 419-627 120-336 (505)
55 PRK14961 DNA polymerase III su 98.5 3.8E-06 8.2E-11 92.7 17.3 189 68-265 13-217 (363)
56 PLN03025 replication factor C 98.5 1.4E-06 3.1E-11 94.5 13.1 179 67-262 9-194 (319)
57 PRK05564 DNA polymerase III su 98.5 4.7E-06 1E-10 90.3 17.0 174 70-266 3-188 (313)
58 PRK04195 replication factor C 98.5 1.1E-05 2.3E-10 92.9 20.5 186 67-272 10-206 (482)
59 COG4886 Leucine-rich repeat (L 98.5 1.5E-07 3.4E-12 106.3 5.4 172 440-627 114-287 (394)
60 PRK12323 DNA polymerase III su 98.5 2E-06 4.3E-11 97.5 13.9 178 67-267 12-224 (700)
61 PF05496 RuvB_N: Holliday junc 98.4 3.9E-06 8.5E-11 82.2 13.7 178 68-272 21-225 (233)
62 PRK14963 DNA polymerase III su 98.4 8.5E-06 1.8E-10 92.8 18.7 188 68-265 11-214 (504)
63 PF13401 AAA_22: AAA domain; P 98.4 5E-07 1.1E-11 84.3 7.3 112 94-207 4-125 (131)
64 KOG3207 Beta-tubulin folding c 98.4 5.2E-08 1.1E-12 102.1 0.5 130 439-569 118-256 (505)
65 KOG2028 ATPase related to the 98.4 1.8E-06 3.8E-11 88.4 11.4 156 85-262 155-330 (554)
66 cd01128 rho_factor Transcripti 98.4 6.4E-07 1.4E-11 91.9 8.3 88 95-182 17-115 (249)
67 cd00009 AAA The AAA+ (ATPases 98.4 1.6E-06 3.5E-11 82.9 10.5 121 75-209 2-131 (151)
68 COG4886 Leucine-rich repeat (L 98.4 2.5E-07 5.4E-12 104.7 5.5 175 419-608 115-292 (394)
69 PRK14962 DNA polymerase III su 98.4 6.6E-06 1.4E-10 92.8 16.5 187 67-272 10-223 (472)
70 PRK06645 DNA polymerase III su 98.4 7.5E-06 1.6E-10 92.7 16.6 178 67-263 17-224 (507)
71 PRK12402 replication factor C 98.4 5E-06 1.1E-10 91.9 14.6 195 69-266 13-224 (337)
72 PRK08727 hypothetical protein; 98.4 4.6E-06 9.9E-11 85.8 12.9 146 94-265 41-201 (233)
73 PRK14956 DNA polymerase III su 98.3 3.8E-06 8.3E-11 92.9 12.8 189 67-263 14-217 (484)
74 PRK14957 DNA polymerase III su 98.3 1E-05 2.2E-10 92.2 16.4 184 68-270 13-223 (546)
75 TIGR01242 26Sp45 26S proteasom 98.3 1.3E-05 2.9E-10 88.8 16.5 172 71-262 122-328 (364)
76 PRK08084 DNA replication initi 98.3 8.3E-06 1.8E-10 84.1 13.7 162 77-266 30-207 (235)
77 COG1474 CDC6 Cdc6-related prot 98.3 3.3E-05 7.1E-10 84.2 18.9 195 73-268 19-238 (366)
78 PRK07994 DNA polymerase III su 98.3 7.5E-06 1.6E-10 94.7 14.3 191 68-267 13-219 (647)
79 PRK09376 rho transcription ter 98.3 1.6E-06 3.6E-11 92.2 8.2 87 96-182 171-268 (416)
80 PRK00440 rfc replication facto 98.3 1.2E-05 2.6E-10 88.1 15.5 179 68-265 14-200 (319)
81 TIGR00678 holB DNA polymerase 98.3 1.6E-05 3.6E-10 79.2 15.0 158 82-264 3-187 (188)
82 PRK09112 DNA polymerase III su 98.3 1.8E-05 3.8E-10 86.0 16.2 194 69-269 21-241 (351)
83 PRK07940 DNA polymerase III su 98.3 2.1E-05 4.6E-10 86.5 16.9 176 70-268 4-213 (394)
84 PRK14964 DNA polymerase III su 98.3 1.2E-05 2.7E-10 90.1 15.2 179 67-264 9-213 (491)
85 PRK13341 recombination factor 98.3 4.3E-06 9.2E-11 98.9 12.0 170 67-262 24-211 (725)
86 PRK08691 DNA polymerase III su 98.3 7.6E-06 1.6E-10 94.1 13.4 180 67-265 12-217 (709)
87 PRK14958 DNA polymerase III su 98.3 1.2E-05 2.7E-10 91.7 15.0 180 67-265 12-217 (509)
88 PRK14951 DNA polymerase III su 98.3 1.4E-05 3.1E-10 92.2 15.5 192 68-265 13-222 (618)
89 PLN03150 hypothetical protein; 98.2 2.3E-06 4.9E-11 101.4 8.3 102 467-569 419-525 (623)
90 PF13855 LRR_8: Leucine rich r 98.2 6.2E-07 1.4E-11 70.4 2.3 58 443-500 2-60 (61)
91 TIGR02397 dnaX_nterm DNA polym 98.2 3.8E-05 8.1E-10 85.5 17.5 182 68-269 11-219 (355)
92 PRK07471 DNA polymerase III su 98.2 4.2E-05 9.2E-10 83.5 17.2 193 69-268 17-238 (365)
93 PRK05896 DNA polymerase III su 98.2 2.5E-05 5.3E-10 89.1 15.8 196 67-270 12-223 (605)
94 PLN03150 hypothetical protein; 98.2 3.4E-06 7.4E-11 99.9 8.9 109 443-551 419-532 (623)
95 PRK14959 DNA polymerase III su 98.2 9.2E-05 2E-09 85.0 19.8 187 68-273 13-226 (624)
96 TIGR02903 spore_lon_C ATP-depe 98.2 2.5E-05 5.5E-10 91.7 15.8 201 67-271 150-398 (615)
97 PF00308 Bac_DnaA: Bacterial d 98.2 1.9E-05 4.2E-10 80.1 12.9 155 94-265 34-205 (219)
98 PRK09087 hypothetical protein; 98.2 1.4E-05 3.1E-10 81.3 11.9 140 94-267 44-194 (226)
99 PRK08903 DnaA regulatory inact 98.2 1.5E-05 3.2E-10 82.3 12.0 149 94-272 42-203 (227)
100 PTZ00202 tuzin; Provisional 98.2 2.5E-05 5.3E-10 83.7 13.5 164 68-238 259-434 (550)
101 PF05621 TniB: Bacterial TniB 98.2 4.1E-05 8.8E-10 79.0 14.8 200 66-265 32-258 (302)
102 PRK14969 DNA polymerase III su 98.1 3.3E-05 7.1E-10 88.9 14.8 182 68-268 13-221 (527)
103 PRK14955 DNA polymerase III su 98.1 3E-05 6.6E-10 86.7 14.1 196 68-265 13-225 (397)
104 PF13855 LRR_8: Leucine rich r 98.1 2.4E-06 5.1E-11 67.1 3.7 56 467-522 2-60 (61)
105 KOG2120 SCF ubiquitin ligase, 98.1 7.5E-08 1.6E-12 95.7 -6.0 37 736-774 337-373 (419)
106 PRK14087 dnaA chromosomal repl 98.1 0.00022 4.7E-09 80.7 20.6 163 94-270 141-321 (450)
107 PRK05642 DNA replication initi 98.1 3.3E-05 7.2E-10 79.5 12.9 149 94-268 45-208 (234)
108 TIGR00767 rho transcription te 98.1 1.1E-05 2.3E-10 86.7 9.3 87 96-182 170-267 (415)
109 PRK09111 DNA polymerase III su 98.1 5E-05 1.1E-09 88.1 15.5 195 67-267 20-232 (598)
110 KOG2120 SCF ubiquitin ligase, 98.1 3.1E-07 6.7E-12 91.4 -2.5 58 512-570 186-245 (419)
111 PRK15386 type III secretion pr 98.1 9.7E-06 2.1E-10 87.5 8.2 136 736-931 51-188 (426)
112 KOG2982 Uncharacterized conser 98.1 2.4E-06 5.3E-11 85.2 3.4 98 469-569 48-156 (418)
113 TIGR02639 ClpA ATP-dependent C 98.1 4.5E-05 9.7E-10 92.3 14.8 155 69-238 180-358 (731)
114 PRK08451 DNA polymerase III su 98.1 0.00011 2.3E-09 83.5 16.6 182 68-268 11-218 (535)
115 PHA02544 44 clamp loader, smal 98.0 5.6E-05 1.2E-09 82.5 14.1 149 66-236 16-171 (316)
116 PF13191 AAA_16: AAA ATPase do 98.0 1.6E-05 3.4E-10 79.4 8.6 45 73-117 2-47 (185)
117 PRK07133 DNA polymerase III su 98.0 0.00013 2.9E-09 85.1 17.1 180 67-269 14-221 (725)
118 PRK14952 DNA polymerase III su 98.0 9.6E-05 2.1E-09 85.2 15.9 183 67-272 9-224 (584)
119 PRK14954 DNA polymerase III su 98.0 0.00011 2.4E-09 85.4 16.3 195 67-263 12-223 (620)
120 PRK03992 proteasome-activating 98.0 0.00011 2.4E-09 81.7 15.6 171 72-262 132-337 (389)
121 TIGR03345 VI_ClpV1 type VI sec 98.0 7.5E-05 1.6E-09 90.9 15.2 178 68-261 184-389 (852)
122 PRK14970 DNA polymerase III su 98.0 0.00014 3.1E-09 81.0 16.4 177 68-263 14-204 (367)
123 PTZ00361 26 proteosome regulat 98.0 6.9E-05 1.5E-09 83.3 12.8 153 69-239 181-368 (438)
124 PRK07764 DNA polymerase III su 98.0 0.00012 2.6E-09 87.9 15.7 175 67-264 11-217 (824)
125 PRK14953 DNA polymerase III su 98.0 0.00028 6E-09 80.3 17.9 180 67-269 12-221 (486)
126 PRK14950 DNA polymerase III su 98.0 0.00019 4.1E-09 84.3 17.2 195 68-268 13-221 (585)
127 KOG0989 Replication factor C, 98.0 2.3E-05 4.9E-10 79.3 7.8 187 66-269 31-232 (346)
128 PRK06305 DNA polymerase III su 97.9 0.0002 4.4E-09 80.9 15.8 181 68-268 14-223 (451)
129 TIGR00362 DnaA chromosomal rep 97.9 0.00051 1.1E-08 77.5 19.1 177 94-287 136-337 (405)
130 PRK14971 DNA polymerase III su 97.9 0.0002 4.4E-09 83.8 16.1 177 68-264 14-218 (614)
131 KOG1859 Leucine-rich repeat pr 97.9 1.5E-07 3.2E-12 104.4 -9.3 171 419-604 108-290 (1096)
132 PRK15386 type III secretion pr 97.9 3.1E-05 6.6E-10 83.8 8.2 58 681-751 51-108 (426)
133 TIGR03689 pup_AAA proteasome A 97.9 0.00022 4.7E-09 80.6 15.2 165 66-239 177-379 (512)
134 PRK00149 dnaA chromosomal repl 97.9 0.00065 1.4E-08 77.6 19.5 177 94-287 148-349 (450)
135 PRK10536 hypothetical protein; 97.9 0.00017 3.7E-09 73.0 12.8 56 67-126 51-109 (262)
136 PRK14948 DNA polymerase III su 97.9 0.00034 7.4E-09 81.9 17.0 195 68-268 13-222 (620)
137 CHL00095 clpC Clp protease ATP 97.9 0.00013 2.9E-09 89.4 14.2 154 69-237 177-353 (821)
138 TIGR02881 spore_V_K stage V sp 97.9 7.8E-05 1.7E-09 78.5 10.6 128 94-239 42-192 (261)
139 PRK06647 DNA polymerase III su 97.9 0.00034 7.4E-09 80.9 16.5 192 67-267 12-219 (563)
140 PRK06620 hypothetical protein; 97.9 0.00016 3.4E-09 73.1 12.2 131 95-262 45-183 (214)
141 KOG2543 Origin recognition com 97.8 0.00085 1.8E-08 70.3 17.2 162 72-237 7-192 (438)
142 PF14516 AAA_35: AAA-like doma 97.8 0.00087 1.9E-08 72.9 18.5 192 74-274 14-245 (331)
143 KOG1644 U2-associated snRNP A' 97.8 2.6E-05 5.6E-10 73.9 5.7 83 421-503 43-127 (233)
144 KOG2227 Pre-initiation complex 97.8 0.0019 4.1E-08 69.6 20.0 191 72-262 151-362 (529)
145 PRK14088 dnaA chromosomal repl 97.8 0.0015 3.3E-08 73.8 20.6 178 94-287 130-332 (440)
146 PRK05563 DNA polymerase III su 97.8 0.00047 1E-08 80.1 16.6 190 67-264 12-216 (559)
147 PRK05707 DNA polymerase III su 97.8 0.00061 1.3E-08 73.5 16.2 149 94-268 22-203 (328)
148 PRK11331 5-methylcytosine-spec 97.8 0.0001 2.3E-09 80.7 10.0 104 72-182 176-284 (459)
149 KOG0531 Protein phosphatase 1, 97.8 3.5E-06 7.5E-11 95.4 -1.5 120 424-545 76-197 (414)
150 TIGR02880 cbbX_cfxQ probable R 97.8 0.00039 8.5E-09 73.7 14.1 128 96-239 60-209 (284)
151 PRK14086 dnaA chromosomal repl 97.8 0.0018 3.9E-08 74.2 20.1 151 95-262 315-482 (617)
152 PRK07399 DNA polymerase III su 97.7 0.00067 1.5E-08 72.7 15.4 194 70-268 3-221 (314)
153 PRK14965 DNA polymerase III su 97.7 0.00042 9E-09 81.0 14.6 194 67-269 12-222 (576)
154 KOG1909 Ran GTPase-activating 97.7 4.4E-06 9.6E-11 85.6 -1.5 158 441-605 29-225 (382)
155 PTZ00454 26S protease regulato 97.7 0.0008 1.7E-08 74.5 16.0 173 70-262 144-351 (398)
156 CHL00181 cbbX CbbX; Provisiona 97.7 0.0011 2.3E-08 70.3 16.2 128 96-239 61-210 (287)
157 PRK11034 clpA ATP-dependent Cl 97.7 0.00024 5.1E-09 84.8 12.3 154 70-238 185-362 (758)
158 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00047 1E-08 84.8 14.8 154 69-238 171-349 (852)
159 PRK12422 chromosomal replicati 97.6 0.002 4.3E-08 72.7 18.1 151 94-261 141-306 (445)
160 COG1373 Predicted ATPase (AAA+ 97.6 0.00049 1.1E-08 76.5 13.0 134 75-233 21-162 (398)
161 PRK10865 protein disaggregatio 97.6 0.00065 1.4E-08 83.2 15.1 155 68-238 175-354 (857)
162 PF12799 LRR_4: Leucine Rich r 97.6 3.5E-05 7.6E-10 55.1 2.5 36 467-502 2-37 (44)
163 COG3267 ExeA Type II secretory 97.6 0.0027 5.9E-08 63.2 16.3 176 94-270 51-247 (269)
164 smart00382 AAA ATPases associa 97.6 0.00014 3.1E-09 68.7 7.5 89 95-184 3-92 (148)
165 KOG0531 Protein phosphatase 1, 97.6 8.1E-06 1.7E-10 92.4 -2.4 128 440-570 70-197 (414)
166 COG1222 RPT1 ATP-dependent 26S 97.6 0.0022 4.7E-08 66.8 15.2 198 69-288 149-393 (406)
167 CHL00176 ftsH cell division pr 97.5 0.0011 2.3E-08 77.9 14.1 172 70-261 185-387 (638)
168 PF00004 AAA: ATPase family as 97.5 0.00036 7.9E-09 64.9 8.5 21 97-117 1-21 (132)
169 KOG3665 ZYG-1-like serine/thre 97.5 5.4E-05 1.2E-09 89.3 3.4 145 420-565 122-281 (699)
170 KOG3665 ZYG-1-like serine/thre 97.5 5.2E-05 1.1E-09 89.5 3.2 127 442-569 122-260 (699)
171 COG2255 RuvB Holliday junction 97.5 0.0023 4.9E-08 64.5 14.0 172 67-268 22-223 (332)
172 KOG2982 Uncharacterized conser 97.5 1.6E-05 3.6E-10 79.4 -0.9 109 487-605 43-158 (418)
173 TIGR01241 FtsH_fam ATP-depende 97.5 0.003 6.4E-08 73.2 17.5 177 66-262 50-260 (495)
174 PF12799 LRR_4: Leucine Rich r 97.5 0.00011 2.3E-09 52.7 3.3 36 511-546 1-36 (44)
175 TIGR00602 rad24 checkpoint pro 97.5 0.0005 1.1E-08 79.9 10.5 51 67-117 80-133 (637)
176 PRK08769 DNA polymerase III su 97.4 0.004 8.6E-08 66.5 16.1 171 78-268 11-208 (319)
177 COG0593 DnaA ATPase involved i 97.4 0.014 3.1E-07 63.6 20.3 181 93-290 112-316 (408)
178 KOG1859 Leucine-rich repeat pr 97.4 4.5E-06 9.7E-11 93.0 -6.5 125 419-546 163-291 (1096)
179 KOG1947 Leucine rich repeat pr 97.4 1.4E-05 3E-10 93.5 -3.6 67 736-803 242-308 (482)
180 KOG4579 Leucine-rich repeat (L 97.4 9.3E-06 2E-10 71.7 -3.8 90 440-529 51-141 (177)
181 KOG0731 AAA+-type ATPase conta 97.3 0.0018 3.9E-08 75.1 12.6 181 67-265 310-521 (774)
182 KOG1644 U2-associated snRNP A' 97.3 0.00031 6.8E-09 66.8 5.4 100 442-543 42-149 (233)
183 PF13177 DNA_pol3_delta2: DNA 97.3 0.0017 3.6E-08 62.6 10.6 134 75-226 1-162 (162)
184 PRK08058 DNA polymerase III su 97.3 0.005 1.1E-07 66.9 15.4 157 73-237 7-181 (329)
185 PRK06090 DNA polymerase III su 97.3 0.021 4.6E-07 61.0 19.3 189 79-287 11-217 (319)
186 KOG1947 Leucine rich repeat pr 97.3 2E-05 4.3E-10 92.2 -4.1 119 735-871 212-332 (482)
187 CHL00195 ycf46 Ycf46; Provisio 97.3 0.015 3.2E-07 66.1 18.9 151 94-262 259-429 (489)
188 PRK08118 topology modulation p 97.3 0.00015 3.3E-09 70.2 2.6 32 95-126 2-37 (167)
189 PRK08116 hypothetical protein; 97.2 0.00085 1.8E-08 70.4 8.2 101 95-208 115-221 (268)
190 PRK06871 DNA polymerase III su 97.2 0.013 2.7E-07 62.9 17.0 172 80-265 11-200 (325)
191 PF04665 Pox_A32: Poxvirus A32 97.2 0.00076 1.6E-08 68.1 7.3 37 95-131 14-51 (241)
192 KOG0741 AAA+-type ATPase [Post 97.2 0.0087 1.9E-07 65.3 15.2 157 93-272 537-716 (744)
193 KOG0991 Replication factor C, 97.2 0.00065 1.4E-08 65.8 5.7 100 67-182 23-125 (333)
194 KOG4579 Leucine-rich repeat (L 97.2 3.9E-05 8.6E-10 67.8 -2.3 107 446-553 31-141 (177)
195 PF10443 RNA12: RNA12 protein; 97.2 0.026 5.6E-07 61.4 18.3 193 76-277 1-288 (431)
196 TIGR02640 gas_vesic_GvpN gas v 97.1 0.0085 1.8E-07 63.0 14.5 56 77-139 8-64 (262)
197 KOG0730 AAA+-type ATPase [Post 97.1 0.013 2.8E-07 66.2 16.2 129 93-239 467-616 (693)
198 PRK08181 transposase; Validate 97.1 0.00077 1.7E-08 70.2 6.3 78 85-182 101-179 (269)
199 PRK12608 transcription termina 97.1 0.0024 5.2E-08 68.6 10.0 101 81-182 121-232 (380)
200 PF05673 DUF815: Protein of un 97.1 0.03 6.5E-07 56.3 17.0 47 70-117 26-75 (249)
201 TIGR03345 VI_ClpV1 type VI sec 97.1 0.0029 6.2E-08 77.4 11.4 105 73-182 568-680 (852)
202 KOG1909 Ran GTPase-activating 97.1 0.00016 3.5E-09 74.5 0.4 127 420-546 157-310 (382)
203 COG2812 DnaX DNA polymerase II 97.0 0.003 6.5E-08 71.0 10.2 188 67-262 12-214 (515)
204 PRK07261 topology modulation p 97.0 0.0021 4.6E-08 62.5 7.8 31 96-126 2-36 (171)
205 TIGR02237 recomb_radB DNA repa 97.0 0.0041 8.8E-08 63.2 10.0 47 93-140 11-58 (209)
206 TIGR03346 chaperone_ClpB ATP-d 97.0 0.0071 1.5E-07 74.6 13.8 105 73-182 567-679 (852)
207 PRK10865 protein disaggregatio 97.0 0.0047 1E-07 75.8 12.0 105 73-182 570-682 (857)
208 TIGR02639 ClpA ATP-dependent C 97.0 0.0057 1.2E-07 74.3 12.6 103 73-182 456-565 (731)
209 TIGR01243 CDC48 AAA family ATP 96.9 0.013 2.9E-07 71.4 15.6 173 70-262 452-657 (733)
210 PRK07993 DNA polymerase III su 96.9 0.027 5.8E-07 61.0 16.3 173 79-265 10-201 (334)
211 PRK12377 putative replication 96.9 0.018 3.9E-07 59.3 13.7 74 94-182 101-175 (248)
212 PRK04132 replication factor C 96.8 0.014 3.1E-07 70.0 14.3 151 100-266 570-729 (846)
213 PHA00729 NTP-binding motif con 96.8 0.0048 1E-07 61.7 8.8 34 82-117 7-40 (226)
214 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0075 1.6E-07 62.6 10.2 87 94-181 19-126 (235)
215 PRK06526 transposase; Provisio 96.8 0.0011 2.3E-08 68.8 3.7 23 95-117 99-121 (254)
216 PRK07952 DNA replication prote 96.8 0.013 2.9E-07 60.1 11.6 92 77-182 82-174 (244)
217 COG0542 clpA ATP-binding subun 96.8 0.014 3.1E-07 68.5 13.0 156 68-238 167-346 (786)
218 PRK06964 DNA polymerase III su 96.8 0.053 1.2E-06 58.6 16.6 91 169-268 131-225 (342)
219 TIGR01243 CDC48 AAA family ATP 96.7 0.012 2.5E-07 71.9 13.0 176 69-264 176-383 (733)
220 KOG0733 Nuclear AAA ATPase (VC 96.7 0.025 5.4E-07 63.1 13.7 183 69-273 188-411 (802)
221 PF01695 IstB_IS21: IstB-like 96.7 0.0011 2.4E-08 64.8 3.2 72 94-182 47-120 (178)
222 PRK09183 transposase/IS protei 96.7 0.0023 4.9E-08 66.8 5.3 23 95-117 103-125 (259)
223 COG0470 HolB ATPase involved i 96.7 0.0087 1.9E-07 65.7 10.2 136 73-224 3-167 (325)
224 KOG0735 AAA+-type ATPase [Post 96.7 0.012 2.5E-07 66.8 10.8 149 94-260 431-607 (952)
225 cd01393 recA_like RecA is a b 96.6 0.012 2.6E-07 60.7 10.4 46 94-139 19-71 (226)
226 KOG0743 AAA+-type ATPase [Post 96.6 0.26 5.6E-06 53.8 20.3 169 77-275 211-417 (457)
227 TIGR02858 spore_III_AA stage I 96.6 0.0099 2.1E-07 62.0 9.6 111 94-211 111-232 (270)
228 PF13207 AAA_17: AAA domain; P 96.6 0.0015 3.3E-08 59.6 3.3 22 96-117 1-22 (121)
229 CHL00095 clpC Clp protease ATP 96.6 0.006 1.3E-07 75.0 9.3 106 72-182 510-623 (821)
230 COG0466 Lon ATP-dependent Lon 96.6 0.016 3.6E-07 66.1 11.5 156 73-238 325-508 (782)
231 PRK08939 primosomal protein Dn 96.6 0.0065 1.4E-07 64.9 8.0 116 75-207 135-260 (306)
232 PRK09361 radB DNA repair and r 96.6 0.017 3.7E-07 59.4 10.9 45 94-139 23-68 (225)
233 PRK11034 clpA ATP-dependent Cl 96.6 0.012 2.7E-07 70.5 11.1 102 73-182 460-569 (758)
234 KOG2228 Origin recognition com 96.5 0.045 9.7E-07 56.8 13.2 168 72-239 25-220 (408)
235 KOG2035 Replication factor C, 96.5 0.062 1.3E-06 54.2 13.7 226 71-313 13-282 (351)
236 COG1223 Predicted ATPase (AAA+ 96.5 0.054 1.2E-06 53.9 13.2 171 71-261 121-318 (368)
237 PF00448 SRP54: SRP54-type pro 96.5 0.0099 2.1E-07 59.1 8.5 56 95-150 2-59 (196)
238 KOG0734 AAA+-type ATPase conta 96.5 0.0069 1.5E-07 66.1 7.7 154 68-239 304-485 (752)
239 TIGR00763 lon ATP-dependent pr 96.5 0.026 5.7E-07 69.0 13.9 49 73-121 322-375 (775)
240 TIGR02012 tigrfam_recA protein 96.5 0.007 1.5E-07 64.4 7.6 85 93-182 54-145 (321)
241 TIGR02902 spore_lonB ATP-depen 96.5 0.0084 1.8E-07 69.6 8.9 48 68-117 62-109 (531)
242 PF07693 KAP_NTPase: KAP famil 96.5 0.14 3.1E-06 56.1 18.3 41 77-117 2-43 (325)
243 PRK06696 uridine kinase; Valid 96.4 0.0045 9.8E-08 63.4 5.6 43 75-117 2-45 (223)
244 cd01120 RecA-like_NTPases RecA 96.4 0.014 3E-07 56.6 8.6 39 96-134 1-40 (165)
245 cd00983 recA RecA is a bacter 96.4 0.0081 1.8E-07 63.9 7.3 84 93-181 54-144 (325)
246 KOG0739 AAA+-type ATPase [Post 96.4 0.057 1.2E-06 54.8 12.6 150 93-262 165-335 (439)
247 PRK09354 recA recombinase A; P 96.4 0.0091 2E-07 64.1 7.6 85 93-182 59-150 (349)
248 KOG1969 DNA replication checkp 96.4 0.0086 1.9E-07 68.1 7.5 75 93-182 325-399 (877)
249 PRK10787 DNA-binding ATP-depen 96.3 0.028 6.1E-07 68.1 12.0 156 73-238 324-506 (784)
250 COG1484 DnaC DNA replication p 96.3 0.02 4.3E-07 59.5 9.3 74 94-182 105-179 (254)
251 COG0464 SpoVK ATPases of the A 96.2 0.046 1E-06 63.6 13.2 150 93-260 275-445 (494)
252 COG0542 clpA ATP-binding subun 96.2 0.012 2.7E-07 69.0 8.2 104 73-182 493-605 (786)
253 cd01133 F1-ATPase_beta F1 ATP 96.2 0.021 4.6E-07 59.1 9.0 88 95-182 70-175 (274)
254 TIGR02238 recomb_DMC1 meiotic 96.2 0.034 7.4E-07 59.6 10.8 54 94-148 96-156 (313)
255 PRK08699 DNA polymerase III su 96.2 0.053 1.1E-06 58.6 12.3 24 94-117 21-44 (325)
256 COG1875 NYN ribonuclease and A 96.2 0.016 3.4E-07 60.7 7.8 53 71-125 224-280 (436)
257 KOG0733 Nuclear AAA ATPase (VC 96.2 0.023 4.9E-07 63.4 9.3 128 94-239 545-693 (802)
258 KOG2739 Leucine-rich acidic nu 96.1 0.002 4.4E-08 64.3 1.2 35 531-565 113-149 (260)
259 PRK10733 hflB ATP-dependent me 96.1 0.038 8.3E-07 65.8 12.1 127 95-239 186-336 (644)
260 PRK06921 hypothetical protein; 96.1 0.018 3.8E-07 60.4 8.3 36 94-129 117-154 (266)
261 KOG2004 Mitochondrial ATP-depe 96.1 0.011 2.4E-07 67.0 7.0 99 72-182 412-517 (906)
262 PRK07667 uridine kinase; Provi 96.1 0.012 2.5E-07 58.8 6.6 38 80-117 3-40 (193)
263 PRK05541 adenylylsulfate kinas 96.1 0.013 2.9E-07 57.5 6.9 35 94-128 7-42 (176)
264 cd01394 radB RadB. The archaea 96.1 0.039 8.4E-07 56.4 10.4 41 94-134 19-60 (218)
265 cd03216 ABC_Carb_Monos_I This 96.1 0.0096 2.1E-07 57.5 5.5 113 96-212 28-146 (163)
266 KOG0652 26S proteasome regulat 96.1 0.11 2.5E-06 51.4 12.6 191 65-273 165-392 (424)
267 PF08423 Rad51: Rad51; InterP 96.0 0.049 1.1E-06 56.8 10.9 52 95-147 39-97 (256)
268 KOG0744 AAA+-type ATPase [Post 96.0 0.016 3.6E-07 59.4 6.9 24 94-117 177-200 (423)
269 COG1618 Predicted nucleotide k 96.0 0.0086 1.9E-07 55.2 4.3 30 94-123 5-36 (179)
270 PRK14722 flhF flagellar biosyn 96.0 0.021 4.6E-07 62.1 8.1 86 94-181 137-226 (374)
271 smart00763 AAA_PrkA PrkA AAA d 96.0 0.0088 1.9E-07 64.1 5.0 46 72-117 52-101 (361)
272 cd03247 ABCC_cytochrome_bd The 96.0 0.031 6.7E-07 55.0 8.7 33 95-127 29-61 (178)
273 PRK04296 thymidine kinase; Pro 96.0 0.0055 1.2E-07 60.8 3.3 109 95-209 3-117 (190)
274 KOG2123 Uncharacterized conser 95.9 0.00049 1.1E-08 68.5 -4.2 99 442-565 19-123 (388)
275 KOG1514 Origin recognition com 95.9 0.22 4.7E-06 57.1 15.6 163 73-239 398-590 (767)
276 cd03214 ABC_Iron-Siderophores_ 95.9 0.028 6.2E-07 55.4 8.1 116 95-212 26-162 (180)
277 cd03281 ABC_MSH5_euk MutS5 hom 95.9 0.0069 1.5E-07 61.3 3.6 23 94-116 29-51 (213)
278 PRK11889 flhF flagellar biosyn 95.9 0.058 1.3E-06 58.4 10.5 37 94-130 241-278 (436)
279 PRK04301 radA DNA repair and r 95.9 0.061 1.3E-06 58.4 11.2 53 94-147 102-161 (317)
280 KOG0728 26S proteasome regulat 95.9 0.2 4.3E-06 49.6 13.1 177 93-286 180-387 (404)
281 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.06 1.3E-06 55.7 10.6 48 93-142 20-68 (237)
282 PRK06835 DNA replication prote 95.8 0.071 1.5E-06 57.5 11.4 35 95-129 184-219 (329)
283 cd03228 ABCC_MRP_Like The MRP 95.8 0.022 4.8E-07 55.6 7.0 33 95-127 29-61 (171)
284 KOG2739 Leucine-rich acidic nu 95.8 0.0052 1.1E-07 61.5 2.4 104 420-545 43-154 (260)
285 TIGR01817 nifA Nif-specific re 95.8 0.083 1.8E-06 62.1 12.8 65 68-132 193-258 (534)
286 PRK11608 pspF phage shock prot 95.8 0.058 1.3E-06 58.6 10.6 60 72-131 7-67 (326)
287 PLN03187 meiotic recombination 95.8 0.075 1.6E-06 57.4 11.1 55 93-148 125-186 (344)
288 PLN00020 ribulose bisphosphate 95.7 0.031 6.8E-07 59.5 7.9 28 93-120 147-175 (413)
289 PF13481 AAA_25: AAA domain; P 95.7 0.05 1.1E-06 54.4 9.2 37 96-132 34-81 (193)
290 cd03223 ABCD_peroxisomal_ALDP 95.7 0.048 1E-06 52.9 8.7 23 95-117 28-50 (166)
291 cd01121 Sms Sms (bacterial rad 95.7 0.039 8.4E-07 60.6 8.8 85 94-181 82-169 (372)
292 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.7 0.022 4.8E-07 53.7 5.9 33 95-127 27-59 (144)
293 PTZ00035 Rad51 protein; Provis 95.6 0.097 2.1E-06 56.9 11.5 54 93-147 117-177 (337)
294 PRK06547 hypothetical protein; 95.6 0.016 3.6E-07 56.1 5.0 32 84-117 7-38 (172)
295 PF00154 RecA: recA bacterial 95.6 0.053 1.2E-06 57.6 9.1 84 94-182 53-143 (322)
296 PRK08533 flagellar accessory p 95.6 0.06 1.3E-06 55.2 9.3 46 94-142 24-71 (230)
297 PRK09270 nucleoside triphospha 95.6 0.049 1.1E-06 56.0 8.7 26 92-117 31-56 (229)
298 PRK12727 flagellar biosynthesi 95.6 0.06 1.3E-06 60.7 9.7 85 94-180 350-438 (559)
299 PRK15429 formate hydrogenlyase 95.6 0.12 2.7E-06 62.6 13.4 62 70-131 375-437 (686)
300 cd00267 ABC_ATPase ABC (ATP-bi 95.6 0.04 8.6E-07 53.0 7.5 113 95-214 26-146 (157)
301 PF13238 AAA_18: AAA domain; P 95.6 0.0094 2E-07 55.0 3.0 21 97-117 1-21 (129)
302 TIGR03499 FlhF flagellar biosy 95.5 0.046 9.9E-07 58.0 8.5 38 94-131 194-234 (282)
303 TIGR02236 recomb_radA DNA repa 95.5 0.11 2.4E-06 56.3 11.6 54 93-147 94-154 (310)
304 COG2884 FtsE Predicted ATPase 95.5 0.056 1.2E-06 51.5 7.8 33 95-127 29-61 (223)
305 PRK13531 regulatory ATPase Rav 95.5 0.019 4.1E-07 64.0 5.5 42 72-117 21-62 (498)
306 TIGR02239 recomb_RAD51 DNA rep 95.5 0.086 1.9E-06 56.7 10.4 54 93-147 95-155 (316)
307 PLN03186 DNA repair protein RA 95.5 0.098 2.1E-06 56.7 10.9 55 93-148 122-183 (342)
308 COG0468 RecA RecA/RadA recombi 95.5 0.069 1.5E-06 55.6 9.2 49 92-140 58-107 (279)
309 PF01583 APS_kinase: Adenylyls 95.5 0.017 3.8E-07 54.2 4.4 34 95-128 3-37 (156)
310 PRK04328 hypothetical protein; 95.5 0.065 1.4E-06 55.8 9.1 39 94-132 23-62 (249)
311 PF07724 AAA_2: AAA domain (Cd 95.5 0.024 5.3E-07 54.9 5.5 41 94-134 3-45 (171)
312 COG0563 Adk Adenylate kinase a 95.4 0.021 4.7E-07 55.5 5.1 22 96-117 2-23 (178)
313 KOG2123 Uncharacterized conser 95.4 0.0011 2.3E-08 66.2 -4.0 97 419-517 18-123 (388)
314 PRK05022 anaerobic nitric oxid 95.4 0.11 2.4E-06 60.5 11.8 62 71-132 187-249 (509)
315 PRK06067 flagellar accessory p 95.4 0.094 2E-06 54.2 10.2 85 93-180 24-130 (234)
316 COG4608 AppF ABC-type oligopep 95.4 0.051 1.1E-06 55.3 7.7 120 95-216 40-178 (268)
317 PRK06002 fliI flagellum-specif 95.4 0.062 1.3E-06 59.7 9.0 88 95-182 166-266 (450)
318 cd01124 KaiC KaiC is a circadi 95.4 0.055 1.2E-06 53.8 7.9 43 96-140 1-44 (187)
319 KOG0729 26S proteasome regulat 95.4 0.045 9.8E-07 54.4 6.9 51 71-121 177-239 (435)
320 cd00561 CobA_CobO_BtuR ATP:cor 95.3 0.077 1.7E-06 50.2 8.3 113 95-209 3-139 (159)
321 cd02019 NK Nucleoside/nucleoti 95.3 0.013 2.9E-07 47.0 2.8 22 96-117 1-22 (69)
322 PRK15455 PrkA family serine pr 95.3 0.02 4.4E-07 64.6 5.0 54 68-121 73-130 (644)
323 TIGR00064 ftsY signal recognit 95.3 0.19 4E-06 52.9 12.0 38 93-130 71-109 (272)
324 TIGR01069 mutS2 MutS2 family p 95.3 0.017 3.6E-07 69.8 4.7 181 94-289 322-522 (771)
325 PRK12723 flagellar biosynthesi 95.3 0.12 2.5E-06 57.0 10.7 86 94-181 174-265 (388)
326 TIGR01359 UMP_CMP_kin_fam UMP- 95.3 0.038 8.2E-07 54.7 6.5 22 96-117 1-22 (183)
327 PF00485 PRK: Phosphoribulokin 95.3 0.014 3E-07 58.4 3.2 22 96-117 1-22 (194)
328 COG1102 Cmk Cytidylate kinase 95.3 0.021 4.6E-07 52.7 4.0 44 96-150 2-46 (179)
329 PRK14974 cell division protein 95.3 0.16 3.4E-06 54.9 11.4 53 94-148 140-196 (336)
330 PRK13765 ATP-dependent proteas 95.3 0.035 7.5E-07 65.1 6.9 79 66-149 26-106 (637)
331 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.083 1.8E-06 55.3 9.2 39 94-132 36-75 (259)
332 cd03115 SRP The signal recogni 95.3 0.064 1.4E-06 52.5 7.9 35 96-130 2-37 (173)
333 cd00544 CobU Adenosylcobinamid 95.2 0.057 1.2E-06 52.2 7.3 82 96-180 1-83 (169)
334 cd03238 ABC_UvrA The excision 95.2 0.042 9.1E-07 53.5 6.3 23 95-117 22-44 (176)
335 PTZ00301 uridine kinase; Provi 95.2 0.023 4.9E-07 57.0 4.6 24 94-117 3-26 (210)
336 cd01131 PilT Pilus retraction 95.2 0.018 3.8E-07 57.7 3.9 109 95-211 2-112 (198)
337 COG1428 Deoxynucleoside kinase 95.2 0.033 7.1E-07 54.3 5.4 49 94-144 4-52 (216)
338 PRK12726 flagellar biosynthesi 95.2 0.072 1.6E-06 57.5 8.5 87 94-181 206-296 (407)
339 COG4618 ArpD ABC-type protease 95.2 0.027 5.9E-07 61.7 5.4 22 96-117 364-385 (580)
340 PF14532 Sigma54_activ_2: Sigm 95.2 0.0048 1E-07 57.8 -0.3 24 94-117 21-44 (138)
341 cd02025 PanK Pantothenate kina 95.2 0.062 1.4E-06 54.6 7.7 37 96-132 1-40 (220)
342 COG5238 RNA1 Ran GTPase-activa 95.1 0.0026 5.6E-08 63.3 -2.3 40 506-545 87-131 (388)
343 cd03287 ABC_MSH3_euk MutS3 hom 95.1 0.011 2.4E-07 59.9 2.1 107 94-214 31-160 (222)
344 PRK05703 flhF flagellar biosyn 95.1 0.12 2.6E-06 58.0 10.4 38 94-131 221-261 (424)
345 PF02562 PhoH: PhoH-like prote 95.1 0.035 7.6E-07 54.9 5.4 49 76-128 5-56 (205)
346 PRK12724 flagellar biosynthesi 95.1 0.072 1.6E-06 58.5 8.1 24 94-117 223-246 (432)
347 COG4088 Predicted nucleotide k 95.0 0.03 6.6E-07 53.7 4.5 23 95-117 2-24 (261)
348 PF03205 MobB: Molybdopterin g 95.0 0.036 7.8E-07 51.7 5.0 37 95-131 1-39 (140)
349 PRK00771 signal recognition pa 95.0 0.15 3.2E-06 57.3 10.6 56 93-148 94-151 (437)
350 TIGR00150 HI0065_YjeE ATPase, 95.0 0.039 8.4E-07 50.4 5.0 23 95-117 23-45 (133)
351 PF03308 ArgK: ArgK protein; 95.0 0.035 7.6E-07 56.1 5.1 62 79-140 14-78 (266)
352 PRK08233 hypothetical protein; 95.0 0.019 4.2E-07 56.8 3.4 24 94-117 3-26 (182)
353 TIGR00554 panK_bact pantothena 95.0 0.081 1.8E-06 55.8 8.1 39 93-131 61-102 (290)
354 PRK05480 uridine/cytidine kina 95.0 0.021 4.5E-07 58.0 3.6 24 94-117 6-29 (209)
355 PF13671 AAA_33: AAA domain; P 95.0 0.02 4.3E-07 54.1 3.3 22 96-117 1-22 (143)
356 COG0194 Gmk Guanylate kinase [ 95.0 0.091 2E-06 50.2 7.5 24 95-118 5-28 (191)
357 TIGR00235 udk uridine kinase. 95.0 0.022 4.7E-07 57.6 3.7 24 94-117 6-29 (207)
358 COG0488 Uup ATPase components 94.9 0.079 1.7E-06 60.8 8.5 208 7-224 253-511 (530)
359 TIGR02655 circ_KaiC circadian 94.9 0.12 2.7E-06 59.5 10.2 84 94-180 263-363 (484)
360 COG3640 CooC CO dehydrogenase 94.9 0.048 1E-06 53.8 5.6 40 96-135 2-43 (255)
361 cd03243 ABC_MutS_homologs The 94.9 0.012 2.6E-07 59.3 1.6 22 95-116 30-51 (202)
362 cd01125 repA Hexameric Replica 94.9 0.1 2.2E-06 54.2 8.6 22 96-117 3-24 (239)
363 PRK06762 hypothetical protein; 94.9 0.022 4.8E-07 55.3 3.4 24 94-117 2-25 (166)
364 CHL00206 ycf2 Ycf2; Provisiona 94.9 0.18 3.9E-06 64.6 11.8 24 94-117 1630-1653(2281)
365 PF13306 LRR_5: Leucine rich r 94.9 0.058 1.3E-06 49.7 6.1 116 439-561 9-128 (129)
366 PF07726 AAA_3: ATPase family 94.8 0.018 4E-07 51.5 2.4 26 97-122 2-28 (131)
367 cd03283 ABC_MutS-like MutS-lik 94.8 0.033 7.1E-07 55.7 4.5 23 95-117 26-48 (199)
368 PRK10867 signal recognition pa 94.8 0.19 4E-06 56.3 10.8 24 94-117 100-123 (433)
369 COG0572 Udk Uridine kinase [Nu 94.8 0.027 5.8E-07 55.7 3.7 25 93-117 7-31 (218)
370 KOG0924 mRNA splicing factor A 94.8 0.095 2.1E-06 59.1 8.2 123 81-210 362-512 (1042)
371 COG1419 FlhF Flagellar GTP-bin 94.8 0.24 5.2E-06 53.7 11.0 85 94-180 203-291 (407)
372 COG1066 Sms Predicted ATP-depe 94.8 0.1 2.2E-06 56.0 8.0 84 95-182 94-180 (456)
373 PRK09519 recA DNA recombinatio 94.8 0.12 2.5E-06 61.7 9.4 84 93-181 59-149 (790)
374 TIGR03574 selen_PSTK L-seryl-t 94.8 0.083 1.8E-06 55.2 7.6 22 96-117 1-22 (249)
375 PRK00889 adenylylsulfate kinas 94.8 0.091 2E-06 51.5 7.4 24 94-117 4-27 (175)
376 COG1703 ArgK Putative periplas 94.8 0.042 9E-07 56.3 5.0 61 81-141 38-101 (323)
377 PRK03839 putative kinase; Prov 94.7 0.024 5.1E-07 56.0 3.3 22 96-117 2-23 (180)
378 PRK11823 DNA repair protein Ra 94.7 0.073 1.6E-06 60.4 7.5 85 94-181 80-167 (446)
379 PRK05342 clpX ATP-dependent pr 94.7 0.085 1.8E-06 58.8 7.9 49 73-121 73-136 (412)
380 PF06309 Torsin: Torsin; Inte 94.7 0.34 7.3E-06 43.5 9.9 45 73-117 27-76 (127)
381 PF07728 AAA_5: AAA domain (dy 94.7 0.067 1.4E-06 50.1 6.0 42 97-140 2-43 (139)
382 PF00560 LRR_1: Leucine Rich R 94.7 0.014 3.1E-07 34.6 0.9 21 512-532 1-21 (22)
383 PRK00625 shikimate kinase; Pro 94.7 0.026 5.6E-07 54.8 3.2 22 96-117 2-23 (173)
384 cd01135 V_A-ATPase_B V/A-type 94.6 0.17 3.7E-06 52.4 9.0 88 95-182 70-178 (276)
385 TIGR00416 sms DNA repair prote 94.6 0.12 2.5E-06 58.8 8.6 39 94-132 94-133 (454)
386 cd02027 APSK Adenosine 5'-phos 94.6 0.22 4.7E-06 47.2 9.2 22 96-117 1-22 (149)
387 TIGR03881 KaiC_arch_4 KaiC dom 94.6 0.31 6.7E-06 50.2 11.2 39 94-132 20-59 (229)
388 PRK08149 ATP synthase SpaL; Va 94.5 0.15 3.2E-06 56.7 9.1 87 95-182 152-253 (428)
389 PF00910 RNA_helicase: RNA hel 94.5 0.024 5.3E-07 50.2 2.5 21 97-117 1-21 (107)
390 PRK05439 pantothenate kinase; 94.5 0.2 4.2E-06 53.3 9.6 26 92-117 84-109 (311)
391 PRK06217 hypothetical protein; 94.5 0.06 1.3E-06 53.2 5.6 32 96-127 3-38 (183)
392 cd01122 GP4d_helicase GP4d_hel 94.5 0.23 5E-06 52.7 10.4 48 95-144 31-80 (271)
393 cd03282 ABC_MSH4_euk MutS4 hom 94.5 0.031 6.7E-07 56.0 3.4 24 94-117 29-52 (204)
394 COG2607 Predicted ATPase (AAA+ 94.5 0.21 4.5E-06 49.6 8.8 111 72-208 61-183 (287)
395 PF12775 AAA_7: P-loop contain 94.5 0.05 1.1E-06 57.2 5.1 86 80-180 22-110 (272)
396 TIGR01360 aden_kin_iso1 adenyl 94.5 0.029 6.4E-07 55.8 3.3 24 94-117 3-26 (188)
397 PRK13949 shikimate kinase; Pro 94.5 0.082 1.8E-06 51.3 6.2 23 95-117 2-24 (169)
398 TIGR01425 SRP54_euk signal rec 94.5 0.24 5.3E-06 55.0 10.6 24 94-117 100-123 (429)
399 PRK04040 adenylate kinase; Pro 94.5 0.032 6.9E-07 55.1 3.4 24 94-117 2-25 (188)
400 PRK06995 flhF flagellar biosyn 94.4 0.21 4.6E-06 56.4 10.2 55 94-148 256-314 (484)
401 COG1124 DppF ABC-type dipeptid 94.4 0.045 9.8E-07 54.5 4.3 22 96-117 35-56 (252)
402 PRK13768 GTPase; Provisional 94.4 0.16 3.4E-06 53.1 8.6 36 94-129 2-38 (253)
403 TIGR00390 hslU ATP-dependent p 94.4 0.11 2.4E-06 56.8 7.6 73 73-145 14-103 (441)
404 cd01136 ATPase_flagellum-secre 94.4 0.19 4.2E-06 53.7 9.3 87 95-182 70-171 (326)
405 PF00006 ATP-synt_ab: ATP synt 94.4 0.12 2.6E-06 51.9 7.4 86 95-181 16-116 (215)
406 PRK05922 type III secretion sy 94.4 0.18 3.9E-06 56.0 9.3 87 95-182 158-259 (434)
407 TIGR00764 lon_rel lon-related 94.4 0.11 2.3E-06 61.4 8.1 74 70-148 17-92 (608)
408 PTZ00088 adenylate kinase 1; P 94.4 0.038 8.2E-07 56.3 3.8 22 96-117 8-29 (229)
409 PRK14721 flhF flagellar biosyn 94.3 0.18 3.9E-06 56.0 9.2 56 94-149 191-250 (420)
410 TIGR03498 FliI_clade3 flagella 94.3 0.13 2.9E-06 57.1 8.1 88 95-182 141-242 (418)
411 PRK08927 fliI flagellum-specif 94.3 0.19 4.1E-06 55.9 9.3 87 95-182 159-260 (442)
412 KOG0726 26S proteasome regulat 94.3 0.55 1.2E-05 47.8 11.5 56 66-121 180-247 (440)
413 KOG0736 Peroxisome assembly fa 94.3 0.94 2E-05 52.6 14.7 100 65-182 666-776 (953)
414 PRK05201 hslU ATP-dependent pr 94.3 0.16 3.5E-06 55.6 8.5 74 73-146 17-107 (443)
415 PRK12597 F0F1 ATP synthase sub 94.3 0.14 3.1E-06 57.3 8.4 88 95-182 144-249 (461)
416 smart00534 MUTSac ATPase domai 94.3 0.016 3.6E-07 57.3 1.0 21 96-116 1-21 (185)
417 PF08433 KTI12: Chromatin asso 94.3 0.081 1.7E-06 55.4 6.1 23 95-117 2-24 (270)
418 PRK14723 flhF flagellar biosyn 94.3 0.23 4.9E-06 59.1 10.3 83 94-180 185-273 (767)
419 KOG3864 Uncharacterized conser 94.2 0.0076 1.6E-07 57.8 -1.6 69 832-908 123-191 (221)
420 PF06745 KaiC: KaiC; InterPro 94.2 0.076 1.6E-06 54.6 5.6 86 94-182 19-127 (226)
421 cd03284 ABC_MutS1 MutS1 homolo 94.2 0.062 1.3E-06 54.5 4.9 22 95-116 31-52 (216)
422 KOG1532 GTPase XAB1, interacts 94.2 0.042 9.1E-07 55.0 3.4 29 93-121 18-47 (366)
423 TIGR03305 alt_F1F0_F1_bet alte 94.2 0.18 3.8E-06 56.3 8.6 88 95-182 139-244 (449)
424 cd02024 NRK1 Nicotinamide ribo 94.1 0.034 7.3E-07 54.5 2.7 22 96-117 1-22 (187)
425 cd02023 UMPK Uridine monophosp 94.1 0.033 7.1E-07 56.0 2.7 22 96-117 1-22 (198)
426 PF00625 Guanylate_kin: Guanyl 94.1 0.057 1.2E-06 53.4 4.4 37 94-130 2-39 (183)
427 COG3854 SpoIIIAA ncharacterize 94.1 0.097 2.1E-06 51.3 5.7 119 83-210 128-255 (308)
428 TIGR02322 phosphon_PhnN phosph 94.1 0.04 8.7E-07 54.3 3.3 23 95-117 2-24 (179)
429 COG1126 GlnQ ABC-type polar am 94.1 0.056 1.2E-06 52.7 4.0 33 96-128 30-62 (240)
430 PRK07196 fliI flagellum-specif 94.1 0.19 4.1E-06 56.0 8.6 24 94-117 155-178 (434)
431 COG0465 HflB ATP-dependent Zn 94.1 0.22 4.8E-06 57.2 9.3 173 70-262 149-355 (596)
432 PRK08972 fliI flagellum-specif 94.1 0.16 3.5E-06 56.2 8.0 87 95-182 163-264 (444)
433 PRK00131 aroK shikimate kinase 94.0 0.042 9.1E-07 53.9 3.3 24 94-117 4-27 (175)
434 TIGR00959 ffh signal recogniti 94.0 0.42 9.2E-06 53.5 11.4 37 94-130 99-137 (428)
435 PRK09099 type III secretion sy 94.0 0.2 4.3E-06 56.0 8.7 88 95-182 164-265 (441)
436 PF01078 Mg_chelatase: Magnesi 94.0 0.09 2E-06 51.8 5.3 45 69-117 1-45 (206)
437 PRK00409 recombination and DNA 94.0 0.22 4.8E-06 60.6 9.8 174 94-289 327-527 (782)
438 cd02028 UMPK_like Uridine mono 94.0 0.049 1.1E-06 53.5 3.5 22 96-117 1-22 (179)
439 COG0396 sufC Cysteine desulfur 94.0 0.21 4.5E-06 49.4 7.6 52 169-220 161-216 (251)
440 PRK13947 shikimate kinase; Pro 94.0 0.043 9.3E-07 53.6 3.1 22 96-117 3-24 (171)
441 cd00227 CPT Chloramphenicol (C 93.9 0.045 9.8E-07 53.6 3.2 23 95-117 3-25 (175)
442 COG0003 ArsA Predicted ATPase 93.9 0.09 1.9E-06 56.1 5.6 47 94-140 2-49 (322)
443 COG0467 RAD55 RecA-superfamily 93.9 0.072 1.6E-06 56.1 4.9 40 93-132 22-62 (260)
444 PF10236 DAP3: Mitochondrial r 93.9 1.7 3.6E-05 46.8 15.3 46 219-264 258-305 (309)
445 TIGR00382 clpX endopeptidase C 93.9 0.13 2.7E-06 57.1 6.8 49 73-121 79-144 (413)
446 PF00005 ABC_tran: ABC transpo 93.9 0.05 1.1E-06 50.8 3.3 33 95-127 12-44 (137)
447 cd02021 GntK Gluconate kinase 93.9 0.041 9E-07 52.4 2.7 22 96-117 1-22 (150)
448 PLN02318 phosphoribulokinase/u 93.8 0.074 1.6E-06 60.5 4.9 32 86-117 57-88 (656)
449 PRK14738 gmk guanylate kinase; 93.8 0.053 1.1E-06 54.7 3.5 29 89-117 8-36 (206)
450 cd00071 GMPK Guanosine monopho 93.8 0.05 1.1E-06 50.7 3.0 22 96-117 1-22 (137)
451 cd02020 CMPK Cytidine monophos 93.8 0.044 9.5E-07 51.9 2.8 22 96-117 1-22 (147)
452 COG1936 Predicted nucleotide k 93.8 0.046 1E-06 51.3 2.7 20 96-115 2-21 (180)
453 KOG3864 Uncharacterized conser 93.7 0.0074 1.6E-07 57.9 -2.7 68 856-932 121-188 (221)
454 PRK07132 DNA polymerase III su 93.7 2.3 4.9E-05 45.3 15.6 163 81-267 6-184 (299)
455 TIGR03263 guanyl_kin guanylate 93.6 0.051 1.1E-06 53.6 3.0 23 95-117 2-24 (180)
456 cd00984 DnaB_C DnaB helicase C 93.6 0.31 6.6E-06 50.7 9.0 47 95-143 14-62 (242)
457 TIGR01040 V-ATPase_V1_B V-type 93.6 0.25 5.5E-06 54.8 8.5 88 95-182 142-259 (466)
458 PRK05688 fliI flagellum-specif 93.6 0.26 5.6E-06 55.0 8.7 87 95-182 169-270 (451)
459 PRK05917 DNA polymerase III su 93.6 1.7 3.7E-05 45.7 14.2 38 79-117 5-42 (290)
460 PRK03846 adenylylsulfate kinas 93.6 0.097 2.1E-06 52.4 4.9 24 94-117 24-47 (198)
461 PF00560 LRR_1: Leucine Rich R 93.6 0.03 6.5E-07 33.1 0.7 21 467-487 1-21 (22)
462 PRK10751 molybdopterin-guanine 93.5 0.066 1.4E-06 51.5 3.5 24 94-117 6-29 (173)
463 PRK14529 adenylate kinase; Pro 93.5 0.21 4.6E-06 50.4 7.3 81 97-181 3-87 (223)
464 PRK07721 fliI flagellum-specif 93.5 0.31 6.8E-06 54.7 9.3 89 94-182 158-260 (438)
465 TIGR03496 FliI_clade1 flagella 93.5 0.26 5.6E-06 54.8 8.5 87 95-182 138-239 (411)
466 TIGR02030 BchI-ChlI magnesium 93.5 0.11 2.3E-06 56.3 5.4 46 70-117 3-48 (337)
467 TIGR02329 propionate_PrpR prop 93.5 0.49 1.1E-05 54.7 10.9 48 70-117 211-258 (526)
468 KOG0736 Peroxisome assembly fa 93.4 0.92 2E-05 52.7 12.6 170 70-262 400-598 (953)
469 PRK10416 signal recognition pa 93.4 0.54 1.2E-05 50.6 10.6 37 93-129 113-150 (318)
470 CHL00081 chlI Mg-protoporyphyr 93.4 0.097 2.1E-06 56.6 4.9 49 67-117 13-61 (350)
471 PRK10078 ribose 1,5-bisphospho 93.4 0.06 1.3E-06 53.4 3.1 23 95-117 3-25 (186)
472 PF02367 UPF0079: Uncharacteri 93.4 0.095 2.1E-06 47.1 4.0 32 82-117 7-38 (123)
473 TIGR00176 mobB molybdopterin-g 93.4 0.095 2E-06 49.9 4.3 31 96-126 1-33 (155)
474 KOG0927 Predicted transporter 93.4 0.21 4.6E-06 55.4 7.3 23 95-117 102-124 (614)
475 PF03969 AFG1_ATPase: AFG1-lik 93.4 0.066 1.4E-06 58.5 3.6 25 93-117 61-85 (362)
476 PRK06793 fliI flagellum-specif 93.4 0.3 6.6E-06 54.3 8.7 88 95-182 157-258 (432)
477 cd03269 ABC_putative_ATPase Th 93.4 0.095 2.1E-06 53.2 4.6 33 95-127 27-59 (210)
478 COG2019 AdkA Archaeal adenylat 93.4 0.074 1.6E-06 49.4 3.2 24 94-117 4-27 (189)
479 cd03222 ABC_RNaseL_inhibitor T 93.3 0.1 2.2E-06 50.9 4.5 32 95-126 26-57 (177)
480 PRK07594 type III secretion sy 93.3 0.23 5.1E-06 55.2 7.8 87 95-182 156-257 (433)
481 PRK13948 shikimate kinase; Pro 93.3 0.072 1.6E-06 52.1 3.4 24 94-117 10-33 (182)
482 TIGR00960 3a0501s02 Type II (G 93.3 0.098 2.1E-06 53.4 4.5 33 95-127 30-62 (216)
483 PF13306 LRR_5: Leucine rich r 93.3 0.17 3.7E-06 46.6 5.8 106 457-568 3-112 (129)
484 PHA02244 ATPase-like protein 93.3 0.21 4.6E-06 53.8 7.0 35 79-117 108-142 (383)
485 cd03229 ABC_Class3 This class 93.3 0.11 2.3E-06 51.1 4.6 33 95-127 27-59 (178)
486 PTZ00185 ATPase alpha subunit; 93.3 0.28 6.1E-06 54.9 8.1 87 95-182 190-301 (574)
487 PF08477 Miro: Miro-like prote 93.2 0.07 1.5E-06 48.3 3.1 21 97-117 2-22 (119)
488 TIGR01166 cbiO cobalt transpor 93.2 0.1 2.2E-06 51.9 4.5 33 95-127 19-51 (190)
489 PRK10463 hydrogenase nickel in 93.2 0.21 4.6E-06 52.2 6.8 29 93-121 103-132 (290)
490 PRK05057 aroK shikimate kinase 93.2 0.07 1.5E-06 52.0 3.1 23 95-117 5-27 (172)
491 PRK00300 gmk guanylate kinase; 93.2 0.067 1.5E-06 54.1 3.2 24 94-117 5-28 (205)
492 PF00158 Sigma54_activat: Sigm 93.2 0.15 3.2E-06 49.3 5.3 58 74-131 2-60 (168)
493 cd00464 SK Shikimate kinase (S 93.2 0.068 1.5E-06 51.1 3.0 21 97-117 2-22 (154)
494 TIGR03880 KaiC_arch_3 KaiC dom 93.2 0.5 1.1E-05 48.5 9.6 39 94-132 16-55 (224)
495 cd03255 ABC_MJ0796_Lo1CDE_FtsE 93.2 0.1 2.2E-06 53.3 4.5 33 95-127 31-63 (218)
496 PRK13946 shikimate kinase; Pro 93.2 0.073 1.6E-06 52.6 3.3 24 94-117 10-33 (184)
497 PRK12339 2-phosphoglycerate ki 93.2 0.08 1.7E-06 52.6 3.5 24 94-117 3-26 (197)
498 TIGR01313 therm_gnt_kin carboh 93.2 0.058 1.3E-06 52.2 2.5 21 97-117 1-21 (163)
499 cd00820 PEPCK_HprK Phosphoenol 93.2 0.08 1.7E-06 46.2 3.0 21 95-115 16-36 (107)
500 PF13086 AAA_11: AAA domain; P 93.2 0.15 3.2E-06 52.7 5.8 22 96-117 19-40 (236)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-81 Score=738.93 Aligned_cols=550 Identities=28% Similarity=0.438 Sum_probs=442.0
Q ss_pred CccccCCc-ChHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-CCCCcCccCCCCCCcccccchHHHHHHHHHHhhcCCC
Q 002037 15 GRCHTWHL-DWRKRHQLSRVATKKTVEIIEHIRLSNFESISF-PARSADVRSIPTPEFVPLKSALEVIKSVMKLLKDNSI 92 (977)
Q Consensus 15 ~~~~~~~~-~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~ 92 (977)
-|+.+++. +...-+.+++++-++.+.++.+..++.|..+.. ..+++.....|...... +|.+..++++.+.|.+++
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~- 178 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD- 178 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC-
Confidence 34444332 334446677777777777777766666666554 22222333334333333 899999999999999888
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh----cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccch---HHHHHHHHHHH
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ----EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDV---EVLRAAFLSER 165 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~l~~~ 165 (977)
..+++|+||||+||||||++++|+ +.+||.++||+||++++...++++|++.++....... .+..+..+.+.
T Consensus 179 -~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~ 257 (889)
T KOG4658|consen 179 -VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNL 257 (889)
T ss_pred -CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHH
Confidence 599999999999999999999999 7899999999999999999999999998887444333 35666677777
Q ss_pred HHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCC--C
Q 002037 166 LKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLP--E 242 (977)
Q Consensus 166 l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~--~ 242 (977)
|+ ++||+|||||||+..+|+.++.+++....||+|++|||+.+||.. +++...++++.|+.+|||+||++.++.. .
T Consensus 258 L~-~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~ 336 (889)
T KOG4658|consen 258 LE-GKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG 336 (889)
T ss_pred hc-cCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc
Confidence 76 899999999999999999999999999899999999999999998 8888899999999999999999999833 3
Q ss_pred CChhhHHHHHHHHHHhCCChhHHHHHHHHhcCC-ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHH
Q 002037 243 GTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK-PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCL 321 (977)
Q Consensus 243 ~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f 321 (977)
..+..+++|++++++|+|+|||++++|+.|+.+ +.++|+++.+.+.+....+.+++.+.+++++++||+.||+++|.||
T Consensus 337 ~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CF 416 (889)
T KOG4658|consen 337 SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCF 416 (889)
T ss_pred ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHH
Confidence 445689999999999999999999999999966 7789999999988875556677778999999999999999999999
Q ss_pred hhhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhcccccCCC---CcccccchhhHHHHHHHHHh
Q 002037 322 QFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLLLEGD---RESCFRIHDDTRKVVKYIAA 398 (977)
Q Consensus 322 l~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~---~~~~~~mHdlv~~~a~~i~~ 398 (977)
+|||+||+||.|+++.|+.+||||||+.+....+.+.+.+.+|+.+|++++|++... ...+|+|||+|||+|.++++
T Consensus 417 LycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias 496 (889)
T KOG4658|consen 417 LYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIAS 496 (889)
T ss_pred HhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhc
Confidence 999999999999999999999999999875555566667777999999999998765 44689999999999999998
Q ss_pred -----hcCCceeecCC-cCCCCC-cccccCccEEEeccCCCccCCCCCCCCCccEEEccCCC--CCCCChhHHhcCCCcc
Q 002037 399 -----REGDHFIAEPG-MKKGWP-REDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNP--FADIPNAFFEHTREIK 469 (977)
Q Consensus 399 -----~e~~~~~~~~~-~~~~~~-~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~Lr 469 (977)
+++ .++.++ .....| ..+....|++++.++.+..++....+++|++|.+.+|. +..++..+|..++.||
T Consensus 497 ~~~~~~e~--~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~Lr 574 (889)
T KOG4658|consen 497 DFGKQEEN--QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLR 574 (889)
T ss_pred cccccccc--eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceE
Confidence 565 233322 222233 23367889999999999999988899999999999997 7888899999999999
Q ss_pred EEEccCCc-CCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCC
Q 002037 470 NLDLSSTN-ISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQ 548 (977)
Q Consensus 470 ~L~l~~~~-~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~ 548 (977)
+|||++|. +..+|.+|+.|.+||||+++++ .+..+|.++++|++|.+|++..+....
T Consensus 575 VLDLs~~~~l~~LP~~I~~Li~LryL~L~~t----------------------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 575 VLDLSGNSSLSKLPSSIGELVHLRYLDLSDT----------------------GISHLPSGLGNLKKLIYLNLEVTGRLE 632 (889)
T ss_pred EEECCCCCccCcCChHHhhhhhhhcccccCC----------------------CccccchHHHHHHhhheeccccccccc
Confidence 99999764 6678888877777777766665 566777778888888888887776555
Q ss_pred ccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEee
Q 002037 549 VIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIH 601 (977)
Q Consensus 549 ~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 601 (977)
.+| ++...|++|++|.+.... ...+...+.++.++++|+.+.+.
T Consensus 633 ~~~-~i~~~L~~Lr~L~l~~s~--------~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 633 SIP-GILLELQSLRVLRLPRSA--------LSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccc-chhhhcccccEEEeeccc--------cccchhhHHhhhcccchhhheee
Confidence 554 435668888888775532 11334445556666666666554
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-64 Score=634.08 Aligned_cols=506 Identities=19% Similarity=0.260 Sum_probs=323.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcccccCCC-----------CcCccCCCCCCcccccchHHHHHHHHHHhhcCCCceeEEEEE
Q 002037 32 RVATKKTVEIIEHIRLSNFESISFPAR-----------SADVRSIPTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVY 100 (977)
Q Consensus 32 ~~i~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~ 100 (977)
.++++-++.+.++.....+........ .......+..++.+++|+++.++++..++.-+..++++|+||
T Consensus 134 ~~~~~w~~al~~~~~~~g~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~ 213 (1153)
T PLN03210 134 DEKIQWKQALTDVANILGYHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIW 213 (1153)
T ss_pred hHHHHHHHHHHHHhCcCceecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEE
Confidence 356666667777654444332111100 001223344556678899999999998886655669999999
Q ss_pred cCCCChHHHHHHHHHhh-cCCCCEEEEEEe---CCCC-----------C-HHHHHHHHHHHhhhccccchHHHHHHHHHH
Q 002037 101 GSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV---TQTP-----------D-VKRVQDEIARFLNTELEGDVEVLRAAFLSE 164 (977)
Q Consensus 101 G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~---~~~~-----------~-~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 164 (977)
||||+||||||+++|++ ..+|++.+|+.- +... . ...++++++..+....... ......+++
T Consensus 214 G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~--~~~~~~~~~ 291 (1153)
T PLN03210 214 GSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK--IYHLGAMEE 291 (1153)
T ss_pred cCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc--cCCHHHHHH
Confidence 99999999999999999 889999888742 1110 0 1233444444332211110 001234566
Q ss_pred HHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhccCCceEEccCCCHHHHHHHHHHhcCCCC-C
Q 002037 165 RLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDEDRLILFKKKAGLPE-G 243 (977)
Q Consensus 165 ~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~-~ 243 (977)
++. ++|+||||||||+..+|+.+.....+.++||+||||||++.++...+..++|+++.|+.++||+||+++|+... .
T Consensus 292 ~L~-~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~ 370 (1153)
T PLN03210 292 RLK-HRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP 370 (1153)
T ss_pred HHh-CCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC
Confidence 665 79999999999999999988776667789999999999999998887788999999999999999999998443 4
Q ss_pred ChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchh-hHHHHHh
Q 002037 244 TKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLET-VAKSCLQ 322 (977)
Q Consensus 244 ~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~~fl 322 (977)
++++.+++++|+++|+|+||||+++|++|++++..+|+.+++++++.. ..+|.++|++||+.|++ ..|.||+
T Consensus 371 ~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl 443 (1153)
T PLN03210 371 PDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFR 443 (1153)
T ss_pred cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhh
Confidence 556889999999999999999999999999999999999999987643 26899999999999987 5999999
Q ss_pred hhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhcccccCCCCcccccchhhHHHHHHHHHhhcCC
Q 002037 323 FSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLLLEGDRESCFRIHDDTRKVVKYIAAREGD 402 (977)
Q Consensus 323 ~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~mHdlv~~~a~~i~~~e~~ 402 (977)
++|+|+.+..+ ..+..|++.+.+.. ...++.|++++|++... +.++|||++|++|+.++.++..
