Query 002037
Match_columns 977
No_of_seqs 570 out of 4673
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 09:41:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.5E-45 5.1E-50 430.9 20.0 306 74-400 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.8E-38 9.7E-43 369.5 20.0 280 73-393 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-36 4E-41 396.7 24.6 309 70-400 123-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 1.7E-33 5.8E-38 335.0 27.1 304 70-397 123-449 (591)
5 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-30 3.8E-35 312.7 31.6 500 408-954 20-555 (606)
6 3t6q_A CD180 antigen; protein- 100.0 1.9E-30 6.6E-35 310.6 32.3 481 410-952 23-555 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 1.1E-29 3.8E-34 304.1 33.8 492 422-958 13-535 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 4.7E-28 1.6E-32 294.0 37.9 528 411-957 16-597 (680)
9 3rgz_A Protein brassinosteroid 100.0 2E-29 7E-34 308.4 25.5 405 419-871 125-549 (768)
10 3rgz_A Protein brassinosteroid 100.0 2.2E-29 7.5E-34 308.2 23.3 481 420-939 178-723 (768)
11 2z63_A TOLL-like receptor 4, v 100.0 4.6E-28 1.6E-32 288.0 33.1 160 411-571 19-189 (570)
12 3t6q_A CD180 antigen; protein- 100.0 2.9E-28 9.8E-33 291.8 31.3 493 423-954 15-533 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 4.8E-28 1.7E-32 287.8 31.5 465 424-955 11-529 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-28 1.7E-32 286.0 27.7 463 412-952 18-505 (549)
15 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-27 1.6E-31 290.7 32.4 482 409-938 14-521 (844)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.4E-27 4.8E-32 282.2 26.1 445 419-932 49-509 (549)
17 1ziw_A TOLL-like receptor 3; i 100.0 7.6E-27 2.6E-31 283.3 31.3 494 423-959 7-551 (680)
18 2z7x_B TOLL-like receptor 1, v 99.9 3.8E-26 1.3E-30 267.8 28.8 457 423-952 3-476 (520)
19 3j0a_A TOLL-like receptor 5; m 99.9 1.9E-25 6.4E-30 276.3 33.7 458 419-951 47-554 (844)
20 4ecn_A Leucine-rich repeat pro 99.9 3.2E-26 1.1E-30 277.2 21.8 150 461-625 443-627 (876)
21 4eco_A Uncharacterized protein 99.9 2.9E-26 1E-30 273.8 19.8 347 461-904 201-598 (636)
22 1o6v_A Internalin A; bacterial 99.9 5.3E-25 1.8E-29 253.6 25.9 171 417-607 43-213 (466)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5.8E-24 2E-28 251.3 30.7 455 422-953 33-506 (562)
24 2z7x_B TOLL-like receptor 1, v 99.9 7.5E-25 2.6E-29 256.8 22.8 439 412-931 13-479 (520)
25 4g8a_A TOLL-like receptor 4; l 99.9 4.9E-24 1.7E-28 257.0 30.0 476 411-951 43-574 (635)
26 1o6v_A Internalin A; bacterial 99.9 4.2E-24 1.4E-28 246.1 25.8 343 440-904 44-386 (466)
27 4ecn_A Leucine-rich repeat pro 99.9 1.1E-24 3.8E-29 263.8 21.8 123 499-626 435-582 (876)
28 4eco_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 255.8 22.4 118 499-627 193-340 (636)
29 3v47_A TOLL-like receptor 5B a 99.9 7.5E-24 2.6E-28 243.9 24.1 383 424-932 14-407 (455)
30 4fmz_A Internalin; leucine ric 99.9 2.6E-23 9E-28 230.0 23.2 302 419-845 43-344 (347)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 5E-23 1.7E-27 243.3 26.9 444 408-931 40-508 (562)
32 3bz5_A Internalin-J, INLJ; leu 99.9 1.7E-22 5.9E-27 230.4 25.3 140 419-569 41-180 (457)
33 4fmz_A Internalin; leucine ric 99.9 2.1E-22 7.2E-27 222.7 23.9 280 418-801 64-344 (347)
34 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-22 3.8E-27 232.0 22.2 311 439-870 39-349 (457)
35 4g8a_A TOLL-like receptor 4; l 99.9 1.8E-21 6.1E-26 234.6 33.1 475 431-961 42-559 (635)
36 3o6n_A APL1; leucine-rich repe 99.9 2.7E-21 9.3E-26 217.3 26.9 284 439-801 42-329 (390)
37 3v47_A TOLL-like receptor 5B a 99.9 6.4E-21 2.2E-25 219.4 28.7 158 411-570 22-191 (455)
38 1jl5_A Outer protein YOPM; leu 99.9 2.1E-21 7E-26 221.3 19.7 344 420-871 11-368 (454)
39 3oja_B Anopheles plasmodium-re 99.9 8.5E-21 2.9E-25 225.3 25.8 305 439-845 48-356 (597)
40 3o6n_A APL1; leucine-rich repe 99.9 5.3E-21 1.8E-25 214.9 22.8 301 419-801 44-350 (390)
41 2id5_A Lingo-1, leucine rich r 99.9 9E-21 3.1E-25 219.4 25.0 313 424-801 15-331 (477)
42 1jl5_A Outer protein YOPM; leu 99.9 5E-21 1.7E-25 218.1 21.3 350 439-908 8-371 (454)
43 3oja_B Anopheles plasmodium-re 99.9 1.3E-20 4.6E-25 223.6 23.3 303 418-802 49-357 (597)
44 2id5_A Lingo-1, leucine rich r 99.9 3.2E-20 1.1E-24 214.7 25.5 303 409-774 21-330 (477)
45 3ogk_B Coronatine-insensitive 99.8 1.1E-21 3.9E-26 233.9 4.2 127 440-568 110-252 (592)
46 3ogk_B Coronatine-insensitive 99.8 1.4E-20 4.8E-25 224.5 9.0 153 461-625 107-278 (592)
47 1xku_A Decorin; proteoglycan, 99.8 1.9E-18 6.6E-23 189.2 24.7 291 443-800 32-329 (330)
48 1xku_A Decorin; proteoglycan, 99.8 1.6E-18 5.5E-23 189.8 23.2 293 420-774 31-329 (330)
49 2ft3_A Biglycan; proteoglycan, 99.8 4.1E-19 1.4E-23 194.7 18.2 291 443-801 34-331 (332)
50 2ft3_A Biglycan; proteoglycan, 99.8 8.2E-19 2.8E-23 192.3 20.4 293 420-775 33-331 (332)
51 2p1m_B Transport inhibitor res 99.8 4.9E-21 1.7E-25 228.6 0.2 382 440-905 103-518 (594)
52 1ogq_A PGIP-2, polygalacturona 99.8 2.4E-19 8.2E-24 194.3 12.3 247 442-750 50-304 (313)
53 1ogq_A PGIP-2, polygalacturona 99.8 4.8E-19 1.6E-23 191.9 10.7 243 420-718 50-302 (313)
54 4fcg_A Uncharacterized protein 99.8 4.5E-18 1.5E-22 185.3 17.9 89 465-553 80-169 (328)
55 3zyj_A Leucine-rich repeat-con 99.8 6.2E-18 2.1E-22 192.9 19.7 240 423-717 46-289 (440)
56 3zyi_A Leucine-rich repeat-con 99.8 5.8E-18 2E-22 193.9 19.4 190 423-625 57-250 (452)
57 2z66_A Variable lymphocyte rec 99.8 2.1E-18 7.1E-23 186.8 14.6 190 424-624 11-206 (306)
58 2z80_A TOLL-like receptor 2, v 99.8 4.2E-18 1.4E-22 188.4 16.4 193 425-628 36-233 (353)
59 4fcg_A Uncharacterized protein 99.8 1.1E-17 3.8E-22 182.2 17.6 148 420-570 81-240 (328)
60 2z80_A TOLL-like receptor 2, v 99.7 4.7E-17 1.6E-21 179.9 18.7 177 439-628 28-209 (353)
61 2p1m_B Transport inhibitor res 99.7 3.9E-19 1.3E-23 212.1 1.6 374 419-872 104-518 (594)
62 1z7x_W Ribonuclease inhibitor; 99.7 9.3E-20 3.2E-24 210.1 -5.0 368 442-871 3-409 (461)
63 1ozn_A Reticulon 4 receptor; N 99.7 8E-17 2.7E-21 172.2 18.0 208 411-629 23-237 (285)
64 3zyj_A Leucine-rich repeat-con 99.7 1.4E-16 4.9E-21 181.6 21.2 235 408-696 52-293 (440)
65 3zyi_A Leucine-rich repeat-con 99.7 1.4E-16 4.7E-21 182.5 21.1 205 410-627 65-276 (452)
66 1ozn_A Reticulon 4 receptor; N 99.7 1.5E-16 5.2E-21 170.1 18.9 191 423-625 14-209 (285)
67 2z66_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 175.3 15.4 203 411-624 19-230 (306)
68 3g06_A SSPH2 (leucine-rich rep 99.7 1E-15 3.5E-20 179.6 24.8 255 421-775 41-295 (622)
69 2o6q_A Variable lymphocyte rec 99.7 6.3E-16 2.2E-20 163.6 20.6 197 421-629 17-217 (270)
70 3g06_A SSPH2 (leucine-rich rep 99.7 6.5E-16 2.2E-20 181.2 22.7 258 443-804 41-298 (622)
71 3o53_A Protein LRIM1, AGAP0063 99.7 1.4E-17 4.8E-22 180.9 7.5 116 446-569 14-130 (317)
72 2z62_A TOLL-like receptor 4, v 99.7 8.9E-16 3.1E-20 163.2 17.6 206 413-630 21-237 (276)
73 1h6u_A Internalin H; cell adhe 99.7 1.3E-15 4.4E-20 164.3 18.4 190 418-628 39-228 (308)
74 1h6u_A Internalin H; cell adhe 99.7 4.9E-16 1.7E-20 167.6 14.2 156 430-604 29-184 (308)
75 3rfs_A Internalin B, repeat mo 99.7 2.7E-16 9.3E-21 166.6 11.9 149 418-569 39-191 (272)
76 2z62_A TOLL-like receptor 4, v 99.7 2E-15 7E-20 160.4 18.6 176 426-610 13-194 (276)
77 3o53_A Protein LRIM1, AGAP0063 99.7 4.9E-17 1.7E-21 176.6 6.0 169 439-626 31-200 (317)
78 1p9a_G Platelet glycoprotein I 99.7 2.1E-15 7.3E-20 160.9 18.5 198 419-630 9-208 (290)
79 1z7x_W Ribonuclease inhibitor; 99.6 5.3E-18 1.8E-22 195.4 -2.7 104 466-570 3-124 (461)
80 2o6q_A Variable lymphocyte rec 99.6 5.4E-15 1.9E-19 156.4 20.7 185 411-606 28-218 (270)
81 3oja_A Leucine-rich immune mol 99.6 1.2E-15 4.3E-20 175.3 12.3 151 440-607 32-183 (487)
82 3oja_A Leucine-rich immune mol 99.6 4.8E-16 1.7E-20 178.8 7.8 173 419-610 33-208 (487)
83 2qen_A Walker-type ATPase; unk 99.6 4.1E-14 1.4E-18 156.2 22.7 287 71-394 12-349 (350)
84 3rfs_A Internalin B, repeat mo 99.6 2E-14 6.7E-19 152.2 18.5 179 438-630 37-218 (272)
85 3m19_A Variable lymphocyte rec 99.6 2.5E-14 8.4E-19 149.5 18.9 173 421-605 15-191 (251)
86 1p9a_G Platelet glycoprotein I 99.6 1.1E-14 3.8E-19 155.3 16.5 175 439-627 7-182 (290)
87 2xwt_C Thyrotropin receptor; s 99.6 5.6E-15 1.9E-19 153.2 13.4 136 431-569 22-166 (239)
88 1h6t_A Internalin B; cell adhe 99.6 9.6E-15 3.3E-19 156.0 15.0 172 418-608 44-215 (291)
89 1wwl_A Monocyte differentiatio 99.6 1.4E-15 4.9E-20 164.6 8.5 195 420-624 43-260 (312)
90 2xwt_C Thyrotropin receptor; s 99.6 8E-15 2.7E-19 152.1 13.0 199 411-625 23-234 (239)
91 2fna_A Conserved hypothetical 99.6 1.3E-13 4.6E-18 152.6 22.5 284 71-393 13-356 (357)
92 3m19_A Variable lymphocyte rec 99.6 6.4E-14 2.2E-18 146.3 18.3 162 408-570 23-190 (251)
93 1h6t_A Internalin B; cell adhe 99.6 1.2E-14 4.1E-19 155.2 12.8 186 422-628 26-211 (291)
94 1m9s_A Internalin B; cell inva 99.6 2.5E-14 8.6E-19 167.6 16.4 175 418-611 41-215 (605)
95 1w5s_A Origin recognition comp 99.6 4.2E-14 1.4E-18 160.0 17.3 303 71-389 22-387 (412)
96 1wwl_A Monocyte differentiatio 99.5 2.4E-14 8.2E-19 154.9 13.0 194 419-628 94-307 (312)
97 3e6j_A Variable lymphocyte rec 99.5 1.5E-13 5E-18 141.1 16.0 147 422-570 21-170 (229)
98 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.7E-18 140.1 14.4 145 423-569 10-158 (208)
99 1xeu_A Internalin C; cellular 99.5 4.4E-14 1.5E-18 148.3 10.7 170 419-608 18-187 (263)
100 4ezg_A Putative uncharacterize 99.5 9.7E-14 3.3E-18 138.9 11.9 147 417-569 41-191 (197)
101 4ay9_X Follicle-stimulating ho 99.5 2.6E-13 8.8E-18 149.4 15.8 120 445-568 12-137 (350)
102 1m9s_A Internalin B; cell inva 99.5 4.9E-14 1.7E-18 165.1 10.3 189 419-628 20-208 (605)
103 2v9t_B SLIT homolog 2 protein 99.5 3E-13 1E-17 137.8 14.3 145 423-569 14-162 (220)
104 2ast_B S-phase kinase-associat 99.5 5.2E-14 1.8E-18 154.4 9.3 147 444-603 49-205 (336)
105 4glp_A Monocyte differentiatio 99.5 1.3E-13 4.4E-18 149.1 12.1 193 420-628 91-305 (310)
106 2v70_A SLIT-2, SLIT homolog 2 99.5 3.6E-13 1.2E-17 137.1 14.6 145 423-569 14-163 (220)
107 4ezg_A Putative uncharacterize 99.5 2.8E-13 9.6E-18 135.5 12.7 148 440-604 42-192 (197)
108 2ast_B S-phase kinase-associat 99.5 2.1E-14 7.1E-19 157.6 4.4 174 420-603 70-257 (336)
109 1xeu_A Internalin C; cellular 99.4 5E-13 1.7E-17 140.2 13.6 145 418-570 39-183 (263)
110 4glp_A Monocyte differentiatio 99.4 2.3E-13 7.8E-18 147.1 10.1 136 465-608 90-239 (310)
111 4ay9_X Follicle-stimulating ho 99.4 7.5E-13 2.6E-17 145.6 14.3 141 428-569 17-164 (350)
112 2xot_A Amphoterin-induced prot 99.4 9.8E-13 3.4E-17 145.3 14.2 145 423-569 21-173 (361)
113 2o6s_A Variable lymphocyte rec 99.4 6.3E-12 2.2E-16 127.0 16.6 151 411-569 19-175 (208)
114 3cvr_A Invasion plasmid antige 99.4 5E-12 1.7E-16 146.3 17.4 181 421-628 60-241 (571)
115 3e6j_A Variable lymphocyte rec 99.4 5.9E-12 2E-16 129.1 16.1 140 411-550 31-175 (229)
116 2v9t_B SLIT homolog 2 protein 99.4 3.7E-12 1.3E-16 129.6 14.1 138 410-547 22-165 (220)
117 2ca6_A RAN GTPase-activating p 99.4 6.7E-14 2.3E-18 156.6 1.2 129 441-569 31-197 (386)
118 2xot_A Amphoterin-induced prot 99.4 2.2E-12 7.5E-17 142.5 12.9 148 420-568 39-198 (361)
119 2v70_A SLIT-2, SLIT homolog 2 99.4 3.7E-12 1.3E-16 129.7 12.8 139 411-549 23-168 (220)
120 3goz_A Leucine-rich repeat-con 99.3 3.4E-13 1.2E-17 149.2 3.8 126 443-569 23-177 (362)
121 3cvr_A Invasion plasmid antige 99.3 2.3E-11 7.8E-16 140.7 18.3 166 412-607 72-244 (571)
122 2qby_B CDC6 homolog 3, cell di 99.3 4.3E-11 1.5E-15 133.7 19.9 279 72-376 21-338 (384)
123 2ca6_A RAN GTPase-activating p 99.3 5.3E-13 1.8E-17 149.3 4.2 181 419-606 31-257 (386)
124 2ell_A Acidic leucine-rich nuc 99.3 4.1E-12 1.4E-16 123.5 9.7 125 442-569 24-157 (168)
125 3goz_A Leucine-rich repeat-con 99.3 1.8E-12 6E-17 143.5 7.8 203 419-627 21-263 (362)
126 2v1u_A Cell division control p 99.3 3.9E-11 1.3E-15 134.3 18.7 289 71-376 19-350 (387)
127 1a9n_A U2A', U2A'; complex (nu 99.3 2E-12 6.7E-17 126.7 7.1 131 436-569 13-150 (176)
128 2ell_A Acidic leucine-rich nuc 99.3 3.1E-12 1.1E-16 124.3 8.3 131 419-552 23-164 (168)
129 2je0_A Acidic leucine-rich nuc 99.3 3.3E-12 1.1E-16 121.4 7.6 123 442-567 17-148 (149)
130 1w8a_A SLIT protein; signaling 99.3 2E-11 6.9E-16 121.2 11.8 123 423-546 11-138 (192)
131 2qby_A CDC6 homolog 1, cell di 99.3 4.8E-11 1.6E-15 133.5 16.0 288 71-376 20-347 (386)
132 1fnn_A CDC6P, cell division co 99.3 4.6E-10 1.6E-14 125.6 23.8 285 72-376 18-350 (389)
133 1w8a_A SLIT protein; signaling 99.2 3.8E-11 1.3E-15 119.2 13.2 122 445-570 11-137 (192)
134 2wfh_A SLIT homolog 2 protein 99.2 3.3E-11 1.1E-15 119.7 12.5 120 446-569 14-136 (193)
135 2je0_A Acidic leucine-rich nuc 99.2 9.7E-12 3.3E-16 118.0 7.9 123 419-543 16-149 (149)
136 1a9n_A U2A', U2A'; complex (nu 99.2 7.5E-12 2.6E-16 122.6 6.8 126 419-546 18-152 (176)
137 2wfh_A SLIT homolog 2 protein 99.2 9.4E-11 3.2E-15 116.3 14.4 123 423-547 13-139 (193)
138 2o6r_A Variable lymphocyte rec 99.2 7.9E-11 2.7E-15 115.4 13.6 126 423-549 10-139 (177)
139 4b8c_D Glucose-repressible alc 99.2 6.2E-12 2.1E-16 151.4 6.2 114 439-553 221-335 (727)
140 1njg_A DNA polymerase III subu 99.2 2E-10 6.9E-15 119.4 15.3 199 67-272 19-231 (250)
141 4b8c_D Glucose-repressible alc 99.2 2.9E-11 9.9E-16 145.5 9.1 151 419-572 172-329 (727)
142 1dce_A Protein (RAB geranylger 99.1 1.1E-10 3.9E-15 135.8 12.4 99 468-569 443-543 (567)
143 2o6r_A Variable lymphocyte rec 99.1 3.1E-10 1.1E-14 111.1 13.3 123 444-570 9-135 (177)
144 2chg_A Replication factor C sm 99.1 6.6E-10 2.2E-14 113.6 15.2 186 67-270 13-205 (226)
145 1dce_A Protein (RAB geranylger 99.1 5.2E-10 1.8E-14 130.2 13.0 192 419-623 348-566 (567)
146 1ds9_A Outer arm dynein; leuci 99.0 3.7E-12 1.3E-16 127.4 -6.0 104 440-545 46-151 (198)
147 1ds9_A Outer arm dynein; leuci 99.0 4.3E-12 1.5E-16 127.0 -7.3 153 443-599 24-180 (198)
148 2r9u_A Variable lymphocyte rec 99.0 2.5E-09 8.7E-14 103.9 11.4 98 445-545 15-116 (174)
149 3g39_A Variable lymphocyte rec 98.9 3.1E-09 1.1E-13 102.9 11.3 98 445-545 12-113 (170)
150 3sb4_A Hypothetical leucine ri 98.9 1.6E-09 5.3E-14 117.9 9.4 169 441-623 100-327 (329)
151 2r9u_A Variable lymphocyte rec 98.9 7.1E-09 2.4E-13 100.7 11.9 107 423-530 15-124 (174)
152 1sxj_B Activator 1 37 kDa subu 98.9 5.8E-09 2E-13 113.2 12.4 187 67-270 17-211 (323)
153 3g39_A Variable lymphocyte rec 98.9 9.2E-09 3.1E-13 99.5 11.9 105 422-527 11-118 (170)
154 1hqc_A RUVB; extended AAA-ATPa 98.8 9.1E-09 3.1E-13 111.7 11.1 178 69-272 10-214 (324)
155 1iqp_A RFCS; clamp loader, ext 98.8 2.5E-08 8.6E-13 108.4 12.0 187 68-272 22-215 (327)
156 3sb4_A Hypothetical leucine ri 98.8 1.8E-08 6E-13 109.5 10.4 155 456-624 83-304 (329)
157 4fdw_A Leucine rich hypothetic 98.6 8.6E-07 2.9E-11 98.3 19.0 184 421-624 114-307 (401)
158 4fdw_A Leucine rich hypothetic 98.6 7.3E-07 2.5E-11 98.9 18.3 167 441-627 112-281 (401)
159 2chq_A Replication factor C sm 98.6 2.2E-07 7.4E-12 100.5 13.7 186 67-270 13-205 (319)
160 1jr3_A DNA polymerase III subu 98.6 3.5E-07 1.2E-11 101.3 13.7 195 69-270 14-222 (373)
161 3te6_A Regulatory protein SIR3 98.5 8.8E-07 3E-11 93.3 15.4 165 73-239 22-212 (318)
162 2ifg_A High affinity nerve gro 98.5 1.3E-07 4.4E-12 103.6 9.5 99 447-547 13-116 (347)
163 2ifg_A High affinity nerve gro 98.5 2.2E-07 7.6E-12 101.7 9.9 98 470-570 12-114 (347)
164 3un9_A NLR family member X1; l 98.5 1.2E-08 4.2E-13 112.1 -0.9 151 419-570 71-250 (372)
165 1jbk_A CLPB protein; beta barr 98.5 2.9E-07 9.8E-12 91.2 9.1 150 69-234 20-194 (195)
166 1d2n_A N-ethylmaleimide-sensit 98.4 9.8E-06 3.4E-10 84.9 20.4 176 93-291 63-265 (272)
167 3bos_A Putative DNA replicatio 98.4 1.4E-07 4.7E-12 97.4 5.8 165 77-269 37-217 (242)
168 3h4m_A Proteasome-activating n 98.4 1.6E-06 5.3E-11 91.9 13.0 183 65-267 11-229 (285)
169 3un9_A NLR family member X1; l 98.3 6.2E-08 2.1E-12 106.5 0.3 160 441-607 71-253 (372)
170 3pvs_A Replication-associated 98.3 5.7E-06 2E-10 92.5 16.2 179 67-269 22-215 (447)
171 2qz4_A Paraplegin; AAA+, SPG7, 98.3 7E-06 2.4E-10 85.6 15.9 181 70-268 5-221 (262)
172 1sxj_D Activator 1 41 kDa subu 98.3 1.5E-06 5.1E-11 95.4 10.9 194 68-269 34-235 (353)
173 3d8b_A Fidgetin-like protein 1 98.3 1E-05 3.6E-10 88.2 16.8 185 67-270 80-296 (357)
174 3eie_A Vacuolar protein sortin 98.2 2.5E-05 8.6E-10 83.9 18.1 184 65-269 12-228 (322)
175 4fs7_A Uncharacterized protein 98.2 3.9E-05 1.3E-09 85.3 20.2 124 438-568 67-194 (394)
176 1sxj_A Activator 1 95 kDa subu 98.2 3.8E-06 1.3E-10 96.6 12.2 195 67-270 35-254 (516)
177 4fs7_A Uncharacterized protein 98.2 3.1E-05 1.1E-09 86.1 18.2 187 419-624 70-260 (394)
178 2z4s_A Chromosomal replication 98.2 6.3E-06 2.2E-10 92.4 12.3 171 79-266 116-303 (440)
179 3uk6_A RUVB-like 2; hexameric 98.2 6E-05 2.1E-09 82.9 19.8 193 70-268 43-302 (368)
180 3pfi_A Holliday junction ATP-d 98.2 2.2E-05 7.6E-10 85.3 15.9 174 68-269 26-227 (338)
181 1xwi_A SKD1 protein; VPS4B, AA 98.2 6.2E-05 2.1E-09 80.6 19.0 185 66-269 7-223 (322)
182 1sxj_E Activator 1 40 kDa subu 98.2 4.6E-06 1.6E-10 91.4 10.3 194 67-269 10-237 (354)
183 1a5t_A Delta prime, HOLB; zinc 98.1 3.1E-05 1.1E-09 83.6 16.3 167 76-267 7-203 (334)
184 1sxj_C Activator 1 40 kDa subu 98.1 1.8E-05 6.2E-10 85.9 14.2 180 67-264 21-207 (340)
185 3vfd_A Spastin; ATPase, microt 98.1 5.4E-05 1.9E-09 83.7 17.8 183 66-269 110-326 (389)
186 1l8q_A Chromosomal replication 98.1 1.6E-05 5.5E-10 85.7 12.8 168 77-263 20-202 (324)
187 3b9p_A CG5977-PA, isoform A; A 98.1 0.00012 4.1E-09 77.7 19.4 183 66-269 16-233 (297)
188 3u61_B DNA polymerase accessor 98.1 1.6E-05 5.6E-10 85.7 12.4 175 67-265 22-212 (324)
189 3e4g_A ATP synthase subunit S, 98.1 1.4E-06 4.7E-11 82.7 3.4 90 834-935 61-154 (176)
190 3syl_A Protein CBBX; photosynt 98.1 9.3E-06 3.2E-10 87.0 10.3 147 73-239 33-218 (309)
191 2p65_A Hypothetical protein PF 98.0 1.6E-05 5.6E-10 77.8 10.7 47 69-117 20-66 (187)
192 2ra8_A Uncharacterized protein 98.0 4.1E-06 1.4E-10 91.0 6.7 137 460-604 166-318 (362)
193 3e4g_A ATP synthase subunit S, 98.0 1.7E-06 5.7E-11 82.2 3.1 70 832-909 83-155 (176)
194 2qp9_X Vacuolar protein sortin 98.0 6.5E-05 2.2E-09 81.7 16.0 182 67-269 47-261 (355)
195 2zan_A Vacuolar protein sortin 98.0 0.00013 4.4E-09 81.9 17.9 185 66-269 129-345 (444)
196 4b4t_J 26S protease regulatory 97.9 0.00028 9.5E-09 76.2 17.7 175 68-262 145-354 (405)
197 3cf0_A Transitional endoplasmi 97.9 0.00014 4.8E-09 77.2 14.4 179 66-264 10-223 (301)
198 3pxg_A Negative regulator of g 97.8 6.4E-05 2.2E-09 85.0 11.8 147 69-239 178-339 (468)
199 2gno_A DNA polymerase III, gam 97.8 5.8E-05 2E-09 79.7 10.3 142 76-238 2-152 (305)
200 2w58_A DNAI, primosome compone 97.8 4.8E-05 1.7E-09 75.6 9.2 55 75-129 33-90 (202)
201 3n70_A Transport activator; si 97.8 7.4E-06 2.5E-10 76.5 2.7 46 72-117 2-47 (145)
202 1qvr_A CLPB protein; coiled co 97.8 3.6E-05 1.2E-09 94.3 9.5 174 69-258 168-368 (854)
203 4gt6_A Cell surface protein; l 97.7 0.0017 5.9E-08 71.9 21.5 300 439-800 60-367 (394)
204 4b4t_H 26S protease regulatory 97.7 0.00065 2.2E-08 74.3 17.2 174 69-262 207-415 (467)
205 4b4t_L 26S protease subunit RP 97.7 0.00049 1.7E-08 75.6 15.5 173 70-262 180-387 (437)
206 1io0_A Tropomodulin; LRR prote 97.7 1.5E-05 5.1E-10 77.9 3.0 108 462-569 32-161 (185)
207 2ra8_A Uncharacterized protein 97.7 2.3E-05 7.8E-10 85.1 4.5 60 509-569 250-317 (362)
208 3ec2_A DNA replication protein 97.7 7.8E-05 2.7E-09 72.4 7.9 118 75-208 18-143 (180)
209 4b4t_I 26S protease regulatory 97.6 0.00081 2.8E-08 72.8 15.9 176 67-262 178-388 (437)
210 4b4t_K 26S protease regulatory 97.6 0.001 3.5E-08 73.0 17.0 174 69-262 170-379 (428)
211 3hu3_A Transitional endoplasmi 97.6 0.0005 1.7E-08 77.5 14.7 180 69-268 202-414 (489)
212 4b4t_M 26S protease regulatory 97.6 0.00037 1.3E-08 76.5 13.1 177 66-262 176-387 (434)
213 1io0_A Tropomodulin; LRR prote 97.6 2.1E-05 7.1E-10 76.8 2.6 108 439-546 33-163 (185)
214 1in4_A RUVB, holliday junction 97.5 0.0018 6.2E-08 69.7 17.2 175 67-268 21-222 (334)
215 2ce7_A Cell division protein F 97.5 0.00073 2.5E-08 75.5 14.0 174 69-262 14-221 (476)
216 3pxi_A Negative regulator of g 97.5 0.00042 1.4E-08 83.8 13.0 147 69-239 178-339 (758)
217 1lv7_A FTSH; alpha/beta domain 97.5 0.0015 5.1E-08 67.4 14.9 176 68-263 9-219 (257)
218 3rw6_A Nuclear RNA export fact 97.4 0.00015 5.1E-09 74.4 6.6 56 509-565 194-257 (267)
219 4fcw_A Chaperone protein CLPB; 97.4 0.00018 6.2E-09 77.0 7.7 60 73-132 19-86 (311)
220 2bjv_A PSP operon transcriptio 97.4 0.00011 3.7E-09 76.5 5.8 62 70-131 5-67 (265)
221 3rw6_A Nuclear RNA export fact 97.4 0.00011 3.9E-09 75.3 4.9 79 463-541 167-258 (267)
222 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0012 4.2E-08 79.9 14.9 154 69-238 184-362 (758)
223 1ofh_A ATP-dependent HSL prote 97.3 0.0015 5.2E-08 69.5 12.4 45 73-117 17-73 (310)
224 2r62_A Cell division protease 97.2 0.00013 4.5E-09 76.1 3.5 127 95-239 45-197 (268)
225 4gt6_A Cell surface protein; l 97.2 0.0099 3.4E-07 65.6 18.9 142 422-568 66-214 (394)
226 2c9o_A RUVB-like 1; hexameric 97.2 0.0017 5.9E-08 73.1 12.6 48 70-117 36-86 (456)
227 2kjq_A DNAA-related protein; s 97.1 0.0002 6.7E-09 66.8 3.3 38 94-131 36-74 (149)
228 3cf2_A TER ATPase, transitiona 97.1 0.0032 1.1E-07 74.6 14.0 149 94-262 238-407 (806)
229 3t15_A Ribulose bisphosphate c 97.1 0.0027 9.4E-08 66.7 12.2 28 94-121 36-64 (293)
230 3pxi_A Negative regulator of g 97.1 0.00037 1.3E-08 84.3 5.7 145 72-237 492-674 (758)
231 3co5_A Putative two-component 97.1 5.3E-05 1.8E-09 70.3 -1.5 47 72-118 5-51 (143)
232 2x8a_A Nuclear valosin-contain 96.9 0.011 3.8E-07 61.2 14.7 153 68-239 7-192 (274)
233 1ojl_A Transcriptional regulat 96.9 0.00053 1.8E-08 72.6 4.4 45 73-117 4-48 (304)
234 1ixz_A ATP-dependent metallopr 96.9 0.0069 2.4E-07 62.2 12.7 146 97-261 52-220 (254)
235 4h09_A Hypothetical leucine ri 96.7 0.046 1.6E-06 59.8 18.4 56 736-797 285-340 (379)
236 1n0w_A DNA repair protein RAD5 96.7 0.0069 2.4E-07 61.7 10.8 87 95-182 25-131 (243)
237 1iy2_A ATP-dependent metallopr 96.7 0.025 8.4E-07 58.9 15.0 147 97-262 76-245 (278)
238 1r6b_X CLPA protein; AAA+, N-t 96.6 0.0039 1.3E-07 75.4 9.1 57 73-131 460-523 (758)
239 2dhr_A FTSH; AAA+ protein, hex 96.5 0.0094 3.2E-07 67.0 11.4 145 96-262 66-236 (499)
240 2z43_A DNA repair and recombin 96.5 0.0094 3.2E-07 63.6 10.6 87 95-182 108-215 (324)
241 1qvr_A CLPB protein; coiled co 96.5 0.0035 1.2E-07 76.6 7.9 60 72-131 559-626 (854)
242 2cvh_A DNA repair and recombin 96.4 0.0053 1.8E-07 61.5 7.7 43 95-139 21-63 (220)
243 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0019 6.3E-08 67.2 4.2 69 95-182 124-194 (331)
244 3m6a_A ATP-dependent protease 96.4 0.008 2.7E-07 69.0 9.9 151 73-238 83-266 (543)
245 1um8_A ATP-dependent CLP prote 96.4 0.017 5.6E-07 63.3 11.9 24 94-117 72-95 (376)
246 1ypw_A Transitional endoplasmi 96.3 0.02 6.9E-07 69.0 13.3 151 70-239 203-386 (806)
247 3hr8_A Protein RECA; alpha and 96.3 0.0089 3E-07 63.9 9.0 84 94-182 61-151 (356)
248 1v5w_A DMC1, meiotic recombina 96.3 0.018 6.1E-07 61.9 11.4 87 94-181 122-230 (343)
249 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0042 1.4E-07 62.9 6.2 37 95-131 24-61 (235)
250 2qgz_A Helicase loader, putati 96.3 0.0053 1.8E-07 64.9 6.8 55 75-129 132-189 (308)
251 1jr3_D DNA polymerase III, del 96.1 0.027 9.4E-07 60.7 11.9 154 94-268 18-184 (343)
252 2ehv_A Hypothetical protein PH 96.1 0.0031 1.1E-07 64.7 4.2 36 95-130 31-68 (251)
253 3io5_A Recombination and repai 96.1 0.013 4.5E-07 60.6 8.3 82 96-182 30-123 (333)
254 2zr9_A Protein RECA, recombina 96.0 0.013 4.5E-07 62.9 8.2 83 95-182 62-151 (349)
255 3lda_A DNA repair protein RAD5 96.0 0.027 9.4E-07 61.4 10.8 87 95-182 179-285 (400)
256 4a74_A DNA repair and recombin 95.9 0.037 1.3E-06 55.6 11.1 42 95-136 26-74 (231)
257 1u94_A RECA protein, recombina 95.9 0.015 5.2E-07 62.4 8.4 83 95-182 64-153 (356)
258 2i1q_A DNA repair and recombin 95.9 0.025 8.4E-07 60.4 9.9 87 94-181 98-215 (322)
259 1xp8_A RECA protein, recombina 95.7 0.018 6.3E-07 62.0 8.1 83 95-182 75-164 (366)
260 3c8u_A Fructokinase; YP_612366 95.6 0.01 3.5E-07 58.8 5.3 40 78-117 6-45 (208)
261 1rz3_A Hypothetical protein rb 95.6 0.014 4.8E-07 57.4 5.9 43 75-117 2-45 (201)
262 3bh0_A DNAB-like replicative h 95.3 0.073 2.5E-06 56.3 11.0 48 95-145 69-118 (315)
263 1pzn_A RAD51, DNA repair and r 95.1 0.072 2.5E-06 57.2 10.1 44 94-137 131-181 (349)
264 3ice_A Transcription terminati 95.1 0.015 5E-07 61.8 4.4 38 95-132 175-215 (422)
265 1sky_E F1-ATPase, F1-ATP synth 95.0 0.052 1.8E-06 59.7 8.6 86 96-181 153-256 (473)
266 1qhx_A CPT, protein (chloramph 94.9 0.013 4.4E-07 56.4 3.4 23 95-117 4-26 (178)
267 1u0j_A DNA replication protein 94.9 0.036 1.2E-06 56.2 6.6 39 79-117 89-127 (267)
268 3kb2_A SPBC2 prophage-derived 94.9 0.014 4.6E-07 55.8 3.3 23 95-117 2-24 (173)
269 1odf_A YGR205W, hypothetical 3 94.8 0.03 1E-06 58.3 6.0 26 92-117 29-54 (290)
270 1g5t_A COB(I)alamin adenosyltr 94.6 0.041 1.4E-06 52.8 5.9 110 95-209 29-164 (196)
271 4h09_A Hypothetical leucine ri 94.6 0.086 2.9E-06 57.6 9.4 123 440-567 215-341 (379)
272 1zp6_A Hypothetical protein AT 94.6 0.018 6.1E-07 56.1 3.4 23 95-117 10-32 (191)
273 2r44_A Uncharacterized protein 94.6 0.024 8.1E-07 60.8 4.7 42 72-117 28-69 (331)
274 2dr3_A UPF0273 protein PH0284; 94.5 0.066 2.3E-06 54.4 7.8 37 95-131 24-61 (247)
275 1vma_A Cell division protein F 94.5 0.22 7.4E-06 52.1 11.7 54 77-130 81-141 (306)
276 3e70_C DPA, signal recognition 94.5 0.31 1.1E-05 51.5 13.1 54 94-147 129-184 (328)
277 3lw7_A Adenylate kinase relate 94.5 0.017 5.7E-07 55.3 3.0 20 95-114 2-21 (179)
278 3vaa_A Shikimate kinase, SK; s 94.5 0.018 6.3E-07 56.4 3.3 24 94-117 25-48 (199)
279 1kgd_A CASK, peripheral plasma 94.4 0.02 6.8E-07 55.1 3.3 23 95-117 6-28 (180)
280 3hws_A ATP-dependent CLP prote 94.4 0.03 1E-06 60.9 5.1 45 73-117 17-74 (363)
281 1kag_A SKI, shikimate kinase I 94.4 0.017 5.9E-07 55.1 2.7 23 95-117 5-27 (173)
282 1fx0_B ATP synthase beta chain 94.4 0.095 3.2E-06 57.7 8.8 87 95-181 166-277 (498)
283 3cmu_A Protein RECA, recombina 94.4 0.058 2E-06 69.8 8.2 83 94-181 1427-1516(2050)
284 1ly1_A Polynucleotide kinase; 94.4 0.023 7.9E-07 54.6 3.6 22 95-116 3-24 (181)
285 3nbx_X ATPase RAVA; AAA+ ATPas 94.3 0.031 1E-06 62.9 5.0 42 72-117 23-64 (500)
286 3trf_A Shikimate kinase, SK; a 94.3 0.021 7.2E-07 55.2 3.3 24 94-117 5-28 (185)
287 2ck3_D ATP synthase subunit be 94.3 0.14 4.9E-06 56.1 10.0 87 95-181 154-264 (482)
288 3dm5_A SRP54, signal recogniti 94.3 0.16 5.3E-06 55.8 10.2 24 94-117 100-123 (443)
289 1zuh_A Shikimate kinase; alpha 94.3 0.023 8E-07 53.9 3.3 25 93-117 6-30 (168)
290 2px0_A Flagellar biosynthesis 94.2 0.084 2.9E-06 55.1 7.7 37 94-130 105-143 (296)
291 3uie_A Adenylyl-sulfate kinase 94.2 0.026 8.9E-07 55.4 3.6 24 94-117 25-48 (200)
292 1g8p_A Magnesium-chelatase 38 94.1 0.026 8.9E-07 61.1 3.8 49 67-117 20-68 (350)
293 2hf9_A Probable hydrogenase ni 94.1 0.051 1.8E-06 54.4 5.6 37 79-117 25-61 (226)
294 1ye8_A Protein THEP1, hypothet 94.0 0.027 9.3E-07 53.9 3.3 22 96-117 2-23 (178)
295 3kl4_A SRP54, signal recogniti 94.0 0.16 5.5E-06 55.7 9.7 37 94-130 97-134 (433)
296 1j8m_F SRP54, signal recogniti 94.0 0.23 7.8E-06 51.8 10.5 37 94-130 98-135 (297)
297 4eun_A Thermoresistant glucoki 94.0 0.027 9.4E-07 55.2 3.3 24 94-117 29-52 (200)
298 1knq_A Gluconate kinase; ALFA/ 94.0 0.03 1E-06 53.5 3.5 24 94-117 8-31 (175)
299 4a1f_A DNAB helicase, replicat 94.0 0.2 7E-06 52.9 10.1 61 79-145 35-96 (338)
300 1nks_A Adenylate kinase; therm 94.0 0.029 1E-06 54.5 3.5 23 95-117 2-24 (194)
301 3t61_A Gluconokinase; PSI-biol 94.0 0.022 7.4E-07 56.0 2.6 24 94-117 18-41 (202)
302 3cf2_A TER ATPase, transitiona 94.0 0.087 3E-06 62.5 8.0 151 71-239 477-662 (806)
303 2q6t_A DNAB replication FORK h 94.0 0.18 6.1E-06 56.3 10.3 48 95-144 201-250 (444)
304 2bdt_A BH3686; alpha-beta prot 93.9 0.031 1E-06 54.3 3.5 23 95-117 3-25 (189)
305 3a00_A Guanylate kinase, GMP k 93.9 0.024 8.1E-07 54.9 2.7 23 95-117 2-24 (186)
306 2ze6_A Isopentenyl transferase 93.9 0.031 1.1E-06 57.1 3.6 23 95-117 2-24 (253)
307 3tqc_A Pantothenate kinase; bi 93.9 0.058 2E-06 56.7 5.7 57 75-131 71-132 (321)
308 2wsm_A Hydrogenase expression/ 93.9 0.046 1.6E-06 54.5 4.9 40 76-117 14-53 (221)
309 3tr0_A Guanylate kinase, GMP k 93.9 0.03 1E-06 55.1 3.4 23 95-117 8-30 (205)
310 1kht_A Adenylate kinase; phosp 93.8 0.03 1E-06 54.4 3.3 23 95-117 4-26 (192)
311 1ex7_A Guanylate kinase; subst 93.8 0.027 9.2E-07 54.1 2.8 28 95-122 2-30 (186)
312 2ga8_A Hypothetical 39.9 kDa p 93.8 0.067 2.3E-06 56.5 5.9 41 77-117 5-47 (359)
313 2yvu_A Probable adenylyl-sulfa 93.8 0.053 1.8E-06 52.4 4.9 24 94-117 13-36 (186)
314 3tau_A Guanylate kinase, GMP k 93.8 0.031 1.1E-06 55.2 3.2 24 94-117 8-31 (208)
315 2rhm_A Putative kinase; P-loop 93.8 0.036 1.2E-06 53.9 3.7 24 94-117 5-28 (193)
316 3iij_A Coilin-interacting nucl 93.8 0.027 9.2E-07 54.2 2.7 24 94-117 11-34 (180)
317 3tlx_A Adenylate kinase 2; str 93.7 0.058 2E-06 54.7 5.3 24 94-117 29-52 (243)
318 1via_A Shikimate kinase; struc 93.7 0.027 9.4E-07 53.8 2.7 23 95-117 5-27 (175)
319 2xxa_A Signal recognition part 93.7 0.36 1.2E-05 53.2 11.9 53 79-131 78-139 (433)
320 1gvn_B Zeta; postsegregational 93.7 0.064 2.2E-06 55.8 5.7 24 94-117 33-56 (287)
321 4gp7_A Metallophosphoesterase; 93.7 0.031 1.1E-06 53.2 3.0 21 95-115 10-30 (171)
322 3k1j_A LON protease, ATP-depen 93.7 0.096 3.3E-06 61.1 7.7 49 65-117 35-83 (604)
323 3fwy_A Light-independent proto 93.7 0.034 1.2E-06 58.6 3.5 38 94-131 48-86 (314)
324 3tif_A Uncharacterized ABC tra 93.6 0.046 1.6E-06 55.0 4.3 33 95-127 32-64 (235)
325 1y63_A LMAJ004144AAA protein; 93.6 0.035 1.2E-06 53.6 3.3 24 94-117 10-33 (184)
326 2onk_A Molybdate/tungstate ABC 93.6 0.053 1.8E-06 54.7 4.7 33 95-127 25-57 (240)
327 2if2_A Dephospho-COA kinase; a 93.6 0.035 1.2E-06 54.6 3.3 22 95-116 2-23 (204)
328 2jaq_A Deoxyguanosine kinase; 93.6 0.036 1.2E-06 54.5 3.3 22 96-117 2-23 (205)
329 2qor_A Guanylate kinase; phosp 93.6 0.03 1E-06 55.1 2.7 24 94-117 12-35 (204)
330 2pcj_A ABC transporter, lipopr 93.5 0.05 1.7E-06 54.3 4.3 32 96-127 32-63 (224)
331 3rfe_A Platelet glycoprotein I 93.5 0.1 3.6E-06 46.7 6.0 35 467-501 32-67 (130)
332 1htw_A HI0065; nucleotide-bind 93.5 0.044 1.5E-06 51.2 3.5 23 95-117 34-56 (158)
333 3asz_A Uridine kinase; cytidin 93.5 0.039 1.3E-06 54.6 3.4 24 94-117 6-29 (211)