T Consensus 444 ~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~--~~~~MHdLl~~~~r~i~~~~~~ 507 (1153)
T PLN03210 444 HIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE--DIVEMHSLLQEMGKEIVRAQSN 507 (1153)
T ss_pred eehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC--CeEEhhhHHHHHHHHHHHhhcC
Confidence 99999887654 34667777764421 11378899999997643 5799999999999999976631
Q ss_pred ceeecCCcCCCCCccc----------ccCccEEEeccCCCccCC----CCCCCCCccEEEccCCCC-------CCCChhH
Q 002037 403 HFIAEPGMKKGWPRED----------LQNCEKLSLMDGNVTALP----DQPKCPRLTTLFLQNNPF-------ADIPNAF 461 (977)
Q Consensus 403 ~~~~~~~~~~~~~~~~----------~~~~~~l~l~~~~~~~l~----~~~~~~~L~~L~l~~~~~-------~~~~~~~ 461 (977)
. .+.....|...+ ..+++.+++....+..+. .+..+++|+.|.+..+.. ..+|.++
T Consensus 508 ~---~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~ 584 (1153)
T PLN03210 508 E---PGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF 584 (1153)
T ss_pred C---CCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcch
Confidence 0 011111111110 223344443322222111 123444555554443321 0122222
Q ss_pred HhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCCCCccEEEccCC-CCcccCccccCCCCCCEE
Q 002037 462 FEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLILKGS-RIVELPNGIGTVSNLKLL 539 (977)
Q Consensus 462 ~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L 539 (977)
..-...||.|.+.++.+..+|..+ ...+|+.|++.++.+.. +..+..+++|++|+++++ .+..+|. ++.+++|++|
T Consensus 585 ~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L 662 (1153)
T PLN03210 585 DYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETL 662 (1153)
T ss_pred hhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEE
Confidence 111223455555555444444444 23444555555444444 344444445555555443 2334442 4444455555
Q ss_pred EcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 540 DLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 540 ~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
++++|..+..+|.. ++.+++|+.|++++|
T Consensus 663 ~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c 691 (1153)
T PLN03210 663 KLSDCSSLVELPSS-IQYLNKLEDLDMSRC 691 (1153)
T ss_pred EecCCCCccccchh-hhccCCCCEEeCCCC
Confidence 55444444444444 444444444444443
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8.6e-43 Score=375.79 Aligned_cols=274 Identities=30% Similarity=0.510 Sum_probs=222.4
Q ss_pred hHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc-
Q 002037 76 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE- 151 (977)
Q Consensus 76 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~- 151 (977)
|+.+++++.+.|.+...+.++|+|+||||+||||||++++++ ..+|+.++|++++...+...+++.|++.++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999985556999999999999999999999988 8899999999999999999999999999987632
Q ss_pred ---cchHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhccC-CceEEccCCCH
Q 002037 152 ---GDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEMES-TNYVQVEELTD 227 (977)
Q Consensus 152 ---~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~-~~~~~l~~L~~ 227 (977)
..........+.+.+. ++++||||||||+...|+.+...++....|++||||||+..++..+.. ...|++++|+.
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~ 159 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSE 159 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--H
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3344557777888886 679999999999999998888777777789999999999999877665 57899999999
Q ss_pred HHHHHHHHHhcCCCC--CChhhHHHHHHHHHHhCCChhHHHHHHHHhcCC-ChhHHHHHHHHHhhCCCCCCCCchHHHHH
Q 002037 228 EDRLILFKKKAGLPE--GTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK-PVREWNEAIKRKKASTPINVEGIPEEVVL 304 (977)
Q Consensus 228 ~~~~~lf~~~~~~~~--~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~-~~~~w~~~l~~l~~~~~~~~~~~~~~i~~ 304 (977)
+||++||.+.++... ..+..++.+++|+++|+|+||||+++|++|+.+ +..+|..+++++..... +..+....++.
T Consensus 160 ~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~-~~~~~~~~~~~ 238 (287)
T PF00931_consen 160 EEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLR-ESRDYDRSVFS 238 (287)
T ss_dssp HHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHT-CSSGSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 999999999998433 345667889999999999999999999999632 78899999998877653 22223488999
Q ss_pred HHHHhhccchhhHHHHHhhhcCCCCCCCcChHHHHHHHhhhcccccc
Q 002037 305 CVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQV 351 (977)
Q Consensus 305 ~l~~sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~ 351 (977)
++.+||+.||+++|.||+|||+||+++.|+++.++++|+++||+...
T Consensus 239 ~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 239 ALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 99999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=1.7e-29 Score=318.97 Aligned_cols=473 Identities=17% Similarity=0.159 Sum_probs=222.8
Q ss_pred ccCccEEEeccCCCc-cCCCC--CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC-CCCCCcccCCCCCeE
Q 002037 419 LQNCEKLSLMDGNVT-ALPDQ--PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRSL 494 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~-~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L 494 (977)
+++++.|++++|.+. .+|.. ..+.+|+.|++++|.+....+. ..+++|++|++++|.+. .+|..++.+++|++|
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 169 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL 169 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence 455566666655553 34332 2555666666666555432221 23555666666666554 345555666666666
Q ss_pred ecCCCCCCC--CccccCCCCccEEEccCCCCc-ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcC
Q 002037 495 HLENTHLND--ASLIREFGELEVLILKGSRIV-ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFG 571 (977)
Q Consensus 495 ~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~ 571 (977)
++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|.+...+|.. ++++++|++|++++|..
T Consensus 170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence 666665443 455556666666666665544 45555566666666666666555555554 55566666666555421
Q ss_pred CccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCC-------CCcceeeeccc
Q 002037 572 DWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEI-------APKRSMHLKNL 644 (977)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~l~l~~~ 644 (977)
. ......++++++|+.|+++.+......+..+..+++|+.|++..|...... +.++.+.+.+.
T Consensus 249 ~----------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 249 T----------GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred c----------cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 1 112234455555555555554433322223334455555555443211110 11111111111
Q ss_pred c--hhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccce
Q 002037 645 S--NSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKE 722 (977)
Q Consensus 645 ~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 722 (977)
. ...|.++.. +++|+.|++.++.-...++. ....+++|+.|++++|.+.+..|.. +..+++|+.|++.++.....
T Consensus 319 ~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~n~l~~~ 395 (968)
T PLN00113 319 NFTGKIPVALTS-LPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFSNSLEGE 395 (968)
T ss_pred ccCCcCChhHhc-CCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcCCEeccc
Confidence 1 112222222 34555555554432212211 1233555666666655554443322 23345555555555432211
Q ss_pred eeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccc
Q 002037 723 VFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDL 802 (977)
Q Consensus 723 ~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 802 (977)
.+. ....+++|+.|.+.++.-... .+..+..+++|+.|+++++. +....+ .....+++|+.|++++|..
T Consensus 396 ~p~------~~~~~~~L~~L~L~~n~l~~~---~p~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 396 IPK------SLGACRSLRRVRLQDNSFSGE---LPSEFTKLPLVYFLDISNNN-LQGRIN-SRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred CCH------HHhCCCCCCEEECcCCEeeeE---CChhHhcCCCCCEEECcCCc-ccCccC-hhhccCCCCcEEECcCcee
Confidence 111 111356666666666532111 11223456666666666643 333222 2234566667777666654
Q ss_pred ccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccc
Q 002037 803 MEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDE 882 (977)
Q Consensus 803 l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~ 882 (977)
...++... ..++|+.|++++|.-.... ...+..+++|+.|++++|.-...+
T Consensus 465 ~~~~p~~~---------------------~~~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~------ 515 (968)
T PLN00113 465 FGGLPDSF---------------------GSKRLENLDLSRNQFSGAV--PRKLGSLSELMQLKLSENKLSGEI------ 515 (968)
T ss_pred eeecCccc---------------------ccccceEEECcCCccCCcc--ChhhhhhhccCEEECcCCcceeeC------
Confidence 43332211 2355666666555432221 122445556666666655432222
Q ss_pred cccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCCCCCCccccccccch
Q 002037 883 EKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFKAHS 953 (977)
Q Consensus 883 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~~~~ 953 (977)
|..+..+++|+.|+|++|.-...++.. +. .+++|++|++++|.-...+|..+..+++|+.++++.
T Consensus 516 ---p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 516 ---PDELSSCKKLVSLDLSHNQLSGQIPAS-FS--EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred ---ChHHcCccCCCEEECCCCcccccCChh-Hh--CcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 233445556666666654422222221 11 245566666665555445555555555566555543
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=311.71 Aligned_cols=465 Identities=20% Similarity=0.206 Sum_probs=304.7
Q ss_pred cCccEEEeccCCCccCC--CCCCCCCccEEEccCCCCC-CCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEec
Q 002037 420 QNCEKLSLMDGNVTALP--DQPKCPRLTTLFLQNNPFA-DIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 496 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 496 (977)
.+++.|+++++.+.... .+..+++|++|++++|.+. .+|...+.++++|++|++++|.+....+ .+.+++|++|+|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEEC
Confidence 46888999988776532 2467899999999999986 6788888899999999999999874332 256899999999
Q ss_pred CCCCCCC--CccccCCCCccEEEccCCCCc-ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCc
Q 002037 497 ENTHLND--ASLIREFGELEVLILKGSRIV-ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 573 (977)
Q Consensus 497 ~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 573 (977)
++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|++++|.+...+|.. ++++++|++|+++++...
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~- 225 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS- 225 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC-
Confidence 9999875 788999999999999999876 78999999999999999999988888887 899999999999887432
Q ss_pred cccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHH
Q 002037 574 EVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVK 653 (977)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 653 (977)
......++.+++|+.|+++.+......+..++.+++|+.|.+..+.... ..|.++.
T Consensus 226 ---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~---------------~~p~~l~ 281 (968)
T PLN00113 226 ---------GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG---------------PIPPSIF 281 (968)
T ss_pred ---------CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec---------------cCchhHh
Confidence 2234567889999999999887765555566788999999987764221 1222222
Q ss_pred HHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeecccccccc
Q 002037 654 LLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQ 733 (977)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 733 (977)
. +++|+.|++.++.-...++. ....+++|+.|++++|.+.+..|. .+..+++|+.|++++|.....++.. .
T Consensus 282 ~-l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~------l 352 (968)
T PLN00113 282 S-LQKLISLDLSDNSLSGEIPE-LVIQLQNLEILHLFSNNFTGKIPV-ALTSLPRLQVLQLWSNKFSGEIPKN------L 352 (968)
T ss_pred h-ccCcCEEECcCCeeccCCCh-hHcCCCCCcEEECCCCccCCcCCh-hHhcCCCCCEEECcCCCCcCcCChH------H
Confidence 2 34556666654432111111 123455666666666655444332 2445556666666555322222110 1
Q ss_pred ccccccceeeccCccCcceeee---------------------cccccccccccceEEEeecCCcccccchhHHhhcCCC
Q 002037 734 AGLKRLRELVLVGLPKVLTIWK---------------------GNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNL 792 (977)
Q Consensus 734 ~~~~~L~~L~L~~~~~L~~i~~---------------------~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L 792 (977)
..+++|+.|+++++.-...++. .+.....+++|+.|++.+|. +.... +..+..+++|
T Consensus 353 ~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~-l~~~~-p~~~~~l~~L 430 (968)
T PLN00113 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS-FSGEL-PSEFTKLPLV 430 (968)
T ss_pred hCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE-eeeEC-ChhHhcCCCC
Confidence 1245555555554421111100 01112234445555554432 22111 1223344555
Q ss_pred ceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccc
Q 002037 793 EDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNH 872 (977)
Q Consensus 793 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~ 872 (977)
+.|+++++.....++. ....+++|+.|++.+|.-...++. ....++|+.|++++|..
T Consensus 431 ~~L~Ls~N~l~~~~~~--------------------~~~~l~~L~~L~L~~n~~~~~~p~---~~~~~~L~~L~ls~n~l 487 (968)
T PLN00113 431 YFLDISNNNLQGRINS--------------------RKWDMPSLQMLSLARNKFFGGLPD---SFGSKRLENLDLSRNQF 487 (968)
T ss_pred CEEECcCCcccCccCh--------------------hhccCCCCcEEECcCceeeeecCc---ccccccceEEECcCCcc
Confidence 5555544432211111 012478888888888875544322 23457888888888864
Q ss_pred cceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCCCCCCccccccccc
Q 002037 873 MERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFKAH 952 (977)
Q Consensus 873 l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~~~ 952 (977)
...+ +..+..+++|+.|++++|.-...+|.. +. .+++|++|++++|.-...+|.....+++|+.|+++
T Consensus 488 ~~~~---------~~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 555 (968)
T PLN00113 488 SGAV---------PRKLGSLSELMQLKLSENKLSGEIPDE-LS--SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLS 555 (968)
T ss_pred CCcc---------ChhhhhhhccCEEECcCCcceeeCChH-Hc--CccCCCEEECCCCcccccCChhHhCcccCCEEECC
Confidence 3333 445677899999999998654455543 22 36899999999988777889888899999999887
Q ss_pred hhhhh
Q 002037 953 SAWFE 957 (977)
Q Consensus 953 ~~~~~ 957 (977)
.....
T Consensus 556 ~N~l~ 560 (968)
T PLN00113 556 QNQLS 560 (968)
T ss_pred CCccc
Confidence 55443
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.86 E-value=2.1e-20 Score=235.68 Aligned_cols=343 Identities=19% Similarity=0.302 Sum_probs=245.9
Q ss_pred ccCccEEEeccCCCc-------cCCCC-CCC-CCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCC
Q 002037 419 LQNCEKLSLMDGNVT-------ALPDQ-PKC-PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLE 489 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~-------~l~~~-~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~ 489 (977)
+.+++.|.+..+... .+|.. ..+ ++||.|.+.++++..+|..+ .+.+|+.|+++++.+..+|..+..++
T Consensus 557 m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L~~L~L~~s~l~~L~~~~~~l~ 634 (1153)
T PLN03210 557 MRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENLVKLQMQGSKLEKLWDGVHSLT 634 (1153)
T ss_pred CccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCCcEEECcCccccccccccccCC
Confidence 677888777544221 23332 222 56999999999999998765 57899999999999999999999999
Q ss_pred CCCeEecCCCC-CCCCccccCCCCccEEEccCC-CCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEcc
Q 002037 490 KLRSLHLENTH-LNDASLIREFGELEVLILKGS-RIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVG 567 (977)
Q Consensus 490 ~L~~L~L~~~~-l~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~ 567 (977)
+|++|+|++|. +..++.++.+++|++|++++| .+..+|..++++++|++|++++|..+..+|.+ + ++++|++|+++
T Consensus 635 ~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Ls 712 (1153)
T PLN03210 635 GLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLS 712 (1153)
T ss_pred CCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCC
Confidence 99999999876 555667899999999999997 68899999999999999999999889999986 3 89999999999
Q ss_pred CCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchh
Q 002037 568 NSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNS 647 (977)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~ 647 (977)
+|...... .. ..++|+.|+++.+....++... .+++|+.|.+..+... .+.+....
T Consensus 713 gc~~L~~~-----------p~--~~~nL~~L~L~~n~i~~lP~~~--~l~~L~~L~l~~~~~~---------~l~~~~~~ 768 (1153)
T PLN03210 713 GCSRLKSF-----------PD--ISTNISWLDLDETAIEEFPSNL--RLENLDELILCEMKSE---------KLWERVQP 768 (1153)
T ss_pred CCCCcccc-----------cc--ccCCcCeeecCCCccccccccc--cccccccccccccchh---------hccccccc
Confidence 87432111 11 1357889999888776665543 3677777776543110 00000000
Q ss_pred hHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeecc
Q 002037 648 IASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLE 727 (977)
Q Consensus 648 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~ 727 (977)
.+.......++|+.|.+.++..+..++. ...++++|+.|++++|.....+|... ++++|+.|++++|..+..++..
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~- 844 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPDI- 844 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCcccccccc-
Confidence 1111222346788888888776666543 24568888888888885444455443 6788888888888776554331
Q ss_pred ccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccccccee
Q 002037 728 DIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIV 807 (977)
Q Consensus 728 ~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~ 807 (977)
.++|+.|+|.++ .++.++ .....+++|+.|++.+|++|..++.. ...+++|+.|++++|..+..+.
T Consensus 845 --------~~nL~~L~Ls~n-~i~~iP---~si~~l~~L~~L~L~~C~~L~~l~~~--~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 845 --------STNISDLNLSRT-GIEEVP---WWIEKFSNLSFLDMNGCNNLQRVSLN--ISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred --------ccccCEeECCCC-CCccCh---HHHhcCCCCCEEECCCCCCcCccCcc--cccccCCCeeecCCCccccccc
Confidence 457888888775 444432 33456888888888888888887442 4577888888888888887653
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=3e-21 Score=204.65 Aligned_cols=193 Identities=18% Similarity=0.208 Sum_probs=143.4
Q ss_pred CccEEEeccCCCccCCC----CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEec
Q 002037 421 NCEKLSLMDGNVTALPD----QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 496 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 496 (977)
+.+-++.++..++.+.. ..-.+..++|++++|.+..+...+|.++++|+.+++.+|.++.+|.......||+.|+|
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDL 132 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEee
Confidence 34455555555554321 12235677899999999999999999999999999999999999998888899999999
Q ss_pred CCCCCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCc
Q 002037 497 ENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 573 (977)
Q Consensus 497 ~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 573 (977)
.+|.|.. .+.+.-++.|++|||+.|.|+++|.. +..-.++++|+|++|.++. +-.+.+..+.+|-+|.++.+..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNri-- 209 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRI-- 209 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcc--
Confidence 9999988 57788899999999999999999865 6666799999999998655 4444478888888888877642
Q ss_pred cccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEE
Q 002037 574 EVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRV 624 (977)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 624 (977)
+......+++|++|+.|++..|..+....-.++++++|+.|.+
T Consensus 210 --------ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 210 --------TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred --------cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhh
Confidence 1222345666777777777766655444434444444444443
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.82 E-value=7.5e-21 Score=201.65 Aligned_cols=321 Identities=19% Similarity=0.247 Sum_probs=181.1
Q ss_pred ccCccEEEeccCCCccCCCCCC-CCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEec
Q 002037 419 LQNCEKLSLMDGNVTALPDQPK-CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHL 496 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L 496 (977)
+++++.+++..|.++.+|.+.. ..+|..|+|.+|.+..+....+..+..||+||||.|.++.+|. ++..-.++++|+|
T Consensus 101 l~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~L 180 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNL 180 (873)
T ss_pred CCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEee
Confidence 4555555666666666655543 2346666666666666555555556666666666666665554 4444455666666
Q ss_pred CCCCCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCc
Q 002037 497 ENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 573 (977)
Q Consensus 497 ~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 573 (977)
++|.|+. ...+..|.+|-+|.|+.|+++.+|.. +.+|++|+.|+|..|++ ..+-.-.+..|++|+.|.+..+....
T Consensus 181 a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i-rive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 181 ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce-eeehhhhhcCchhhhhhhhhhcCccc
Confidence 6666555 34555555666666666666666543 44466666666666542 22211114555555555554432110
Q ss_pred cccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHH
Q 002037 574 EVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVK 653 (977)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 653 (977)
..-..+-.+.++++|++..|.........+-+++.|+.|+++.|.
T Consensus 260 ----------L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na------------------------- 304 (873)
T KOG4194|consen 260 ----------LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA------------------------- 304 (873)
T ss_pred ----------ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhh-------------------------
Confidence 001123344555555555555544444444445555555444331
Q ss_pred HHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceee--ecccccc
Q 002037 654 LLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVF--CLEDIEG 731 (977)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~--~~~~~~~ 731 (977)
+..+..-.-...+.|+.|+|++|.++... .+.+..+..|++|.++++. +..+. .+.
T Consensus 305 ----------------I~rih~d~WsftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~---- 362 (873)
T KOG4194|consen 305 ----------------IQRIHIDSWSFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAFV---- 362 (873)
T ss_pred ----------------hheeecchhhhcccceeEeccccccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHHH----
Confidence 11111111123678888888888766653 3446677888888887762 22221 222
Q ss_pred ccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccc
Q 002037 732 EQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDL 802 (977)
Q Consensus 732 ~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 802 (977)
.+.+|++|+|+++.---.+-++...+..+++|++|.+.+ ++++.++. ..+.++++||.|++.+...
T Consensus 363 ---~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 363 ---GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred ---HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCCcc
Confidence 278888888888642122223444556789999999988 78888844 4457889999999987653
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=1.4e-21 Score=218.53 Aligned_cols=468 Identities=22% Similarity=0.248 Sum_probs=262.2
Q ss_pred EEeccCCCccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC
Q 002037 425 LSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND 503 (977)
Q Consensus 425 l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~ 503 (977)
++.+++.++.+|.. .....+..|++..|.+...|..+..+.-+|++||+++|.+...|..+..+.+|+.|+++.|.+..
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~ 82 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRS 82 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhh
Confidence 44556666666653 23334888888888888878788888778999999999999999999999999999999999888
Q ss_pred -CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccc---
Q 002037 504 -ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETA--- 579 (977)
Q Consensus 504 -~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~--- 579 (977)
|.+++++.+|++|+|.+|.+..+|.++..+++|++|++++|.+ ..+|.- +..++.+..+..+++..........
T Consensus 83 vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f-~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~ 160 (1081)
T KOG0618|consen 83 VPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHF-GPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKK 160 (1081)
T ss_pred CchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhcc-CCCchh-HHhhhHHHHHhhhcchhhhhhccccchh
Confidence 8899999999999999999999999999999999999999984 557765 7888888888877762111000000
Q ss_pred ------cCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHH
Q 002037 580 ------NGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVK 653 (977)
Q Consensus 580 ------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 653 (977)
........++..+++ .|++..+...... +..+.+|+.+....+. ...+...
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d---ls~~~~l~~l~c~rn~-------ls~l~~~----------- 217 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD---LSNLANLEVLHCERNQ-------LSELEIS----------- 217 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhhhhh---hhhccchhhhhhhhcc-------cceEEec-----------
Confidence 000111111222222 2333333322111 0111222221111110 0000000
Q ss_pred HHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeecccccccc
Q 002037 654 LLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQ 733 (977)
Q Consensus 654 ~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~ 733 (977)
-++++.|....+.-.... ....-.+|+.++++.+.+...+ .+...+.+|+.+.+.+..- ..++ ...
T Consensus 218 --g~~l~~L~a~~n~l~~~~---~~p~p~nl~~~dis~n~l~~lp--~wi~~~~nle~l~~n~N~l-~~lp------~ri 283 (1081)
T KOG0618|consen 218 --GPSLTALYADHNPLTTLD---VHPVPLNLQYLDISHNNLSNLP--EWIGACANLEALNANHNRL-VALP------LRI 283 (1081)
T ss_pred --CcchheeeeccCcceeec---cccccccceeeecchhhhhcch--HHHHhcccceEecccchhH-HhhH------HHH
Confidence 123333433332221110 1111346666666666555543 5566666666666655422 1111 001
Q ss_pred ccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhh
Q 002037 734 AGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAE 813 (977)
Q Consensus 734 ~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~ 813 (977)
....+|+.|.+..| .++.+. .....+.+|++|++.. ++|.+++...+.--...|+.|+.+. ..+...+..++..
T Consensus 284 ~~~~~L~~l~~~~n-el~yip---~~le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 284 SRITSLVSLSAAYN-ELEYIP---PFLEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENN 357 (1081)
T ss_pred hhhhhHHHHHhhhh-hhhhCC---Ccccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhh-ccccccccccchh
Confidence 12445555555544 233321 1122366777777776 5666664322211112244444432 2333333222110
Q ss_pred --hhhccccc-cccCC--CCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccc
Q 002037 814 --VEQGAAQE-RNVSS--APQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAEN 888 (977)
Q Consensus 814 --~~~~~~~~-~~l~~--l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~ 888 (977)
..+...+. ..+.+ +|...++.+||.|+++. +.|..+ |...+.++..|++|++++.. ++.+ +..
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~f-pas~~~kle~LeeL~LSGNk-L~~L---------p~t 425 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSF-PASKLRKLEELEELNLSGNK-LTTL---------PDT 425 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccC-CHHHHhchHHhHHHhcccch-hhhh---------hHH
Confidence 00000001 11222 24557899999999998 455553 66778999999999999863 4444 334
Q ss_pred cccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCC--CCCCCCCCccccccccchhhh
Q 002037 889 KNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMK--LPLDTRSAPKLETFKAHSAWF 956 (977)
Q Consensus 889 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~--lp~~~~~~~~L~~l~~~~~~~ 956 (977)
...++.|++|...+ ..|.++|. +. .++.|+.+|+ .|.+|.. +|+...+ |+|+.|+.+.+-|
T Consensus 426 va~~~~L~tL~ahs-N~l~~fPe--~~--~l~qL~~lDl-S~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 426 VANLGRLHTLRAHS-NQLLSFPE--LA--QLPQLKVLDL-SCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhhhhHHHhhcC-Cceeechh--hh--hcCcceEEec-ccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 45566666666555 44555552 11 2466666666 3666655 3333322 5666666655544
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=5.1e-21 Score=203.83 Aligned_cols=147 Identities=20% Similarity=0.370 Sum_probs=75.6
Q ss_pred CccEEEeccCCCc--cCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 421 NCEKLSLMDGNVT--ALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 421 ~~~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
-+|.+++++|.+. .+|.. ..+..++.|.+....+..+|... +.+.+|.+|.++.|++..+-..++.|+.||.+.++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 3444455544443 13322 23445555555555555544432 45555555555555555554455555555555555
Q ss_pred CCCCCC---CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 498 NTHLND---ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 498 ~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
.|+++. |..|.++..|.+|||++|++++.|..+.+.+++-.|+|++|+ +..+|..++-+|+.|-.|+++++
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccc
Confidence 555443 455555555555555555555555555555555555555554 34455555555555555555544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.78 E-value=2.7e-22 Score=203.48 Aligned_cols=470 Identities=20% Similarity=0.212 Sum_probs=232.4
Q ss_pred cEEEeccCCCccCC-CCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALP-DQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l 501 (977)
..+.++.|.+..+. +..++..+.+|.+.+|.+..+|+.. +.+..+..|+.+.+++..+|+.++.+..|+.|+.+++.+
T Consensus 48 ~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 48 QKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 34455555555443 3356666777777777766666544 566667777777777777777777777777777777766
Q ss_pred CC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccccc
Q 002037 502 ND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETAN 580 (977)
Q Consensus 502 ~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 580 (977)
.. +++++.+..|+.|+..+|++..+|.+++++.+|..|++.+|. ...+|+..+. ++.|++|+...+.
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~---------- 194 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNL---------- 194 (565)
T ss_pred eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhh----------
Confidence 66 667777777777777777777777777777777777777765 4445555333 6777777654432
Q ss_pred CcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccc
Q 002037 581 GQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTE 660 (977)
Q Consensus 581 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~ 660 (977)
-.....+++.+.+|..|++..+.....| .+.+++.|+.|.+..+.. ...|..+..-++++.
T Consensus 195 -L~tlP~~lg~l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i----------------~~lpae~~~~L~~l~ 255 (565)
T KOG0472|consen 195 -LETLPPELGGLESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQI----------------EMLPAEHLKHLNSLL 255 (565)
T ss_pred -hhcCChhhcchhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHH----------------HhhHHHHhcccccce
Confidence 2233456666666666666666665555 234455555555433210 112333333344455
Q ss_pred eeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccc-ccccccccc
Q 002037 661 YLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIE-GEQAGLKRL 739 (977)
Q Consensus 661 ~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~~~L 739 (977)
.|++.. .+++..|. ...-+.+|..|++++|.++..++. ++++ .|+.|.+.+.+-- .+.. +-+. +....+.-|
T Consensus 256 vLDLRd-Nklke~Pd-e~clLrsL~rLDlSNN~is~Lp~s--Lgnl-hL~~L~leGNPlr-TiRr-~ii~~gT~~vLKyL 328 (565)
T KOG0472|consen 256 VLDLRD-NKLKEVPD-EICLLRSLERLDLSNNDISSLPYS--LGNL-HLKFLALEGNPLR-TIRR-EIISKGTQEVLKYL 328 (565)
T ss_pred eeeccc-cccccCch-HHHHhhhhhhhcccCCccccCCcc--cccc-eeeehhhcCCchH-HHHH-HHHcccHHHHHHHH
Confidence 555543 22222221 112355666777777766655443 5555 5666666665311 0000 0000 000011111
Q ss_pred ceeeccCccCcceeee-----------cccccccccccceEEEeecCCcccccchhHHh-hcCCCceEEeccccccccee
Q 002037 740 RELVLVGLPKVLTIWK-----------GNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAE-GLGNLEDLSILKCDLMEEIV 807 (977)
Q Consensus 740 ~~L~L~~~~~L~~i~~-----------~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~-~l~~L~~L~l~~c~~l~~i~ 807 (977)
+.= ..+..++.--. .......+.+.+.|++++ .+++.+|...+-. .-.-....++++. .+.++|
T Consensus 329 rs~--~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskN-qL~elP 404 (565)
T KOG0472|consen 329 RSK--IKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKN-QLCELP 404 (565)
T ss_pred HHh--hccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcceEEEecccc-hHhhhh
Confidence 110 00011110000 001112345566777766 5566553222111 1112333444432 122232
Q ss_pred ccchh--hhhhccccccccCCCC--CCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeeccccc
Q 002037 808 SVDEA--EVEQGAAQERNVSSAP--QPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEE 883 (977)
Q Consensus 808 ~~~~~--~~~~~~~~~~~l~~l~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~ 883 (977)
..-.. +.....-+.....++. ....+++|..|++++. -+.+++. -++.+..|+.|+|+.. ....+
T Consensus 405 k~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~--e~~~lv~Lq~LnlS~N-rFr~l------- 473 (565)
T KOG0472|consen 405 KRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPE--EMGSLVRLQTLNLSFN-RFRML------- 473 (565)
T ss_pred hhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcch--hhhhhhhhheeccccc-ccccc-------
Confidence 21110 0000000011111221 1245899999999884 3555532 3677888999999965 22222
Q ss_pred ccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCCCCCCccccccccc
Q 002037 884 KAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFKAH 952 (977)
Q Consensus 884 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~~~ 952 (977)
|.....+..|+.+-.+ -..+.+++..++. .+.+|..|++.+ ..+..+|..++++++|+.+++.
T Consensus 474 --P~~~y~lq~lEtllas-~nqi~~vd~~~l~--nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~ 536 (565)
T KOG0472|consen 474 --PECLYELQTLETLLAS-NNQIGSVDPSGLK--NMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLELD 536 (565)
T ss_pred --hHHHhhHHHHHHHHhc-cccccccChHHhh--hhhhcceeccCC-CchhhCChhhccccceeEEEec
Confidence 1111122222222222 2445555443222 245555565543 4556666666666666666543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=9.9e-21 Score=201.68 Aligned_cols=172 Identities=23% Similarity=0.369 Sum_probs=136.6
Q ss_pred ccCccEEEeccCCCccCCC-CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC--CCCCCcccCCCCCeEe
Q 002037 419 LQNCEKLSLMDGNVTALPD-QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS--SLAPSLPCLEKLRSLH 495 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~~~~l~~L~~L~ 495 (977)
+..+++|.+....+..+|. ...+.+|..|.+.+|.+..+... ++.++.||.+++..|++. .+|+.|..+..|..||
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGE-Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGE-LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhh-hccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 6778888888888877776 35788888888998887766544 467889999999998875 7899999999999999
Q ss_pred cCCCCCCC-CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCc
Q 002037 496 LENTHLND-ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDW 573 (977)
Q Consensus 496 L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~ 573 (977)
|++|.+.. |..+..-+++-+|+|++|+|..+|.. +-+|..|-+|||++|+ +..+|+. +.+|.+|++|.++++-.
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL-- 185 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPL-- 185 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChh--
Confidence 99999888 88899999999999999999999987 5688899999999987 7888988 89999999999988631
Q ss_pred cccccccCcCccccccccCCCCcEEEeeec
Q 002037 574 EVEETANGQNARFSEVASLTRLTVLYIHVS 603 (977)
Q Consensus 574 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 603 (977)
....+..+..++.|+.|.++..
T Consensus 186 --------~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 186 --------NHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred --------hHHHHhcCccchhhhhhhcccc
Confidence 1122334445555666655543
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.65 E-value=6.3e-18 Score=189.71 Aligned_cols=398 Identities=22% Similarity=0.304 Sum_probs=207.6
Q ss_pred ccEEEeccCCCccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCC
Q 002037 422 CEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 500 (977)
+.+|++++|.+..+|.. ..+.+|+.|.++.|.+...|. ...++++|++|.|.+|.+..+|.++..+++|++|++++|.
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~-s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPS-SCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCch-hhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 55566666655555543 345566666666666555553 2355666666666666666666666666666666666666
Q ss_pred CCC-CccccCCCCccEEEccCC-CCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 501 LND-ASLIREFGELEVLILKGS-RIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 501 l~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
+.. |..+..+..+..++.++| .+..++. .. .+++++..+.+...++.+ +..++. .|+++.+...
T Consensus 126 f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~----~~-ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~------ 191 (1081)
T KOG0618|consen 126 FGPIPLVIEVLTAEEELAASNNEKIQRLGQ----TS-IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME------ 191 (1081)
T ss_pred cCCCchhHHhhhHHHHHhhhcchhhhhhcc----cc-chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh------
Confidence 555 555555555555555555 2222222 11 455555555544555444 444444 4555543211
Q ss_pred ccCcCccccccccCCCCcEEEeeecCccccc------------------cCCCCCCCCcceEEEEecCcccCCCCcceee
Q 002037 579 ANGQNARFSEVASLTRLTVLYIHVSNTKVLS------------------VDFDGPWTNLKRFRVCVNDDYWEIAPKRSMH 640 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~------------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 640 (977)
...+..+.+|+.+....+....+. .+......+|++++++.+.
T Consensus 192 -------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~------------ 252 (1081)
T KOG0618|consen 192 -------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN------------ 252 (1081)
T ss_pred -------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh------------
Confidence 122333333333333222211110 0011112344555444331
Q ss_pred ecccchhhHHHHHHHHhccceeEecCCC----------------------CcccccccccCCCCCccEEeeccccccccc
Q 002037 641 LKNLSNSIASWVKLLLEKTEYLTLTRSS----------------------NLQDIGEIDVQGFTGLMCMHLRACSMQRIF 698 (977)
Q Consensus 641 l~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~ 698 (977)
-...|+|+... .+|+.+...... .+..++. ...++..|++|+|..|.+...+
T Consensus 253 ----l~~lp~wi~~~-~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~-~le~~~sL~tLdL~~N~L~~lp 326 (1081)
T KOG0618|consen 253 ----LSNLPEWIGAC-ANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPP-FLEGLKSLRTLDLQSNNLPSLP 326 (1081)
T ss_pred ----hhcchHHHHhc-ccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCC-cccccceeeeeeehhccccccc
Confidence 12346666553 555555543211 1111111 1123556666666666444332
Q ss_pred cCCccccccc-ceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCc
Q 002037 699 HSNFYPTVQI-LEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKL 777 (977)
Q Consensus 699 ~~~~~~~l~~-L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L 777 (977)
+ .++..+.. |..|+.+.. .+...+..+ +..++.|+.|.+.++. |++- ......++++|+.|++++ +.|
T Consensus 327 ~-~~l~v~~~~l~~ln~s~n-~l~~lp~~~-----e~~~~~Lq~LylanN~-Ltd~--c~p~l~~~~hLKVLhLsy-NrL 395 (1081)
T KOG0618|consen 327 D-NFLAVLNASLNTLNVSSN-KLSTLPSYE-----ENNHAALQELYLANNH-LTDS--CFPVLVNFKHLKVLHLSY-NRL 395 (1081)
T ss_pred h-HHHhhhhHHHHHHhhhhc-ccccccccc-----chhhHHHHHHHHhcCc-cccc--chhhhccccceeeeeecc-ccc
Confidence 2 22222222 333333222 122222211 2347788888888763 3331 223445789999999998 777
Q ss_pred ccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceeccccccc
Q 002037 778 RYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAH 857 (977)
Q Consensus 778 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 857 (977)
.++ |.....++..|+.|++++. +|+.++.... .++.|+.|...+ +.+.. +| -+.
T Consensus 396 ~~f-pas~~~kle~LeeL~LSGN-kL~~Lp~tva--------------------~~~~L~tL~ahs-N~l~~-fP--e~~ 449 (1081)
T KOG0618|consen 396 NSF-PASKLRKLEELEELNLSGN-KLTTLPDTVA--------------------NLGRLHTLRAHS-NQLLS-FP--ELA 449 (1081)
T ss_pred ccC-CHHHHhchHHhHHHhcccc-hhhhhhHHHH--------------------hhhhhHHHhhcC-Cceee-ch--hhh
Confidence 775 5667788999999999985 4555543211 367777776554 23333 33 356
Q ss_pred ccccccEEEEecccccceeeecccccccccccccc-cccceeeccccccc
Q 002037 858 NLKQLEELTVASCNHMERIITVSDEEKAAENKNVL-PKLKILALEDLPEL 906 (977)
Q Consensus 858 ~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L 906 (977)
.+++|+.++++ |.++..+... . ... |.|++|+++|.+.+
T Consensus 450 ~l~qL~~lDlS-~N~L~~~~l~-------~--~~p~p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 450 QLPQLKVLDLS-CNNLSEVTLP-------E--ALPSPNLKYLDLSGNTRL 489 (1081)
T ss_pred hcCcceEEecc-cchhhhhhhh-------h--hCCCcccceeeccCCccc
Confidence 78999999986 6666655221 1 122 89999999998764
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=2.8e-18 Score=174.60 Aligned_cols=351 Identities=18% Similarity=0.234 Sum_probs=200.0
Q ss_pred cCccEEEeccCCCccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCC
Q 002037 420 QNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 498 (977)
..+..+...+|++..+|.. ..+.++..+++.+|.+..+++..+. ++.|+.||...|-+..+|+.++.+..|..|+|+.
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~ 215 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRR 215 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhh
Confidence 3444555666777776654 5677788888888888888877765 8888888888888888888888888888888888
Q ss_pred CCCCCCccccCCCCccEEEccCCCCcccCcccc-CCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccc
Q 002037 499 THLNDASLIREFGELEVLILKGSRIVELPNGIG-TVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEE 577 (977)
Q Consensus 499 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 577 (977)
|.+...+.+..+..|..|.++.|.|+.+|..++ ++.+|.+||++.|+ +++.|.+ +..|.+|.+|+++++..
T Consensus 216 Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde-~clLrsL~rLDlSNN~i------ 287 (565)
T KOG0472|consen 216 NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDE-ICLLRSLERLDLSNNDI------ 287 (565)
T ss_pred cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchH-HHHhhhhhhhcccCCcc------
Confidence 887775577777777777777777777776655 67777777777775 5667766 66677777777766521
Q ss_pred cccCcCccccccccCCCCcEEEeeecCccccccCCCCCCC--CcceEEE---Eec------C-------cccCC------
Q 002037 578 TANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWT--NLKRFRV---CVN------D-------DYWEI------ 633 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l---~~~------~-------~~~~~------ 633 (977)
....-+++++ +|+.|-+.++..+.+..++.++-+ -|++|.- +.+ . ..|..
T Consensus 288 -----s~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 288 -----SSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred -----ccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 1222345555 566666655543322222111100 0111110 000 0 00000
Q ss_pred CCcceeeecccc-hhhHHHHHH--------------------------HHhccceeEecCCCCcccccccccCCCCCccE
Q 002037 634 APKRSMHLKNLS-NSIASWVKL--------------------------LLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMC 686 (977)
Q Consensus 634 ~~~~~l~l~~~~-~~~~~~~~~--------------------------~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~ 686 (977)
-..+.+.+.... ...|+.+.+ ...-.+.+.++. +..++.......+++|..
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsn--n~isfv~~~l~~l~kLt~ 439 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSN--NKISFVPLELSQLQKLTF 439 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhc--CccccchHHHHhhhccee
Confidence 001111111111 112222222 111122222211 111222233456888999
Q ss_pred EeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeeccccccccccc
Q 002037 687 MHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTL 766 (977)
Q Consensus 687 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L 766 (977)
|++++|.+.+. |.. ++.+..|+.|+++.. ....++..-- ....|+. .+.+...+..+. +.....|.+|
T Consensus 440 L~L~NN~Ln~L-P~e-~~~lv~Lq~LnlS~N-rFr~lP~~~y------~lq~lEt-llas~nqi~~vd--~~~l~nm~nL 507 (565)
T KOG0472|consen 440 LDLSNNLLNDL-PEE-MGSLVRLQTLNLSFN-RFRMLPECLY------ELQTLET-LLASNNQIGSVD--PSGLKNMRNL 507 (565)
T ss_pred eecccchhhhc-chh-hhhhhhhheeccccc-ccccchHHHh------hHHHHHH-HHhccccccccC--hHHhhhhhhc
Confidence 99988844443 333 445566888888876 2222221100 0222222 233323344331 1234688999
Q ss_pred ceEEEeecCCcccccchhHHhhcCCCceEEeccccc
Q 002037 767 KLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDL 802 (977)
Q Consensus 767 ~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 802 (977)
.+|++.+ +.+..+| ..++++++|++|.+++.+.
T Consensus 508 ~tLDL~n-Ndlq~IP--p~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 508 TTLDLQN-NDLQQIP--PILGNMTNLRHLELDGNPF 540 (565)
T ss_pred ceeccCC-CchhhCC--hhhccccceeEEEecCCcc
Confidence 9999988 7888874 4578999999999998764
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.55 E-value=1e-16 Score=144.30 Aligned_cols=167 Identities=28% Similarity=0.393 Sum_probs=127.4
Q ss_pred CccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCC
Q 002037 432 VTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREF 510 (977)
Q Consensus 432 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l 510 (977)
+.+++...++.+++.|.+++|.++.+|+.. ..+++|.+|++++|++..+|.+++.++.||.|+++-|.+.. |..++.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~ 101 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSF 101 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCC
Confidence 344555566777777888888877777664 67888888888888888888888888888888888888776 7888888
Q ss_pred CCccEEEccCCCCc--ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccc
Q 002037 511 GELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSE 588 (977)
Q Consensus 511 ~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 588 (977)
+-|++||+.+|++. .+|..+..+..|+.|++++|. .+.+|+. +++|++||.|.+..+. -.....+
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdnd-----------ll~lpke 168 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDND-----------LLSLPKE 168 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCc-----------hhhCcHH
Confidence 88888888888766 678888888888888888876 5677777 7888888888776642 2234467
Q ss_pred cccCCCCcEEEeeecCccccccCC
Q 002037 589 VASLTRLTVLYIHVSNTKVLSVDF 612 (977)
Q Consensus 589 l~~l~~L~~L~l~~~~~~~~~~~~ 612 (977)
++.++.|+.|++.++....++++.
T Consensus 169 ig~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHHhcccceeeecChhh
Confidence 788888888888887776666543
No 16
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=8.4e-15 Score=132.03 Aligned_cols=149 Identities=24% Similarity=0.410 Sum_probs=134.8
Q ss_pred ccCccEEEeccCCCccCCC-CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 419 LQNCEKLSLMDGNVTALPD-QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
+.++++|.++.|.+..+|. ...+.+|.+|++++|.+..+|... +.++.||.|+++-|.+..+|..|+.++.|+.|||.
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 6778899999999888765 468899999999999999988764 88999999999999999999999999999999999
Q ss_pred CCCCCC---CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 498 NTHLND---ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 498 ~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
+|++.. |..+..+..|+.|.+++|.+.-+|..++++++|+.|.++.|. +-++|.+ ++.|+.|++|++.++.
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNR 184 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccce
Confidence 999876 777888889999999999999999999999999999999997 5568998 8999999999998874
No 17
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.38 E-value=4.5e-11 Score=150.85 Aligned_cols=289 Identities=11% Similarity=0.121 Sum_probs=177.2
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCC-CCCHHHHHHHHHHHhhhcc
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTEL 150 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~ 150 (977)
+.+-|...++.+- . ....+++.|+|++|.||||++.++.... +.++|+++.. +.+...+...++..++...
T Consensus 15 ~~~~R~rl~~~l~----~-~~~~~~~~v~apaG~GKTtl~~~~~~~~---~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~ 86 (903)
T PRK04841 15 NTVVRERLLAKLS----G-ANNYRLVLVTSPAGYGKTTLISQWAAGK---NNLGWYSLDESDNQPERFASYLIAALQQAT 86 (903)
T ss_pred ccCcchHHHHHHh----c-ccCCCeEEEECCCCCCHHHHHHHHHHhC---CCeEEEecCcccCCHHHHHHHHHHHHHHhc
Confidence 4556665555443 2 2237899999999999999999988653 2699999974 4466667677777664221
Q ss_pred cc--------------chHHHHHHHHHHHHHc-cceEEEEecCcccccc--ccccccCC-CCCCCCeEEEEecCChHH--
Q 002037 151 EG--------------DVEVLRAAFLSERLKR-QKRVLIILDDLWGKLD--LAVVGIPY-GEEHKGCKIILTSRFKEV-- 210 (977)
Q Consensus 151 ~~--------------~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~--~~~l~~~~-~~~~~gs~iivTtR~~~v-- 210 (977)
.. .........+...+.. +.+++|||||+....+ ...+...+ .....+.++|||||...-
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~ 166 (903)
T PRK04841 87 NGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLG 166 (903)
T ss_pred CcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCc
Confidence 11 0111122233333332 6899999999976521 11122222 223456788899998421
Q ss_pred -HhhccCCceEEcc----CCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHH
Q 002037 211 -CDEMESTNYVQVE----ELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIK 285 (977)
Q Consensus 211 -~~~~~~~~~~~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~ 285 (977)
..........++. +|+.+|+.++|....+.. -..+.+.+|++.++|.|+++..++..+...... ......
T Consensus 167 ~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~ 241 (903)
T PRK04841 167 IANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP----IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSAR 241 (903)
T ss_pred hHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhH
Confidence 1111112345555 999999999998876522 234557889999999999999988777533210 011111
Q ss_pred HHhhCCCCCCCCchHHHHHHHHH-hhccchhhHHHHHhhhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHH
Q 002037 286 RKKASTPINVEGIPEEVVLCVAL-GYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPV 364 (977)
Q Consensus 286 ~l~~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~ 364 (977)
.+... ....+...+.- -|+.||++.+..+...|+++. ++.+.+-. +.. .+ .....
T Consensus 242 ~~~~~-------~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~---~~~~l~~~------l~~----~~----~~~~~ 297 (903)
T PRK04841 242 RLAGI-------NASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS---MNDALIVR------VTG----EE----NGQMR 297 (903)
T ss_pred hhcCC-------CchhHHHHHHHHHHhcCCHHHHHHHHHhccccc---CCHHHHHH------HcC----CC----cHHHH
Confidence 11000 01334444433 378999999999999999973 44332221 111 11 12346
Q ss_pred HHHHHhcccccC-CC-CcccccchhhHHHHHHHHH
Q 002037 365 VLRLISSSLLLE-GD-RESCFRIHDDTRKVVKYIA 397 (977)
Q Consensus 365 l~~L~~~~li~~-~~-~~~~~~mHdlv~~~a~~i~ 397 (977)
+++|.+.+++.. .+ ...+|++|++++++++...
T Consensus 298 L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 298 LEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred HHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 889999999753 22 3457899999999998765
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=2.7e-11 Score=141.86 Aligned_cols=130 Identities=25% Similarity=0.328 Sum_probs=84.6
Q ss_pred ccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCC
Q 002037 422 CEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l 501 (977)
-..|+++.+.+..+|... .++|+.|.+.+|.++.+|. .+++|++|++++|.++.+|.. .++|+.|++++|.+
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL 274 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCCch
Confidence 345677777777776532 2467788888887777664 246788888888887777653 35677788888776
Q ss_pred CCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 502 NDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 502 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
...+. .+.+|+.|++++|+++.+|.. +++|+.|++++|.+ ..+|.. ..+|+.|++++|
T Consensus 275 ~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l----p~~L~~L~Ls~N 332 (788)
T PRK15387 275 THLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL----PSELCKLWAYNN 332 (788)
T ss_pred hhhhh--chhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC----cccccccccccC
Confidence 65221 235677778888888777752 45778888888764 345542 234556666554
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.30 E-value=1.4e-12 Score=156.22 Aligned_cols=101 Identities=29% Similarity=0.462 Sum_probs=73.0
Q ss_pred CCccEEEccCCcCCCCCCCcccCCCCCeEecCCCC--CCCC--ccccCCCCccEEEccCC-CCcccCccccCCCCCCEEE
Q 002037 466 REIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH--LNDA--SLIREFGELEVLILKGS-RIVELPNGIGTVSNLKLLD 540 (977)
Q Consensus 466 ~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~--l~~~--~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~ 540 (977)
...|...+-++.+..++.+.. ++.|++|-+.++. +... ..+..++.|++|||++| .+.+||.+|+.|.+||+|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 344555555555544444332 2256666666664 3332 33667888888888876 6889999999999999999
Q ss_pred cCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 541 LSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 541 l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
++++. ...+|.+ +++|+.|.+|++..+
T Consensus 602 L~~t~-I~~LP~~-l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 602 LSDTG-ISHLPSG-LGNLKKLIYLNLEVT 628 (889)
T ss_pred ccCCC-ccccchH-HHHHHhhheeccccc
Confidence 99998 5689999 999999999998764
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=5.6e-11 Score=139.29 Aligned_cols=181 Identities=23% Similarity=0.203 Sum_probs=123.9
Q ss_pred cCCCCCcccccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCC
Q 002037 410 MKKGWPREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLE 489 (977)
Q Consensus 410 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~ 489 (977)
....+|..-..+++.|.+.+|+++.+|.. .++|++|++++|.++.+|. ..++|+.|++++|.+..+|... .
T Consensus 212 ~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~ 282 (788)
T PRK15387 212 GLTTLPDCLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPALP---S 282 (788)
T ss_pred CCCcCCcchhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccC----cccccceeeccCCchhhhhhch---h
Confidence 33445543345788999999999888864 5889999999999888874 2468899999999988887643 5
Q ss_pred CCCeEecCCCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 490 KLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 490 ~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
.|+.|++++|.++..+. .+++|+.|++++|+++.+|... .+|+.|++++|.+ ..+|.. ..+|+.|++++|
T Consensus 283 ~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~N~L-~~LP~l----p~~Lq~LdLS~N 352 (788)
T PRK15387 283 GLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYNNQL-TSLPTL----PSGLQELSVSDN 352 (788)
T ss_pred hcCEEECcCCccccccc--cccccceeECCCCccccCCCCc---ccccccccccCcc-cccccc----ccccceEecCCC
Confidence 68889999998887322 3478999999999998887632 3577888888874 456642 257888988876
Q ss_pred cCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEec
Q 002037 570 FGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 627 (977)
.... ++ .+ ..+|+.|+++.+....++. ...+|+.|++..|
T Consensus 353 ~Ls~-LP-----------~l--p~~L~~L~Ls~N~L~~LP~----l~~~L~~LdLs~N 392 (788)
T PRK15387 353 QLAS-LP-----------TL--PSELYKLWAYNNRLTSLPA----LPSGLKELIVSGN 392 (788)
T ss_pred ccCC-CC-----------CC--CcccceehhhccccccCcc----cccccceEEecCC
Confidence 4221 00 00 1355666666665544332 1245666666544
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1.9e-11 Score=144.19 Aligned_cols=177 Identities=22% Similarity=0.325 Sum_probs=117.1
Q ss_pred CccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCC
Q 002037 421 NCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 500 (977)
+...|.+.++.++.+|... .+.++.|++++|.+..+|...+ .+|++|++++|.++.+|..+. .+|+.|+|++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 4456777777777777532 3578888888888888877553 478888888888888887654 378888888888
Q ss_pred CCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccc
Q 002037 501 LND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETA 579 (977)
Q Consensus 501 l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 579 (977)
+.. |..+. .+|++|++++|++..+|..+. .+|++|++++|+ +..+|.. +. ++|+.|++++|.... ++
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-lp--~sL~~L~Ls~N~Lt~-LP--- 320 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-LP--SGITHLNVQSNSLTA-LP--- 320 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-ch--hhHHHHHhcCCcccc-CC---
Confidence 777 44443 478888888888888887654 478888888886 4456654 22 467777776653211 00
Q ss_pred cCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEec
Q 002037 580 NGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 580 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 627 (977)
..+ .++|+.|++..+....++..+ .++|+.|+++.|
T Consensus 321 -------~~l--~~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N 356 (754)
T PRK15370 321 -------ETL--PPGLKTLEAGENALTSLPASL---PPELQVLDVSKN 356 (754)
T ss_pred -------ccc--cccceeccccCCccccCChhh---cCcccEEECCCC
Confidence 011 245677777666555444322 245666655544
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.25 E-value=2.5e-11 Score=143.28 Aligned_cols=187 Identities=22% Similarity=0.311 Sum_probs=141.0
Q ss_pred CCCCCcccccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCC
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEK 490 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~ 490 (977)
...+|..-..+++.|++++|.+..+|... ..+|+.|++++|.+..+|..+. ..|+.|++++|.+..+|..+. .+
T Consensus 190 LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~ 263 (754)
T PRK15370 190 LTTIPACIPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLTSIPATLP---DTIQEMELSINRITELPERLP--SA 263 (754)
T ss_pred cCcCCcccccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccccCChhhh---ccccEEECcCCccCcCChhHh--CC
Confidence 33445433567899999999999888643 4689999999999998887553 479999999999999998765 58
Q ss_pred CCeEecCCCCCCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 491 LRSLHLENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 491 L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
|++|++++|.+.. |..+. .+|++|++++|+++.+|..+. .+|++|++++|.+ ..+|.. + .++|+.|++++|
T Consensus 264 L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~-l--~~sL~~L~Ls~N 335 (754)
T PRK15370 264 LQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL-TALPET-L--PPGLKTLEAGEN 335 (754)
T ss_pred CCEEECcCCccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc-ccCCcc-c--cccceeccccCC
Confidence 9999999999887 55443 589999999999999997654 4799999999974 457764 2 368999998886
Q ss_pred cCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEec
Q 002037 570 FGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 627 (977)
.... + ...+ .++|+.|+++.|....++..+ .++|+.|++..|
T Consensus 336 ~Lt~-L----------P~~l--~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~N 377 (754)
T PRK15370 336 ALTS-L----------PASL--PPELQVLDVSKNQITVLPETL---PPTITTLDVSRN 377 (754)
T ss_pred cccc-C----------Chhh--cCcccEEECCCCCCCcCChhh---cCCcCEEECCCC
Confidence 4211 1 1112 258999999988876555433 356777777655
No 23
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.23 E-value=1.9e-09 Score=114.89 Aligned_cols=177 Identities=19% Similarity=0.208 Sum_probs=113.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCC-EEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHH----HHHHc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFD-KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLS----ERLKR 168 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~----~~l~~ 168 (977)
..++.|+|++|+||||+|+.+++.-.... .++|+ +....+..+++..|+..++..............+. .....
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~ 121 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKL-VNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAA 121 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeee-eCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhC
Confidence 45899999999999999999998822222 22333 33345777888899988876544333333333333 33335
Q ss_pred cceEEEEecCccccc--ccccccc--CC-CCCCCCeEEEEecCChHHHhhcc----------CCceEEccCCCHHHHHHH
Q 002037 169 QKRVLIILDDLWGKL--DLAVVGI--PY-GEEHKGCKIILTSRFKEVCDEME----------STNYVQVEELTDEDRLIL 233 (977)
Q Consensus 169 ~~~~LlvlDdv~~~~--~~~~l~~--~~-~~~~~gs~iivTtR~~~v~~~~~----------~~~~~~l~~L~~~~~~~l 233 (977)
+++.++|+||++... .++.+.. .. ........|++|.... ....+. ....+++++++.+|..++
T Consensus 122 ~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~ 200 (269)
T TIGR03015 122 GKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREY 200 (269)
T ss_pred CCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHH
Confidence 788999999998753 2333321 11 1112233456665433 211111 124678999999999999
Q ss_pred HHHhcCC---CCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 234 FKKKAGL---PEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 234 f~~~~~~---~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
+...+.. .....-.++..+.|++.++|.|..|..++..+
T Consensus 201 l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 201 IEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9876641 11223446789999999999999999998876
No 24
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.19 E-value=9.3e-11 Score=122.37 Aligned_cols=191 Identities=17% Similarity=0.212 Sum_probs=104.5
Q ss_pred ccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhc-CCCCEEEEEEeCCCCCHHHHHHHH---------
Q 002037 73 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQE-IPFDKVIFVRVTQTPDVKRVQDEI--------- 142 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~f~~~~wv~~~~~~~~~~~~~~i--------- 142 (977)
|+||++++++|.+++..+. .+.+.|+|+.|+|||+|++.+.+.. ..-..++|+......... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~~--~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGP--SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES-SLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH-HHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhc--CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh-HHHHHHHHHHHHHH
Confidence 6899999999999998765 6799999999999999999999983 222245555444433222 22222
Q ss_pred -HHHhhhcccc-----------chHHHHHHHHHHHHH-ccceEEEEecCccccc-ccc---c----c---ccCCCCCCCC
Q 002037 143 -ARFLNTELEG-----------DVEVLRAAFLSERLK-RQKRVLIILDDLWGKL-DLA---V----V---GIPYGEEHKG 198 (977)
Q Consensus 143 -~~~l~~~~~~-----------~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-~~~---~----l---~~~~~~~~~g 198 (977)
.+.+...... .........+.+.+. .+++++||+||+.... ... . + ...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 2222211110 111223334444443 3556999999998765 111 1 1 111112 233
Q ss_pred eEEEEecCChHHHhh--------ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 199 CKIILTSRFKEVCDE--------MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 199 s~iivTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
-.+|+++....+... .+....+.+++|+.+++++++...+.....-+..++..++|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 344555544544332 222345999999999999999997643211123456679999999999988764
No 25
>PF05729 NACHT: NACHT domain
Probab=99.14 E-value=2.9e-10 Score=111.46 Aligned_cols=139 Identities=25% Similarity=0.332 Sum_probs=91.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCC-----CCEEEEEEeCCCCCHH---HHHHHHHHHhhhccccchHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDKVIFVRVTQTPDVK---RVQDEIARFLNTELEGDVEVLRAAFLSE 164 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~-----f~~~~wv~~~~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~l~~ 164 (977)
|++.|+|.+|+||||+++.++.. ... +...+|+..+...... .+...|............. ....
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~~~ 75 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE-----LLQE 75 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH-----HHHH
Confidence 58999999999999999999988 222 4567777766544322 3444444433222111111 2333
Q ss_pred HHHccceEEEEecCccccccc---------cccccCCCC--CCCCeEEEEecCChHH---HhhccCCceEEccCCCHHHH
Q 002037 165 RLKRQKRVLIILDDLWGKLDL---------AVVGIPYGE--EHKGCKIILTSRFKEV---CDEMESTNYVQVEELTDEDR 230 (977)
Q Consensus 165 ~l~~~~~~LlvlDdv~~~~~~---------~~l~~~~~~--~~~gs~iivTtR~~~v---~~~~~~~~~~~l~~L~~~~~ 230 (977)
.....+++++|+|++++...- ..+...+.. ..++.+||||+|.... .........+++.+|++++.
T Consensus 76 ~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 76 LLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred HHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 444579999999999876431 112222222 2568999999999876 33344446899999999999
Q ss_pred HHHHHHhc
Q 002037 231 LILFKKKA 238 (977)
Q Consensus 231 ~~lf~~~~ 238 (977)
.+++.++.
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99998875
No 26
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.13 E-value=7.8e-09 Score=116.76 Aligned_cols=285 Identities=18% Similarity=0.105 Sum_probs=166.4
Q ss_pred cccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCC--CCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002037 72 PLKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIP--FDKVIFVRVTQTPDVKRVQDEIARFL 146 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l 146 (977)
.+.||+++++++...+.+. +.....+.|+|++|+|||++++.++++ ... .-.++++++....+...++..|++++
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l 110 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQL 110 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHh
Confidence 4779999999999887442 222456889999999999999999998 332 23567777777778888899999988
Q ss_pred hhc-c--ccchHHHHHHHHHHHHH-ccceEEEEecCccccc------cccccccCCCCCCCCe--EEEEecCChHHHhhc
Q 002037 147 NTE-L--EGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL------DLAVVGIPYGEEHKGC--KIILTSRFKEVCDEM 214 (977)
Q Consensus 147 ~~~-~--~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~------~~~~l~~~~~~~~~gs--~iivTtR~~~v~~~~ 214 (977)
... . .+.+.......+.+.+. .+++.+||||+++... .+..+.... ....++ .||.++....+....
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~-~~~~~~~v~vI~i~~~~~~~~~l 189 (394)
T PRK00411 111 FGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH-EEYPGARIGVIGISSDLTFLYIL 189 (394)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh-hccCCCeEEEEEEECCcchhhhc
Confidence 642 1 12233444555566654 3567899999998743 122221111 111232 356666655442221
Q ss_pred c-------CCceEEccCCCHHHHHHHHHHhcCCC-CCChhhHHHHHHHHHHh----CCChhHHHHHHHHh--c---CC--
Q 002037 215 E-------STNYVQVEELTDEDRLILFKKKAGLP-EGTKAFDRAAEEVVRQC----GKLPNAIVIIGTAL--R---HK-- 275 (977)
Q Consensus 215 ~-------~~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~i~~~~----~glPLai~~~~~~l--~---~~-- 275 (977)
. ....+.+++.+.++..+++..++... ....-.+++.+.|++.+ |..+.|+.++-... + +.
T Consensus 190 ~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~ 269 (394)
T PRK00411 190 DPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRK 269 (394)
T ss_pred CHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 1 12467899999999999998876311 01111223344444444 55777777664432 1 11
Q ss_pred -ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHhhhc-CCC-CCCCcChHHHHHH--Hhhhccccc
Q 002037 276 -PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSC-LFP-PYYSVSMEEFVIH--GLVDRLFPQ 350 (977)
Q Consensus 276 -~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~~-~fp-~~~~i~~~~li~~--w~a~g~~~~ 350 (977)
+.+....+.+... .....-.+..||.+.|..+..++ ... +...+...++... .+++.+-..
T Consensus 270 I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 270 VTEEDVRKAYEKSE--------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred cCHHHHHHHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 4455555554431 12234457899998887655433 222 1134555555432 222211000
Q ss_pred ccchhhhhhcHHHHHHHHHhccccc
Q 002037 351 VGLLGEVGNRVHPVVLRLISSSLLL 375 (977)
Q Consensus 351 ~~~~~~~~~~~~~~l~~L~~~~li~ 375 (977)
. -....+.+|+.+|...|+|.
T Consensus 336 ~----~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 336 P----RTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred c----CcHHHHHHHHHHHHhcCCeE
Confidence 0 01234566889999999985
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.11 E-value=4.2e-12 Score=130.07 Aligned_cols=136 Identities=21% Similarity=0.277 Sum_probs=106.5
Q ss_pred cCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccC-CcCCCCCC-Cc
Q 002037 410 MKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSS-TNISSLAP-SL 485 (977)
Q Consensus 410 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp~-~~ 485 (977)
....+|..-......+.+..|.|+.+|. +..+++||.|+|+.|.++.+.++.|.++..|-.|-+.+ |+|+.+|. .|
T Consensus 57 GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F 136 (498)
T KOG4237|consen 57 GLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAF 136 (498)
T ss_pred CcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHh
Confidence 3555665555667778888888888876 46788888888888888888888888888876666555 78888887 67
Q ss_pred ccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCC
Q 002037 486 PCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNL 545 (977)
Q Consensus 486 ~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 545 (977)
+.|..|+.|.+.-|++.. ...+..+++|..|.+.+|.+..+++ .+..+..++++.+..|.
T Consensus 137 ~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 137 GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 888888888888887766 4677788888888888888888887 47788888888877665
No 28
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.11 E-value=6e-09 Score=118.35 Aligned_cols=284 Identities=15% Similarity=0.159 Sum_probs=181.8
Q ss_pred HHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhhccccchHHH----
Q 002037 83 VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTELEGDVEVL---- 157 (977)
Q Consensus 83 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~---- 157 (977)
+++.|... .+.+.+.|..++|.||||++-+.......=..+.|+++++. .+...+...++..++...++..+..
T Consensus 27 L~~~L~~~-~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~ 105 (894)
T COG2909 27 LLDRLRRA-NDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLL 105 (894)
T ss_pred HHHHHhcC-CCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHH
Confidence 44444443 24899999999999999999999876444467999998764 5788888888888875444322211
Q ss_pred ----------HHHHHHHHHH-ccceEEEEecCcccccc---ccccccCCCCCCCCeEEEEecCChHHH---hhccCCceE
Q 002037 158 ----------RAAFLSERLK-RQKRVLIILDDLWGKLD---LAVVGIPYGEEHKGCKIILTSRFKEVC---DEMESTNYV 220 (977)
Q Consensus 158 ----------~~~~l~~~l~-~~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~iivTtR~~~v~---~~~~~~~~~ 220 (977)
....+...+. -.++..+||||..-..+ -..+..-+....++-..|||||+..-. ..--.....
T Consensus 106 q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~ll 185 (894)
T COG2909 106 QKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELL 185 (894)
T ss_pred HhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHH
Confidence 2223333332 24689999999754321 122222223445688999999987432 111111223
Q ss_pred Ecc----CCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcC-CChhHHHHHHHHHhhCCCCCC
Q 002037 221 QVE----ELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRH-KPVREWNEAIKRKKASTPINV 295 (977)
Q Consensus 221 ~l~----~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~-~~~~~w~~~l~~l~~~~~~~~ 295 (977)
++. .|+.+|+.++|....+ .+-.+.-++.+.+...|-+-|+..++=.+++ .+.+.-...+
T Consensus 186 Ei~~~~Lrf~~eE~~~fl~~~~~----l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L----------- 250 (894)
T COG2909 186 EIGSEELRFDTEEAAAFLNDRGS----LPLDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL----------- 250 (894)
T ss_pred hcChHhhcCChHHHHHHHHHcCC----CCCChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc-----------
Confidence 332 5799999999998864 2333455789999999999999999988873 3333222211
Q ss_pred CCchHHHHHH-HHHhhccchhhHHHHHhhhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhcccc
Q 002037 296 EGIPEEVVLC-VALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLL 374 (977)
Q Consensus 296 ~~~~~~i~~~-l~~sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~li 374 (977)
.+..+.+..- ..--++.||+++|..++-||+++. +. .+|+..- . ..+.+..++++|.+++++
T Consensus 251 sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L---------t----g~~ng~amLe~L~~~gLF 313 (894)
T COG2909 251 SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL---------T----GEENGQAMLEELERRGLF 313 (894)
T ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH---------h----cCCcHHHHHHHHHhCCCc
Confidence 1111222211 223468999999999999999885 11 1222211 0 112233478999999998
Q ss_pred cC--CCCcccccchhhHHHHHHHHHhh
Q 002037 375 LE--GDRESCFRIHDDTRKVVKYIAAR 399 (977)
Q Consensus 375 ~~--~~~~~~~~mHdlv~~~a~~i~~~ 399 (977)
.. ++...+|+.|.+..||.+.-...
T Consensus 314 l~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 314 LQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred eeeecCCCceeehhHHHHHHHHhhhcc
Confidence 62 56678999999999998876644
No 29
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.08 E-value=4.4e-08 Score=109.47 Aligned_cols=287 Identities=16% Similarity=0.050 Sum_probs=163.7
Q ss_pred cccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCCC------CEEEEEEeCCCCCHHHHHHHH
Q 002037 72 PLKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF------DKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f------~~~~wv~~~~~~~~~~~~~~i 142 (977)
.+.||+++++++...+.+. +.....+.|+|++|+|||++|+.+++. .... -..+|+++....+...++..|
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i 95 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVEL 95 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHHH
Confidence 4789999999999988641 222457999999999999999999987 2111 145778887777788899999
Q ss_pred HHHhh---hccc--cchHHHHHHHHHHHHH-ccceEEEEecCccccc-c----ccccccCC-CCCC--CCeEEEEecCCh
Q 002037 143 ARFLN---TELE--GDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL-D----LAVVGIPY-GEEH--KGCKIILTSRFK 208 (977)
Q Consensus 143 ~~~l~---~~~~--~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-~----~~~l~~~~-~~~~--~gs~iivTtR~~ 208 (977)
++++. ...+ +.+.......+.+.+. .+++++||||+++... . +..+.... .... ....+|.+|+..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~ 175 (365)
T TIGR02928 96 ANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDL 175 (365)
T ss_pred HHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCc
Confidence 99883 2221 1122333444555553 3568899999998762 1 11211110 1111 233455555544
Q ss_pred HHHhhcc-------CCceEEccCCCHHHHHHHHHHhcC---CC-CCChhhHHHHHHHHHHhCCChhHH-HHHHHHh--c-
Q 002037 209 EVCDEME-------STNYVQVEELTDEDRLILFKKKAG---LP-EGTKAFDRAAEEVVRQCGKLPNAI-VIIGTAL--R- 273 (977)
Q Consensus 209 ~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~~---~~-~~~~~~~~~~~~i~~~~~glPLai-~~~~~~l--~- 273 (977)
.....+. ....+.+++.+.++..+++..++. .. .-.++..+.+.+++....|.|-.+ .++-... +
T Consensus 176 ~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 176 KFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred chHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3321111 124688999999999999988764 11 112233344556677777888433 3322211 1
Q ss_pred --C---CChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHhhhcC-C-CCCCCcChHHHHHHHhh-h
Q 002037 274 --H---KPVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSCL-F-PPYYSVSMEEFVIHGLV-D 345 (977)
Q Consensus 274 --~---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~-f-p~~~~i~~~~li~~w~a-~ 345 (977)
+ .+.+....+.+.+. .....-++..||.+.|..+..++. . .++..+...++...+-. .