334 1lvg_A Guanylate kinase, GMP k 93.5 0.032 1.1E-06 54.6 2.7 23 95-117 5-27 (198)
335 1jjv_A Dephospho-COA kinase; P 93.5 0.04 1.4E-06 54.3 3.4 22 95-116 3-24 (206)
336 3gfo_A Cobalt import ATP-bindi 93.4 0.053 1.8E-06 55.9 4.4 32 96-127 36-67 (275)
337 2plr_A DTMP kinase, probable t 93.4 0.089 3.1E-06 51.9 6.0 23 95-117 5-27 (213)
338 1ukz_A Uridylate kinase; trans 93.4 0.045 1.5E-06 53.8 3.7 24 94-117 15-38 (203)
339 2j41_A Guanylate kinase; GMP, 93.4 0.038 1.3E-06 54.4 3.2 23 95-117 7-29 (207)
340 2iyv_A Shikimate kinase, SK; t 93.4 0.031 1.1E-06 53.9 2.5 23 95-117 3-25 (184)
341 2r6a_A DNAB helicase, replicat 93.4 0.15 5.3E-06 57.0 8.5 47 95-143 204-252 (454)
342 3ney_A 55 kDa erythrocyte memb 93.4 0.042 1.4E-06 53.1 3.3 24 94-117 19-42 (197)
343 1xjc_A MOBB protein homolog; s 93.4 0.068 2.3E-06 50.2 4.6 24 94-117 4-27 (169)
344 3cm0_A Adenylate kinase; ATP-b 93.4 0.045 1.5E-06 52.8 3.6 23 95-117 5-27 (186)
345 1b0u_A Histidine permease; ABC 93.4 0.055 1.9E-06 55.4 4.4 33 95-127 33-65 (262)
346 1uf9_A TT1252 protein; P-loop, 93.4 0.046 1.6E-06 53.6 3.7 24 94-117 8-31 (203)
347 1cke_A CK, MSSA, protein (cyti 93.3 0.041 1.4E-06 55.1 3.4 23 95-117 6-28 (227)
348 2b8t_A Thymidine kinase; deoxy 93.3 0.022 7.5E-07 56.5 1.3 109 95-209 13-127 (223)
349 1tev_A UMP-CMP kinase; ploop, 93.3 0.045 1.6E-06 53.3 3.6 24 94-117 3-26 (196)
350 1e6c_A Shikimate kinase; phosp 93.3 0.037 1.3E-06 52.7 2.8 23 95-117 3-25 (173)
351 4akg_A Glutathione S-transfera 93.3 1.1 3.8E-05 60.4 17.4 79 95-180 1268-1346(2695)
352 2qt1_A Nicotinamide riboside k 93.2 0.047 1.6E-06 53.8 3.6 24 94-117 21-44 (207)
353 2p5t_B PEZT; postsegregational 93.2 0.075 2.6E-06 54.3 5.2 25 93-117 31-55 (253)
354 2grj_A Dephospho-COA kinase; T 93.2 0.055 1.9E-06 52.4 3.9 25 93-117 11-35 (192)
355 1uj2_A Uridine-cytidine kinase 93.2 0.048 1.6E-06 55.7 3.7 24 94-117 22-45 (252)
356 1sgw_A Putative ABC transporte 93.2 0.052 1.8E-06 53.5 3.8 32 96-127 37-68 (214)
357 2c95_A Adenylate kinase 1; tra 93.2 0.043 1.5E-06 53.5 3.2 24 94-117 9-32 (196)
358 3b85_A Phosphate starvation-in 93.2 0.06 2E-06 52.9 4.2 27 87-117 19-45 (208)
359 2olj_A Amino acid ABC transpor 93.2 0.061 2.1E-06 55.0 4.4 33 95-127 51-83 (263)
360 2bwj_A Adenylate kinase 5; pho 93.2 0.044 1.5E-06 53.6 3.2 24 94-117 12-35 (199)
361 3a4m_A L-seryl-tRNA(SEC) kinas 93.2 0.05 1.7E-06 55.9 3.7 24 94-117 4-27 (260)
362 1ls1_A Signal recognition part 93.1 0.21 7.3E-06 52.1 8.5 37 94-130 98-135 (295)
363 2vli_A Antibiotic resistance p 93.1 0.036 1.2E-06 53.3 2.4 24 94-117 5-28 (183)
364 1znw_A Guanylate kinase, GMP k 93.1 0.047 1.6E-06 53.8 3.3 23 95-117 21-43 (207)
365 1ji0_A ABC transporter; ATP bi 93.1 0.064 2.2E-06 54.2 4.3 32 96-127 34-65 (240)
366 2pt5_A Shikimate kinase, SK; a 93.1 0.05 1.7E-06 51.5 3.4 22 96-117 2-23 (168)
367 1vpl_A ABC transporter, ATP-bi 93.1 0.065 2.2E-06 54.6 4.4 33 95-127 42-74 (256)
368 2ff7_A Alpha-hemolysin translo 93.0 0.066 2.3E-06 54.3 4.3 32 96-127 37-68 (247)
369 2j37_W Signal recognition part 93.0 0.56 1.9E-05 52.5 12.2 38 93-130 100-138 (504)
370 1qf9_A UMP/CMP kinase, protein 93.0 0.052 1.8E-06 52.7 3.5 24 94-117 6-29 (194)
371 4g1u_C Hemin import ATP-bindin 93.0 0.063 2.2E-06 55.1 4.2 32 96-127 39-70 (266)
372 2pze_A Cystic fibrosis transme 93.0 0.07 2.4E-06 53.4 4.4 30 96-125 36-65 (229)
373 1g6h_A High-affinity branched- 92.9 0.068 2.3E-06 54.6 4.3 32 96-127 35-66 (257)
374 1zu4_A FTSY; GTPase, signal re 92.9 0.15 5E-06 53.9 7.0 37 93-129 104-141 (320)
375 2cdn_A Adenylate kinase; phosp 92.9 0.054 1.8E-06 53.1 3.4 24 94-117 20-43 (201)
376 2jeo_A Uridine-cytidine kinase 92.9 0.051 1.8E-06 55.2 3.3 24 94-117 25-48 (245)
377 2zts_A Putative uncharacterize 92.8 0.17 5.8E-06 51.4 7.3 46 95-142 31-78 (251)
378 2bbw_A Adenylate kinase 4, AK4 92.8 0.052 1.8E-06 55.2 3.3 24 94-117 27-50 (246)
379 1z6g_A Guanylate kinase; struc 92.8 0.044 1.5E-06 54.5 2.7 24 95-118 24-47 (218)
380 2ixe_A Antigen peptide transpo 92.8 0.072 2.5E-06 54.8 4.3 33 95-127 46-78 (271)
381 4e22_A Cytidylate kinase; P-lo 92.8 0.055 1.9E-06 55.2 3.4 24 94-117 27-50 (252)
382 3p32_A Probable GTPase RV1496/ 92.8 0.17 5.9E-06 54.5 7.5 38 80-117 65-102 (355)
383 2pbr_A DTMP kinase, thymidylat 92.8 0.055 1.9E-06 52.6 3.3 22 96-117 2-23 (195)
384 1s96_A Guanylate kinase, GMP k 92.7 0.057 2E-06 53.6 3.3 23 95-117 17-39 (219)
385 1nn5_A Similar to deoxythymidy 92.7 0.082 2.8E-06 52.3 4.5 30 94-123 9-40 (215)
386 2ihy_A ABC transporter, ATP-bi 92.7 0.078 2.7E-06 54.8 4.4 32 96-127 49-80 (279)
387 2yz2_A Putative ABC transporte 92.7 0.078 2.7E-06 54.5 4.3 32 96-127 35-66 (266)
388 3aez_A Pantothenate kinase; tr 92.7 0.061 2.1E-06 56.6 3.6 24 94-117 90-113 (312)
389 2cbz_A Multidrug resistance-as 92.6 0.056 1.9E-06 54.4 3.2 23 95-117 32-54 (237)
390 3umf_A Adenylate kinase; rossm 92.6 0.07 2.4E-06 52.6 3.7 25 93-117 28-52 (217)
391 1mv5_A LMRA, multidrug resista 92.5 0.071 2.4E-06 54.0 3.8 23 95-117 29-51 (243)
392 1tue_A Replication protein E1; 92.5 0.094 3.2E-06 50.5 4.3 37 80-117 45-81 (212)
393 2i3b_A HCR-ntpase, human cance 92.5 0.057 1.9E-06 52.2 2.8 22 96-117 3-24 (189)
394 2pez_A Bifunctional 3'-phospho 92.4 0.073 2.5E-06 51.0 3.6 24 94-117 5-28 (179)
395 3cmw_A Protein RECA, recombina 92.4 0.15 5.3E-06 65.1 7.4 83 95-182 733-822 (1706)
396 1zd8_A GTP:AMP phosphotransfer 92.4 0.063 2.2E-06 53.8 3.2 24 94-117 7-30 (227)
397 2f1r_A Molybdopterin-guanine d 92.4 0.047 1.6E-06 51.7 2.1 24 94-117 2-25 (171)
398 2wwf_A Thymidilate kinase, put 92.4 0.063 2.2E-06 53.1 3.2 30 94-123 10-41 (212)
399 3vr4_D V-type sodium ATPase su 92.4 0.23 7.9E-06 54.1 7.7 86 96-181 153-259 (465)
400 2z0h_A DTMP kinase, thymidylat 92.3 0.071 2.4E-06 52.0 3.4 22 96-117 2-23 (197)
401 3bgw_A DNAB-like replicative h 92.3 0.26 9E-06 54.7 8.3 47 95-143 198-245 (444)
402 3fb4_A Adenylate kinase; psych 92.3 0.071 2.4E-06 52.9 3.4 22 96-117 2-23 (216)
403 1cr0_A DNA primase/helicase; R 92.3 0.16 5.4E-06 53.3 6.2 35 96-130 37-73 (296)
404 2v54_A DTMP kinase, thymidylat 92.3 0.072 2.5E-06 52.3 3.3 23 95-117 5-27 (204)
405 1aky_A Adenylate kinase; ATP:A 92.2 0.075 2.6E-06 52.9 3.4 24 94-117 4-27 (220)
406 1rj9_A FTSY, signal recognitio 92.2 0.1 3.5E-06 54.6 4.5 24 94-117 102-125 (304)
407 2qi9_C Vitamin B12 import ATP- 92.1 0.096 3.3E-06 53.0 4.2 31 96-127 28-58 (249)
408 3dl0_A Adenylate kinase; phosp 92.1 0.077 2.6E-06 52.7 3.4 22 96-117 2-23 (216)
409 1m7g_A Adenylylsulfate kinase; 92.0 0.085 2.9E-06 52.1 3.6 24 94-117 25-48 (211)
410 1gtv_A TMK, thymidylate kinase 92.0 0.044 1.5E-06 54.3 1.5 22 96-117 2-23 (214)
411 2ffh_A Protein (FFH); SRP54, s 92.0 0.36 1.2E-05 52.8 8.7 36 94-129 98-134 (425)
412 3nwj_A ATSK2; P loop, shikimat 92.0 0.065 2.2E-06 54.3 2.6 22 96-117 50-71 (250)
413 2f6r_A COA synthase, bifunctio 92.0 0.084 2.9E-06 54.8 3.5 23 94-116 75-97 (281)
414 1zak_A Adenylate kinase; ATP:A 92.0 0.067 2.3E-06 53.4 2.7 24 94-117 5-28 (222)
415 1vht_A Dephospho-COA kinase; s 91.9 0.089 3E-06 52.3 3.6 23 94-116 4-26 (218)
416 2yhs_A FTSY, cell division pro 91.9 0.17 5.7E-06 56.1 5.9 41 94-134 293-333 (503)
417 1q57_A DNA primase/helicase; d 91.9 0.27 9.1E-06 55.9 7.9 48 95-144 243-292 (503)
418 3d3q_A TRNA delta(2)-isopenten 91.8 0.09 3.1E-06 55.5 3.6 23 95-117 8-30 (340)
419 1g41_A Heat shock protein HSLU 91.8 0.1 3.5E-06 57.3 4.1 45 73-117 17-73 (444)
420 3b9q_A Chloroplast SRP recepto 91.8 0.091 3.1E-06 55.0 3.6 24 94-117 100-123 (302)
421 1np6_A Molybdopterin-guanine d 91.8 0.093 3.2E-06 49.8 3.3 24 94-117 6-29 (174)
422 3r20_A Cytidylate kinase; stru 91.8 0.093 3.2E-06 52.3 3.4 24 94-117 9-32 (233)
423 2r8r_A Sensor protein; KDPD, P 91.7 0.16 5.3E-06 50.0 4.9 37 95-132 7-45 (228)
424 3lnc_A Guanylate kinase, GMP k 91.7 0.059 2E-06 54.2 2.0 23 95-117 28-51 (231)
425 2pjz_A Hypothetical protein ST 91.6 0.12 4.1E-06 52.8 4.2 31 96-127 32-62 (263)
426 3nh6_A ATP-binding cassette SU 91.6 0.11 3.6E-06 54.4 3.8 23 95-117 81-103 (306)
427 2ghi_A Transport protein; mult 91.6 0.12 4.1E-06 52.8 4.2 32 95-127 47-78 (260)
428 3ake_A Cytidylate kinase; CMP 91.6 0.096 3.3E-06 51.5 3.4 22 96-117 4-25 (208)
429 3rfe_A Platelet glycoprotein I 91.5 0.31 1.1E-05 43.6 6.4 55 424-479 12-68 (130)
430 3cmu_A Protein RECA, recombina 91.5 0.3 1E-05 63.4 8.4 83 95-182 384-473 (2050)
431 3fvq_A Fe(3+) IONS import ATP- 91.5 0.13 4.6E-06 54.7 4.5 33 95-127 31-63 (359)
432 3crm_A TRNA delta(2)-isopenten 91.5 0.1 3.5E-06 54.6 3.6 23 95-117 6-28 (323)
433 3end_A Light-independent proto 91.5 0.18 6E-06 53.2 5.5 40 94-133 41-81 (307)
434 3be4_A Adenylate kinase; malar 91.4 0.098 3.4E-06 51.9 3.3 24 94-117 5-28 (217)
435 2nq2_C Hypothetical ABC transp 91.3 0.13 4.5E-06 52.2 4.1 22 96-117 33-54 (253)
436 3a8t_A Adenylate isopentenyltr 91.3 0.11 3.7E-06 54.6 3.5 24 94-117 40-63 (339)
437 3exa_A TRNA delta(2)-isopenten 91.3 0.11 3.9E-06 53.7 3.6 24 94-117 3-26 (322)
438 1sq5_A Pantothenate kinase; P- 91.3 0.1 3.6E-06 54.9 3.5 38 94-131 80-120 (308)
439 3l0o_A Transcription terminati 91.3 0.44 1.5E-05 50.6 8.0 49 82-131 164-215 (427)
440 2xb4_A Adenylate kinase; ATP-b 91.3 0.11 3.7E-06 51.9 3.4 22 96-117 2-23 (223)
441 1pgv_A TMD-1, tropomodulin TMD 91.2 0.075 2.6E-06 51.2 2.0 81 488-569 69-167 (197)
442 2d2e_A SUFC protein; ABC-ATPas 91.2 0.1 3.6E-06 52.9 3.3 22 96-117 31-52 (250)
443 3tui_C Methionine import ATP-b 91.2 0.16 5.4E-06 54.3 4.7 33 95-127 55-87 (366)
444 3lv8_A DTMP kinase, thymidylat 91.2 0.27 9.2E-06 49.1 6.1 34 94-127 27-62 (236)
445 2zu0_C Probable ATP-dependent 91.2 0.11 3.7E-06 53.4 3.3 33 95-127 47-81 (267)
446 1e4v_A Adenylate kinase; trans 91.2 0.11 3.7E-06 51.5 3.3 22 96-117 2-23 (214)
447 1nlf_A Regulatory protein REPA 91.1 0.17 5.7E-06 52.6 4.8 38 95-132 31-79 (279)
448 3cmw_A Protein RECA, recombina 91.1 0.29 1E-05 62.7 7.7 83 94-181 1431-1520(1706)
449 4tmk_A Protein (thymidylate ki 91.0 0.3 1E-05 48.0 6.2 33 95-127 4-38 (213)
450 1svm_A Large T antigen; AAA+ f 91.0 0.21 7.3E-06 53.8 5.5 24 94-117 169-192 (377)
451 1ak2_A Adenylate kinase isoenz 91.0 0.12 4E-06 52.0 3.3 24 94-117 16-39 (233)
452 4eaq_A DTMP kinase, thymidylat 90.9 0.21 7.3E-06 49.9 5.2 29 94-122 26-55 (229)
453 3d31_A Sulfate/molybdate ABC t 90.9 0.15 5.3E-06 54.2 4.3 33 95-127 27-59 (348)
454 3sr0_A Adenylate kinase; phosp 90.9 0.13 4.4E-06 50.4 3.4 22 96-117 2-23 (206)
455 1oix_A RAS-related protein RAB 90.9 0.14 4.8E-06 49.5 3.7 24 94-117 29-52 (191)
456 2og2_A Putative signal recogni 90.9 0.13 4.3E-06 55.1 3.6 24 94-117 157-180 (359)
457 1z47_A CYSA, putative ABC-tran 90.8 0.18 6E-06 53.9 4.6 32 96-127 43-74 (355)
458 2v9p_A Replication protein E1; 90.7 0.19 6.4E-06 52.4 4.6 23 95-117 127-149 (305)
459 2c61_A A-type ATP synthase non 90.7 0.38 1.3E-05 52.8 7.2 86 96-181 154-260 (469)
460 3upu_A ATP-dependent DNA helic 90.7 0.39 1.3E-05 53.8 7.7 40 75-117 29-68 (459)
461 3foz_A TRNA delta(2)-isopenten 90.7 0.14 4.8E-06 52.9 3.6 24 94-117 10-33 (316)
462 1cp2_A CP2, nitrogenase iron p 90.7 0.26 9E-06 50.7 5.8 38 95-132 2-40 (269)
463 2bbs_A Cystic fibrosis transme 90.7 0.11 3.8E-06 53.9 2.9 23 95-117 65-87 (290)
464 2it1_A 362AA long hypothetical 90.7 0.19 6.4E-06 53.8 4.7 33 95-127 30-62 (362)
465 2dyk_A GTP-binding protein; GT 90.6 0.15 5.1E-06 47.5 3.5 23 95-117 2-24 (161)
466 2yyz_A Sugar ABC transporter, 90.6 0.19 6.4E-06 53.8 4.6 33 95-127 30-62 (359)
467 2qmh_A HPR kinase/phosphorylas 90.6 0.15 5E-06 48.9 3.3 23 95-117 35-57 (205)
468 3rlf_A Maltose/maltodextrin im 90.6 0.19 6.6E-06 54.0 4.7 32 96-127 31-62 (381)
469 1v43_A Sugar-binding transport 90.5 0.19 6.7E-06 53.9 4.7 33 95-127 38-70 (372)
470 1yrb_A ATP(GTP)binding protein 90.5 0.14 4.8E-06 52.5 3.5 24 94-117 14-37 (262)
471 2eyu_A Twitching motility prot 90.4 0.15 5E-06 52.2 3.5 24 94-117 25-48 (261)
472 1g29_1 MALK, maltose transport 90.4 0.2 6.8E-06 54.0 4.6 32 96-127 31-62 (372)
473 2wji_A Ferrous iron transport 90.3 0.15 5.2E-06 47.8 3.3 24 94-117 3-26 (165)
474 1ltq_A Polynucleotide kinase; 90.3 0.15 5.2E-06 53.6 3.6 23 95-117 3-25 (301)
475 2ged_A SR-beta, signal recogni 90.3 0.19 6.5E-06 48.6 4.1 24 94-117 48-71 (193)
476 1a7j_A Phosphoribulokinase; tr 90.3 0.086 2.9E-06 54.9 1.6 24 94-117 5-28 (290)
477 1q3t_A Cytidylate kinase; nucl 90.2 0.15 5.2E-06 51.3 3.4 25 93-117 15-39 (236)
478 1oxx_K GLCV, glucose, ABC tran 90.1 0.16 5.5E-06 54.3 3.6 33 95-127 32-64 (353)
479 2f9l_A RAB11B, member RAS onco 90.1 0.18 6.2E-06 49.1 3.8 24 94-117 5-28 (199)
480 3sop_A Neuronal-specific septi 90.0 0.15 5.3E-06 52.3 3.2 22 96-117 4-25 (270)
481 2afh_E Nitrogenase iron protei 89.9 0.28 9.5E-06 51.1 5.2 39 94-132 2-41 (289)
482 1pgv_A TMD-1, tropomodulin TMD 89.9 0.13 4.5E-06 49.5 2.4 79 490-568 42-135 (197)
483 2zej_A Dardarin, leucine-rich 89.9 0.14 4.6E-06 49.3 2.6 22 96-117 4-25 (184)
484 2qe7_A ATP synthase subunit al 89.8 0.4 1.4E-05 52.9 6.4 85 96-181 164-265 (502)
485 2r9v_A ATP synthase subunit al 89.8 0.39 1.3E-05 53.0 6.3 85 96-181 177-278 (515)
486 3zvl_A Bifunctional polynucleo 89.8 0.16 5.4E-06 56.0 3.4 24 94-117 258-281 (416)
487 4edh_A DTMP kinase, thymidylat 89.8 0.49 1.7E-05 46.5 6.5 30 95-124 7-38 (213)
488 2vp4_A Deoxynucleoside kinase; 89.6 0.13 4.6E-06 51.5 2.4 24 94-117 20-43 (230)
489 1tq4_A IIGP1, interferon-induc 89.6 0.2 6.7E-06 54.7 3.8 24 94-117 69-92 (413)
490 3io3_A DEHA2D07832P; chaperone 89.5 0.36 1.2E-05 51.5 5.7 39 94-132 18-59 (348)
491 1fzq_A ADP-ribosylation factor 89.5 0.21 7.2E-06 47.7 3.6 25 93-117 15-39 (181)
492 3llm_A ATP-dependent RNA helic 89.4 0.66 2.2E-05 46.5 7.4 30 82-115 68-97 (235)
493 3kta_A Chromosome segregation 89.4 0.19 6.4E-06 48.2 3.2 22 96-117 28-49 (182)
494 3iqw_A Tail-anchored protein t 89.4 0.41 1.4E-05 50.8 6.1 40 94-133 16-56 (334)
495 2wjg_A FEOB, ferrous iron tran 89.4 0.22 7.6E-06 47.8 3.8 24 94-117 7-30 (188)
496 3hjn_A DTMP kinase, thymidylat 89.4 0.97 3.3E-05 43.7 8.3 22 96-117 2-23 (197)
497 3ld9_A DTMP kinase, thymidylat 89.3 0.4 1.4E-05 47.4 5.5 32 94-125 21-55 (223)
498 2ce2_X GTPase HRAS; signaling 89.2 0.19 6.4E-06 46.9 3.0 22 96-117 5-26 (166)
499 1nij_A Hypothetical protein YJ 89.2 0.19 6.6E-06 53.1 3.3 24 94-117 4-27 (318)
500 3oaa_A ATP synthase subunit al 89.1 0.95 3.3E-05 49.8 8.7 86 96-181 164-265 (513)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.5e-45 Score=430.87 Aligned_cols=306 Identities=15% Similarity=0.208 Sum_probs=240.0
Q ss_pred cchHHHHHHHHHHhhcC-CCceeEEEEEcCCCChHHHHHHHHHh----h-cCCCCEEEEEEeCCCC--CHHHHHHHHHHH
Q 002037 74 KSALEVIKSVMKLLKDN-SISINIIGVYGSGGIGKTTLMKQVMK----Q-EIPFDKVIFVRVTQTP--DVKRVQDEIARF 145 (977)
Q Consensus 74 ~gr~~~~~~l~~~l~~~-~~~~~vi~I~G~gGiGKTtLa~~v~~----~-~~~f~~~~wv~~~~~~--~~~~~~~~i~~~ 145 (977)
+||+++++++.++|..+ +...++|+|+||||+||||||+++|+ . ..+|++++||++++.. +...+++.|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999765 33489999999999999999999997 3 8899999999999985 889999999999
Q ss_pred hhhccc--------cchHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhcc-C
Q 002037 146 LNTELE--------GDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEME-S 216 (977)
Q Consensus 146 l~~~~~--------~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~-~ 216 (977)
++.... ..........+++.+...|||||||||||+..++ .+. ..+||+||||||++.++..++ .
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~-----~~~gs~ilvTTR~~~v~~~~~~~ 284 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWA-----QELRLRCLVTTRDVEISNAASQT 284 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHH-----HHTTCEEEEEESBGGGGGGCCSC
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccc-----ccCCCEEEEEcCCHHHHHHcCCC
Confidence 975421 1123345667778886324999999999998654 221 127999999999999988776 3
Q ss_pred CceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhhCCCCCCC
Q 002037 217 TNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPINVE 296 (977)
Q Consensus 217 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~~~ 296 (977)
..+|+|++|+.++||+||.++++....++..++++++|+++|+|+||||+++|+.++.+. |..+ +.+..... +.
T Consensus 285 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~~~l~-~~- 358 (549)
T 2a5y_B 285 CEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLNNKLE-SR- 358 (549)
T ss_dssp EEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHHHHHH-HH-
T ss_pred CeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhHHHhh-cc-
Confidence 367999999999999999999985444578889999999999999999999999998663 4332 33222110 00
Q ss_pred CchHHHHHHHHHhhccchhhHHHHHh-----------hhcCCCCCCCcChHHHHHHHhhh--ccccccc---chhhhhhc
Q 002037 297 GIPEEVVLCVALGYDQLETVAKSCLQ-----------FSCLFPPYYSVSMEEFVIHGLVD--RLFPQVG---LLGEVGNR 360 (977)
Q Consensus 297 ~~~~~i~~~l~~sy~~L~~~~k~~fl-----------~~~~fp~~~~i~~~~li~~w~a~--g~~~~~~---~~~~~~~~ 360 (977)
. ...+.+++.+||++||+++|.||+ |||+||+++.|+ ++.|+|+ ||+.... +.++++
T Consensus 359 ~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~-- 431 (549)
T 2a5y_B 359 G-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVA-- 431 (549)
T ss_dssp C-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHH--
T ss_pred c-HHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHH--
Confidence 0 145778899999999999999999 999999999998 8899999 9997532 334433
Q ss_pred HHHHHHHHHhcccccCCC--CcccccchhhHHHHHHHHHhhc
Q 002037 361 VHPVVLRLISSSLLLEGD--RESCFRIHDDTRKVVKYIAARE 400 (977)
Q Consensus 361 ~~~~l~~L~~~~li~~~~--~~~~~~mHdlv~~~a~~i~~~e 400 (977)
+++++|+++||++... ...+|+|||+||++|+.++.++
T Consensus 432 --~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 432 --DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp --HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred --HHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 2799999999998643 3457999999999999887654
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.8e-38 Score=369.48 Aligned_cols=280 Identities=19% Similarity=0.198 Sum_probs=224.7
Q ss_pred ccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh---cCCCCE-EEEEEeCCCCCHHHHHHHHHHHhhh
Q 002037 73 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ---EIPFDK-VIFVRVTQTPDVKRVQDEIARFLNT 148 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~---~~~f~~-~~wv~~~~~~~~~~~~~~i~~~l~~ 148 (977)
.+||++++++|.++|...+ ..++|+|+||||+||||||+++|++ ..+|+. ++|+++++.++...++..|++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~ 208 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhh
Confidence 3899999999999997633 2789999999999999999999975 678985 9999999999988888888876543
Q ss_pred ccc------c------chHHHHHHHHHHHHH--ccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhc
Q 002037 149 ELE------G------DVEVLRAAFLSERLK--RQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEM 214 (977)
Q Consensus 149 ~~~------~------~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~ 214 (977)
... . .........+++.++ .++|+||||||||+...|+.+ .+||+||||||++.++..+
T Consensus 209 i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l 281 (1221)
T 1vt4_I 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFL 281 (1221)
T ss_dssp HCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHH
T ss_pred cCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhc
Confidence 210 0 111233445555552 479999999999998888754 2689999999999998655
Q ss_pred cCCceEEcc------CCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCC--ChhHHHHHHHH
Q 002037 215 ESTNYVQVE------ELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHK--PVREWNEAIKR 286 (977)
Q Consensus 215 ~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~--~~~~w~~~l~~ 286 (977)
.....|+++ +|+.+||++||.++.+.. ..++..+| |+|+||||+++|+.|+.+ +.++|...
T Consensus 282 ~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~--- 350 (1221)
T 1vt4_I 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV--- 350 (1221)
T ss_dssp HHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC---
T ss_pred CCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC---
Confidence 444456666 999999999999986422 22333443 999999999999999965 67788652
Q ss_pred HhhCCCCCCCCchHHHHHHHHHhhccchhhH-HHHHhhhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHH
Q 002037 287 KKASTPINVEGIPEEVVLCVALGYDQLETVA-KSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVV 365 (977)
Q Consensus 287 l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l 365 (977)
+ ...+..++.+||+.||+++ |.||+|||+||+++.|+++.++..|+++| ++ .+..++
T Consensus 351 ----------~-~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG--------ee---dAe~~L 408 (1221)
T 1vt4_I 351 ----------N-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI--------KS---DVMVVV 408 (1221)
T ss_dssp ----------S-CHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC--------SH---HHHHHH
T ss_pred ----------C-hhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC--------HH---HHHHHH
Confidence 1 2789999999999999999 99999999999999999999999999887 11 244589
Q ss_pred HHHHhcccccCCCCcccccchhhHHHHH
Q 002037 366 LRLISSSLLLEGDRESCFRIHDDTRKVV 393 (977)
Q Consensus 366 ~~L~~~~li~~~~~~~~~~mHdlv~~~a 393 (977)
++|+++||++..+...+|+|||++++++
T Consensus 409 ~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 409 NKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999998765667899999999865
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-36 Score=396.71 Aligned_cols=309 Identities=19% Similarity=0.280 Sum_probs=246.2
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh----cCCC-CEEEEEEeCCCCC--HHHHHHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPF-DKVIFVRVTQTPD--VKRVQDEI 142 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~f-~~~~wv~~~~~~~--~~~~~~~i 142 (977)
...|+||++++++|.++|...+..+++|+|+||||+||||||+++|++ ..+| +.++||++++..+ ....+..+
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 202 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNL 202 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHH
Confidence 346899999999999999765556899999999999999999999987 3334 7889999998543 34446667
Q ss_pred HHHhhhccc-----cchHHHHHHHHHHHHHc-cceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhh-cc
Q 002037 143 ARFLNTELE-----GDVEVLRAAFLSERLKR-QKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDE-ME 215 (977)
Q Consensus 143 ~~~l~~~~~-----~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~-~~ 215 (977)
+..+..... ..........++..+.. ++|+||||||||+..+|..+ ++||+||||||++.++.. ..
T Consensus 203 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~ 275 (1249)
T 3sfz_A 203 CMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG 275 (1249)
T ss_dssp HHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS
T ss_pred HHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcC
Confidence 777654321 12334455566666642 34999999999998777643 578999999999999854 45
Q ss_pred CCceEEccC-CCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhhCCCCC
Q 002037 216 STNYVQVEE-LTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTPIN 294 (977)
Q Consensus 216 ~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~~~ 294 (977)
....+++++ |+.+||++||...++. ..+...+++++|+++|+|+||||+++|++|+.++ .+|...++.+.......
T Consensus 276 ~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~ 352 (1249)
T 3sfz_A 276 PKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKR 352 (1249)
T ss_dssp CBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCC
T ss_pred CceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhh
Confidence 567899996 9999999999998863 2345567899999999999999999999999765 57999999987665333
Q ss_pred CCC----chHHHHHHHHHhhccchhhHHHHHhhhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHHHHHh
Q 002037 295 VEG----IPEEVVLCVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRLIS 370 (977)
Q Consensus 295 ~~~----~~~~i~~~l~~sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~ 370 (977)
+.. ..+.+..++.+||+.||+++|.||+|||+||+++.|+++.++..|.+++ +.+.+++++|++
T Consensus 353 ~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~L~~ 420 (1249)
T 3sfz_A 353 IRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLET------------EEVEDILQEFVN 420 (1249)
T ss_dssp SSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCH------------HHHHHHHHHHHh
Confidence 221 2267999999999999999999999999999999999999999997653 233457999999
Q ss_pred cccccCCCC--cccccchhhHHHHHHHHHhhc
Q 002037 371 SSLLLEGDR--ESCFRIHDDTRKVVKYIAARE 400 (977)
Q Consensus 371 ~~li~~~~~--~~~~~mHdlv~~~a~~i~~~e 400 (977)
++|++.... ..+|+||+++|++++..+.++
T Consensus 421 ~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 421 KSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp TTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 999976432 235999999999999986544
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=334.97 Aligned_cols=304 Identities=19% Similarity=0.246 Sum_probs=233.6
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh----cCCC-CEEEEEEeCCCCCHHHHHHHH--
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----EIPF-DKVIFVRVTQTPDVKRVQDEI-- 142 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~~~f-~~~~wv~~~~~~~~~~~~~~i-- 142 (977)
...|+||+++++++.+++.......++|+|+||||+||||||++++++ ..+| +.++|++++.. +...+...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~ 201 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQN 201 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHH
Confidence 346899999999999999764445889999999999999999999986 4678 58999999875 333444444
Q ss_pred -HHHhhhc-----cccchHHHHHHHHHHHHHc-cceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHhhcc
Q 002037 143 -ARFLNTE-----LEGDVEVLRAAFLSERLKR-QKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCDEME 215 (977)
Q Consensus 143 -~~~l~~~-----~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~ 215 (977)
+..++.. ............+...+.. .+++||||||||+...+..+ .+|++||||||++.++..+.
T Consensus 202 l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~ 274 (591)
T 1z6t_A 202 LCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM 274 (591)
T ss_dssp HHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC
T ss_pred HHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC
Confidence 3344321 1122334455566666653 37899999999987655432 56899999999999876544
Q ss_pred CCceEEc---cCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHhcCCChhHHHHHHHHHhhCCC
Q 002037 216 STNYVQV---EELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTALRHKPVREWNEAIKRKKASTP 292 (977)
Q Consensus 216 ~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l~~~~~~~w~~~l~~l~~~~~ 292 (977)
...+++ ++|+.+||++||.+.++. ......+.+.+|+++|+|+||||.++|+.++... .+|..+++.+.....
T Consensus 275 -~~~~~v~~l~~L~~~ea~~L~~~~~~~--~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~ 350 (591)
T 1z6t_A 275 -GPKYVVPVESSLGKEKGLEILSLFVNM--KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQF 350 (591)
T ss_dssp -SCEEEEECCSSCCHHHHHHHHHHHHTS--CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCC
T ss_pred -CCceEeecCCCCCHHHHHHHHHHHhCC--CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHH
Confidence 244555 589999999999999873 2233456789999999999999999999998653 479999998876543
Q ss_pred CCCC----CchHHHHHHHHHhhccchhhHHHHHhhhcCCCCCCCcChHHHHHHHhhhcccccccchhhhhhcHHHHHHHH
Q 002037 293 INVE----GIPEEVVLCVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVIHGLVDRLFPQVGLLGEVGNRVHPVVLRL 368 (977)
Q Consensus 293 ~~~~----~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L 368 (977)
..+. .....+..++.+||+.||++.|.||++||+||+++.|+.+.+...|.+++ ..+..++++|
T Consensus 351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------------~~~~~~l~~L 418 (591)
T 1z6t_A 351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMET------------EEVEDILQEF 418 (591)
T ss_dssp CCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCH------------HHHHHHHHHH
T ss_pred HHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCH------------HHHHHHHHHH
Confidence 2221 12268999999999999999999999999999999999999999996432 1234579999
Q ss_pred HhcccccCCC--CcccccchhhHHHHHHHHH
Q 002037 369 ISSSLLLEGD--RESCFRIHDDTRKVVKYIA 397 (977)
Q Consensus 369 ~~~~li~~~~--~~~~~~mHdlv~~~a~~i~ 397 (977)
+++||++... ...+|+||+++|++++...
T Consensus 419 ~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 419 VNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred HhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 9999997533 3347999999999998873
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=1.1e-30 Score=312.69 Aligned_cols=500 Identities=16% Similarity=0.100 Sum_probs=311.3
Q ss_pred CCcCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCC
Q 002037 408 PGMKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APS 484 (977)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~ 484 (977)
+.....+|..-..+++.|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|++++|.+..+ |..
T Consensus 20 ~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~ 99 (606)
T 3vq2_A 20 DQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGS 99 (606)
T ss_dssp TSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTS
T ss_pred CCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhh
Confidence 333455555445788999999998887765 56889999999999988888777788899999999999998887 668
Q ss_pred cccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCc--ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCcc
Q 002037 485 LPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQ 560 (977)
Q Consensus 485 ~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~ 560 (977)
++.+++|++|++++|.+.. +..++++++|++|++++|.+. .+|..++++++|++|++++|.+....|.. ++.+++
T Consensus 100 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~ 178 (606)
T 3vq2_A 100 FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRE 178 (606)
T ss_dssp STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHH
T ss_pred cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhc
Confidence 8999999999999998877 467889999999999999887 47888999999999999998765544433 666666
Q ss_pred cc----EEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcc-ccccCCCCCCCCcceEEEEecCcccCC--
Q 002037 561 LE----ELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTK-VLSVDFDGPWTNLKRFRVCVNDDYWEI-- 633 (977)
Q Consensus 561 L~----~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~-- 633 (977)
|+ +|+++++..... ........+|+.|+++.+... ......++.+++|+.+.+..+......