T Consensus 256 ~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 256 REGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 1 13444444443321 122344567888888866554331 1 13445666666653211 1
Q ss_pred cccccccchhhhhhcHHHHHHHHHhccccc
Q 002037 346 RLFPQVGLLGEVGNRVHPVVLRLISSSLLL 375 (977)
Q Consensus 346 g~~~~~~~~~~~~~~~~~~l~~L~~~~li~ 375 (977)
..+. ...-....+.+++..|...|+|.
T Consensus 322 ~~~~---~~~~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 322 EDIG---VDPLTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred HhcC---CCCCcHHHHHHHHHHHHhcCCeE
Confidence 1110 00112244566788888888885
No 30
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.03 E-value=1e-08 Score=111.31 Aligned_cols=274 Identities=14% Similarity=0.128 Sum_probs=149.1
Q ss_pred CcccccchHHHHHHHHHHhhcC---CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDN---SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
.+..|+|+++.++++..++... ......+.++|++|+|||+||+.+++. ...+. .+..+.......+. ..+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~~~~~~~~~~l~-~~l~ 77 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITSGPALEKPGDLA-AILT 77 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---EeccchhcCchhHH-HHHH
Confidence 3557899999999988887531 222557889999999999999999988 43321 22211111111221 1222
Q ss_pred Hhhhcc----c--cchHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhc--cC
Q 002037 145 FLNTEL----E--GDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM--ES 216 (977)
Q Consensus 145 ~l~~~~----~--~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~--~~ 216 (977)
.++... + +.-.....+.+...+. +.+..+|+|+..+...+.. .. .+.+-|..||+...+...+ ..
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~---~~---~~~~li~~t~~~~~l~~~l~sR~ 150 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRL---DL---PPFTLVGATTRAGMLTSPLRDRF 150 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceee---cC---CCeEEEEecCCccccCHHHHhhc
Confidence 222110 0 0000111223333443 3455566766555443331 11 1256677778765443221 11
Q ss_pred CceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCC
Q 002037 217 TNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINVE 296 (977)
Q Consensus 217 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~ 296 (977)
...+++++++.++..+++.+.+... ...-..+....|++.|+|.|-.+..++..+ |..+. ........ .
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~--~~~~~~it-~ 219 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQ--VRGQKIIN-R 219 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH--HcCCCCcC-H
Confidence 3468999999999999999887622 223345677899999999996665444422 21110 00000000 0
Q ss_pred CchHHHHHHHHHhhccchhhHHHHHh-hhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHH-HHHhcccc
Q 002037 297 GIPEEVVLCVALGYDQLETVAKSCLQ-FSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVL-RLISSSLL 374 (977)
Q Consensus 297 ~~~~~i~~~l~~sy~~L~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~-~L~~~~li 374 (977)
..-......+..+|..++++.+..+. ..+.++++ .+..+.+.... | .........++ .|++.+||
T Consensus 220 ~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~li 286 (305)
T TIGR00635 220 DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIGFL 286 (305)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcCCc
Confidence 01123333356678889888777666 66667643 45554443221 1 11112223456 69999999
Q ss_pred cCC
Q 002037 375 LEG 377 (977)
Q Consensus 375 ~~~ 377 (977)
...
T Consensus 287 ~~~ 289 (305)
T TIGR00635 287 QRT 289 (305)
T ss_pred ccC
Confidence 643
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.00 E-value=6.2e-09 Score=113.53 Aligned_cols=274 Identities=13% Similarity=0.126 Sum_probs=149.7
Q ss_pred CCcccccchHHHHHHHHHHhhc---CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKD---NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
..+..|+|+++.++.+..++.. .+.....+.|+|++|+||||+|+.+++. ...+. ++.... ......+..+.
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~~~~-~~~~~~l~~~l 97 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITSGPA-LEKPGDLAAIL 97 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEeccc-ccChHHHHHHH
Confidence 4567899999999888776653 2233567899999999999999999998 43321 222111 11111222222
Q ss_pred HHhhhcc----c--cchHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhc--c
Q 002037 144 RFLNTEL----E--GDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM--E 215 (977)
Q Consensus 144 ~~l~~~~----~--~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~--~ 215 (977)
..+.... + +.-.....+.+...+. ..+..+|+|+..+...... .+ .+.+-|..|||...+...+ .
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---DL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---cC---CCceEEeecCCcccCCHHHHHh
Confidence 2222110 0 0000111122233332 3445555655444322211 11 1245567777755443221 1
Q ss_pred CCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCC
Q 002037 216 STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINV 295 (977)
Q Consensus 216 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~ 295 (977)
....+++++++.++..+++.+.+... ...-.++.+..|++.|+|.|-.+..+...+. .|.... ... .+
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~----~~~--~I 238 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARIL-GVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK----GDG--VI 238 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc----CCC--CC
Confidence 12468999999999999999887632 2233456789999999999954444443221 221110 000 11
Q ss_pred C-CchHHHHHHHHHhhccchhhHHHHHh-hhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHH-HHHhcc
Q 002037 296 E-GIPEEVVLCVALGYDQLETVAKSCLQ-FSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVL-RLISSS 372 (977)
Q Consensus 296 ~-~~~~~i~~~l~~sy~~L~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~-~L~~~~ 372 (977)
. ..-......+...|..|++..+..+. ....|+.+ .+..+.+.... | .+..+.+ +.++ .|++.+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l---g--~~~~~~~-------~~~e~~Li~~~ 305 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL---G--EERDTIE-------DVYEPYLIQQG 305 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH---C--CCcchHH-------HHhhHHHHHcC
Confidence 1 11134455566778889887777775 77778765 56666554321 1 1111222 2345 799999
Q ss_pred cccCC
Q 002037 373 LLLEG 377 (977)
Q Consensus 373 li~~~ 377 (977)
|++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 99643
No 32
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.92 E-value=2.1e-11 Score=126.19 Aligned_cols=268 Identities=19% Similarity=0.233 Sum_probs=150.8
Q ss_pred HHHHHhccceeEecCCCCccccccccc-CCCCCccEEeecccc-ccccccCCcccccccceEEEEEeecccceeeecccc
Q 002037 652 VKLLLEKTEYLTLTRSSNLQDIGEIDV-QGFTGLMCMHLRACS-MQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDI 729 (977)
Q Consensus 652 ~~~~~~~L~~L~l~~~~~~~~~~~l~~-~~l~~L~~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~ 729 (977)
+...+++++.|.+.+|..+++...... ..+++|++|.+..|. ++...-......+++|+.|++++|+.+.. .++
T Consensus 159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~----~gv 234 (483)
T KOG4341|consen 159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG----NGV 234 (483)
T ss_pred HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc----Ccc
Confidence 344568888888888877766533322 357788888888873 33332223456788888888888877654 122
Q ss_pred ccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceecc
Q 002037 730 EGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSV 809 (977)
Q Consensus 730 ~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~ 809 (977)
.....++..|+.+.+.+|..++.-... .....++.+.++++..|..++.........++..|+.|..++|..+.+.+..
T Consensus 235 ~~~~rG~~~l~~~~~kGC~e~~le~l~-~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~ 313 (483)
T KOG4341|consen 235 QALQRGCKELEKLSLKGCLELELEALL-KAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW 313 (483)
T ss_pred hHHhccchhhhhhhhcccccccHHHHH-HHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH
Confidence 222223555666666666554321000 1113455566666667776666533334455677777777777665543221
Q ss_pred chhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeeccccccccccc
Q 002037 810 DEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENK 889 (977)
Q Consensus 810 ~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~ 889 (977)
.- + ...++|+.|.+.+|..+.+..-.....+++.|+.|++.+|..+..- .+ ....
T Consensus 314 aL-----g-------------~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-tL------~sls 368 (483)
T KOG4341|consen 314 AL-----G-------------QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-TL------ASLS 368 (483)
T ss_pred HH-----h-------------cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-hH------hhhc
Confidence 10 0 1357777777777777666544444566777777777777654332 00 0112
Q ss_pred ccccccceeeccccccccccccCccc--cccCCCccEEEeccCCCCCC-CCCCCCCCcccccc
Q 002037 890 NVLPKLKILALEDLPELDSVYNGEIA--ALRWPSLEELKVWDCPKLMK-LPLDTRSAPKLETF 949 (977)
Q Consensus 890 ~~~~~L~~L~l~~c~~L~~l~~~~~~--~~~~~sL~~L~i~~C~~L~~-lp~~~~~~~~L~~l 949 (977)
..+|.|+.|.+++|..++.-....+. .-....|+.+.+.+||.+.. .-+.+.+++.|+.+
T Consensus 369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri 431 (483)
T KOG4341|consen 369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERI 431 (483)
T ss_pred cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCccccee
Confidence 45677777777777666544111000 01235677777777776654 12233445555554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.90 E-value=9.1e-10 Score=105.57 Aligned_cols=137 Identities=25% Similarity=0.360 Sum_probs=48.6
Q ss_pred cCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCC-ccc
Q 002037 429 DGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDA-SLI 507 (977)
Q Consensus 429 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~-~~i 507 (977)
.+.++..+...++.+++.|++.+|.+..+.. .-..+.+|++|++++|.+..+. .+..+++|++|++++|.++.. ..+
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l 83 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL 83 (175)
T ss_dssp ------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred ccccccccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence 3445556666666777888888888776643 1124678888888888888774 567788888888888888774 334
Q ss_pred -cCCCCccEEEccCCCCcccC--ccccCCCCCCEEEcCCCCCCCcc--ChhhhhcCccccEEEcc
Q 002037 508 -REFGELEVLILKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVI--PPNVISKLSQLEELYVG 567 (977)
Q Consensus 508 -~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~--p~~~i~~L~~L~~L~l~ 567 (977)
..+++|++|++++|+|..+- ..+..+++|++|++.+|.+...- -..++..+++|+.||-.
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 35788888888888777553 33677888999999888754331 12347788999998753
No 34
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.4e-07 Score=98.59 Aligned_cols=172 Identities=16% Similarity=0.193 Sum_probs=107.0
Q ss_pred CCcccccchHHHH---HHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVI---KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~---~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
.++..++|.+..+ .-|..++..+. +....+||++|+||||||+.++.. ...| ..++...+-.+-+++++
T Consensus 21 ~~lde~vGQ~HLlg~~~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f-----~~~sAv~~gvkdlr~i~ 93 (436)
T COG2256 21 KSLDEVVGQEHLLGEGKPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAF-----EALSAVTSGVKDLREII 93 (436)
T ss_pred CCHHHhcChHhhhCCCchHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCce-----EEeccccccHHHHHHHH
Confidence 3444555555444 22344455555 888899999999999999999988 5554 33333333233233333
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEEE--ecCChHH---HhhccC
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL--TSRFKEV---CDEMES 216 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~v---~~~~~~ 216 (977)
+.. ++....+++.+|++|+|..- .+.+.+ ++....|.-|+| ||.++.. ......
T Consensus 94 e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 94 EEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HHH----------------HHHHhcCCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhhh
Confidence 321 12222478999999999753 344433 344556776666 7887754 122334
Q ss_pred CceEEccCCCHHHHHHHHHHhcCCCC-C----Ch-hhHHHHHHHHHHhCCChhHH
Q 002037 217 TNYVQVEELTDEDRLILFKKKAGLPE-G----TK-AFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 217 ~~~~~l~~L~~~~~~~lf~~~~~~~~-~----~~-~~~~~~~~i~~~~~glPLai 265 (977)
..++++++|+.++-.+++.+.+.... . .. -.+++.+.++..++|---+.
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 47899999999999999998553111 1 11 23457788889998865433
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=2.3e-09 Score=102.79 Aligned_cols=132 Identities=26% Similarity=0.346 Sum_probs=48.4
Q ss_pred HhcCCCccEEEccCCcCCCCCCCcc-cCCCCCeEecCCCCCCCCccccCCCCccEEEccCCCCcccCccc-cCCCCCCEE
Q 002037 462 FEHTREIKNLDLSSTNISSLAPSLP-CLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGI-GTVSNLKLL 539 (977)
Q Consensus 462 ~~~l~~Lr~L~l~~~~~~~lp~~~~-~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 539 (977)
+.+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|.|+.++..+ ..+++|++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 346667899999999888763 455 57889999999999888888888999999999999998887655 368899999
Q ss_pred EcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEee
Q 002037 540 DLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIH 601 (977)
Q Consensus 540 ~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 601 (977)
++++|++...---..++.+++|+.|++.+|... +...-...-+..+++|+.||-.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~-------~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC-------EKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG-------GSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc-------chhhHHHHHHHHcChhheeCCE
Confidence 999887533211122677888888888776321 1112222334566777776654
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.82 E-value=3.2e-10 Score=121.81 Aligned_cols=176 Identities=24% Similarity=0.288 Sum_probs=108.4
Q ss_pred ccCccEEEeccCCCccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 419 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
+......+++.|.+..+|.. ..+..|..+.++.|.+..++... .++..|.+|+++.|+++.+|..++.|+ |+.|-++
T Consensus 74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 33444556666666666543 34555666666666666665543 566667777777777777776666554 6667777
Q ss_pred CCCCCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 498 NTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 498 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
+|+++. |..++.+.+|..||.+.|.+..+|..++.+.+|+.|+++.|+ +..+|++ +..| .|..||++.|..
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNki----- 223 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKI----- 223 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCce-----
Confidence 776666 666666666777777777777777777777777777776665 4446665 4444 366666665522
Q ss_pred ccccCcCccccccccCCCCcEEEeeecCcccccc
Q 002037 577 ETANGQNARFSEVASLTRLTVLYIHVSNTKVLSV 610 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 610 (977)
.....++.+|++|+.|.|..|-.+..+.
T Consensus 224 ------s~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 224 ------SYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred ------eecchhhhhhhhheeeeeccCCCCCChH
Confidence 2233456666677777766665554443
No 37
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.80 E-value=4.1e-10 Score=115.80 Aligned_cols=200 Identities=20% Similarity=0.257 Sum_probs=132.0
Q ss_pred ccCccEEEeccCCCccCCC--CCCCCCccEEEccC-CCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeE
Q 002037 419 LQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQN-NPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSL 494 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L 494 (977)
++++|+|+++.|.|..+.. +..++.+.+|.+.+ |.+++++.+.|.++..|+.|.+.-|.+..++. .+..+++|+.|
T Consensus 90 l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL 169 (498)
T KOG4237|consen 90 LHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL 169 (498)
T ss_pred hhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence 7789999999999988754 46777888777777 77888888888777777777776666654443 45555556555
Q ss_pred ecCCCCCCC-C-ccccCCCCccEEEccCCC--------------------------------------------------
Q 002037 495 HLENTHLND-A-SLIREFGELEVLILKGSR-------------------------------------------------- 522 (977)
Q Consensus 495 ~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~-------------------------------------------------- 522 (977)
.+.+|.+.. . ..+..+..++++.+..+.
T Consensus 170 slyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e 249 (498)
T KOG4237|consen 170 SLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE 249 (498)
T ss_pred cccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence 555554443 1 133333333333332221
Q ss_pred ------------CcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCcccccc
Q 002037 523 ------------IVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEV 589 (977)
Q Consensus 523 ------------l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 589 (977)
....|. .++.|++|+.|++++|++.. +-++.+..+..+++|++..+..... .-..+
T Consensus 250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~l~~v----------~~~~f 318 (498)
T KOG4237|consen 250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNKLEFV----------SSGMF 318 (498)
T ss_pred hHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcchHHHH----------HHHhh
Confidence 001122 26778888888888887544 4444578888888888776532211 11346
Q ss_pred ccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCc
Q 002037 590 ASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDD 629 (977)
Q Consensus 590 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 629 (977)
.++..|+.|++..|.+..+.+..+..+..|.+|.+..|.+
T Consensus 319 ~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 319 QGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 6778888899999888888888888888888888776643
No 38
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.80 E-value=1.3e-10 Score=120.44 Aligned_cols=262 Identities=17% Similarity=0.185 Sum_probs=163.1
Q ss_pred hhhHHHHHHHHhccceeEecCCCCccccc-ccccCCCCCccEEeeccc-cccccccCCcccccccceEEEEEeeccccee
Q 002037 646 NSIASWVKLLLEKTEYLTLTRSSNLQDIG-EIDVQGFTGLMCMHLRAC-SMQRIFHSNFYPTVQILEELHVEYCYSLKEV 723 (977)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~l~~~~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~ 723 (977)
......+...+++++.|.+..|..+++.. ..-..++++|++|.++.| .+.+.--.-+..++..|+.+...+|...+.
T Consensus 179 d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~l- 257 (483)
T KOG4341|consen 179 DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELEL- 257 (483)
T ss_pred HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccH-
Confidence 34445566667888888888877777652 223457888888888888 333311112244566677777777754432
Q ss_pred eeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccc
Q 002037 724 FCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLM 803 (977)
Q Consensus 724 ~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 803 (977)
+.+.......+-+.++++..|..+++.- .......+..|+.|..++|..+.......+.++.++|+.|.+.+|..+
T Consensus 258 ---e~l~~~~~~~~~i~~lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~f 333 (483)
T KOG4341|consen 258 ---EALLKAAAYCLEILKLNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQF 333 (483)
T ss_pred ---HHHHHHhccChHhhccchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchh
Confidence 1111112245667777777887776632 111123567888888888888877655566677888999999988876
Q ss_pred cceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeeccccc
Q 002037 804 EEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEE 883 (977)
Q Consensus 804 ~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~ 883 (977)
.+..... -..+++.|+.|++.+|....+....+...++|.|++|.++.|..+++-...
T Consensus 334 sd~~ft~------------------l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~---- 391 (483)
T KOG4341|consen 334 SDRGFTM------------------LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIR---- 391 (483)
T ss_pred hhhhhhh------------------hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhh----
Confidence 6542211 012578888888888877665433444567888888888888776553110
Q ss_pred ccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCC
Q 002037 884 KAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKL 936 (977)
Q Consensus 884 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~l 936 (977)
...........|..|.+.+||.++.-....+. .+++||.+++.+|....+=
T Consensus 392 ~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~--~c~~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 392 HLSSSSCSLEGLEVLELDNCPLITDATLEHLS--ICRNLERIELIDCQDVTKE 442 (483)
T ss_pred hhhhccccccccceeeecCCCCchHHHHHHHh--hCcccceeeeechhhhhhh
Confidence 01122345567888888888877654332222 2577888888887776653
No 39
>PRK06893 DNA replication initiation factor; Validated
Probab=98.72 E-value=8.1e-08 Score=98.56 Aligned_cols=149 Identities=17% Similarity=0.311 Sum_probs=92.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+.+.|+|+.|+|||+||+++++. ......+.|+.+.... ... ..+.+.+. +.-
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~---~~~--------------------~~~~~~~~--~~d 93 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ---YFS--------------------PAVLENLE--QQD 93 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh---hhh--------------------HHHHhhcc--cCC
Confidence 457899999999999999999998 3334456777653210 000 01112222 335
Q ss_pred EEEecCcccc---ccccc-cccCCCC-CCCCeEEEE-ecCC---------hHHHhhccCCceEEccCCCHHHHHHHHHHh
Q 002037 173 LIILDDLWGK---LDLAV-VGIPYGE-EHKGCKIIL-TSRF---------KEVCDEMESTNYVQVEELTDEDRLILFKKK 237 (977)
Q Consensus 173 LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~iiv-TtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 237 (977)
+||+||++.. .+|+. +...+.. ...|+.||| |++. +++...+.....+++++++.++.++++++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 8999999864 23332 1111111 123555554 4543 355666666678999999999999999988
Q ss_pred cCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 238 AGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
+... .-.-.+++..-|++++.|-.-++..+
T Consensus 174 a~~~-~l~l~~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 174 AYQR-GIELSDEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHc-CCCCCHHHHHHHHHhccCCHHHHHHH
Confidence 8622 23334567788888888765444433
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.72 E-value=1.2e-07 Score=106.59 Aligned_cols=178 Identities=15% Similarity=0.209 Sum_probs=106.5
Q ss_pred CCcccccchHHHHHH---HHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKS---VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~---l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
..+..++|++..+.. +..++..+. ...+.++|++|+||||+|+.+++. ...| +.++.......-.+.+.
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~--~~~ilL~GppGtGKTtLA~~ia~~~~~~~-----~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGR--LSSMILWGPPGTGKTTLARIIAGATDAPF-----EALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCC--CceEEEECCCCCCHHHHHHHHHHHhCCCE-----EEEecccccHHHHHHHH
Confidence 345567788877665 777776665 668889999999999999999988 4433 22222111111112222
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEE--ecCChHHH---hhccC
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIIL--TSRFKEVC---DEMES 216 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv--TtR~~~v~---~~~~~ 216 (977)
+.. ......+++.+|++|+++... +.+.+...+ . .|..++| ||.+.... .....
T Consensus 82 ~~~----------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l-e--~~~iilI~att~n~~~~l~~aL~SR 142 (413)
T PRK13342 82 EEA----------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHV-E--DGTITLIGATTENPSFEVNPALLSR 142 (413)
T ss_pred HHH----------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHh-h--cCcEEEEEeCCCChhhhccHHHhcc
Confidence 111 111123578899999998652 233332222 1 2444444 45544321 11122
Q ss_pred CceEEccCCCHHHHHHHHHHhcCCCC-CC-hhhHHHHHHHHHHhCCChhHHHHHHHH
Q 002037 217 TNYVQVEELTDEDRLILFKKKAGLPE-GT-KAFDRAAEEVVRQCGKLPNAIVIIGTA 271 (977)
Q Consensus 217 ~~~~~l~~L~~~~~~~lf~~~~~~~~-~~-~~~~~~~~~i~~~~~glPLai~~~~~~ 271 (977)
...+++++++.++..+++.+.+.... .. .-.++....|++.++|.+..+..+...
T Consensus 143 ~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 143 AQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred ceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 26789999999999999998764211 11 334567888999999988766544433
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=5.9e-10 Score=119.88 Aligned_cols=143 Identities=23% Similarity=0.372 Sum_probs=89.7
Q ss_pred ccEEEeccCCCccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCC
Q 002037 422 CEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 500 (977)
+..+.+..|.+..+|.. .++..|+.|+++.|.+..+|...+ .--|++|.+++|+++.+|+.++.+.+|..|+.+.|.
T Consensus 100 Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC--~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 100 LESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLC--DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE 177 (722)
T ss_pred HHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhh--cCcceeEEEecCccccCCcccccchhHHHhhhhhhh
Confidence 34444444555555443 355666666666666666665542 334667777777777777766666666677777666
Q ss_pred CCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 501 LND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 501 l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
+.. |+.++.+..|+.|+++.|.+..+|+.++.|+ |..||++.|+ ...+|.. |.+|+.||+|-+.+|
T Consensus 178 i~slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNk-is~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 178 IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNK-ISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCc-eeecchh-hhhhhhheeeeeccC
Confidence 665 6666667777777777776667776666443 6666776665 4456665 666777777666654
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.71 E-value=1.4e-09 Score=107.44 Aligned_cols=131 Identities=25% Similarity=0.326 Sum_probs=108.6
Q ss_pred ccCccEEEeccCCCccCCCCCC-CCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 419 LQNCEKLSLMDGNVTALPDQPK-CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
++.++.+++++|.+..+....+ .|++|.|+++.|.+..+.. +..+.+|..||||+|.++.+-..-.++.+.++|.|.
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 6678889999999888876644 5899999999999887765 678899999999999887765555677889999999
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCcccC--ccccCCCCCCEEEcCCCCCCCccCh
Q 002037 498 NTHLNDASLIREFGELEVLILKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVIPP 552 (977)
Q Consensus 498 ~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~ 552 (977)
+|.+.+.+.++++++|.+||+++|+|.++- .+||+++.|++|.+.+|.+ ..+|.
T Consensus 361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl-~~~vd 416 (490)
T KOG1259|consen 361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL-AGSVD 416 (490)
T ss_pred hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc-cccch
Confidence 999999999999999999999999988664 4699999999999999874 34443
No 43
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.67 E-value=1.1e-08 Score=112.40 Aligned_cols=131 Identities=27% Similarity=0.346 Sum_probs=78.6
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCC---ccEEEccCCcCCC-----CCCCcccC-CCCCeEecCCCCCCC------
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTRE---IKNLDLSSTNISS-----LAPSLPCL-EKLRSLHLENTHLND------ 503 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---Lr~L~l~~~~~~~-----lp~~~~~l-~~L~~L~L~~~~l~~------ 503 (977)
..+++|+.|++++|.+.......+..+.. |++|++++|.+.. +...+..+ ++|+.|++++|.+..
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 34667777777777766444444444444 7777777776652 22244455 677777777777663
Q ss_pred CccccCCCCccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCCCCccCh---hhhhcCccccEEEccCC
Q 002037 504 ASLIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQVIPP---NVISKLSQLEELYVGNS 569 (977)
Q Consensus 504 ~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~---~~i~~L~~L~~L~l~~~ 569 (977)
+..+..+.+|++|++++|.+. .++..+..+++|++|++++|.+...... ..+..+++|++|++++|
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCC
Confidence 234455667777777777665 3444455556777777777764322111 11445667777777765
No 44
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=1.6e-06 Score=99.47 Aligned_cols=183 Identities=13% Similarity=0.112 Sum_probs=112.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--c-CC-------------------CCEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IP-------------------FDKV 124 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~-~~-------------------f~~~ 124 (977)
...|..++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+. . .. |..+
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 4556788999999999999987765 2346679999999999999988876 1 11 1123
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--ccccccCCCCCCCCeEEE
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--LAVVGIPYGEEHKGCKII 202 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ii 202 (977)
++++.+.+..+.++ +++.+.. ...-..++.-++|||+++.... +..+...+-......++|
T Consensus 91 iEIDAas~rgVDdI-ReLIe~a----------------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FI 153 (830)
T PRK07003 91 VEMDAASNRGVDEM-AALLERA----------------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFI 153 (830)
T ss_pred EEecccccccHHHH-HHHHHHH----------------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEE
Confidence 33333222222211 1111111 0000124556889999987632 444444443334567777
Q ss_pred EecCChHH-Hhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh-hHHHHH
Q 002037 203 LTSRFKEV-CDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVII 268 (977)
Q Consensus 203 vTtR~~~v-~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~ 268 (977)
+||++.+- ... ...-..++++.++.++..+.+.+.+... ...-.++..+.|++.++|.. -|+..+
T Consensus 154 LaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~E-gI~id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 154 LATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEE-RIAFEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred EEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 77776543 211 1222579999999999999998877522 22334567889999998855 455543
No 45
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.63 E-value=6.8e-09 Score=113.97 Aligned_cols=183 Identities=20% Similarity=0.182 Sum_probs=125.0
Q ss_pred ccCccEEEeccCCCccCC--CCCCC---CCccEEEccCCCCCCCCh----hHHhcC-CCccEEEccCCcCC-----CCCC
Q 002037 419 LQNCEKLSLMDGNVTALP--DQPKC---PRLTTLFLQNNPFADIPN----AFFEHT-REIKNLDLSSTNIS-----SLAP 483 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~--~~~~~---~~L~~L~l~~~~~~~~~~----~~~~~l-~~Lr~L~l~~~~~~-----~lp~ 483 (977)
..+++.|+++++.+.... .+..+ ++|+.|++++|.+..... ..+..+ ++|+.|++++|.++ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 457888888888775211 11112 569999999998764221 234556 89999999999887 2344
Q ss_pred CcccCCCCCeEecCCCCCCC------CccccCCCCccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCCCCccCh
Q 002037 484 SLPCLEKLRSLHLENTHLND------ASLIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQVIPP 552 (977)
Q Consensus 484 ~~~~l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 552 (977)
.+..+.+|++|++++|.+.. +..+..+++|++|++++|.+. .++..+..+++|++|++++|.+....+.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 56677899999999999874 234556679999999999875 4555677889999999999986542222
Q ss_pred hhhhc----CccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccc
Q 002037 553 NVISK----LSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKV 607 (977)
Q Consensus 553 ~~i~~----L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 607 (977)
.+... .+.|++|++.+|..... ........+..+++|+.++++.+....
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~------~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDD------GAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcH------HHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 21222 37899999988743210 011122345566789999998877553
No 46
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.60 E-value=2.7e-07 Score=95.42 Aligned_cols=168 Identities=16% Similarity=0.258 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccc
Q 002037 75 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD 153 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 153 (977)
+....++.+..++.... ...+.|+|+.|+|||++|+.+++. .......++++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~--~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKG--DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH------hH-----------
Confidence 34566677777655433 568999999999999999999988 43444566665543211 00
Q ss_pred hHHHHHHHHHHHHHccceEEEEecCccccc---cc-cccccCCCC-CCCCeEEEEecCChH---------HHhhccCCce
Q 002037 154 VEVLRAAFLSERLKRQKRVLIILDDLWGKL---DL-AVVGIPYGE-EHKGCKIILTSRFKE---------VCDEMESTNY 219 (977)
Q Consensus 154 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~-~~l~~~~~~-~~~gs~iivTtR~~~---------v~~~~~~~~~ 219 (977)
..+...+. +.-+||+||++... .| +.+...+.. ...+.+||+||+... +...+.....
T Consensus 82 ------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~ 153 (226)
T TIGR03420 82 ------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLV 153 (226)
T ss_pred ------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCee
Confidence 01111122 23489999998653 22 222221111 123347888887532 2223333457
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGT 270 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 270 (977)
+++++++.++...++.+.+... ..+-.+++.+.+++.+.|.|..+..+..
T Consensus 154 i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 154 FQLPPLSDEEKIAALQSRAARR-GLQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred EecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 9999999999999988754311 1223345667777788888866655543
No 47
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.58 E-value=1.2e-05 Score=92.75 Aligned_cols=166 Identities=15% Similarity=0.127 Sum_probs=102.2
Q ss_pred ccchHHHHHHHHHHhhc---CCCceeEEEEEcCCCChHHHHHHHHHhh------cCCCC--EEEEEEeCCCCCHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKD---NSISINIIGVYGSGGIGKTTLMKQVMKQ------EIPFD--KVIFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~------~~~f~--~~~wv~~~~~~~~~~~~~~ 141 (977)
+.+|++++++|...|.. +.....++.|+|++|+|||+.++.|.+. ..... .+++|++..-.+...++..
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqv 836 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQV 836 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHH
Confidence 66999999999887754 2222357889999999999999999876 11222 3677887777788888899
Q ss_pred HHHHhhhccc--cchHHHHHHHHHHHHH-c-cceEEEEecCcccccc--ccccccCCC-CCCCCeEEEE--ecCChHH--
Q 002037 142 IARFLNTELE--GDVEVLRAAFLSERLK-R-QKRVLIILDDLWGKLD--LAVVGIPYG-EEHKGCKIIL--TSRFKEV-- 210 (977)
Q Consensus 142 i~~~l~~~~~--~~~~~~~~~~l~~~l~-~-~~~~LlvlDdv~~~~~--~~~l~~~~~-~~~~gs~iiv--TtR~~~v-- 210 (977)
|++++....+ +.........+...+. . ....+||||+|+.... -+.+..-+. ....+++|+| +|.+.+.
T Consensus 837 I~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLpe 916 (1164)
T PTZ00112 837 LYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPE 916 (1164)
T ss_pred HHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcch
Confidence 9988843322 1122233444444432 1 2346899999986521 111111111 1123455443 4433222
Q ss_pred ------HhhccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 211 ------CDEMESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 211 ------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
...++ ...+..+|.+.++-.+++..++.
T Consensus 917 rLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe 950 (1164)
T PTZ00112 917 RLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLE 950 (1164)
T ss_pred hhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHH
Confidence 11222 13467799999999999999876
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.58 E-value=7.5e-09 Score=102.48 Aligned_cols=131 Identities=23% Similarity=0.298 Sum_probs=104.8
Q ss_pred cCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCC
Q 002037 464 HTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSN 543 (977)
Q Consensus 464 ~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 543 (977)
..+.|..||||+|.|+.+-+++.-++.+|.|++++|.+.....+..+++|+.|||++|.+.++-..-.++.|.+.|.+++
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence 35678999999999999988998899999999999998887778999999999999999888877667888999999999
Q ss_pred CCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcc
Q 002037 544 NLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTK 606 (977)
Q Consensus 544 ~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 606 (977)
|. +..+ .+ +++|-+|..|+++++... .-.....+++++.|+++.+..|...
T Consensus 362 N~-iE~L-SG-L~KLYSLvnLDl~~N~Ie---------~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 362 NK-IETL-SG-LRKLYSLVNLDLSSNQIE---------ELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hh-Hhhh-hh-hHhhhhheeccccccchh---------hHHHhcccccccHHHHHhhcCCCcc
Confidence 86 4444 34 788889999998876321 1123456788888888888766543
No 49
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=4.2e-06 Score=95.12 Aligned_cols=180 Identities=12% Similarity=0.076 Sum_probs=109.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC--------------------CCEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP--------------------FDKV 124 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~--------------------f~~~ 124 (977)
+..+..++|.+...+.+.+++..+. -.+.+.++|+.|+||||+|+.+++. ..+ |-.+
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 3567788999999999999988765 2358899999999999999999887 111 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEE
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKII 202 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ii 202 (977)
+.++.+....+..+ +++.... ...-..+++-++|+|+|+... ....+...+.....+.++|
T Consensus 90 iEIDAAs~~~VddI-Reli~~~----------------~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FI 152 (702)
T PRK14960 90 IEIDAASRTKVEDT-RELLDNV----------------PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFL 152 (702)
T ss_pred EEecccccCCHHHH-HHHHHHH----------------hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEE
Confidence 22222222122111 1111111 000012566789999998652 3333433333333455677
Q ss_pred EecCChH-HH-hhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 203 LTSRFKE-VC-DEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 203 vTtR~~~-v~-~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
++|.+.. +. ........+++++++.++..+.+.+.+... ...-..+....|++.++|-+-.+
T Consensus 153 LaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE-gI~id~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 153 FATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE-QIAADQDAIWQIAESAQGSLRDA 216 (702)
T ss_pred EEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 6665543 32 112233689999999999999998876522 22334567788999999977443
No 50
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=1.3e-07 Score=87.48 Aligned_cols=120 Identities=21% Similarity=0.264 Sum_probs=80.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 173 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 173 (977)
-+++.|.|+-|+||||++++++.+-.....+++++..+.........+ ..+.+.+... .++.+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~----------------~~~~~~~~~~-~~~~~ 64 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD----------------LLEYFLELIK-PGKKY 64 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh----------------hHHHHHHhhc-cCCcE
Confidence 368999999999999999999988324456777766654321110000 1122222222 37788
Q ss_pred EEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhc------cCCceEEccCCCHHHH
Q 002037 174 IILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM------ESTNYVQVEELTDEDR 230 (977)
Q Consensus 174 lvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 230 (977)
++||+|....+|......+....+..+|++|+.+......- +....+++.||+..|-
T Consensus 65 i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 65 IFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 99999999988887766666655678999999988765321 1224688999998763
No 51
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=1.1e-06 Score=102.91 Aligned_cols=182 Identities=13% Similarity=0.118 Sum_probs=110.4
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC-C-------------------CCEEE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-P-------------------FDKVI 125 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~-------------------f~~~~ 125 (977)
..+..++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++. .. . |.-++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 456678899999999998887765 1345689999999999999999988 21 1 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEEE
Q 002037 126 FVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL 203 (977)
Q Consensus 126 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 203 (977)
+++......+.. .++|.+.+ ...-..+++-++|||+++.. .....+...+-......++|+
T Consensus 92 EidAas~~kVDd-IReLie~v----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFIL 154 (944)
T PRK14949 92 EVDAASRTKVDD-TRELLDNV----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLL 154 (944)
T ss_pred EeccccccCHHH-HHHHHHHH----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEE
Confidence 222221111111 12222211 11111367789999999865 334444333333334455555
Q ss_pred ec-CChHHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 204 TS-RFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 204 Tt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
+| ....+... ......|++++++.++..+.+.+.+... ......+....|++.++|.|--+..+
T Consensus 155 aTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 155 ATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred ECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 44 44444322 2223689999999999999998876421 22334567889999999988544333
No 52
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.53 E-value=2.5e-07 Score=97.62 Aligned_cols=287 Identities=19% Similarity=0.191 Sum_probs=178.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCC-CEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+.+.++|.|||||||++-.+..-...| +.+.++....-.|...+.-.++..++....... .....+..+.. .+|.
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~--~~~~~~~~~~~-~rr~ 90 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAHAASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD--SAVDTLVRRIG-DRRA 90 (414)
T ss_pred hheeeeeccCccceehhhhhhHhHhhhcccceeeeeccccCchhHhHHHHHhhcccccccch--HHHHHHHHHHh-hhhH
Confidence 6799999999999999999998854445 677778877777777777777776765443211 11222333333 6899
Q ss_pred EEEecCccccccc-cccccCCCCCCCCeEEEEecCChHHHhhccCCceEEccCCCHH-HHHHHHHHhcCC----CCCChh
Q 002037 173 LIILDDLWGKLDL-AVVGIPYGEEHKGCKIILTSRFKEVCDEMESTNYVQVEELTDE-DRLILFKKKAGL----PEGTKA 246 (977)
Q Consensus 173 LlvlDdv~~~~~~-~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~lf~~~~~~----~~~~~~ 246 (977)
++|+||..+..+- ..+...+..+.+.-.|+.|+|.... +.....+.+++|+.. ++.++|...+.. -.-...
T Consensus 91 llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~ 167 (414)
T COG3903 91 LLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDD 167 (414)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccceeecCC
Confidence 9999997665221 1122233344556678999987633 344567778888765 789998876641 111233
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHH----HhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHh
Q 002037 247 FDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKR----KKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQ 322 (977)
Q Consensus 247 ~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~----l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl 322 (977)
......+|.++.+|.|++|..+++..+.....+-...++. +... .....--.....+.+.+||.-|..-.+-.|-
T Consensus 168 ~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgwe~~~~~ 246 (414)
T COG3903 168 NAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGWERALFG 246 (414)
T ss_pred chHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhHHHHHhc
Confidence 4567899999999999999999999986655443333321 2211 1011111256889999999999999999999
Q ss_pred hhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHhcccccCCC--CcccccchhhHHHHHHHH
Q 002037 323 FSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLLLEGD--RESCFRIHDDTRKVVKYI 396 (977)
Q Consensus 323 ~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~--~~~~~~mHdlv~~~a~~i 396 (977)
-++.|...+..... .|.+-|= ......-.+..-+..+++.+++.-.+ ....++.-+-++.++...
T Consensus 247 rLa~~~g~f~~~l~----~~~a~g~-----~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yalae 313 (414)
T COG3903 247 RLAVFVGGFDLGLA----LAVAAGA-----DVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAE 313 (414)
T ss_pred chhhhhhhhcccHH----HHHhcCC-----ccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999876654422 2222221 11111122233456677888763222 222344444444444433
No 53
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.52 E-value=3.4e-06 Score=102.33 Aligned_cols=260 Identities=14% Similarity=0.126 Sum_probs=151.9
Q ss_pred ccchHHHHHHHHHHhhcCC-CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEE---EeCCCCC---HHHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFV---RVTQTPD---VKRVQDEIAR 144 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv---~~~~~~~---~~~~~~~i~~ 144 (977)
++||+.+++.|...+..-. ..-.++.+.|..|||||+++++|.+. .+.+...+-- ....+.. .....+++..
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6799999999998886532 23669999999999999999999988 3332111111 1112211 2223333333
Q ss_pred Hh-------------------hhcccc-----------------------chHHH-----HHHHHHHHHHccceEEEEec
Q 002037 145 FL-------------------NTELEG-----------------------DVEVL-----RAAFLSERLKRQKRVLIILD 177 (977)
Q Consensus 145 ~l-------------------~~~~~~-----------------------~~~~~-----~~~~l~~~l~~~~~~LlvlD 177 (977)
++ +..... ..... ....+.....+.++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 110000 00000 11122233335679999999
Q ss_pred Ccccc--cccc---ccccCCCC-CCCCeEE--EEecCCh--HHHhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhh
Q 002037 178 DLWGK--LDLA---VVGIPYGE-EHKGCKI--ILTSRFK--EVCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAF 247 (977)
Q Consensus 178 dv~~~--~~~~---~l~~~~~~-~~~gs~i--ivTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~ 247 (977)
|+.-. ..++ .+...... .-.-..| +.|.+.. .+.........|.+.||+..+...+.....+.. ....
T Consensus 162 DlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~--~~~~ 239 (849)
T COG3899 162 DLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT--KLLP 239 (849)
T ss_pred cccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc--cccc
Confidence 98422 1111 11111110 0001122 2333332 122223334689999999999999999988632 3344
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhcCC-------ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHH
Q 002037 248 DRAAEEVVRQCGKLPNAIVIIGTALRHK-------PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSC 320 (977)
Q Consensus 248 ~~~~~~i~~~~~glPLai~~~~~~l~~~-------~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~ 320 (977)
.+..+.|+++..|+|+.+..+-..+... +...|..-..++. ..+..+.+...+..-.+.||...+..
T Consensus 240 ~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~------~~~~~~~vv~~l~~rl~kL~~~t~~V 313 (849)
T COG3899 240 APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLG------ILATTDAVVEFLAARLQKLPGTTREV 313 (849)
T ss_pred chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcC------CchhhHHHHHHHHHHHhcCCHHHHHH
Confidence 5678999999999999999999888742 2333433222211 11222457777888999999999999
Q ss_pred HhhhcCCCCCCCcChHHHHHHH
Q 002037 321 LQFSCLFPPYYSVSMEEFVIHG 342 (977)
Q Consensus 321 fl~~~~fp~~~~i~~~~li~~w 342 (977)
+...|++-. .|+.+.|...+
T Consensus 314 l~~AA~iG~--~F~l~~La~l~ 333 (849)
T COG3899 314 LKAAACIGN--RFDLDTLAALA 333 (849)
T ss_pred HHHHHHhCc--cCCHHHHHHHH
Confidence 999998864 55566665543
No 54
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=3.3e-08 Score=103.55 Aligned_cols=205 Identities=24% Similarity=0.267 Sum_probs=132.7
Q ss_pred ccCccEEEeccCCCccCC---CCCCCCCccEEEccCCCCCCCC--hhHHhcCCCccEEEccCCcCCCCCCC--cccCCCC
Q 002037 419 LQNCEKLSLMDGNVTALP---DQPKCPRLTTLFLQNNPFADIP--NAFFEHTREIKNLDLSSTNISSLAPS--LPCLEKL 491 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~---~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~~~~lp~~--~~~l~~L 491 (977)
+.+++.+++.++.+...+ ....|++++.|+|++|-+.... ..+...+++|+.|+++.|.+.....+ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 567888888877776655 2467899999999998766432 34567899999999999987755442 2467899
Q ss_pred CeEecCCCCCCC---CccccCCCCccEEEccCCC-CcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEcc
Q 002037 492 RSLHLENTHLND---ASLIREFGELEVLILKGSR-IVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVG 567 (977)
Q Consensus 492 ~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~ 567 (977)
+.|.|++|.++. ......+++|+.|+|.+|. +..--.....++.|+.|||++|.+...-....++.++.|..|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 999999999875 3455678999999999983 332222345567899999999886553312236788888888877
Q ss_pred CCcCCccccccccCcCccccccccCCCCcEEEeeecCccccc-cCCCCCCCCcceEEEEec
Q 002037 568 NSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLS-VDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 627 (977)
.+....... .+.....-...+.+|+.|.+..|.....+ ......+++|+.|.+..+
T Consensus 280 ~tgi~si~~----~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 280 STGIASIAE----PDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ccCcchhcC----CCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 653211000 01111112344667888888777654332 122233455555554433
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=3.8e-06 Score=92.73 Aligned_cols=189 Identities=12% Similarity=0.093 Sum_probs=107.3
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c--CCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E--IPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~--~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
..+..++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++. . ..+.. .+........++..
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEK 84 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhc
Confidence 445678899999999988887654 2457899999999999999999987 2 11100 00000011111111
Q ss_pred Hhhhcc---c--cchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHHh
Q 002037 145 FLNTEL---E--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCD 212 (977)
Q Consensus 145 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~ 212 (977)
...... + ..........+.+.+. .+++-++|+|+++... .+..+...+.......++|++|.+. .+..
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~ 164 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPK 164 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhH
Confidence 000000 0 0000111112222211 2456699999998763 3444444443334466667666544 3322
Q ss_pred hc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 213 EM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 213 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
.+ .....+++++++.++..+.+.+.+.... ..-.++.+..|++.++|.|-.+
T Consensus 165 tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 165 TILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 2235799999999999998887664211 2233456788999999988543
No 56
>PLN03025 replication factor C subunit; Provisional
Probab=98.46 E-value=1.4e-06 Score=94.52 Aligned_cols=179 Identities=11% Similarity=0.151 Sum_probs=105.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++|.++.++.+..++..+. .+.+.++|+.|+||||+|+.+++. ...|. .++-++.++......+ +++.
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~v-r~~i 85 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVV-RNKI 85 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHH-HHHH
Confidence 3455678888888888888777655 556789999999999999999988 33443 2222333333332222 2222
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHHhhc-cCCce
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNY 219 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~-~~~~~ 219 (977)
+.+..... ....++.-++|+|+++... ....+...+......+++|+++... .+...+ .....
T Consensus 86 ~~~~~~~~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~ 152 (319)
T PLN03025 86 KMFAQKKV-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAI 152 (319)
T ss_pred HHHHhccc-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhc
Confidence 11110000 0012456799999998652 2222322222223456677766443 221111 11247
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
+++++++.++....+.+.+.... ..-.++....|++.++|-.
T Consensus 153 i~f~~l~~~~l~~~L~~i~~~eg-i~i~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 153 VRFSRLSDQEILGRLMKVVEAEK-VPYVPEGLEAIIFTADGDM 194 (319)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCH
Confidence 89999999999999888775211 1223456788899998855
No 57
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=4.7e-06 Score=90.33 Aligned_cols=174 Identities=16% Similarity=0.164 Sum_probs=111.4
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-------cCCCCEEEEEEe-CCCCCHHHHHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-------EIPFDKVIFVRV-TQTPDVKRVQDE 141 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-------~~~f~~~~wv~~-~~~~~~~~~~~~ 141 (977)
+..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.++.. ..|+|...|... +....+.++ ++
T Consensus 3 ~~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~ 80 (313)
T PRK05564 3 FHTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RN 80 (313)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HH
Confidence 3456788888999999887654 2457789999999999999999985 345565555442 222333332 22
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChHHH-hh-ccCC
Q 002037 142 IARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKEVC-DE-MEST 217 (977)
Q Consensus 142 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~~-~~~~ 217 (977)
+.+.+.... . .+++-++|+|+++.. ..+..+...+.....++.+|++|.+.+.. .. ....
T Consensus 81 ~~~~~~~~p---------------~-~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc 144 (313)
T PRK05564 81 IIEEVNKKP---------------Y-EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144 (313)
T ss_pred HHHHHhcCc---------------c-cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhc
Confidence 223222110 0 245556667766543 44566665565556788888888766432 11 1223
Q ss_pred ceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHH
Q 002037 218 NYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 266 (977)
Q Consensus 218 ~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 266 (977)
..+++.+++.++....+.+.... ...+.++.++..++|.|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 145 QIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred eeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHH
Confidence 68899999999998888776431 113346788999999886554
No 58
>PRK04195 replication factor C large subunit; Provisional
Probab=98.45 E-value=1.1e-05 Score=92.92 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=109.1
Q ss_pred CCCcccccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
+..+..++|+++.++++..|+..- +...+.+.|+|++|+||||+|+.+++... |+ ++-++++...+...+ ..++.
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~-~~-~ielnasd~r~~~~i-~~~i~ 86 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG-WE-VIELNASDQRTADVI-ERVAG 86 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-CC-EEEEcccccccHHHH-HHHHH
Confidence 344667889999999999888642 12267899999999999999999999832 22 233444443322222 22222
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc------ccccccCCCCCCCCeEEEEecCChH-HHh-hc-c
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD------LAVVGIPYGEEHKGCKIILTSRFKE-VCD-EM-E 215 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtR~~~-v~~-~~-~ 215 (977)
...... .+...++-+||+|+++.... ...+...+. ..+..||+|+.+.. ... .+ .
T Consensus 87 ~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrs 150 (482)
T PRK04195 87 EAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRN 150 (482)
T ss_pred HhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhc
Confidence 111000 00112678999999986522 222222211 22344666664432 111 11 2
Q ss_pred CCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 216 STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 216 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
....+++++++.++....+.+.+.... ..-..++...|++.++|-.-++......+
T Consensus 151 r~~~I~f~~~~~~~i~~~L~~i~~~eg-i~i~~eaL~~Ia~~s~GDlR~ain~Lq~~ 206 (482)
T PRK04195 151 ACLMIEFKRLSTRSIVPVLKRICRKEG-IECDDEALKEIAERSGGDLRSAINDLQAI 206 (482)
T ss_pred cceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 235789999999999998887764211 12235678999999999665544333333
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.45 E-value=1.5e-07 Score=106.33 Aligned_cols=172 Identities=32% Similarity=0.444 Sum_probs=97.9
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCC-CccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCCCCccEEE
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTR-EIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLI 517 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~ 517 (977)
....+..|.+.++.+..++... ..+. +|+.|+++++.+..+|..++.+++|+.|++++|++.+ +...+.+++|+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 114 ELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 3355666666666666655432 2332 5666666666666666666666666666666666666 34444666666666
Q ss_pred ccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcE
Q 002037 518 LKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTV 597 (977)
Q Consensus 518 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 597 (977)
+++|++..+|..+..+..|..|.+++|.... .+.. +.++.++..+.+.++.. ......++.+..++.
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~-~~~~-~~~~~~l~~l~l~~n~~-----------~~~~~~~~~l~~l~~ 259 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIE-LLSS-LSNLKNLSGLELSNNKL-----------EDLPESIGNLSNLET 259 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCccee-cchh-hhhcccccccccCCcee-----------eeccchhccccccce
Confidence 6666666666655555566666666664222 2222 55566666555443311 111344555666777
Q ss_pred EEeeecCccccccCCCCCCCCcceEEEEec
Q 002037 598 LYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 627 (977)
|+++.+.....+. .+...+++.|++.++
T Consensus 260 L~~s~n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 260 LDLSNNQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred ecccccccccccc--ccccCccCEEeccCc
Confidence 7776666555444 455666666666544
No 60
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=2e-06 Score=97.47 Aligned_cols=178 Identities=14% Similarity=0.133 Sum_probs=109.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC------------------------
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP------------------------ 120 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~------------------------ 120 (977)
...+..++|.+..++.|.+++..+. -.+.+.++|..|+||||+|+.+.+. ...
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG 90 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAG 90 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcC
Confidence 4456678999999999999988765 2346789999999999999999887 210
Q ss_pred -CCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHH----HccceEEEEecCcccc--ccccccccCCC
Q 002037 121 -FDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYG 193 (977)
Q Consensus 121 -f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~ 193 (977)
|..+++++.+....+.+ ...+.+.. ..++.-++|+|+++.. .....+...+-
T Consensus 91 ~hpDviEIdAas~~gVDd---------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 91 RFVDYIEMDAASNRGVDE---------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCCcceEecccccCCHHH---------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 00122222222111111 11222221 1356679999999866 23444444333
Q ss_pred CCCCCeE-EEEecCChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 194 EEHKGCK-IILTSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 194 ~~~~gs~-iivTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
....+.+ |++||....+...+ ..-..+.++.++.++..+.+.+.+... ......+..+.|++.++|.|.-...
T Consensus 150 EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~E-gi~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 150 EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEE-GIAHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 3333444 55555555553222 122579999999999999988876521 1222345678899999998854433
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.43 E-value=3.9e-06 Score=82.24 Aligned_cols=178 Identities=16% Similarity=0.186 Sum_probs=92.3
Q ss_pred CCcccccchHHHHHHHHHHh---hcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLL---KDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
..+..|+|.++.++.+--.+ ...+....-+.+||++|+||||||.-+++. ...|. +.+...-....++ ..++
T Consensus 21 ~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg~~i~k~~dl-~~il 96 (233)
T PF05496_consen 21 KSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSGPAIEKAGDL-AAIL 96 (233)
T ss_dssp SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEECCC--SCHHH-HHHH
T ss_pred CCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccchhhhhHHHH-HHHH
Confidence 44567778887777654333 333334778999999999999999999999 55552 2322111111111 1111
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--cc-------ccccccCC-CCC-----------CCCeEEE
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LD-------LAVVGIPY-GEE-----------HKGCKII 202 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~-------~~~l~~~~-~~~-----------~~gs~ii 202 (977)
.. + +++-+|++|++... .+ .+.....+ ... .+-+-|=
T Consensus 97 ~~--------------------l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTlig 154 (233)
T PF05496_consen 97 TN--------------------L--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIG 154 (233)
T ss_dssp HT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEE
T ss_pred Hh--------------------c--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEee
Confidence 11 1 23446666777542 00 01000000 001 1234567
Q ss_pred EecCChHHHhhccCC--ceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 203 LTSRFKEVCDEMEST--NYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 203 vTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
.|||...+...+..- ...+++.-+.+|-.++..+.+.. -.-+-.++.+.+|++++.|-|--..-+-+..
T Consensus 155 ATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~-l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 155 ATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI-LNIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC-TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH-hCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 799976664433332 24579999999999999887751 2234456789999999999996544443333
No 62
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=8.5e-06 Score=92.76 Aligned_cols=188 Identities=16% Similarity=0.075 Sum_probs=108.3
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
..+..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++. .+.+...+|.|.+. ..+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc--------~~i~~ 81 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC--------LAVRR 81 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh--------HHHhc
Confidence 445678899998888888887765 2356799999999999999999987 22232233332211 00000
Q ss_pred Hhhh-----ccccchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCC-hHHHh
Q 002037 145 FLNT-----ELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF-KEVCD 212 (977)
Q Consensus 145 ~l~~-----~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~ 212 (977)
.... .............+.+.+. .+++-++|+|+++.. ..+..+...+........+|++|.. ..+..
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 0000 0000000111112222221 246678999999755 2344444444333445555555543 33322
Q ss_pred hc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 213 EM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 213 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
.+ .....+++.+++.++..+.+.+.+.... ..-.++....|++.++|.+--+
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~eg-i~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEG-REAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 22 2235799999999999999988764221 2224567889999999988433
No 63
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.43 E-value=5e-07 Score=84.30 Aligned_cols=112 Identities=23% Similarity=0.311 Sum_probs=78.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCC-----CCEEEEEEeCCCCCHHHHHHHHHHHhhhcccc-chHHHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIP-----FDKVIFVRVTQTPDVKRVQDEIARFLNTELEG-DVEVLRAAFLSERL 166 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l 166 (977)
-+++.|+|.+|+|||++++.+++. ... -..++|+.+....+...+.+.|+..++..... .........+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 468999999999999999999988 221 35677999988889999999999999877665 44455557777777
Q ss_pred HccceEEEEecCcccc-c--cccccccCCCCCCCCeEEEEecCC
Q 002037 167 KRQKRVLIILDDLWGK-L--DLAVVGIPYGEEHKGCKIILTSRF 207 (977)
Q Consensus 167 ~~~~~~LlvlDdv~~~-~--~~~~l~~~~~~~~~gs~iivTtR~ 207 (977)
.+.+..+||+|+++.. . .++.+.. +.. ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~-l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRS-LLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHH-HTC-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHH-HHh-CCCCeEEEEECh
Confidence 7666689999999875 2 1222221 112 566777777654
No 64
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.2e-08 Score=102.09 Aligned_cols=130 Identities=20% Similarity=0.262 Sum_probs=70.3
Q ss_pred CCCCCccEEEccCCCCCCCCh-hHHhcCCCccEEEccCCcCCC---CCCCcccCCCCCeEecCCCCCCCC---ccccCCC
Q 002037 439 PKCPRLTTLFLQNNPFADIPN-AFFEHTREIKNLDLSSTNISS---LAPSLPCLEKLRSLHLENTHLNDA---SLIREFG 511 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~~---lp~~~~~l~~L~~L~L~~~~l~~~---~~i~~l~ 511 (977)
.++++|+...|.++.....+. .....++++|.||||.|-+.. +..-+..|++|+.|+|+.|.+..+ ..-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 456677777777776655443 344567777777777765442 222345666777777777765542 1122456
Q ss_pred CccEEEccCCCCc--ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 512 ELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 512 ~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
+|+.|.|+.|+++ .+-.....+++|..|++.+|.....-... ..-++.|++|+++++
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N 256 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNN 256 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCC
Confidence 6666666666655 22222344556666666666311111111 233455666666554
No 65
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.42 E-value=1.8e-06 Score=88.41 Aligned_cols=156 Identities=14% Similarity=0.178 Sum_probs=100.9
Q ss_pred HHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 002037 85 KLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLS 163 (977)
Q Consensus 85 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 163 (977)
+.++.+. +..+.+||++|+||||||+.+.+. +.+- ..||..|....-..-.+.|.++-..
T Consensus 155 s~ieq~~--ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~a~t~dvR~ife~aq~--------------- 215 (554)
T KOG2028|consen 155 SLIEQNR--IPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATNAKTNDVRDIFEQAQN--------------- 215 (554)
T ss_pred HHHHcCC--CCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccccchHHHHHHHHHHHH---------------
Confidence 3444555 889999999999999999999988 3332 6778887765555555555554321
Q ss_pred HHHHccceEEEEecCccc--cccccccccCCCCCCCCeEEEE--ecCChHH---HhhccCCceEEccCCCHHHHHHHHHH
Q 002037 164 ERLKRQKRVLIILDDLWG--KLDLAVVGIPYGEEHKGCKIIL--TSRFKEV---CDEMESTNYVQVEELTDEDRLILFKK 236 (977)
Q Consensus 164 ~~l~~~~~~LlvlDdv~~--~~~~~~l~~~~~~~~~gs~iiv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~lf~~ 236 (977)
.....++|.+|++|+|.. ..+.+.+ ++....|..++| ||.++.. ...+..-.++.+++|+.++...++.+
T Consensus 216 ~~~l~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~r 292 (554)
T KOG2028|consen 216 EKSLTKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMR 292 (554)
T ss_pred HHhhhcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHH
Confidence 111136899999999964 3333422 445566766555 8888765 22234446899999999999999987
Q ss_pred hcC---CC------CCCh---hhHHHHHHHHHHhCCCh
Q 002037 237 KAG---LP------EGTK---AFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 237 ~~~---~~------~~~~---~~~~~~~~i~~~~~glP 262 (977)
... +. -+.+ -...+.+-++..|.|-.
T Consensus 293 aia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa 330 (554)
T KOG2028|consen 293 AIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA 330 (554)
T ss_pred HHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH
Confidence 442 11 1111 12345566666677744
No 66
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.42 E-value=6.4e-07 Score=91.89 Aligned_cols=88 Identities=17% Similarity=0.182 Sum_probs=61.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCC--CCHHHHHHHHH-----HHhhhccccc--hHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT--PDVKRVQDEIA-----RFLNTELEGD--VEVLRAAFLS 163 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~--~~~~~~~~~i~-----~~l~~~~~~~--~~~~~~~~l~ 163 (977)
..++|+|++|+|||||++.+++. ..+|+.++|+.+.++ .++.++++.+. ..++...... ..........
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 48999999999999999999998 558999999997776 78999999983 3333211000 0011112222
Q ss_pred HHHHccceEEEEecCcccc
Q 002037 164 ERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 164 ~~l~~~~~~LlvlDdv~~~ 182 (977)
.+...++++++++|++...
T Consensus 97 ~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 97 RLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHCCCCEEEEEECHHHh
Confidence 2333589999999999754
No 67
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.41 E-value=1.6e-06 Score=82.90 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccc
Q 002037 75 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD 153 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~ 153 (977)
|++..+..+...+.... .+.+.|+|.+|+||||+|+.+++. ...-..++++...+..........+...
T Consensus 2 ~~~~~~~~i~~~~~~~~--~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-------- 71 (151)
T cd00009 2 GQEEAIEALREALELPP--PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-------- 71 (151)
T ss_pred chHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh--------
Confidence 67888888888877654 568999999999999999999998 3323456677665543322221111100
Q ss_pred hHHHHHHHHHHHHHccceEEEEecCcccc-----ccccccccCCCC---CCCCeEEEEecCChH
Q 002037 154 VEVLRAAFLSERLKRQKRVLIILDDLWGK-----LDLAVVGIPYGE---EHKGCKIILTSRFKE 209 (977)
Q Consensus 154 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~---~~~gs~iivTtR~~~ 209 (977)
............++.++|+||++.. ..+......... ...+..||+||....
T Consensus 72 ----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0000111111356789999999853 122222222211 135788888888653
No 68
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.40 E-value=2.5e-07 Score=104.68 Aligned_cols=175 Identities=31% Similarity=0.399 Sum_probs=142.0
Q ss_pred ccCccEEEeccCCCccCCCCCCCC--CccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEec
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCP--RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 496 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 496 (977)
...+..+.+.++.+..++...... +|+.|++.+|.+..++. .+..++.|+.|++++|.+..+|...+.+..|+.|++
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchhhhhh-hhhccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 456888899999999988876554 89999999999888753 357899999999999999999998889999999999
Q ss_pred CCCCCCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccc
Q 002037 497 ENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEV 575 (977)
Q Consensus 497 ~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 575 (977)
+++.+.. |..+..+.+|++|.+++|.+...+..+.++.++..|.+.+++.. .++.. ++.++++++|+++++..
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~-~~~l~~l~~L~~s~n~i---- 267 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPES-IGNLSNLETLDLSNNQI---- 267 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccch-hccccccceeccccccc----
Confidence 9999988 56667778899999999988888888999999999998888743 33444 78899999999887632
Q ss_pred cccccCcCccccccccCCCCcEEEeeecCcccc
Q 002037 576 EETANGQNARFSEVASLTRLTVLYIHVSNTKVL 608 (977)
Q Consensus 576 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 608 (977)
..+..++.+.+|+.|+++.+.....
T Consensus 268 --------~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 268 --------SSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred --------cccccccccCccCEEeccCcccccc
Confidence 2223377888999999987664433
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=6.6e-06 Score=92.82 Aligned_cols=187 Identities=17% Similarity=0.192 Sum_probs=108.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC--------------------CCEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP--------------------FDKV 124 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~--------------------f~~~ 124 (977)
+..+..++|.+.....+...+..+. -.+.+.++|+.|+||||+|+.+++. ... +..+
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 3455678898888888888777665 1256899999999999999999887 110 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEE
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 202 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii 202 (977)
+.++.+....+..+ ++|.+.... .-..+++-++|+|+++.. ...+.+...+........+|
T Consensus 89 ~el~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~I 151 (472)
T PRK14962 89 IELDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFV 151 (472)
T ss_pred EEEeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEE
Confidence 33333322222222 122221110 001246779999999754 22333433332223344444
Q ss_pred EecCC-hHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCC-ChhHHHHHHHHh
Q 002037 203 LTSRF-KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK-LPNAIVIIGTAL 272 (977)
Q Consensus 203 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~~l 272 (977)
++|.+ ..+...+ .....+++++++.++....+.+.+... ...-.+++...|++.++| ++.|+..+..+.
T Consensus 152 lattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e-gi~i~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 152 LATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE-GIEIDREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 44433 3343322 223578999999999999988876421 122335667888888865 567776665543
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=7.5e-06 Score=92.67 Aligned_cols=178 Identities=13% Similarity=0.120 Sum_probs=108.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--c-CCCC---------------------
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFD--------------------- 122 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f~--------------------- 122 (977)
+..+..++|.+..+..+...+..+. -.+.+.++|+.|+||||+|+.+++. . ....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 3456678899999988888776654 2458899999999999999999987 2 1110
Q ss_pred --EEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCC
Q 002037 123 --KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKG 198 (977)
Q Consensus 123 --~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~g 198 (977)
.++.++......+.++. ++.+... ..-..+++-++|+|+++.. ..+..+...+....+.
T Consensus 96 h~Dv~eidaas~~~vd~Ir-~iie~a~----------------~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~ 158 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIR-RIIESAE----------------YKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158 (507)
T ss_pred CCcEEEeeccCCCCHHHHH-HHHHHHH----------------hccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCC
Confidence 11222222222222211 1111110 0001256778999999865 3355554444433445
Q ss_pred eEEE-EecCChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh
Q 002037 199 CKII-LTSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 263 (977)
Q Consensus 199 s~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 263 (977)
..+| +||+...+...+ .....+++++++.++..+.+.+.+.... ..-..+....|++.++|.+-
T Consensus 159 ~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg-i~ie~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 159 IIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN-LKTDIEALRIIAYKSEGSAR 224 (507)
T ss_pred EEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHH
Confidence 5555 455555554332 2235789999999999999998875221 22234567889999999763
No 71
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.37 E-value=5e-06 Score=91.86 Aligned_cols=195 Identities=14% Similarity=0.165 Sum_probs=107.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCH--HHHHH--H
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDV--KRVQD--E 141 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~--~~~~~--~ 141 (977)
.+..++|+++.++.+..++..+. .+.+.++|+.|+||||+|+.+++. ...+. ..+.+++++..+. ..+.. .
T Consensus 13 ~~~~~~g~~~~~~~L~~~~~~~~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 90 (337)
T PRK12402 13 LLEDILGQDEVVERLSRAVDSPN--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPR 90 (337)
T ss_pred cHHHhcCCHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcc
Confidence 35567899999999999887665 556889999999999999999987 33322 2345554431100 00000 0
Q ss_pred HHHHhhhc-cccchHHHHHHHHHHHHH-----ccceEEEEecCcccccc--ccccccCCCCCCCCeEEEEecCChH-HHh
Q 002037 142 IARFLNTE-LEGDVEVLRAAFLSERLK-----RQKRVLIILDDLWGKLD--LAVVGIPYGEEHKGCKIILTSRFKE-VCD 212 (977)
Q Consensus 142 i~~~l~~~-~~~~~~~~~~~~l~~~l~-----~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtR~~~-v~~ 212 (977)
....++.. ............+.+... .+.+-+||+||++.... ...+...+......+++|+||.... +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~ 170 (337)
T PRK12402 91 FAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170 (337)
T ss_pred hhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCch
Confidence 00000000 000001111122211111 13445899999975521 2222222222234566777765432 222
Q ss_pred hc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHH
Q 002037 213 EM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 266 (977)
Q Consensus 213 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 266 (977)
.+ .....+++.+++.++..+++.+.+.... ..-..+....+++.++|.+-.+.
T Consensus 171 ~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~-~~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 171 PIRSRCLPLFFRAPTDDELVDVLESIAEAEG-VDYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhcCCceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 22 1225788999999999999988764221 12345678889999988764443
No 72
>PRK08727 hypothetical protein; Validated
Probab=98.35 E-value=4.6e-06 Score=85.84 Aligned_cols=146 Identities=16% Similarity=0.161 Sum_probs=89.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
...+.|+|..|+|||+||+++++. ......++|+++.+ ....+. ...+.+ .+.-
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~------~~~~~~-----------------~~~~~l--~~~d 95 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQA------AAGRLR-----------------DALEAL--EGRS 95 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHH------hhhhHH-----------------HHHHHH--hcCC
Confidence 356999999999999999999988 33334566775322 111111 111222 2446
Q ss_pred EEEecCccccc---ccc-ccccCCCC-CCCCeEEEEecCCh---------HHHhhccCCceEEccCCCHHHHHHHHHHhc
Q 002037 173 LIILDDLWGKL---DLA-VVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 173 LlvlDdv~~~~---~~~-~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
+||+||+.... .+. .+...+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+++
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a 175 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERA 175 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHH
Confidence 99999997542 222 11111111 12456799999853 223333445689999999999999999876
Q ss_pred CCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 239 GLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
... .-.-.+++..-|++.++|-.-++
T Consensus 176 ~~~-~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 176 QRR-GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHc-CCCCCHHHHHHHHHhCCCCHHHH
Confidence 521 22334566778888887654333
No 73
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=3.8e-06 Score=92.90 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=107.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
+..+..++|.+..+..+..++..+. -.+.+.++|+.|+||||+|+.+++. ....... ..+..... ...|..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~--~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN--EPCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc--cccCCCcH----HHHHHc
Confidence 3456678899999999988888766 1246899999999999999999987 2211100 00000000 111111
Q ss_pred Hhhhcc---c--cchHHHHHHHHHHHH----HccceEEEEecCcccc--ccccccccCCCCCCCCeEEE-EecCChHHHh
Q 002037 145 FLNTEL---E--GDVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII-LTSRFKEVCD 212 (977)
Q Consensus 145 ~l~~~~---~--~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtR~~~v~~ 212 (977)
...... + .....+....+.+.+ ..++.-++|+|+++.. ..+.++...+-.......+| .||....+..