T Consensus 179 L~~~l~~L~l~~n~l~~~-----------~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 179 NPQVNLSLDMSLNPIDFI-----------QDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTCCCEEECTTCCCCEE-----------CTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccceeeccCCCccee-----------CcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 65 788877642211 111122236777777766542 122233345666666655443211100
Q ss_pred --------CC-----cceeee---cccchhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeecccccccc
Q 002037 634 --------AP-----KRSMHL---KNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRI 697 (977)
Q Consensus 634 --------~~-----~~~l~l---~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~ 697 (977)
.. ...+.+ .......|. ...+++|+.|++.++. +..++ ....+++|+.|++++|.+ ..
T Consensus 248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~-~~~l~--~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVS-IKYLE--DVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCC-CCCCC--CCCTTCCCSEEEEESCCC-SS
T ss_pred cccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCcc-chhhh--hccccccCCEEEcccccC-cc
Confidence 00 011111 011112222 1224678888887653 34444 345577888888888877 44
Q ss_pred ccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCc
Q 002037 698 FHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKL 777 (977)
Q Consensus 698 ~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L 777 (977)
+| . + .+++|+.|+++++...... ... .+++|+.|+++++. ++.+.........+++|+.|++++|. +
T Consensus 322 lp-~-~-~l~~L~~L~l~~n~~~~~~-~~~-------~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~-l 388 (606)
T 3vq2_A 322 FP-T-L-DLPFLKSLTLTMNKGSISF-KKV-------ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNG-A 388 (606)
T ss_dssp CC-C-C-CCSSCCEEEEESCSSCEEC-CCC-------CCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCS-E
T ss_pred cc-c-C-CCCccceeeccCCcCccch-hhc-------cCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCc-c
Confidence 44 2 2 7788888888887544432 222 36777777777652 33221112233456666666666643 4
Q ss_pred ccccchhHHhhcCCCceEEecccccccceec-cch-hhhhhccccc-cccCCC-C-CCCcCCCccEEEeccccCcceecc
Q 002037 778 RYLFSRTLAEGLGNLEDLSILKCDLMEEIVS-VDE-AEVEQGAAQE-RNVSSA-P-QPMFFPNLKKLLIGKCNKMKRVLS 852 (977)
Q Consensus 778 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~-~~~-~~~~~~~~~~-~~l~~l-~-~~~~~~~L~~L~l~~c~~l~~~~~ 852 (977)
..++ ..+..+++|+.|++++|......+. ... ........+. ..+... + ....+++|+.|++.+|.-.... .
T Consensus 389 ~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 465 (606)
T 3vq2_A 389 IIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-L 465 (606)
T ss_dssp EEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE-E
T ss_pred ccch--hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc-h
Confidence 4432 2234556666666666543222110 000 0000000000 000000 1 1235788888988887543322 2
Q ss_pred cccccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCC
Q 002037 853 LTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPK 932 (977)
Q Consensus 853 ~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 932 (977)
...+..+++|++|++++|. ++.+. +..+..+++|++|++++|+ ++.+....+. .+++|++|++++|.
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~--~l~~L~~L~l~~N~- 532 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQ-LEQIS--------WGVFDTLHRLQLLNMSHNN-LLFLDSSHYN--QLYSLSTLDCSFNR- 532 (606)
T ss_dssp CSCCTTCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSSC-CSCEEGGGTT--TCTTCCEEECTTSC-
T ss_pred HHhhccCCCCCEEECCCCc-CCccC--------hhhhcccccCCEEECCCCc-CCCcCHHHcc--CCCcCCEEECCCCc-
Confidence 3356788999999999884 43331 4456788999999999974 6666443333 37899999999875
Q ss_pred CCCCCCCCCCCc-cccccccchh
Q 002037 933 LMKLPLDTRSAP-KLETFKAHSA 954 (977)
Q Consensus 933 L~~lp~~~~~~~-~L~~l~~~~~ 954 (977)
++.+|..+..++ +|+.++++..
T Consensus 533 l~~~p~~~~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 533 IETSKGILQHFPKSLAFFNLTNN 555 (606)
T ss_dssp CCCEESCGGGSCTTCCEEECCSC
T ss_pred CcccCHhHhhhcccCcEEEccCC
Confidence 889998888887 5998875433
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.9e-30 Score=310.65 Aligned_cols=481 Identities=15% Similarity=0.126 Sum_probs=339.6
Q ss_pred cCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcc
Q 002037 410 MKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLP 486 (977)
Q Consensus 410 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~ 486 (977)
....+|..-...++.|++++|.+..++. +.++++|++|++++|.+..+.+..|.++++|++|++++|.+..+ |..++
T Consensus 23 ~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 23 GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred CcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 3445555445689999999999988753 57899999999999999988888889999999999999999876 55899
Q ss_pred cCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCCccChhhhhcCcccc-
Q 002037 487 CLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLE- 562 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~- 562 (977)
.+++|++|++++|.+.. +..++.+++|++|++++|.+..++ ..+..+++|++|++++|.+. .+++..++.+++|+
T Consensus 103 ~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 181 (606)
T 3t6q_A 103 GPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATN 181 (606)
T ss_dssp SCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCS
T ss_pred ccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccce
Confidence 99999999999999988 578899999999999999999763 33455999999999999855 45555589999999
Q ss_pred -EEEccCCcCCccccccccCc------------------------------------------CccccccccCCCCcEEE
Q 002037 563 -ELYVGNSFGDWEVEETANGQ------------------------------------------NARFSEVASLTRLTVLY 599 (977)
Q Consensus 563 -~L~l~~~~~~~~~~~~~~~~------------------------------------------~~~~~~l~~l~~L~~L~ 599 (977)
+|+++++......+...... ...+..+..+ +|+.|+
T Consensus 182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~L~~L~ 260 (606)
T 3t6q_A 182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESIN 260 (606)
T ss_dssp EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-EEEEEE
T ss_pred eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-ceeEEE
Confidence 88888764332221111000 0001111111 577777
Q ss_pred eeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccccccccC
Q 002037 600 IHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQ 679 (977)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 679 (977)
++.+.....+...+..+++|+.|++..+.... . |.++. .+++|+.|++.++ .+..+......
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l---------------p~~l~-~l~~L~~L~l~~n-~l~~~~~~~~~ 322 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSE-L---------------PSGLV-GLSTLKKLVLSAN-KFENLCQISAS 322 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-C---------------CSSCC-SCTTCCEEECTTC-CCSBGGGGCGG
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCC-C---------------Chhhc-ccccCCEEECccC-CcCcCchhhhh
Confidence 87777777777777778888888887654221 1 11110 1367888888775 33444444556
Q ss_pred CCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccc
Q 002037 680 GFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHS 759 (977)
Q Consensus 680 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~ 759 (977)
.+++|+.|++++|.+....+...+..+++|++|+++++.- ...... ......+++|+.|++.++. ++.+ ....
T Consensus 323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~---~~~~~~l~~L~~L~l~~n~-l~~~--~~~~ 395 (606)
T 3t6q_A 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDI-ETSDCC---NLQLRNLSHLQSLNLSYNE-PLSL--KTEA 395 (606)
T ss_dssp GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCC-CEEEES---TTTTTTCTTCCEEECCSCS-CEEE--CTTT
T ss_pred ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcc-ccccCc---chhcccCCCCCEEECCCCc-CCcC--CHHH
Confidence 7889999999999877777777788899999999988743 222210 0112248899999998874 3332 2234
Q ss_pred cccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEE
Q 002037 760 VVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKL 839 (977)
Q Consensus 760 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L 839 (977)
+..+++|+.|++++| ++....+...+..+++|+.|++++|......+.. ...+++|++|
T Consensus 396 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--------------------~~~l~~L~~L 454 (606)
T 3t6q_A 396 FKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL--------------------FDGLPALQHL 454 (606)
T ss_dssp TTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT--------------------TTTCTTCCEE
T ss_pred hcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHH--------------------HhCCCCCCEE
Confidence 557889999999885 4444444444578899999999988643222211 1247999999
Q ss_pred EeccccCcce-ecccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccccccCcccccc
Q 002037 840 LIGKCNKMKR-VLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALR 918 (977)
Q Consensus 840 ~l~~c~~l~~-~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~ 918 (977)
++++|+--.. +.....+..+++|++|++++|. ++.+. +..+..+++|+.|+++++. ++.+....+. .
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~--~ 522 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID--------QHAFTSLKMMNHVDLSHNR-LTSSSIEALS--H 522 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC--------TTTTTTCTTCCEEECCSSC-CCGGGGGGGT--T
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCc-cCccC--------hhhhccccCCCEEECCCCc-cCcCChhHhC--c
Confidence 9999865432 2222457889999999999995 44432 4456788999999999974 6655544443 3
Q ss_pred CCCccEEEeccCCCCCCC-CCCCCCCccccccccc
Q 002037 919 WPSLEELKVWDCPKLMKL-PLDTRSAPKLETFKAH 952 (977)
Q Consensus 919 ~~sL~~L~i~~C~~L~~l-p~~~~~~~~L~~l~~~ 952 (977)
+++| +|++++|. +..+ |..+..+++|+.++++
T Consensus 523 l~~L-~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 523 LKGI-YLNLASNH-ISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp CCSC-EEECCSSC-CCCCCGGGHHHHHTSSEEECT
T ss_pred cccc-EEECcCCc-ccccCHhhcccCCCCCEEeCC
Confidence 6889 99998875 5554 4445677888888754
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.97 E-value=1.1e-29 Score=304.06 Aligned_cols=492 Identities=17% Similarity=0.132 Sum_probs=338.4
Q ss_pred ccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCC
Q 002037 422 CEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTH 500 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 500 (977)
-+.++.+++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.+..+++ .++.+++|++|++++|.
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDI-PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCceEccCCCcccCCCCC-CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 346777788888888743 3899999999999999988889999999999999999998854 78999999999999999
Q ss_pred CCC--CccccCCCCccEEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCC-ccChhhhhcCccccEEEccCCcCCcccc
Q 002037 501 LND--ASLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQ-VIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 501 l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~-~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
+.. |..++++++|++|++++|.+..+| ..++++++|++|++++|.+.. .+|.. ++++++|++|+++++.....
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~~~-- 168 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQTI-- 168 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCCEE--
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcceec--
Confidence 887 678999999999999999999887 669999999999999998665 56877 89999999999998743211
Q ss_pred ccccCcCccccccccCCC-CcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCC--------CCcceeeec--c--
Q 002037 577 ETANGQNARFSEVASLTR-LTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEI--------APKRSMHLK--N-- 643 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~~l~l~--~-- 643 (977)
....+..+.+++. +..|+++.+.....+...+... +|+.|++..+...... ...+.+.+. .
T Consensus 169 -----~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 169 -----TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp -----CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred -----ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 1122333444443 5689999988887777666544 8999999876422100 111111110 0
Q ss_pred -------cchhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEe
Q 002037 644 -------LSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEY 716 (977)
Q Consensus 644 -------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 716 (977)
.....+..+.. -+++.+.+.....+...... ...+++|+.|++.++.+.... .++.+++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~l~~--l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLCD--VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIR 316 (606)
T ss_dssp TSCCCSCCCGGGGTTGGG--SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEES
T ss_pred cCCcccccChHHhhhhhh--ccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh---hccccccCCEEEccc
Confidence 00000000000 02333333233333332111 556899999999999776543 577889999999999
Q ss_pred ecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCccccc-chhHHhhcCCCceE
Q 002037 717 CYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLF-SRTLAEGLGNLEDL 795 (977)
Q Consensus 717 ~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~-~~~~~~~l~~L~~L 795 (977)
|.. ..++.+ .+++|+.|.+.++..+..+ ....+++|+.|++++| .+.... .+..+..+++|++|
T Consensus 317 n~l-~~lp~~--------~l~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~L~~L 381 (606)
T 3vq2_A 317 CQL-KQFPTL--------DLPFLKSLTLTMNKGSISF-----KKVALPSLSYLDLSRN-ALSFSGCCSYSDLGTNSLRHL 381 (606)
T ss_dssp CCC-SSCCCC--------CCSSCCEEEEESCSSCEEC-----CCCCCTTCCEEECCSS-CEEEEEECCHHHHCCSCCCEE
T ss_pred ccC-cccccC--------CCCccceeeccCCcCccch-----hhccCCCCCEEECcCC-ccCCCcchhhhhccCCcccEe
Confidence 965 554433 3899999999999665542 4567999999999996 455442 13456789999999
Q ss_pred Eecccccccceeccchh-hhhhccccc-cccCCC---CCCCcCCCccEEEeccccCcceecccccccccccccEEEEecc
Q 002037 796 SILKCDLMEEIVSVDEA-EVEQGAAQE-RNVSSA---PQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASC 870 (977)
Q Consensus 796 ~l~~c~~l~~i~~~~~~-~~~~~~~~~-~~l~~l---~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C 870 (977)
++++|. +..++..... .......+. ..+... .....+++|+.|++++|.-.... ...+..+++|++|++++|
T Consensus 382 ~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n 458 (606)
T 3vq2_A 382 DLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF--DGIFLGLTSLNTLKMAGN 458 (606)
T ss_dssp ECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC--TTTTTTCTTCCEEECTTC
T ss_pred ECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc--hhhhcCCCCCCEEECCCC
Confidence 999986 3434321110 000000000 011122 12345788888888887643322 334677888888888888
Q ss_pred cccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCCCCCCccccccc
Q 002037 871 NHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFK 950 (977)
Q Consensus 871 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~ 950 (977)
.-...+ .+..+..+++|+.|++++| .++.++...+. .+++|++|++++|.--...|..+..+++|+.|+
T Consensus 459 ~l~~~~--------~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 459 SFKDNT--------LSNVFANTTNLTFLDLSKC-QLEQISWGVFD--TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp EEGGGE--------ECSCCTTCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred cCCCcc--------hHHhhccCCCCCEEECCCC-cCCccChhhhc--ccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 533211 1445678899999999997 46666554433 379999999999853333477888899999999
Q ss_pred cchhhhhh
Q 002037 951 AHSAWFEK 958 (977)
Q Consensus 951 ~~~~~~~~ 958 (977)
++......
T Consensus 528 l~~N~l~~ 535 (606)
T 3vq2_A 528 CSFNRIET 535 (606)
T ss_dssp CTTSCCCC
T ss_pred CCCCcCcc
Confidence 87655443
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=4.7e-28 Score=293.97 Aligned_cols=528 Identities=17% Similarity=0.158 Sum_probs=321.0
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-Cccc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPC 487 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~ 487 (977)
...+|..-..++++|++++|.+..++. +.++++|++|++++|.+..+++..|.++++|++|++++|.+..+|+ .++.
T Consensus 16 L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 95 (680)
T 1ziw_A 16 LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95 (680)
T ss_dssp CSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhcc
Confidence 444554445789999999999988775 5788999999999999999988889999999999999999999988 6999
Q ss_pred CCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCCccChhhhh--cCcccc
Q 002037 488 LEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVIS--KLSQLE 562 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~--~L~~L~ 562 (977)
+++|++|++++|.+.. +..++++++|++|++++|.+...+ ..++++++|++|++++|.+.. +++..++ .+++|+
T Consensus 96 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~~~L~ 174 (680)
T 1ziw_A 96 CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-LKSEELDIFANSSLK 174 (680)
T ss_dssp CTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC-BCHHHHGGGTTCEES
T ss_pred CCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc-cCHHHhhcccccccc
Confidence 9999999999999887 467999999999999999988664 558899999999999998544 5544344 568999
Q ss_pred EEEccCCcCCccccccccCcCcccccc------------------ccCCCCcEEEeeecCccccccCCCCCCC--CcceE
Q 002037 563 ELYVGNSFGDWEVEETANGQNARFSEV------------------ASLTRLTVLYIHVSNTKVLSVDFDGPWT--NLKRF 622 (977)
Q Consensus 563 ~L~l~~~~~~~~~~~~~~~~~~~~~~l------------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~--~L~~L 622 (977)
+|+++++......+...... ..+..+ -..++|+.|+++.+.........+..++ +|+.|
T Consensus 175 ~L~L~~n~l~~~~~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L 253 (680)
T 1ziw_A 175 KLELSSNQIKEFSPGCFHAI-GRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTML 253 (680)
T ss_dssp EEECTTCCCCCBCTTGGGGS-SEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEE
T ss_pred EEECCCCcccccChhhhhhh-hhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEE
Confidence 99998874322111100000 000000 0113344444444433333222222222 24444
Q ss_pred EEEecCccc-------CCCCcceeeecccc--hhhHHHHHHHHhccceeEecCCCC--------cccccccccCCCCCcc
Q 002037 623 RVCVNDDYW-------EIAPKRSMHLKNLS--NSIASWVKLLLEKTEYLTLTRSSN--------LQDIGEIDVQGFTGLM 685 (977)
Q Consensus 623 ~l~~~~~~~-------~~~~~~~l~l~~~~--~~~~~~~~~~~~~L~~L~l~~~~~--------~~~~~~l~~~~l~~L~ 685 (977)
++..+.... ..+..+.+.+.+.. ...|.++. .+++|+.|++.++.. +..+.......+++|+
T Consensus 254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~ 332 (680)
T 1ziw_A 254 DLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLE 332 (680)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCC
T ss_pred ECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCC
Confidence 444332110 01122222222211 11111111 146777888765321 1222333456688899
Q ss_pred EEeeccccccccccCCcccccccceEEEEEeecc-cceeeeccccccccccccccceeeccCccCcceeeeccccccccc
Q 002037 686 CMHLRACSMQRIFHSNFYPTVQILEELHVEYCYS-LKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLK 764 (977)
Q Consensus 686 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~ 764 (977)
.|++++|.+.... ...+..+++|+.|+++++.. +..+.. ... .....++|+.|++.++. ++.+ .+..+..++
T Consensus 333 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~l~~-~~f--~~~~~~~L~~L~L~~n~-l~~~--~~~~~~~l~ 405 (680)
T 1ziw_A 333 HLNMEDNDIPGIK-SNMFTGLINLKYLSLSNSFTSLRTLTN-ETF--VSLAHSPLHILNLTKNK-ISKI--ESDAFSWLG 405 (680)
T ss_dssp EEECCSCCBCCCC-TTTTTTCTTCCEEECTTCBSCCCEECT-TTT--GGGTTSCCCEEECTTSC-CCEE--CTTTTTTCT
T ss_pred EEECCCCccCCCC-hhHhccccCCcEEECCCCchhhhhcch-hhh--cccccCcCceEECCCCC-CCeE--ChhhhhCCC
Confidence 9999988777643 34567788899999887642 222111 100 00113577888887763 3433 123345678
Q ss_pred ccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceecc-chh-hhhhccccc-ccc---CCCC-CCCcCCCcc
Q 002037 765 TLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSV-DEA-EVEQGAAQE-RNV---SSAP-QPMFFPNLK 837 (977)
Q Consensus 765 ~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~-~~~-~~~~~~~~~-~~l---~~l~-~~~~~~~L~ 837 (977)
+|+.|+++++. +....+...+.++++|++|++++|... .+... ... .......+. ..+ ...+ ....+++|+
T Consensus 406 ~L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 406 HLEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp TCCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCSEE-ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCEEeCCCCc-CccccCcccccCcccccEEecCCCCcc-eeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 88888888754 332223334567788888888877532 21110 000 000000000 001 1111 123578888
Q ss_pred EEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccccccCccccc
Q 002037 838 KLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAAL 917 (977)
Q Consensus 838 ~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~ 917 (977)
.|++++|. ++.+ +...+..+++|++|+++++. ++.+....-.......+..+++|+.|+++++ +++.++.+.+.
T Consensus 484 ~L~Ls~N~-l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~-- 557 (680)
T 1ziw_A 484 ILDLSNNN-IANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFK-- 557 (680)
T ss_dssp EEECCSSC-CCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTT--
T ss_pred EEECCCCC-CCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcc--
Confidence 88888864 5554 33446778889999998874 3322110000000122567899999999986 57777765443
Q ss_pred cCCCccEEEeccCCCCCCCCCCC-CCCccccccccchhhhh
Q 002037 918 RWPSLEELKVWDCPKLMKLPLDT-RSAPKLETFKAHSAWFE 957 (977)
Q Consensus 918 ~~~sL~~L~i~~C~~L~~lp~~~-~~~~~L~~l~~~~~~~~ 957 (977)
.+++|++|++++ .+++.+|... ..+++|+.|+++.....
T Consensus 558 ~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 558 DLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 378999999965 5788888764 67899999988755443
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=2e-29 Score=308.45 Aligned_cols=405 Identities=18% Similarity=0.140 Sum_probs=205.4
Q ss_pred ccCccEEEeccCCCccC-CCC--CCCCCccEEEccCCCCCCCChhH---HhcCCCccEEEccCCcCCCCCCCcccCCCCC
Q 002037 419 LQNCEKLSLMDGNVTAL-PDQ--PKCPRLTTLFLQNNPFADIPNAF---FEHTREIKNLDLSSTNISSLAPSLPCLEKLR 492 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l-~~~--~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~ 492 (977)
+.++++|++++|.+... +.. .++++|++|++++|.+....... +.++++|++|++++|.+....+ +..+++|+
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~ 203 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLE 203 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCC
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCC
Confidence 44556666665554321 211 35556666666666555444433 4455556666666555543322 24555555
Q ss_pred eEecCCCCCCC-CccccCCCCccEEEccCCCCc-ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 493 SLHLENTHLND-ASLIREFGELEVLILKGSRIV-ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 493 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
+|++++|.+.. ++.++++++|++|++++|.+. .+|..++.+++|++|++++|.+...+|.. .+++|++|++++|.
T Consensus 204 ~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK 280 (768)
T ss_dssp EEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSE
T ss_pred EEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCc
Confidence 55555555544 333555555555555555554 34455555555555555555544444431 45555555555442
Q ss_pred CCccccccccCcCcccccccc-CCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcc--------cCCCCcceeee
Q 002037 571 GDWEVEETANGQNARFSEVAS-LTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDY--------WEIAPKRSMHL 641 (977)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------~~~~~~~~l~l 641 (977)
... .....+.. +++|+.|+++.+......+..++.+++|+.|++..+... ...+..+.+.+
T Consensus 281 l~~----------~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 281 FTG----------EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp EEE----------SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred cCC----------ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeC
Confidence 110 01112222 244444444444433333333334444444444433211 00122233333
Q ss_pred cccc--hhhHHHHHHHHhccceeEecCCCCcccc-cccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeec
Q 002037 642 KNLS--NSIASWVKLLLEKTEYLTLTRSSNLQDI-GEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCY 718 (977)
Q Consensus 642 ~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 718 (977)
.... ...|.++....++|+.|++.++.-...+ +.+....+++|+.|++++|.+.+..|. .+..+++|+.|+++++.
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~ 429 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNY 429 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSE
T ss_pred cCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCH-HHhcCCCCCEEECcCCc
Confidence 3222 2345555554457888888765322222 222223367788888888877665543 35677888888887773
Q ss_pred ccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEec
Q 002037 719 SLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSIL 798 (977)
Q Consensus 719 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~ 798 (977)
.....+. ....+++|+.|++.++.-...+ +.....+++|+.|++++|. +.... +..+..+++|+.|+++
T Consensus 430 l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~L~~N~-l~~~~-p~~l~~l~~L~~L~L~ 498 (768)
T 3rgz_A 430 LSGTIPS------SLGSLSKLRDLKLWLNMLEGEI---PQELMYVKTLETLILDFND-LTGEI-PSGLSNCTNLNWISLS 498 (768)
T ss_dssp EESCCCG------GGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSC-CCSCC-CGGGGGCTTCCEEECC
T ss_pred ccCcccH------HHhcCCCCCEEECCCCcccCcC---CHHHcCCCCceEEEecCCc-ccCcC-CHHHhcCCCCCEEEcc
Confidence 2222111 1123777888888776422221 2234567777888877754 33222 2335667778888877
Q ss_pred ccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEeccc
Q 002037 799 KCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCN 871 (977)
Q Consensus 799 ~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~ 871 (977)
+|.....++.... .+++|+.|+|++|.-...+ +..+..+++|+.|++++|+
T Consensus 499 ~N~l~~~~p~~~~--------------------~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 499 NNRLTGEIPKWIG--------------------RLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp SSCCCSCCCGGGG--------------------GCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSE
T ss_pred CCccCCcCChHHh--------------------cCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCc
Confidence 7765444433221 3566666666665433332 2234556666666666554
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.2e-29 Score=308.21 Aligned_cols=481 Identities=15% Similarity=0.114 Sum_probs=256.3
Q ss_pred cCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC-CCCCCcccCCCCCeEecCC
Q 002037 420 QNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~L~~ 498 (977)
.+++.|++++|.+........+++|++|++++|.+....+. +.++++|++|++++|.+. .+|..++.+++|++|++++
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 34445555554444333334455555555555554443333 445555555555555544 2333455555555555555
Q ss_pred CCCCCCccccCCCCccEEEccCCCCc-ccCccccCC-CCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 499 THLNDASLIREFGELEVLILKGSRIV-ELPNGIGTV-SNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 499 ~~l~~~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l-~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
|.+........+++|++|++++|.+. .+|..+..+ ++|++|++++|.+...+|.. ++.+++|++|++++|.....+
T Consensus 257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~i- 334 (768)
T 3rgz_A 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGEL- 334 (768)
T ss_dssp SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEEC-
T ss_pred CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcC-
Confidence 55443111114555555555555554 455544443 55555555555544444444 555555555555544211000
Q ss_pred ccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCC-CcceEEEEecCcccC---------CCCcceeeecccc-
Q 002037 577 ETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWT-NLKRFRVCVNDDYWE---------IAPKRSMHLKNLS- 645 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~---------~~~~~~l~l~~~~- 645 (977)
....+..+++|+.|+++.+......+..+..++ +|+.|++..+..... .+..+.+.+.+..
T Consensus 335 --------p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 335 --------PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp --------CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred --------CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 001244455555555554443321111122222 455555444321100 1122333332222
Q ss_pred -hhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceee
Q 002037 646 -NSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVF 724 (977)
Q Consensus 646 -~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 724 (977)
...|.++.. +++|+.|++.++. +..........+++|+.|++++|.+.+..|.. +..+++|+.|++++|......+
T Consensus 407 ~~~~p~~l~~-l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p 483 (768)
T 3rgz_A 407 TGKIPPTLSN-CSELVSLHLSFNY-LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIP 483 (768)
T ss_dssp EEECCGGGGG-CTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCC
T ss_pred ccccCHHHhc-CCCCCEEECcCCc-ccCcccHHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCceEEEecCCcccCcCC
Confidence 122333322 4678888887653 22222223456788888888888777665543 5678888888888875433322
Q ss_pred eccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccccc
Q 002037 725 CLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLME 804 (977)
Q Consensus 725 ~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 804 (977)
. ....+++|+.|+|.++.-...+ +..++.+++|+.|++++|.-...+ +..+..+++|+.|++++|....
T Consensus 484 ~------~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 484 S------GLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp G------GGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCSSCCEEEC--CGGGGGCTTCCEEECCSSEEES
T ss_pred H------HHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCCCcccCcC--CHHHcCCCCCCEEECCCCccCC
Confidence 1 1224888999999888532222 234567889999999997543343 3445788999999999987666
Q ss_pred ceeccchhhhhh-cccccc----------------------------------ccCC--------------C-CCCCcCC
Q 002037 805 EIVSVDEAEVEQ-GAAQER----------------------------------NVSS--------------A-PQPMFFP 834 (977)
Q Consensus 805 ~i~~~~~~~~~~-~~~~~~----------------------------------~l~~--------------l-~~~~~~~ 834 (977)
.+|......... ...... .+.. . +....++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 665432210000 000000 0000 0 1123467
Q ss_pred CccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccccccCcc
Q 002037 835 NLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEI 914 (977)
Q Consensus 835 ~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~ 914 (977)
+|+.|+++++.--..+ +..+.++++|+.|+++++.--..+ |..+..+++|+.|+|+++.--..+|.. +
T Consensus 633 ~L~~LdLs~N~l~g~i--p~~l~~l~~L~~L~Ls~N~l~g~i---------p~~l~~L~~L~~LdLs~N~l~g~ip~~-l 700 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYI--PKEIGSMPYLFILNLGHNDISGSI---------PDEVGDLRGLNILDLSSNKLDGRIPQA-M 700 (768)
T ss_dssp CCCEEECCSSCCBSCC--CGGGGGCTTCCEEECCSSCCCSCC---------CGGGGGCTTCCEEECCSSCCEECCCGG-G
T ss_pred cccEEECcCCcccccC--CHHHhccccCCEEeCcCCccCCCC---------ChHHhCCCCCCEEECCCCcccCcCChH-H
Confidence 8888888887533333 234778889999999888644444 556778888999999986533345443 2
Q ss_pred ccccCCCccEEEeccCCCCCCCCCC
Q 002037 915 AALRWPSLEELKVWDCPKLMKLPLD 939 (977)
Q Consensus 915 ~~~~~~sL~~L~i~~C~~L~~lp~~ 939 (977)
. .+++|++|++++++--..+|.+
T Consensus 701 ~--~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 701 S--ALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp G--GCCCCSEEECCSSEEEEECCSS
T ss_pred h--CCCCCCEEECcCCcccccCCCc
Confidence 2 3688999999887755667754
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.6e-28 Score=288.01 Aligned_cols=160 Identities=23% Similarity=0.200 Sum_probs=135.5
Q ss_pred CCCCCcccccCccEEEeccCCCccCC--CCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCC-CCccc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALP--DQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLA-PSLPC 487 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~ 487 (977)
...+|..-..+++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+..+| ..++.
T Consensus 19 l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (570)
T 2z63_A 19 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98 (570)
T ss_dssp CSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT
T ss_pred ccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcC
Confidence 44555444568999999999998876 3578999999999999999988888999999999999999999887 48999
Q ss_pred CCCCCeEecCCCCCCC-C-ccccCCCCccEEEccCCCCcc--cCccccCCCCCCEEEcCCCCCCCccChhhhhcCccc--
Q 002037 488 LEKLRSLHLENTHLND-A-SLIREFGELEVLILKGSRIVE--LPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQL-- 561 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L-- 561 (977)
+++|++|++++|.+.. + ..++.+++|++|++++|.+.. +|..++++++|++|++++|.+.. +++..++.+++|
T Consensus 99 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 99 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPL 177 (570)
T ss_dssp CTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTT
T ss_pred ccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccch
Confidence 9999999999999887 3 368999999999999999885 78999999999999999998554 444447888888
Q ss_pred --cEEEccCCcC
Q 002037 562 --EELYVGNSFG 571 (977)
Q Consensus 562 --~~L~l~~~~~ 571 (977)
+.|+++++..
T Consensus 178 ~~~~L~l~~n~l 189 (570)
T 2z63_A 178 LNLSLDLSLNPM 189 (570)
T ss_dssp CCCEEECTTCCC
T ss_pred hhhhcccCCCCc
Confidence 7888877643
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=2.9e-28 Score=291.77 Aligned_cols=493 Identities=14% Similarity=0.086 Sum_probs=276.5
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l 501 (977)
+.++..+..+..+|... .+.+++|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+
T Consensus 15 ~~~~c~~~~l~~iP~~l-~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 15 KTYNCENLGLNEIPGTL-PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TEEECTTSCCSSCCTTS-CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ceEECCCCCcccCcCCC-CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 35566666777777532 34799999999999999888899999999999999999877 56899999999999999998
Q ss_pred CC--CccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 502 ND--ASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 502 ~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
.. +..++.+++|++|++++|.++.+ |..++++++|++|++++|.+...-++. +..+++|++|+++++...
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~------ 166 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK-GFPTEKLKVLDFQNNAIH------ 166 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT-TCCCTTCCEEECCSSCCC------
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc-ccCCcccCEEEcccCccc------
Confidence 87 67899999999999999999988 567999999999999999865532233 456999999999987432
Q ss_pred ccCcCccccccccCCCCc--EEEeeecCccccccCCCCCCCCcceEEEEecCccc------CCCCcceeeecc-------
Q 002037 579 ANGQNARFSEVASLTRLT--VLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYW------EIAPKRSMHLKN------- 643 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~l~l~~------- 643 (977)
......++.+++|+ .|+++.+.....++..+. ..+|+.|++..+.... .......+.+..
T Consensus 167 ----~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~ 241 (606)
T 3t6q_A 167 ----YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241 (606)
T ss_dssp ----EECHHHHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCC
T ss_pred ----ccChhhhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhcccccc
Confidence 11234577788888 778887777666655543 3467777665432000 000000000000
Q ss_pred -cchhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccce
Q 002037 644 -LSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKE 722 (977)
Q Consensus 644 -~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 722 (977)
........+. ..+++.|++.++ .+..++.-.+..+++|+.|++++|.+... |. .+..+++|++|+++++.-. .
T Consensus 242 ~i~~~~~~~l~--~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~-~l~~l~~L~~L~l~~n~l~-~ 315 (606)
T 3t6q_A 242 DISPAVFEGLC--EMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSEL-PS-GLVGLSTLKKLVLSANKFE-N 315 (606)
T ss_dssp CCCGGGGGGGG--GSEEEEEECTTC-CCSSCCTTTTTTCTTCSEEECTTSCCSCC-CS-SCCSCTTCCEEECTTCCCS-B
T ss_pred ccChhHhchhh--cCceeEEEeecC-ccCccCHHHhccccCCCEEeccCCccCCC-Ch-hhcccccCCEEECccCCcC-c
Confidence 0000000000 014555555443 22333332334456666666666654432 22 1445556666666555221 1
Q ss_pred eeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccc-hhHHhhcCCCceEEecccc
Q 002037 723 VFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFS-RTLAEGLGNLEDLSILKCD 801 (977)
Q Consensus 723 ~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~~~~~l~~L~~L~l~~c~ 801 (977)
..+ .....+++|+.|.+.++.-...+. ......+++|+.|++++|. +..... +..+..+++|++|++++|.
T Consensus 316 ~~~-----~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~ 387 (606)
T 3t6q_A 316 LCQ-----ISASNFPSLTHLSIKGNTKRLELG--TGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSYNE 387 (606)
T ss_dssp GGG-----GCGGGCTTCSEEECCSCSSCCBCC--SSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCSCS
T ss_pred Cch-----hhhhccCcCCEEECCCCCcccccc--hhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCCCc
Confidence 110 001125555555555543221111 1113345555555555532 222210 1223445555555555543
Q ss_pred cccceeccchh-hhhhccccc-cccCCCC---CCCcCCCccEEEeccccCcceecccccccccccccEEEEeccccccee
Q 002037 802 LMEEIVSVDEA-EVEQGAAQE-RNVSSAP---QPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERI 876 (977)
Q Consensus 802 ~l~~i~~~~~~-~~~~~~~~~-~~l~~l~---~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l 876 (977)
.....+..... .......+. ..+.... ....+++|+.|++++|.- ... +...+..+++|++|++++|.--...
T Consensus 388 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~ 465 (606)
T 3t6q_A 388 PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL-DIS-SEQLFDGLPALQHLNLQGNHFPKGN 465 (606)
T ss_dssp CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC-BTT-CTTTTTTCTTCCEEECTTCBCGGGE
T ss_pred CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc-CCc-CHHHHhCCCCCCEEECCCCCCCccc
Confidence 21111100000 000000000 0000000 012467777777777643 222 2234566777777777777532211
Q ss_pred eecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCCCCCCccccccccchh
Q 002037 877 ITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLDTRSAPKLETFKAHSA 954 (977)
Q Consensus 877 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~~~~~~~L~~l~~~~~ 954 (977)
+.. +..+..+++|+.|++++|. ++.++...+. .+++|++|++++|.--...|..+..+++| .|+++..
T Consensus 466 ~~~------~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 466 IQK------TNSLQTLGRLEILVLSFCD-LSSIDQHAFT--SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN 533 (606)
T ss_dssp ECS------SCGGGGCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS
T ss_pred ccc------chhhccCCCccEEECCCCc-cCccChhhhc--cccCCCEEECCCCccCcCChhHhCccccc-EEECcCC
Confidence 110 2335667778888887763 5555443332 36778888887764333345566667777 6665433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.8e-28 Score=287.82 Aligned_cols=465 Identities=19% Similarity=0.190 Sum_probs=283.9
Q ss_pred EEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCC
Q 002037 424 KLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLN 502 (977)
Q Consensus 424 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~ 502 (977)
.++-++..+..+|.. -.++++.|++++|.+..++...|.++++|++|++++|.+..+++ .++.+++|++|++++|.+.
T Consensus 11 ~~~c~~~~l~~ip~~-l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~ 89 (570)
T 2z63_A 11 TYQCMELNFYKIPDN-LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (570)
T ss_dssp EEECCSSCCSSCCSS-SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEEeCCCCccccCCC-ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC
Confidence 344445566677752 23679999999999999888888999999999999999998865 7899999999999999988
Q ss_pred C--CccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCC-ccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 503 D--ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQ-VIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 503 ~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
. +..++.+++|++|++++|++..+|. .++++++|++|++++|.+.. .+|.. ++++++|++|+++++....
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~----- 163 (570)
T 2z63_A 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS----- 163 (570)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCE-----
T ss_pred ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccce-----
Confidence 7 5789999999999999999999886 59999999999999998665 46777 8999999999999874321
Q ss_pred ccCcCccccccccCCCC----cEEEeeecCccccccCCCCCCCCcceEEEEecCcccCC--------CCcc---------
Q 002037 579 ANGQNARFSEVASLTRL----TVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEI--------APKR--------- 637 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------~~~~--------- 637 (977)
.....++.+++| ..++++.+.....+...+... +|+.|++..+...... ....
T Consensus 164 -----~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~ 237 (570)
T 2z63_A 164 -----IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237 (570)
T ss_dssp -----ECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEEC
T ss_pred -----ecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccc
Confidence 112345555555 788888877766666555444 6788877664211000 0000
Q ss_pred -----------------------eeeeccc---chhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeecc
Q 002037 638 -----------------------SMHLKNL---SNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRA 691 (977)
Q Consensus 638 -----------------------~l~l~~~---~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~ 691 (977)
.+.+... ....+.++. .+++|+.|++.++. +..++.. ...+ +|+.|++++
T Consensus 238 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~-l~~l~~~-~~~~-~L~~L~l~~ 313 (570)
T 2z63_A 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN-CLTNVSSFSLVSVT-IERVKDF-SYNF-GWQHLELVN 313 (570)
T ss_dssp CCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTG-GGTTCSEEEEESCE-ECSCCBC-CSCC-CCSEEEEES
T ss_pred cCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhc-CcCcccEEEecCcc-chhhhhh-hccC-CccEEeecc
Confidence 0000000 000011111 12334444443321 1111111 1112 444444444
Q ss_pred ccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEE
Q 002037 692 CSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKV 771 (977)
Q Consensus 692 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l 771 (977)
|.+... |. ..+++|+.|++.++...... .. ..+++|+.|+++++. ++.+.........+++|+.|++
T Consensus 314 n~~~~l-~~---~~l~~L~~L~l~~n~~~~~~-~~-------~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l 380 (570)
T 2z63_A 314 CKFGQF-PT---LKLKSLKRLTFTSNKGGNAF-SE-------VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDL 380 (570)
T ss_dssp CBCSSC-CB---CBCSSCCEEEEESCBSCCBC-CC-------CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEEC
T ss_pred Cccccc-Cc---ccccccCEEeCcCCcccccc-cc-------ccCCCCCEEeCcCCc-cCccccccccccccCccCEEEC
Confidence 433311 11 23444444444444221111 10 124555555555442 2221111122234455555555
Q ss_pred eecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceec
Q 002037 772 KDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVL 851 (977)
Q Consensus 772 ~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~ 851 (977)
++| .+..+++. +..+++|++|++++|......+ ......+++|+.|++++|.-. ..
T Consensus 381 ~~n-~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-------------------~~~~~~l~~L~~L~l~~n~l~-~~- 436 (570)
T 2z63_A 381 SFN-GVITMSSN--FLGLEQLEHLDFQHSNLKQMSE-------------------FSVFLSLRNLIYLDISHTHTR-VA- 436 (570)
T ss_dssp CSC-SEEEEEEE--EETCTTCCEEECTTSEEESCTT-------------------SCTTTTCTTCCEEECTTSCCE-EC-
T ss_pred CCC-cccccccc--ccccCCCCEEEccCCccccccc-------------------hhhhhcCCCCCEEeCcCCccc-cc-
Confidence 553 23333221 3445555555555543211110 011235789999999998543 32
Q ss_pred ccccccccccccEEEEeccccc-ceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccC
Q 002037 852 SLTNAHNLKQLEELTVASCNHM-ERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDC 930 (977)
Q Consensus 852 ~~~~~~~l~~L~~L~i~~C~~l-~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C 930 (977)
....+..+++|++|++++|.-. ..+ +..+..+++|+.|++++|. ++.+....+. .+++|++|++++|
T Consensus 437 ~~~~~~~l~~L~~L~l~~n~l~~~~~---------p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~--~l~~L~~L~l~~n 504 (570)
T 2z63_A 437 FNGIFNGLSSLEVLKMAGNSFQENFL---------PDIFTELRNLTFLDLSQCQ-LEQLSPTAFN--SLSSLQVLNMASN 504 (570)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEE---------CSCCTTCTTCCEEECTTSC-CCEECTTTTT--TCTTCCEEECCSS
T ss_pred chhhhhcCCcCcEEECcCCcCccccc---------hhhhhcccCCCEEECCCCc-cccCChhhhh--cccCCCEEeCCCC
Confidence 2345678899999999999643 123 4557789999999999975 6666443333 3799999999987
Q ss_pred CCCCCCCC-CCCCCccccccccchhh
Q 002037 931 PKLMKLPL-DTRSAPKLETFKAHSAW 955 (977)
Q Consensus 931 ~~L~~lp~-~~~~~~~L~~l~~~~~~ 955 (977)
+++.+|. .+..+++|+.++++...