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~ 166 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPE 166 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccH
Confidence 110000 0 000011112222222 1356679999999865 33555544433323344444 4555444422
Q ss_pred hc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh
Q 002037 213 EM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 263 (977)
Q Consensus 213 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 263 (977)
.+ .....|.+.+++.++..+.+.+.+... ...-.++....|++.++|.+-
T Consensus 167 TI~SRCq~~~f~~ls~~~i~~~L~~i~~~E-gi~~e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 167 TILSRCQDFIFKKVPLSVLQDYSEKLCKIE-NVQYDQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHhhhheeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCChHH
Confidence 22 223579999999999999888876522 223345678999999999873
No 74
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1e-05 Score=92.16 Aligned_cols=184 Identities=14% Similarity=0.169 Sum_probs=109.7
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cC---------------------CCCEEE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI---------------------PFDKVI 125 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~---------------------~f~~~~ 125 (977)
..+..++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++. .. .|...+
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 456678899999999999887654 2356789999999999999999876 11 122233
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEE-
Q 002037 126 FVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKII- 202 (977)
Q Consensus 126 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ii- 202 (977)
+++......+..+ ++|.+.+ ...-..+++-++|+|+++... ....+...+-.......+|
T Consensus 92 eidaas~~gvd~i-r~ii~~~----------------~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL 154 (546)
T PRK14957 92 EIDAASRTGVEET-KEILDNI----------------QYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFIL 154 (546)
T ss_pred EeecccccCHHHH-HHHHHHH----------------HhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEE
Confidence 3333222222221 1121111 111113567799999997652 2344433333333445454
Q ss_pred EecCChHHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh-hHHHHHHH
Q 002037 203 LTSRFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIGT 270 (977)
Q Consensus 203 vTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~ 270 (977)
+||....+... ......+++++++.++..+.+.+.+... .....++....|++.++|-+ -|+..+-.
T Consensus 155 ~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~e-gi~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 155 ATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKE-NINSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 55544444322 2223689999999999988888765421 12334566788999999966 45444443
No 75
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.32 E-value=1.3e-05 Score=88.77 Aligned_cols=172 Identities=16% Similarity=0.177 Sum_probs=97.8
Q ss_pred ccccchHHHHHHHHHHhhcC---C--------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHH
Q 002037 71 VPLKSALEVIKSVMKLLKDN---S--------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRV 138 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~---~--------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~ 138 (977)
..+.|.++.++++.+.+... . ...+-+.++|++|+|||++|+++++. ...| +.+.. ..+
T Consensus 122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~-----~~v~~----~~l 192 (364)
T TIGR01242 122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG----SEL 192 (364)
T ss_pred HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCE-----Eecch----HHH
Confidence 34678888888887765321 0 12456999999999999999999998 4443 22211 111
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCC--CCCCCeE
Q 002037 139 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EEHKGCK 200 (977)
Q Consensus 139 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ 200 (977)
... .++ . .......+.+......+.+|++||++.... +..+...+. ....+.+
T Consensus 193 ~~~---~~g-----~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 193 VRK---YIG-----E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred HHH---hhh-----H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 111 111 0 111112222222335678999999875310 111111111 1134677
Q ss_pred EEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 201 IILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 201 iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
||.||...+. .+.......++++..+.++..++|..++......++. -...+++.+.|..
T Consensus 264 vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 264 VIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred EEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 8888875533 2212234578999999999999999887532211111 1466777777764
No 76
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.31 E-value=8.3e-06 Score=84.06 Aligned_cols=162 Identities=12% Similarity=0.196 Sum_probs=96.3
Q ss_pred HHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchH
Q 002037 77 LEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVE 155 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 155 (977)
...+..+.++..... .+.+.|+|+.|+|||+||+.+++. ...-..+.++.+.....
T Consensus 30 ~~a~~~l~~~~~~~~--~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~--------------------- 86 (235)
T PRK08084 30 DSLLAALQNALRQEH--SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW--------------------- 86 (235)
T ss_pred HHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh---------------------
Confidence 334445545444333 468999999999999999999988 33334566776543100
Q ss_pred HHHHHHHHHHHHccceEEEEecCcccc---ccccccc-cCCCC-CCCC-eEEEEecCCh---------HHHhhccCCceE
Q 002037 156 VLRAAFLSERLKRQKRVLIILDDLWGK---LDLAVVG-IPYGE-EHKG-CKIILTSRFK---------EVCDEMESTNYV 220 (977)
Q Consensus 156 ~~~~~~l~~~l~~~~~~LlvlDdv~~~---~~~~~l~-~~~~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~ 220 (977)
....+.+.+. +--++++||+... .+|+... ..+.. ...| .++|+||+.. ++...+....++
T Consensus 87 --~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~ 162 (235)
T PRK08084 87 --FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIY 162 (235)
T ss_pred --hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCcee
Confidence 0001112222 1247899999754 2232211 11111 1123 3689998755 334445556789
Q ss_pred EccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHH
Q 002037 221 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 266 (977)
Q Consensus 221 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 266 (977)
++++++.++-.+++.+++... .-.-.+++..-|++.+.|-.-++.
T Consensus 163 ~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~ 207 (235)
T PRK08084 163 KLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLF 207 (235)
T ss_pred eecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHH
Confidence 999999999999998866421 223345677888888877554443
No 77
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=3.3e-05 Score=84.20 Aligned_cols=195 Identities=22% Similarity=0.228 Sum_probs=124.4
Q ss_pred ccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCCC-CE-EEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF-DK-VIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f-~~-~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
+.+|+++++++...+..- +....-+.|+|..|+|||+.++.+++. .... .. +++|++-...+..+++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 678999999998877431 111334999999999999999999998 2221 22 799999999999999999999986
Q ss_pred h-ccccchHHHHHHHHHHHHH-ccceEEEEecCcccccccc--ccccCCCCCC-CCeE--EEEecCChHHHh--------
Q 002037 148 T-ELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKLDLA--VVGIPYGEEH-KGCK--IILTSRFKEVCD-------- 212 (977)
Q Consensus 148 ~-~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~~~--~l~~~~~~~~-~gs~--iivTtR~~~v~~-------- 212 (977)
. ...+....+....+.+.+. .++.+++|||+++....-. .+-.-+.... ..++ ||..+.+..+..
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s 178 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKS 178 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhh
Confidence 3 3335555666667776665 4789999999998663321 1111111111 1343 344444443322
Q ss_pred hccCCceEEccCCCHHHHHHHHHHhcC----CCCCChhhHHHHHHHHHHhCC-ChhHHHHH
Q 002037 213 EMESTNYVQVEELTDEDRLILFKKKAG----LPEGTKAFDRAAEEVVRQCGK-LPNAIVII 268 (977)
Q Consensus 213 ~~~~~~~~~l~~L~~~~~~~lf~~~~~----~~~~~~~~~~~~~~i~~~~~g-lPLai~~~ 268 (977)
.++. ..+..+|=+.+|-..++..++. ...-.+..-+.+..++..-+| .=.||..+
T Consensus 179 ~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 179 SLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred ccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2222 3477899999999999988774 112233344445555555554 33444443
No 78
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=7.5e-06 Score=94.69 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=107.8
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC-CCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-PFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
..|..++|.+..++.+.+.+..+. -.+.+.++|..|+||||+|+.+++. .. .+. ..........+.|..
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIEQ 84 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHHc
Confidence 456678899999999999887765 2345789999999999999999887 21 110 001111122222211
Q ss_pred Hhh-----hccccchHHHHHHHHHHHH----HccceEEEEecCcccc--ccccccccCCCCCCCCeEEE-EecCChHHHh
Q 002037 145 FLN-----TELEGDVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII-LTSRFKEVCD 212 (977)
Q Consensus 145 ~l~-----~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtR~~~v~~ 212 (977)
.-. .........+....+.+.. ..+++-++|+|+++.. .....+...+-......++| +||....+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 000 0000000011111121111 1367779999999865 23344433332323344444 4554444432
Q ss_pred h-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 213 E-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 213 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
. ......|++++++.++..+.+.+.+... .....++....|++.++|.+--+..
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e-~i~~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAE-QIPFEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 2223689999999999999998876311 1223456678899999998854433
No 79
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.30 E-value=1.6e-06 Score=92.24 Aligned_cols=87 Identities=15% Similarity=0.155 Sum_probs=60.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCC--CHHHHHHHHHHHhhhc-cccchHH------HHHHHHHH
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP--DVKRVQDEIARFLNTE-LEGDVEV------LRAAFLSE 164 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~-~~~~~~~------~~~~~l~~ 164 (977)
..+|+|++|+||||||+++|+. ..+|+.++||.+.+.. ++.++++.|...+-.. .+..... ........
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999 5589999999999887 7788888876322111 1111111 11111122
Q ss_pred HHHccceEEEEecCcccc
Q 002037 165 RLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 165 ~l~~~~~~LlvlDdv~~~ 182 (977)
....+++++|++|++...
T Consensus 251 ~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 251 LVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHcCCCEEEEEEChHHH
Confidence 223589999999999654
No 80
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.30 E-value=1.2e-05 Score=88.10 Aligned_cols=179 Identities=12% Similarity=0.146 Sum_probs=104.8
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEe--CCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRV--TQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~--~~~~~~~~~~~~i~ 143 (977)
..+..++|+++.++.+..++.... .+.+.|+|..|+||||+|+.+++. ...+.. .++.+ +.......+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~~--~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~~~~~~i- 89 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEKN--MPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGIDVIRNKI- 89 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchHHHHHHH-
Confidence 445568899999999999987765 556799999999999999999988 333321 22222 2222222111111
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--ccccccCCCCCCCCeEEEEecCCh-HHHhh-ccCCce
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--LAVVGIPYGEEHKGCKIILTSRFK-EVCDE-MESTNY 219 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtR~~-~v~~~-~~~~~~ 219 (977)
..+....+ .....+-++++|+++.... ...+...+......+++|+++... .+... ......
T Consensus 90 ~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 90 KEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 11100000 0013456899999875421 223322222223445677666432 22111 112246
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
+++++++.++....+.+.+.... ..-.++....+++.++|.+--+
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~-~~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEG-IEITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 89999999999999888775221 1223557888999999987543
No 81
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=1.6e-05 Score=79.15 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=91.2
Q ss_pred HHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC--------------------CCCEEEEEEeCC-CCCHHHH
Q 002037 82 SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI--------------------PFDKVIFVRVTQ-TPDVKRV 138 (977)
Q Consensus 82 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~--------------------~f~~~~wv~~~~-~~~~~~~ 138 (977)
.+.+.+..+. -...+.++|+.|+||||+|+.+.+. .. .+....++.... ...++.+
T Consensus 3 ~l~~~i~~~~-~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGR-LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 3445555544 2367899999999999999999887 21 111112222211 1111111
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHHhhc-
Q 002037 139 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM- 214 (977)
Q Consensus 139 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~- 214 (977)
+++.+.+... -..+.+-++|+||++... ..+.+...+....+.+.+|++|++. .+...+
T Consensus 82 -~~i~~~~~~~----------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~ 144 (188)
T TIGR00678 82 -RELVEFLSRT----------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIR 144 (188)
T ss_pred -HHHHHHHccC----------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHH
Confidence 1122221100 002567789999987652 2344444443334456677666654 222211
Q ss_pred cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 215 ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 215 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
.....+++.+++.++..+.+.+. + -.++.+..|++.++|.|..
T Consensus 145 sr~~~~~~~~~~~~~~~~~l~~~-g------i~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 145 SRCQVLPFPPLSEEALLQWLIRQ-G------ISEEAAELLLALAGGSPGA 187 (188)
T ss_pred hhcEEeeCCCCCHHHHHHHHHHc-C------CCHHHHHHHHHHcCCCccc
Confidence 12358999999999999988886 2 1246788999999998853
No 82
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.8e-05 Score=85.99 Aligned_cols=194 Identities=12% Similarity=0.095 Sum_probs=111.8
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC---CCEEEEEEeCCCCCHHHHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP---FDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~---f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
.+..++|.++..+.+...+..+. -...+.|+|+.|+||||+|+.+++. ... +... ............+.|+
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQIA 96 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHHH
Confidence 44568899999999999887765 2457999999999999999999988 211 2111 0011111122333333
Q ss_pred HHhh-------hccc-------cchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeE-EE
Q 002037 144 RFLN-------TELE-------GDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCK-II 202 (977)
Q Consensus 144 ~~l~-------~~~~-------~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~-ii 202 (977)
..-. ...+ .....+....+.+++. .+++-++|+|+++... ....+...+.....+.. |+
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiL 176 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEE
Confidence 2211 0000 0011222334444443 3567799999998652 22333222222223344 55
Q ss_pred EecCChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHH
Q 002037 203 LTSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 203 vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 269 (977)
+|++...+.... .....+++.+++.++..+++.+.... . . ..++....+++.++|.|.....+.
T Consensus 177 it~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~-~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-Q-G-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-c-C-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555544332222 12258999999999999999885321 1 1 224557889999999997655443
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=2.1e-05 Score=86.55 Aligned_cols=176 Identities=11% Similarity=0.061 Sum_probs=102.5
Q ss_pred cccccchHHHHHHHHHHhhcCCC--------ceeEEEEEcCCCChHHHHHHHHHhh--cCC-------------------
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSI--------SINIIGVYGSGGIGKTTLMKQVMKQ--EIP------------------- 120 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~--------~~~vi~I~G~gGiGKTtLa~~v~~~--~~~------------------- 120 (977)
+..++|.+..++.+.+++..+.. -.+.+.++|+.|+|||++|+.++.. ...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 44578999999999988876531 2567899999999999999999876 110
Q ss_pred CCEEEEEEeCC-CCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCC
Q 002037 121 FDKVIFVRVTQ-TPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHK 197 (977)
Q Consensus 121 f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~ 197 (977)
+.-+.++.... ...+.++ +++.+.+... -..+++-++|+|+++... ....+...+-....
T Consensus 84 hpD~~~i~~~~~~i~i~~i-R~l~~~~~~~----------------p~~~~~kViiIDead~m~~~aanaLLk~LEep~~ 146 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEV-RELVTIAARR----------------PSTGRWRIVVIEDADRLTERAANALLKAVEEPPP 146 (394)
T ss_pred CCCEEEeccccccCCHHHH-HHHHHHHHhC----------------cccCCcEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 00112221111 1111111 1121211100 002455688889998652 22333333333334
Q ss_pred CeEEEEecCCh-HHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 198 GCKIILTSRFK-EVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 198 gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
+..+|++|.+. .+...+ .....+.+++++.++..+.+.+..+ ...+.+..++..++|.|.....+
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555555554 443222 2236899999999999988875432 11355788999999999655433
No 84
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=1.2e-05 Score=90.10 Aligned_cols=179 Identities=13% Similarity=0.097 Sum_probs=110.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c--C-------------------CCCEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E--I-------------------PFDKV 124 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~--~-------------------~f~~~ 124 (977)
+..+.+++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++. . . .+..+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 3556778899998888888887665 2348999999999999999999874 1 0 11223
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEE
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKII 202 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ii 202 (977)
+.++.+....+.++ ++|.+..... --.+++-++|+|+++... ....+...+....+..++|
T Consensus 88 ~eidaas~~~vddI-R~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDDI-KVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHHH-HHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 44554443333332 2222221100 002466789999997652 2444443343334456555
Q ss_pred Eec-CChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 203 LTS-RFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 203 vTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
++| ....+...+ .....+++++++.++..+.+.+.+... ...-.++....|++.++|-+-.
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~E-gi~i~~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKE-NIEHDEESLKLIAENSSGSMRN 213 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHH
Confidence 554 444443322 223678999999999999998877522 2233456678899999987743
No 85
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.28 E-value=4.3e-06 Score=98.89 Aligned_cols=170 Identities=17% Similarity=0.226 Sum_probs=97.8
Q ss_pred CCCcccccchHHHHH---HHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIK---SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~---~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
+..+..++|++..+. .+...+..+. ...+.++|++|+||||+|+.+++. ..+|. .++... ..+..+ +++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~--~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~~-~~i~di-r~~ 96 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADR--VGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAVL-AGVKDL-RAE 96 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhhh-hhhHHH-HHH
Confidence 344556788887774 4555666555 667899999999999999999988 54442 111110 011110 111
Q ss_pred HHHhhhccccchHHHHHHHHHHHHH-ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEE--ecCChH--HHhh-c
Q 002037 143 ARFLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL--TSRFKE--VCDE-M 214 (977)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv--TtR~~~--v~~~-~ 214 (977)
.....+.+. .+++.++|||||+.. .+.+.+... ...|..++| ||.+.. +... .
T Consensus 97 ----------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~---lE~g~IiLI~aTTenp~~~l~~aL~ 157 (725)
T PRK13341 97 ----------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW---VENGTITLIGATTENPYFEVNKALV 157 (725)
T ss_pred ----------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH---hcCceEEEEEecCCChHhhhhhHhh
Confidence 111111111 246789999999754 233333321 123555555 444432 2111 1
Q ss_pred cCCceEEccCCCHHHHHHHHHHhcCC------CCCChhhHHHHHHHHHHhCCCh
Q 002037 215 ESTNYVQVEELTDEDRLILFKKKAGL------PEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 215 ~~~~~~~l~~L~~~~~~~lf~~~~~~------~~~~~~~~~~~~~i~~~~~glP 262 (977)
.....+.+++++.++...++.+.+.. .....-.+++...|++.+.|..
T Consensus 158 SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 158 SRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred ccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 22357999999999999999886641 1112233566788888888754
No 86
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.27 E-value=7.6e-06 Score=94.08 Aligned_cols=180 Identities=13% Similarity=0.096 Sum_probs=105.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC-C-------------------CCEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-P-------------------FDKV 124 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~-------------------f~~~ 124 (977)
+..+..++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++. .. . |-.+
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 4556788999999999999888765 2357899999999999999999876 11 1 1111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--ccccccCCCCCCCCeEEE
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--LAVVGIPYGEEHKGCKII 202 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~ii 202 (977)
+.++.+....+.. .++++.... ..-..+++-++|+|+++.... ...+...+.......++|
T Consensus 91 lEidaAs~~gVd~-IRelle~a~----------------~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 91 LEIDAASNTGIDN-IREVLENAQ----------------YAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred EEEeccccCCHHH-HHHHHHHHH----------------hhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 2222222222211 111111110 000125667899999976532 223332332223345566
Q ss_pred EecCCh-HHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 203 LTSRFK-EVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 203 vTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
++|.+. .+... .+....+++++++.++....+.+.+... ...-..+....|++.++|.+.-+
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kE-gi~id~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSE-KIAYEPPALQLLGRAAAGSMRDA 217 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHhCCCHHHH
Confidence 655443 23211 1222467888999999999998877522 12234567889999999987433
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.2e-05 Score=91.71 Aligned_cols=180 Identities=13% Similarity=0.103 Sum_probs=107.3
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCC-------------------CCEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIP-------------------FDKV 124 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~-------------------f~~~ 124 (977)
+..+..++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++. ... |.-+
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 4556778899999999999997765 1346789999999999999999987 111 1123
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEE
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 202 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii 202 (977)
+.++.+....+..+ +++.+.+... -..++.-++|+|+|+.. ....++...+.......++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 33433333333322 2222221110 01356678999999865 23333433333333456565
Q ss_pred EecCC-hHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 203 LTSRF-KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 203 vTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
++|.+ ..+...+ .....+++++++.++....+.+.+.... ..-..+....|++.++|-+.-+
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg-i~~~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN-VEFENAALDLLARAANGSVRDA 217 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHH
Confidence 55443 3332211 2225688999999998887776654211 2223456778889999977433
No 88
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=1.4e-05 Score=92.20 Aligned_cols=192 Identities=15% Similarity=0.100 Sum_probs=106.7
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--c-CCC--CEEEEEEeCCCCCHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPF--DKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f--~~~~wv~~~~~~~~~~~~~~i 142 (977)
..+..++|.+..++.|.+++..+. -.+.+.++|+.|+||||+|+.+++. . ... .+... .........+.|
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 456678899999999999888765 2357799999999999999999776 1 110 00000 011111222222
Q ss_pred HHHhhhc---cc--cchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEE-ecCChHH
Q 002037 143 ARFLNTE---LE--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKEV 210 (977)
Q Consensus 143 ~~~l~~~---~~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TtR~~~v 210 (977)
...-... .+ .....+....+.+... .++.-++|||+|+.. ..+..+...+.......++|+ ||....+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 1100000 00 0000111111222211 245568999999865 234444433333334555554 4444444
Q ss_pred Hhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 211 CDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 211 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
... ......+++++++.++..+.+.+.+... ...-..+....|++.++|-+--+
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e-gi~ie~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE-NVPAEPQALRLLARAARGSMRDA 222 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHH
Confidence 322 2223689999999999999998876422 12223467788999999977443
No 89
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=2.3e-06 Score=101.40 Aligned_cols=102 Identities=20% Similarity=0.367 Sum_probs=73.9
Q ss_pred CccEEEccCCcCC-CCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCc-ccCccccCCCCCCEEEcC
Q 002037 467 EIKNLDLSSTNIS-SLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIV-ELPNGIGTVSNLKLLDLS 542 (977)
Q Consensus 467 ~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~ 542 (977)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+.. |..++.+++|++|+|++|++. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777777776 566677788888888888887764 567778888888888888776 677778888888888888
Q ss_pred CCCCCCccChhhhhc-CccccEEEccCC
Q 002037 543 NNLFLQVIPPNVISK-LSQLEELYVGNS 569 (977)
Q Consensus 543 ~~~~~~~~p~~~i~~-L~~L~~L~l~~~ 569 (977)
+|.+...+|.. ++. +.++..+++.++
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChH-HhhccccCceEEecCC
Confidence 88777777776 443 345556666554
No 90
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=6.2e-07 Score=70.40 Aligned_cols=58 Identities=36% Similarity=0.604 Sum_probs=33.4
Q ss_pred CccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCC
Q 002037 443 RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTH 500 (977)
Q Consensus 443 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 500 (977)
+|++|++.+|.+..++...|.++++|++|++++|.+..+++ .+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555566555555555555566666666666666555544 45555555555555554
No 91
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.22 E-value=3.8e-05 Score=85.54 Aligned_cols=182 Identities=16% Similarity=0.140 Sum_probs=108.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC---------------------CCCEE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI---------------------PFDKV 124 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~---------------------~f~~~ 124 (977)
..+..++|.++.++.+.+++..+. -.+.+.++|+.|+||||+|+.++.. .. +++ .
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~ 88 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-V 88 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-E
Confidence 445567899999999999887654 2357889999999999999999877 11 122 2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEE
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII 202 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii 202 (977)
++++......+.. .+++...+... -..+++-++|+|+++.. .....+...+........+|
T Consensus 89 ~~~~~~~~~~~~~-~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lI 151 (355)
T TIGR02397 89 IEIDAASNNGVDD-IREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 151 (355)
T ss_pred EEeeccccCCHHH-HHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEE
Confidence 2332221111111 12222221100 00245668899998755 22333433333333456666
Q ss_pred EecCChH-HHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHH
Q 002037 203 LTSRFKE-VCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 203 vTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 269 (977)
++|.+.. +...+ .....+++++++.++..+.+..++.... ..-.++.+..+++.++|.|..+....
T Consensus 152 l~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 152 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEG-IKIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCChHHHHHHH
Confidence 6665544 22221 2235788999999999999888764221 12234678889999999886555443
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.21 E-value=4.2e-05 Score=83.54 Aligned_cols=193 Identities=12% Similarity=0.011 Sum_probs=109.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC-CCEEE----EEEeCCCCCHHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-FDKVI----FVRVTQTPDVKRVQDE 141 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~-f~~~~----wv~~~~~~~~~~~~~~ 141 (977)
.+..++|.++..+.+.+.+..+. -...+.++|+.|+||+|+|..+++. ... ..... -.+.. ........+.
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~c~~ 94 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPVARR 94 (365)
T ss_pred chhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChHHHH
Confidence 34567899999999999887765 2347899999999999999999887 222 11000 00000 0000112222
Q ss_pred HHHHhhhc---------cc-----cchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEE
Q 002037 142 IARFLNTE---------LE-----GDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKI 201 (977)
Q Consensus 142 i~~~l~~~---------~~-----~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~i 201 (977)
|...-..+ .. .....+....+.+++. .+++.++|+|+++... ....+...+.....++.+
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~ 174 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLF 174 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEE
Confidence 22111000 00 0011222333333332 3567799999998652 233333333333345666
Q ss_pred EEecCChH-HHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 202 ILTSRFKE-VCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 202 ivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
|++|.+.+ +... ......+.+.+++.++..+++.+..... .++....++..++|.|+....+
T Consensus 175 IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 175 LLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 67666654 3222 2223689999999999999998865311 1122367899999999865544
No 93
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=2.5e-05 Score=89.07 Aligned_cols=196 Identities=15% Similarity=0.144 Sum_probs=106.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
+..+.+++|++..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++. ... |... .........+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCC-CCCcccHHHHHHHc
Confidence 3456678899999999999887654 2357899999999999999999887 211 1100 00111111111111
Q ss_pred Hhhhcc---cc--chHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEE-ecCChHHHh
Q 002037 145 FLNTEL---EG--DVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKEVCD 212 (977)
Q Consensus 145 ~l~~~~---~~--~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TtR~~~v~~ 212 (977)
...... .. ....+....+.+... .+++-++|+|+++.. ..+..+...+........+|+ |+....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 100000 00 000001111111111 134446999999764 233344333322233455554 444434432
Q ss_pred h-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh-hHHHHHHH
Q 002037 213 E-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIGT 270 (977)
Q Consensus 213 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~ 270 (977)
. ......+++.+++.++....+.+.+.... ..-..+.+..+++.++|-+ .|+..+-.
T Consensus 165 TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISRCQRYNFKKLNNSELQELLKSIAKKEK-IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 22235789999999999988888764211 1122456788999999965 44444443
No 94
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=3.4e-06 Score=99.89 Aligned_cols=109 Identities=22% Similarity=0.357 Sum_probs=94.1
Q ss_pred CccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC-CCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccEEEcc
Q 002037 443 RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILK 519 (977)
Q Consensus 443 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~ 519 (977)
.++.|+|.+|.+....+..+..+++|+.|+|++|.+. .+|..++.+++|++|+|++|.+.. |..++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999988766667899999999999999997 678899999999999999999886 7889999999999999
Q ss_pred CCCCc-ccCccccCC-CCCCEEEcCCCCCCCccC
Q 002037 520 GSRIV-ELPNGIGTV-SNLKLLDLSNNLFLQVIP 551 (977)
Q Consensus 520 ~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~~~p 551 (977)
+|.+. .+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99987 889888764 477889999886544433
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=9.2e-05 Score=84.98 Aligned_cols=187 Identities=12% Similarity=0.128 Sum_probs=110.0
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC-CCC-------------------EEE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-PFD-------------------KVI 125 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~f~-------------------~~~ 125 (977)
..+..++|.+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++. .. ..+ -++
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 445677888888888888887654 2467889999999999999999987 21 111 022
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEEE
Q 002037 126 FVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL 203 (977)
Q Consensus 126 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv 203 (977)
+++......+..+ +.|.+.+ ...-..+++-++|+|+++.. .....+...+........+|+
T Consensus 92 eId~a~~~~Id~i-R~L~~~~----------------~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 92 EIDGASNRGIDDA-KRLKEAI----------------GYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred EEecccccCHHHH-HHHHHHH----------------HhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEE
Confidence 2322111111111 1111111 00001356679999999765 233444433333334455555
Q ss_pred ecCC-hHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh-hHHHHHHHHhc
Q 002037 204 TSRF-KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIGTALR 273 (977)
Q Consensus 204 TtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~~~l~ 273 (977)
+|.+ ..+...+ .....+++++++.++..+.+.+.+... ...-..+.+..|++.++|-+ .|+..+...+.
T Consensus 155 aTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~e-gi~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 155 ATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGRE-GVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred ecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 5544 4443221 222578999999999999988866421 12234567888999999955 67777665543
No 96
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.19 E-value=2.5e-05 Score=91.67 Aligned_cols=201 Identities=19% Similarity=0.153 Sum_probs=109.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCC---CEEEEEEeCCC---CCHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPF---DKVIFVRVTQT---PDVKR 137 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f---~~~~wv~~~~~---~~~~~ 137 (977)
+..+..++|++..+..+.+.+.... ...+.|+|++|+||||+|+.+++. ...+ ...-|+.+... .+...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~~--~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASPF--PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 3445567899988888888775544 567999999999999999999876 2222 12345544321 12222
Q ss_pred HHHHHH---------------HHhhhc------------------cccchHHHHHHHHHHHHHccceEEEEecCcccc--
Q 002037 138 VQDEIA---------------RFLNTE------------------LEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK-- 182 (977)
Q Consensus 138 ~~~~i~---------------~~l~~~------------------~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-- 182 (977)
+...++ ...+.. ..+.-+......+...+. .+++.++-|+.|..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~ 306 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDP 306 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCc
Confidence 211111 000100 000011223344555554 46677776555433
Q ss_pred ccccccccCCCCCCCCeEEEE--ecCChHH-Hhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHh
Q 002037 183 LDLAVVGIPYGEEHKGCKIIL--TSRFKEV-CDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQC 258 (977)
Q Consensus 183 ~~~~~l~~~~~~~~~gs~iiv--TtR~~~v-~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~ 258 (977)
..|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.++++.+.+.... ..-.+++.+.|+++.
T Consensus 307 ~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls~eal~~L~~ys 385 (615)
T TIGR02903 307 NVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLAAGVEELIARYT 385 (615)
T ss_pred ccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHCC
Confidence 335555444444445555555 6665432 1111 1124678999999999999998775221 111234555555555
Q ss_pred CCChhHHHHHHHH
Q 002037 259 GKLPNAIVIIGTA 271 (977)
Q Consensus 259 ~glPLai~~~~~~ 271 (977)
..-+-|+..++..
T Consensus 386 ~~gRraln~L~~~ 398 (615)
T TIGR02903 386 IEGRKAVNILADV 398 (615)
T ss_pred CcHHHHHHHHHHH
Confidence 4445555555443
No 97
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.19 E-value=1.9e-05 Score=80.13 Aligned_cols=155 Identities=23% Similarity=0.310 Sum_probs=89.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cC-CCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EI-PFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 170 (977)
...+.|+|..|+|||.|.+++++. +. .=..++++ +..++...+...+... ....+++.+. .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~~~~~~~--------~~~~~~~~~~--~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFADALRDG--------EIEEFKDRLR--S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHHHHHHTT--------SHHHHHHHHC--T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHHHHHHcc--------cchhhhhhhh--c
Confidence 456899999999999999999998 22 22356676 3445556665555431 1233444443 4
Q ss_pred eEEEEecCcccccc---cc-ccccCCC-CCCCCeEEEEecCCh---------HHHhhccCCceEEccCCCHHHHHHHHHH
Q 002037 171 RVLIILDDLWGKLD---LA-VVGIPYG-EEHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKK 236 (977)
Q Consensus 171 ~~LlvlDdv~~~~~---~~-~l~~~~~-~~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 236 (977)
-=+|++||++.... |. .+..-+. ....|.+||+|++.. ++...+.....+++++++.++..+++.+
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 45889999976522 21 1111111 113466899999554 2234455556899999999999999998
Q ss_pred hcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 237 KAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
++... .-.-.++++.-|++.+.+..-.+
T Consensus 178 ~a~~~-~~~l~~~v~~~l~~~~~~~~r~L 205 (219)
T PF00308_consen 178 KAKER-GIELPEEVIEYLARRFRRDVREL 205 (219)
T ss_dssp HHHHT-T--S-HHHHHHHHHHTTSSHHHH
T ss_pred HHHHh-CCCCcHHHHHHHHHhhcCCHHHH
Confidence 87521 12233456666666665544333
No 98
>PRK09087 hypothetical protein; Validated
Probab=98.18 E-value=1.4e-05 Score=81.32 Aligned_cols=140 Identities=14% Similarity=0.110 Sum_probs=86.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 173 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 173 (977)
.+.+.|+|..|+|||+|++.+++.. ...+++.. .+..++.. .+.. -+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~----~~~~i~~~------~~~~~~~~--------------------~~~~---~~ 90 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS----DALLIHPN------EIGSDAAN--------------------AAAE---GP 90 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc----CCEEecHH------HcchHHHH--------------------hhhc---Ce
Confidence 4579999999999999999888762 11233221 11111111 1111 27
Q ss_pred EEecCccccc-cccccccCCCC-CCCCeEEEEecCC---------hHHHhhccCCceEEccCCCHHHHHHHHHHhcCCCC
Q 002037 174 IILDDLWGKL-DLAVVGIPYGE-EHKGCKIILTSRF---------KEVCDEMESTNYVQVEELTDEDRLILFKKKAGLPE 242 (977)
Q Consensus 174 lvlDdv~~~~-~~~~l~~~~~~-~~~gs~iivTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~ 242 (977)
+++||++... +-+++...+.. ...|..||+|++. +++...+.....+++++++.++-.+++++++...
T Consensus 91 l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~- 169 (226)
T PRK09087 91 VLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADR- 169 (226)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHc-
Confidence 8889996531 11222111111 1336678888873 3344455566789999999999999999988532
Q ss_pred CChhhHHHHHHHHHHhCCChhHHHH
Q 002037 243 GTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 243 ~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
.-.-.+++..-|++.+.|..-++..
T Consensus 170 ~~~l~~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 170 QLYVDPHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred CCCCCHHHHHHHHHHhhhhHHHHHH
Confidence 2233466788888888887665554
No 99
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=1.5e-05 Score=82.26 Aligned_cols=149 Identities=12% Similarity=0.161 Sum_probs=87.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+.+.|+|..|+|||+||+.+++. ...-..+.+++...... . + ... .+.-
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------~----~-----------------~~~--~~~~ 92 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------A----F-----------------DFD--PEAE 92 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------H----H-----------------hhc--ccCC
Confidence 468899999999999999999988 22222445554433110 0 0 011 2334
Q ss_pred EEEecCccccccc--cccccCCCC-CCCCe-EEEEecCChHHHh--------hccCCceEEccCCCHHHHHHHHHHhcCC
Q 002037 173 LIILDDLWGKLDL--AVVGIPYGE-EHKGC-KIILTSRFKEVCD--------EMESTNYVQVEELTDEDRLILFKKKAGL 240 (977)
Q Consensus 173 LlvlDdv~~~~~~--~~l~~~~~~-~~~gs-~iivTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~lf~~~~~~ 240 (977)
++|+||++..... ..+...+.. ...+. .||+|++...... .+.....++++++++++-..++.+.+..
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 7888999754221 122111111 12333 4677766543211 2222368899999998877777765431
Q ss_pred CCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 241 PEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
....-.+++...+++...|.+..+..+...+
T Consensus 173 -~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 -RGLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred -cCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1123345677888888899888777666554
No 100
>PTZ00202 tuzin; Provisional
Probab=98.17 E-value=2.5e-05 Score=83.66 Aligned_cols=164 Identities=15% Similarity=0.166 Sum_probs=101.1
Q ss_pred CCcccccchHHHHHHHHHHhhcCC-CceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFL 146 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 146 (977)
.+..+|+||++++..+...|.+.+ ...++++|+|++|+|||||++.+..... ....+++.. +..++++.|+..|
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~--~~qL~vNpr---g~eElLr~LL~AL 333 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG--MPAVFVDVR---GTEDTLRSVVKAL 333 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC--ceEEEECCC---CHHHHHHHHHHHc
Confidence 345579999999999999886543 2356999999999999999999997733 123334333 6799999999999
Q ss_pred hhccccchHHHHHHHHHHHH----Hc-cceEEEEecCcccccccccc---ccCCCCCCCCeEEEEecCChHHHh---hcc
Q 002037 147 NTELEGDVEVLRAAFLSERL----KR-QKRVLIILDDLWGKLDLAVV---GIPYGEEHKGCKIILTSRFKEVCD---EME 215 (977)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~l----~~-~~~~LlvlDdv~~~~~~~~l---~~~~~~~~~gs~iivTtR~~~v~~---~~~ 215 (977)
+.... ....+....+.+.+ .. +++.+||+-=-+ -..+..+ ...+.....-|.|++----+.+.. ...
T Consensus 334 GV~p~-~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lp 411 (550)
T PTZ00202 334 GVPNV-EACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLP 411 (550)
T ss_pred CCCCc-ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCc
Confidence 97322 22233334444333 23 677777773211 1111100 001122233466666544333311 112
Q ss_pred CCceEEccCCCHHHHHHHHHHhc
Q 002037 216 STNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 216 ~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
.-..|.+++++.++|.++-++..
T Consensus 412 rldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 412 RLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred cceeEecCCCCHHHHHHHHhhcc
Confidence 22578999999999998877665
No 101
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.17 E-value=4.1e-05 Score=78.97 Aligned_cols=200 Identities=14% Similarity=0.119 Sum_probs=122.3
Q ss_pred CCCCcccccchHHHHHHHHHHhhcCC-CceeEEEEEcCCCChHHHHHHHHHhh-cCCCC------EEEEEEeCCCCCHHH
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFD------KVIFVRVTQTPDVKR 137 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~------~~~wv~~~~~~~~~~ 137 (977)
..+..+|...-.+.++.+.+++.... ...+-+.|+|..|+|||++++.+... ...++ .|+.|.+....+...
T Consensus 32 ~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 32 RADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred hcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 34555665555666777777665543 34668999999999999999999987 22221 467788888999999
Q ss_pred HHHHHHHHhhhccccc-hHHHHHHHHHHHHHccceEEEEecCccccc-----ccccc---ccCCCCCCCCeEEEEecCCh
Q 002037 138 VQDEIARFLNTELEGD-VEVLRAAFLSERLKRQKRVLIILDDLWGKL-----DLAVV---GIPYGEEHKGCKIILTSRFK 208 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~-~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l---~~~~~~~~~gs~iivTtR~~ 208 (977)
++..|+.+++...... ........+.+.++.-+--+||+|++.+.- +-.++ ...+...-.-+-|.|-|++.
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A 191 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREA 191 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHH
Confidence 9999999999776433 233334444556665667789999997641 11111 11122222334566666544
Q ss_pred HHHhhcc-----CCceEEccCCCHHHH-HHHHHHh---cC-CCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 209 EVCDEME-----STNYVQVEELTDEDR-LILFKKK---AG-LPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 209 ~v~~~~~-----~~~~~~l~~L~~~~~-~~lf~~~---~~-~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
--+-..+ -..++.++....++- ..|+... .. .....-...+++..|...++|+.--+
T Consensus 192 ~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l 258 (302)
T PF05621_consen 192 YRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGEL 258 (302)
T ss_pred HHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHH
Confidence 2221111 113566776655443 3443322 22 22223345788999999999977433
No 102
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=3.3e-05 Score=88.94 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=106.7
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCC---------------------CCEEE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP---------------------FDKVI 125 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~---------------------f~~~~ 125 (977)
..+..++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++. ... |...+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 456678899999999999888755 1346789999999999999999877 111 11122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--ccccccCCCCCCCCeEEEE
Q 002037 126 FVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--LAVVGIPYGEEHKGCKIIL 203 (977)
Q Consensus 126 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iiv 203 (977)
+++.+....+..+ +++....... -..+++-++|+|+++.... ...+...+........+|+
T Consensus 92 ei~~~~~~~vd~i-r~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL 154 (527)
T PRK14969 92 EVDAASNTQVDAM-RELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFIL 154 (527)
T ss_pred EeeccccCCHHHH-HHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEE
Confidence 3322222222111 1222211100 0025677999999986532 3334333333334555555
Q ss_pred ecCCh-HHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh-HHHHH
Q 002037 204 TSRFK-EVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVII 268 (977)
Q Consensus 204 TtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 268 (977)
+|.+. .+... ......+++++++.++..+.+.+.+... .....++....|++.++|.+- |+..+
T Consensus 155 ~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e-gi~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 155 ATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE-NIPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55443 33211 1112578999999999998888776421 122334567889999999774 44444
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3e-05 Score=86.65 Aligned_cols=196 Identities=12% Similarity=0.116 Sum_probs=109.0
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--c-CCCCEEEEEE-eCCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVR-VTQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f~~~~wv~-~~~~~~~~~~~~~i~ 143 (977)
..+..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++. . ..++...|.. +......-...+.+.
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 345678899999998888887765 2346889999999999999999987 2 2111111110 011111111222222
Q ss_pred HHhhhcc---c--cchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEec-CChHHH
Q 002037 144 RFLNTEL---E--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTS-RFKEVC 211 (977)
Q Consensus 144 ~~l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~v~ 211 (977)
.....+. + .....+....+.+.+. .+++-++|+|+++... .+..+...+....+.+.+|++| +...+.
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~ 171 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIP 171 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhH
Confidence 1100000 0 0000111222222221 2466788999987653 3444444444444566665555 444443
Q ss_pred hhcc-CCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 212 DEME-STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 212 ~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
..+. ....+++++++.++..+.+...+.. ....-..+.+..|++.++|.+--+
T Consensus 172 ~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~-~g~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 172 ATIASRCQRFNFKRIPLEEIQQQLQGICEA-EGISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHcCCCHHHH
Confidence 2221 1247889999999998888877641 112234567889999999977433
No 104
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=2.4e-06 Score=67.09 Aligned_cols=56 Identities=27% Similarity=0.489 Sum_probs=29.6
Q ss_pred CccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCC
Q 002037 467 EIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSR 522 (977)
Q Consensus 467 ~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~ 522 (977)
+|++|++++|.+..+|+ .+..+++|++|++++|.+.. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666665554 44555555555555555444 3344444455555444443
No 105
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=7.5e-08 Score=95.66 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=18.0
Q ss_pred ccccceeeccCccCcceeeecccccccccccceEEEeec
Q 002037 736 LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDC 774 (977)
Q Consensus 736 ~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C 774 (977)
|+.|+.|.++.|..+- +.........|+|.+|++.+|
T Consensus 337 f~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cchheeeehhhhcCCC--hHHeeeeccCcceEEEEeccc
Confidence 4555555555544321 112233345566666666665
No 106
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.11 E-value=0.00022 Score=80.67 Aligned_cols=163 Identities=13% Similarity=0.138 Sum_probs=101.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c--CCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E--IPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~--~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 170 (977)
..-+.|+|..|+|||+|++++++. . ..-..+++++. .++...+...++... .....+++.+. .
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~------~~~~~~~~~~~--~ 206 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH------KEIEQFKNEIC--Q 206 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh------hHHHHHHHHhc--c
Confidence 356899999999999999999986 2 22234555533 456666666654210 12233333333 3
Q ss_pred eEEEEecCccccc---c-ccccccCCCC-CCCCeEEEEecCCh---------HHHhhccCCceEEccCCCHHHHHHHHHH
Q 002037 171 RVLIILDDLWGKL---D-LAVVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKK 236 (977)
Q Consensus 171 ~~LlvlDdv~~~~---~-~~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 236 (977)
.-+||+||+.... . .+.+..-+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 4589999996542 1 1222111111 12345688887543 2233344456788999999999999999
Q ss_pred hcCCCCC-ChhhHHHHHHHHHHhCCChhHHHHHHH
Q 002037 237 KAGLPEG-TKAFDRAAEEVVRQCGKLPNAIVIIGT 270 (977)
Q Consensus 237 ~~~~~~~-~~~~~~~~~~i~~~~~glPLai~~~~~ 270 (977)
++..... ..-.+++..-|++.++|.|-.+..+..
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 8853211 134467889999999999977665553
No 107
>PRK05642 DNA replication initiation factor; Validated
Probab=98.10 E-value=3.3e-05 Score=79.48 Aligned_cols=149 Identities=18% Similarity=0.275 Sum_probs=88.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
...+.|+|..|+|||.||+++++. ...-..++|++..+ +... ...+.+.+.+ - =
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~------~~~~-----------------~~~~~~~~~~-~-d 99 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE------LLDR-----------------GPELLDNLEQ-Y-E 99 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH------HHhh-----------------hHHHHHhhhh-C-C
Confidence 357899999999999999999887 32234567775432 1111 0122333331 2 2
Q ss_pred EEEecCcccc---ccccc-cccCCCC-CCCCeEEEEecCChHH---------HhhccCCceEEccCCCHHHHHHHHHHhc
Q 002037 173 LIILDDLWGK---LDLAV-VGIPYGE-EHKGCKIILTSRFKEV---------CDEMESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 173 LlvlDdv~~~---~~~~~-l~~~~~~-~~~gs~iivTtR~~~v---------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
++|+||+... ..|.. +..-+.. ...|..||+|++...- ...+.....+++++++.++-.+++++++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6889999743 23332 2222211 2346678888875422 2233334678999999999999998665
Q ss_pred CCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 239 GLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
... .-.-.+++..-|++.+.|-.-++..+
T Consensus 180 ~~~-~~~l~~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 180 SRR-GLHLTDEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHc-CCCCCHHHHHHHHHhcCCCHHHHHHH
Confidence 421 12223567777888777765444433
No 108
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.10 E-value=1.1e-05 Score=86.71 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=61.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCC--CCHHHHHHHHHHHhhhcccc-chH--HHH----HHHHHH
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT--PDVKRVQDEIARFLNTELEG-DVE--VLR----AAFLSE 164 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~--~~~~~~~~~i~~~l~~~~~~-~~~--~~~----~~~l~~ 164 (977)
.++|+|++|+|||||++.+++. .++|+..+||.+.+. .++.++++.|...+-...-+ ... ... .+....
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~ 249 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKR 249 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHH
Confidence 6899999999999999999998 567999999999866 78999999985432211111 111 111 122223
Q ss_pred HHHccceEEEEecCcccc
Q 002037 165 RLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 165 ~l~~~~~~LlvlDdv~~~ 182 (977)
....+++++|++|++...
T Consensus 250 ~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 250 LVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHcCCCeEEEEEChhHH
Confidence 334689999999998654
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=5e-05 Score=88.09 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=109.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c-C-CCC--EEEEEEeCCCCCHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E-I-PFD--KVIFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~-~-~f~--~~~wv~~~~~~~~~~~~~~ 141 (977)
+..+..++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++. . . ... +..+ .........+.
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~----~~cg~c~~C~~ 94 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTI----DLCGVGEHCQA 94 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcc----ccCcccHHHHH
Confidence 3566788999999999999887765 2347899999999999999999987 1 1 111 0000 00011112222
Q ss_pred HHHHhhhcc-----ccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEE-ecCChH
Q 002037 142 IARFLNTEL-----EGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIIL-TSRFKE 209 (977)
Q Consensus 142 i~~~l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv-TtR~~~ 209 (977)
|...-.... ......+....+.+... .+++-++|+|+++... ....+...+-.....+.+|+ ||....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 222111000 00000111122222221 2456689999997653 23444433333334555555 444444
Q ss_pred HHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 210 VCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 210 v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
+...+ .....++++.++.++....+.+.+... ...-..+....|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke-gi~i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE-GVEVEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 43222 223578999999999999998876421 1222346788899999998754443
No 110
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.1e-07 Score=91.39 Aligned_cols=58 Identities=29% Similarity=0.206 Sum_probs=36.0
Q ss_pred CccEEEccCCCCc--ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 512 ELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 512 ~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
.||+|||+++.|+ .+..-+..+.+|+.|.+.+++....+-.. +.+-.+|+.|++++|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeecccccc
Confidence 3677777776665 34334556667777777776655544444 5666677777776654
No 111
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.07 E-value=9.7e-06 Score=87.54 Aligned_cols=136 Identities=18% Similarity=0.280 Sum_probs=87.0
Q ss_pred ccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhh
Q 002037 736 LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVE 815 (977)
Q Consensus 736 ~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~ 815 (977)
++++..|.+++| .++.++ ...++|+.|.+.+|.+|+.++. .+ .++|++|.+++|..+..+
T Consensus 51 ~~~l~~L~Is~c-~L~sLP------~LP~sLtsL~Lsnc~nLtsLP~-~L---P~nLe~L~Ls~Cs~L~sL--------- 110 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP------VLPNELTEITIENCNNLTTLPG-SI---PEGLEKLTVCHCPEISGL--------- 110 (426)
T ss_pred hcCCCEEEeCCC-CCcccC------CCCCCCcEEEccCCCCcccCCc-hh---hhhhhheEccCccccccc---------
Confidence 678889999988 677653 1234699999999999877632 11 368899999998766543
Q ss_pred hccccccccCCCCCCCcCCCccEEEecc--ccCcceecccccccccccccEEEEecccccceeeeccccccccccccccc
Q 002037 816 QGAAQERNVSSAPQPMFFPNLKKLLIGK--CNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLP 893 (977)
Q Consensus 816 ~~~~~~~~l~~l~~~~~~~~L~~L~l~~--c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~ 893 (977)
+++|++|+|.. |..+..++ ++|+.|.+.++...... .......+
T Consensus 111 -----------------P~sLe~L~L~~n~~~~L~~LP--------ssLk~L~I~~~n~~~~~---------~lp~~LPs 156 (426)
T PRK15386 111 -----------------PESVRSLEIKGSATDSIKNVP--------NGLTSLSINSYNPENQA---------RIDNLISP 156 (426)
T ss_pred -----------------ccccceEEeCCCCCcccccCc--------chHhheecccccccccc---------ccccccCC
Confidence 46788888753 22233321 46777877543311110 01112347
Q ss_pred ccceeeccccccccccccCccccccCCCccEEEeccCC
Q 002037 894 KLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCP 931 (977)
Q Consensus 894 ~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~ 931 (977)
+|+.|.+.+|..+. +|.. ++ .+|++|++..+.
T Consensus 157 SLk~L~Is~c~~i~-LP~~-LP----~SLk~L~ls~n~ 188 (426)
T PRK15386 157 SLKTLSLTGCSNII-LPEK-LP----ESLQSITLHIEQ 188 (426)
T ss_pred cccEEEecCCCccc-Cccc-cc----ccCcEEEecccc
Confidence 89999999998664 3322 22 589999997753
No 112
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.4e-06 Score=85.17 Aligned_cols=98 Identities=18% Similarity=0.307 Sum_probs=54.3
Q ss_pred cEEEccCCcCCCCCC--Cc-ccCCCCCeEecCCCCCCC----CccccCCCCccEEEccCCCCc----ccCccccCCCCCC
Q 002037 469 KNLDLSSTNISSLAP--SL-PCLEKLRSLHLENTHLND----ASLIREFGELEVLILKGSRIV----ELPNGIGTVSNLK 537 (977)
Q Consensus 469 r~L~l~~~~~~~lp~--~~-~~l~~L~~L~L~~~~l~~----~~~i~~l~~L~~L~l~~~~l~----~lp~~i~~l~~L~ 537 (977)
..|.+.++.+...-. .+ ..+++++.|||.+|.+++ ...+.++++|++|+++.|.+. .+| ..+.+|+
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~ 124 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLR 124 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccccceE
Confidence 344445554443222 22 245567777777777666 234456777777777776543 333 2445777
Q ss_pred EEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 538 LLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 538 ~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
.|-|.++.....-....+..++.+++|+++.+
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence 77777765433222333556666667666543
No 113
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.06 E-value=4.5e-05 Score=92.29 Aligned_cols=155 Identities=15% Similarity=0.225 Sum_probs=88.0
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC----C-CEEEEEEeCCCCCHHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP----F-DKVIFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~----f-~~~~wv~~~~~~~~~~~~~~ 141 (977)
.+.+++||+++++++++.|.... ..-+.++|++|+|||++|+.+++. ... + +..+|. + +...+..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a- 251 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA- 251 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh-
Confidence 44578999999999999887665 446789999999999999999987 211 1 334442 1 1111110
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc----------cccccccCCCCCCCCeEEEEecCChHHH
Q 002037 142 IARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------DLAVVGIPYGEEHKGCKIILTSRFKEVC 211 (977)
Q Consensus 142 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTtR~~~v~ 211 (977)
+.... .........+.+.+...++.+|++|++.... +...+..+....+. -++|-+|...+..
T Consensus 252 -----~~~~~-g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~-i~~IgaTt~~e~~ 324 (731)
T TIGR02639 252 -----GTKYR-GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK-LRCIGSTTYEEYK 324 (731)
T ss_pred -----hcccc-chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-eEEEEecCHHHHH
Confidence 00000 1112233334444433568999999987431 11112222222222 2344444432211
Q ss_pred h------hc-cCCceEEccCCCHHHHHHHHHHhc
Q 002037 212 D------EM-ESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 212 ~------~~-~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
. .+ ..-..+++++++.++..+++.+..
T Consensus 325 ~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 325 NHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 0 01 112478999999999999998655
No 114
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00011 Score=83.54 Aligned_cols=182 Identities=13% Similarity=0.095 Sum_probs=107.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCC-C-------------------EEE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-D-------------------KVI 125 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f-~-------------------~~~ 125 (977)
..+..++|.+...+.+...+..+. -.+++.++|+.|+||||+|+.+++. .... + .++
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 456678899999999998887665 2346789999999999999988876 1110 0 122
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEE
Q 002037 126 FVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIIL 203 (977)
Q Consensus 126 wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv 203 (977)
.++.+....+..+.. +...... .-..+++-++|+|+++... ...++...+-.....+++|+
T Consensus 90 eldaas~~gId~IRe-lie~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 90 EMDAASNRGIDDIRE-LIEQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred EeccccccCHHHHHH-HHHHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 222222112222211 1111100 0001456789999997652 23334333333344566666
Q ss_pred ecCCh-HHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 204 TSRFK-EVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 204 TtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
+|.+. .+... ......+++.+++.++..+.+.+.+.... ..-.++.+..|++.++|-+--+...
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-VSYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 66553 22111 11235889999999999998887664221 2233567889999999988444433
No 115
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.05 E-value=5.6e-05 Score=82.50 Aligned_cols=149 Identities=18% Similarity=0.211 Sum_probs=86.8
Q ss_pred CCCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
.+..+..++|.++..+.+..++..+. -..++.++|+.|+||||+|+.+++. ... ...++.+. .....+...+..
T Consensus 16 rP~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~~~~-~~~~~i~~~l~~ 90 (316)
T PHA02544 16 RPSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVNGSD-CRIDFVRNRLTR 90 (316)
T ss_pred CCCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEeccCc-ccHHHHHHHHHH
Confidence 34556678899999999999887654 2457777999999999999999987 322 23444444 222211111111
Q ss_pred HhhhccccchHHHHHHHHHHHH-HccceEEEEecCccccc--c-ccccccCCCCCCCCeEEEEecCChHH-Hhhc-cCCc
Q 002037 145 FLNTELEGDVEVLRAAFLSERL-KRQKRVLIILDDLWGKL--D-LAVVGIPYGEEHKGCKIILTSRFKEV-CDEM-ESTN 218 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlvlDdv~~~~--~-~~~l~~~~~~~~~gs~iivTtR~~~v-~~~~-~~~~ 218 (977)
.. ... ..+.+-++|+||++... + ...+...+.....+.++|+||..... ...+ ....
T Consensus 91 ~~-----------------~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~ 153 (316)
T PHA02544 91 FA-----------------STVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCR 153 (316)
T ss_pred HH-----------------HhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhce
Confidence 10 000 01345688999997551 1 12222222233456788888875432 1111 1123
Q ss_pred eEEccCCCHHHHHHHHHH
Q 002037 219 YVQVEELTDEDRLILFKK 236 (977)
Q Consensus 219 ~~~l~~L~~~~~~~lf~~ 236 (977)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 677777788887766654
No 116
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.03 E-value=1.6e-05 Score=79.36 Aligned_cols=45 Identities=27% Similarity=0.359 Sum_probs=32.0
Q ss_pred ccchHHHHHHHHHHhhc-CCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLKD-NSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
|+||+++++++...+.. .....+.+.|+|.+|+|||+|++.++..
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~ 47 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDR 47 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 78999999999999842 2234689999999999999999999988
No 117
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.00013 Score=85.06 Aligned_cols=180 Identities=14% Similarity=0.141 Sum_probs=106.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCC-C----------------EEEEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-D----------------KVIFV 127 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f-~----------------~~~wv 127 (977)
+..+..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++. ..+. + .++++
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dviei 92 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEM 92 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEE
Confidence 3456678899999999999887754 2456789999999999999999877 2111 0 01111
Q ss_pred EeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeE-
Q 002037 128 RVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCK- 200 (977)
Q Consensus 128 ~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~- 200 (977)
.......+. ....+.+... .+++-++|+|+++.. ..+.++...+-.......
T Consensus 93 daasn~~vd---------------------~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tif 151 (725)
T PRK07133 93 DAASNNGVD---------------------EIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIF 151 (725)
T ss_pred eccccCCHH---------------------HHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEE
Confidence 111111111 1122222221 256678999998755 234444333322233444
Q ss_pred EEEecCChHHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh-HHHHHH
Q 002037 201 IILTSRFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVIIG 269 (977)
Q Consensus 201 iivTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 269 (977)
|++||+...+... ......+++.+++.++..+.+...+.... .....+.+..|++.++|-+- |+..+-
T Consensus 152 ILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 152 ILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-ISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred EEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 4555555444332 22235899999999999988887654211 12234567889999999664 444433
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.03 E-value=9.6e-05 Score=85.25 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=108.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c--CCCC---------------------
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E--IPFD--------------------- 122 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~--~~f~--------------------- 122 (977)
+..+..++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++. . ...+
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~ 87 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSI 87 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCc
Confidence 3456678899999999999988765 2346789999999999999999987 1 1110
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCC
Q 002037 123 KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEH 196 (977)
Q Consensus 123 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~ 196 (977)
.++.++.+....+.. ...+.+... .+++-++|+|+++.. .....+...+....
T Consensus 88 dvieidaas~~gvd~---------------------iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp 146 (584)
T PRK14952 88 DVVELDAASHGGVDD---------------------TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPP 146 (584)
T ss_pred eEEEeccccccCHHH---------------------HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCC
Confidence 112222211111111 111221111 245668899998754 23334433333333
Q ss_pred CCeEEE-EecCChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh-HHHHHHHHh
Q 002037 197 KGCKII-LTSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVIIGTAL 272 (977)
Q Consensus 197 ~gs~ii-vTtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~~l 272 (977)
....+| +||....+...+ .....+++.+++.++..+.+.+.+.... ..-..+....|++..+|-+- |+..+-.++
T Consensus 147 ~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 147 EHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-VVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred CCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445544 555545443322 2236899999999999988887664221 22234567888999999774 444444433
No 119
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00011 Score=85.39 Aligned_cols=195 Identities=12% Similarity=0.109 Sum_probs=106.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--c-CCCCEEEEEE-eCCCCCHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVR-VTQTPDVKRVQDEI 142 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f~~~~wv~-~~~~~~~~~~~~~i 142 (977)
+..+..++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++. . ..++...|.. +..........+.+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 3456678899999999988887654 2346889999999999999999987 2 2121111111 00111111222222
Q ss_pred HHHhhhc---cc--cchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEE-EecCChHH
Q 002037 143 ARFLNTE---LE--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKII-LTSRFKEV 210 (977)
Q Consensus 143 ~~~l~~~---~~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ii-vTtR~~~v 210 (977)
...-..+ .+ .....+....+.+.+. .+++-++|+|+++... ....+...+......+.+| +|++...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 00 0000111222222221 2456688999987653 2344443333333445554 45444444
Q ss_pred Hhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh
Q 002037 211 CDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 263 (977)
Q Consensus 211 ~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 263 (977)
... ......+++.+++.++....+.+.+... ...-..+.+..|++.++|..-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~e-gi~I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAE-GIQIDADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHhCCCHH
Confidence 332 2234689999999999888887765411 112235678889999999553
No 120
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.01 E-value=0.00011 Score=81.71 Aligned_cols=171 Identities=19% Similarity=0.205 Sum_probs=94.7
Q ss_pred cccchHHHHHHHHHHhhc---C--------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHH
Q 002037 72 PLKSALEVIKSVMKLLKD---N--------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~ 139 (977)
.+.|+++.++++.+.+.. . -...+-|.++|++|+|||++|+++++. ...| +.++. ..+
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~-----i~v~~----~~l- 201 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF-----IRVVG----SEL- 201 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE-----EEeeh----HHH-
Confidence 356888888888776521 1 122567999999999999999999998 4332 22221 111
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc------------c----ccccccCCC--CCCCCeEE
Q 002037 140 DEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL------------D----LAVVGIPYG--EEHKGCKI 201 (977)
Q Consensus 140 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~--~~~~gs~i 201 (977)
.... .+.. ......+.+......+.+|+|||++... . +..+...+. ....+.+|
T Consensus 202 ---~~~~----~g~~-~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 202 ---VQKF----IGEG-ARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred ---hHhh----ccch-HHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 1100 0011 1112222222233567899999997531 0 011111111 11235678
Q ss_pred EEecCChHHHh-h-c---cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 202 ILTSRFKEVCD-E-M---ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 202 ivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
|.||...+... . . .-+..+++++.+.++..++|+.++......++ .....+++.+.|.-
T Consensus 274 I~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~--~~~~~la~~t~g~s 337 (389)
T PRK03992 274 IAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD--VDLEELAELTEGAS 337 (389)
T ss_pred EEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc--CCHHHHHHHcCCCC
Confidence 88887654321 1 1 22457999999999999999988753221111 11455666676643
No 121
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.00 E-value=7.5e-05 Score=90.95 Aligned_cols=178 Identities=15% Similarity=0.169 Sum_probs=99.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCC------CCEEEE-EEeCCCCCHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP------FDKVIF-VRVTQTPDVKRVQ 139 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~------f~~~~w-v~~~~~~~~~~~~ 139 (977)
..+.+++||++++.++++.|.... ..-+.++|.+|+||||+|+.++.+ ... .+..+| ++++.-.....
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~-- 259 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS-- 259 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc--
Confidence 345578999999999999887765 456779999999999999999987 211 123333 33322100000
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHH-ccceEEEEecCccccc-------ccc--ccccCCCCCCCCeEEEEecCChH
Q 002037 140 DEIARFLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL-------DLA--VVGIPYGEEHKGCKIILTSRFKE 209 (977)
Q Consensus 140 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~-------~~~--~l~~~~~~~~~gs~iivTtR~~~ 209 (977)
..+ .-......+.+... .+++.+|++|++.... ..+ .+..+....+ .-++|-||...+
T Consensus 260 ----------~~g-e~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~~e 327 (852)
T TIGR03345 260 ----------VKG-EFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTWAE 327 (852)
T ss_pred ----------cch-HHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCHHH
Confidence 000 01112222222222 3578999999986542 111 1222222222 245555555432
Q ss_pred HHhh-------ccCCceEEccCCCHHHHHHHHHHhcC---CCCCChhhHHHHHHHHHHhCCC
Q 002037 210 VCDE-------MESTNYVQVEELTDEDRLILFKKKAG---LPEGTKAFDRAAEEVVRQCGKL 261 (977)
Q Consensus 210 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~i~~~~~gl 261 (977)
.... ...-..+.+++++.++..+++..... ....-.-.++....+++.+.+.
T Consensus 328 ~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 328 YKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 2111 11225799999999999999754442 1111222355667777777553
No 122
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00014 Score=80.96 Aligned_cols=177 Identities=12% Similarity=0.138 Sum_probs=101.9
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cC--------CCCE-EEEEEeCCCCCHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI--------PFDK-VIFVRVTQTPDVKR 137 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~--------~f~~-~~wv~~~~~~~~~~ 137 (977)
..+..++|.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++. .. .|.. ++-++.....++..
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 345567899999999999887654 2458889999999999999999887 21 1211 11121111111112
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEec-CChHHHhh-
Q 002037 138 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTS-RFKEVCDE- 213 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt-R~~~v~~~- 213 (977)
+ +++.+.+... . . .+++-++|+|+++... .+..+...+......+.+|++| +...+...
T Consensus 93 i-~~l~~~~~~~--------------p-~-~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l 155 (367)
T PRK14970 93 I-RNLIDQVRIP--------------P-Q-TGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTI 155 (367)
T ss_pred H-HHHHHHHhhc--------------c-c-cCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHH
Confidence 1 1222211100 0 0 1455689999987542 2343432222223345555555 33333221
Q ss_pred ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh
Q 002037 214 MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 263 (977)
Q Consensus 214 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 263 (977)
......+++++++.++....+.+.+.... -.-..+.+..+++.++|-+-
T Consensus 156 ~sr~~~v~~~~~~~~~l~~~l~~~~~~~g-~~i~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 156 LSRCQIFDFKRITIKDIKEHLAGIAVKEG-IKFEDDALHIIAQKADGALR 204 (367)
T ss_pred HhcceeEecCCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhCCCCHH
Confidence 12235789999999999988887664211 12234678888889998654
No 123
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.96 E-value=6.9e-05 Score=83.31 Aligned_cols=153 Identities=14% Similarity=0.218 Sum_probs=86.4
Q ss_pred CcccccchHHHHHHHHHHhhc---C--------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKD---N--------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~ 136 (977)
.+..+.|.++.++++.+.+.- . -...+-+.++|++|+|||++|+++++. ...| +.+... +
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f-----i~V~~s-e-- 252 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF-----LRVVGS-E-- 252 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EEEecc-h--
Confidence 344556777777777665531 1 012457889999999999999999998 5444 222111 0
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCC--CCCCC
Q 002037 137 RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EEHKG 198 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~g 198 (977)
+... ..+ .. ......+.+....+.+.+|+||+++.... +..+...+. ....+
T Consensus 253 -L~~k---~~G-----e~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 -LIQK---YLG-----DG-PKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred -hhhh---hcc-----hH-HHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1100 010 01 11122222222346788999999864310 001111111 11235
Q ss_pred eEEEEecCChHHHhh-c----cCCceEEccCCCHHHHHHHHHHhcC
Q 002037 199 CKIILTSRFKEVCDE-M----ESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 199 s~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
.+||.||...+.... + ..+..++++..+.++..++|..++.
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888876655322 1 2235789999999999999998765
No 124
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00012 Score=87.93 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=105.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c--CCCC---------------------
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E--IPFD--------------------- 122 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~--~~f~--------------------- 122 (977)
...|..++|.+..++.|..++..+. -.+.+.++|+.|+||||+|+.+++. . ....
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~ 89 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSL 89 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCC
Confidence 3456678899999999999988765 2346899999999999999999887 1 1110
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHH----HccceEEEEecCcccc--ccccccccCCCCCC
Q 002037 123 KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERL----KRQKRVLIILDDLWGK--LDLAVVGIPYGEEH 196 (977)
Q Consensus 123 ~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l----~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~ 196 (977)
.+++++......+..+ ..+++.. ..+++-++|||+++.. .....|...+....
T Consensus 90 dv~eidaas~~~Vd~i---------------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP 148 (824)
T PRK07764 90 DVTEIDAASHGGVDDA---------------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPP 148 (824)
T ss_pred cEEEecccccCCHHHH---------------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCC
Confidence 1122222111111111 1121111 1245668889999865 23334443443334
Q ss_pred CCeEEEEec-CChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 197 KGCKIILTS-RFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 197 ~gs~iivTt-R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
..+.+|++| ....+...+ .....|++..++.++..+.+.+.+.... ..-..+....|++.++|-+..
T Consensus 149 ~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 149 EHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRD 217 (824)
T ss_pred CCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 455555544 444443322 2236899999999999988887664211 222345667889999997743
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00028 Score=80.32 Aligned_cols=180 Identities=14% Similarity=0.131 Sum_probs=105.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cC--C-------------------CCEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI--P-------------------FDKV 124 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~--~-------------------f~~~ 124 (977)
+..+..++|.+...+.+.+++..+. -.+.+.++|+.|+||||+|+.++.. .. . |...
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 3456678899999999999987754 2446778999999999999998876 11 0 1112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCC
Q 002037 125 IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKG 198 (977)
Q Consensus 125 ~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~g 198 (977)
++++.+....+.. ...+.+... .+++-++|+|+++... ....+...+....+.
T Consensus 91 ~eidaas~~gvd~---------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~ 149 (486)
T PRK14953 91 IEIDAASNRGIDD---------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPR 149 (486)
T ss_pred EEEeCccCCCHHH---------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCC
Confidence 2222221111111 111222111 2567799999987552 233343333332334
Q ss_pred eEEEE-ecCChHHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHH
Q 002037 199 CKIIL-TSRFKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 199 s~iiv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 269 (977)
..+|+ ||+...+... ......+++.+++.++....+.+++.... ..-..+.+..|++.++|.+..+....
T Consensus 150 ~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 150 TIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred eEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 44544 4444333322 12235789999999999988887664211 22334667888899999765444443
No 126
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00019 Score=84.30 Aligned_cols=195 Identities=14% Similarity=0.112 Sum_probs=109.0
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFL 146 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 146 (977)
..+..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++. ....... -..........+.|....
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~----~~~~c~~c~~c~~i~~~~ 87 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP----KGRPCGTCEMCRAIAEGS 87 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC----CCCCCccCHHHHHHhcCC
Confidence 445578899999999988887654 2356789999999999999999877 2110000 000111122333333221
Q ss_pred hhcc---c--cchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCC-hHHHhhc
Q 002037 147 NTEL---E--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF-KEVCDEM 214 (977)
Q Consensus 147 ~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~ 214 (977)
.... . .....+....+.+.+. .+++-++|+|+++.. ...+.+...+........+|++|.+ ..+...+
T Consensus 88 ~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI 167 (585)
T PRK14950 88 AVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATI 167 (585)
T ss_pred CCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHH
Confidence 1110 0 0001111122222221 246778999999755 2344443333333345666665543 3333221
Q ss_pred -cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 215 -ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 215 -~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
.....++++.++.++....+.+.+.... ..-..+.+..|++.++|.+..+...
T Consensus 168 ~SR~~~i~f~~l~~~el~~~L~~~a~~eg-l~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 168 LSRCQRFDFHRHSVADMAAHLRKIAAAEG-INLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HhccceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2235788999999999988887765211 1223467889999999988654443
No 127
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=2.3e-05 Score=79.26 Aligned_cols=187 Identities=19% Similarity=0.186 Sum_probs=116.5
Q ss_pred CCCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEE-EEEEeCCCCCHHHHHHH
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKV-IFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~-~wv~~~~~~~~~~~~~~ 141 (977)
.+..+..+.|.+..+.-+.+.+.... ......+|++|.|||+-|+.++.. .+.|.+. .=.++|....+.-+-..