T Consensus 505 -~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 505 -QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp -CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -cCCCCCHHHhhcccCCcEEEecCCc
Confidence 5777664 56789999999865433
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=5.1e-28 Score=286.05 Aligned_cols=463 Identities=17% Similarity=0.190 Sum_probs=298.2
Q ss_pred CCCCcccccCccEEEeccCCCccCC--CCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cccC
Q 002037 412 KGWPREDLQNCEKLSLMDGNVTALP--DQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPCL 488 (977)
Q Consensus 412 ~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l 488 (977)
..+|..-..++++|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+..+++. ++.+
T Consensus 18 ~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 18 TSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp SSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred ccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 3444433467777888877776653 246777788888888877777766677778888888888877777664 7777
Q ss_pred CCCCeEecCCCCCCC---CccccCCCCccEEEccCCC-CcccC-ccccCCCCCCEEEcCCCCCCCccChhhhhcCccccE
Q 002037 489 EKLRSLHLENTHLND---ASLIREFGELEVLILKGSR-IVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEE 563 (977)
Q Consensus 489 ~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~ 563 (977)
++|++|++++|.+.. +..++++++|++|++++|. +..+| ..++.+++|++|++++|.+....|.. ++.+++|++
T Consensus 98 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~ 176 (549)
T 2z81_A 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHH 176 (549)
T ss_dssp TTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEE
T ss_pred CCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCce
Confidence 888888888877664 4567777788888887776 56666 35777778888888877766656655 777777888
Q ss_pred EEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcccc---ccCCCCCCCCcceEEEEecCcccCCCCcceee
Q 002037 564 LYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVL---SVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMH 640 (977)
Q Consensus 564 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 640 (977)
|+++++..... ....+..+++|+.|+++.+..... +......+++|+.|++..+..
T Consensus 177 L~l~~n~~~~~----------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l----------- 235 (549)
T 2z81_A 177 LTLHLSESAFL----------LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL----------- 235 (549)
T ss_dssp EEEECSBSTTH----------HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEE-----------
T ss_pred EecccCccccc----------chhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccccc-----------
Confidence 77766532110 001124567788888877665443 222334466777777765421
Q ss_pred ecccchhhHHHHHH---HHhccceeEecCCCC--ccccc---ccccCCCCCccEEeeccccccccccCC----ccccccc
Q 002037 641 LKNLSNSIASWVKL---LLEKTEYLTLTRSSN--LQDIG---EIDVQGFTGLMCMHLRACSMQRIFHSN----FYPTVQI 708 (977)
Q Consensus 641 l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~--~~~~~---~l~~~~l~~L~~L~L~~~~~~~~~~~~----~~~~l~~ 708 (977)
....+..+.. .+++++.+.+.+|.. +..+. .-....+++|+.|.+.++.+....... ....+++
T Consensus 236 ----~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~ 311 (549)
T 2z81_A 236 ----TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEK 311 (549)
T ss_dssp ----EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTT
T ss_pred ----chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhccc
Confidence 1122223322 245778888876642 11111 112346788999999888554432211 1234578
Q ss_pred ceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccc-hhHHh
Q 002037 709 LEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFS-RTLAE 787 (977)
Q Consensus 709 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~~~~ 787 (977)
|+.|+++++. +..++..- ...+++|+.|+++++.-...++......+.+++|+.|++++| +++.++. ...+.
T Consensus 312 L~~L~l~~n~-l~~ip~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 384 (549)
T 2z81_A 312 VKRITVENSK-VFLVPCSF-----SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILL 384 (549)
T ss_dssp CCEEEEESSC-CCCCCHHH-----HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGG
T ss_pred ceEEEeccCc-cccCCHHH-----HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhh
Confidence 9999998874 33332210 013889999999988532221111223467899999999995 5666532 23467
Q ss_pred hcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEE
Q 002037 788 GLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTV 867 (977)
Q Consensus 788 ~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i 867 (977)
.+++|++|++++|. ++.++... ..+++|+.|++++|. ++.+... -.++|++|++
T Consensus 385 ~l~~L~~L~Ls~N~-l~~lp~~~--------------------~~~~~L~~L~Ls~N~-l~~l~~~----~~~~L~~L~L 438 (549)
T 2z81_A 385 TLKNLTSLDISRNT-FHPMPDSC--------------------QWPEKMRFLNLSSTG-IRVVKTC----IPQTLEVLDV 438 (549)
T ss_dssp GCTTCCEEECTTCC-CCCCCSCC--------------------CCCTTCCEEECTTSC-CSCCCTT----SCTTCSEEEC
T ss_pred cCCCCCEEECCCCC-CccCChhh--------------------cccccccEEECCCCC-cccccch----hcCCceEEEC
Confidence 88999999999984 44443321 247889999998875 4443211 1268999999
Q ss_pred ecccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCC-CCCCccc
Q 002037 868 ASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLD-TRSAPKL 946 (977)
Q Consensus 868 ~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~-~~~~~~L 946 (977)
++|. ++.+ ...+++|++|+++++ +++.++... .+++|++|++++| +++.+|.. +..+++|
T Consensus 439 s~N~-l~~~------------~~~l~~L~~L~Ls~N-~l~~ip~~~----~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 499 (549)
T 2z81_A 439 SNNN-LDSF------------SLFLPRLQELYISRN-KLKTLPDAS----LFPVLLVMKISRN-QLKSVPDGIFDRLTSL 499 (549)
T ss_dssp CSSC-CSCC------------CCCCTTCCEEECCSS-CCSSCCCGG----GCTTCCEEECCSS-CCCCCCTTGGGGCTTC
T ss_pred CCCC-hhhh------------cccCChhcEEECCCC-ccCcCCCcc----cCccCCEEecCCC-ccCCcCHHHHhcCccc
Confidence 9884 3332 246789999999986 577777631 3689999999886 57776544 6778888
Q ss_pred cccccc
Q 002037 947 ETFKAH 952 (977)
Q Consensus 947 ~~l~~~ 952 (977)
+.++++
T Consensus 500 ~~L~l~ 505 (549)
T 2z81_A 500 QKIWLH 505 (549)
T ss_dssp CEEECC
T ss_pred CEEEec
Confidence 888754
No 15
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.6e-27 Score=290.70 Aligned_cols=482 Identities=17% Similarity=0.153 Sum_probs=287.8
Q ss_pred CcCCCCCcccccCccEEEeccCCCccCC--CCCCCCCccEEEccCCC-CCCCChhHHhcCCCccEEEccCCcCCCC-CCC
Q 002037 409 GMKKGWPREDLQNCEKLSLMDGNVTALP--DQPKCPRLTTLFLQNNP-FADIPNAFFEHTREIKNLDLSSTNISSL-APS 484 (977)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~ 484 (977)
.....+|. ..++++.|++++|.+..++ .+.++++|++|++++|. ...+++..|.++++|++|++++|.+..+ |..
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 33455555 5677888888888887653 35678888888888884 4455566778888888888888888876 568
Q ss_pred cccCCCCCeEecCCCCCCC--Ccc--ccCCCCccEEEccCCCCcccC--ccccCCCCCCEEEcCCCCCCCccChhhhhcC
Q 002037 485 LPCLEKLRSLHLENTHLND--ASL--IREFGELEVLILKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVIPPNVISKL 558 (977)
Q Consensus 485 ~~~l~~L~~L~L~~~~l~~--~~~--i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L 558 (977)
++.+++|++|+|++|.+.. +.. ++++++|++|++++|.+..++ ..++++++|++|++++|.+....|.. ++.+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l 171 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPL 171 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccc
Confidence 8888888888888888775 443 788888888888888887653 45888888888888888766666655 6666
Q ss_pred --ccccEEEccCCcCCccccccccCcCccccccccCC------CCcEEEeeecCcccccc-CCCC--CCCCcceEEEEec
Q 002037 559 --SQLEELYVGNSFGDWEVEETANGQNARFSEVASLT------RLTVLYIHVSNTKVLSV-DFDG--PWTNLKRFRVCVN 627 (977)
Q Consensus 559 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~~~~~-~~~~--~~~~L~~L~l~~~ 627 (977)
++|+.|+++++..... ....+..+. .|+.|+++.+....... .+.. ....+..+.+..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~----------~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSR----------VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp HHCSSCCCEECCSBSCCC----------CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred cCCccceEECCCCccccc----------cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 7888888877643211 112222222 48888888765432221 1111 1234555554321
Q ss_pred CcccCCCCcceeeecccchhhHHHHHHH-HhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCccccc
Q 002037 628 DDYWEIAPKRSMHLKNLSNSIASWVKLL-LEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTV 706 (977)
Q Consensus 628 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 706 (977)
..... .....+... ....+... .++++.|++.++. +..+.......+++|+.|++++|.+....+ ..+..+
T Consensus 242 ~~~~~---~~~~~l~~~---~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l 313 (844)
T 3j0a_A 242 IMGAG---FGFHNIKDP---DQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIAD-EAFYGL 313 (844)
T ss_dssp CCBCS---SSCSSSTTG---GGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECT-TTTTTC
T ss_pred ccccc---ccccccCCC---ChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCCh-HHhcCC
Confidence 10000 000000000 00111111 2678899997753 334434445678999999999998877654 446788
Q ss_pred ccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHH
Q 002037 707 QILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLA 786 (977)
Q Consensus 707 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~ 786 (977)
++|+.|+++++.- ..+.+ .....+++|+.|++.++ .++.+. ...+..+++|+.|+++++ .++.++
T Consensus 314 ~~L~~L~Ls~N~l-~~~~~-----~~~~~l~~L~~L~L~~N-~i~~~~--~~~~~~l~~L~~L~Ls~N-~l~~i~----- 378 (844)
T 3j0a_A 314 DNLQVLNLSYNLL-GELYS-----SNFYGLPKVAYIDLQKN-HIAIIQ--DQTFKFLEKLQTLDLRDN-ALTTIH----- 378 (844)
T ss_dssp SSCCEEEEESCCC-SCCCS-----CSCSSCTTCCEEECCSC-CCCCCC--SSCSCSCCCCCEEEEETC-CSCCCS-----
T ss_pred CCCCEEECCCCCC-CccCH-----HHhcCCCCCCEEECCCC-CCCccC--hhhhcCCCCCCEEECCCC-CCCccc-----
Confidence 9999999998843 22211 11124889999999987 454432 223567899999999985 566552
Q ss_pred hhcCCCceEEecccccccceeccchhhhhhcccc-ccccCCCCC---CCcCCCccEEEeccccCcceecccccccccccc
Q 002037 787 EGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQ-ERNVSSAPQ---PMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQL 862 (977)
Q Consensus 787 ~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~-~~~l~~l~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L 862 (977)
.+++|+.|.++++.. ..++..... .....+ ...+..++. ...+++|+.|+|+++. +....+......+++|
T Consensus 379 -~~~~L~~L~l~~N~l-~~l~~~~~~--l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L 453 (844)
T 3j0a_A 379 -FIPSIPDIFLSGNKL-VTLPKINLT--ANLIHLSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSL 453 (844)
T ss_dssp -SCCSCSEEEEESCCC-CCCCCCCTT--CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTC
T ss_pred -CCCCcchhccCCCCc-ccccccccc--cceeecccCccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCcc
Confidence 378899999888753 333322110 000000 011222221 1257888888888764 3333222234456777
Q ss_pred cEEEEecccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCC
Q 002037 863 EELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPL 938 (977)
Q Consensus 863 ~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~ 938 (977)
+.|+++++.- +.+.. ....+..+..+++|+.|+|+++ +++.++...+. .+++|++|+++++ +++.+|.
T Consensus 454 ~~L~Ls~N~l-~~~~~---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~--~l~~L~~L~Ls~N-~l~~l~~ 521 (844)
T 3j0a_A 454 EQLFLGENML-QLAWE---TELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFS--HLTALRGLSLNSN-RLTVLSH 521 (844)
T ss_dssp CBCEEESCCC-SSSCC---SCCCSSCSSCBCCEECCCCCHH-HHTTCCTTSSS--SCCSCSEEEEESC-CCSSCCC
T ss_pred ccccCCCCcc-ccccc---cccchhhhcCcccccEEECCCC-cccccChhHcc--chhhhheeECCCC-CCCccCh
Confidence 7777777642 11100 0001122344566666666664 45555544332 2456666666553 4555543
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=1.4e-27 Score=282.23 Aligned_cols=445 Identities=14% Similarity=0.123 Sum_probs=316.2
Q ss_pred ccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCC--CCCCcccCCCCCeE
Q 002037 419 LQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISS--LAPSLPCLEKLRSL 494 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L 494 (977)
++++++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.+.. .|..++.+++|++|
T Consensus 49 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 128 (549)
T 2z81_A 49 CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128 (549)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEE
Confidence 7889999999999988764 5789999999999999999999989999999999999999985 46789999999999
Q ss_pred ecCCCC-CCC--CccccCCCCccEEEccCCCCcc-cCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 495 HLENTH-LND--ASLIREFGELEVLILKGSRIVE-LPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 495 ~L~~~~-l~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
++++|. +.. +..++.+++|++|++++|.+.. .|..++.+++|++|++++|. ...+|...++.+++|++|+++++.
T Consensus 129 ~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCB
T ss_pred ECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCc
Confidence 999998 444 3679999999999999999985 68889999999999999997 456777656789999999998874
Q ss_pred CCccccccccCcCccccccccCCCCcEEEeeecCccccc----cCCCCCCCCcceEEEEecCcccCCCCcceeeecccch
Q 002037 571 GDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLS----VDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSN 646 (977)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~ 646 (977)
..... .........+++|+.|++..+...... ......+++|+.+++..+....... .........
T Consensus 208 l~~~~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~~-- 277 (549)
T 2z81_A 208 LARFQ-------FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD-FNPSESDVV-- 277 (549)
T ss_dssp CTTCC-------CCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSC-CCCCTTTCC--
T ss_pred ccccc-------ccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccc-ccccchhhh--
Confidence 32110 001112245678999999877543221 1223457789999988764221100 000000000
Q ss_pred hhHHHHHHHHhccceeEecCCCCcccccccc----cCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccce
Q 002037 647 SIASWVKLLLEKTEYLTLTRSSNLQDIGEID----VQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKE 722 (977)
Q Consensus 647 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~----~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~ 722 (977)
..+++++.|.+.++.--....... ...+++|+.|++++|.+. .+|..++..+++|+.|+++++.-...
T Consensus 278 -------~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~ 349 (549)
T 2z81_A 278 -------SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEE 349 (549)
T ss_dssp -------CCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHH
T ss_pred -------hhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccc
Confidence 013567777776543211111101 123578999999999765 44555557799999999999854332
Q ss_pred eeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccc
Q 002037 723 VFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDL 802 (977)
Q Consensus 723 ~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 802 (977)
.+... .....+++|+.|+++++ .++.+.........+++|+.|++++| +++.++. .+..+++|++|++++|.
T Consensus 350 ~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~--~~~~~~~L~~L~Ls~N~- 421 (549)
T 2z81_A 350 YLKNS---ACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPD--SCQWPEKMRFLNLSSTG- 421 (549)
T ss_dssp HHHHH---TCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCS--CCCCCTTCCEEECTTSC-
T ss_pred cccch---hhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCccCCh--hhcccccccEEECCCCC-
Confidence 21100 00124899999999997 44443211123567899999999996 7777633 34678999999999986
Q ss_pred ccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccc
Q 002037 803 MEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDE 882 (977)
Q Consensus 803 l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~ 882 (977)
+..++. ..+++|+.|++++| +++.+ ...+++|++|++++| .++.++
T Consensus 422 l~~l~~----------------------~~~~~L~~L~Ls~N-~l~~~-----~~~l~~L~~L~Ls~N-~l~~ip----- 467 (549)
T 2z81_A 422 IRVVKT----------------------CIPQTLEVLDVSNN-NLDSF-----SLFLPRLQELYISRN-KLKTLP----- 467 (549)
T ss_dssp CSCCCT----------------------TSCTTCSEEECCSS-CCSCC-----CCCCTTCCEEECCSS-CCSSCC-----
T ss_pred cccccc----------------------hhcCCceEEECCCC-Chhhh-----cccCChhcEEECCCC-ccCcCC-----
Confidence 333321 12479999999998 45443 257899999999999 455552
Q ss_pred cccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCC
Q 002037 883 EKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPK 932 (977)
Q Consensus 883 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 932 (977)
. ...+++|+.|+++++ +++.++...+.. +++|++|++.++|-
T Consensus 468 ----~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~l~~N~~ 509 (549)
T 2z81_A 468 ----D-ASLFPVLLVMKISRN-QLKSVPDGIFDR--LTSLQKIWLHTNPW 509 (549)
T ss_dssp ----C-GGGCTTCCEEECCSS-CCCCCCTTGGGG--CTTCCEEECCSSCB
T ss_pred ----C-cccCccCCEEecCCC-ccCCcCHHHHhc--CcccCEEEecCCCc
Confidence 2 346899999999996 588777654443 79999999999883
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=7.6e-27 Score=283.33 Aligned_cols=494 Identities=19% Similarity=0.188 Sum_probs=299.1
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l 501 (977)
+.++.+++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.+..+++ .++.+++|++|++++|.+
T Consensus 7 ~~~~cs~~~L~~ip~~~-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDL-PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp SEEECCSSCCSSCCSCS-CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred CeeECCCCCcccccccc-CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence 35667777788887643 3799999999999999999889999999999999999998754 789999999999999999
Q ss_pred CC-C-ccccCCCCccEEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 502 ND-A-SLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 502 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
.. + ..++++++|++|++++|.+..+| ..++++++|++|++++|.+....|.. ++.+++|++|+++++.....
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~---- 160 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQAL---- 160 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCB----
T ss_pred CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCccccc----
Confidence 88 4 36999999999999999999887 46999999999999999876655554 88999999999988742111
Q ss_pred ccCcCccccc--cccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHH--
Q 002037 579 ANGQNARFSE--VASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKL-- 654 (977)
Q Consensus 579 ~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~-- 654 (977)
.... ...+++|+.|+++.+.....+...+..+.+|+.+.+..+... ......+..
T Consensus 161 ------~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~---------------~~~~~~~~~~l 219 (680)
T 1ziw_A 161 ------KSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLG---------------PSLTEKLCLEL 219 (680)
T ss_dssp ------CHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCH---------------HHHHHHHHHHH
T ss_pred ------CHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccC---------------hhhHHHHHHHh
Confidence 1122 234578999999988877776666666777777765432110 011111111
Q ss_pred HHhccceeEecCCCCcccccccccCCC--CCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccc
Q 002037 655 LLEKTEYLTLTRSSNLQDIGEIDVQGF--TGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGE 732 (977)
Q Consensus 655 ~~~~L~~L~l~~~~~~~~~~~l~~~~l--~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 732 (977)
..++|+.|++.++. +.........++ ++|+.|++++|.+....+ ..+..+++|+.|+++++.- ....+ ..
T Consensus 220 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l-~~~~~-----~~ 291 (680)
T 1ziw_A 220 ANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNI-QHLFS-----HS 291 (680)
T ss_dssp TTSCCCEEECTTSC-CCEECTTTTGGGGGSCCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSCCB-SEECT-----TT
T ss_pred hhccccEEEccCCc-ccccChhHhhccCcCCCCEEECCCCCcCccCc-ccccCcccccEeeCCCCcc-CccCh-----hh
Confidence 12567777776643 222222222233 348888888886665443 3456778888888877632 22211 01
Q ss_pred cccccccceeeccCccCcc-----eee-ecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccc-ccc
Q 002037 733 QAGLKRLRELVLVGLPKVL-----TIW-KGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDL-MEE 805 (977)
Q Consensus 733 ~~~~~~L~~L~L~~~~~L~-----~i~-~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~-l~~ 805 (977)
...+++|+.|.+.++..-. .++ .....+..+++|+.|++++| .+..++ +..+.++++|++|++++|.. +..
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIK-SNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCC-TTTTTTCTTCCEEECTTCBSCCCE
T ss_pred hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCC-hhHhccccCCcEEECCCCchhhhh
Confidence 1236777777776542111 110 01123456777777777774 444442 23345677777777776642 121
Q ss_pred eeccchhhhh----hccccc-cccCCCC--CCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeee
Q 002037 806 IVSVDEAEVE----QGAAQE-RNVSSAP--QPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIIT 878 (977)
Q Consensus 806 i~~~~~~~~~----~~~~~~-~~l~~l~--~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~ 878 (977)
++........ ....+. ..+..+. ....+++|+.|+++++.-...+ +...+..+++|++|++++|.- ..+..