T Consensus 31 rPkt~de~~gQe~vV~~L~~a~~~~~--lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~K 108 (346)
T KOG0989|consen 31 RPKTFDELAGQEHVVQVLKNALLRRI--LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREK 108 (346)
T ss_pred CCCcHHhhcchHHHHHHHHHHHhhcC--CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhh
Confidence 34556778899999999999888755 789999999999999999999988 4666544 33566654433211111
Q ss_pred HHHHhhhccccchHHHHHHHHHHHH-----Hccce-EEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChHH-Hh
Q 002037 142 IARFLNTELEGDVEVLRAAFLSERL-----KRQKR-VLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKEV-CD 212 (977)
Q Consensus 142 i~~~l~~~~~~~~~~~~~~~l~~~l-----~~~~~-~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v-~~ 212 (977)
+-. ...+.... ..-++ -.+|||+++.. +.|.++..........++.|+.+..-+. ..
T Consensus 109 ik~--------------fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 109 IKN--------------FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hcC--------------HHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 100 00000000 01233 47889999876 5577665555444555665554443322 11
Q ss_pred hc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCC-hhHHHHHH
Q 002037 213 EM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL-PNAIVIIG 269 (977)
Q Consensus 213 ~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~ 269 (977)
.+ ..-.-|..++|.+++...-+...+. .+..+-..++.+.|++.++|- --|+.++-
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~-~E~v~~d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIAS-KEGVDIDDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 11 1114588999999999998888875 223344566789999999983 34444433
No 128
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.92 E-value=0.0002 Score=80.92 Aligned_cols=181 Identities=14% Similarity=0.157 Sum_probs=104.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC----------------------CCCE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI----------------------PFDK 123 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~----------------------~f~~ 123 (977)
..+..++|.+..++.+.+++..+. -.+.+.++|+.|+||||+|+.+++. .. +++
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 445678899999999999887655 1357889999999999999999876 11 011
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEE
Q 002037 124 VIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKI 201 (977)
Q Consensus 124 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~i 201 (977)
.+++.......+..+ +++.+.+ ...-..+++-++|+|+++... ....+...+........+
T Consensus 92 ~~~i~g~~~~gid~i-r~i~~~l----------------~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGASHRGIEDI-RQINETV----------------LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeeccccCCHHHH-HHHHHHH----------------HhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 111211111111111 1111111 000012567788999987552 233333333333345556
Q ss_pred EEecC-ChHHHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh-hHHHHH
Q 002037 202 ILTSR-FKEVCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVII 268 (977)
Q Consensus 202 ivTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~ 268 (977)
|++|. ...+... ......+++++++.++....+.+.+... ...-.++.+..|++.++|.+ .|+..+
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e-g~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQE-GIETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 65553 3333222 1223578999999999998888766421 12234567888999999966 444443
No 129
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.92 E-value=0.00051 Score=77.52 Aligned_cols=177 Identities=20% Similarity=0.232 Sum_probs=101.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCC--CEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 170 (977)
...+.|+|..|+|||+||+++++. .... ..+++++. ..+...+...+... ....+.+.+. +
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~--------~~~~~~~~~~--~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN--------KMEEFKEKYR--S 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC--------CHHHHHHHHH--h
Confidence 356899999999999999999998 3322 34566643 33344444444321 1122333333 2
Q ss_pred eEEEEecCccccccc----cccccCCCC-CCCCeEEEEecCCh-H--------HHhhccCCceEEccCCCHHHHHHHHHH
Q 002037 171 RVLIILDDLWGKLDL----AVVGIPYGE-EHKGCKIILTSRFK-E--------VCDEMESTNYVQVEELTDEDRLILFKK 236 (977)
Q Consensus 171 ~~LlvlDdv~~~~~~----~~l~~~~~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 236 (977)
.-+|||||++....- +.+...+.. ...|..||+|+... . +...+.....+++++.+.++-.+++.+
T Consensus 200 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~ 279 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQK 279 (405)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHH
Confidence 348899999754211 112111111 12345677777642 2 122233335789999999999999998
Q ss_pred hcCCCCCChhhHHHHHHHHHHhCCChhHHH----HHHHHhc--C--CChhHHHHHHHHH
Q 002037 237 KAGLPEGTKAFDRAAEEVVRQCGKLPNAIV----IIGTALR--H--KPVREWNEAIKRK 287 (977)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~glPLai~----~~~~~l~--~--~~~~~w~~~l~~l 287 (977)
.+... ...-.+++...|++.+.|..-.+. .+..+-. + -+.+..++++...
T Consensus 280 ~~~~~-~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 280 KAEEE-GLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHc-CCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 88632 222336778888888888665333 2222221 2 2455666666543
No 130
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.0002 Score=83.78 Aligned_cols=177 Identities=12% Similarity=0.115 Sum_probs=106.5
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c-----------------------CCCCE
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E-----------------------IPFDK 123 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~-----------------------~~f~~ 123 (977)
..+..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.++.. . .+|+
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n- 91 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN- 91 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-
Confidence 445678899999999999988765 2356889999999999999988876 1 1222
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEE
Q 002037 124 VIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKI 201 (977)
Q Consensus 124 ~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~i 201 (977)
+..++.+....+..+. ++..++... -..+++-++|+|+++... ....+...+......+.+
T Consensus 92 ~~~ld~~~~~~vd~Ir-~li~~~~~~----------------P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tif 154 (614)
T PRK14971 92 IHELDAASNNSVDDIR-NLIEQVRIP----------------PQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIF 154 (614)
T ss_pred eEEecccccCCHHHHH-HHHHHHhhC----------------cccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEE
Confidence 2222222222222221 111111100 002456688999987652 344444443333345555
Q ss_pred EE-ecCChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 202 IL-TSRFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 202 iv-TtR~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
|+ ||+...+...+ .....+++++++.++....+.+.+.... -.-..+.+..|++.++|-.--
T Consensus 155 IL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~ 218 (614)
T PRK14971 155 ILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRD 218 (614)
T ss_pred EEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 54 55544443322 2236799999999999999887764221 222345678899999996643
No 131
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=1.5e-07 Score=104.43 Aligned_cols=171 Identities=21% Similarity=0.273 Sum_probs=109.8
Q ss_pred ccCccEEEeccCCCccCCCCCCC-CCccEEEccCC----------CCCCCChhHHhcCCCccEEEccCCcCCCCCCCccc
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKC-PRLTTLFLQNN----------PFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPC 487 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~-~~L~~L~l~~~----------~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~ 487 (977)
+..+|+|.+.++.+........+ ..|..|...+. ...++.+++ .-..|.+.+.++|.+..+-.++.-
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~--~Wn~L~~a~fsyN~L~~mD~SLql 185 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP--VWNKLATASFSYNRLVLMDESLQL 185 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch--hhhhHhhhhcchhhHHhHHHHHHH
Confidence 67788888888877554332111 22333332221 011111111 124567777888888777778888
Q ss_pred CCCCCeEecCCCCCCCCccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEc
Q 002037 488 LEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYV 566 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l 566 (977)
++.|+.|||++|++.+...+..+++|++|||++|.+..+|.- ...+ +|..|.+++|.. +.+ .+ +.+|.+|+.|++
T Consensus 186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~g-ie~LksL~~LDl 261 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNAL-TTL-RG-IENLKSLYGLDL 261 (1096)
T ss_pred HHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecccHH-Hhh-hh-HHhhhhhhccch
Confidence 888888888888888877888888888888888888888753 2233 388888888864 333 34 788888888888
Q ss_pred cCCcCCccccccccCcCccccccccCCCCcEEEeeecC
Q 002037 567 GNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSN 604 (977)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 604 (977)
+.|.. .....+..|..|..|+.|+|.+|-
T Consensus 262 syNll---------~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 262 SYNLL---------SEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hHhhh---------hcchhhhHHHHHHHHHHHhhcCCc
Confidence 76532 112233445556677777777664
No 132
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3.1e-05 Score=83.76 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=28.1
Q ss_pred CCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcc
Q 002037 681 FTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVL 751 (977)
Q Consensus 681 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~ 751 (977)
+++++.|++++|.+... | . -.++|++|.+.+|..+..++.. -.++|+.|.+.+|..+.
T Consensus 51 ~~~l~~L~Is~c~L~sL-P-~---LP~sLtsL~Lsnc~nLtsLP~~--------LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 51 ARASGRLYIKDCDIESL-P-V---LPNELTEITIENCNNLTTLPGS--------IPEGLEKLTVCHCPEIS 108 (426)
T ss_pred hcCCCEEEeCCCCCccc-C-C---CCCCCcEEEccCCCCcccCCch--------hhhhhhheEccCccccc
Confidence 46677777777744333 1 0 1124555666555554333210 12355555555554443
No 133
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.89 E-value=0.00022 Score=80.60 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=91.4
Q ss_pred CCCCcccccchHHHHHHHHHHhhc-----------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCC-----CCEEEEEE
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKD-----------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP-----FDKVIFVR 128 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~-----f~~~~wv~ 128 (977)
|...+..+.|.+..++++.+.+.- +-...+-+.++|++|+|||++|+++++. ... +....|++
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~ 256 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN 256 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe
Confidence 344455667788888887776531 0112457899999999999999999998 333 22345555
Q ss_pred eCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc---------cc-----cccccCCCC
Q 002037 129 VTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL---------DL-----AVVGIPYGE 194 (977)
Q Consensus 129 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~-----~~l~~~~~~ 194 (977)
+....-......+..+.+ .......+.....+++.+|+||+++... +. ..+...+..
T Consensus 257 v~~~eLl~kyvGete~~i---------r~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 257 IKGPELLNKYVGETERQI---------RLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred ccchhhcccccchHHHHH---------HHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 543211110000000000 0011112222223578999999997431 11 112111111
Q ss_pred --CCCCeEEEEecCChHHHh-h-c---cCCceEEccCCCHHHHHHHHHHhcC
Q 002037 195 --EHKGCKIILTSRFKEVCD-E-M---ESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 195 --~~~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
...+..||.||...+... . . .-+..++++..+.++..++|.++..
T Consensus 328 l~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 328 VESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred cccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 123455666776554421 1 1 2245689999999999999999875
No 134
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.89 E-value=0.00065 Score=77.65 Aligned_cols=177 Identities=20% Similarity=0.218 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCC--CEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 170 (977)
...+.|+|..|+|||+||+++++. ...+ ..+++++.. .+..++...+... ....+.+.+. +
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~--------~~~~~~~~~~--~ 211 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN--------TMEEFKEKYR--S 211 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC--------cHHHHHHHHh--c
Confidence 457899999999999999999999 4333 345666443 3333344333211 1123333443 3
Q ss_pred eEEEEecCcccccc----ccccccCCCC-CCCCeEEEEecCChH---------HHhhccCCceEEccCCCHHHHHHHHHH
Q 002037 171 RVLIILDDLWGKLD----LAVVGIPYGE-EHKGCKIILTSRFKE---------VCDEMESTNYVQVEELTDEDRLILFKK 236 (977)
Q Consensus 171 ~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~lf~~ 236 (977)
.-+|||||++.... .+.+...+.. ...|..||+||.... +...+.....+++++.+.++-.+++.+
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~ 291 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKK 291 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHH
Confidence 45899999965311 1122111110 112445777776532 123344445799999999999999999
Q ss_pred hcCCCCCChhhHHHHHHHHHHhCCChhHH----HHHHHHh--cCC--ChhHHHHHHHHH
Q 002037 237 KAGLPEGTKAFDRAAEEVVRQCGKLPNAI----VIIGTAL--RHK--PVREWNEAIKRK 287 (977)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~glPLai----~~~~~~l--~~~--~~~~w~~~l~~l 287 (977)
++... ...-.+++..-|++.+.|..-.+ ..+..+- .++ +....++++..+
T Consensus 292 ~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 292 KAEEE-GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHc-CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 87521 22334567888888888866533 3333221 122 566677777765
No 135
>PRK10536 hypothetical protein; Provisional
Probab=97.88 E-value=0.00017 Score=72.95 Aligned_cols=56 Identities=20% Similarity=0.297 Sum_probs=43.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEE
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIF 126 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~w 126 (977)
..++.++.+|......++.++.+.+ +|.+.|.+|+|||+||.+++.+ .+.|+.++-
T Consensus 51 ~~~~~~i~p~n~~Q~~~l~al~~~~----lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 51 SRDTSPILARNEAQAHYLKAIESKQ----LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred hcCCccccCCCHHHHHHHHHHhcCC----eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 3445567788888888998887644 9999999999999999998875 444554443
No 136
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00034 Score=81.89 Aligned_cols=195 Identities=14% Similarity=0.064 Sum_probs=107.3
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARF 145 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 145 (977)
..+..++|.++.++.|..++..+. -.+.+.++|+.|+||||+|+.+++. ....+... ..........+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC----CCCCcccHHHHHHhcC
Confidence 445668899999999988887754 1357889999999999999999988 22111100 0111112223333221
Q ss_pred hhhcc-----ccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEE-ecCChHHHhh
Q 002037 146 LNTEL-----EGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIIL-TSRFKEVCDE 213 (977)
Q Consensus 146 l~~~~-----~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iiv-TtR~~~v~~~ 213 (977)
..... ......+....+.+... .+++-++|+|+++... ....+...+........+|+ |+....+...
T Consensus 88 ~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpT 167 (620)
T PRK14948 88 NALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPT 167 (620)
T ss_pred CCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHH
Confidence 11100 00011111222222221 2456688999998652 34444333333233454454 4443333322
Q ss_pred c-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 214 M-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 214 ~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
+ .....+++..++.++....+.+.+.... ..-..+.+..|++.++|.+..+..+
T Consensus 168 IrSRc~~~~f~~l~~~ei~~~L~~ia~keg-i~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 168 IISRCQRFDFRRIPLEAMVQHLSEIAEKES-IEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHhheeEEEecCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 2235788889999998888877664211 1122356889999999987544433
No 137
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.86 E-value=0.00013 Score=89.36 Aligned_cols=154 Identities=17% Similarity=0.235 Sum_probs=88.2
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c-CC----C-CEEEEEEeCCCCCHHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E-IP----F-DKVIFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~-~~----f-~~~~wv~~~~~~~~~~~~~~ 141 (977)
.+.+++||++++++++++|.... ..-+.++|++|+|||++|+.++.. . .. . +..+|. + +...++.
T Consensus 177 ~~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a- 248 (821)
T CHL00095 177 NLDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA- 248 (821)
T ss_pred CCCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc-
Confidence 34568999999999999997655 445679999999999999999887 1 11 1 234552 1 1111110
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc---------cccccccCCCCCCCCeEEEEecCChHHHh
Q 002037 142 IARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL---------DLAVVGIPYGEEHKGCKIILTSRFKEVCD 212 (977)
Q Consensus 142 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 212 (977)
+....+ .-+.....+.+.+...++.+|++|++.... +...+..+....+. -++|.+|...+...
T Consensus 249 -----g~~~~g-e~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~-l~~IgaTt~~ey~~ 321 (821)
T CHL00095 249 -----GTKYRG-EFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE-LQCIGATTLDEYRK 321 (821)
T ss_pred -----cCCCcc-HHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC-cEEEEeCCHHHHHH
Confidence 111111 122233444444444578999999996431 11112222222222 34555554443311
Q ss_pred h-------ccCCceEEccCCCHHHHHHHHHHh
Q 002037 213 E-------MESTNYVQVEELTDEDRLILFKKK 237 (977)
Q Consensus 213 ~-------~~~~~~~~l~~L~~~~~~~lf~~~ 237 (977)
. ......+.++..+.++...++...
T Consensus 322 ~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 322 HIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 1 112246788999999988887653
No 138
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.86 E-value=7.8e-05 Score=78.48 Aligned_cols=128 Identities=13% Similarity=0.206 Sum_probs=67.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c-CC-CCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E-IP-FDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~-~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 170 (977)
..-+.++|++|+||||+|+.+++. . .. -....++.++.. ++.. ...+ ... ..+.+.+....
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~---~~~g-----~~~----~~~~~~~~~a~ 105 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVG---EYIG-----HTA----QKTREVIKKAL 105 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhh---hhcc-----chH----HHHHHHHHhcc
Confidence 557889999999999999999876 1 11 111123333221 1111 0111 111 11122222122
Q ss_pred eEEEEecCccccc----------cccccccCCCCCCCCeEEEEecCChHH----------HhhccCCceEEccCCCHHHH
Q 002037 171 RVLIILDDLWGKL----------DLAVVGIPYGEEHKGCKIILTSRFKEV----------CDEMESTNYVQVEELTDEDR 230 (977)
Q Consensus 171 ~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTtR~~~v----------~~~~~~~~~~~l~~L~~~~~ 230 (977)
.-+|++|+++... ..+.+............+|+++...+. ...+ ...+++++++.++-
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el 183 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEEL 183 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHH
Confidence 3488999997531 122232222222333455666544322 1211 24688999999999
Q ss_pred HHHHHHhcC
Q 002037 231 LILFKKKAG 239 (977)
Q Consensus 231 ~~lf~~~~~ 239 (977)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999988765
No 139
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.85 E-value=0.00034 Score=80.90 Aligned_cols=192 Identities=13% Similarity=0.073 Sum_probs=107.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC-CCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-PFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++|.+..++.+..++..+. -.+.+.++|+.|+||||+|+.+++. .. .... .+...-...+.|.
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~-------~pC~~C~~C~~i~ 83 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP-------MPCGECSSCKSID 83 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC-------CCCccchHHHHHH
Confidence 3456678899999999999987765 2457889999999999999999987 21 1100 0000000111111
Q ss_pred HHhhhc---cccc--hHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCC-hHHH
Q 002037 144 RFLNTE---LEGD--VEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRF-KEVC 211 (977)
Q Consensus 144 ~~l~~~---~~~~--~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~-~~v~ 211 (977)
..-... ..+. ...+....+.+.+. .+++-++|+|+++... .+..+...+........+|++|.+ ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 100000 0000 00111111111111 2566689999987653 344444444333445556555543 3332
Q ss_pred hhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 212 DEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 212 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
..+ .....+++++++.++..+.+.+.+... ...-..+.+..|++.++|-+-.+..
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~e-gi~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLED-QIKYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 222 223568999999999988888776421 1233456778899999997754433
No 140
>PRK06620 hypothetical protein; Validated
Probab=97.85 E-value=0.00016 Score=73.07 Aligned_cols=131 Identities=18% Similarity=0.106 Sum_probs=77.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLI 174 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~Ll 174 (977)
+.+.|+|+.|+|||+|++.+++.... .++. ..+.. . +... ..-++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~----~~~~--~~~~~-------------------~--------~~~~--~~d~l 89 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA----YIIK--DIFFN-------------------E--------EILE--KYNAF 89 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC----EEcc--hhhhc-------------------h--------hHHh--cCCEE
Confidence 57999999999999999998776221 1221 00000 0 0111 23578
Q ss_pred EecCccccccccccccCCC-CCCCCeEEEEecCChH-------HHhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChh
Q 002037 175 ILDDLWGKLDLAVVGIPYG-EEHKGCKIILTSRFKE-------VCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKA 246 (977)
Q Consensus 175 vlDdv~~~~~~~~l~~~~~-~~~~gs~iivTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~ 246 (977)
++||++...+ ..+..-+. -...|..||+|++... +...+....++++++++.++-..++.+.+... .-.-
T Consensus 90 liDdi~~~~~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~-~l~l 167 (214)
T PRK06620 90 IIEDIENWQE-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS-SVTI 167 (214)
T ss_pred EEeccccchH-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc-CCCC
Confidence 8899974322 11111110 0134668999887442 23334444589999999999888888876421 1223
Q ss_pred hHHHHHHHHHHhCCCh
Q 002037 247 FDRAAEEVVRQCGKLP 262 (977)
Q Consensus 247 ~~~~~~~i~~~~~glP 262 (977)
.+++.+-|++.+.|--
T Consensus 168 ~~ev~~~L~~~~~~d~ 183 (214)
T PRK06620 168 SRQIIDFLLVNLPREY 183 (214)
T ss_pred CHHHHHHHHHHccCCH
Confidence 3566777777776644
No 141
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.84 E-value=0.00085 Score=70.25 Aligned_cols=162 Identities=17% Similarity=0.274 Sum_probs=105.4
Q ss_pred cccchHHHHHHHHHHhhcCCCce-eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhh-h
Q 002037 72 PLKSALEVIKSVMKLLKDNSISI-NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLN-T 148 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~-~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~-~ 148 (977)
.+.+|+.++..+...+.+.+... ..|.|+|-+|.|||.+.+++.+. .- ..+|+++-+.++...+...|+.+.+ .
T Consensus 7 ~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n~~ecft~~~lle~IL~~~~~~ 83 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLNCVECFTYAILLEKILNKSQLA 83 (438)
T ss_pred CccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeeehHHhccHHHHHHHHHHHhccC
Confidence 36689999999999887766533 45689999999999999999988 33 3489999999999999999999885 2
Q ss_pred ccccchHHH-------HHHHHHHH--H-HccceEEEEecCccccccccccccCC----C--CCCCCeEEEEecCCh--HH
Q 002037 149 ELEGDVEVL-------RAAFLSER--L-KRQKRVLIILDDLWGKLDLAVVGIPY----G--EEHKGCKIILTSRFK--EV 210 (977)
Q Consensus 149 ~~~~~~~~~-------~~~~l~~~--l-~~~~~~LlvlDdv~~~~~~~~l~~~~----~--~~~~gs~iivTtR~~--~v 210 (977)
..++..... ....+.++ . +.++.++||||+++...|.+++..+. . -..+.. +|+++--. ..
T Consensus 84 d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i-~iils~~~~e~~ 162 (438)
T KOG2543|consen 84 DKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTI-VIILSAPSCEKQ 162 (438)
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCce-EEEEeccccHHH
Confidence 222221111 11112221 1 12468999999999877766542211 0 112233 33333222 11
Q ss_pred -HhhccCC--ceEEccCCCHHHHHHHHHHh
Q 002037 211 -CDEMEST--NYVQVEELTDEDRLILFKKK 237 (977)
Q Consensus 211 -~~~~~~~--~~~~l~~L~~~~~~~lf~~~ 237 (977)
...+++. .++..+.-+.+|..+++.+-
T Consensus 163 y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 163 YLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred hhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 2223443 35677888999999998775
No 142
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.00087 Score=72.93 Aligned_cols=192 Identities=12% Similarity=0.156 Sum_probs=113.8
Q ss_pred cchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCC-----CCHHHHHHHHHHHh
Q 002037 74 KSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT-----PDVKRVQDEIARFL 146 (977)
Q Consensus 74 ~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~-----~~~~~~~~~i~~~l 146 (977)
+.|...-+++.+.+.+.+ ..+.|.|+-.+|||+|...+.+. ...| .++++++..- .+..+.++.++..+
T Consensus 14 i~R~~~e~~~~~~i~~~G---~~~~I~apRq~GKTSll~~l~~~l~~~~~-~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQPG---SYIRIKAPRQMGKTSLLLRLLERLQQQGY-RCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred cCchHHHHHHHHHHhcCC---CEEEEECcccCCHHHHHHHHHHHHHHCCC-EEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 366655666777776633 38999999999999999999888 3444 4567776642 34566666655544
Q ss_pred hhccccc------------hHHHHHHHHHHHH-H-ccceEEEEecCcccccccc----cccc---CC-C-----CCCCC-
Q 002037 147 NTELEGD------------VEVLRAAFLSERL-K-RQKRVLIILDDLWGKLDLA----VVGI---PY-G-----EEHKG- 198 (977)
Q Consensus 147 ~~~~~~~------------~~~~~~~~l~~~l-~-~~~~~LlvlDdv~~~~~~~----~l~~---~~-~-----~~~~g- 198 (977)
.....-. ........+.+.+ . ..++.+|+||+|+...... .+.. .+ . +....
T Consensus 90 ~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L 169 (331)
T PF14516_consen 90 SRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKL 169 (331)
T ss_pred HHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceE
Confidence 3322111 1111122233332 2 2689999999998652211 1110 00 0 00111
Q ss_pred eEEEEecCChHHHhh-----ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhc
Q 002037 199 CKIILTSRFKEVCDE-----MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALR 273 (977)
Q Consensus 199 s~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~ 273 (977)
+-|++.+........ ......++|++++.+|...|..++-.. -.....++|...+||+|.-+..++..+.
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~~~~~~l~~~tgGhP~Lv~~~~~~l~ 244 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQEQLEQLMDWTGGHPYLVQKACYLLV 244 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 122222211111111 122357899999999999999887431 1122389999999999999999999997
Q ss_pred C
Q 002037 274 H 274 (977)
Q Consensus 274 ~ 274 (977)
.
T Consensus 245 ~ 245 (331)
T PF14516_consen 245 E 245 (331)
T ss_pred H
Confidence 4
No 143
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=2.6e-05 Score=73.94 Aligned_cols=83 Identities=28% Similarity=0.412 Sum_probs=56.5
Q ss_pred CccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC--CcccCCCCCeEecCC
Q 002037 421 NCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP--SLPCLEKLRSLHLEN 498 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~~~~l~~L~~L~L~~ 498 (977)
....+++++|.+..++.++.+++|.+|.+.+|.++.+.+..-.-+++|..|.+.+|++..+.+ .+..|+.|++|.+-+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 445667777777777777777777777777777777776665666677777777777665543 455566666666666
Q ss_pred CCCCC
Q 002037 499 THLND 503 (977)
Q Consensus 499 ~~l~~ 503 (977)
|.+..
T Consensus 123 Npv~~ 127 (233)
T KOG1644|consen 123 NPVEH 127 (233)
T ss_pred Cchhc
Confidence 65443
No 144
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.83 E-value=0.0019 Score=69.58 Aligned_cols=191 Identities=14% Similarity=0.174 Sum_probs=118.5
Q ss_pred cccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCCC-C-EEEEEEeCCCCCHHHHHHHHHHHh
Q 002037 72 PLKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF-D-KVIFVRVTQTPDVKRVQDEIARFL 146 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~l 146 (977)
...||+.+++.+.+++... ....+.+-|.|-+|.|||.+...++.+ .... . .++++++..-....+++..|...+
T Consensus 151 ~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~ 230 (529)
T KOG2227|consen 151 TLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSL 230 (529)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHH
Confidence 5779999999999888653 223668999999999999999999988 2222 2 457887777677788888888877
Q ss_pred hhcc-ccchHHHHHHHHHHHHHcc-ceEEEEecCccccc--cccccccCC-CCCCCCeEEEEecCChHH------Hhhc-
Q 002037 147 NTEL-EGDVEVLRAAFLSERLKRQ-KRVLIILDDLWGKL--DLAVVGIPY-GEEHKGCKIILTSRFKEV------CDEM- 214 (977)
Q Consensus 147 ~~~~-~~~~~~~~~~~l~~~l~~~-~~~LlvlDdv~~~~--~~~~l~~~~-~~~~~gs~iivTtR~~~v------~~~~- 214 (977)
.... ......+....+.....+. ..+++|+|+++... .-..+...| .+.-+++|+|+.---..+ ...+
T Consensus 231 ~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~ 310 (529)
T KOG2227|consen 231 LQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLN 310 (529)
T ss_pred HHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhh
Confidence 3222 2222223333333333333 47999999987642 112222222 223456666554321111 1111
Q ss_pred ----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 215 ----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 215 ----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
.....+..+|-+.++..++|+.+.............++.+++++.|.-
T Consensus 311 ~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 311 LDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred hccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 223567889999999999999988644333344445555666665544
No 145
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.82 E-value=0.0015 Score=73.78 Aligned_cols=178 Identities=15% Similarity=0.184 Sum_probs=102.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~ 170 (977)
..-+.|+|..|+|||+||+++++. ..+.+ .++|++. .++..++...+... . .....+.+. .+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~----~----~~~f~~~~~-~~ 194 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG----K----LNEFREKYR-KK 194 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc----c----HHHHHHHHH-hc
Confidence 446999999999999999999998 33333 5677754 34555555544321 1 112233332 24
Q ss_pred eEEEEecCcccccc---c-cccccCCCC-CCCCeEEEEecC-ChHH--------HhhccCCceEEccCCCHHHHHHHHHH
Q 002037 171 RVLIILDDLWGKLD---L-AVVGIPYGE-EHKGCKIILTSR-FKEV--------CDEMESTNYVQVEELTDEDRLILFKK 236 (977)
Q Consensus 171 ~~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~ 236 (977)
.-+|++||++.... . ..+...+.. ...|..||+||. .+.- ...+.....+++++.+.++-.+++++
T Consensus 195 ~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 195 VDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARK 274 (440)
T ss_pred CCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHH
Confidence 55899999974311 1 112111111 123446888874 3322 12233345789999999999999998
Q ss_pred hcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh------cC--CChhHHHHHHHHH
Q 002037 237 KAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL------RH--KPVREWNEAIKRK 287 (977)
Q Consensus 237 ~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l------~~--~~~~~w~~~l~~l 287 (977)
++... ...-.+++...|++.+.|.--.+.-+-..+ .+ .+...-++++..+
T Consensus 275 ~~~~~-~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 275 MLEIE-HGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHhc-CCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 87521 122235678888888887543332222111 12 2556666666654
No 146
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.80 E-value=0.00047 Score=80.14 Aligned_cols=190 Identities=13% Similarity=0.070 Sum_probs=104.4
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
+..+..++|++...+.+.+++..+. -.+.+.++|+.|+||||+|+.+++. ...-. -..+.+.....+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~------~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPP------DGEPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC------CCCCCCccHHHHHHhc
Confidence 3456678899999999999887754 2456788999999999999999876 11100 0001111112222211
Q ss_pred Hhhhcc---c--cchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEE-EecCChHHHh
Q 002037 145 FLNTEL---E--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKII-LTSRFKEVCD 212 (977)
Q Consensus 145 ~l~~~~---~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~ii-vTtR~~~v~~ 212 (977)
....+. + .....+....+.+... .+++-++|+|+++.. ..+..+...+........+| .||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 100000 0 0001111222222221 356778899999755 23444433332223344444 4554443322
Q ss_pred h-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 213 E-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 213 ~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
. ......+++.+++.++....+...+.... ..-..+.+..|++.++|-+..
T Consensus 165 tI~SRc~~~~f~~~~~~ei~~~L~~i~~~eg-i~i~~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 165 TILSRCQRFDFKRISVEDIVERLKYILDKEG-IEYEDEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHhHheEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHH
Confidence 2 12235788999999999888887764211 122345678888888887643
No 147
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.80 E-value=0.00061 Score=73.46 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=86.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--c-CCC-------------------CEEEEEEeCC---CCCHHHHHHHHHHHhhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--E-IPF-------------------DKVIFVRVTQ---TPDVKRVQDEIARFLNT 148 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f-------------------~~~~wv~~~~---~~~~~~~~~~i~~~l~~ 148 (977)
.+.+.++|+.|+||||+|+.++.. . ... .-..|+.-.. ...+++
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~----------- 90 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQ----------- 90 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHH-----------
Confidence 567899999999999999999887 2 111 0122332111 111111
Q ss_pred ccccchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChHH-Hhh-ccCCceE
Q 002037 149 ELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKEV-CDE-MESTNYV 220 (977)
Q Consensus 149 ~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v-~~~-~~~~~~~ 220 (977)
...+.+.+. .+++-++|+|+++.. .....+...+-....++.+|+||.+.+. ... ...-..+
T Consensus 91 ----------iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~ 160 (328)
T PRK05707 91 ----------VRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQ 160 (328)
T ss_pred ----------HHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceee
Confidence 122222221 244455577999865 2233333333333356777777766643 222 2223579
Q ss_pred EccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 221 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 221 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
.+.+++.+++.+.+.+.... ...+.+..++..++|.|+....+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred eCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999876421 12334567789999999755444
No 148
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.78 E-value=0.0001 Score=80.70 Aligned_cols=104 Identities=17% Similarity=0.188 Sum_probs=69.3
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEEEEeCCCCCHHHHHHHHHH-Hhh
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIAR-FLN 147 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~-~l~ 147 (977)
..++.++.++.++..+.... .|.++|++|+|||++|+.+++. ...|+.+.||.++...+..++...+.- ..+
T Consensus 176 d~~i~e~~le~l~~~L~~~~----~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 176 DLFIPETTIETILKRLTIKK----NIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred cccCCHHHHHHHHHHHhcCC----CEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 45667888999999887655 7888999999999999999988 456788999999998887766543311 011
Q ss_pred hccccchHHHHHHHHHHHHH-ccceEEEEecCcccc
Q 002037 148 TELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
.... .......+..... ..+++++|+|++...
T Consensus 252 y~~~---~G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FRRK---DGIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eEec---CchHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 0000 0011111111111 247899999998654
No 149
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=3.5e-06 Score=95.39 Aligned_cols=120 Identities=29% Similarity=0.387 Sum_probs=63.8
Q ss_pred EEEeccCCCcc-CCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCC
Q 002037 424 KLSLMDGNVTA-LPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLN 502 (977)
Q Consensus 424 ~l~l~~~~~~~-l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~ 502 (977)
.+++..+.+.. ......+.+|..|++.+|.+..+... +..+.+|++|++++|.|..+ ..+..+..|+.|++.+|.+.
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~ 153 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLIS 153 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchhhcccc-hhhhhcchheeccccccccc-cchhhccchhhheeccCcch
Confidence 33344444443 22234455566666666655554331 34456666666666665554 23344445666666666665
Q ss_pred CCccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCC
Q 002037 503 DASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNL 545 (977)
Q Consensus 503 ~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 545 (977)
....+..+..|+.+++++|.+..+... ...+.+|+.+++.+|.
T Consensus 154 ~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 154 DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 555555566666666666665555443 3555556666666554
No 150
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.77 E-value=0.00039 Score=73.72 Aligned_cols=128 Identities=15% Similarity=0.131 Sum_probs=68.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh--c-CCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~--~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
-+.++|++|+||||+|+.++.. . ......-|+.++. .++ ...+.. .+.. .+...+.+-..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l----~~~~~g----~~~~----~~~~~~~~a~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDL----VGQYIG----HTAP----KTKEILKRAMGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHH----hHhhcc----cchH----HHHHHHHHccCc
Confidence 5889999999999999888776 1 1111112444442 111 111111 1111 111222222336
Q ss_pred EEEecCcccc-----------ccccccccCCCCCCCCeEEEEecCChHHHhhc--------cCCceEEccCCCHHHHHHH
Q 002037 173 LIILDDLWGK-----------LDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM--------ESTNYVQVEELTDEDRLIL 233 (977)
Q Consensus 173 LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 233 (977)
+|+||++... .....+...+.....+.+||+++......... .....+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999632 11122222222333456777776543221111 1135789999999999999
Q ss_pred HHHhcC
Q 002037 234 FKKKAG 239 (977)
Q Consensus 234 f~~~~~ 239 (977)
+...+.
T Consensus 204 ~~~~l~ 209 (284)
T TIGR02880 204 AGLMLK 209 (284)
T ss_pred HHHHHH
Confidence 888764
No 151
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.0018 Score=74.23 Aligned_cols=151 Identities=18% Similarity=0.236 Sum_probs=90.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCC--CEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccce
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 171 (977)
..+.|+|..|+|||.|++++++. ...+ ..+++++. .++..++...+... ....+++++. +-
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~--------~~~~f~~~y~--~~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG--------KGDSFRRRYR--EM 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc--------cHHHHHHHhh--cC
Confidence 45899999999999999999998 3322 34566643 33444443333211 1122333333 23
Q ss_pred EEEEecCcccccc---c-cccccCCCC-CCCCeEEEEecCCh---------HHHhhccCCceEEccCCCHHHHHHHHHHh
Q 002037 172 VLIILDDLWGKLD---L-AVVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKKK 237 (977)
Q Consensus 172 ~LlvlDdv~~~~~---~-~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 237 (977)
=+|||||+..... + +.+...+.. ...|..|||||+.. .+...+...-.+++++.+.+.-.+++.++
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kk 458 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKK 458 (617)
T ss_pred CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHH
Confidence 5889999975421 1 112111111 12355688888753 23344555678999999999999999988
Q ss_pred cCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 238 AGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 238 ~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
+... ...-.++++.-|++.+.+..
T Consensus 459 a~~r-~l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 459 AVQE-QLNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HHhc-CCCCCHHHHHHHHHhccCCH
Confidence 7622 12233567777777776543
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.74 E-value=0.00067 Score=72.72 Aligned_cols=194 Identities=13% Similarity=0.120 Sum_probs=107.9
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC--------------CCEEEEEEeCCCC
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP--------------FDKVIFVRVTQTP 133 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~--------------f~~~~wv~~~~~~ 133 (977)
+..++|.++.++.+...+..+. -.+...++|+.|+||+++|..+++. ... ..-..|+.-....
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 4567899999999999887765 2368999999999999999998877 211 1122444221000
Q ss_pred CHHHHHHHHHHHhh--hccccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEec
Q 002037 134 DVKRVQDEIARFLN--TELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTS 205 (977)
Q Consensus 134 ~~~~~~~~i~~~l~--~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTt 205 (977)
+...+-..-++..+ .........+....+.+.+. .+++-++|+|+++... ...++...+-...+..-|++|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~ 161 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAP 161 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEEC
Confidence 00000001111111 00001111222334444443 3567789999987652 2223322222222334455555
Q ss_pred CChHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 206 RFKEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 206 R~~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
+...+...+ .....+++.+++.++..+.+.+...... .......++..++|.|..+..+
T Consensus 162 ~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 162 SPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHH
Confidence 444443322 2236899999999999999998743111 1112367889999999665543
No 153
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00042 Score=81.01 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=105.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC-CCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-PFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++|.+...+.+.+++..+. -.+.+.++|+.|+||||+|+.+++. .. ..+. .........+.|.
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 3456678899999999999887765 2356789999999999999999877 21 1100 0000011111111
Q ss_pred HHhhhc---cc--cchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEE-EecCChHHH
Q 002037 144 RFLNTE---LE--GDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKII-LTSRFKEVC 211 (977)
Q Consensus 144 ~~l~~~---~~--~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~ii-vTtR~~~v~ 211 (977)
..-..+ .+ .....+....+.+... .+++-++|+|+++... ....+...+-.......+| +||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 100000 00 0000111122222221 2455688999997652 2333433332323345555 555544443
Q ss_pred hhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh-hHHHHHH
Q 002037 212 DEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIG 269 (977)
Q Consensus 212 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 269 (977)
..+ .....+++++++.++....+...+... ...-..+....|++.++|-. .|+..+-
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~e-gi~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQE-GISISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 322 223578899999999888887765421 12223456788899998855 4444443
No 154
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.72 E-value=4.4e-06 Score=85.64 Aligned_cols=158 Identities=19% Similarity=0.213 Sum_probs=81.4
Q ss_pred CCCccEEEccCCCCCC----CChhHHhcCCCccEEEccCCcCC----CCCC-------CcccCCCCCeEecCCCCCCC--
Q 002037 441 CPRLTTLFLQNNPFAD----IPNAFFEHTREIKNLDLSSTNIS----SLAP-------SLPCLEKLRSLHLENTHLND-- 503 (977)
Q Consensus 441 ~~~L~~L~l~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~----~lp~-------~~~~l~~L~~L~L~~~~l~~-- 503 (977)
+..++.++++||.+.. .....+...+.||..++|+-.-. .+|+ .+-.+++|++|+|+.|.+..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 3445555555555431 11223444555666666554211 2232 23345566666666666543
Q ss_pred C----ccccCCCCccEEEccCCCCcc--------------cCccccCCCCCCEEEcCCCCCCCccChh----hhhcCccc
Q 002037 504 A----SLIREFGELEVLILKGSRIVE--------------LPNGIGTVSNLKLLDLSNNLFLQVIPPN----VISKLSQL 561 (977)
Q Consensus 504 ~----~~i~~l~~L~~L~l~~~~l~~--------------lp~~i~~l~~L~~L~l~~~~~~~~~p~~----~i~~L~~L 561 (977)
+ ..+..+..|++|.|.+|.+.. .-+.++.-++||++...+|+ +...+.. .+...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhcccc
Confidence 2 234456666666666665541 12234556677888777775 3333321 24455677
Q ss_pred cEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCc
Q 002037 562 EELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNT 605 (977)
Q Consensus 562 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 605 (977)
+++.+..+.... .........+..+++|+.|++..|..
T Consensus 188 eevr~~qN~I~~------eG~~al~eal~~~~~LevLdl~DNtf 225 (382)
T KOG1909|consen 188 EEVRLSQNGIRP------EGVTALAEALEHCPHLEVLDLRDNTF 225 (382)
T ss_pred ceEEEecccccC------chhHHHHHHHHhCCcceeeecccchh
Confidence 777665542110 01123345566777777777776653
No 155
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.72 E-value=0.0008 Score=74.49 Aligned_cols=173 Identities=13% Similarity=0.164 Sum_probs=93.9
Q ss_pred cccccchHHHHHHHHHHhhc---C-------C-CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKD---N-------S-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 137 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~---~-------~-~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~ 137 (977)
+..+.|-+..++++.+.+.- . + ...+-|.++|++|+|||++|+++++. ...|- .+.. ..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi-----~i~~----s~ 214 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI-----RVVG----SE 214 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE-----EEeh----HH
Confidence 33456777667666654421 1 0 23568999999999999999999998 44431 1211 11
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc------------c----ccccccCCC--CCCCCe
Q 002037 138 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL------------D----LAVVGIPYG--EEHKGC 199 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~--~~~~gs 199 (977)
+.. ..++ .. ......+........+.+|++|+++... . +..+...+. ....+.
T Consensus 215 l~~---k~~g-----e~-~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 FVQ---KYLG-----EG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred HHH---Hhcc-----hh-HHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 111 0111 11 1112223333334678999999987431 0 011111111 122456
Q ss_pred EEEEecCChHHHhh--c---cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 200 KIILTSRFKEVCDE--M---ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 200 ~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
.||.||...+.... . .-+..++++..+.++..++|+.+.......++ --..++++.+.|.-
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d--vd~~~la~~t~g~s 351 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE--VDLEDFVSRPEKIS 351 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc--cCHHHHHHHcCCCC
Confidence 78888876654211 1 22356899999999988888876642221111 11345666676654
No 156
>CHL00181 cbbX CbbX; Provisional
Probab=97.71 E-value=0.0011 Score=70.34 Aligned_cols=128 Identities=16% Similarity=0.200 Sum_probs=69.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh--cCCC-CEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~--~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+.++|++|+||||+|+.+++. ...+ ...-|+.++. ..+... ..+. ... .....+.....-
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~---~~g~-----~~~----~~~~~l~~a~gg 124 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQ---YIGH-----TAP----KTKEVLKKAMGG 124 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHH---Hhcc-----chH----HHHHHHHHccCC
Confidence 5889999999999999999876 2111 1112444442 111111 1111 111 111222212234
Q ss_pred EEEecCcccc-----------ccccccccCCCCCCCCeEEEEecCChHHHhhc--------cCCceEEccCCCHHHHHHH
Q 002037 173 LIILDDLWGK-----------LDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM--------ESTNYVQVEELTDEDRLIL 233 (977)
Q Consensus 173 LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~l 233 (977)
+|++|++... .....+.........+.+||+++....+.... .....+++++++.+|..++
T Consensus 125 VLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I 204 (287)
T CHL00181 125 VLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQI 204 (287)
T ss_pred EEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHH
Confidence 8999999642 11122222222333456777777644332111 1235789999999999999
Q ss_pred HHHhcC
Q 002037 234 FKKKAG 239 (977)
Q Consensus 234 f~~~~~ 239 (977)
+.+.+.
T Consensus 205 ~~~~l~ 210 (287)
T CHL00181 205 AKIMLE 210 (287)
T ss_pred HHHHHH
Confidence 888764
No 157
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.70 E-value=0.00024 Score=84.81 Aligned_cols=154 Identities=18% Similarity=0.248 Sum_probs=88.5
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC--C---CCEEEEEEeCCCCCHHHHHHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI--P---FDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~--~---f~~~~wv~~~~~~~~~~~~~~i 142 (977)
+.+++||++++.++++.|.... ..-+.++|.+|+|||++|+.++.. .. . .++.+|.. +...++
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~ll--- 254 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSLL--- 254 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHHh---
Confidence 4468899999999999887754 345578999999999999999977 22 1 24445521 111111
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc----------cccccccCCCCCCCCeEEEEecCChHHHh
Q 002037 143 ARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------DLAVVGIPYGEEHKGCKIILTSRFKEVCD 212 (977)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 212 (977)
+ +....+ ........+.+.+.+.++.+|++|++.... +...+..++...+ .-+||-+|...+...
T Consensus 255 a---G~~~~G-e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~E~~~ 329 (758)
T PRK11034 255 A---GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQEFSN 329 (758)
T ss_pred c---ccchhh-hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChHHHHH
Confidence 0 111111 112233334444444567899999997431 1111222222222 234555554433211
Q ss_pred h-------ccCCceEEccCCCHHHHHHHHHHhc
Q 002037 213 E-------MESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 213 ~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
. ...-..+.+++++.++..+++....
T Consensus 330 ~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 330 IFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1 1112479999999999999998654
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.68 E-value=0.00047 Score=84.81 Aligned_cols=154 Identities=16% Similarity=0.191 Sum_probs=86.9
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCC------CCEEEE-EEeCCCCCHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP------FDKVIF-VRVTQTPDVKRVQD 140 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~------f~~~~w-v~~~~~~~~~~~~~ 140 (977)
.+.+++||++++.+++..|.... ..-+.++|.+|+|||++|+.++.+ ... .+..+| ++++ .+..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l~a 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------ALIA 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HHhh
Confidence 44568999999999999987765 446678999999999999999887 221 122333 3221 1110
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHH-ccceEEEEecCcccccc---------ccccccCCCCCCCCeEEEEecCChHH
Q 002037 141 EIARFLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKLD---------LAVVGIPYGEEHKGCKIILTSRFKEV 210 (977)
Q Consensus 141 ~i~~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~---------~~~l~~~~~~~~~gs~iivTtR~~~v 210 (977)
+....+ ........+.+.+. .+++.+|++|++..... ...+..+....+. -++|-+|...+.
T Consensus 243 ------~~~~~g-~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~-i~~IgaTt~~e~ 314 (852)
T TIGR03346 243 ------GAKYRG-EFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE-LHCIGATTLDEY 314 (852)
T ss_pred ------cchhhh-hHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-eEEEEeCcHHHH
Confidence 000011 11122233333332 24689999999975421 1122222222222 344444443332
Q ss_pred Hhh-------ccCCceEEccCCCHHHHHHHHHHhc
Q 002037 211 CDE-------MESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 211 ~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
-.. ...-..+.++..+.++..+++....
T Consensus 315 r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 315 RKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 110 1112468899999999999987654
No 159
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.002 Score=72.65 Aligned_cols=151 Identities=15% Similarity=0.200 Sum_probs=87.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
..-+.|+|+.|+|||+||+++++. ......+++++. ..+...+...+... .....++.+. ..-
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~------~~f~~~~~~~l~~~--------~~~~f~~~~~--~~d 204 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS------ELFTEHLVSAIRSG--------EMQRFRQFYR--NVD 204 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH------HHHHHHHHHHHhcc--------hHHHHHHHcc--cCC
Confidence 356889999999999999999998 333334566642 33444444443211 1122333332 345
Q ss_pred EEEecCcccccc----ccccccCCCC-CCCCeEEEEecCCh---------HHHhhccCCceEEccCCCHHHHHHHHHHhc
Q 002037 173 LIILDDLWGKLD----LAVVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 173 LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
+|++||+..... .+.+...+.. ...|..||+||... .+...+.....+++++++.++-.+++.+++
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~ 284 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKA 284 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHH
Confidence 888999865422 1112111110 11355788888542 122334444688999999999999999887
Q ss_pred CCCCCChhhHHHHHHHHHHhCCC
Q 002037 239 GLPEGTKAFDRAAEEVVRQCGKL 261 (977)
Q Consensus 239 ~~~~~~~~~~~~~~~i~~~~~gl 261 (977)
.... ..-.+++..-|+..+.|.
T Consensus 285 ~~~~-~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 285 EALS-IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHcC-CCCCHHHHHHHHHhcCCC
Confidence 5221 222345666677766643
No 160
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.64 E-value=0.00049 Score=76.55 Aligned_cols=134 Identities=18% Similarity=0.227 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhcccc
Q 002037 75 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTELEG 152 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~ 152 (977)
.|...+.++++.+.... . ++.|.|+-++||||+++.+... .+. .+++...+.. +..++ .+..+.
T Consensus 21 ~~~~~~~~l~~~~~~~~--~-i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l-~d~~~~------- 86 (398)
T COG1373 21 ERRKLLPRLIKKLDLRP--F-IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL-LDLLRA------- 86 (398)
T ss_pred hHHhhhHHHHhhcccCC--c-EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH-HHHHHH-------
Confidence 34455556666555444 2 9999999999999999777666 333 5555443322 11111 111111
Q ss_pred chHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHH-----hhc-cCCceEEccCCC
Q 002037 153 DVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVC-----DEM-ESTNYVQVEELT 226 (977)
Q Consensus 153 ~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~-----~~~-~~~~~~~l~~L~ 226 (977)
+.+.- ..++..++||.|....+|......+.+.++. +|++|+-+.... ... +....+++-||+
T Consensus 87 ---------~~~~~-~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 87 ---------YIELK-EREKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred ---------HHHhh-ccCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 11111 1277899999999999998877777666666 899988877652 211 334578999999
Q ss_pred HHHHHHH
Q 002037 227 DEDRLIL 233 (977)
Q Consensus 227 ~~~~~~l 233 (977)
..|-..+
T Consensus 156 F~Efl~~ 162 (398)
T COG1373 156 FREFLKL 162 (398)
T ss_pred HHHHHhh
Confidence 9987664
No 161
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.64 E-value=0.00065 Score=83.22 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=86.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCC------CCE-EEEEEeCCCCCHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP------FDK-VIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~------f~~-~~wv~~~~~~~~~~~~ 139 (977)
..+.+++||+.++.++++.|.... ..-+.++|.+|+|||++|+.++.. ... .+. +++++++.-..
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~a----- 247 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA----- 247 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhh-----
Confidence 345578999999999999997765 456779999999999999999988 221 122 23333332100
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHH-HccceEEEEecCccccc---------cccccccCCCCCCCCeEEEEecCChH
Q 002037 140 DEIARFLNTELEGDVEVLRAAFLSERL-KRQKRVLIILDDLWGKL---------DLAVVGIPYGEEHKGCKIILTSRFKE 209 (977)
Q Consensus 140 ~~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~ 209 (977)
+....+. .......+.+.+ ..+++.+|++|++.... +...+..+....+ .-++|-||...+
T Consensus 248 -------g~~~~g~-~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~~e 318 (857)
T PRK10865 248 -------GAKYRGE-FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTLDE 318 (857)
T ss_pred -------ccchhhh-hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCCHH
Confidence 0000011 111222222222 23578999999987542 1122222222222 234444444333
Q ss_pred HHhh-------ccCCceEEccCCCHHHHHHHHHHhc
Q 002037 210 VCDE-------MESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 210 v~~~-------~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
.... ...-..+.+...+.++..+++....
T Consensus 319 ~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 319 YRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 2110 0111356677779999999887654
No 162
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.63 E-value=3.5e-05 Score=55.15 Aligned_cols=36 Identities=36% Similarity=0.648 Sum_probs=17.9
Q ss_pred CccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCC
Q 002037 467 EIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLN 502 (977)
Q Consensus 467 ~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~ 502 (977)
+|++|++++|.++.+|+.+++|++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 455555555555555544555555555555555444
No 163
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0027 Score=63.22 Aligned_cols=176 Identities=20% Similarity=0.210 Sum_probs=101.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeC-CCCCHHHHHHHHHHHhhhccccch---HHHHHHHHHHHHHcc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVT-QTPDVKRVQDEIARFLNTELEGDV---EVLRAAFLSERLKRQ 169 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~l~~~l~~~ 169 (977)
.+++.++|.-|.|||.+++++...-.. +.++=|.+. ...+...+...|...+..+..... -......+....+++
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~-d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g 129 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE-DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKG 129 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC-CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhC
Confidence 469999999999999999955444111 222223333 345667777778777765222111 122223444445567
Q ss_pred ce-EEEEecCcccc--ccccccccCCC---CCCCCeEEEEecCCh-------HHHhhc--cCCceEEccCCCHHHHHHHH
Q 002037 170 KR-VLIILDDLWGK--LDLAVVGIPYG---EEHKGCKIILTSRFK-------EVCDEM--ESTNYVQVEELTDEDRLILF 234 (977)
Q Consensus 170 ~~-~LlvlDdv~~~--~~~~~l~~~~~---~~~~gs~iivTtR~~-------~v~~~~--~~~~~~~l~~L~~~~~~~lf 234 (977)
+| ..++.||.... ..++.+..... ....--+|+..-.-+ .+.... .....|++.|++.++...++
T Consensus 130 ~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl 209 (269)
T COG3267 130 KRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYL 209 (269)
T ss_pred CCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHH
Confidence 77 99999998654 22232221110 111111233322211 111111 11123999999999999998
Q ss_pred HHhcCCCC--CChhhHHHHHHHHHHhCCChhHHHHHHH
Q 002037 235 KKKAGLPE--GTKAFDRAAEEVVRQCGKLPNAIVIIGT 270 (977)
Q Consensus 235 ~~~~~~~~--~~~~~~~~~~~i~~~~~glPLai~~~~~ 270 (977)
..+..... .+--.++....|..+..|.|.+|..++.
T Consensus 210 ~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 210 RHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 88776322 2223456788999999999999988775
No 164
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.62 E-value=0.00014 Score=68.72 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=50.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 173 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 173 (977)
..+.|+|++|+||||+|+.++.. ......+++++.+........... ...................+.......+..+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-LIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-hhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 57899999999999999999998 333345666655544332222211 1111111112222223334444444333599
Q ss_pred EEecCcccccc
Q 002037 174 IILDDLWGKLD 184 (977)
Q Consensus 174 lvlDdv~~~~~ 184 (977)
+++|+++....
T Consensus 82 iiiDei~~~~~ 92 (148)
T smart00382 82 LILDEITSLLD 92 (148)
T ss_pred EEEECCcccCC
Confidence 99999987643
No 165
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.57 E-value=8.1e-06 Score=92.42 Aligned_cols=128 Identities=27% Similarity=0.381 Sum_probs=101.7
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEcc
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILK 519 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~ 519 (977)
.+..+..+.+..|.+.... ..+..++.|..|++.+|.+..+...+..+.+|++|++++|.|+....+..+..|+.|+++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~-~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKIL-NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhh-cccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheec
Confidence 3455556667776666522 224678999999999999998877788999999999999999999999999999999999
Q ss_pred CCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 520 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 520 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
+|.|..++. +..+.+|+.+++++|.+...-+.. ...+.+++.+.+.++.
T Consensus 149 ~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 149 GNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred cCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCc
Confidence 999998865 666999999999999854432212 3678888888887753
No 166
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.0022 Score=66.84 Aligned_cols=198 Identities=16% Similarity=0.191 Sum_probs=112.8
Q ss_pred CcccccchHHHHHHHHHHhhc----CC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKD----NS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~----~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~ 136 (977)
.+..+-|-++.++++-+.+.- .+ ...+=|.+||++|.|||-||++|+++ ...| +.|....
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----IrvvgSE--- 220 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVGSE--- 220 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEeccHH---
Confidence 344455667777777665421 10 23678999999999999999999999 5554 3333321
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc----------c------ccccccCCCCC--CCC
Q 002037 137 RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------D------LAVVGIPYGEE--HKG 198 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~------~~~l~~~~~~~--~~g 198 (977)
-+++ .+|.. ......+.+.-+...+..|++|.++... + +-++...+..+ ...
T Consensus 221 lVqK----YiGEG------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 221 LVQK----YIGEG------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred HHHH----Hhccc------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 1111 11110 1122233333345789999999986431 0 11222222222 345
Q ss_pred eEEEEecCChHHH-----hhccCCceEEccCCCHHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHhCCCh----hHHHH
Q 002037 199 CKIILTSRFKEVC-----DEMESTNYVQVEELTDEDRLILFKKKAGL--PEGTKAFDRAAEEVVRQCGKLP----NAIVI 267 (977)
Q Consensus 199 s~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~glP----Lai~~ 267 (977)
-|||..|...++. +.-.-++.++++.-+.+.-.++|+-++.. -.+.-+ .+.+++.+.|.- -|+.+
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGAdlkaict 366 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGADLKAICT 366 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchHHHHHHHH
Confidence 6889888776663 22233467888866777777788776652 122223 355666776654 56777
Q ss_pred HHHHhc---CC---ChhHHHHHHHHHh
Q 002037 268 IGTALR---HK---PVREWNEAIKRKK 288 (977)
Q Consensus 268 ~~~~l~---~~---~~~~w~~~l~~l~ 288 (977)
=|++++ .+ +.+.+..+.++..
T Consensus 367 EAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 367 EAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 777776 22 4455665555543
No 167
>CHL00176 ftsH cell division protein; Validated
Probab=97.52 E-value=0.0011 Score=77.87 Aligned_cols=172 Identities=20% Similarity=0.257 Sum_probs=94.4
Q ss_pred cccccchHHHHHHHHHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~ 141 (977)
+.|.....+++.+++..+.... ...+-|.++|++|+|||++|+++++. ..+| +.++.. .+...
T Consensus 185 v~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~-----i~is~s----~f~~~ 255 (638)
T CHL00176 185 IAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF-----FSISGS----EFVEM 255 (638)
T ss_pred ccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe-----eeccHH----HHHHH
Confidence 3344444455566666554432 12456899999999999999999987 3332 322211 11000
Q ss_pred HHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc------------c----ccccccCCC--CCCCCeEEEE
Q 002037 142 IARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL------------D----LAVVGIPYG--EEHKGCKIIL 203 (977)
Q Consensus 142 i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~------------~----~~~l~~~~~--~~~~gs~iiv 203 (977)
..+ .. ......+.+......+.+|++||++... . +..+...+. ....+-.||.
T Consensus 256 ---~~g-----~~-~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 256 ---FVG-----VG-AARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred ---hhh-----hh-HHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 000 00 1112222223334678999999996431 0 111111111 1234566777
Q ss_pred ecCChHHHhh-c----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCC
Q 002037 204 TSRFKEVCDE-M----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL 261 (977)
Q Consensus 204 TtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 261 (977)
||...+.... + .-+..+.++..+.++-.++++.++.... .........+++.+.|.
T Consensus 327 aTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~--~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 327 ATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK--LSPDVSLELIARRTPGF 387 (638)
T ss_pred ecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc--cchhHHHHHHHhcCCCC
Confidence 7776554221 1 2236788999999999999998875321 11223456777777773
No 168
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.52 E-value=0.00036 Score=64.92 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~ 117 (977)
|.|+|+.|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999998
No 169
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.52 E-value=5.4e-05 Score=89.32 Aligned_cols=145 Identities=20% Similarity=0.284 Sum_probs=96.8
Q ss_pred cCccEEEeccCCCc--cCC--CCCCCCCccEEEccCCCCCCC-ChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeE
Q 002037 420 QNCEKLSLMDGNVT--ALP--DQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSL 494 (977)
Q Consensus 420 ~~~~~l~l~~~~~~--~l~--~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L 494 (977)
.++++|++++...- ..+ ....+|.|++|.+.+-.+..- ....+.++++|+.||+|+++++.+ ..++.|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 56788888764221 111 124578899998888654321 234556788899999999888877 778888888888
Q ss_pred ecCCCCCCC---CccccCCCCccEEEccCCCCcccC-------ccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEE
Q 002037 495 HLENTHLND---ASLIREFGELEVLILKGSRIVELP-------NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEEL 564 (977)
Q Consensus 495 ~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp-------~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L 564 (977)
.+++-.+.. ...+.+|++|++||+|...-..-+ +.-..|++||.||.+++.+...+-...+..=++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 888877665 467788888888888886433222 1223478888888888776555544444444555554
Q ss_pred E
Q 002037 565 Y 565 (977)
Q Consensus 565 ~ 565 (977)
.
T Consensus 281 ~ 281 (699)
T KOG3665|consen 281 A 281 (699)
T ss_pred h
Confidence 4
No 170
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.51 E-value=5.2e-05 Score=89.45 Aligned_cols=127 Identities=17% Similarity=0.206 Sum_probs=84.0
Q ss_pred CCccEEEccCCC--CCCCChhHHhcCCCccEEEccCCcCCC--CCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEE
Q 002037 442 PRLTTLFLQNNP--FADIPNAFFEHTREIKNLDLSSTNISS--LAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLI 517 (977)
Q Consensus 442 ~~L~~L~l~~~~--~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~ 517 (977)
.+|+.|+++|.. ....+......++.|+.|.+++-.+.. +-.-..++++|+.||+++++++....+++|++||+|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 467778887765 223344455568888888888765532 2223456778888888888888888888888888888
Q ss_pred ccCCCCcccC--ccccCCCCCCEEEcCCCCCCCccChh------hhhcCccccEEEccCC
Q 002037 518 LKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVIPPN------VISKLSQLEELYVGNS 569 (977)
Q Consensus 518 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~------~i~~L~~L~~L~l~~~ 569 (977)
+++-.+..-+ ..+.+|++|++||+|....... +.- .-..|++|+.|+.++.
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~-~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD-TKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccc-hHHHHHHHHhcccCccccEEecCCc
Confidence 8776655433 2367788888888887653332 111 0124778888887765
No 171
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.51 E-value=0.0023 Score=64.49 Aligned_cols=172 Identities=17% Similarity=0.185 Sum_probs=96.2
Q ss_pred CCCcccccchHHHHHHHHHHhh---cCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLK---DNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
+..+..|+|.++.++++-=.+. ..+...--|.++|++|.||||||.-+++. .-.+...-==.+.+..|+.. |
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaa----i 97 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAA----I 97 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHH----H
Confidence 4556678888887777654443 23334778999999999999999999988 33221100000011111111 1
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc------------cc--c----------cccccCCCCCCCC
Q 002037 143 ARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK------------LD--L----------AVVGIPYGEEHKG 198 (977)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~------------~~--~----------~~l~~~~~~~~~g 198 (977)
+.. ++ ..=.+++|++... ++ + ..+...++ +-
T Consensus 98 Lt~--------------------Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp---pF 152 (332)
T COG2255 98 LTN--------------------LE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP---PF 152 (332)
T ss_pred Hhc--------------------CC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC---Ce
Confidence 111 11 2234444554322 00 0 01111111 22
Q ss_pred eEEEEecCChHHHhhccC--CceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 199 CKIILTSRFKEVCDEMES--TNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 199 s~iivTtR~~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
+-|=.|||.-.+...+.. ..+.+++--+.+|-.++..+.+. .-...-.++.+.+|+++..|-|--..-+
T Consensus 153 TLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~-~l~i~i~~~~a~eIA~rSRGTPRIAnRL 223 (332)
T COG2255 153 TLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAK-ILGIEIDEEAALEIARRSRGTPRIANRL 223 (332)
T ss_pred eEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHH-HhCCCCChHHHHHHHHhccCCcHHHHHH
Confidence 335678987655332221 24678888899999999988875 1122334567899999999999544333
No 172
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=1.6e-05 Score=79.42 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=71.8
Q ss_pred cCCCCCeEecCCCCCCC---Ccccc-CCCCccEEEccCCCCccc---CccccCCCCCCEEEcCCCCCCCccChhhhhcCc
Q 002037 487 CLEKLRSLHLENTHLND---ASLIR-EFGELEVLILKGSRIVEL---PNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLS 559 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~---~~~i~-~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~ 559 (977)
.+.-++.|.+.+|.+.. ...++ ..++++.|||.+|.|+.. -.-+.+|+.|++|+++.|+....+-.. -.-+.
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~ 121 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLK 121 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-ccccc
Confidence 33355677778887765 23333 567899999999988743 333568999999999999753322110 02346
Q ss_pred cccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCc
Q 002037 560 QLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNT 605 (977)
Q Consensus 560 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 605 (977)
+|++|-+.|....|... -..+..++.++.|+++.|+.
T Consensus 122 nl~~lVLNgT~L~w~~~---------~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQS---------TSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ceEEEEEcCCCCChhhh---------hhhhhcchhhhhhhhccchh
Confidence 88899888876555322 24566777778777776643
No 173
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.50 E-value=0.003 Score=73.21 Aligned_cols=177 Identities=19% Similarity=0.199 Sum_probs=93.4
Q ss_pred CCCCcccccchHHHHHHHHH---HhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCC
Q 002037 66 PTPEFVPLKSALEVIKSVMK---LLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 134 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~---~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~ 134 (977)
+...+..+.|-++.++++.+ .+... ....+-+.++|++|+|||++|+.+++. ...| +.++.
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~i~~--- 121 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISG--- 121 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----eeccH---
Confidence 34445556676655554443 33221 122446889999999999999999987 3332 22221
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc------------c----cccccCCC--CCC
Q 002037 135 VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD------------L----AVVGIPYG--EEH 196 (977)
Q Consensus 135 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------------~----~~l~~~~~--~~~ 196 (977)
..+... ..+ ... .....+.+..+...+.+|+|||++.... . ..+...+. ...
T Consensus 122 -~~~~~~---~~g-----~~~-~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~ 191 (495)
T TIGR01241 122 -SDFVEM---FVG-----VGA-SRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN 191 (495)
T ss_pred -HHHHHH---Hhc-----ccH-HHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC
Confidence 111110 000 011 1122222222335678999999965310 0 01111111 122
Q ss_pred CCeEEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 197 KGCKIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 197 ~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
.+-.||.||...+. .+...-+..++++..+.++-.++|..++......+ ......+++.+.|.-
T Consensus 192 ~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 192 TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFS 260 (495)
T ss_pred CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCC
Confidence 34566777766542 11112345788999999999999988775322111 122457788887743
No 174
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.49 E-value=0.00011 Score=52.68 Aligned_cols=36 Identities=39% Similarity=0.570 Sum_probs=24.3
Q ss_pred CCccEEEccCCCCcccCccccCCCCCCEEEcCCCCC
Q 002037 511 GELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLF 546 (977)
Q Consensus 511 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 546 (977)
++|++|++++|+|+.+|..+++|++|++|++++|.+
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence 356777777777777776677777777777777763
No 175
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.48 E-value=0.0005 Score=79.88 Aligned_cols=51 Identities=25% Similarity=0.278 Sum_probs=41.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC---CceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNS---ISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~---~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..+..+.|.++.++++..++.... ...+++.|+|+.|+||||+++.+++.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4556678899999999998887543 12457999999999999999999987
No 176
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.004 Score=66.53 Aligned_cols=171 Identities=13% Similarity=0.123 Sum_probs=93.2
Q ss_pred HHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC-CC----------------EEEEEEeCCCCCHHHH
Q 002037 78 EVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-FD----------------KVIFVRVTQTPDVKRV 138 (977)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~-f~----------------~~~wv~~~~~~~~~~~ 138 (977)
...+.+...+..+. -...+.++|+.|+||+++|..++.. ... .. -..|+.......-.
T Consensus 11 ~~~~~l~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~-- 87 (319)
T PRK08769 11 RAYDQTVAALDAGR-LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD-- 87 (319)
T ss_pred HHHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc--
Confidence 34556666665544 2457899999999999999999876 211 11 01222100000000
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHH
Q 002037 139 QDEIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVC 211 (977)
Q Consensus 139 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~ 211 (977)
........+.+..+.+.+. .+++-++|+|+++... .-.++...+-....++.+|++|.+. .+.
T Consensus 88 ----------k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 88 ----------KLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ----------cccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCc
Confidence 0000001112222223222 3567789999998652 2223333333334466666666554 333
Q ss_pred hhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 212 DEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 212 ~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
..+ ..-..+.+.+++.+++.+.+.+. + . . ++.+..++..++|.|+.+..+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~-~--~-~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQ-G--V-S---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHc-C--C-C---hHHHHHHHHHcCCCHHHHHHH
Confidence 222 22357889999999999888764 1 1 1 223667899999999866543
No 177
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.014 Score=63.61 Aligned_cols=181 Identities=20% Similarity=0.246 Sum_probs=102.5
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCC--EEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHcc
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFD--KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ 169 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~--~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 169 (977)
....+.|||..|.|||.|++++.+. ..... .++++ +.+.....+...+.. ...+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~------~se~f~~~~v~a~~~--------~~~~~Fk~~y--- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL------TSEDFTNDFVKALRD--------NEMEKFKEKY--- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec------cHHHHHHHHHHHHHh--------hhHHHHHHhh---
Confidence 3669999999999999999999999 44443 34444 223444444443321 1223333333
Q ss_pred ceEEEEecCcccccc----ccccccCCCC-CCCCeEEEEecCCh---------HHHhhccCCceEEccCCCHHHHHHHHH
Q 002037 170 KRVLIILDDLWGKLD----LAVVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQVEELTDEDRLILFK 235 (977)
Q Consensus 170 ~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~ 235 (977)
.-=++++||++-... .+++...+.. ...|..||+|++.. .+...+...-.+++.+.+.+....++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~ 254 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILR 254 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHH
Confidence 123888999975322 1222222211 12344899998653 234445556789999999999999999
Q ss_pred HhcCCC--C-CChhhHHHHHHHHHHhCCChhHHHHHHHHhc--C--CChhHHHHHHHHHhhC
Q 002037 236 KKAGLP--E-GTKAFDRAAEEVVRQCGKLPNAIVIIGTALR--H--KPVREWNEAIKRKKAS 290 (977)
Q Consensus 236 ~~~~~~--~-~~~~~~~~~~~i~~~~~glPLai~~~~~~l~--~--~~~~~w~~~l~~l~~~ 290 (977)
+++... . +..-..-++..+.+-..-+.-|+..+..+-. + .+...-++++..+...
T Consensus 255 kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 255 KKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhcc
Confidence 977521 1 1122222333333333334555544444333 2 2556666666665544
No 178
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.43 E-value=4.5e-06 Score=93.04 Aligned_cols=125 Identities=22% Similarity=0.252 Sum_probs=95.8
Q ss_pred ccCccEEEeccCCCccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEec
Q 002037 419 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHL 496 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L 496 (977)
+..+...+.+.|.+..+... .-++.++.|+|++|.+.+.. ++..+++|++||+++|.+..+|. +...+. |..|++
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeee
Confidence 34555566666666544432 34578999999999988765 57889999999999999988887 444444 999999
Q ss_pred CCCCCCCCccccCCCCccEEEccCCCCcccCc--cccCCCCCCEEEcCCCCC
Q 002037 497 ENTHLNDASLIREFGELEVLILKGSRIVELPN--GIGTVSNLKLLDLSNNLF 546 (977)
Q Consensus 497 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~ 546 (977)
++|.++....+.+|.+|+.||+++|-|....+ -++.|..|+.|+|.||.+
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 99998888889999999999999986654322 267788899999999874
No 179
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.39 E-value=1.4e-05 Score=93.51 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=33.1
Q ss_pred ccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccc
Q 002037 736 LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLM 803 (977)
Q Consensus 736 ~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l 803 (977)
+++|+.|.+..+..+++.-..... ..+++|+.|.+.+|..++...-......+++|++|++++|..+
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~-~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALA-SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHH-hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 455555555555443332110000 1255666666666665544433344455666666666666655
No 180
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.39 E-value=9.3e-06 Score=71.70 Aligned_cols=90 Identities=27% Similarity=0.343 Sum_probs=58.3
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCCCCccEEEc
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLIL 518 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l 518 (977)
....|...++++|.+.++|..+-..++.+..|++++|.+..+|..+..++.||.|+++.|.+.. |..+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 3445666677777777777766666667777777777777777766666777777766666555 555555666666666
Q ss_pred cCCCCcccCcc
Q 002037 519 KGSRIVELPNG 529 (977)
Q Consensus 519 ~~~~l~~lp~~ 529 (977)
.++.+.++|-.
T Consensus 131 ~~na~~eid~d 141 (177)
T KOG4579|consen 131 PENARAEIDVD 141 (177)
T ss_pred CCCccccCcHH
Confidence 66555555543
No 181
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0018 Score=75.14 Aligned_cols=181 Identities=15% Similarity=0.123 Sum_probs=108.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~ 139 (977)
..++.|...-.+++.++++.|+++. .-++=+.++|++|+|||-||++++... .+-|++++... .
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----gVPF~svSGSE-F---- 380 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----GVPFFSVSGSE-F---- 380 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----CCceeeechHH-H----
Confidence 3444455555677777788776643 235678999999999999999999871 23345555421 1
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-----------------ccccccCCCCCC--CCeE
Q 002037 140 DEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-----------------LAVVGIPYGEEH--KGCK 200 (977)
Q Consensus 140 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-----------------~~~l~~~~~~~~--~gs~ 200 (977)
.+.+.. . ...+...+...-+...+.++.+|+++...- +.++........ .+--
T Consensus 381 ---vE~~~g----~-~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 381 ---VEMFVG----V-GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred ---HHHhcc----c-chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 111100 0 022333344444457889999998864311 112222221222 2334
Q ss_pred EEEecCChHHHhh-----ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 201 IILTSRFKEVCDE-----MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 201 iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
++-+|+..++... -.-++.+.++.-+.....++|.-++.......+..++++ |+....|.+=|.
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 5557776666321 223467888888999999999988874443345566677 999999988554
No 182
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.33 E-value=0.00031 Score=66.79 Aligned_cols=100 Identities=23% Similarity=0.390 Sum_probs=61.0
Q ss_pred CCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCccc-CCCCCeEecCCCCCCC---CccccCCCCccEEE
Q 002037 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPC-LEKLRSLHLENTHLND---ASLIREFGELEVLI 517 (977)
Q Consensus 442 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~-l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~ 517 (977)
.....+++++|.+..++. |.+++.|..|.+++|.|+.+-+.+.. +++|..|.|.+|++.. ...+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 355567777777666544 56777777777777777777665543 4457777777766544 44555566666666
Q ss_pred ccCCCCcccCcc----ccCCCCCCEEEcCC
Q 002037 518 LKGSRIVELPNG----IGTVSNLKLLDLSN 543 (977)
Q Consensus 518 l~~~~l~~lp~~----i~~l~~L~~L~l~~ 543 (977)
+-+|.+++.+.. +..+++|++||..+
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 666655544322 44555555555543
No 183
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.33 E-value=0.0017 Score=62.56 Aligned_cols=134 Identities=18% Similarity=0.220 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCC------------------CCEEEEEEeCCC-
Q 002037 75 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIP------------------FDKVIFVRVTQT- 132 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~------------------f~~~~wv~~~~~- 132 (977)
|.++..+.+.+.+..+. -...+.++|+.|+||+|+|..+++. ... ..-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc
Confidence 45667777777776665 2447899999999999999999887 221 122334432222
Q ss_pred --CCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCCh
Q 002037 133 --PDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFK 208 (977)
Q Consensus 133 --~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~ 208 (977)
..++++. ++...+.... ..+++=++|+||++.. ....++...+-....++++|++|++.
T Consensus 80 ~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 80 KSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred chhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 2222222 2222221110 0246778899999875 33344443443445688888888876
Q ss_pred HH-Hhh-ccCCceEEccCCC
Q 002037 209 EV-CDE-MESTNYVQVEELT 226 (977)
Q Consensus 209 ~v-~~~-~~~~~~~~l~~L~ 226 (977)
+- ... ...-..+.+++++
T Consensus 143 ~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 143 SKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp GGS-HHHHTTSEEEEE----
T ss_pred HHChHHHHhhceEEecCCCC
Confidence 53 222 2222456666653
No 184
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.005 Score=66.94 Aligned_cols=157 Identities=13% Similarity=0.089 Sum_probs=83.3
Q ss_pred ccc-hHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhh
Q 002037 73 LKS-ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDEIARFLNT 148 (977)
Q Consensus 73 ~~g-r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 148 (977)
++| .+..++.+.+.+..+. -.+...++|+.|+||||+|+.+++. ....+.. ........+.+...-..
T Consensus 7 i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~~~~hp 78 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRIDSGNHP 78 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHhcCCCC
Confidence 445 6677777777776554 2457799999999999999999877 2111100 00000111111100000
Q ss_pred cc------ccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChH-HHhhc-
Q 002037 149 EL------EGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKE-VCDEM- 214 (977)
Q Consensus 149 ~~------~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~~- 214 (977)
+. ......+....+.+.+. .+++-++|+|+++... ...++...+-....++.+|++|.+.. +...+
T Consensus 79 D~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 79 DVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred CEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 00 00000111122222221 2456678999987652 23334444444445666777776543 32222
Q ss_pred cCCceEEccCCCHHHHHHHHHHh
Q 002037 215 ESTNYVQVEELTDEDRLILFKKK 237 (977)
Q Consensus 215 ~~~~~~~l~~L~~~~~~~lf~~~ 237 (977)
.....+++++++.++..+.+.+.
T Consensus 159 SRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 159 SRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred hhceeeeCCCCCHHHHHHHHHHc
Confidence 22367999999999998888654
No 185
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.021 Score=60.99 Aligned_cols=189 Identities=7% Similarity=0.052 Sum_probs=98.9
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcc------
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL------ 150 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------ 150 (977)
..+++.+.+..+. -.+.+.++|+.|+||+++|+.++.. ...-+. .....-...+.+...-..+.
T Consensus 11 ~~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQS-------EACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 3455555554443 2458899999999999999999876 111000 00000111111111000000
Q ss_pred --ccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHHhhc-cCCceE
Q 002037 151 --EGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNYV 220 (977)
Q Consensus 151 --~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~-~~~~~~ 220 (977)
......+....+.+.+. .+++-++|+|+++... ...++...+-...+++.+|++|.+. .+...+ ..-..+
T Consensus 83 ~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~ 162 (319)
T PRK06090 83 KEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQW 162 (319)
T ss_pred cCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeE
Confidence 00001111222222221 2556688889988652 3333433343334566666666554 343332 223678
Q ss_pred EccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHH
Q 002037 221 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRK 287 (977)
Q Consensus 221 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l 287 (977)
.+.+++.+++.+.+.+... . .+..++..++|.|+.+..+ +.......++.++..+
T Consensus 163 ~~~~~~~~~~~~~L~~~~~--~-------~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~l 217 (319)
T PRK06090 163 VVTPPSTAQAMQWLKGQGI--T-------VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQL 217 (319)
T ss_pred eCCCCCHHHHHHHHHHcCC--c-------hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHHH
Confidence 9999999999998876421 1 1356788999999866544 3333334444444433
No 186
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=2e-05 Score=92.17 Aligned_cols=119 Identities=24% Similarity=0.227 Sum_probs=76.0
Q ss_pred cccccceeeccCc-cCcceeee-cccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchh
Q 002037 735 GLKRLRELVLVGL-PKVLTIWK-GNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEA 812 (977)
Q Consensus 735 ~~~~L~~L~L~~~-~~L~~i~~-~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~ 812 (977)
..+.|++|++.++ ........ .......+++|+.|++..|..++..........+++|+.|.+.+|..+++..-..
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~-- 289 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS-- 289 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH--
Confidence 3677777777662 22211110 0112235689999999999887766444455668999999999998744321110
Q ss_pred hhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEeccc
Q 002037 813 EVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCN 871 (977)
Q Consensus 813 ~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~ 871 (977)
.. ..+++|++|+|++|..+++......+.++++|+.|.+..+.
T Consensus 290 -i~---------------~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 290 -IA---------------ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred -HH---------------HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC
Confidence 01 14788999999999998665444446668877776655544
No 187
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.26 E-value=0.015 Score=66.10 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=82.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+-|.++|++|+|||.+|+++++. ...| +-++++. +.. ...+.++ .....+.+..+...++
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~---~~l~~~~------l~~--------~~vGese-~~l~~~f~~A~~~~P~ 320 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPL---LRLDVGK------LFG--------GIVGESE-SRMRQMIRIAEALSPC 320 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE---EEEEhHH------hcc--------cccChHH-HHHHHHHHHHHhcCCc
Confidence 567899999999999999999998 4333 1122211 100 0011111 1222222223346789
Q ss_pred EEEecCcccccc----c----------cccccCCCCCCCCeEEEEecCChHH-----HhhccCCceEEccCCCHHHHHHH
Q 002037 173 LIILDDLWGKLD----L----------AVVGIPYGEEHKGCKIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLIL 233 (977)
Q Consensus 173 LlvlDdv~~~~~----~----------~~l~~~~~~~~~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~l 233 (977)
+|++|+++.... . ..+...+.....+-.||.||...+- .+.-.-+..+.++.-+.++-.++
T Consensus 321 IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~I 400 (489)
T CHL00195 321 ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKI 400 (489)
T ss_pred EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHH
Confidence 999999974311 0 0011111112334456678866543 12123346788998899999999
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 234 FKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 234 f~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
|..+............-...+++.+.|.-
T Consensus 401 l~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 401 FKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 99887532211111122456677776654
No 188
>PRK08118 topology modulation protein; Reviewed
Probab=97.26 E-value=0.00015 Score=70.16 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=27.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh----cCCCCEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ----EIPFDKVIF 126 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~----~~~f~~~~w 126 (977)
+.|.|+|++|+||||+|+.+++. .-+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 36899999999999999999998 345777776
No 189
>PRK08116 hypothetical protein; Validated
Probab=97.25 E-value=0.00085 Score=70.37 Aligned_cols=101 Identities=25% Similarity=0.213 Sum_probs=56.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 173 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 173 (977)
..+.++|..|+|||.||.++++. ......+++++ ...++..+......... .....+.+.+. +- =|
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~------~~~ll~~i~~~~~~~~~-----~~~~~~~~~l~-~~-dl 181 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN------FPQLLNRIKSTYKSSGK-----EDENEIIRSLV-NA-DL 181 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHHhcccc-----ccHHHHHHHhc-CC-CE
Confidence 46899999999999999999999 33344566764 33444444443322111 11122333343 22 38
Q ss_pred EEecCcccc--ccccc--cccCCCC-CCCCeEEEEecCCh
Q 002037 174 IILDDLWGK--LDLAV--VGIPYGE-EHKGCKIILTSRFK 208 (977)
Q Consensus 174 lvlDdv~~~--~~~~~--l~~~~~~-~~~gs~iivTtR~~ 208 (977)
|||||+... .+|.. +..-+.. ...|..+||||...
T Consensus 182 LviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 182 LILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 999999532 33321 1111111 12455699999743
No 190
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.013 Score=62.86 Aligned_cols=172 Identities=8% Similarity=0.049 Sum_probs=93.7
Q ss_pred HHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--c-CCCCEEEEEEeCCCCCHHHHHHHHHHHhhhc-------
Q 002037 80 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVRVTQTPDVKRVQDEIARFLNTE------- 149 (977)
Q Consensus 80 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~------- 149 (977)
.+.+...+..+. -.+.+.++|+.|+||+++|+.++.. . ..... .....-...+.+...-..+
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 445566555544 2457889999999999999999987 2 21110 0111111122221110000
Q ss_pred cccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHHhhc-cCCceEE
Q 002037 150 LEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNYVQ 221 (977)
Q Consensus 150 ~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~ 221 (977)
.......+....+.+.+. .+++-++|+|+++... ...++...+-...++..+|++|.+. .+...+ ..-..+.
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~ 162 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWL 162 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEe
Confidence 000011222223333332 3566788899998652 2333333343344566666666655 333222 2235889
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 222 VEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 222 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
+.+++.++..+.+.+.... . .+.+...+..++|.|+.+
T Consensus 163 ~~~~~~~~~~~~L~~~~~~---~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 163 IHPPEEQQALDWLQAQSSA---E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred CCCCCHHHHHHHHHHHhcc---C---hHHHHHHHHHcCCCHHHH
Confidence 9999999999888876431 1 123566788899999633
No 191
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.24 E-value=0.00076 Score=68.12 Aligned_cols=37 Identities=27% Similarity=0.441 Sum_probs=31.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
-.++|+|..|+||||++..+... .+.|+.+++++-..
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~ 51 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEY 51 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCC
Confidence 36889999999999999999888 88898888875533
No 192
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0087 Score=65.28 Aligned_cols=157 Identities=20% Similarity=0.233 Sum_probs=93.4
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH---cc
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK---RQ 169 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~---~~ 169 (977)
....+.+.|++|+|||+||..++... .|..+=-++..+.. +.++......+..... +.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S-~FPFvKiiSpe~mi------------------G~sEsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS-DFPFVKIISPEDMI------------------GLSESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc-CCCeEEEeChHHcc------------------CccHHHHHHHHHHHHHHhhcC
Confidence 46688899999999999999998862 34332222211111 1111122222222211 25
Q ss_pred ceEEEEecCccccccccccccCC---------------CCCCCCeEEEEecCChHHHhhccC----CceEEccCCCH-HH
Q 002037 170 KRVLIILDDLWGKLDLAVVGIPY---------------GEEHKGCKIILTSRFKEVCDEMES----TNYVQVEELTD-ED 229 (977)
Q Consensus 170 ~~~LlvlDdv~~~~~~~~l~~~~---------------~~~~~gs~iivTtR~~~v~~~~~~----~~~~~l~~L~~-~~ 229 (977)
.--.||+||+....+|..++..+ ++.++.--|+-||....|...|+- ...|+++.++. ++
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~ 677 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQ 677 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHH
Confidence 66789999999887777665443 334445556778888888877754 35789999987 77
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 230 RLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 230 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
..+.++..-. -.+...+.++.+...+| +-..|+.+-.++
T Consensus 678 ~~~vl~~~n~--fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 678 LLEVLEELNI--FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred HHHHHHHccC--CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7777776531 12333444556666655 333444444444
No 193
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.17 E-value=0.00065 Score=65.79 Aligned_cols=100 Identities=16% Similarity=0.274 Sum_probs=69.8
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCC-CEEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f-~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++|-++.++.+--...+++ ++-+.|.||+|+||||-+..+++. ...+ +++.=.++|+...+.-+...|-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK 100 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIK 100 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHH
Confidence 3445578888888888877667776 889999999999999999999988 4333 5666677777666555554443
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
...... -.+..++.-.+|||+.++.
T Consensus 101 ~FAQ~k--------------v~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 101 MFAQKK--------------VTLPPGRHKIIILDEADSM 125 (333)
T ss_pred HHHHhh--------------ccCCCCceeEEEeeccchh
Confidence 322111 1112467778999998876
No 194
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.17 E-value=3.9e-05 Score=67.83 Aligned_cols=107 Identities=20% Similarity=0.271 Sum_probs=70.3
Q ss_pred EEEccCCCCCCCChh--HHhcCCCccEEEccCCcCCCCCCCccc-CCCCCeEecCCCCCCC-CccccCCCCccEEEccCC
Q 002037 446 TLFLQNNPFADIPNA--FFEHTREIKNLDLSSTNISSLAPSLPC-LEKLRSLHLENTHLND-ASLIREFGELEVLILKGS 521 (977)
Q Consensus 446 ~L~l~~~~~~~~~~~--~~~~l~~Lr~L~l~~~~~~~lp~~~~~-l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~ 521 (977)
.++|++|.+..++.. .+....+|...++++|.+...|+.+.. .+.+.+|++.+|.+++ |..+..++.|+.|+++.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 344555544433322 234556677778888888888876653 3477777777777777 666777777777777777
Q ss_pred CCcccCccccCCCCCCEEEcCCCCCCCccChh
Q 002037 522 RIVELPNGIGTVSNLKLLDLSNNLFLQVIPPN 553 (977)
Q Consensus 522 ~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 553 (977)
.+...|.-+..|.+|-.|+..++. ...+|..
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 777777777777777777777665 3344443
No 195
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.16 E-value=0.026 Score=61.39 Aligned_cols=193 Identities=14% Similarity=0.173 Sum_probs=119.5
Q ss_pred hHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHH-HHHHhhcCCCCEEEEEEeCCC---CCHHHHHHHHHHHhhhc--
Q 002037 76 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLM-KQVMKQEIPFDKVIFVRVTQT---PDVKRVQDEIARFLNTE-- 149 (977)
Q Consensus 76 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~-- 149 (977)
|.+.+++|-.||.+.. -.+|.|.|+-|+||+.|+ .++.+++.+ +..+++.+- .+-..+.+.++.++|--
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~~r~~---vL~IDC~~i~~ar~D~~~I~~lA~qvGY~Pv 75 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLKDRKN---VLVIDCDQIVKARGDAAFIKNLASQVGYFPV 75 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHhCCCC---EEEEEChHhhhccChHHHHHHHHHhcCCCcc
Confidence 5677899999998877 679999999999999999 777766333 677766542 23344555555555310
Q ss_pred ---------------------ccc--chHHHHH--------HHHHH-------------------HHH--ccceEEEEec
Q 002037 150 ---------------------LEG--DVEVLRA--------AFLSE-------------------RLK--RQKRVLIILD 177 (977)
Q Consensus 150 ---------------------~~~--~~~~~~~--------~~l~~-------------------~l~--~~~~~LlvlD 177 (977)
..+ .+.+... ..+++ ++. ..++=+||+|
T Consensus 76 Fsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVId 155 (431)
T PF10443_consen 76 FSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVID 155 (431)
T ss_pred hHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEEc
Confidence 000 1111111 11111 010 1236689999
Q ss_pred Ccccc-----------ccccccccCCCCCCCCeEEEEecCChHHHh----hccC--CceEEccCCCHHHHHHHHHHhcCC
Q 002037 178 DLWGK-----------LDLAVVGIPYGEEHKGCKIILTSRFKEVCD----EMES--TNYVQVEELTDEDRLILFKKKAGL 240 (977)
Q Consensus 178 dv~~~-----------~~~~~l~~~~~~~~~gs~iivTtR~~~v~~----~~~~--~~~~~l~~L~~~~~~~lf~~~~~~ 240 (977)
|.... .+|.+.. ...+-.+||++|-+....+ .+.. .+.+.+...+.+.|.++...+...
T Consensus 156 nF~~k~~~~~~iy~~laeWAa~L----v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~ 231 (431)
T PF10443_consen 156 NFLHKAEENDFIYDKLAEWAASL----VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDE 231 (431)
T ss_pred chhccCcccchHHHHHHHHHHHH----HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcc
Confidence 97544 2333221 1234467999988766533 3322 257889999999999999988753
Q ss_pred CCCC-------------------hhhHHHHHHHHHHhCCChhHHHHHHHHhc-CCCh
Q 002037 241 PEGT-------------------KAFDRAAEEVVRQCGKLPNAIVIIGTALR-HKPV 277 (977)
Q Consensus 241 ~~~~-------------------~~~~~~~~~i~~~~~glPLai~~~~~~l~-~~~~ 277 (977)
.... ....+-....++.+||==.=+..+++.++ +.++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 232 DTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred cccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 2100 12444567788888998888888888887 4443
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.15 E-value=0.0085 Score=62.95 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHH
Q 002037 77 LEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~ 139 (977)
.+.++++..++..+. -|.+.|++|+|||++|+.++.. .. ..+.+++....+..+++
T Consensus 8 ~~l~~~~l~~l~~g~----~vLL~G~~GtGKT~lA~~la~~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 8 KRVTSRALRYLKSGY----PVHLRGPAGTGKTTLAMHVARKRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHHhcCC----eEEEEcCCCCCHHHHHHHHHHHhCC---CEEEEeCCccCCHHHHh
Confidence 445566666666544 5678999999999999999875 32 23456666555544443
No 197
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.013 Score=66.15 Aligned_cols=129 Identities=18% Similarity=0.202 Sum_probs=68.8
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccce
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 171 (977)
..+-|..+|++|+|||++|+++++. ...| +.+..+. +.. ...+.++. ....+.+.-++--+
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nF-----lsvkgpE--------L~s----k~vGeSEr-~ir~iF~kAR~~aP 528 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNF-----LSVKGPE--------LFS----KYVGESER-AIREVFRKARQVAP 528 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCe-----eeccCHH--------HHH----HhcCchHH-HHHHHHHHHhhcCC
Confidence 4678999999999999999999998 5555 2332210 000 00111111 11122222223456
Q ss_pred EEEEecCcccccc-------------ccccccCCCCC--CCCeEEEEecCChHHH--hhcc---CCceEEccCCCHHHHH
Q 002037 172 VLIILDDLWGKLD-------------LAVVGIPYGEE--HKGCKIILTSRFKEVC--DEME---STNYVQVEELTDEDRL 231 (977)
Q Consensus 172 ~LlvlDdv~~~~~-------------~~~l~~~~~~~--~~gs~iivTtR~~~v~--~~~~---~~~~~~l~~L~~~~~~ 231 (977)
.++.||.++.... +..+...+... .++--||-.|..++.. ..+. -+..+.++.-+.+.-.
T Consensus 529 ~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~ 608 (693)
T KOG0730|consen 529 CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARL 608 (693)
T ss_pred eEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHH
Confidence 8888888764311 11111111111 1233344444433331 1122 3467888888888889
Q ss_pred HHHHHhcC
Q 002037 232 ILFKKKAG 239 (977)
Q Consensus 232 ~lf~~~~~ 239 (977)
++|+.++.
T Consensus 609 ~Ilk~~~k 616 (693)
T KOG0730|consen 609 EILKQCAK 616 (693)
T ss_pred HHHHHHHh
Confidence 99998886
No 198
>PRK08181 transposase; Validated
Probab=97.12 E-value=0.00077 Score=70.16 Aligned_cols=78 Identities=22% Similarity=0.173 Sum_probs=46.7
Q ss_pred HHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 002037 85 KLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLS 163 (977)
Q Consensus 85 ~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~ 163 (977)
+++... .-+.++|+.|+|||.||..+.+. ......++|+++ .++...+..... .. ......
T Consensus 101 ~~~~~~----~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~------~~L~~~l~~a~~----~~----~~~~~l 162 (269)
T PRK08181 101 SWLAKG----ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT------TDLVQKLQVARR----EL----QLESAI 162 (269)
T ss_pred HHHhcC----ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH------HHHHHHHHHHHh----CC----cHHHHH
Confidence 455433 36999999999999999999988 333345566643 344444433211 11 111223
Q ss_pred HHHHccceEEEEecCcccc
Q 002037 164 ERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 164 ~~l~~~~~~LlvlDdv~~~ 182 (977)
+.+. +.=|||+||+...
T Consensus 163 ~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 163 AKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHh--cCCEEEEeccccc
Confidence 3332 4459999999643
No 199
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.12 E-value=0.0024 Score=68.59 Aligned_cols=101 Identities=14% Similarity=0.089 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCE-EEEEEeCCC-CCHHHHHHHHHHHhhhccccchHH
Q 002037 81 KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDK-VIFVRVTQT-PDVKRVQDEIARFLNTELEGDVEV 156 (977)
Q Consensus 81 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~ 156 (977)
.++++.+..-.. -+.+.|+|..|+|||||++.+++. .++-+. ++|+.+.+. .++.++.+.+...+.....+....
T Consensus 121 ~RvID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~ 199 (380)
T PRK12608 121 MRVVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPD 199 (380)
T ss_pred HhhhhheeecCC-CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHH
Confidence 346666654322 236699999999999999999988 334344 467666654 578888888877665433211111
Q ss_pred H------HH-HHHHHHHHccceEEEEecCcccc
Q 002037 157 L------RA-AFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 157 ~------~~-~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
. .. .....+...+++++||+|++...
T Consensus 200 ~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 200 EHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 11 22222233689999999998644
No 200
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.12 E-value=0.03 Score=56.28 Aligned_cols=47 Identities=17% Similarity=0.292 Sum_probs=33.7
Q ss_pred cccccchHHHHHHHHHHh---hcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 70 FVPLKSALEVIKSVMKLL---KDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..++|-+..++.+++-. ..+. ...-+.+||..|+|||++++++.+.
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~-pannvLL~G~rGtGKSSlVkall~~ 75 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGL-PANNVLLWGARGTGKSSLVKALLNE 75 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCC-CCcceEEecCCCCCHHHHHHHHHHH
Confidence 334667777777766522 2222 2557788999999999999999987
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.07 E-value=0.0029 Score=77.42 Aligned_cols=105 Identities=13% Similarity=0.254 Sum_probs=58.8
Q ss_pred ccchHHHHHHHHHHhhc-------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
++|.++.++.+.+.+.. .+....++.++|+.|+|||.+|+.++.. .......+-++++.-.+. ..+.+
T Consensus 568 v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~----~~~~~ 643 (852)
T TIGR03345 568 VIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEA----HTVSR 643 (852)
T ss_pred EcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhh----hhhcc
Confidence 56888888888887642 2223558999999999999999999887 222223333333321111 11112
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
-++.. ++.........+.+.+++...-+|+||+++..
T Consensus 644 l~g~~-~gyvg~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 644 LKGSP-PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred ccCCC-CCcccccccchHHHHHHhCCCcEEEEechhhc
Confidence 22221 11100111122334444456679999999754
No 202
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.06 E-value=0.00016 Score=74.54 Aligned_cols=127 Identities=24% Similarity=0.294 Sum_probs=85.4
Q ss_pred cCccEEEeccCCCccCCC------CCCCCCccEEEccCCCCCC----CChhHHhcCCCccEEEccCCcCC-----CCCCC
Q 002037 420 QNCEKLSLMDGNVTALPD------QPKCPRLTTLFLQNNPFAD----IPNAFFEHTREIKNLDLSSTNIS-----SLAPS 484 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~------~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~ 484 (977)
..+|.+..++|.+.+.+. +..++.|..+.++.|.+.. +....|.++++|++|||.+|-++ .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 467777777776655433 2455778888888887543 22334678888888888888766 23446
Q ss_pred cccCCCCCeEecCCCCCCC--Cc-----cccCCCCccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCC
Q 002037 485 LPCLEKLRSLHLENTHLND--AS-----LIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLF 546 (977)
Q Consensus 485 ~~~l~~L~~L~L~~~~l~~--~~-----~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~ 546 (977)
++.+++|+.|++++|.++. .. .-...++|++|.+.+|.++ .+-..+...+.|+.|+|++|.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 6777788888888888776 11 1123677888888887765 2334456677788888888764
No 203
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.03 E-value=0.003 Score=71.01 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=109.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
+..|..++|.+.....|.+.+..+. -.......|+-|+||||+|+-++.- ...- ...++...-...++|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~------~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENG------PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCC------CCCCcchhhhhhHhhhc
Confidence 3456677899999999998887765 2346678899999999999999877 1110 11112222223333332
Q ss_pred H--h---hhccccchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEE-ecCChHH-H
Q 002037 145 F--L---NTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIIL-TSRFKEV-C 211 (977)
Q Consensus 145 ~--l---~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iiv-TtR~~~v-~ 211 (977)
- + ..+.......+..+.+.+... .++.=+.|+|+|.-. ..|.++...+-.....-..|+ ||-...+ .
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 1 0 000011112223344444432 356668899999744 445555544433334444444 5544444 2
Q ss_pred hhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 212 DEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 212 ~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
......+.|.++.++.++-...+...+. .+.-...++....|++...|..
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~-~E~I~~e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILD-KEGINIEEDALSLIARAAEGSL 214 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHH-hcCCccCHHHHHHHHHHcCCCh
Confidence 2233446899999999999888888775 2233444566677777777743
No 204
>PRK07261 topology modulation protein; Provisional
Probab=97.01 E-value=0.0021 Score=62.54 Aligned_cols=31 Identities=29% Similarity=0.563 Sum_probs=24.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh----cCCCCEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ----EIPFDKVIF 126 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~----~~~f~~~~w 126 (977)
.|.|+|++|+||||||+.+... .-+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 5899999999999999999876 223455565
No 205
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.99 E-value=0.0041 Score=63.21 Aligned_cols=47 Identities=21% Similarity=0.319 Sum_probs=37.6
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHH
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~ 140 (977)
.-+++.|+|.+|+|||++|.+++.. ...-..++|++... ++..++.+
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CCHHHHHH
Confidence 3569999999999999999998877 44457899999876 66655544
No 206
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.98 E-value=0.0071 Score=74.63 Aligned_cols=105 Identities=18% Similarity=0.282 Sum_probs=59.6
Q ss_pred ccchHHHHHHHHHHhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
++|.+..++.+...+... +....++.++|+.|+|||++|+.+... ...-...+.++++.-.+... +.+
T Consensus 567 v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~----~~~ 642 (852)
T TIGR03346 567 VVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHS----VAR 642 (852)
T ss_pred cCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccch----HHH
Confidence 678888888888877542 112457889999999999999999987 33233445555554322111 111
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
.++.. ++.........+...++.....+|+||+++..
T Consensus 643 l~g~~-~g~~g~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 643 LIGAP-PGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred hcCCC-CCccCcccccHHHHHHHcCCCcEEEEeccccC
Confidence 12211 11000001122333333334458999999765
No 207
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.96 E-value=0.0047 Score=75.80 Aligned_cols=105 Identities=19% Similarity=0.310 Sum_probs=57.4
Q ss_pred ccchHHHHHHHHHHhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
++|.+..++.+...+... +....++.++|+.|+|||++|+.+++. ...-...+.++++.-... ..+.+
T Consensus 570 viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~----~~~~~ 645 (857)
T PRK10865 570 VIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK----HSVSR 645 (857)
T ss_pred EeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh----hhHHH
Confidence 568888887777766431 112357899999999999999999977 222233455555432111 11122
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
-++.. ++.........+.+.++....-+|+|||+...
T Consensus 646 LiG~~-pgy~g~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 646 LVGAP-PGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HhCCC-CcccccchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 22211 11100011122333333334469999999754
No 208
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.96 E-value=0.0057 Score=74.30 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=58.7
Q ss_pred ccchHHHHHHHHHHhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARF 145 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 145 (977)
++|.++.++.+.+.+... +....++.++|+.|+|||++|+.++..- +...+.+++++-.+.. .+.+.
T Consensus 456 v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l--~~~~~~~d~se~~~~~----~~~~l 529 (731)
T TIGR02639 456 IFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL--GVHLERFDMSEYMEKH----TVSRL 529 (731)
T ss_pred eeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh--cCCeEEEeCchhhhcc----cHHHH
Confidence 567777888877776531 1224578999999999999999999872 1234555555422211 12222
Q ss_pred hhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 146 LNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 146 l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
++.... .........+.+.++....-+++||+++..
T Consensus 530 ig~~~g-yvg~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 530 IGAPPG-YVGFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred hcCCCC-CcccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 222111 100111223344444445569999999865
No 209
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.94 E-value=0.013 Score=71.42 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=93.2
Q ss_pred cccccchHHHHHHHHHHhhc-----------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKD-----------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 137 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~ 137 (977)
+..+.|.+..++++.+.+.- +-...+-|.++|++|+|||++|+++++. ...| +.+... +
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f-----i~v~~~----~ 522 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF-----IAVRGP----E 522 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE-----EEEehH----H
Confidence 33455666666655554321 1112456889999999999999999998 4443 222211 1
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--------------ccccccCCCC--CCCCeEE
Q 002037 138 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--------------LAVVGIPYGE--EHKGCKI 201 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--------------~~~l~~~~~~--~~~gs~i 201 (977)
+... ..+.++ .....+........+.+|++|+++.... ...+...+.. ...+-.|
T Consensus 523 ----l~~~----~vGese-~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 523 ----ILSK----WVGESE-KAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred ----Hhhc----ccCcHH-HHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 1110 111111 1222333333346789999999864310 0111111111 2234567
Q ss_pred EEecCChHHHhh--c---cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 202 ILTSRFKEVCDE--M---ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 202 ivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
|.||...+.... . .-+..+.++..+.++-.++|+.+.......++ .-...+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 777766654221 1 23467889999999999999876542211111 11456677777754
No 210
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.94 E-value=0.027 Score=61.05 Aligned_cols=173 Identities=11% Similarity=0.044 Sum_probs=94.0
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--c-CCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcc-----
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL----- 150 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----- 150 (977)
..+++.+.+..+. -.+.+.++|+.|+||+++|..++.. . ..-+. ...+.-...+.+...-..+.
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGH-------KSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred HHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHHcCCCCCEEEEec
Confidence 4556666666544 2558889999999999999998876 1 11110 00011111111111000000
Q ss_pred c---cchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChH-HHhh-ccCCce
Q 002037 151 E---GDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKE-VCDE-MESTNY 219 (977)
Q Consensus 151 ~---~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~-~~~~~~ 219 (977)
. .....+....+.+.+. .+++-++|+|+++... ...++...+-....++.+|++|.+.+ +... ...-..
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 0 0011222223333332 3677789999988652 23333333333345666666666543 4332 222357
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai 265 (977)
+.+.+++.+++.+.+.+..+ ...+.+..++..++|.|...
T Consensus 162 ~~~~~~~~~~~~~~L~~~~~------~~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 162 HYLAPPPEQYALTWLSREVT------MSQDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccCCCCCHHHHHHHHHHccC------CCHHHHHHHHHHcCCCHHHH
Confidence 89999999999988866432 11233678899999999644
No 211
>PRK12377 putative replication protein; Provisional
Probab=96.89 E-value=0.018 Score=59.30 Aligned_cols=74 Identities=22% Similarity=0.231 Sum_probs=46.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
...+.++|..|+|||+||.++++. ......++++++. ++...|...... ... ...+.+.+ .+-=
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~------~l~~~l~~~~~~---~~~----~~~~l~~l--~~~d 165 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP------DVMSRLHESYDN---GQS----GEKFLQEL--CKVD 165 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH------HHHHHHHHHHhc---cch----HHHHHHHh--cCCC
Confidence 458999999999999999999999 4444446776543 344444333211 111 11233333 3567
Q ss_pred EEEecCcccc
Q 002037 173 LIILDDLWGK 182 (977)
Q Consensus 173 LlvlDdv~~~ 182 (977)
||||||+...
T Consensus 166 LLiIDDlg~~ 175 (248)
T PRK12377 166 LLVLDEIGIQ 175 (248)
T ss_pred EEEEcCCCCC
Confidence 9999999543
No 212
>PRK04132 replication factor C small subunit; Provisional
Probab=96.85 E-value=0.014 Score=70.00 Aligned_cols=151 Identities=9% Similarity=0.121 Sum_probs=92.2
Q ss_pred Ec--CCCChHHHHHHHHHhh--cCCC-CEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEE
Q 002037 100 YG--SGGIGKTTLMKQVMKQ--EIPF-DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLI 174 (977)
Q Consensus 100 ~G--~gGiGKTtLa~~v~~~--~~~f-~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~Ll 174 (977)
.| |.|+||||+|..++++ .+.+ ..++-+++++...+..+...| ..+....+ +...+.-++
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iI-k~~a~~~~--------------~~~~~~KVv 634 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKV-KEFARTKP--------------IGGASFKII 634 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHH-HHHHhcCC--------------cCCCCCEEE
Confidence 36 8899999999999998 3334 246778888765655443333 22211100 001245799
Q ss_pred EecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHH
Q 002037 175 ILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRA 250 (977)
Q Consensus 175 vlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~ 250 (977)
|+|+++... ...++...+-......++|.+|.+. .+...+ .....+.+++++.++..+.+.+.+... .-.-.++.
T Consensus 635 IIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E-gi~i~~e~ 713 (846)
T PRK04132 635 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-GLELTEEG 713 (846)
T ss_pred EEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc-CCCCCHHH
Confidence 999998763 3444433333333456666655554 332222 223689999999999998888766421 11223567
Q ss_pred HHHHHHHhCCChhHHH
Q 002037 251 AEEVVRQCGKLPNAIV 266 (977)
Q Consensus 251 ~~~i~~~~~glPLai~ 266 (977)
...|++.++|-+..+.
T Consensus 714 L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 714 LQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHcCCCHHHHH
Confidence 8899999999874433
No 213
>PHA00729 NTP-binding motif containing protein
Probab=96.85 E-value=0.0048 Score=61.68 Aligned_cols=34 Identities=24% Similarity=0.416 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 82 SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 82 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++.+...+ ...|.|+|.+|+||||||..+.+.
T Consensus 7 ~~~~~l~~~~--f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 7 KIVSAYNNNG--FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred HHHHHHhcCC--eEEEEEECCCCCCHHHHHHHHHHH
Confidence 3455555555 568999999999999999999886
No 214
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.78 E-value=0.0075 Score=62.58 Aligned_cols=87 Identities=23% Similarity=0.259 Sum_probs=53.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh---cCC----CCEEEEEEeCCCCCHHHHHHHHHHHhhhccc-----------cc--
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ---EIP----FDKVIFVRVTQTPDVKRVQDEIARFLNTELE-----------GD-- 153 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~---~~~----f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~~-- 153 (977)
-.++.|+|.+|+|||++|.+++-. ... -..++|++....++..++.+ +++..+.... ..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~~ 97 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNSD 97 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCHH
Confidence 469999999999999999998755 221 36899999888777655433 3333321100 00
Q ss_pred hHHHHHHHHHHHHHcc-ceEEEEecCccc
Q 002037 154 VEVLRAAFLSERLKRQ-KRVLIILDDLWG 181 (977)
Q Consensus 154 ~~~~~~~~l~~~l~~~-~~~LlvlDdv~~ 181 (977)
........+.+.+.+. +.-++|+|.+..
T Consensus 98 ~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 98 HQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 1111223344444444 677888888754
No 215
>PRK06526 transposase; Provisional
Probab=96.77 E-value=0.0011 Score=68.77 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.-+.|+|++|+|||+||..+.+.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999887
No 216
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.77 E-value=0.013 Score=60.09 Aligned_cols=92 Identities=13% Similarity=0.221 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchH
Q 002037 77 LEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVE 155 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 155 (977)
...+..+.+...+.......+.++|.+|+|||+||.++++. ...-..++++++ .++...+-..... ...
T Consensus 82 ~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~------~~l~~~l~~~~~~--~~~-- 151 (244)
T PRK07952 82 MNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV------ADIMSAMKDTFSN--SET-- 151 (244)
T ss_pred HHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH------HHHHHHHHHHHhh--ccc--
Confidence 33455555544432222457899999999999999999998 433345666643 3444433332210 111
Q ss_pred HHHHHHHHHHHHccceEEEEecCcccc
Q 002037 156 VLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 156 ~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
....+.+.+. +.=+||+||+...
T Consensus 152 --~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 --SEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred --cHHHHHHHhc--cCCEEEEeCCCCC
Confidence 1122333343 3458889999654
No 217
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.014 Score=68.47 Aligned_cols=156 Identities=15% Similarity=0.166 Sum_probs=91.2
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCC-----CEEEE-EEeCCCCCHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPF-----DKVIF-VRVTQTPDVKRVQ 139 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f-----~~~~w-v~~~~~~~~~~~~ 139 (977)
..+.+++||++++.++++.|.....+ --.++|.+|||||++|.-++.+ ...- +..++ .+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KN--NPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD----------- 233 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKN--NPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLD----------- 233 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCC--CCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEec-----------
Confidence 34557899999999999999764422 2357899999999999888777 2211 11222 21
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--------cc--ccccCCCCCCCCeEEEEecCChH
Q 002037 140 DEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--------LA--VVGIPYGEEHKGCKIILTSRFKE 209 (977)
Q Consensus 140 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--------~~--~l~~~~~~~~~gs~iivTtR~~~ 209 (977)
+..-+....-...-+++...+.+.+++.++..|++|.+..... .+ .+..|-...+.--.|-.||-++.
T Consensus 234 --~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~EY 311 (786)
T COG0542 234 --LGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDEY 311 (786)
T ss_pred --HHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHHH
Confidence 1111111111223345555666666655699999999865411 22 12222222233345666775442
Q ss_pred H------HhhccCCceEEccCCCHHHHHHHHHHhc
Q 002037 210 V------CDEMESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 210 v------~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
- +.....-+.+.+...+.+++..++....
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 1 1111223578899999999999987554
No 218
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.75 E-value=0.053 Score=58.60 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=55.7
Q ss_pred cceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCC-hHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCC
Q 002037 169 QKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRF-KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGT 244 (977)
Q Consensus 169 ~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~ 244 (977)
+++-++|+|+++.. ....++...+-...+++.+|++|.+ ..+...+ ..-..+.+.+++.++..+.+... + ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~-~-~~-- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ-G-VA-- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc-C-CC--
Confidence 55668888998865 2334444344344456655555554 4443322 22368999999999999988775 2 11
Q ss_pred hhhHHHHHHHHHHhCCChhHHHHH
Q 002037 245 KAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 245 ~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
. ...++..++|.|+.+..+
T Consensus 207 -~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 -D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred -h----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755443
No 219
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.74 E-value=0.012 Score=71.91 Aligned_cols=176 Identities=13% Similarity=0.124 Sum_probs=91.6
Q ss_pred CcccccchHHHHHHHHHHhhcC-----------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDN-----------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~ 136 (977)
.+..+.|.++.++++.+.+.-. -...+-|.++|+.|+|||++|+.+++. ...| +.++.+.
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~~~~----- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISINGPE----- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEecHH-----
Confidence 3445778888888877665311 012457889999999999999999988 4332 2222111
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------ccccccCCCC-CCCCeEEE
Q 002037 137 RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGIPYGE-EHKGCKII 202 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~-~~~gs~ii 202 (977)
+. .. ..+.. ......+.+......+.+|++|+++.... ...+...+.. ...+..++
T Consensus 248 -i~----~~----~~g~~-~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~viv 317 (733)
T TIGR01243 248 -IM----SK----YYGES-EERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIV 317 (733)
T ss_pred -Hh----cc----cccHH-HHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEE
Confidence 10 00 00111 11122222233335678999999864310 0111111111 12233344
Q ss_pred E-ecCChH-HHhhc----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 203 L-TSRFKE-VCDEM----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 203 v-TtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
| ||...+ +...+ .-...+.+...+.++-.+++..+.....-. .......+++.+.|.--|
T Consensus 318 I~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~--~d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 318 IGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA--EDVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc--cccCHHHHHHhCCCCCHH
Confidence 4 554433 21111 123467888889999888888665321111 112356778888886533
No 220
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.025 Score=63.06 Aligned_cols=183 Identities=13% Similarity=0.147 Sum_probs=95.4
Q ss_pred CcccccchHHHHHHHHHHhhc---CC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKD---NS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 137 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~---~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~ 137 (977)
.+..+-|-+..+.++.+++.- .. ...+=|.++|++|+|||.||+++++. .-.| +.++.+
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF-----LSISAP----- 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCce-----Eeecch-----
Confidence 355566777777776665422 11 23567899999999999999999998 4443 333322
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc---cc-----c-----cc---ccCCCC---CCCC
Q 002037 138 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL---DL-----A-----VV---GIPYGE---EHKG 198 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~-----~-----~l---~~~~~~---~~~g 198 (977)
+|.... .+.+ +.....+.+.-...-++++++|+++... ++ + ++ ...+.. .+.+
T Consensus 258 ---eivSGv----SGES-EkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 258 ---EIVSGV----SGES-EKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred ---hhhccc----Cccc-HHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 111111 1111 2233334444445789999999986431 11 0 11 111111 1223
Q ss_pred eEEEE-ecCChHHH---hhc-cCCceEEccCCCHHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHhCCC----hhHHHH
Q 002037 199 CKIIL-TSRFKEVC---DEM-ESTNYVQVEELTDEDRLILFKKKAGL--PEGTKAFDRAAEEVVRQCGKL----PNAIVI 267 (977)
Q Consensus 199 s~iiv-TtR~~~v~---~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~gl----PLai~~ 267 (977)
--||- |+|-..+- +.. .-++.|.+.--+++.-.+++...+.+ ....-++ ++|++..-|. -.|+..
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~----~qlA~lTPGfVGADL~AL~~ 405 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDF----KQLAKLTPGFVGADLMALCR 405 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCH----HHHHhcCCCccchhHHHHHH
Confidence 33333 44544331 211 22356777777777777777766541 2222333 4455555443 345555
Q ss_pred HHHHhc
Q 002037 268 IGTALR 273 (977)
Q Consensus 268 ~~~~l~ 273 (977)
.|+..+
T Consensus 406 ~Aa~vA 411 (802)
T KOG0733|consen 406 EAAFVA 411 (802)
T ss_pred HHHHHH
Confidence 555444
No 221
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.72 E-value=0.0011 Score=64.80 Aligned_cols=72 Identities=29% Similarity=0.404 Sum_probs=42.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccce
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 171 (977)
..-+.++|..|+|||.||.++.+. .+.+ .+.|+++ .+++..+.. ...... ...+.+.+. +-
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~~------~~L~~~l~~----~~~~~~----~~~~~~~l~--~~ 109 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFITA------SDLLDELKQ----SRSDGS----YEELLKRLK--RV 109 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH------HHHHHHHHC----CHCCTT----HCHHHHHHH--TS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEeec------Cceeccccc----cccccc----hhhhcCccc--cc
Confidence 357999999999999999999988 4333 4566643 344444322 211111 112233443 34
Q ss_pred EEEEecCcccc
Q 002037 172 VLIILDDLWGK 182 (977)
Q Consensus 172 ~LlvlDdv~~~ 182 (977)
=||||||+...
T Consensus 110 dlLilDDlG~~ 120 (178)
T PF01695_consen 110 DLLILDDLGYE 120 (178)
T ss_dssp SCEEEETCTSS
T ss_pred cEeccccccee
Confidence 58889998654
No 222
>PRK09183 transposase/IS protein; Provisional
Probab=96.66 E-value=0.0023 Score=66.85 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+.|+|+.|+|||+||..+++.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 36889999999999999999877
No 223
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.66 E-value=0.0087 Score=65.68 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=79.3
Q ss_pred ccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-c-C--------------------CCCEEEEEEeC
Q 002037 73 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-E-I--------------------PFDKVIFVRVT 130 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~-~--------------------~f~~~~wv~~~ 130 (977)
+++-+....++..+..........+.++|+.|+||||+|..+++. . . ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 445566777777777644323446999999999999999999988 1 1 12345555555
Q ss_pred CCCC---HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--ccccccCCCCCCCCeEEEEec
Q 002037 131 QTPD---VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--LAVVGIPYGEEHKGCKIILTS 205 (977)
Q Consensus 131 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTt 205 (977)
.... ..+..+++++....... .++.-++|+|+++.... ..++....-.....+++|++|
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 5444 23334444443322111 26788999999987622 233333333445677788877
Q ss_pred CCh-HHHhhc-cCCceEEccC
Q 002037 206 RFK-EVCDEM-ESTNYVQVEE 224 (977)
Q Consensus 206 R~~-~v~~~~-~~~~~~~l~~ 224 (977)
... .+...+ .....+++++
T Consensus 147 n~~~~il~tI~SRc~~i~f~~ 167 (325)
T COG0470 147 NDPSKILPTIRSRCQRIRFKP 167 (325)
T ss_pred CChhhccchhhhcceeeecCC
Confidence 743 222211 1124566666
No 224
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.012 Score=66.77 Aligned_cols=149 Identities=16% Similarity=0.090 Sum_probs=83.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCC--CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHcc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP--DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ 169 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 169 (977)
..-|.|.|..|+|||+||+++++. ++..-.+.+++++.-. ..+.+++.+-..+ .+.+. .
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vf----------------se~~~-~ 493 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVF----------------SEALW-Y 493 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHH----------------HHHHh-h
Confidence 447899999999999999999998 5666677778777532 3444444332221 12222 5
Q ss_pred ceEEEEecCcccc--------cccc-----------ccccCCCCCCCCeEEEEecCChHHHhh-c----cCCceEEccCC
Q 002037 170 KRVLIILDDLWGK--------LDLA-----------VVGIPYGEEHKGCKIILTSRFKEVCDE-M----ESTNYVQVEEL 225 (977)
Q Consensus 170 ~~~LlvlDdv~~~--------~~~~-----------~l~~~~~~~~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L 225 (977)
.+-+|||||++-. .+|. ++...+...+..-++|.|.....-... + -......++.+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 7899999998632 1121 111111111222244555554432211 1 11235678888
Q ss_pred CHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCC
Q 002037 226 TDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK 260 (977)
Q Consensus 226 ~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 260 (977)
..++-.++++........ ....+...-+..+|+|
T Consensus 574 ~~~~R~~IL~~~~s~~~~-~~~~~dLd~ls~~TEG 607 (952)
T KOG0735|consen 574 AVTRRKEILTTIFSKNLS-DITMDDLDFLSVKTEG 607 (952)
T ss_pred chhHHHHHHHHHHHhhhh-hhhhHHHHHHHHhcCC
Confidence 888887777665532111 1122223337777877
No 225
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.63 E-value=0.012 Score=60.66 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=36.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCC------CEEEEEEeCCCCCHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF------DKVIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f------~~~~wv~~~~~~~~~~~~ 139 (977)
-.++.|+|.+|+|||++|.+++.. ...- ..++|++....++..++.
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH
Confidence 459999999999999999998876 3333 678999988877765554
No 226
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.26 Score=53.80 Aligned_cols=169 Identities=16% Similarity=0.147 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhc
Q 002037 77 LEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTE 149 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~ 149 (977)
++.++++.+.+...+ .=-|=..++|++|.|||+++.++++.-+ || ++=+..+.-.+-.+
T Consensus 211 ~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~-yd-IydLeLt~v~~n~d------------ 276 (457)
T KOG0743|consen 211 ERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLN-YD-IYDLELTEVKLDSD------------ 276 (457)
T ss_pred HHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcC-Cc-eEEeeeccccCcHH------------
Confidence 344455555554432 1134568999999999999999998711 22 11122222111111
Q ss_pred cccchHHHHHHHHHHHHH-ccceEEEEecCccccccc-----------cc---------cccCC--CCCCC-CeEE-EEe
Q 002037 150 LEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKLDL-----------AV---------VGIPY--GEEHK-GCKI-ILT 204 (977)
Q Consensus 150 ~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~~-----------~~---------l~~~~--~~~~~-gs~i-ivT 204 (977)
+++.|. ...+-+||+.|++-..+. .. +...+ .+.+. +-|| |.|
T Consensus 277 ------------Lr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFT 344 (457)
T KOG0743|consen 277 ------------LRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFT 344 (457)
T ss_pred ------------HHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEe
Confidence 122221 345677777777643111 00 00001 11122 2355 557
Q ss_pred cCChHHH-----hhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHH-HhcCC
Q 002037 205 SRFKEVC-----DEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGT-ALRHK 275 (977)
Q Consensus 205 tR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~-~l~~~ 275 (977)
|...+-. +.-..+..+.+.-=+.+.-..|+..+.+..+++ .+..+|.+...|.-+.=..+|. +|..+
T Consensus 345 TNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 345 TNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 7665442 211233567888889999999999998743333 3445555555555444444444 44444
No 227
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.62 E-value=0.0099 Score=62.05 Aligned_cols=111 Identities=19% Similarity=0.145 Sum_probs=65.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEE---eCCCCCHHHHHHHHHHHhhh--------ccccchHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVR---VTQTPDVKRVQDEIARFLNT--------ELEGDVEVLRAAFL 162 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~---~~~~~~~~~~~~~i~~~l~~--------~~~~~~~~~~~~~l 162 (977)
..-++|+|..|.||||+++.++..-....+.+++. +....+. .+++..... .............+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~----~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~ 186 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDER----SEIAGCVNGVPQHDVGIRTDVLDGCPKAEGM 186 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhH----HHHHHHhcccccccccccccccccchHHHHH
Confidence 67899999999999999999998844444444442 2211111 233322211 11111111223334
Q ss_pred HHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHH
Q 002037 163 SERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVC 211 (977)
Q Consensus 163 ~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~ 211 (977)
...+....+=++++|++.....+..+...+ ..|..||+||.+..+.
T Consensus 187 ~~~i~~~~P~villDE~~~~e~~~~l~~~~---~~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 187 MMLIRSMSPDVIVVDEIGREEDVEALLEAL---HAGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHhCCCCEEEEeCCCcHHHHHHHHHHH---hCCCEEEEEechhHHH
Confidence 444444578899999987766555554443 2477899999987663
No 228
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.62 E-value=0.0015 Score=59.61 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|++|+||||+|+.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 229
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.61 E-value=0.006 Score=75.01 Aligned_cols=106 Identities=17% Similarity=0.255 Sum_probs=59.7
Q ss_pred cccchHHHHHHHHHHhhc-------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 72 PLKSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
.++|.++.++.+...+.. .+....++.++|+.|+|||++|+.+++. ...-...+-++++.-.+... +.
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~----~~ 585 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT----VS 585 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccccc----HH
Confidence 367888888888887742 1222456789999999999999999987 22223344555554322111 11
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
+.++.. ++.........+.+.++....-+++||+++..
T Consensus 586 ~l~g~~-~gyvg~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 586 KLIGSP-PGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred HhcCCC-CcccCcCccchHHHHHHhCCCeEEEECChhhC
Confidence 112211 11000011123344444344568999999765
No 230
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.016 Score=66.08 Aligned_cols=156 Identities=16% Similarity=0.225 Sum_probs=86.1
Q ss_pred ccchHHHHHHHHHHhh----cCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLK----DNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
-+|-++.++++++.|. .....-.++.++|++|||||+|++.+++- .+.| +-+++..-.|..++...=-..+|
T Consensus 325 HYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf---vR~sLGGvrDEAEIRGHRRTYIG 401 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF---VRISLGGVRDEAEIRGHRRTYIG 401 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE---EEEecCccccHHHhccccccccc
Confidence 4677888888887662 12222369999999999999999999998 5555 23455554444433211000111
Q ss_pred hccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------cc--------ccccCCCCC-CCCeEE--EEecC
Q 002037 148 TELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------LA--------VVGIPYGEE-HKGCKI--ILTSR 206 (977)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------~~--------~l~~~~~~~-~~gs~i--ivTtR 206 (977)
.-.-...+.+++. +.++=+++||.|+.... ++ .+...+... --=|.| |.|..
T Consensus 402 -----amPGrIiQ~mkka--~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 402 -----AMPGKIIQGMKKA--GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred -----cCChHHHHHHHHh--CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence 0011111111111 35677899999875410 11 111111110 011333 33333
Q ss_pred ChH-H-HhhccCCceEEccCCCHHHHHHHHHHhc
Q 002037 207 FKE-V-CDEMESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 207 ~~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
+-+ + +..+....++++.+-+++|-.++-+++.
T Consensus 475 sl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 475 SLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred ccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 333 2 3334555789999999999999888776
No 231
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.56 E-value=0.0065 Score=64.90 Aligned_cols=116 Identities=14% Similarity=0.223 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHhhcCC--CceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcc
Q 002037 75 SALEVIKSVMKLLKDNS--ISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL 150 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 150 (977)
+|...+....+++..-. ...+-+.|+|..|+|||.||.++++. ...+. +.++++. .+..++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~-v~~~~~~------~l~~~lk~~~~~-- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS-STLLHFP------EFIRELKNSISD-- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC-EEEEEHH------HHHHHHHHHHhc--
Confidence 45555555555554321 12467999999999999999999999 33333 5566443 444555444321
Q ss_pred ccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccc--cccCC-CCC-CCCeEEEEecCC
Q 002037 151 EGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAV--VGIPY-GEE-HKGCKIILTSRF 207 (977)
Q Consensus 151 ~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~--l~~~~-~~~-~~gs~iivTtR~ 207 (977)
.+ .....+.+ .+-=||||||+... .+|.. +...+ ... ..+-.+|+||.-
T Consensus 206 --~~----~~~~l~~l--~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 --GS----VKEKIDAV--KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred --Cc----HHHHHHHh--cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 11222333 25669999999644 34432 22222 111 234557888863
No 232
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.56 E-value=0.017 Score=59.42 Aligned_cols=45 Identities=27% Similarity=0.367 Sum_probs=35.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~ 139 (977)
-.++.|+|.+|+|||++|.+++.. ...-..++|++.. .++..++.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e-~~~~~r~~ 68 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE-GLSPERFK 68 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC-CCCHHHHH
Confidence 459999999999999999999887 3445678999887 56655543
No 233
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.56 E-value=0.012 Score=70.47 Aligned_cols=102 Identities=15% Similarity=0.261 Sum_probs=58.5
Q ss_pred ccchHHHHHHHHHHhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
++|.++.++.+...+... +.....+.++|+.|+|||++|+.++.. ... .+.++++.-.+.. .+.+
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~id~se~~~~~----~~~~ 532 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFDMSEYMERH----TVSR 532 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCC---cEEeechhhcccc----cHHH
Confidence 578888888888877521 222457899999999999999999887 322 3344444322111 1222
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
-++.... .........+.+.+.+...-+++||+++..
T Consensus 533 LiG~~~g-yvg~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 533 LIGAPPG-YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HcCCCCC-cccccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2232111 100011122333344345579999999865
No 234
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.54 E-value=0.045 Score=56.80 Aligned_cols=168 Identities=22% Similarity=0.204 Sum_probs=97.6
Q ss_pred cccchHHHHHHHHHHhhcCC--CceeEEEEEcCCCChHHHHHHHHHhhcCCCCEE-EEEEeCCCCCH-HHHHHHHHHHhh
Q 002037 72 PLKSALEVIKSVMKLLKDNS--ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKV-IFVRVTQTPDV-KRVQDEIARFLN 147 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~-~wv~~~~~~~~-~~~~~~i~~~l~ 147 (977)
.+.|-.++-.++-.++...- +....|.|+|+.|.|||+|......+.+.|... +-|...+..-. +-.++.|.+++.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 45566666666666554311 114578999999999999998877774455433 33445444322 335566777665
Q ss_pred hccc-----cchHHHHHHHHHHHHHc-----cceEEEEecCcccccc-------ccccccCCCCCCCCeEEEEecCChHH
Q 002037 148 TELE-----GDVEVLRAAFLSERLKR-----QKRVLIILDDLWGKLD-------LAVVGIPYGEEHKGCKIILTSRFKEV 210 (977)
Q Consensus 148 ~~~~-----~~~~~~~~~~l~~~l~~-----~~~~LlvlDdv~~~~~-------~~~l~~~~~~~~~gs~iivTtR~~~v 210 (977)
.+.. ..+-.+...++.+.|+. +.++++|+|+++.-.. +.-+...-....|-+-|-+|||-...
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 4322 12223445556666652 4568999988764311 11111111234677889999997643
Q ss_pred -------HhhccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 211 -------CDEMESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 211 -------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
-....-..++-++.++-++-..++++...
T Consensus 185 E~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 185 ELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred HHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 12222223566677888888888877663
No 235
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.53 E-value=0.062 Score=54.16 Aligned_cols=226 Identities=13% Similarity=0.174 Sum_probs=117.8
Q ss_pred ccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-------cCCCCEEEEEEeCCC----------C
Q 002037 71 VPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-------EIPFDKVIFVRVTQT----------P 133 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-------~~~f~~~~wv~~~~~----------~ 133 (977)
....++++.-..+......++ .+-..++|+.|.||-|.+..+.+. +-+-+...|.+-+.. .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d--~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGD--FPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcccCC--CCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 345666666666666555454 788999999999999998877766 112334455433321 0
Q ss_pred -----------CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE-EEEecCcccc--ccccccccCCCCCCCCe
Q 002037 134 -----------DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV-LIILDDLWGK--LDLAVVGIPYGEEHKGC 199 (977)
Q Consensus 134 -----------~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~--~~~~~l~~~~~~~~~gs 199 (977)
.-+.+.++|++......+-+. ...+.| ++|+-.++.. +...++....-.-...+
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 112233344443332211100 012333 4455444432 11112211111123455
Q ss_pred EEEEecCChH-H-HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhc--C-
Q 002037 200 KIILTSRFKE-V-CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALR--H- 274 (977)
Q Consensus 200 ~iivTtR~~~-v-~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~--~- 274 (977)
|+|+.-.+-+ + ...-..--.++++..+++|....+++.+.... -.--.+++.+|+++++|.---...+-..++ +
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~-l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG-LQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc-ccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 6655332211 1 11111113678999999999999998876222 222278899999999996533333333332 1
Q ss_pred --------CChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccc
Q 002037 275 --------KPVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQL 313 (977)
Q Consensus 275 --------~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L 313 (977)
.+.-+|+-++.++...-..+ ..+..+.++-..=|+-|
T Consensus 238 ~~~a~~~~i~~~dWe~~i~e~a~~i~~e--Qs~~~L~~vR~~LYeLL 282 (351)
T KOG2035|consen 238 PFTANSQVIPKPDWEIYIQEIARVILKE--QSPAKLLEVRGRLYELL 282 (351)
T ss_pred cccccCCCCCCccHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHH
Confidence 13458999888766542211 11144555555555544
No 236
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.53 E-value=0.054 Score=53.94 Aligned_cols=171 Identities=18% Similarity=0.239 Sum_probs=97.2
Q ss_pred ccccchHHHHHH---HHHHhhcCC----CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 71 VPLKSALEVIKS---VMKLLKDNS----ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 71 ~~~~gr~~~~~~---l~~~l~~~~----~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
..++|.++.+.+ |++.|.+.. =..+-|..+|++|.|||.+|+++++. +-.| +.|. ...-|
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~vk-------at~li 188 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LLVK-------ATELI 188 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EEec-------hHHHH
Confidence 356777665543 445554432 13678999999999999999999998 4433 1111 12223
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc----------cc----ccccccCCC--CCCCCeEEEEecC
Q 002037 143 ARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK----------LD----LAVVGIPYG--EEHKGCKIILTSR 206 (977)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~----------~~----~~~l~~~~~--~~~~gs~iivTtR 206 (977)
.+..+. .......+.++-++.-++.+.+|.++.. .+ ..++...+. ..+.|-..|-.|.
T Consensus 189 GehVGd------gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN 262 (368)
T COG1223 189 GEHVGD------GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATN 262 (368)
T ss_pred HHHhhh------HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecC
Confidence 333321 1223444455555567899999987643 11 111211111 2345666777777
Q ss_pred ChHHHhhc---cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCC
Q 002037 207 FKEVCDEM---ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL 261 (977)
Q Consensus 207 ~~~v~~~~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl 261 (977)
+.++.... .-...|+..--+++|-.+++..++..-.- + .+.-.+.++++.+|.
T Consensus 263 ~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl-p-v~~~~~~~~~~t~g~ 318 (368)
T COG1223 263 RPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL-P-VDADLRYLAAKTKGM 318 (368)
T ss_pred ChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC-c-cccCHHHHHHHhCCC
Confidence 77664321 22246777777889999998888752111 1 111155666677664
No 237
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.53 E-value=0.0099 Score=59.06 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=40.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhhcc
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTEL 150 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~ 150 (977)
++|.++|+.|+||||.+-+++.. ...-..+..++.... ....+-++..++.++...
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~ 59 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPF 59 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcccc
Confidence 68999999999999999888887 333446777776543 244566677788887653
No 238
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0069 Score=66.13 Aligned_cols=154 Identities=20% Similarity=0.205 Sum_probs=84.3
Q ss_pred CCcccccchHHHHHHHHHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~ 139 (977)
.+..|.+.-.++++++++.|.+.. .=.+=|.++|++|.|||-||++++.. .-.| |......|+..-+
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPF----F~~sGSEFdEm~V- 378 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPF----FYASGSEFDEMFV- 378 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCe----Eeccccchhhhhh-
Confidence 334455556678888999887753 12567899999999999999999987 3332 2333333331111
Q ss_pred HHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc-------------cccccccCCCCC--CCCeEEEEe
Q 002037 140 DEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL-------------DLAVVGIPYGEE--HKGCKIILT 204 (977)
Q Consensus 140 ~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~~~~l~~~~~~~--~~gs~iivT 204 (977)
-. -..+...+...-+..-+++|++|+++... .+.++...+..+ ..|--||-.
T Consensus 379 -----Gv--------GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigA 445 (752)
T KOG0734|consen 379 -----GV--------GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGA 445 (752)
T ss_pred -----cc--------cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEec
Confidence 00 01122333333345678999999986431 122222222222 335555556
Q ss_pred cCChHHHhh-c----cCCceEEccCCCHHHHHHHHHHhcC
Q 002037 205 SRFKEVCDE-M----ESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 205 tR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
|..++.... + .-+..+.++.-+..--.++|..+..
T Consensus 446 TNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 446 TNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLS 485 (752)
T ss_pred cCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHh
Confidence 665554322 1 1224555555555555556655543
No 239
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.52 E-value=0.026 Score=69.02 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=36.0
Q ss_pred ccchHHHHHHHHHHhhc----CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 73 LKSALEVIKSVMKLLKD----NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
++|.++.++.+.+.+.. ....-.++.++|++|+|||++|+.+++. ...|
T Consensus 322 ~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 322 HYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred cCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 56777777777765431 1222358999999999999999999998 5444
No 240
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.49 E-value=0.007 Score=64.41 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=54.6
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHH
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSER 165 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 165 (977)
.-+++-|+|++|+||||||.+++.. ...-..++||+....++.. .++.++.... ....+.....+...
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~~l 128 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAETL 128 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 3469999999999999999998877 4444567899887766653 2444432211 11222333344444
Q ss_pred HHccceEEEEecCcccc
Q 002037 166 LKRQKRVLIILDDLWGK 182 (977)
Q Consensus 166 l~~~~~~LlvlDdv~~~ 182 (977)
.+.+..-++|+|.|...
T Consensus 129 i~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 129 VRSGAVDIIVVDSVAAL 145 (321)
T ss_pred hhccCCcEEEEcchhhh
Confidence 44566779999998643
No 241
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.48 E-value=0.0084 Score=69.59 Aligned_cols=48 Identities=25% Similarity=0.360 Sum_probs=38.8
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+..++|++..++.+...+.... ..-|.|+|..|+|||++|+.+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~--~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPN--PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCC--CceEEEECCCCCCHHHHHHHHHHH
Confidence 445678899999988887765544 456789999999999999999865
No 242
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.48 E-value=0.14 Score=56.07 Aligned_cols=41 Identities=22% Similarity=0.451 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcCC-CceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 77 LEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
....+.+.+.+.+.+ ....+|+|.|.=|+||||+.+.+.+.
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344566667676543 45789999999999999999999988
No 243
>PRK06696 uridine kinase; Validated
Probab=96.43 E-value=0.0045 Score=63.40 Aligned_cols=43 Identities=21% Similarity=0.258 Sum_probs=35.3
Q ss_pred chHHHHHHHHHHhhc-CCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 75 SALEVIKSVMKLLKD-NSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 75 gr~~~~~~l~~~l~~-~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|.+.+++|.+.+.. ......+|+|.|.+|+||||+|+.++..
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 467778888887754 2334789999999999999999999987
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.38 E-value=0.014 Score=56.56 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=31.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCC
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 134 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~ 134 (977)
++.|+|.+|+||||+|..++.. ...-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchH
Confidence 4789999999999999999988 44446788888776543
No 245
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.38 E-value=0.0081 Score=63.95 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=54.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHH
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSER 165 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 165 (977)
.-+++-|+|++|+||||||.+++.. ...-..++||+....++.. .++.++...+ ..+.++....+...
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~~l 128 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIADSL 128 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHHHH
Confidence 3468899999999999999998876 4444678899888776653 2333332211 11222233334344
Q ss_pred HHccceEEEEecCccc
Q 002037 166 LKRQKRVLIILDDLWG 181 (977)
Q Consensus 166 l~~~~~~LlvlDdv~~ 181 (977)
.+.+..-++|+|.|..
T Consensus 129 i~s~~~~lIVIDSvaa 144 (325)
T cd00983 129 VRSGAVDLIVVDSVAA 144 (325)
T ss_pred HhccCCCEEEEcchHh
Confidence 4456677999999764
No 246
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.057 Score=54.76 Aligned_cols=150 Identities=18% Similarity=0.242 Sum_probs=79.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccce
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 171 (977)
..+-|.++|++|.||+.||++|+.. ... |.+||...-+. ..++. .+.....+.+.-+.+|+
T Consensus 165 PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFSvSSSDLvS-------KWmGE------SEkLVknLFemARe~kP 226 (439)
T KOG0739|consen 165 PWRGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSSDLVS-------KWMGE------SEKLVKNLFEMARENKP 226 (439)
T ss_pred cceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEEeehHHHHH-------HHhcc------HHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999988 332 34454431111 11111 12233344444456899
Q ss_pred EEEEecCccccc------c---cccc----ccC---CCCCCCCeEEEEecCChHHHhhc---cCCceEEccCCCHHHHH-
Q 002037 172 VLIILDDLWGKL------D---LAVV----GIP---YGEEHKGCKIILTSRFKEVCDEM---ESTNYVQVEELTDEDRL- 231 (977)
Q Consensus 172 ~LlvlDdv~~~~------~---~~~l----~~~---~~~~~~gs~iivTtR~~~v~~~~---~~~~~~~l~~L~~~~~~- 231 (977)
-+|++|.|+..- + -..+ ... ......|--|+-.|..+-+.... .-...|-+ ||.+..|+
T Consensus 227 SIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~AR~ 305 (439)
T KOG0739|consen 227 SIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAHARA 305 (439)
T ss_pred cEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHHHhh
Confidence 999999997430 0 1111 111 12233455566677776553321 11122333 44445554
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 232 ILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 232 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
.+|.-++++. .+.-.++-.+++.++..|.-
T Consensus 306 ~MF~lhlG~t-p~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 306 RMFKLHLGDT-PHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred hhheeccCCC-ccccchhhHHHHHhhcCCCC
Confidence 5676666622 12222333456666666643
No 247
>PRK09354 recA recombinase A; Provisional
Probab=96.37 E-value=0.0091 Score=64.09 Aligned_cols=85 Identities=19% Similarity=0.256 Sum_probs=56.1
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHH
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSER 165 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 165 (977)
.-+++-|+|+.|+||||||.+++.. ...-..++||+....++.. .++.++.... ....+.....+...
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~~l 133 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIADTL 133 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHH
Confidence 3568999999999999999998877 4444678999988877753 3444443211 11222333344444
Q ss_pred HHccceEEEEecCcccc
Q 002037 166 LKRQKRVLIILDDLWGK 182 (977)
Q Consensus 166 l~~~~~~LlvlDdv~~~ 182 (977)
++.++.-++|+|.|...
T Consensus 134 i~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 134 VRSGAVDLIVVDSVAAL 150 (349)
T ss_pred hhcCCCCEEEEeChhhh
Confidence 45567779999998643
No 248
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.36 E-value=0.0086 Score=68.10 Aligned_cols=75 Identities=23% Similarity=0.333 Sum_probs=55.4
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.-++..++|++|+||||||.-++++..+ .++=|++|+.-+...+-..|...+....... ..+++.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaGY--sVvEINASDeRt~~~v~~kI~~avq~~s~l~-------------adsrP~ 389 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAGY--SVVEINASDERTAPMVKEKIENAVQNHSVLD-------------ADSRPV 389 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcCc--eEEEecccccccHHHHHHHHHHHHhhccccc-------------cCCCcc
Confidence 4679999999999999999999987332 4677888988887777776666554321110 136788
Q ss_pred EEEecCcccc
Q 002037 173 LIILDDLWGK 182 (977)
Q Consensus 173 LlvlDdv~~~ 182 (977)
-||+|+++..
T Consensus 390 CLViDEIDGa 399 (877)
T KOG1969|consen 390 CLVIDEIDGA 399 (877)
T ss_pred eEEEecccCC
Confidence 8999999865
No 249
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.28 E-value=0.028 Score=68.08 Aligned_cols=156 Identities=15% Similarity=0.217 Sum_probs=83.6
Q ss_pred ccchHHHHHHHHHHhhc----CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLKD----NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
.+|.++.++.+++++.. +...-.++.++|++|+||||+|+.++.. ...|- -++.+...+...+...-....+
T Consensus 324 ~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~---~i~~~~~~d~~~i~g~~~~~~g 400 (784)
T PRK10787 324 HYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV---RMALGGVRDEAEIRGHRRTYIG 400 (784)
T ss_pred ccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEEcCCCCCHHHhccchhccCC
Confidence 67888888888877642 1122458999999999999999999987 44432 2334443333322211111111
Q ss_pred hccccchHHHHHHHHHHHHHccceEEEEecCcccccc------ccccccCCCC---------------CCCCeEEEEecC
Q 002037 148 TELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD------LAVVGIPYGE---------------EHKGCKIILTSR 206 (977)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~------~~~l~~~~~~---------------~~~gs~iivTtR 206 (977)
...+ .....+.. . ....-+++||+++.... ...+...+.+ .-.+.-+|.||.
T Consensus 401 -~~~G----~~~~~l~~-~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN 473 (784)
T PRK10787 401 -SMPG----KLIQKMAK-V-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSN 473 (784)
T ss_pred -CCCc----HHHHHHHh-c-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCC
Confidence 0111 11111111 1 11344788999875421 1112111111 113444556665
Q ss_pred ChHHHhh-ccCCceEEccCCCHHHHHHHHHHhc
Q 002037 207 FKEVCDE-MESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 207 ~~~v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
...+... .+...++++.+++.+|-.++..++.
T Consensus 474 ~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 474 SMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred CCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 5433111 1223578999999999988887775
No 250
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.26 E-value=0.02 Score=59.52 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=46.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
..-+.++|.+|+|||.||.++.+. .+.--.+.+++ ..++..++...... +. ....+...+. +-=
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~------~~el~~~Lk~~~~~---~~----~~~~l~~~l~--~~d 169 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT------APDLLSKLKAAFDE---GR----LEEKLLRELK--KVD 169 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHHhc---Cc----hHHHHHHHhh--cCC
Confidence 458999999999999999999999 42223455553 34455555544432 11 1122233232 445
Q ss_pred EEEecCcccc
Q 002037 173 LIILDDLWGK 182 (977)
Q Consensus 173 LlvlDdv~~~ 182 (977)
||||||+...
T Consensus 170 lLIiDDlG~~ 179 (254)
T COG1484 170 LLIIDDIGYE 179 (254)
T ss_pred EEEEecccCc
Confidence 9999998653
No 251
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.046 Score=63.62 Aligned_cols=150 Identities=20% Similarity=0.154 Sum_probs=82.3
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccce
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 171 (977)
..+.+.++|++|.|||.||+++++. ...|-.+.+-.+... . -+.+ +.....+...-++..+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk------------~-----vGes-ek~ir~~F~~A~~~~p 336 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSK------------W-----VGES-EKNIRELFEKARKLAP 336 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhcc------------c-----cchH-HHHHHHHHHHHHcCCC
Confidence 3568999999999999999999997 555533322111110 0 0111 1112222222224688
Q ss_pred EEEEecCcccccccc-------------ccccCCC--CCCCCeEEEEecCChHHHhh-----ccCCceEEccCCCHHHHH
Q 002037 172 VLIILDDLWGKLDLA-------------VVGIPYG--EEHKGCKIILTSRFKEVCDE-----MESTNYVQVEELTDEDRL 231 (977)
Q Consensus 172 ~LlvlDdv~~~~~~~-------------~l~~~~~--~~~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~ 231 (977)
..|++|+++....+. ++...+. ....+-.||-||...+.... ..-+..+.+++-+.++..
T Consensus 337 ~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~ 416 (494)
T COG0464 337 SIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERL 416 (494)
T ss_pred cEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHH
Confidence 999999987542211 1111111 22234445666655544221 122457889999999999
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHhCC
Q 002037 232 ILFKKKAGLPEGTKAFDRAAEEVVRQCGK 260 (977)
Q Consensus 232 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~g 260 (977)
++|+.+.......-...-....+++...|
T Consensus 417 ~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 417 EIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 99999886332221122234444544444
No 252
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.012 Score=69.01 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=63.8
Q ss_pred ccchHHHHHHHHHHhhc-------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKD-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
++|.++.++.+.+.+.. .+..+.+....|+.|||||.||++++.. .+.=+..+-+++|+-... ..+.+
T Consensus 493 ViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek----HsVSr 568 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK----HSVSR 568 (786)
T ss_pred eeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH----HHHHH
Confidence 67899999999888743 2234678899999999999999999987 322244455555542221 22333
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceE-EEEecCcccc
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRV-LIILDDLWGK 182 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~-LlvlDdv~~~ 182 (977)
-+|.... ----+....+-+..+ .++| +|.||+|...
T Consensus 569 LIGaPPG-YVGyeeGG~LTEaVR-r~PySViLlDEIEKA 605 (786)
T COG0542 569 LIGAPPG-YVGYEEGGQLTEAVR-RKPYSVILLDEIEKA 605 (786)
T ss_pred HhCCCCC-CceeccccchhHhhh-cCCCeEEEechhhhc
Confidence 3443322 111111334444554 4666 8888999765
No 253
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.20 E-value=0.021 Score=59.08 Aligned_cols=88 Identities=18% Similarity=0.373 Sum_probs=54.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCC-CEEEEEEeCCCC-CHHHHHHHHHHHhhh--------ccccchH-----HHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPF-DKVIFVRVTQTP-DVKRVQDEIARFLNT--------ELEGDVE-----VLR 158 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f-~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~~~-----~~~ 158 (977)
+.++|.|..|+||||||+.+++. ..+| +.++++-+.+.. .+.++.+++...-.. ..+.... ...
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~~ 149 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVALT 149 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 37899999999999999999998 5555 455666666543 455555555432111 0111111 111
Q ss_pred HHHHHHHHH-c-cceEEEEecCcccc
Q 002037 159 AAFLSERLK-R-QKRVLIILDDLWGK 182 (977)
Q Consensus 159 ~~~l~~~l~-~-~~~~LlvlDdv~~~ 182 (977)
+-.+-+++. + ++.+|+++||+...
T Consensus 150 a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 150 GLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 223334443 3 89999999998654
No 254
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.19 E-value=0.034 Score=59.60 Aligned_cols=54 Identities=24% Similarity=0.272 Sum_probs=41.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh---c----CCCCEEEEEEeCCCCCHHHHHHHHHHHhhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ---E----IPFDKVIFVRVTQTPDVKRVQDEIARFLNT 148 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~---~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 148 (977)
-+++-|+|.+|+|||++|.+++-. . ..=..++||+....|+.+++.+ +++.++.
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 458899999999999999887643 1 1124789999999998888754 5665543
No 255
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.18 E-value=0.053 Score=58.58 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+.+.++|+.|+||||+|+.++..
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~ 44 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQA 44 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHH
Confidence 557899999999999999999877
No 256
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.18 E-value=0.016 Score=60.68 Aligned_cols=53 Identities=23% Similarity=0.359 Sum_probs=41.6
Q ss_pred ccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh----cCCCCEEE
Q 002037 71 VPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPFDKVI 125 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~f~~~~ 125 (977)
-|+-+|..+-.--+++|.+++ +..|.+.|.+|.|||-||.+..=. ++.|..++
T Consensus 224 wGi~prn~eQ~~ALdlLld~d--I~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~Kii 280 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDD--IDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKII 280 (436)
T ss_pred hccCcccHHHHHHHHHhcCCC--CCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEE
Confidence 366778777777888888888 999999999999999999765433 56665443
No 257
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.17 E-value=0.023 Score=63.42 Aligned_cols=128 Identities=17% Similarity=0.258 Sum_probs=78.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
..=|.+||++|+|||-||++|+|. +..| ++|..+ +++.. .+| ..+.....+.++-+..-++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isVKGP----ELlNk---YVG------ESErAVR~vFqRAR~saPC 606 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISVKGP----ELLNK---YVG------ESERAVRQVFQRARASAPC 606 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCce-----EeecCH----HHHHH---Hhh------hHHHHHHHHHHHhhcCCCe
Confidence 456889999999999999999999 5555 444443 11111 111 1122234444555567899
Q ss_pred EEEecCccccc-------c------ccccccCCC--CCCCCeEEEEecCChHHHh--hc---cCCceEEccCCCHHHHHH
Q 002037 173 LIILDDLWGKL-------D------LAVVGIPYG--EEHKGCKIILTSRFKEVCD--EM---ESTNYVQVEELTDEDRLI 232 (977)
Q Consensus 173 LlvlDdv~~~~-------~------~~~l~~~~~--~~~~gs~iivTtR~~~v~~--~~---~~~~~~~l~~L~~~~~~~ 232 (977)
.|+||.++... . ..++...+. ....|--||-.|..+++.. .+ .-+...-+..-+.+|-.+
T Consensus 607 VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ 686 (802)
T KOG0733|consen 607 VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVA 686 (802)
T ss_pred EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHH
Confidence 99999987531 0 111211121 1235667787777776621 11 223466677788899999
Q ss_pred HHHHhcC
Q 002037 233 LFKKKAG 239 (977)
Q Consensus 233 lf~~~~~ 239 (977)
+++....
T Consensus 687 ILK~~tk 693 (802)
T KOG0733|consen 687 ILKTITK 693 (802)
T ss_pred HHHHHhc
Confidence 9988876
No 258
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.002 Score=64.29 Aligned_cols=35 Identities=31% Similarity=0.239 Sum_probs=15.0
Q ss_pred cCCCCCCEEEcCCCCCCCcc--ChhhhhcCccccEEE
Q 002037 531 GTVSNLKLLDLSNNLFLQVI--PPNVISKLSQLEELY 565 (977)
Q Consensus 531 ~~l~~L~~L~l~~~~~~~~~--p~~~i~~L~~L~~L~ 565 (977)
..+.+|..|++.+|..+... -..++.-+++|.+|+
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 34444555555555433211 012234455555554
No 259
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.14 E-value=0.038 Score=65.84 Aligned_cols=127 Identities=20% Similarity=0.233 Sum_probs=70.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 173 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 173 (977)
+-|.|+|++|+|||++|+.+++. ...| +.++.+. +.. + ..+ ... .....+........+.+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is~~~------~~~-~--~~g-----~~~-~~~~~~f~~a~~~~P~I 247 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGSD------FVE-M--FVG-----VGA-SRVRDMFEQAKKAAPCI 247 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEehHH------hHH-h--hhc-----ccH-HHHHHHHHHHHhcCCcE
Confidence 35899999999999999999987 4443 2222221 100 0 000 000 11111122223357789
Q ss_pred EEecCcccccc----------------ccccccCCC--CCCCCeEEEEecCChHHHhh-----ccCCceEEccCCCHHHH
Q 002037 174 IILDDLWGKLD----------------LAVVGIPYG--EEHKGCKIILTSRFKEVCDE-----MESTNYVQVEELTDEDR 230 (977)
Q Consensus 174 lvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~ 230 (977)
|++|+++.... ...+...+. ....+.-||.||...+.... -.-++.+.++..+.++-
T Consensus 248 ifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R 327 (644)
T PRK10733 248 IFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGR 327 (644)
T ss_pred EEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHH
Confidence 99999875411 011111111 11234556668877665221 12346788888898888
Q ss_pred HHHHHHhcC
Q 002037 231 LILFKKKAG 239 (977)
Q Consensus 231 ~~lf~~~~~ 239 (977)
.+++..+..
T Consensus 328 ~~Il~~~~~ 336 (644)
T PRK10733 328 EQILKVHMR 336 (644)
T ss_pred HHHHHHHhh
Confidence 888888775
No 260
>PRK06921 hypothetical protein; Provisional
Probab=96.14 E-value=0.018 Score=60.39 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCC-CCEEEEEEe
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIP-FDKVIFVRV 129 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~-f~~~~wv~~ 129 (977)
...+.++|..|+|||+||.++++. ... -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 457999999999999999999998 333 345677754
No 261
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.011 Score=67.03 Aligned_cols=99 Identities=18% Similarity=0.337 Sum_probs=62.0
Q ss_pred cccchHHHHHHHHHHhh----cCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002037 72 PLKSALEVIKSVMKLLK----DNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFL 146 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 146 (977)
+-+|-++.++++++.+- .++.+-+++..+|++|||||.+|+.++.- ...| +-++|..-.|+.++-..=-..+
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF---fRfSvGG~tDvAeIkGHRRTYV 488 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF---FRFSVGGMTDVAEIKGHRRTYV 488 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce---EEEeccccccHHhhcccceeee
Confidence 35678888888888763 22333569999999999999999999988 4444 2356676666555422111111
Q ss_pred hhccccchHHHHHHHHHHHHH--ccceEEEEecCcccc
Q 002037 147 NTELEGDVEVLRAAFLSERLK--RQKRVLIILDDLWGK 182 (977)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 182 (977)
+. . -.++.+.|+ +..+=|+.+|.|+..
T Consensus 489 GA-M--------PGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 489 GA-M--------PGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred cc-C--------ChHHHHHHHhhCCCCceEEeehhhhh
Confidence 10 0 123334443 245678889998754
No 262
>PRK07667 uridine kinase; Provisional
Probab=96.14 E-value=0.012 Score=58.79 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 80 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 80 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++.+.+.+........+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34566666665555689999999999999999999987
No 263
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.13 E-value=0.013 Score=57.51 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=29.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVR 128 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~ 128 (977)
..+|.+.|+.|+||||+|+.+++. ...+..+++++
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 459999999999999999999998 65666666663
No 264
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.09 E-value=0.039 Score=56.44 Aligned_cols=41 Identities=24% Similarity=0.323 Sum_probs=32.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 134 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~ 134 (977)
-.++.|.|.+|+||||+|.+++.. ...-..++|++....+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCH
Confidence 469999999999999999999877 33345678887765554
No 265
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.07 E-value=0.0096 Score=57.54 Aligned_cols=113 Identities=19% Similarity=0.158 Sum_probs=58.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCC--CCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ--TPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 173 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 173 (977)
+++|.|..|.|||||.+.++.......+.+++.-.. ..+..+. ..+.++...+-..-......+...+- .++-+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~---~~~~i~~~~qLS~G~~qrl~laral~-~~p~i 103 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDA---RRAGIAMVYQLSVGERQMVEIARALA-RNARL 103 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHH---HhcCeEEEEecCHHHHHHHHHHHHHh-cCCCE
Confidence 999999999999999999998855556666653211 1111111 11112111111111112222333333 46788
Q ss_pred EEecCcccccc---ccccccCCCC-CCCCeEEEEecCChHHHh
Q 002037 174 IILDDLWGKLD---LAVVGIPYGE-EHKGCKIILTSRFKEVCD 212 (977)
Q Consensus 174 lvlDdv~~~~~---~~~l~~~~~~-~~~gs~iivTtR~~~v~~ 212 (977)
+++|+-...-| ...+...+.. ...|..||++|.+.+...
T Consensus 104 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 104 LILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 89998654322 1111111111 123567888888876543
No 266
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.11 Score=51.45 Aligned_cols=191 Identities=15% Similarity=0.123 Sum_probs=97.9
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcC-----------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 65 IPTPEFVPLKSALEVIKSVMKLLKDN-----------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 65 ~~~~~~~~~~gr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
.|...+..+-|-++.++++++.+.-. -...+-|..+|++|.|||-+|++.+.+ ...|-.- ..
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKL-----Ag- 238 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKL-----AG- 238 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHh-----cc-
Confidence 44555666778888999998876211 023567889999999999999998877 4444110 00
Q ss_pred CCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc----------c------ccccccCCCCC-
Q 002037 133 PDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------D------LAVVGIPYGEE- 195 (977)
Q Consensus 133 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------~------~~~l~~~~~~~- 195 (977)
..-++--| + +. ..........-+...+.+|++|.++... + .-++...+..+
T Consensus 239 --PQLVQMfI----G-----dG-AkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 239 --PQLVQMFI----G-----DG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred --hHHHhhhh----c-----ch-HHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 00000000 0 00 0111111111234678999999875320 0 01122222222
Q ss_pred -CCCeEEEEecCChHHH-----hhccCCceEEccCCCHHHHHHHHHHhcC--CCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 196 -HKGCKIILTSRFKEVC-----DEMESTNYVQVEELTDEDRLILFKKKAG--LPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 196 -~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
...-+||..|..-++. ++-.-++.++.+--+++.-..+++-+.. ...++-+++++++.--..-|.--.|..+
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeeh
Confidence 2355778877665552 2222335566655555444455544443 3344556666665433322323345555
Q ss_pred HHHHhc
Q 002037 268 IGTALR 273 (977)
Q Consensus 268 ~~~~l~ 273 (977)
=|++++
T Consensus 387 EAGMiA 392 (424)
T KOG0652|consen 387 EAGMIA 392 (424)
T ss_pred hhhHHH
Confidence 566554
No 267
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.04 E-value=0.049 Score=56.80 Aligned_cols=52 Identities=29% Similarity=0.342 Sum_probs=39.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh---c----CCCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ---E----IPFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~---~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
.++=|+|.+|+|||+||.+++-. . ..=..++||+-...|...++. +|++..+
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~ 97 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFG 97 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccc
Confidence 48899999999999999887644 1 112479999999999988875 4666543
No 268
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=0.016 Score=59.38 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-|+|.++|++|.|||+|+++++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQk 200 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQK 200 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHh
Confidence 579999999999999999999988
No 269
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.98 E-value=0.0086 Score=55.15 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=25.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDK 123 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~ 123 (977)
..-|+|.||+|+||||+++.+.+. ...|..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCcee
Confidence 457899999999999999999988 444653
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.97 E-value=0.021 Score=62.11 Aligned_cols=86 Identities=14% Similarity=0.223 Sum_probs=49.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCC--CEEEEEEeCCC-CCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHcc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQT-PDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ 169 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f--~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 169 (977)
-.+++++|+.|+||||++.+++.. ...+ ..+..++.... ....+-++..++.++..................+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~-- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELR-- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhc--
Confidence 459999999999999999999987 3333 35666654332 23344455556666654332211111222223332
Q ss_pred ceEEEEecCccc
Q 002037 170 KRVLIILDDLWG 181 (977)
Q Consensus 170 ~~~LlvlDdv~~ 181 (977)
++-++++|....
T Consensus 215 ~~DlVLIDTaG~ 226 (374)
T PRK14722 215 NKHMVLIDTIGM 226 (374)
T ss_pred CCCEEEEcCCCC
Confidence 345666888753
No 271
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=95.97 E-value=0.0088 Score=64.11 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=38.9
Q ss_pred cccchHHHHHHHHHHhhcCC----CceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 72 PLKSALEVIKSVMKLLKDNS----ISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~----~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|-++.++++++++.... ...++++++|+.|+||||||+.+++.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~ 101 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRG 101 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999886522 23579999999999999999999988
No 272
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.96 E-value=0.031 Score=54.99 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=25.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|.|..|.|||||++.++.......+.+++
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 61 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 389999999999999999999873333444444
No 273
>PRK04296 thymidine kinase; Provisional
Probab=95.95 E-value=0.0055 Score=60.83 Aligned_cols=109 Identities=15% Similarity=0.111 Sum_probs=59.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcccc---chHHHHHHHHHHHHHccc
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG---DVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~~ 170 (977)
.++.|+|..|.||||+|..++.+ ..+-..++.+. ..++.......++++++..... .........+.+ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hCCC
Confidence 47889999999999999999888 33333444442 1112222233455555432221 111222223333 2345
Q ss_pred eEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChH
Q 002037 171 RVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKE 209 (977)
Q Consensus 171 ~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~ 209 (977)
.-+||+|.+.-. ++..++...+ ...|..||+|.++.+
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 568999998543 1122221111 245778999998854
No 274
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.91 E-value=0.00049 Score=68.52 Aligned_cols=99 Identities=24% Similarity=0.249 Sum_probs=50.9
Q ss_pred CCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEccCC
Q 002037 442 PRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGS 521 (977)
Q Consensus 442 ~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~ 521 (977)
.+++.|++.||.+.++. +..+|+.|.+|.||-|.|+.+ ..+..+++|+.|.|+.|
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL-----------------------~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL-----------------------APLQRCTRLKELYLRKN 73 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc-----------------------hhHHHHHHHHHHHHHhc
Confidence 34444555555554432 244555555555555554444 33344444444444444
Q ss_pred CCcccCc--cccCCCCCCEEEcCCCCCCCccCh----hhhhcCccccEEE
Q 002037 522 RIVELPN--GIGTVSNLKLLDLSNNLFLQVIPP----NVISKLSQLEELY 565 (977)
Q Consensus 522 ~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~----~~i~~L~~L~~L~ 565 (977)
.|..+-+ .+.++++|+.|.|..|.....-+. .++.-|++|+.|+
T Consensus 74 ~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 74 CIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 4443322 256677777777776654444332 2355667777664
No 275
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.90 E-value=0.22 Score=57.10 Aligned_cols=163 Identities=15% Similarity=0.163 Sum_probs=96.2
Q ss_pred ccchHHHHHHHHHHhhc---CCCceeEEEEEcCCCChHHHHHHHHHhh------c---CCCCEEEEEEeCCCCCHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKD---NSISINIIGVYGSGGIGKTTLMKQVMKQ------E---IPFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~------~---~~f~~~~wv~~~~~~~~~~~~~ 140 (977)
+-+|+.+..+|...+.. +...-..+-|.|.+|+|||..+..|.+. . ..|+ .+.|+.-.-....+++.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y~ 476 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIYE 476 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHHH
Confidence 45788888888876632 2222458999999999999999999985 2 2343 34455555567889999
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHH----ccceEEEEecCcccccc--ccccccCC-CCCCCCeEEEEecCCh--HH-
Q 002037 141 EIARFLNTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKLD--LAVVGIPY-GEEHKGCKIILTSRFK--EV- 210 (977)
Q Consensus 141 ~i~~~l~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~~--~~~l~~~~-~~~~~gs~iivTtR~~--~v- 210 (977)
.|...+........ ...+.+..+.. +.+..++++|+++..-. .+.+-..| .+..++||++|-+=-. +.
T Consensus 477 ~I~~~lsg~~~~~~--~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlP 554 (767)
T KOG1514|consen 477 KIWEALSGERVTWD--AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLP 554 (767)
T ss_pred HHHHhcccCcccHH--HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCH
Confidence 99998865433222 22333333332 35678999999875421 11111122 2345778776654211 11
Q ss_pred --------HhhccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 211 --------CDEMESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 211 --------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
+..++ -..+...|-+.++-.++...+..
T Consensus 555 Er~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~ 590 (767)
T KOG1514|consen 555 ERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLK 590 (767)
T ss_pred HHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhc
Confidence 11111 13456666777766666665553
No 276
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.89 E-value=0.028 Score=55.35 Aligned_cols=116 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEE---eCCCCCHHHHHHH------HHHHhhhcc------ccch-HHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVR---VTQTPDVKRVQDE------IARFLNTEL------EGDV-EVLR 158 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~---~~~~~~~~~~~~~------i~~~l~~~~------~~~~-~~~~ 158 (977)
.+++|.|..|.|||||++.++.......+.+++. +.. .+....... +++.++... ..-+ -...
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~q 104 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQ 104 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHH
Confidence 3999999999999999999998844455555542 221 122222221 333333211 0011 1111
Q ss_pred HHHHHHHHHccceEEEEecCcccccc---ccccccCCCC-CCC-CeEEEEecCChHHHh
Q 002037 159 AAFLSERLKRQKRVLIILDDLWGKLD---LAVVGIPYGE-EHK-GCKIILTSRFKEVCD 212 (977)
Q Consensus 159 ~~~l~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~~~~-~~~-gs~iivTtR~~~v~~ 212 (977)
...+...+- ..+-++++|+-...-+ .+.+...+.. ... |..||++|.+.+...
T Consensus 105 rl~laral~-~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 105 RVLLARALA-QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHh-cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 222333333 4778999998654322 1112111111 112 567888888876543
No 277
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.88 E-value=0.0069 Score=61.28 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 47999999999999999999874
No 278
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.058 Score=58.37 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=27.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
.++|+++|++|+||||++..++.. ...=..+..++..
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 479999999999999999999877 2221244555544
No 279
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.85 E-value=0.061 Score=58.35 Aligned_cols=53 Identities=26% Similarity=0.445 Sum_probs=39.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCC------CCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIP------FDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~------f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
-.++-|+|.+|+|||++|.+++-. ... =..++||+....++..++.+ +++.++
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 458899999999999999998765 111 14799999999888877654 444443
No 280
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.2 Score=49.56 Aligned_cols=177 Identities=17% Similarity=0.192 Sum_probs=91.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
+.+-+.++|++|.|||-||++|++. ..+-|+.||...- +++-|.+- + .....+.-..+..-+-
T Consensus 180 QPKGvlLygppgtGktLlaraVahh----t~c~firvsgsel---vqk~igeg--------s--rmvrelfvmarehaps 242 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHH----TDCTFIRVSGSEL---VQKYIGEG--------S--RMVRELFVMAREHAPS 242 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhh----cceEEEEechHHH---HHHHhhhh--------H--HHHHHHHHHHHhcCCc
Confidence 4667899999999999999999986 2345677776422 22222111 0 0111111111235678
Q ss_pred EEEecCcccccc----------------ccccccCCC--CCCCCeEEEEecCChHHHh-----hccCCceEEccCCCHHH
Q 002037 173 LIILDDLWGKLD----------------LAVVGIPYG--EEHKGCKIILTSRFKEVCD-----EMESTNYVQVEELTDED 229 (977)
Q Consensus 173 LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~ 229 (977)
+|+.|++++... .-++...+. ...+.-+||..|..-++.. .-.-++-++.++-+++.
T Consensus 243 iifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~a 322 (404)
T KOG0728|consen 243 IIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEA 322 (404)
T ss_pred eEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHH
Confidence 888888864310 001111221 2345667888776555522 12234568888888877
Q ss_pred HHHHHHHhcCC--CCCChhhHHHHHHHHHHhCCChhHHHHHHHHhc--CC----ChhHHHHHHHH
Q 002037 230 RLILFKKKAGL--PEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALR--HK----PVREWNEAIKR 286 (977)
Q Consensus 230 ~~~lf~~~~~~--~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~--~~----~~~~w~~~l~~ 286 (977)
-.++++-+... -..--+++.++.++....|.--.+..+-|++.+ .+ +.++++-+..+
T Consensus 323 r~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 323 RLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred HHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 77777654321 111223344444433322223344444455443 22 44555554443
No 281
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.84 E-value=0.06 Score=55.70 Aligned_cols=48 Identities=19% Similarity=0.269 Sum_probs=35.4
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
.-.++.|.|.+|+|||++|.++... -+.-..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC--CHHHHHHHH
Confidence 3569999999999999999987766 33446788888765 444555543
No 282
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.84 E-value=0.071 Score=57.49 Aligned_cols=35 Identities=29% Similarity=0.321 Sum_probs=27.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEe
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 129 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~ 129 (977)
..+.++|..|+|||+||.++++. ...-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEH
Confidence 57999999999999999999998 333335677654
No 283
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.83 E-value=0.022 Score=55.56 Aligned_cols=33 Identities=27% Similarity=0.506 Sum_probs=26.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|.|..|.|||||++.++.......+.+++
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~ 61 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILI 61 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEE
Confidence 399999999999999999999884444555444
No 284
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.82 E-value=0.0052 Score=61.49 Aligned_cols=104 Identities=26% Similarity=0.310 Sum_probs=54.0
Q ss_pred cCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC-CCCCCcccCCCCCeEecCC
Q 002037 420 QNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~ 498 (977)
..+..+++.+..+..+..++.+++|+.|.++.|.. .+. .++.....+++|++|++++
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~----------------------~~~~~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYR----------------------RVSGGLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcc----------------------cccccceehhhhCCceeEEeecC
Confidence 44455555555554444444455555555554421 211 2333334445555556655
Q ss_pred CCCCC---CccccCCCCccEEEccCCCCcccCc----cccCCCCCCEEEcCCCC
Q 002037 499 THLND---ASLIREFGELEVLILKGSRIVELPN----GIGTVSNLKLLDLSNNL 545 (977)
Q Consensus 499 ~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~ 545 (977)
|.+.. ...+..+.+|..|++.+|..+.+-. .+.-+++|.+||-....
T Consensus 101 Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 101 NKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred CccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 55543 3344455666677777766554422 14556778888765553
No 285
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.80 E-value=0.083 Score=62.06 Aligned_cols=65 Identities=12% Similarity=0.068 Sum_probs=44.4
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
..+.+++|+...+.++.+.+..-...-.-|.|+|..|+|||++|+.+.+. ...-...+.|++..-
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~ 258 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAAL 258 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCC
Confidence 34556788888888887766543222446789999999999999999987 222223445555543
No 286
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.79 E-value=0.058 Score=58.64 Aligned_cols=60 Identities=12% Similarity=0.082 Sum_probs=40.1
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhcCC-CCEEEEEEeCC
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIP-FDKVIFVRVTQ 131 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-f~~~~wv~~~~ 131 (977)
.++|+...+.++.+.+..-...-.-|.|+|..|+||+++|+.+...... -...+.|++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~ 67 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCC
Confidence 4667777777777665443222347889999999999999999866222 12344555554
No 287
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.76 E-value=0.075 Score=57.45 Aligned_cols=55 Identities=22% Similarity=0.186 Sum_probs=41.5
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh---c---C-CCCEEEEEEeCCCCCHHHHHHHHHHHhhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ---E---I-PFDKVIFVRVTQTPDVKRVQDEIARFLNT 148 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~---~---~-~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 148 (977)
.-.++-|+|.+|+|||+|+.+++-. . . .-..++||+....|+..++.+ +++.++.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~ 186 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGM 186 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 3458889999999999999988643 1 1 125789999999999888755 5665543
No 288
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.74 E-value=0.031 Score=59.52 Aligned_cols=28 Identities=32% Similarity=0.515 Sum_probs=24.8
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCC
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIP 120 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~ 120 (977)
..+.++|||+.|+|||.+|+++++. ...
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 4679999999999999999999999 444
No 289
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.72 E-value=0.05 Score=54.37 Aligned_cols=37 Identities=30% Similarity=0.547 Sum_probs=27.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh---cCCC--------CEEEEEEeCCC
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ---EIPF--------DKVIFVRVTQT 132 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~---~~~f--------~~~~wv~~~~~ 132 (977)
++.|.|.+|+||||++..++.. ...| ..++|++....
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 8999999999999999998877 2222 36788877765
No 290
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.72 E-value=0.048 Score=52.88 Aligned_cols=23 Identities=22% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|..|.|||||++.++..
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~ 50 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGL 50 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999987
No 291
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.70 E-value=0.039 Score=60.63 Aligned_cols=85 Identities=24% Similarity=0.255 Sum_probs=50.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccc--hHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGD--VEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~--~~~~~~~~l~~~l~~~~ 170 (977)
-.++.|.|.+|+|||||+.+++.. ...-..++|++..+. ..++. .-++.++...+.. ......+.+.+.+...+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~ 158 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASIEELK 158 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHHHhcC
Confidence 359999999999999999999887 333357888876543 33322 2234444322110 00112334444444456
Q ss_pred eEEEEecCccc
Q 002037 171 RVLIILDDLWG 181 (977)
Q Consensus 171 ~~LlvlDdv~~ 181 (977)
.-++|+|.+..
T Consensus 159 ~~lVVIDSIq~ 169 (372)
T cd01121 159 PDLVIIDSIQT 169 (372)
T ss_pred CcEEEEcchHH
Confidence 77889998754
No 292
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.66 E-value=0.022 Score=53.68 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=26.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|..|.|||||++.+........+.+|+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 59 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEE
Confidence 489999999999999999999874444555554
No 293
>PTZ00035 Rad51 protein; Provisional
Probab=95.62 E-value=0.097 Score=56.86 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=39.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cC------CCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EI------PFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~------~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
.-.++.|+|..|+|||||+..++-. .. .=..++||+....++..++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 3568999999999999999988754 21 2246779998888877764 44455544
No 294
>PRK06547 hypothetical protein; Provisional
Probab=95.61 E-value=0.016 Score=56.12 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=25.8
Q ss_pred HHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 84 MKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 84 ~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...+.... ..+|+|.|+.|+||||+|+.+.+.
T Consensus 7 ~~~~~~~~--~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 7 AARLCGGG--MITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred HHHhhcCC--CEEEEEECCCCCCHHHHHHHHHHH
Confidence 33344444 789999999999999999999886
No 295
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.61 E-value=0.053 Score=57.60 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=51.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERL 166 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 166 (977)
-+++-|+|+.|+||||||..+... .+.-..++||+....++... ++.++.+.+ .+..++....+.+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e~li 127 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAEQLI 127 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHHHHh
Confidence 459999999999999999998877 44456789999988777643 333443221 122233344444445
Q ss_pred HccceEEEEecCcccc
Q 002037 167 KRQKRVLIILDDLWGK 182 (977)
Q Consensus 167 ~~~~~~LlvlDdv~~~ 182 (977)
+.+.--++|+|-|...
T Consensus 128 rsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 128 RSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HTTSESEEEEE-CTT-
T ss_pred hcccccEEEEecCccc
Confidence 5566679999988654
No 296
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.59 E-value=0.06 Score=55.20 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=31.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
-.++.|.|..|+||||+|.+++.. .+. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 349999999999999998776655 332 4567776333 445555555
No 297
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.59 E-value=0.049 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.8
Q ss_pred CceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 92 ISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 92 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
....+|+|.|+.|+|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34789999999999999999999988
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.57 E-value=0.06 Score=60.67 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=45.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCC-CCEEEEEEeCCCC-CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHcc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIP-FDKVIFVRVTQTP-DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ 169 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~-f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 169 (977)
-.+|+|+|.+|+||||++..++.. ..+ ...+..++..... .....++...+.++................+.+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~-- 427 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR-- 427 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc--
Confidence 469999999999999999998876 222 2445556543211 1122223333334332222222222223333332
Q ss_pred ceEEEEecCcc
Q 002037 170 KRVLIILDDLW 180 (977)
Q Consensus 170 ~~~LlvlDdv~ 180 (977)
+.=+|++|...
T Consensus 428 ~~DLVLIDTaG 438 (559)
T PRK12727 428 DYKLVLIDTAG 438 (559)
T ss_pred cCCEEEecCCC
Confidence 35578888764
No 299
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.57 E-value=0.12 Score=62.59 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=41.7
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhc-CCCCEEEEEEeCC
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQE-IPFDKVIFVRVTQ 131 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~f~~~~wv~~~~ 131 (977)
+..++|+...+..+.+.+..-...-.-|.|+|..|+|||++|+.+.+.. ..-...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEeccc
Confidence 3457787777777766554322223479999999999999999998872 2223445555554
No 300
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.57 E-value=0.04 Score=52.95 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=59.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCC--CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP--DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+++|+|..|.|||||++.++..-....+.+++.-.... ...+ ....+....+-..-......+...+. ..+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~----~~~~i~~~~qlS~G~~~r~~l~~~l~-~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEE----LRRRIGYVPQLSGGQRQRVALARALL-LNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHH----HHhceEEEeeCCHHHHHHHHHHHHHh-cCCC
Confidence 499999999999999999999884445666665322111 1111 11112211111111122222333333 4678
Q ss_pred EEEecCcccccc------ccccccCCCCCCCCeEEEEecCChHHHhhc
Q 002037 173 LIILDDLWGKLD------LAVVGIPYGEEHKGCKIILTSRFKEVCDEM 214 (977)
Q Consensus 173 LlvlDdv~~~~~------~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 214 (977)
++++|+....-| +..+...+.. .+..|+++|.+.+.....
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~--~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAE--EGRTVIIVTHDPELAELA 146 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHh
Confidence 899998764422 1111111111 245688888887765543
No 301
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.56 E-value=0.0094 Score=55.03 Aligned_cols=21 Identities=43% Similarity=0.721 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~ 117 (977)
|+|.|+.|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999998776
No 302
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.55 E-value=0.046 Score=58.02 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=28.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c-C-CCCEEEEEEeCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E-I-PFDKVIFVRVTQ 131 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~-~-~f~~~~wv~~~~ 131 (977)
.++++|+|++|+||||++..++.. . . .-..+..|+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 469999999999999999998877 2 2 223566666543
No 303
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.54 E-value=0.11 Score=56.31 Aligned_cols=54 Identities=22% Similarity=0.329 Sum_probs=40.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cC------CCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EI------PFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~------~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
.-.++-|+|.+|+||||+|.+++-. .. .=..++||+....++..++.+ +++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~-~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQ-MAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3568899999999999999998765 21 113799999999888877654 444443
No 304
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.51 E-value=0.056 Score=51.46 Aligned_cols=33 Identities=33% Similarity=0.521 Sum_probs=26.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.++.|+|+.|.||||+.+.+|.....-.+.+|+
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~ 61 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEE
Confidence 389999999999999999999884444455555
No 305
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.50 E-value=0.019 Score=64.01 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=38.3
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++||++.++.+...+..+. -|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHH
Confidence 57899999999999888776 7999999999999999999986
No 306
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.50 E-value=0.086 Score=56.75 Aligned_cols=54 Identities=22% Similarity=0.245 Sum_probs=39.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh---cC----CCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ---EI----PFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~---~~----~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
.-.++.|+|.+|+||||+|..++.. .. .-..++|++....++..++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3569999999999999999988753 11 1236799998888887764 34455443
No 307
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.50 E-value=0.098 Score=56.66 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=41.3
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh---c----CCCCEEEEEEeCCCCCHHHHHHHHHHHhhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ---E----IPFDKVIFVRVTQTPDVKRVQDEIARFLNT 148 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~---~----~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~ 148 (977)
.-.++-|+|.+|+|||++|..++-. . ..-..++||+....|+.+++. +|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcCC
Confidence 3568899999999999999887744 1 112379999999999888764 45665543
No 308
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.48 E-value=0.069 Score=55.59 Aligned_cols=49 Identities=29% Similarity=0.401 Sum_probs=40.9
Q ss_pred CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHH
Q 002037 92 ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 92 ~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~ 140 (977)
+.-+++=|+|+.|.||||+|.+++-. ...-..++||+....++...+..
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~ 107 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQ 107 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHH
Confidence 44568899999999999999998766 55556899999999999887644
No 309
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.47 E-value=0.017 Score=54.25 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVR 128 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~ 128 (977)
.+|-|+|.+|+||||||+++... ...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58999999999999999999998 54445666664
No 310
>PRK04328 hypothetical protein; Provisional
Probab=95.46 E-value=0.065 Score=55.78 Aligned_cols=39 Identities=18% Similarity=0.264 Sum_probs=31.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
-.++.|.|.+|+|||+||.++... ...-..++|++..+.
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~ 62 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH 62 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence 459999999999999999997766 344467888887664
No 311
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=95.46 E-value=0.024 Score=54.90 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=33.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c-CCCCEEEEEEeCCCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRVTQTPD 134 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~-~~f~~~~wv~~~~~~~ 134 (977)
..++.+.|+.|+|||.+|+.++.. . +.....+-++++.-.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc
Confidence 568899999999999999999998 6 5677777787776544
No 312
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.44 E-value=0.021 Score=55.54 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|.|.|.+|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999998
No 313
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.42 E-value=0.0011 Score=66.24 Aligned_cols=97 Identities=26% Similarity=0.322 Sum_probs=76.2
Q ss_pred ccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC--CcccCCCCCeEec
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP--SLPCLEKLRSLHL 496 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~~~~l~~L~~L~L 496 (977)
+.+++.|+..+|.+.++....+++.|.+|.|+-|.++.+.+ |..|++|+.|.|..|.|..+-+ .+.++++||.|-|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 56788889999999888888899999999999999988765 7899999999999998887754 5678888888888
Q ss_pred CCCCCCC--C-----ccccCCCCccEEE
Q 002037 497 ENTHLND--A-----SLIREFGELEVLI 517 (977)
Q Consensus 497 ~~~~l~~--~-----~~i~~l~~L~~L~ 517 (977)
..|.-.. . ..+.-|++|+.||
T Consensus 96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 96 DENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred ccCCcccccchhHHHHHHHHcccchhcc
Confidence 8775322 1 2344455555554
No 314
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.42 E-value=0.11 Score=60.45 Aligned_cols=62 Identities=10% Similarity=0.143 Sum_probs=43.6
Q ss_pred ccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhcC-CCCEEEEEEeCCC
Q 002037 71 VPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEI-PFDKVIFVRVTQT 132 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~f~~~~wv~~~~~ 132 (977)
..++|+...+.++.+.+..-...-.-|.|+|..|+|||++|+.+.+... .-...+.|++..-
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccC
Confidence 3567777777777776655333345889999999999999999998822 2234455666654
No 315
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.42 E-value=0.094 Score=54.23 Aligned_cols=85 Identities=20% Similarity=0.253 Sum_probs=52.6
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc--------------------
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE-------------------- 151 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------------- 151 (977)
.-.++.|+|.+|+|||++|.++... ...=..++|++..+. ..++.+++.+ ++....
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~--~~~~~~~~~~-~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT--SKSYLKQMES-VKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC--HHHHHHHHHH-CCCChhHHHhCCCceEEecccccccc
Confidence 3569999999999999999998665 334457889988654 3455444322 221100
Q ss_pred -cchHHHHHHHHHHHHHccceEEEEecCcc
Q 002037 152 -GDVEVLRAAFLSERLKRQKRVLIILDDLW 180 (977)
Q Consensus 152 -~~~~~~~~~~l~~~l~~~~~~LlvlDdv~ 180 (977)
..........+.+.+.+.+.-++|+|.+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01113344455555554456689999875
No 316
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.40 E-value=0.051 Score=55.35 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=64.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCC-----CCCHHHHHHHHHHHhhhccc-------cchHHHHHHH-
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-----TPDVKRVQDEIARFLNTELE-------GDVEVLRAAF- 161 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~l~~~~~-------~~~~~~~~~~- 161 (977)
.+++|+|..|+||||+++.+..-...-.+.+++.-.+ .....+-..++++.++.... .-+.-+....
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~ 119 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIG 119 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHH
Confidence 3999999999999999999999844444444443211 11122333444444442211 0011111121
Q ss_pred HHHHHHccceEEEEecCccccccc------cccccCCCCCCCCeEEEEecCChHHHhhccC
Q 002037 162 LSERLKRQKRVLIILDDLWGKLDL------AVVGIPYGEEHKGCKIILTSRFKEVCDEMES 216 (977)
Q Consensus 162 l~~~l~~~~~~LlvlDdv~~~~~~------~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~ 216 (977)
+...+ .-++-++|.|+-...-+. -.+...+ ....|-..+..|.+-.+.+.+..
T Consensus 120 IARAL-al~P~liV~DEpvSaLDvSiqaqIlnLL~dl-q~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 120 IARAL-ALNPKLIVADEPVSALDVSVQAQILNLLKDL-QEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred HHHHH-hhCCcEEEecCchhhcchhHHHHHHHHHHHH-HHHhCCeEEEEEEEHHhhhhhcc
Confidence 22233 368899999986544221 1111111 12235567888888887766544
No 317
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.39 E-value=0.062 Score=59.71 Aligned_cols=88 Identities=20% Similarity=0.299 Sum_probs=50.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHh-----hhcccc-chH------HHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFL-----NTELEG-DVE------VLRAAFL 162 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l-----~~~~~~-~~~------~~~~~~l 162 (977)
..++|+|..|+|||||++.+........+++++.-....++..+........ ...... ... ...+..+
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~~i 245 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTATAI 245 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3899999999999999998887644444555554334445554444333222 111111 111 1111223
Q ss_pred HHHHH-ccceEEEEecCcccc
Q 002037 163 SERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 163 ~~~l~-~~~~~LlvlDdv~~~ 182 (977)
-+++. +++.+|+++||+...
T Consensus 246 AEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 246 AEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHcCCCEEEeccchHHH
Confidence 33332 589999999998654
No 318
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.35 E-value=0.055 Score=53.77 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHH
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~ 140 (977)
++.|.|.+|+|||++|.+++.. .+.=..++|++.... ...+.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~--~~~~~~ 44 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES--PEELIE 44 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC--HHHHHH
Confidence 3689999999999999998877 322256788876543 444433
No 319
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.045 Score=54.38 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=35.6
Q ss_pred ccccchHHHHHHHHHHhhcC-----------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 71 VPLKSALEVIKSVMKLLKDN-----------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
..+-|=.+.++++.+...-. -...+-|.++|++|.|||-.|++|+|+ ...|
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacf 239 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACF 239 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceE
Confidence 34556666666666544221 123567899999999999999999998 4444
No 320
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.35 E-value=0.077 Score=50.18 Aligned_cols=113 Identities=22% Similarity=0.244 Sum_probs=59.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCC---CCCHHHHHHHHHHHh-----hhc----cccc-hH----
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQ---TPDVKRVQDEIARFL-----NTE----LEGD-VE---- 155 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~---~~~~~~~~~~i~~~l-----~~~----~~~~-~~---- 155 (977)
..|-|++-.|.||||.|...+-+ ...+ .+.++..-+ ......+++.+- .+ +.. .... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~-~v~~vQFlKg~~~~gE~~~l~~l~-~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGY-RVGVVQFLKGGWKYGELKALERLP-NIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEEeCCCCccCHHHHHHhCC-CcEEEECCCCCccCCCChHHHHHHH
Confidence 36788888899999999988877 3333 344443222 223333333321 00 000 0000 11
Q ss_pred HHHHHHHHHHHHccceEEEEecCccccc-----cccccccCCCCCCCCeEEEEecCChH
Q 002037 156 VLRAAFLSERLKRQKRVLIILDDLWGKL-----DLAVVGIPYGEEHKGCKIILTSRFKE 209 (977)
Q Consensus 156 ~~~~~~l~~~l~~~~~~LlvlDdv~~~~-----~~~~l~~~~~~~~~gs~iivTtR~~~ 209 (977)
.......++.+..+.-=|+|||++-... +.+.+...+.....+.-||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1111223334444556699999986542 22333333334445678999999864
No 321
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.34 E-value=0.013 Score=46.95 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998876
No 322
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.32 E-value=0.02 Score=64.61 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=42.3
Q ss_pred CCcccccchHHHHHHHHHHhh----cCCCceeEEEEEcCCCChHHHHHHHHHhhcCCC
Q 002037 68 PEFVPLKSALEVIKSVMKLLK----DNSISINIIGVYGSGGIGKTTLMKQVMKQEIPF 121 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f 121 (977)
+-|..++|-++.++++++.+. .-+..-+++.++|+.|+||||||+.+++--..|
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~ 130 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERV 130 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhC
Confidence 334568899999999998872 222336799999999999999999999883334
No 323
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.31 E-value=0.19 Score=52.92 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=29.1
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
..++++++|++|+||||++..++.. ...-..+.+++..
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 3689999999999999999998877 3332356666654
No 324
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.29 E-value=0.017 Score=69.81 Aligned_cols=181 Identities=18% Similarity=0.172 Sum_probs=86.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCC--CC-HHHHH------HHHHHHhhhccccchHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT--PD-VKRVQ------DEIARFLNTELEGDVEVLRAAFLSE 164 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~--~~-~~~~~------~~i~~~l~~~~~~~~~~~~~~~l~~ 164 (977)
.++++|+|+.|.||||+.+.+....-....-++|.+... .. ...++ +.+...+.. -......+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LSt------fS~~m~~~~~ 395 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPANEHSEIPYFEEIFADIGDEQSIEQNLST------FSGHMKNISA 395 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCCccccccchhheeeecChHhHHhhhhhH------HHHHHHHHHH
Confidence 468999999999999999988755000000001111110 00 00000 111111110 0111112222
Q ss_pred HHH-ccceEEEEecCcccccc---cccc----ccCCCCCCCCeEEEEecCChHHHhhccCC-ce--EEccCCCHHHHHHH
Q 002037 165 RLK-RQKRVLIILDDLWGKLD---LAVV----GIPYGEEHKGCKIILTSRFKEVCDEMEST-NY--VQVEELTDEDRLIL 233 (977)
Q Consensus 165 ~l~-~~~~~LlvlDdv~~~~~---~~~l----~~~~~~~~~gs~iivTtR~~~v~~~~~~~-~~--~~l~~L~~~~~~~l 233 (977)
.+. ..++-|+++|+...-.+ -..+ ...+ ...|+.+|+||...++....... .+ ..+. ++.+ ...
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l--~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~- 470 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL--LKQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS- 470 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-
Confidence 222 14789999999865422 1112 1122 13578899999998874322111 11 1111 1111 000
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 002037 234 FKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKA 289 (977)
Q Consensus 234 f~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~ 289 (977)
|..+.-.. .+. ...|-.|++++ |+|-.+.--|..+......++..++.++..
T Consensus 471 p~Ykl~~G--~~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 471 PTYKLLKG--IPG-ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred eEEEECCC--CCC-CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111100 111 23467777776 888888888887765555566666666554
No 325
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.28 E-value=0.12 Score=57.03 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=48.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c----CCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E----IPFDKVIFVRVTQTP-DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK 167 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~----~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~ 167 (977)
.++|.++|+.|+||||.+..++.. . .+-..+..+++.... ....-++..++.++..................+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 579999999999999999998876 2 122355566655421 122224555555655433222211122212222
Q ss_pred ccceEEEEecCccc
Q 002037 168 RQKRVLIILDDLWG 181 (977)
Q Consensus 168 ~~~~~LlvlDdv~~ 181 (977)
.+.-++++|.+..
T Consensus 253 -~~~DlVLIDTaGr 265 (388)
T PRK12723 253 -KDFDLVLVDTIGK 265 (388)
T ss_pred -CCCCEEEEcCCCC
Confidence 3456888888754
No 326
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.28 E-value=0.038 Score=54.69 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|.|+|++|+||||+|+.++..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999886
No 327
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.26 E-value=0.014 Score=58.41 Aligned_cols=22 Identities=50% Similarity=0.776 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
||+|.|.+|+||||+|+.+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~ 22 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQI 22 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999988
No 328
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.021 Score=52.66 Aligned_cols=44 Identities=27% Similarity=0.426 Sum_probs=33.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcc
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL 150 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~ 150 (977)
+|.|-|++|+||||+|+.++++ .-.| | +.-.++++||+..+...
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~-----v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL-----V------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce-----e------eccHHHHHHHHHcCCCH
Confidence 6899999999999999999998 3222 1 22457888888877653
No 329
>PRK14974 cell division protein FtsY; Provisional
Probab=95.26 E-value=0.16 Score=54.88 Aligned_cols=53 Identities=25% Similarity=0.214 Sum_probs=33.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCC--HHHHHHHHHHHhhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPD--VKRVQDEIARFLNT 148 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~--~~~~~~~i~~~l~~ 148 (977)
..+|+++|+.|+||||++..++.. ...+ .++.+... .+. ...-++..++.++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~D-t~R~~a~eqL~~~a~~lgv 196 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAGD-TFRAGAIEQLEEHAERLGV 196 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecCC-cCcHHHHHHHHHHHHHcCC
Confidence 679999999999999998888876 3333 34444322 222 22334445555553
No 330
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.25 E-value=0.035 Score=65.13 Aligned_cols=79 Identities=13% Similarity=0.134 Sum_probs=59.6
Q ss_pred CCCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
|...+..+.|+++.++.+...+.... .+.++|..|+||||+|+.+++. ..+++..+|+.- ...+...+++.++
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~~~----~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQRR----HVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHhCC----eEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 34455678899988888887776653 7999999999999999999988 455677888654 3446777777777
Q ss_pred HHhhhc
Q 002037 144 RFLNTE 149 (977)
Q Consensus 144 ~~l~~~ 149 (977)
..++..
T Consensus 101 ~~~G~~ 106 (637)
T PRK13765 101 AGKGKQ 106 (637)
T ss_pred HhcCHH
Confidence 766543
No 331
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.25 E-value=0.083 Score=55.34 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=30.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
-.++.|.|.+|+|||++|.+++.. ...=..+++++...+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP 75 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence 459999999999999999998776 333357888888753
No 332
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.25 E-value=0.064 Score=52.51 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=25.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
++.++|++|+||||+++.++.. ...-..++.++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 6889999999999999999887 3331234445443
No 333
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.24 E-value=0.057 Score=52.15 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=49.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHcc-ceEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ-KRVLI 174 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~-~~~Ll 174 (977)
++.|.|..|+|||++|.++... ....++++.-...++. +..+.|.+............+....+.+.+.+. +.-.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~--~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~V 77 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE--LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVV 77 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh--cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEE
Confidence 3679999999999999998765 2236677766666654 455555554333333333333334444444322 33478
Q ss_pred EecCcc
Q 002037 175 ILDDLW 180 (977)
Q Consensus 175 vlDdv~ 180 (977)
++|.+.
T Consensus 78 LIDclt 83 (169)
T cd00544 78 LIDCLT 83 (169)
T ss_pred EEEcHh
Confidence 999864
No 334
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.22 E-value=0.042 Score=53.51 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||.+.+..+
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 49999999999999999998643
No 335
>PTZ00301 uridine kinase; Provisional
Probab=95.22 E-value=0.023 Score=57.05 Aligned_cols=24 Identities=29% Similarity=0.693 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 579999999999999999999877
No 336
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.22 E-value=0.018 Score=57.68 Aligned_cols=109 Identities=13% Similarity=0.167 Sum_probs=56.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH-HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK-RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+|.|+|+.|+||||++..+... .......++. +.++.... .-...+..+-. . +.........++..+. ..+=
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~--v-g~~~~~~~~~i~~aLr-~~pd 76 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILT-IEDPIEFVHESKRSLINQRE--V-GLDTLSFENALKAALR-QDPD 76 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEE-EcCCccccccCccceeeecc--c-CCCccCHHHHHHHHhc-CCcC
Confidence 37899999999999999988877 4344444443 22211100 00001111100 0 1111122334455554 3566
Q ss_pred EEEecCccccccccccccCCCCCCCCeEEEEecCChHHH
Q 002037 173 LIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVC 211 (977)
Q Consensus 173 LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~ 211 (977)
.+++|++.+.+........ ...|..++.|+...++.
T Consensus 77 ~ii~gEird~e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 77 VILVGEMRDLETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred EEEEcCCCCHHHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 9999999766544432221 22455577777766543
No 337
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.21 E-value=0.033 Score=54.26 Aligned_cols=49 Identities=24% Similarity=0.335 Sum_probs=33.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
..+|+|-||-|+||||||+.++++-+ |. ++.-.+.+++=+...+.++.+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~-~~-~~~E~vednp~L~~FY~d~~~ 52 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG-FK-VFYELVEDNPFLDLFYEDPER 52 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC-Cc-eeeecccCChHHHHHHHhHHH
Confidence 46899999999999999999999822 22 333345555444555555444
No 338
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.21 E-value=0.072 Score=57.49 Aligned_cols=87 Identities=20% Similarity=0.136 Sum_probs=50.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCC-HHHHHHHHHHHhhhccc-cchHHHHHHHHHHHHH-cc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD-VKRVQDEIARFLNTELE-GDVEVLRAAFLSERLK-RQ 169 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~~~~~-~~~~~~~~~~l~~~l~-~~ 169 (977)
.++++|+|+.|+||||++..++.. ...-..+.+|++..... ..+-++..++.++.... ..+.......+ +.+. .+
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al-~~l~~~~ 284 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAV-QYMTYVN 284 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHH-HHHHhcC
Confidence 579999999999999999998876 22224567777654322 23344555555554322 12222222222 3332 13
Q ss_pred ceEEEEecCccc
Q 002037 170 KRVLIILDDLWG 181 (977)
Q Consensus 170 ~~~LlvlDdv~~ 181 (977)
..=++++|-...
T Consensus 285 ~~D~VLIDTAGr 296 (407)
T PRK12726 285 CVDHILIDTVGR 296 (407)
T ss_pred CCCEEEEECCCC
Confidence 446777787654
No 339
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=95.20 E-value=0.027 Score=61.68 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++|+|+.|.||||||+.+..-
T Consensus 364 ~lgIIGPSgSGKSTLaR~lvG~ 385 (580)
T COG4618 364 ALGIIGPSGSGKSTLARLLVGI 385 (580)
T ss_pred eEEEECCCCccHHHHHHHHHcc
Confidence 8999999999999999999865
No 340
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.18 E-value=0.0048 Score=57.75 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.-|.|+|..|+||+++|+.++..
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhh
Confidence 347899999999999999999887
No 341
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.18 E-value=0.062 Score=54.63 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=26.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cC-CC-CEEEEEEeCCC
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EI-PF-DKVIFVRVTQT 132 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~-~f-~~~~wv~~~~~ 132 (977)
+|+|.|..|+||||+|+.+... .. .. ..+..++...-
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 5899999999999999999987 32 12 23455555543
No 342
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.15 E-value=0.0026 Score=63.34 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=23.8
Q ss_pred cccCCCCccEEEccCCCCc-ccC----ccccCCCCCCEEEcCCCC
Q 002037 506 LIREFGELEVLILKGSRIV-ELP----NGIGTVSNLKLLDLSNNL 545 (977)
Q Consensus 506 ~i~~l~~L~~L~l~~~~l~-~lp----~~i~~l~~L~~L~l~~~~ 545 (977)
.+-++++|+..+||.|.+. +.| .-|.+-+.|.||.+++|.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence 3445566666666666443 222 235666777788777775
No 343
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.14 E-value=0.011 Score=59.91 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=57.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCE-------------EEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDK-------------VIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLR 158 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~-------------~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 158 (977)
-++++|.|+.|.||||+.+.+... ..+-.. .++..+....++..- ...-...
T Consensus 31 g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~-------------~StF~~e 97 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHG-------------MSTFMVE 97 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccc-------------cchHHHH
Confidence 458899999999999999998873 111111 222233322222111 0111122
Q ss_pred HHHHHHHHH-ccceEEEEecCccccc---c----ccccccCCCCCCCCeEEEEecCChHHHhhc
Q 002037 159 AAFLSERLK-RQKRVLIILDDLWGKL---D----LAVVGIPYGEEHKGCKIILTSRFKEVCDEM 214 (977)
Q Consensus 159 ~~~l~~~l~-~~~~~LlvlDdv~~~~---~----~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 214 (977)
..++...++ ..++-|+++|+..... + ...+...+.. ..++.+|++|.+.+++...
T Consensus 98 ~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 98 LSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred HHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHHH
Confidence 223333333 3578999999974321 1 1112222222 2578899999999886543
No 344
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.09 E-value=0.12 Score=58.01 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=28.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c--CCCCEEEEEEeCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E--IPFDKVIFVRVTQ 131 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~--~~f~~~~wv~~~~ 131 (977)
-++++++|++|+||||++..++.. . ..-..+..|+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 358999999999999999988776 3 3335677776544
No 345
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.08 E-value=0.035 Score=54.95 Aligned_cols=49 Identities=31% Similarity=0.368 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEEEE
Q 002037 76 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVR 128 (977)
Q Consensus 76 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~wv~ 128 (977)
+..+-...++.+.+ ..++.+.|++|.|||.||.+.+-+ .+.|+.++++.
T Consensus 5 ~~~~Q~~~~~al~~----~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 5 KNEEQKFALDALLN----NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -SHHHHHHHHHHHH-----SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCHHHHHHHHHHHh----CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 34445556666664 459999999999999999988876 78888888874
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.06 E-value=0.072 Score=58.50 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+++++|++|+||||+|..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
No 347
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.04 E-value=0.03 Score=53.72 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.|.+.|.+|+||||+|++++..
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~ 24 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKE 24 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHH
Confidence 46889999999999999999987
No 348
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.03 E-value=0.036 Score=51.68 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=28.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQ 131 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~ 131 (977)
++|.|+|..|+|||||++.+.+. +..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 48999999999999999999999 66777666776665
No 349
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.02 E-value=0.15 Score=57.25 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=35.5
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT-PDVKRVQDEIARFLNT 148 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 148 (977)
...+|.++|..|+||||+|..++.. ...-..+..|++... ....+.++.+++.++.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gv 151 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGV 151 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence 3679999999999999999999887 322124444544321 1223344555666554
No 350
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.01 E-value=0.039 Score=50.43 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|.+.|.-|+||||+++.+++.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~ 45 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQG 45 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 38999999999999999999987
No 351
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.01 E-value=0.035 Score=56.13 Aligned_cols=62 Identities=21% Similarity=0.289 Sum_probs=38.6
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC-CCCEEEEEEeCCCCCHHHHHH
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-PFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~f~~~~wv~~~~~~~~~~~~~ 140 (977)
...++++.+.....+..+|+|.|++|+|||||.-.+... .. +=-.++=|+-|.+++--.++.
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 445666666655545789999999999999999998877 22 223555666676776655544
No 352
>PRK08233 hypothetical protein; Provisional
Probab=95.00 E-value=0.019 Score=56.77 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|.+|+||||+|+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999876
No 353
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.99 E-value=0.081 Score=55.76 Aligned_cols=39 Identities=23% Similarity=0.177 Sum_probs=27.6
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCC--CEEEEEEeCC
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQ 131 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f--~~~~wv~~~~ 131 (977)
...+|+|.|..|+||||+|+.+... .... ..+..++...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~ 102 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDG 102 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccc
Confidence 3679999999999999999887666 3221 2345555444
No 354
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.98 E-value=0.021 Score=57.95 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|.+|+||||||+.++..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999886
No 355
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.98 E-value=0.02 Score=54.06 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999876
No 356
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.98 E-value=0.091 Score=50.21 Aligned_cols=24 Identities=33% Similarity=0.685 Sum_probs=22.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQE 118 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~ 118 (977)
.+++|.|++|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 588999999999999999998875
No 357
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.97 E-value=0.022 Score=57.63 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|++|+||||||+.++..
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999999877
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.93 E-value=0.079 Score=60.84 Aligned_cols=208 Identities=17% Similarity=0.119 Sum_probs=0.0
Q ss_pred hHHhhhccCccccCCcChHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCcCccCCCCCC------------ccccc
Q 002037 7 EEKIQKSEGRCHTWHLDWRKRHQLSRVATKKTVEIIEHIRLSNFESISFPARSADVRSIPTPE------------FVPLK 74 (977)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~ 74 (977)
.++.+++....-.|......+..-+++.+...++++++.+...-........+......+... ..++.
T Consensus 253 ~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~ 332 (530)
T COG0488 253 YEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD 332 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccC
Q ss_pred chHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---------cCCCCEEEEEEeCCCCCH----------
Q 002037 75 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---------EIPFDKVIFVRVTQTPDV---------- 135 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---------~~~f~~~~wv~~~~~~~~---------- 135 (977)
+....++.+--.+..++ .|+|+|+.|+|||||.+.+... ...--.+.|+.-......
T Consensus 333 ~~~~l~~~~s~~i~~g~----riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~ 408 (530)
T COG0488 333 GGRLLLKDLSFRIDRGD----RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELS 408 (530)
T ss_pred CCceeecCceEEecCCC----EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHH
Q ss_pred -------HHHHHHHHHHhh-------hccccchHHHHHHHHHHHHHccceEEEEec------CccccccccccccCCCCC
Q 002037 136 -------KRVQDEIARFLN-------TELEGDVEVLRAAFLSERLKRQKRVLIILD------DLWGKLDLAVVGIPYGEE 195 (977)
Q Consensus 136 -------~~~~~~i~~~l~-------~~~~~~~~~~~~~~l~~~l~~~~~~LlvlD------dv~~~~~~~~l~~~~~~~ 195 (977)
..-.+..+..++ .....-+--+........+.-.++-+|||| |++....++.....+.
T Consensus 409 ~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-- 486 (530)
T COG0488 409 EGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-- 486 (530)
T ss_pred hhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--
Q ss_pred CCCeEEEEecCChHHHhhccCCceEEccC
Q 002037 196 HKGCKIILTSRFKEVCDEMESTNYVQVEE 224 (977)
Q Consensus 196 ~~gs~iivTtR~~~v~~~~~~~~~~~l~~ 224 (977)
|+ ||+.|.++.....+. ..++.+.+
T Consensus 487 --Gt-vl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 487 --GT-VLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred --Ce-EEEEeCCHHHHHhhc-ceEEEEcC
No 359
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.93 E-value=0.12 Score=59.51 Aligned_cols=84 Identities=17% Similarity=0.176 Sum_probs=51.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc----------------cchHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE----------------GDVEV 156 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----------------~~~~~ 156 (977)
-.++.|.|.+|+||||||.+++.. .+.-..+++++..+ +..++.+.+ +.++.... ....+
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~~~~ 339 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESAGLE 339 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccCChH
Confidence 459999999999999999999887 33335677776555 344444443 33332111 01113
Q ss_pred HHHHHHHHHHHccceEEEEecCcc
Q 002037 157 LRAAFLSERLKRQKRVLIILDDLW 180 (977)
Q Consensus 157 ~~~~~l~~~l~~~~~~LlvlDdv~ 180 (977)
.....+.+.+...+.-.+|+|.+.
T Consensus 340 ~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 340 DHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCHH
Confidence 445555555554455567777664
No 360
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.92 E-value=0.048 Score=53.84 Aligned_cols=40 Identities=28% Similarity=0.449 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCH
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDV 135 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~ 135 (977)
.|+|+|-||+||||+|..++.. .++-..+.=|+...+++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCCCh
Confidence 6899999999999999997766 333234555666666553
No 361
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.90 E-value=0.012 Score=59.26 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5999999999999999999983
No 362
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.90 E-value=0.1 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..|+|++|+|||+||..++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999998865
No 363
>PRK06762 hypothetical protein; Provisional
Probab=94.89 E-value=0.022 Score=55.31 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.|.|+.|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999877
No 364
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.89 E-value=0.18 Score=64.59 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+=|.++|++|+|||.||++++.+
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHh
Confidence 557889999999999999999998
No 365
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.87 E-value=0.058 Score=49.71 Aligned_cols=116 Identities=18% Similarity=0.382 Sum_probs=41.0
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccE
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEV 515 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~ 515 (977)
..+.+|+.+.+.. .+..+....|.++..|+.+.+.++ +..++. .+..+..|+.+.+.. .+.. ...+..+.+|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 3445555555543 344455555566656666666553 444443 444555555555543 2221 233344555555
Q ss_pred EEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccc
Q 002037 516 LILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQL 561 (977)
Q Consensus 516 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L 561 (977)
+++..+ +..++.. +.+. +|+.+.+..+ ...++...+.++++|
T Consensus 86 i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 86 IDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp EEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 555432 4434332 3333 5555554432 233344434444433
No 366
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.84 E-value=0.018 Score=51.50 Aligned_cols=26 Identities=35% Similarity=0.597 Sum_probs=18.7
Q ss_pred EEEEcCCCChHHHHHHHHHhh-cCCCC
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ-EIPFD 122 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~-~~~f~ 122 (977)
|.|+|.+|+||||+|+.++.. ...|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 679999999999999999998 66664
No 367
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=94.84 E-value=0.033 Score=55.69 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++++|+|+.|.||||+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 69999999999999999988754
No 368
>PRK10867 signal recognition particle protein; Provisional
Probab=94.84 E-value=0.19 Score=56.28 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.++|.+|+||||.|..++..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999998888876
No 369
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.81 E-value=0.027 Score=55.66 Aligned_cols=25 Identities=44% Similarity=0.710 Sum_probs=23.4
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+.+|+|.|.+|+||||+|+.++..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~ 31 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQ 31 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 3689999999999999999999988
No 370
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=94.79 E-value=0.095 Score=59.06 Aligned_cols=123 Identities=20% Similarity=0.271 Sum_probs=65.4
Q ss_pred HHHHHHhhcCCCceeEEEEEcCCCChHHH-HHHHHHhhcCCCCEEEEEEeCCCCCH--HHHHHHHHHHhhhcccc-----
Q 002037 81 KSVMKLLKDNSISINIIGVYGSGGIGKTT-LMKQVMKQEIPFDKVIFVRVTQTPDV--KRVQDEIARFLNTELEG----- 152 (977)
Q Consensus 81 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~l~~~~~~----- 152 (977)
++|++.+.++. ||.|+|-.|.|||| ||+.+|.+...=.+ .|-+.++-.+ ..+.+.+++.++.....
T Consensus 362 ~~ll~~ir~n~----vvvivgETGSGKTTQl~QyL~edGY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYs 435 (1042)
T KOG0924|consen 362 DQLLSVIRENQ----VVVIVGETGSGKTTQLAQYLYEDGYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYS 435 (1042)
T ss_pred HHHHHHHhhCc----EEEEEecCCCCchhhhHHHHHhcccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceE
Confidence 45566666655 99999999999988 56667766222222 4445555433 34556666666432211
Q ss_pred -----c----------hH-HHHHHHHHHHHHccceEEEEecCcccccc-ccccccCC---CCCCCCeEEEEecCChHH
Q 002037 153 -----D----------VE-VLRAAFLSERLKRQKRVLIILDDLWGKLD-LAVVGIPY---GEEHKGCKIILTSRFKEV 210 (977)
Q Consensus 153 -----~----------~~-~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-~~~l~~~~---~~~~~gs~iivTtR~~~v 210 (977)
. ++ ....+.+.+... .|--.||+|.+.+..- .+-+...+ ......-|+||||-..+.
T Consensus 436 IRFEdvT~~~T~IkymTDGiLLrEsL~d~~L-~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 436 IRFEDVTSEDTKIKYMTDGILLRESLKDRDL-DKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDA 512 (1042)
T ss_pred EEeeecCCCceeEEEeccchHHHHHhhhhhh-hheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccH
Confidence 0 11 111122233322 4566899999876521 11111111 112346789999865543
No 371
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.79 E-value=0.24 Score=53.67 Aligned_cols=85 Identities=20% Similarity=0.186 Sum_probs=47.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c--CCCCEEEEEEeCCC-CCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHcc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E--IPFDKVIFVRVTQT-PDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQ 169 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~--~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~ 169 (977)
-++|+++|+.||||||-...++.+ . +.=..+..|+...- ....+-++.-++-++..................+. .
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~-~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALR-D 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhh-c
Confidence 579999999999999866555555 2 33356777766542 23344455556666665553333333333333333 2
Q ss_pred ceEEEEecCcc
Q 002037 170 KRVLIILDDLW 180 (977)
Q Consensus 170 ~~~LlvlDdv~ 180 (977)
. =+|.+|-+.
T Consensus 282 ~-d~ILVDTaG 291 (407)
T COG1419 282 C-DVILVDTAG 291 (407)
T ss_pred C-CEEEEeCCC
Confidence 3 344445543
No 372
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.1 Score=56.04 Aligned_cols=84 Identities=23% Similarity=0.285 Sum_probs=54.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcccc--chHHHHHHHHHHHHHccce
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG--DVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~~~~ 171 (977)
.+|.|-|-+|||||||..+++.+ .+.- .+.||+-.+. ..++ +--++.++....+ ...+...+.+.+.+.+.++
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 48999999999999999999998 3332 7777755443 3222 2234556533221 1122334556666666789
Q ss_pred EEEEecCcccc
Q 002037 172 VLIILDDLWGK 182 (977)
Q Consensus 172 ~LlvlDdv~~~ 182 (977)
-++|+|-+...
T Consensus 170 ~lvVIDSIQT~ 180 (456)
T COG1066 170 DLVVIDSIQTL 180 (456)
T ss_pred CEEEEecccee
Confidence 99999988654
No 373
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.78 E-value=0.12 Score=61.67 Aligned_cols=84 Identities=15% Similarity=0.233 Sum_probs=56.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHH
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSER 165 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~ 165 (977)
.-+++-|+|..|+||||||.+++.. ...=..++|++....++.. .+++++.+.. ....+.....+...
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~~l 133 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIADML 133 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHHHH
Confidence 3568899999999999999887666 3333678999888777742 5666654322 11223334444444
Q ss_pred HHccceEEEEecCccc
Q 002037 166 LKRQKRVLIILDDLWG 181 (977)
Q Consensus 166 l~~~~~~LlvlDdv~~ 181 (977)
++.++.-++|+|.+..
T Consensus 134 v~~~~~~LVVIDSI~a 149 (790)
T PRK09519 134 IRSGALDIVVIDSVAA 149 (790)
T ss_pred hhcCCCeEEEEcchhh
Confidence 5556778999998864
No 374
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.77 E-value=0.083 Score=55.20 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999999987
No 375
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.77 E-value=0.091 Score=51.52 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|++|+||||+|+.++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999999988
No 376
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.77 E-value=0.042 Score=56.34 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEEEEeCCCCCHHHHHHH
Q 002037 81 KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 81 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~wv~~~~~~~~~~~~~~ 141 (977)
.+++..+.....+..+|+|.|.+|+|||||.-.+... ..+--.++=|+-|.+++--.++.+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 4566666666666889999999999999999988877 333345666777777776655543
No 377
>PRK03839 putative kinase; Provisional
Probab=94.75 E-value=0.024 Score=55.96 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|.|.|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999998
No 378
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.74 E-value=0.073 Score=60.36 Aligned_cols=85 Identities=20% Similarity=0.279 Sum_probs=48.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcccc--chHHHHHHHHHHHHHccc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG--DVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~l~~~l~~~~ 170 (977)
-.++.|.|.+|+|||||+.+++.. ...-..++|++..+. ...+... ++.++..... .......+.+.+.+++.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees--~~qi~~r-a~rlg~~~~~l~~~~e~~l~~i~~~i~~~~ 156 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES--ASQIKLR-AERLGLPSDNLYLLAETNLEAILATIEEEK 156 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc--HHHHHHH-HHHcCCChhcEEEeCCCCHHHHHHHHHhhC
Confidence 459999999999999999999887 333346788876543 3333222 3444432110 000011233444444445
Q ss_pred eEEEEecCccc
Q 002037 171 RVLIILDDLWG 181 (977)
Q Consensus 171 ~~LlvlDdv~~ 181 (977)
.-++|+|.+..
T Consensus 157 ~~lVVIDSIq~ 167 (446)
T PRK11823 157 PDLVVIDSIQT 167 (446)
T ss_pred CCEEEEechhh
Confidence 66788887643
No 379
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.74 E-value=0.085 Score=58.83 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHHhhc-------C-----C--CceeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 73 LKSALEVIKSVMKLLKD-------N-----S--ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~-------~-----~--~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
++|.++.++.+...+.. . + ..-..+.++|+.|+|||++|+.++.. ...|
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf 136 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPF 136 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCc
Confidence 67888888877544411 1 1 01356899999999999999999877 4343
No 380
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.71 E-value=0.34 Score=43.46 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=32.5
Q ss_pred ccchHHHHHHHHHHhh----cC-CCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLK----DN-SISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~----~~-~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|..-..+.+++++. +. ....-|++.+|..|+|||.+|+.+++.
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 5566655666665553 22 234669999999999999998888876
No 381
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.69 E-value=0.067 Score=50.13 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=31.0
Q ss_pred EEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHH
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~ 140 (977)
|.++|..|+|||++|+.+++... ....-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~--~~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG--RPVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT--CEEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhh--cceEEEEecccccccccee
Confidence 67999999999999999998731 1234467787777776654
No 382
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.68 E-value=0.014 Score=34.57 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=13.1
Q ss_pred CccEEEccCCCCcccCccccC
Q 002037 512 ELEVLILKGSRIVELPNGIGT 532 (977)
Q Consensus 512 ~L~~L~l~~~~l~~lp~~i~~ 532 (977)
+|++|++++|+++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366666666666666665544
No 383
>PRK00625 shikimate kinase; Provisional
Probab=94.66 E-value=0.026 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|.++||.|+||||+|+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999887
No 384
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.59 E-value=0.17 Score=52.37 Aligned_cols=88 Identities=25% Similarity=0.278 Sum_probs=55.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc-----CCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc-------cccchH------
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQE-----IPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------ 155 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~-----~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------ 155 (977)
+.++|.|-.|+|||+|+..+.++. .+-+.++++-+.+.. ++.++..++...-... ..+...
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 378999999999999999988772 235778888887654 4566666555431110 001111
Q ss_pred HHHHHHHHHHHH-c-cceEEEEecCcccc
Q 002037 156 VLRAAFLSERLK-R-QKRVLIILDDLWGK 182 (977)
Q Consensus 156 ~~~~~~l~~~l~-~-~~~~LlvlDdv~~~ 182 (977)
...+..+-+++. + ++++|+++||+...
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 111223445554 3 79999999998654
No 385
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.58 E-value=0.12 Score=58.79 Aligned_cols=39 Identities=36% Similarity=0.400 Sum_probs=29.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
-.++.|.|.+|+|||||+.+++.. ...-..++|++..+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs 133 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES 133 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence 459999999999999999999877 222246788876543
No 386
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.56 E-value=0.22 Score=47.24 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999999887
No 387
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.56 E-value=0.31 Score=50.19 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=30.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
-.++.|.|.+|+||||+|.+++.. ...-..++|++....
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~ 59 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES 59 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence 459999999999999999988765 333457888877543
No 388
>PRK08149 ATP synthase SpaL; Validated
Probab=94.55 E-value=0.15 Score=56.65 Aligned_cols=87 Identities=21% Similarity=0.339 Sum_probs=50.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCC-CCCHHHHHHHHHHHhhhc-------cccchH------HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTE-------LEGDVE------VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~ 160 (977)
..++|+|..|+|||||+..+++..+. +.++...+.. ..++.++..+........ ..+... ...+.
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~~~-dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~a~ 230 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHSEA-DVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALVAT 230 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCCCC-CeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHHHH
Confidence 38899999999999999999886332 3333444443 334555555555432210 001111 11122
Q ss_pred HHHHHH-HccceEEEEecCcccc
Q 002037 161 FLSERL-KRQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l-~~~~~~LlvlDdv~~~ 182 (977)
.+-+++ .+++++|+++||+...
T Consensus 231 tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 231 TVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHcCCCEEEEccchHHH
Confidence 233444 2589999999998654
No 389
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.54 E-value=0.024 Score=50.19 Aligned_cols=21 Identities=52% Similarity=0.858 Sum_probs=19.2
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~ 117 (977)
|-|+|.+|+|||++|+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998877
No 390
>PRK05439 pantothenate kinase; Provisional
Probab=94.54 E-value=0.2 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.2
Q ss_pred CceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 92 ISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 92 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
....+|+|.|..|+||||+|+.+...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999998876
No 391
>PRK06217 hypothetical protein; Validated
Probab=94.53 E-value=0.06 Score=53.18 Aligned_cols=32 Identities=25% Similarity=0.374 Sum_probs=25.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh--cCCC--CEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ--EIPF--DKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~--~~~f--~~~~wv 127 (977)
.|.|.|.+|+||||+|+++... ..+| |..+|.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~ 38 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWL 38 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeec
Confidence 5899999999999999999988 3333 455663
No 392
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.52 E-value=0.23 Score=52.72 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=35.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
.++.|.|.+|+||||+|.+++.. ..+=..++|++.... ..++...+..
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~--~~~~~~r~~~ 80 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP--VVRTARRLLG 80 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC--HHHHHHHHHH
Confidence 48899999999999999998877 332357889887663 3445555443
No 393
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.51 E-value=0.031 Score=56.00 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++++|.|+.|.||||+.+.++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999988754
No 394
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.50 E-value=0.21 Score=49.56 Aligned_cols=111 Identities=16% Similarity=0.230 Sum_probs=61.9
Q ss_pred cccchHHHHHHHHH----HhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002037 72 PLKSALEVIKSVMK----LLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFL 146 (977)
Q Consensus 72 ~~~gr~~~~~~l~~----~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 146 (977)
.+.|-+...+.+++ .+..-. .--|.+||.-|+|||+|++++.+. .+..-. -|.|+..
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~p--ANnVLLwGaRGtGKSSLVKA~~~e~~~~glr--LVEV~k~-------------- 122 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGLP--ANNVLLWGARGTGKSSLVKALLNEYADEGLR--LVEVDKE-------------- 122 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCCc--ccceEEecCCCCChHHHHHHHHHHHHhcCCe--EEEEcHH--------------
Confidence 34555555555554 222222 447899999999999999999988 433322 2323221
Q ss_pred hhccccchHHHHHHHHHHHHH-ccceEEEEecCcccc---ccccccccCCC---CCCCCeEEEEecCCh
Q 002037 147 NTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGK---LDLAVVGIPYG---EEHKGCKIILTSRFK 208 (977)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~---~~~~~l~~~~~---~~~~gs~iivTtR~~ 208 (977)
+......+.+.|+ ...||.|..||..=+ .....++..+. ...+...++..|.++
T Consensus 123 --------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 --------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred --------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 1111223333343 478999999998533 33444443332 233445556555554
No 395
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.49 E-value=0.05 Score=57.22 Aligned_cols=86 Identities=21% Similarity=0.288 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhcCCCC-EEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHH
Q 002037 80 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFD-KVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLR 158 (977)
Q Consensus 80 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 158 (977)
...+++.+.... +-+.++|+.|+|||++++.......... .+.-++.+...+...+++.|-..+......
T Consensus 22 ~~~ll~~l~~~~---~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 22 YSYLLDLLLSNG---RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHHCT---EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTE------
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCC------
Confidence 345566665554 4679999999999999999887622222 234455555444443332221111110000
Q ss_pred HHHHHHHH--HccceEEEEecCcc
Q 002037 159 AAFLSERL--KRQKRVLIILDDLW 180 (977)
Q Consensus 159 ~~~l~~~l--~~~~~~LlvlDdv~ 180 (977)
.+ ..+|+.++++||+.
T Consensus 93 ------~~gP~~~k~lv~fiDDlN 110 (272)
T PF12775_consen 93 ------VYGPPGGKKLVLFIDDLN 110 (272)
T ss_dssp ------EEEEESSSEEEEEEETTT
T ss_pred ------CCCCCCCcEEEEEecccC
Confidence 00 13688899999984
No 396
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.49 E-value=0.029 Score=55.77 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.++..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999875
No 397
>PRK13949 shikimate kinase; Provisional
Probab=94.48 E-value=0.082 Score=51.29 Aligned_cols=23 Identities=39% Similarity=0.401 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.|.|+|+.|+||||+|+.+++.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999987
No 398
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.48 E-value=0.24 Score=55.00 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.++|..|+||||+|..++..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999999988866
No 399
>PRK04040 adenylate kinase; Provisional
Probab=94.47 E-value=0.032 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.677 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|+|++|+||||+++.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999999887
No 400
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.45 E-value=0.21 Score=56.37 Aligned_cols=55 Identities=16% Similarity=0.223 Sum_probs=34.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCC--CCEEEEEEeCCC-CCHHHHHHHHHHHhhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIP--FDKVIFVRVTQT-PDVKRVQDEIARFLNT 148 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~--f~~~~wv~~~~~-~~~~~~~~~i~~~l~~ 148 (977)
-.|++++|+.|+||||++.+++.. ... -..+..+..... ....+-++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGV 314 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGV 314 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCC
Confidence 369999999999999999999976 222 224555654431 1223334444555443
No 401
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.44 E-value=0.045 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++|+|..|+||||||+.++.-
T Consensus 35 ~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 35 TLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EEEEEcCCCCCHHHHHHHHhcc
Confidence 8999999999999999999987
No 402
>PRK13768 GTPase; Provisional
Probab=94.44 E-value=0.16 Score=53.06 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=26.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEe
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 129 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~ 129 (977)
..++.|.|+||+||||++..+... ...-..++.|+.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~ 38 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNL 38 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEEC
Confidence 468999999999999999888876 322234455544
No 403
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.43 E-value=0.11 Score=56.80 Aligned_cols=73 Identities=23% Similarity=0.370 Sum_probs=46.5
Q ss_pred ccchHHHHHHHHHHhhcC------------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCC---CEEEEEEeC-CCCCH
Q 002037 73 LKSALEVIKSVMKLLKDN------------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF---DKVIFVRVT-QTPDV 135 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f---~~~~wv~~~-~~~~~ 135 (977)
++|+++.++.+.-++... ....+-|.++|+.|+|||++|+.++.. ...| +..-++... ...+.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 678888888776555431 112467899999999999999999998 4444 222222222 12356
Q ss_pred HHHHHHHHHH
Q 002037 136 KRVQDEIARF 145 (977)
Q Consensus 136 ~~~~~~i~~~ 145 (977)
..+.+.+...
T Consensus 94 E~i~r~l~e~ 103 (441)
T TIGR00390 94 ESMVRDLTDA 103 (441)
T ss_pred HHHHHHHHHH
Confidence 6666665543
No 404
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.42 E-value=0.19 Score=53.73 Aligned_cols=87 Identities=17% Similarity=0.315 Sum_probs=49.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeC-CCCCHHHHHHHHHHHhhhc-------cccchH------HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVT-QTPDVKRVQDEIARFLNTE-------LEGDVE------VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~ 160 (977)
..++|.|..|+|||||++.+.+.... +..+..-+. ...++.++.......-+.. ..+... ...+.
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~~-~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~ 148 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTTA-DVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYTAT 148 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCC-CEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999887333 233333333 3345555555444322110 001111 11112
Q ss_pred HHHHHH-HccceEEEEecCcccc
Q 002037 161 FLSERL-KRQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l-~~~~~~LlvlDdv~~~ 182 (977)
.+-+++ .+++.+|+++||+...
T Consensus 149 ~~AEyfr~~g~~Vll~~Dsltr~ 171 (326)
T cd01136 149 AIAEYFRDQGKDVLLLMDSLTRF 171 (326)
T ss_pred HHHHHHHHcCCCeEEEeccchHH
Confidence 223333 2589999999998654
No 405
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.42 E-value=0.12 Score=51.90 Aligned_cols=86 Identities=24% Similarity=0.427 Sum_probs=52.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhhc-------cccchHHH------HHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTE-------LEGDVEVL------RAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~-------~~~~~~~~------~~~ 160 (977)
..++|.|.+|+|||+|+..+.+..+ -+.++++-+.+. ..+.++.+++...-... ..+..... ..-
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~-~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~a~ 94 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD-ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYTAL 94 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT-TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc-ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhccch
Confidence 3789999999999999999998843 244578877765 35556655554321110 11111111 111
Q ss_pred HHHHHHH-ccceEEEEecCccc
Q 002037 161 FLSERLK-RQKRVLIILDDLWG 181 (977)
Q Consensus 161 ~l~~~l~-~~~~~LlvlDdv~~ 181 (977)
.+-+++. +++.+|+++||+..
T Consensus 95 t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 95 TIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp HHHHHHHHTTSEEEEEEETHHH
T ss_pred hhhHHHhhcCCceeehhhhhHH
Confidence 2223332 58999999999854
No 406
>PRK05922 type III secretion system ATPase; Validated
Probab=94.41 E-value=0.18 Score=56.02 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=49.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhhcc-------ccchH------HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTEL-------EGDVE------VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~~-------~~~~~------~~~~~ 160 (977)
..++|.|..|+|||||++.+.+..+.+ ..+.+-+.+. ..+...+.+......... .+... ...+.
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~~~d-~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~a~ 236 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGSKST-INVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRAAM 236 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCCC-ceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHHHH
Confidence 378999999999999999999874333 3333333332 233444444433322110 01111 11122
Q ss_pred HHHHHHH-ccceEEEEecCcccc
Q 002037 161 FLSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
.+-+++. +++++|+++||+...
T Consensus 237 tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 237 TIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHcCCCEEEeccchhHH
Confidence 2334442 589999999999654
No 407
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.41 E-value=0.11 Score=61.41 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=50.2
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
+..++|+++.++.+...+.... .+.++|+.|+||||+|+.+++. ...|...+++. ....+...+++.++..++
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~----~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~-n~~~~~~~~~~~v~~~~g 91 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR----NVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP-NPEDPNMPRIVEVPAGEG 91 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC----CEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe-CCCCCchHHHHHHHHhhc
Confidence 4457788888887777666543 5669999999999999999988 44444444332 222344555677766665
Q ss_pred h
Q 002037 148 T 148 (977)
Q Consensus 148 ~ 148 (977)
.
T Consensus 92 ~ 92 (608)
T TIGR00764 92 R 92 (608)
T ss_pred h
Confidence 3
No 408
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.39 E-value=0.038 Score=56.34 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|.|.|++|+||||+|+.+++.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999887
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.34 E-value=0.18 Score=55.97 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=34.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh---cCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhhc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ---EIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTE 149 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~ 149 (977)
-.+++++|+.|+||||++..++.. ....+.+..+..... ....+-+...++.++..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp 250 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVS 250 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCc
Confidence 469999999999999999988876 222344555543331 12233344455555543
No 410
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=94.34 E-value=0.13 Score=57.07 Aligned_cols=88 Identities=17% Similarity=0.249 Sum_probs=49.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhc--------cccchH-----HHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTE--------LEGDVE-----VLRAAF 161 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~--------~~~~~~-----~~~~~~ 161 (977)
..++|.|..|+|||||++.+.........++...-.....+.++.++....-+.. .+.... ...+..
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~ 220 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTATA 220 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 4899999999999999998887743333443332233334455554433321110 011111 111222
Q ss_pred HHHHHH-ccceEEEEecCcccc
Q 002037 162 LSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 162 l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
+-+++. +++++|+++||+...
T Consensus 221 iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 221 IAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHcCCCEEEeccchhHH
Confidence 334442 589999999998654
No 411
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.33 E-value=0.19 Score=55.92 Aligned_cols=87 Identities=14% Similarity=0.237 Sum_probs=50.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc-------cccchH------HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~ 160 (977)
..++|+|..|+|||||++.+++..+. +.++++-+.+.. .+.++..+.+..-+.. ..+... ...+.
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~~~-d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~a~ 237 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNADA-DVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYLTL 237 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC-CEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHHHH
Confidence 48899999999999999999877433 344555565543 3444444333321110 001111 11112
Q ss_pred HHHHHH-HccceEEEEecCcccc
Q 002037 161 FLSERL-KRQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l-~~~~~~LlvlDdv~~~ 182 (977)
.+-+++ .+++.+|+++||+...
T Consensus 238 tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 238 AIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHCCCcEEEEEeCcHHH
Confidence 233444 2589999999999654
No 412
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.33 E-value=0.55 Score=47.77 Aligned_cols=56 Identities=23% Similarity=0.326 Sum_probs=38.6
Q ss_pred CCCCcccccchHHHHHHHHHHhhc---C--------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKD---N--------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
|...+..+-|-+..+++|-+...- . -...+=|.++|.+|.|||-||++|+|. ...|
T Consensus 180 P~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATF 247 (440)
T KOG0726|consen 180 PQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATF 247 (440)
T ss_pred chhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence 444455555666666666654421 1 123567889999999999999999998 6555
No 413
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.94 Score=52.65 Aligned_cols=100 Identities=21% Similarity=0.282 Sum_probs=61.9
Q ss_pred CCCCCcccccchHHHHHHHHHHhhc---------CC-CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCC
Q 002037 65 IPTPEFVPLKSALEVIKSVMKLLKD---------NS-ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 133 (977)
Q Consensus 65 ~~~~~~~~~~gr~~~~~~l~~~l~~---------~~-~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~ 133 (977)
.|.-...++-|-++.+.+|.+-+.- .+ ....=|.++|++|.|||-+|++|+.. .- -|++|-.+.
T Consensus 666 IPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----~FlSVKGPE 740 (953)
T KOG0736|consen 666 IPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----NFLSVKGPE 740 (953)
T ss_pred CCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-----eEEeecCHH
Confidence 3444444566788888888876532 11 12347889999999999999999987 32 345555431
Q ss_pred CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 134 DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 134 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
+++ ..+| .+ ++....+.++-+..+++.|+||+++..
T Consensus 741 ----LLN---MYVG-----qS-E~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 741 ----LLN---MYVG-----QS-EENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred ----HHH---HHhc-----ch-HHHHHHHHHHhhccCCeEEEecccccc
Confidence 111 1111 11 222334445555679999999998754
No 414
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.32 E-value=0.16 Score=55.64 Aligned_cols=74 Identities=20% Similarity=0.381 Sum_probs=47.6
Q ss_pred ccchHHHHHHHHHHhhcC--------C----CceeEEEEEcCCCChHHHHHHHHHhh-cCCC---CEEEEEEeC-CCCCH
Q 002037 73 LKSALEVIKSVMKLLKDN--------S----ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF---DKVIFVRVT-QTPDV 135 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~--------~----~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f---~~~~wv~~~-~~~~~ 135 (977)
++|.++.++.+..++... . ...+.|.++|+.|+|||++|+.++.. ...| +..-|.... ...+.
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 678888888887776431 1 11367899999999999999999988 4333 322222221 12355
Q ss_pred HHHHHHHHHHh
Q 002037 136 KRVQDEIARFL 146 (977)
Q Consensus 136 ~~~~~~i~~~l 146 (977)
..+.+.+....
T Consensus 97 e~~ir~L~~~A 107 (443)
T PRK05201 97 ESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHH
Confidence 66666665543
No 415
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.32 E-value=0.14 Score=57.32 Aligned_cols=88 Identities=20% Similarity=0.371 Sum_probs=55.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc-------cccchH------HHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------VLR 158 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~ 158 (977)
+.++|.|.+|+|||||+.++.+. +.+-+.++++-+.+.. .+.++..++...-... ..+... ...
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 37899999999999999998887 4456788887776543 4555555554321110 001111 111
Q ss_pred HHHHHHHHH-c-cceEEEEecCcccc
Q 002037 159 AAFLSERLK-R-QKRVLIILDDLWGK 182 (977)
Q Consensus 159 ~~~l~~~l~-~-~~~~LlvlDdv~~~ 182 (977)
+..+-++++ + ++++|+++|++...
T Consensus 224 a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccchHH
Confidence 223444553 3 79999999999543
No 416
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.31 E-value=0.016 Score=57.26 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~ 116 (977)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 478999999999999999883
No 417
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.29 E-value=0.081 Score=55.37 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 47899999999999999999987
No 418
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.23 Score=59.07 Aligned_cols=83 Identities=16% Similarity=0.223 Sum_probs=47.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCC-CCEEEEEEeCCCCC--HHHHHHHHHHHhhhcccc-chHHHHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIP-FDKVIFVRVTQTPD--VKRVQDEIARFLNTELEG-DVEVLRAAFLSERLK 167 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~-f~~~~wv~~~~~~~--~~~~~~~i~~~l~~~~~~-~~~~~~~~~l~~~l~ 167 (977)
-++|+++|+.|+||||.+.+++.. ..+ ...+..++... +. ..+-++..++.++..... .+... .....+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~~~~~-l~~al~~~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVKDAAD-LRFALAALG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccCCHHH-HHHHHHHhc
Confidence 469999999999999999998876 222 23555655442 22 334455556666543322 12222 222223333
Q ss_pred ccceEEEEecCcc
Q 002037 168 RQKRVLIILDDLW 180 (977)
Q Consensus 168 ~~~~~LlvlDdv~ 180 (977)
.+=++++|-..
T Consensus 263 --~~D~VLIDTAG 273 (767)
T PRK14723 263 --DKHLVLIDTVG 273 (767)
T ss_pred --CCCEEEEeCCC
Confidence 23477778765
No 419
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.0076 Score=57.76 Aligned_cols=69 Identities=19% Similarity=0.210 Sum_probs=50.6
Q ss_pred cCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccc
Q 002037 832 FFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDS 908 (977)
Q Consensus 832 ~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 908 (977)
.+++++.|.+.+|..+.+.......+-.++|+.|+|++|+.|++-. ...+..+++|+.|.|.++|....
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G--------L~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG--------LACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH--------HHHHHHhhhhHHHHhcCchhhhc
Confidence 4788889999999998887544444567888999999998887631 22456678888888888775543
No 420
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.19 E-value=0.076 Score=54.62 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=50.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCC-CCEEEEEEeCCCCCHHHHHHHHHHHhhhcc--------------c------
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIP-FDKVIFVRVTQTPDVKRVQDEIARFLNTEL--------------E------ 151 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~-f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~--------------~------ 151 (977)
-.++.|.|.+|+|||++|.++... ... =..++|++...+. ..+.+.+. .++.+. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~~~ 95 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPERIGW 95 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGST-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEecccccccc
Confidence 459999999999999999997766 333 3577888876543 44444432 222100 0
Q ss_pred -cchHHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 152 -GDVEVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 152 -~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
..+.......+.+.++..+...+|+|.+...
T Consensus 96 ~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 96 SPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1122334455555555445578999987543
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=94.19 E-value=0.062 Score=54.52 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
++++|+|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999864
No 422
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.19 E-value=0.042 Score=55.03 Aligned_cols=29 Identities=34% Similarity=0.370 Sum_probs=24.0
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
...+|.++||+|.||||+.+.++.. ...+
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 3568899999999999999999987 4444
No 423
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.15 E-value=0.18 Score=56.26 Aligned_cols=88 Identities=17% Similarity=0.321 Sum_probs=55.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc-------cccchH------HHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------VLR 158 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~ 158 (977)
+.++|.|.+|+|||+|+.++... +.+-+.++|+-+.+.. .+.++.+++...-... ..+... ...
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~ 218 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT 218 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence 37899999999999999998877 3345788888776654 4555655554421110 001111 112
Q ss_pred HHHHHHHHH--ccceEEEEecCcccc
Q 002037 159 AAFLSERLK--RQKRVLIILDDLWGK 182 (977)
Q Consensus 159 ~~~l~~~l~--~~~~~LlvlDdv~~~ 182 (977)
+..+-++++ +++++|+++||+...
T Consensus 219 a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecChHHH
Confidence 233445554 479999999998654
No 424
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.15 E-value=0.034 Score=54.54 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|.+|+||||+|+.++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999887
No 425
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.14 E-value=0.033 Score=55.98 Aligned_cols=22 Identities=45% Similarity=0.848 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|..|+||||+|+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999776
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.14 E-value=0.057 Score=53.38 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=31.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
.++|.|+|+.|+|||||++.+... ...|..+++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeeccc
Confidence 468999999999999999999998 7788766666544
No 427
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.12 E-value=0.097 Score=51.28 Aligned_cols=119 Identities=20% Similarity=0.166 Sum_probs=64.4
Q ss_pred HHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh----cCCCC--EEEEEEeCCCCC---HHHHHHHHHHHhhhccccc
Q 002037 83 VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPFD--KVIFVRVTQTPD---VKRVQDEIARFLNTELEGD 153 (977)
Q Consensus 83 l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~f~--~~~wv~~~~~~~---~~~~~~~i~~~l~~~~~~~ 153 (977)
++.-+-+.. .--..|.|++|+||||+.+.++.. .+.|- .+.-|+-+.... ..--+.+++... +..
T Consensus 128 li~~ly~~g--~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~----dVl 201 (308)
T COG3854 128 LIKDLYQNG--WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRM----DVL 201 (308)
T ss_pred HHHHHHhcC--ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhh----hhc
Confidence 444444444 445789999999999999998877 34553 233333222100 000011111111 111
Q ss_pred hHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHH
Q 002037 154 VEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEV 210 (977)
Q Consensus 154 ~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 210 (977)
......+-+....+...+=.+|.|++....+..++... ...|-++|.|..-..+
T Consensus 202 d~cpk~~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta---~~~GVkli~TaHG~~i 255 (308)
T COG3854 202 DPCPKAEGMMMAIRSMSPEVIIVDEIGTEEDALAILTA---LHAGVKLITTAHGNGI 255 (308)
T ss_pred ccchHHHHHHHHHHhcCCcEEEEeccccHHHHHHHHHH---HhcCcEEEEeeccccH
Confidence 11222333334444567789999999988766555433 2457778777764443
No 428
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.12 E-value=0.04 Score=54.28 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999999887
No 429
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.10 E-value=0.056 Score=52.71 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=27.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVR 128 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~ 128 (977)
|++|+|+.|+|||||.+.+..-...=++.+|+.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~ 62 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcCCCCceEEEC
Confidence 999999999999999999977655556778873
No 430
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=94.07 E-value=0.19 Score=55.98 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-..++|.|..|+|||||++.+.+.
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~ 178 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRY 178 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcc
Confidence 358999999999999999998876
No 431
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.06 E-value=0.22 Score=57.20 Aligned_cols=173 Identities=18% Similarity=0.179 Sum_probs=86.2
Q ss_pred cccccchH---HHHHHHHHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHH
Q 002037 70 FVPLKSAL---EVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRV 138 (977)
Q Consensus 70 ~~~~~gr~---~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~ 138 (977)
|..+.|.+ +++.++++.|.+.. .-++=|.++|++|.|||.||++++.. .-.| .+.|... ..+.
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF-----f~iSGS~-FVem 222 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FSISGSD-FVEM 222 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCc-----eeccchh-hhhh
Confidence 33455555 45555666666543 22567899999999999999999998 4343 1122210 0000
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc----------------cccccccCCCCCC--CCeE
Q 002037 139 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------------DLAVVGIPYGEEH--KGCK 200 (977)
Q Consensus 139 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~~~~~--~gs~ 200 (977)
+ .+. ...+...+...-+++-++++++|.++... .+.++......++ .|-.
T Consensus 223 f------VGv------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvi 290 (596)
T COG0465 223 F------VGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVI 290 (596)
T ss_pred h------cCC------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceE
Confidence 0 000 01122222222233567999999876431 1222222222222 3444
Q ss_pred EEEecCChHHHh-----hccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 201 IILTSRFKEVCD-----EMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 201 iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
|+..|...+|.. .-.-++.+.++.-+-..-.++++-++....-. ...+. +.|++.+-|.-
T Consensus 291 viaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl-~~iAr~tpGfs 355 (596)
T COG0465 291 VIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDL-KKIARGTPGFS 355 (596)
T ss_pred EEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCH-HHHhhhCCCcc
Confidence 555555555632 11223456666666666667777555422211 11111 22677776654
No 432
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.05 E-value=0.16 Score=56.24 Aligned_cols=87 Identities=20% Similarity=0.311 Sum_probs=51.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc-------cccchH------HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE-------LEGDVE------VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~ 160 (977)
..++|.|..|+|||||++.+++.... +.++.+-+.+.. .+.++...+...-+.. ..+... ...+.
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~~-dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~A~ 241 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTTA-DVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCETAT 241 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCCC-CEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876333 455666666543 3444555543321110 001111 11112
Q ss_pred HHHHHHH-ccceEEEEecCcccc
Q 002037 161 FLSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
.+-+++. +++++|+++||+...
T Consensus 242 tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 242 TIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHcCCCEEEEEcChHHH
Confidence 2334442 589999999998654
No 433
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.04 E-value=0.042 Score=53.89 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 434
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.03 E-value=0.42 Score=53.46 Aligned_cols=37 Identities=27% Similarity=0.255 Sum_probs=26.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c-CCCCEEEEEEeC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRVT 130 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~-~~f~~~~wv~~~ 130 (977)
..++.++|.+|+||||.|..++.. . +.-..+.-|++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 579999999999999999888876 3 222234445443
No 435
>PRK09099 type III secretion system ATPase; Provisional
Probab=94.01 E-value=0.2 Score=55.97 Aligned_cols=88 Identities=22% Similarity=0.259 Sum_probs=50.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhc-------cccchH------HHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTE-------LEGDVE------VLRAAF 161 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~-------~~~~~~------~~~~~~ 161 (977)
..++|.|..|+|||||++.++.....-.++++..-.....+.++.+.+...-... ..+... ...+..
T Consensus 164 q~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a~~~a~t 243 (441)
T PRK09099 164 QRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYVATA 243 (441)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999987732223444443334445555555554332110 001111 111122
Q ss_pred HHHHHH-ccceEEEEecCcccc
Q 002037 162 LSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 162 l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
+-+++. +++.+|+++||+...
T Consensus 244 iAEyfrd~G~~VLl~~DslTr~ 265 (441)
T PRK09099 244 IAEYFRDRGLRVLLMMDSLTRF 265 (441)
T ss_pred HHHHHHHcCCCEEEeccchhHH
Confidence 334442 589999999998654
No 436
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.99 E-value=0.09 Score=51.75 Aligned_cols=45 Identities=18% Similarity=0.256 Sum_probs=32.7
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++..+.|.+..+..+.-..... +-+.++|..|+|||++|+.+..-
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~----h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG----HHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC------EEEES-CCCTHHHHHHHHHHC
T ss_pred ChhhhcCcHHHHHHHHHHHcCC----CCeEEECCCCCCHHHHHHHHHHh
Confidence 3556788888777776555543 47999999999999999999865
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.99 E-value=0.22 Score=60.57 Aligned_cols=174 Identities=21% Similarity=0.243 Sum_probs=89.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-----cCC------------CCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-----EIP------------FDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEV 156 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-----~~~------------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~ 156 (977)
.+++.|+|+.+.||||+.+.+.-. ... |+ .++..+....++..-.......+
T Consensus 327 ~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lStfS~~m---------- 395 (782)
T PRK00409 327 KTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLSTFSGHM---------- 395 (782)
T ss_pred ceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhHHHHHH----------
Confidence 468899999999999999887643 111 11 23334443333322211111111
Q ss_pred HHHHHHHHHHHccceEEEEecCccccccc---ccc----ccCCCCCCCCeEEEEecCChHHHhhccCCce---EEccCCC
Q 002037 157 LRAAFLSERLKRQKRVLIILDDLWGKLDL---AVV----GIPYGEEHKGCKIILTSRFKEVCDEMESTNY---VQVEELT 226 (977)
Q Consensus 157 ~~~~~l~~~l~~~~~~LlvlDdv~~~~~~---~~l----~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~---~~l~~L~ 226 (977)
.....+...+ .++-|+++|+...-.+. ..+ ...+ ...|+.+|+||...++......... ..+. ++
T Consensus 396 ~~~~~Il~~~--~~~sLvLlDE~~~GtDp~eg~ala~aile~l--~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d 470 (782)
T PRK00409 396 TNIVRILEKA--DKNSLVLFDELGAGTDPDEGAALAISILEYL--RKRGAKIIATTHYKELKALMYNREGVENASVE-FD 470 (782)
T ss_pred HHHHHHHHhC--CcCcEEEecCCCCCCCHHHHHHHHHHHHHHH--HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Ee
Confidence 1111122222 46789999998654221 122 1112 1247889999999887654332211 1111 11
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhh
Q 002037 227 DEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKA 289 (977)
Q Consensus 227 ~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~ 289 (977)
.+.-.-.+.-..+ .. -...|-.|++++ |+|-.+.--|.-+..........++.++..
T Consensus 471 ~~~l~~~Ykl~~G-~~----g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 471 EETLRPTYRLLIG-IP----GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred cCcCcEEEEEeeC-CC----CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1110000111111 11 123467777776 888888888887765555566666666554
No 438
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=93.98 E-value=0.049 Score=53.48 Aligned_cols=22 Identities=41% Similarity=0.767 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|..|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 439
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.21 Score=49.37 Aligned_cols=52 Identities=17% Similarity=0.291 Sum_probs=33.0
Q ss_pred cceEEEEecCccccccccccccC---C-CCCCCCeEEEEecCChHHHhhccCCceE
Q 002037 169 QKRVLIILDDLWGKLDLAVVGIP---Y-GEEHKGCKIILTSRFKEVCDEMESTNYV 220 (977)
Q Consensus 169 ~~~~LlvlDdv~~~~~~~~l~~~---~-~~~~~gs~iivTtR~~~v~~~~~~~~~~ 220 (977)
-++-+.|||..++--|.+++..- . .-..+|+-+++.|..+.++.....+.++
T Consensus 161 lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 161 LEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred cCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 46789999998876555544211 0 0123466678888888888777655444
No 440
>PRK13947 shikimate kinase; Provisional
Probab=93.95 E-value=0.043 Score=53.61 Aligned_cols=22 Identities=41% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-|.|+|++|+||||+|+.+++.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~ 24 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATT 24 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 4899999999999999999988
No 441
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.92 E-value=0.045 Score=53.64 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999887
No 442
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.90 E-value=0.09 Score=56.15 Aligned_cols=47 Identities=28% Similarity=0.367 Sum_probs=34.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~ 140 (977)
.+++.+.|.|||||||+|.+.+-. ......+.-|+.....+...++.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCCchHhhhc
Confidence 579999999999999999987666 22225577777766655555444
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=93.90 E-value=0.072 Score=56.10 Aligned_cols=40 Identities=20% Similarity=0.321 Sum_probs=34.7
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
.-+++.|+|.+|+|||++|.++... ......++||+..+.
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 3569999999999999999999988 555788999988774
No 444
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.89 E-value=1.7 Score=46.81 Aligned_cols=46 Identities=15% Similarity=0.130 Sum_probs=32.9
Q ss_pred eEEccCCCHHHHHHHHHHhcCCC--CCChhhHHHHHHHHHHhCCChhH
Q 002037 219 YVQVEELTDEDRLILFKKKAGLP--EGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 219 ~~~l~~L~~~~~~~lf~~~~~~~--~~~~~~~~~~~~i~~~~~glPLa 264 (977)
++++++++.+|+..++.-+.... ......+...+++.-..+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 78999999999999998776521 11134455666777777999854
No 445
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=93.87 E-value=0.13 Score=57.14 Aligned_cols=49 Identities=22% Similarity=0.245 Sum_probs=35.4
Q ss_pred ccchHHHHHHHHHHhh-------c---CC--C----ceeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 73 LKSALEVIKSVMKLLK-------D---NS--I----SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~-------~---~~--~----~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
++|.++.++.+...+. . .. . .-..|.++|+.|+|||++|+.++.. ...|
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 5788888888765551 1 11 0 1247999999999999999999977 4444
No 446
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.86 E-value=0.05 Score=50.81 Aligned_cols=33 Identities=30% Similarity=0.505 Sum_probs=26.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|..|+|||||.+.++.......+.+++
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~ 44 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILI 44 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEE
T ss_pred CEEEEEccCCCccccceeeeccccccccccccc
Confidence 389999999999999999999873334455554
No 447
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.85 E-value=0.041 Score=52.35 Aligned_cols=22 Identities=41% Similarity=0.570 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++.|.|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999886
No 448
>PLN02318 phosphoribulokinase/uridine kinase
Probab=93.79 E-value=0.074 Score=60.50 Aligned_cols=32 Identities=34% Similarity=0.581 Sum_probs=26.0
Q ss_pred HhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 86 LLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 86 ~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+..+..+..+|+|.|..|+||||||+.+...
T Consensus 57 lL~~~~~~riIIGIaGpSGSGKTTLAk~Lagl 88 (656)
T PLN02318 57 LLAQKNDGIILVGVAGPSGAGKTVFTEKVLNF 88 (656)
T ss_pred HHHhcCCCeEEEEEECCCCCcHHHHHHHHHhh
Confidence 33334445889999999999999999999876
No 449
>PRK14738 gmk guanylate kinase; Provisional
Probab=93.78 E-value=0.053 Score=54.67 Aligned_cols=29 Identities=14% Similarity=0.423 Sum_probs=24.1
Q ss_pred cCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 89 DNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 89 ~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++....+.|+|+|++|+|||||++.+...
T Consensus 8 ~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 8 NKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 33345779999999999999999999765
No 450
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.78 E-value=0.05 Score=50.70 Aligned_cols=22 Identities=36% Similarity=0.807 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999886
No 451
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.78 E-value=0.044 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|.|.|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999987
No 452
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.75 E-value=0.046 Score=51.32 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=18.9
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 002037 96 IIGVYGSGGIGKTTLMKQVM 115 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~ 115 (977)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 453
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=0.0074 Score=57.86 Aligned_cols=68 Identities=22% Similarity=0.401 Sum_probs=31.1
Q ss_pred ccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCC
Q 002037 856 AHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPK 932 (977)
Q Consensus 856 ~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 932 (977)
+..+++++.|.+.+|..+..-.- + .-.+..|+|+.|+|++||.+++-....+ ..+++|+.|.|.+-|.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L----~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L--~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCL----E---RLGGLAPSLQDLDLSGCPRITDGGLACL--LKLKNLRRLHLYDLPY 188 (221)
T ss_pred HhccchhhhheeccccchhhHHH----H---HhcccccchheeeccCCCeechhHHHHH--HHhhhhHHHHhcCchh
Confidence 44555555555556655433210 0 0012455566666666665554322111 1245555555555443
No 454
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.66 E-value=2.3 Score=45.31 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC---------CCCEEEEEEeCC-CCCHHHHHHHHHHHhhh
Q 002037 81 KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI---------PFDKVIFVRVTQ-TPDVKRVQDEIARFLNT 148 (977)
Q Consensus 81 ~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~---------~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~ 148 (977)
+.+.+.+..+. -.++..++|..|.||+++|..+.+. .. +-+.+.+++..+ ...+.++. ++.+.+..
T Consensus 6 ~~l~~~i~~~~-l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~ 83 (299)
T PRK07132 6 KFLDNSATQNK-ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYF 83 (299)
T ss_pred HHHHHHHHhCC-CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhcc
Confidence 34444554433 2457789999999999999998876 21 111233332211 12222222 22222211
Q ss_pred ccccchHHHHHHHHHHHHHccceEEEEecCcccccc--ccccccCCCCCCCCeEEEEecCC-hHHHhh-ccCCceEEccC
Q 002037 149 ELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--LAVVGIPYGEEHKGCKIILTSRF-KEVCDE-MESTNYVQVEE 224 (977)
Q Consensus 149 ~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~~~~~~~gs~iivTtR~-~~v~~~-~~~~~~~~l~~ 224 (977)
.. ...+++-++|+|+++...+ ..++...+-...+++.+|++|.+ ..+... ......+++.+
T Consensus 84 ~~---------------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~ 148 (299)
T PRK07132 84 SS---------------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148 (299)
T ss_pred CC---------------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCC
Confidence 00 0125777888899876532 33343344444556666665544 334332 23346899999
Q ss_pred CCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 225 LTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 225 L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
++.++..+.+... + . .++.+..++...+|.=-|+..
T Consensus 149 l~~~~l~~~l~~~-~---~---~~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 149 PDQQKILAKLLSK-N---K---EKEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred CCHHHHHHHHHHc-C---C---ChhHHHHHHHHcCCHHHHHHH
Confidence 9999998877764 2 1 123455666666663244444
No 455
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.63 E-value=0.051 Score=53.59 Aligned_cols=23 Identities=35% Similarity=0.706 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|+|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999886
No 456
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.62 E-value=0.31 Score=50.74 Aligned_cols=47 Identities=13% Similarity=0.258 Sum_probs=34.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
.++.|.|.+|+|||++|.+++.+ ..+=..++|++... +..++...+.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~~ 62 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRLL 62 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHHH
Confidence 49999999999999999998877 33234677877665 3445555543
No 457
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=93.62 E-value=0.25 Score=54.80 Aligned_cols=88 Identities=22% Similarity=0.240 Sum_probs=53.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCC-----CC---------EEEEEEeCCCCCHHHHHHHHHHHhh-hc-------ccc
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIP-----FD---------KVIFVRVTQTPDVKRVQDEIARFLN-TE-------LEG 152 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~-----f~---------~~~wv~~~~~~~~~~~~~~i~~~l~-~~-------~~~ 152 (977)
+.++|.|-+|+|||||+.++.+..+. .| .++++-+.+.....+.+.+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 47899999999999999999887332 23 5677777776555554444443332 11 001
Q ss_pred chH------HHHHHHHHHHHH--ccceEEEEecCcccc
Q 002037 153 DVE------VLRAAFLSERLK--RQKRVLIILDDLWGK 182 (977)
Q Consensus 153 ~~~------~~~~~~l~~~l~--~~~~~LlvlDdv~~~ 182 (977)
... ...+..+-+++. +++++|+++||+...
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~ 259 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSY 259 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHH
Confidence 111 111223445554 589999999998543
No 458
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=93.61 E-value=0.26 Score=55.00 Aligned_cols=87 Identities=17% Similarity=0.306 Sum_probs=49.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhhc--------cccchH-----HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNTE--------LEGDVE-----VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~~--------~~~~~~-----~~~~~ 160 (977)
..++|+|..|+|||||++.+.+.... +.++...+... .++.++...+...-... .+.... ...+.
T Consensus 169 qrigI~G~sG~GKSTLl~~I~g~~~~-dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~a~~~a~ 247 (451)
T PRK05688 169 QRLGLFAGTGVGKSVLLGMMTRFTEA-DIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLRAAMYCT 247 (451)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC-CEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHHHHHHHH
Confidence 47999999999999999999876332 34444434433 24445444444332111 011111 11112
Q ss_pred HHHHHHH-ccceEEEEecCcccc
Q 002037 161 FLSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
.+-+++. +++++|+++||+...
T Consensus 248 aiAEyfrd~G~~VLl~~DslTR~ 270 (451)
T PRK05688 248 RIAEYFRDKGKNVLLLMDSLTRF 270 (451)
T ss_pred HHHHHHHHCCCCEEEEecchhHH
Confidence 2334442 589999999998654
No 459
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.60 E-value=1.7 Score=45.67 Aligned_cols=38 Identities=8% Similarity=0.066 Sum_probs=28.9
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.-+++...+..+. -.+...++|+.|+||+++|..++..
T Consensus 5 ~~~~L~~~i~~~r-l~HAyLf~G~~G~Gk~~lA~~~A~~ 42 (290)
T PRK05917 5 AWEALIQRVRDQK-VPSAIILHGQDLSNLSARAYELASL 42 (290)
T ss_pred HHHHHHHHHHcCC-cCeeEeeECCCCCcHHHHHHHHHHH
Confidence 3455666666554 2457889999999999999998876
No 460
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.57 E-value=0.097 Score=52.45 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|+|++|+||||+|+.+...
T Consensus 24 ~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 24 GVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999999887
No 461
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.56 E-value=0.03 Score=33.15 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=15.0
Q ss_pred CccEEEccCCcCCCCCCCccc
Q 002037 467 EIKNLDLSSTNISSLAPSLPC 487 (977)
Q Consensus 467 ~Lr~L~l~~~~~~~lp~~~~~ 487 (977)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467788888877777776654
No 462
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.55 E-value=0.066 Score=51.49 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+++|+|..|+|||||++.+...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHH
Confidence 669999999999999999999977
No 463
>PRK14529 adenylate kinase; Provisional
Probab=93.54 E-value=0.21 Score=50.43 Aligned_cols=81 Identities=17% Similarity=0.154 Sum_probs=43.5
Q ss_pred EEEEcCCCChHHHHHHHHHhh--cCCCCE-E-EEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ--EIPFDK-V-IFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~--~~~f~~-~-~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
|.|.|++|+||||+|+.++.. -.+.+. . +.-.+..........++++.. ..-..++.....+.+++.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~----G~lvpdei~~~lv~~~l~~~~~~ 78 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDR----GDLVPDDITIPMILETLKQDGKN 78 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhc----cCcchHHHHHHHHHHHHhccCCC
Confidence 788999999999999999887 233321 1 111122222222222333221 12223344445566666532245
Q ss_pred EEEecCccc
Q 002037 173 LIILDDLWG 181 (977)
Q Consensus 173 LlvlDdv~~ 181 (977)
-+|||+.=.
T Consensus 79 g~iLDGfPR 87 (223)
T PRK14529 79 GWLLDGFPR 87 (223)
T ss_pred cEEEeCCCC
Confidence 688998643
No 464
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=93.52 E-value=0.31 Score=54.66 Aligned_cols=89 Identities=17% Similarity=0.231 Sum_probs=49.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHH--h----hhcc-ccchH------HHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARF--L----NTEL-EGDVE------VLRAA 160 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~--l----~~~~-~~~~~------~~~~~ 160 (977)
-..++|+|..|+|||||++.+.+....-.+++++.-....++.++....... + .... .+... ...+.
T Consensus 158 Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~~~~a~ 237 (438)
T PRK07721 158 GQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKGAYTAT 237 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHHHHHHH
Confidence 3589999999999999999988773333345554333333444443331111 1 1000 01111 11122
Q ss_pred HHHHHH-HccceEEEEecCcccc
Q 002037 161 FLSERL-KRQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l-~~~~~~LlvlDdv~~~ 182 (977)
.+-+++ .+++++|+++||+...
T Consensus 238 ~iAEyfr~~g~~Vll~~Dsltr~ 260 (438)
T PRK07721 238 AIAEYFRDQGLNVMLMMDSVTRV 260 (438)
T ss_pred HHHHHHHHCCCcEEEEEeChHHH
Confidence 233444 2589999999998543
No 465
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.49 E-value=0.26 Score=54.81 Aligned_cols=87 Identities=21% Similarity=0.349 Sum_probs=48.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhhh-------ccccchH------HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLNT-------ELEGDVE------VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~~-------~~~~~~~------~~~~~ 160 (977)
..++|.|..|+|||||++.+.+..+. +..+...+... ..+.++.......-.. ...+... ...+.
T Consensus 138 q~~~I~G~sG~GKTtLl~~I~~~~~~-~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~ 216 (411)
T TIGR03496 138 QRMGIFAGSGVGKSTLLGMMARYTEA-DVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLRAAFYAT 216 (411)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHHHHHHHH
Confidence 47999999999999999988877333 33334444443 2344444443332110 0011111 11122
Q ss_pred HHHHHHH-ccceEEEEecCcccc
Q 002037 161 FLSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
.+-+++. +++++|+++||+...
T Consensus 217 tiAEyfr~~G~~Vll~~Dsltr~ 239 (411)
T TIGR03496 217 AIAEYFRDQGKDVLLLMDSLTRF 239 (411)
T ss_pred HHHHHHHHCCCCEEEEEeChHHH
Confidence 2334442 589999999998643
No 466
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=93.47 E-value=0.11 Score=56.27 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=36.8
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
|..++|.++.+..++-.+.+.. ..-+.|.|..|+||||+++.+..-
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~--~g~vli~G~~G~gKttl~r~~~~~ 48 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPK--IGGVMVMGDRGTGKSTAVRALAAL 48 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCC--CCeEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899998888866666544 456789999999999999999755
No 467
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=93.46 E-value=0.49 Score=54.73 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=36.4
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..++|....+.++.+.+..-...-.-|.|.|..|+||+++|+.+.+.
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 445778777777777766432222457999999999999999999987
No 468
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.92 Score=52.71 Aligned_cols=170 Identities=14% Similarity=0.162 Sum_probs=88.0
Q ss_pred cccccchHHHHHHHHHHhhcCCC-------ceeEEEEEcCCCChHHHHHHHHHhh-cCCC-C--EEEEEEeCCCCCHHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSI-------SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF-D--KVIFVRVTQTPDVKRV 138 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~-------~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f-~--~~~wv~~~~~~~~~~~ 138 (977)
++...+++..+-.+.+.+..... -..++.++|..|+||||+++.++.. ..|+ . +.-.++-+...+-.++
T Consensus 400 ~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl 479 (953)
T KOG0736|consen 400 SLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKL 479 (953)
T ss_pred cCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHH
Confidence 34455677777778887765331 2458899999999999999999998 4443 2 2111211111111111
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc-------cc------cccccc-C-CCCCCCCeEEEE
Q 002037 139 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK-------LD------LAVVGI-P-YGEEHKGCKIIL 203 (977)
Q Consensus 139 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-------~~------~~~l~~-~-~~~~~~gs~iiv 203 (977)
. ....+-+.-.+..|.|-|++-. .+ ...... . +....++--++.
T Consensus 480 ~---------------------~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~ 538 (953)
T KOG0736|consen 480 Q---------------------AIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVA 538 (953)
T ss_pred H---------------------HHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEE
Confidence 1 1111111223444444443211 00 000000 0 111233444455
Q ss_pred ecCC-hHHHhhccC--CceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 204 TSRF-KEVCDEMES--TNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 204 TtR~-~~v~~~~~~--~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
||.+ +++...+.. -+.++++.+++++-.++|+.++.... -+.+..-+.+++++.|.-
T Consensus 539 t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs 598 (953)
T KOG0736|consen 539 TTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFS 598 (953)
T ss_pred eccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCC
Confidence 5433 333222222 25788999999999999999875222 222334567777777754
No 469
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.43 E-value=0.54 Score=50.61 Aligned_cols=37 Identities=27% Similarity=0.342 Sum_probs=27.6
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEe
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 129 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~ 129 (977)
...+++++|++|+||||++..++.. ...-..+..+..
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3579999999999999999999887 332224444543
No 470
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.42 E-value=0.097 Score=56.61 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=40.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.-.|..++|.++.+..++..+.+.. +.-|.|.|..|+||||+|+.+++-
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p~--~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDPK--IGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCCC--CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3446678899998888887776665 667779999999999999999776
No 471
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.41 E-value=0.06 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 37899999999999999999876
No 472
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=93.40 E-value=0.095 Score=47.13 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 82 SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 82 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+.+.+..+ .+|.+.|.=|+||||++|.++..
T Consensus 7 ~l~~~l~~g----~vi~L~GdLGaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 7 KLAQILKPG----DVILLSGDLGAGKTTFVRGLARA 38 (123)
T ss_dssp HHHHHHSS-----EEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhCCCC----CEEEEECCCCCCHHHHHHHHHHH
Confidence 344444443 49999999999999999999876
No 473
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.40 E-value=0.095 Score=49.90 Aligned_cols=31 Identities=23% Similarity=0.446 Sum_probs=24.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh--cCCCCEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIF 126 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~w 126 (977)
|++|+|+.|+||||++..+... ...+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 5899999999999999999988 334544443
No 474
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=93.39 E-value=0.21 Score=55.41 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+-.+|+|.+|.||||+.+.++.+
T Consensus 102 ~rygLiG~nG~Gkst~L~~i~~~ 124 (614)
T KOG0927|consen 102 RRYGLIGPNGSGKSTFLRAIAGR 124 (614)
T ss_pred ceEEEEcCCCCcHhHHHHHHhcC
Confidence 47899999999999999999988
No 475
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=93.38 E-value=0.066 Score=58.52 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+=+-|||..|.|||.|+-.+|+.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~ 85 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDS 85 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHh
Confidence 3678999999999999999999987
No 476
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=93.38 E-value=0.3 Score=54.31 Aligned_cols=88 Identities=19% Similarity=0.236 Sum_probs=50.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcc-------ccchH------HHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL-------EGDVE------VLRAAF 161 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~-------~~~~~------~~~~~~ 161 (977)
..++|.|..|+|||||++.++...+....++...-.....+.++.+..+..-+... .+.+. ...+..
T Consensus 157 qri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~ 236 (432)
T PRK06793 157 QKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLATS 236 (432)
T ss_pred cEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHHHHHHH
Confidence 48899999999999999999987433334443322233556666555444322110 01111 111122
Q ss_pred HHHHH-HccceEEEEecCcccc
Q 002037 162 LSERL-KRQKRVLIILDDLWGK 182 (977)
Q Consensus 162 l~~~l-~~~~~~LlvlDdv~~~ 182 (977)
+-+++ .+++++|+++||+...
T Consensus 237 iAEyfr~~G~~VLlilDslTr~ 258 (432)
T PRK06793 237 IAEYFRDQGNNVLLMMDSVTRF 258 (432)
T ss_pred HHHHHHHcCCcEEEEecchHHH
Confidence 33333 2589999999998754
No 477
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.37 E-value=0.095 Score=53.16 Aligned_cols=33 Identities=27% Similarity=0.546 Sum_probs=27.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|..|+|||||++.++.......+.+|+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (210)
T cd03269 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59 (210)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 389999999999999999999874455666665
No 478
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.35 E-value=0.074 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.621 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++++|+|.+|+||||+.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999877665
No 479
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.35 E-value=0.1 Score=50.88 Aligned_cols=32 Identities=38% Similarity=0.476 Sum_probs=25.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIF 126 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~w 126 (977)
.+++|+|..|+|||||++.+........+.++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 57 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDE 57 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEE
Confidence 39999999999999999999987333344443
No 480
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.34 E-value=0.23 Score=55.19 Aligned_cols=87 Identities=20% Similarity=0.305 Sum_probs=49.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCC-CCHHHHHHHHHHHhh--h-----ccccchH------HHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQT-PDVKRVQDEIARFLN--T-----ELEGDVE------VLRAA 160 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~--~-----~~~~~~~------~~~~~ 160 (977)
..++|.|..|+|||||++.+.+... .+..++..+.+. ..+.++..+....-. . ...+... ...+.
T Consensus 156 qrigI~G~sG~GKSTLL~~I~~~~~-~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a~~~a~ 234 (433)
T PRK07594 156 QRVGIFSAPGVGKSTLLAMLCNAPD-ADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVAT 234 (433)
T ss_pred CEEEEECCCCCCccHHHHHhcCCCC-CCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHHHHHHH
Confidence 4899999999999999999887632 344555555443 344455454332100 0 0000111 11122
Q ss_pred HHHHHHH-ccceEEEEecCcccc
Q 002037 161 FLSERLK-RQKRVLIILDDLWGK 182 (977)
Q Consensus 161 ~l~~~l~-~~~~~LlvlDdv~~~ 182 (977)
.+-+++. +++++|+++||+...
T Consensus 235 tiAEyfrd~G~~VLl~~Dsltr~ 257 (433)
T PRK07594 235 TIAEFFRDNGKRVVLLADSLTRY 257 (433)
T ss_pred HHHHHHHHCCCcEEEEEeCHHHH
Confidence 2334443 589999999998654
No 481
>PRK13948 shikimate kinase; Provisional
Probab=93.30 E-value=0.072 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+.|.++|+.|+||||+++.+.+.
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999987
No 482
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=93.29 E-value=0.098 Score=53.35 Aligned_cols=33 Identities=27% Similarity=0.429 Sum_probs=27.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|..|+|||||++.++.......+.+++
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 62 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRF 62 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 389999999999999999999874455666665
No 483
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.29 E-value=0.17 Score=46.56 Aligned_cols=106 Identities=18% Similarity=0.358 Sum_probs=58.4
Q ss_pred CChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccCcc-ccC
Q 002037 457 IPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGT 532 (977)
Q Consensus 457 ~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~ 532 (977)
++...|.++.+|+.+.+.. .+..++. .+..+.+|+.+.+..+ +.. ...+..+.+|+.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 3455677888888888875 4666655 6777778888888775 444 34566676788888865 55555544 455
Q ss_pred CCCCCEEEcCCCCCCCccChhhhhcCccccEEEccC
Q 002037 533 VSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGN 568 (977)
Q Consensus 533 l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~ 568 (977)
+.+|+.+++..+ ...++...+... +|+.+.+..
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 778888887654 345555556666 777776654
No 484
>PHA02244 ATPase-like protein
Probab=93.26 E-value=0.21 Score=53.78 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=26.7
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
....+..++..+. -|.|+|+.|+|||++|++++..
T Consensus 108 ~~~ri~r~l~~~~----PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 108 ETADIAKIVNANI----PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred HHHHHHHHHhcCC----CEEEECCCCCCHHHHHHHHHHH
Confidence 3445555555543 5778999999999999999987
No 485
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.26 E-value=0.11 Score=51.15 Aligned_cols=33 Identities=30% Similarity=0.552 Sum_probs=26.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|..|.|||||++.++.......+.+.+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 399999999999999999999774444555554
No 486
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.26 E-value=0.28 Score=54.85 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=50.8
Q ss_pred eEEEEEcCCCChHHHHH-HHHHhhc--------CCCCEEEEEEeCCCCC-HHHHHHHHHHHhh-hc-------cccchHH
Q 002037 95 NIIGVYGSGGIGKTTLM-KQVMKQE--------IPFDKVIFVRVTQTPD-VKRVQDEIARFLN-TE-------LEGDVEV 156 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa-~~v~~~~--------~~f~~~~wv~~~~~~~-~~~~~~~i~~~l~-~~-------~~~~~~~ 156 (977)
+.++|.|-.|+|||+|| -.+.++. +.-+.++++-+.+... +.++ .+.++.-+ .. ..++...
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei-~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARI-HRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHH-HHHHHhcCCccceEEEEECCCCCHH
Confidence 37899999999999997 5667763 2446788888887654 3332 22222222 10 0011111
Q ss_pred ------HHHHHHHHHH-HccceEEEEecCcccc
Q 002037 157 ------LRAAFLSERL-KRQKRVLIILDDLWGK 182 (977)
Q Consensus 157 ------~~~~~l~~~l-~~~~~~LlvlDdv~~~ 182 (977)
..+..+-+++ .+++.+|+|+||+...
T Consensus 269 ~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 0112233333 2589999999998643
No 487
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.25 E-value=0.07 Score=48.34 Aligned_cols=21 Identities=38% Similarity=0.708 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~ 117 (977)
|.|+|..|+|||||.+.+.+.
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999876
No 488
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=93.23 E-value=0.1 Score=51.93 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=26.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|..|.|||||++.+........+.+++
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 51 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI 51 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence 389999999999999999998874444555555
No 489
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.22 E-value=0.21 Score=52.24 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=25.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
+..+|.|.|..|+|||||+..+.+. ....
T Consensus 103 ~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~ 132 (290)
T PRK10463 103 KQLVLNLVSSPGSGKTTLLTETLMRLKDSV 132 (290)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccCC
Confidence 3889999999999999999999988 4443
No 490
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.21 E-value=0.07 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..|+|+|+.|+||||+|+.+.+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999999987
No 491
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.20 E-value=0.067 Score=54.05 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|+.|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 358999999999999999999887
No 492
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=93.20 E-value=0.15 Score=49.33 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 74 KSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 74 ~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
+|....+.++++.+..-.....-|.|+|..|+||+.+|+.+.+. ...-..-+-|+++.
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~ 60 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAA 60 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTT
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhh
Confidence 45555666666655432211246779999999999999999987 22223334455553
No 493
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.20 E-value=0.068 Score=51.10 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~ 117 (977)
|.|+|++|+||||+|+.++..
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999877
No 494
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=93.20 E-value=0.5 Score=48.45 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=30.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
-.++.|.|..|+|||++|.+++.. ...=..++|++....
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~ 55 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER 55 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 459999999999999999998876 333356788877664
No 495
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=93.19 E-value=0.1 Score=53.32 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=27.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.......+.+++
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~ 63 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRV 63 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEE
Confidence 399999999999999999999874445566655
No 496
>PRK13946 shikimate kinase; Provisional
Probab=93.18 E-value=0.073 Score=52.61 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+.|.++|+.|+||||+|+.+++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999988
No 497
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.17 E-value=0.08 Score=52.60 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.|.|.+|+||||+|+.++..
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999887
No 498
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.16 E-value=0.058 Score=52.17 Aligned_cols=21 Identities=24% Similarity=0.465 Sum_probs=19.3
Q ss_pred EEEEcCCCChHHHHHHHHHhh
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~ 117 (977)
|+|+|+.|+||||+|+.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999887
No 499
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.16 E-value=0.08 Score=46.18 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.6
Q ss_pred eEEEEEcCCCChHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVM 115 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~ 115 (977)
..++|.|+.|+|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 589999999999999999986
No 500
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=93.15 E-value=0.15 Score=52.72 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=16.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..|+|++|.||||++..+...
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~ 40 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQ 40 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 7899999999999877766655
Done!