T Consensus 370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~ 447 (680)
T 1ziw_A 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL-TGQEWRGLENIFEIYLSYNKY-LQLTR 447 (680)
T ss_dssp ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC-CSGGGTTCTTCCEEECCSCSE-EECCT
T ss_pred cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc-CcccccCcccccEEecCCCCc-ceeCh
Confidence 1111000000 000000 0111111 1234677777777776533332 223456677777777776641 11100
Q ss_pred --------------c----ccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCC--
Q 002037 879 --------------V----SDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPL-- 938 (977)
Q Consensus 879 --------------~----~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~-- 938 (977)
. ......+..+..+++|+.|+++++ +++.++...+. .+++|++|+++++. +..++.
T Consensus 448 ~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~--~l~~L~~L~Ls~N~-l~~~~~~~ 523 (680)
T 1ziw_A 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLE--GLEKLEILDLQHNN-LARLWKHA 523 (680)
T ss_dssp TTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCSSC-CGGGGSTT
T ss_pred hhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhhc--cccccCEEeCCCCC-ccccchhh
Confidence 0 000111333455666666766664 35555543332 25677777776643 444321
Q ss_pred -------CCCCCccccccccchhhhhhc
Q 002037 939 -------DTRSAPKLETFKAHSAWFEKL 959 (977)
Q Consensus 939 -------~~~~~~~L~~l~~~~~~~~~l 959 (977)
.+..+++|+.|+++..-...+
T Consensus 524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i 551 (680)
T 1ziw_A 524 NPGGPIYFLKGLSHLHILNLESNGFDEI 551 (680)
T ss_dssp STTSCCCTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCCcchhhcCCCCCCEEECCCCCCCCC
Confidence 145566777776665444433
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.8e-26 Score=267.81 Aligned_cols=457 Identities=15% Similarity=0.107 Sum_probs=292.3
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l 501 (977)
+.++++++.+..+|.... ++|+.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 578899999998887443 8999999999999999988899999999999999999987 56899999999999999999
Q ss_pred CCCccccCCCCccEEEccCCCCcc--cCccccCCCCCCEEEcCCCCCCCccChhhhhcCccc--cEEEccCCcCCccccc
Q 002037 502 NDASLIREFGELEVLILKGSRIVE--LPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQL--EELYVGNSFGDWEVEE 577 (977)
Q Consensus 502 ~~~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L--~~L~l~~~~~~~~~~~ 577 (977)
...+.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.. .. ++.+++| ++|+++++....
T Consensus 82 ~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l~~---- 152 (520)
T 2z7x_B 82 VKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGETYG---- 152 (520)
T ss_dssp CEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTTTT----
T ss_pred eecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeecccccc----
Confidence 883333 89999999999999986 57889999999999999998544 22 6778888 999998764300
Q ss_pred cccCcCccccccccCCCCcEEEe--eecCc-cccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHH-
Q 002037 578 TANGQNARFSEVASLTRLTVLYI--HVSNT-KVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVK- 653 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l--~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~- 653 (977)
.......+..+.. +.+.+ ..+.. ...+...+..+++|+.+++..+..... . ......+.
T Consensus 153 ----~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------~-~~~~~~~~~ 215 (520)
T 2z7x_B 153 ----EKEDPEGLQDFNT-ESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK-----------C-SYFLSILAK 215 (520)
T ss_dssp ----SSCCTTTTTTCCE-EEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT-----------T-HHHHHHHHG
T ss_pred ----ccccccccccccc-ceEEEEeccCcchhhhhhhhhhcccceeeccccccccccc-----------c-ceeecchhh
Confidence 1112233333332 23333 33322 223334455677777777776531000 0 00111111
Q ss_pred -HHHhccceeEecCCCCcccc--cccccCCCCCccEEeeccccccccccCCcc----cccccceEEEEEeecccceeeec
Q 002037 654 -LLLEKTEYLTLTRSSNLQDI--GEIDVQGFTGLMCMHLRACSMQRIFHSNFY----PTVQILEELHVEYCYSLKEVFCL 726 (977)
Q Consensus 654 -~~~~~L~~L~l~~~~~~~~~--~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~l~~~~~~ 726 (977)
..+++|+.|.+.++.-.... ........++|+.|++++|.+.+..|..++ ..+++|+.++++++.. .++.
T Consensus 216 l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~- 292 (520)
T 2z7x_B 216 LQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQ- 292 (520)
T ss_dssp GGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCT-
T ss_pred hccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecch-
Confidence 11345666666443211000 000011245788888888877766665543 6778888888877643 1110
Q ss_pred cccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccce
Q 002037 727 EDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEI 806 (977)
Q Consensus 727 ~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i 806 (977)
..+. ....-++|+.|.+.++. +..+ .....+++|+.|++++| ++....+ ..+..+++|++|++++|..- .+
T Consensus 293 ~~~~-~~~~~~~L~~L~l~~n~-l~~~----~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~l~-~l 363 (520)
T 2z7x_B 293 SYIY-EIFSNMNIKNFTVSGTR-MVHM----LCPSKISPFLHLDFSNN-LLTDTVF-ENCGHLTELETLILQMNQLK-EL 363 (520)
T ss_dssp HHHH-HHHHTCCCSEEEEESSC-CCCC----CCCSSCCCCCEEECCSS-CCCTTTT-TTCCCCSSCCEEECCSSCCC-BH
T ss_pred hhhh-cccccCceeEEEcCCCc-cccc----cchhhCCcccEEEeECC-ccChhhh-hhhccCCCCCEEEccCCccC-cc
Confidence 0000 00001458888888774 2221 11146788888888886 3444322 33467888888888887532 21
Q ss_pred eccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccc
Q 002037 807 VSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAA 886 (977)
Q Consensus 807 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~ 886 (977)
+.... ....+++|+.|++++|.-...+ +...+..+++|++|++++|.--..+ +
T Consensus 364 ~~~~~-----------------~~~~l~~L~~L~Ls~N~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~---------~ 416 (520)
T 2z7x_B 364 SKIAE-----------------MTTQMKSLQQLDISQNSVSYDE-KKGDCSWTKSLLSLNMSSNILTDTI---------F 416 (520)
T ss_dssp HHHHH-----------------HHTTCTTCCEEECCSSCCBCCG-GGCSCCCCTTCCEEECCSSCCCGGG---------G
T ss_pred ccchH-----------------HHhhCCCCCEEECCCCcCCccc-ccchhccCccCCEEECcCCCCCcch---------h
Confidence 11000 0014788888888887543323 3334567788888888888532221 1
Q ss_pred cccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCC-CCCCccccccccc
Q 002037 887 ENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLD-TRSAPKLETFKAH 952 (977)
Q Consensus 887 ~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~~~ 952 (977)
.. ..++|+.|++++| +++.++.... .+++|++|++++| +++.+|.. +..+++|+.++++
T Consensus 417 ~~--l~~~L~~L~Ls~N-~l~~ip~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~ 476 (520)
T 2z7x_B 417 RC--LPPRIKVLDLHSN-KIKSIPKQVV---KLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLH 476 (520)
T ss_dssp GS--CCTTCCEEECCSS-CCCCCCGGGG---GCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred hh--hcccCCEEECCCC-cccccchhhh---cCCCCCEEECCCC-cCCccCHHHhccCCcccEEECc
Confidence 11 1268888998886 5777776543 3688999999886 67788876 6778888888654
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=1.9e-25 Score=276.30 Aligned_cols=458 Identities=15% Similarity=0.148 Sum_probs=317.5
Q ss_pred ccCccEEEeccCC-CccCC--CCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCC-CCCC--cccCCCCC
Q 002037 419 LQNCEKLSLMDGN-VTALP--DQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISS-LAPS--LPCLEKLR 492 (977)
Q Consensus 419 ~~~~~~l~l~~~~-~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~--~~~l~~L~ 492 (977)
+.+++.|++++|. +..++ .+.++++|++|++++|.+..+.+..|.++++|++|++++|.+.. .|.. ++.+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 7889999999884 44442 35789999999999999998888888999999999999999986 4554 89999999
Q ss_pred eEecCCCCCCC---CccccCCCCccEEEccCCCCccc-CccccCC--CCCCEEEcCCCCCCCccChhhhhcCcc------
Q 002037 493 SLHLENTHLND---ASLIREFGELEVLILKGSRIVEL-PNGIGTV--SNLKLLDLSNNLFLQVIPPNVISKLSQ------ 560 (977)
Q Consensus 493 ~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l--~~L~~L~l~~~~~~~~~p~~~i~~L~~------ 560 (977)
+|+|++|.+.. +..++++++|++|++++|.+..+ |..+..+ ++|+.|++++|.+....|.. ++.+.+
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~-~~~~~~~~~~~~ 205 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD-WGKCMNPFRNMV 205 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCC-CCSSSCTTTTCC
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccc-hhhcCCccccCc
Confidence 99999999877 25799999999999999998754 5567777 89999999999987777765 566555
Q ss_pred ccEEEccCCcCCcccccccc--------------------------CcCcccccccc--CCCCcEEEeeecCccccccCC
Q 002037 561 LEELYVGNSFGDWEVEETAN--------------------------GQNARFSEVAS--LTRLTVLYIHVSNTKVLSVDF 612 (977)
Q Consensus 561 L~~L~l~~~~~~~~~~~~~~--------------------------~~~~~~~~l~~--l~~L~~L~l~~~~~~~~~~~~ 612 (977)
|++|+++++........... ........+.. .++|+.|+++.+.........
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 99999988743211110000 00001111222 267899999888877777777
Q ss_pred CCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccc
Q 002037 613 DGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRAC 692 (977)
Q Consensus 613 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~ 692 (977)
+..+++|+.|++..+......+ ..+ ..+++|+.|++.++ .+..+.......+++|+.|++++|
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~---------------~~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIAD---------------EAF-YGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECT---------------TTT-TTCSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSC
T ss_pred hhcCCCCCEEECCCCcCCCCCh---------------HHh-cCCCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCC
Confidence 7888999999998764321111 001 11367888998775 344444445567899999999999
Q ss_pred cccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEe
Q 002037 693 SMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVK 772 (977)
Q Consensus 693 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~ 772 (977)
.+.... ...+..+++|+.|+++++. +.. +. .+++|+.|.+.++. ++.++ ....+++.|+++
T Consensus 349 ~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~---i~-------~~~~L~~L~l~~N~-l~~l~------~~~~~l~~L~ls 409 (844)
T 3j0a_A 349 HIAIIQ-DQTFKFLEKLQTLDLRDNA-LTT---IH-------FIPSIPDIFLSGNK-LVTLP------KINLTANLIHLS 409 (844)
T ss_dssp CCCCCC-SSCSCSCCCCCEEEEETCC-SCC---CS-------SCCSCSEEEEESCC-CCCCC------CCCTTCCEEECC
T ss_pred CCCccC-hhhhcCCCCCCEEECCCCC-CCc---cc-------CCCCcchhccCCCC-ccccc------ccccccceeecc
Confidence 775543 4456788999999998873 222 11 27889999988863 33332 124678888888
Q ss_pred ecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceec-
Q 002037 773 DCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVL- 851 (977)
Q Consensus 773 ~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~- 851 (977)
+ +++..+........+++|+.|+++++..- .++.. .....+++|+.|+++++.- ....
T Consensus 410 ~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~------------------~~~~~~~~L~~L~Ls~N~l-~~~~~ 468 (844)
T 3j0a_A 410 E-NRLENLDILYFLLRVPHLQILILNQNRFS-SCSGD------------------QTPSENPSLEQLFLGENML-QLAWE 468 (844)
T ss_dssp S-CCCCSSTTHHHHTTCTTCCEEEEESCCCC-CCCSS------------------SSSCSCTTCCBCEEESCCC-SSSCC
T ss_pred c-CccccCchhhhhhcCCccceeeCCCCccc-ccccc------------------cccccCCccccccCCCCcc-ccccc
Confidence 7 56776655555668899999999887532 21110 0112368888888888642 2111
Q ss_pred ---ccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEec
Q 002037 852 ---SLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVW 928 (977)
Q Consensus 852 ---~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~ 928 (977)
....+..+++|+.|++++| .++.++ +..+..+++|+.|+|+++ +++.++..... ++|+.|+++
T Consensus 469 ~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~--------~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~----~~L~~L~Ls 534 (844)
T 3j0a_A 469 TELCWDVFEGLSHLQVLYLNHN-YLNSLP--------PGVFSHLTALRGLSLNSN-RLTVLSHNDLP----ANLEILDIS 534 (844)
T ss_dssp SCCCSSCSSCBCCEECCCCCHH-HHTTCC--------TTSSSSCCSCSEEEEESC-CCSSCCCCCCC----SCCCEEEEE
T ss_pred cccchhhhcCcccccEEECCCC-cccccC--------hhHccchhhhheeECCCC-CCCccChhhhh----ccccEEECC
Confidence 1234567888888998888 344432 334567888999999885 57777765432 688999998
Q ss_pred cCCCCCCCCCCCCCCcccccccc
Q 002037 929 DCPKLMKLPLDTRSAPKLETFKA 951 (977)
Q Consensus 929 ~C~~L~~lp~~~~~~~~L~~l~~ 951 (977)
++ ++..++.. .+++|+.+++
T Consensus 535 ~N-~l~~~~~~--~~~~L~~l~l 554 (844)
T 3j0a_A 535 RN-QLLAPNPD--VFVSLSVLDI 554 (844)
T ss_dssp EE-CCCCCCSC--CCSSCCEEEE
T ss_pred CC-cCCCCChh--HhCCcCEEEe
Confidence 75 45554332 2345665543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=3.2e-26 Score=277.21 Aligned_cols=150 Identities=14% Similarity=0.200 Sum_probs=94.1
Q ss_pred HHhcCCCccEEEccCCcCCC------------------CCCCcc--cCCCCCeEecCCCCCCC--CccccCCCCccEEEc
Q 002037 461 FFEHTREIKNLDLSSTNISS------------------LAPSLP--CLEKLRSLHLENTHLND--ASLIREFGELEVLIL 518 (977)
Q Consensus 461 ~~~~l~~Lr~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l 518 (977)
.|.++++|++|++++|.+.. +|+.++ .+++|++|+|++|.+.. |..++++++|++|++
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI 522 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC
Confidence 35667777777777777776 677666 77777777777776544 666777777777777
Q ss_pred cCCC-Ccc--cCccccCCC-------CCCEEEcCCCCCCCccCh--hhhhcCccccEEEccCCcCCccccccccCcCccc
Q 002037 519 KGSR-IVE--LPNGIGTVS-------NLKLLDLSNNLFLQVIPP--NVISKLSQLEELYVGNSFGDWEVEETANGQNARF 586 (977)
Q Consensus 519 ~~~~-l~~--lp~~i~~l~-------~L~~L~l~~~~~~~~~p~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 586 (977)
++|+ ++. +|..++++. +|++|++++|.+. .+|. . ++++++|++|++++|... .+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~-l~~L~~L~~L~Ls~N~l~------------~l 588 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS-LQKMVKLGLLDCVHNKVR------------HL 588 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH-HTTCTTCCEEECTTSCCC------------BC
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh-hhcCCCCCEEECCCCCcc------------cc
Confidence 7776 653 666555444 7777777777654 6666 4 677777777777665321 11
Q ss_pred cccccCCCCcEEEeeecCccccccCCCCCCCC-cceEEEE
Q 002037 587 SEVASLTRLTVLYIHVSNTKVLSVDFDGPWTN-LKRFRVC 625 (977)
Q Consensus 587 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~ 625 (977)
..++.+++|+.|+++.+....++.. +..+++ |+.|++.
T Consensus 589 p~~~~L~~L~~L~Ls~N~l~~lp~~-l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 589 EAFGTNVKLTDLKLDYNQIEEIPED-FCAFTDQVEGLGFS 627 (876)
T ss_dssp CCCCTTSEESEEECCSSCCSCCCTT-SCEECTTCCEEECC
T ss_pred hhhcCCCcceEEECcCCccccchHH-HhhccccCCEEECc
Confidence 2566666777777776665533322 233343 4444443
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.94 E-value=2.9e-26 Score=273.76 Aligned_cols=347 Identities=14% Similarity=0.160 Sum_probs=185.9
Q ss_pred HHhcCCCccEEEccCCcCCC------------------CCCCcc--cCCCCCeEecCCCCCCC--CccccCCCCccEEEc
Q 002037 461 FFEHTREIKNLDLSSTNISS------------------LAPSLP--CLEKLRSLHLENTHLND--ASLIREFGELEVLIL 518 (977)
Q Consensus 461 ~~~~l~~Lr~L~l~~~~~~~------------------lp~~~~--~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l 518 (977)
.+.++++|++|++++|.+.. +|+.++ .+++|++|++++|.+.. |..++++++|++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV 280 (636)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC
T ss_pred HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC
Confidence 35677777777777777776 777777 77777777777777554 667777777777777
Q ss_pred cCCC-Cc--ccCccccCC------CCCCEEEcCCCCCCCccCh--hhhhcCccccEEEccCCcCCccccccccCcCcccc
Q 002037 519 KGSR-IV--ELPNGIGTV------SNLKLLDLSNNLFLQVIPP--NVISKLSQLEELYVGNSFGDWEVEETANGQNARFS 587 (977)
Q Consensus 519 ~~~~-l~--~lp~~i~~l------~~L~~L~l~~~~~~~~~p~--~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 587 (977)
++|+ ++ .+|..++++ ++|++|++++|.+. .+|. . ++.+++|++|+++++.... .+.
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g-----------~ip 347 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEG-----------KLP 347 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEE-----------ECC
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCcc-----------chh
Confidence 7776 66 377766665 77777777777654 6666 4 6777777777776653210 111
Q ss_pred ccccCCCCcEEEeeecCccccccCCCCCCCC-cceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecC
Q 002037 588 EVASLTRLTVLYIHVSNTKVLSVDFDGPWTN-LKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTR 666 (977)
Q Consensus 588 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~ 666 (977)
.++.+++|+.|+++.+....++.. +..+++ |+.|++..+
T Consensus 348 ~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N--------------------------------------- 387 (636)
T 4eco_A 348 AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHN--------------------------------------- 387 (636)
T ss_dssp CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSS---------------------------------------
T ss_pred hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCC---------------------------------------
Confidence 456666777777776655533332 223333 444444332
Q ss_pred CCCccccc-ccccCCCCCccEEeeccccccccccCCccc------ccccceEEEEEeecccceeeecccccccccccccc
Q 002037 667 SSNLQDIG-EIDVQGFTGLMCMHLRACSMQRIFHSNFYP------TVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRL 739 (977)
Q Consensus 667 ~~~~~~~~-~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~------~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 739 (977)
. +..++ .+....+++|+.|++++|.+.+..|..+.. .+++|+.|+++++.- ..++.. ....+++|
T Consensus 388 -~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l-~~lp~~-----~~~~l~~L 459 (636)
T 4eco_A 388 -K-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI-SKFPKE-----LFSTGSPL 459 (636)
T ss_dssp -C-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC-CSCCTH-----HHHTTCCC
T ss_pred -c-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc-CcCCHH-----HHccCCCC
Confidence 2 11222 122223446777777777666554433210 445666666666522 222110 00125666
Q ss_pred ceeeccCccCcceeeecccc-----cccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhh
Q 002037 740 RELVLVGLPKVLTIWKGNHS-----VVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEV 814 (977)
Q Consensus 740 ~~L~L~~~~~L~~i~~~~~~-----~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~ 814 (977)
+.|+++++. ++.+...... ...+++|+.|++++| +++.++.......+++|+.|+++++..- .++...
T Consensus 460 ~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~---- 532 (636)
T 4eco_A 460 SSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFS-KFPTQP---- 532 (636)
T ss_dssp SEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSSCCS-SCCCGG----
T ss_pred CEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCCCCC-CcChhh----
Confidence 666666653 3332211110 012236666666664 4444422111125666666666665422 232211
Q ss_pred hhccccccccCCCCCCCcCCCccEEEecccc-----CcceecccccccccccccEEEEecccccceeeeccccccccccc
Q 002037 815 EQGAAQERNVSSAPQPMFFPNLKKLLIGKCN-----KMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENK 889 (977)
Q Consensus 815 ~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~-----~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~ 889 (977)
..+++|+.|+|+++. ++.... +..+.++++|++|++++|.- +.+ |..
T Consensus 533 ----------------~~l~~L~~L~Ls~N~~ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l-~~i---------p~~- 584 (636)
T 4eco_A 533 ----------------LNSSTLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGSNDI-RKV---------NEK- 584 (636)
T ss_dssp ----------------GGCSSCCEEECCSCBCTTCCBCCCCC-CTTGGGCSSCCEEECCSSCC-CBC---------CSC-
T ss_pred ----------------hcCCCCCEEECCCCcccccCcccccC-hHHHhcCCCCCEEECCCCcC-Ccc---------CHh-
Confidence 135666666664432 111111 22345566666666666643 333 111
Q ss_pred ccccccceeeccccc
Q 002037 890 NVLPKLKILALEDLP 904 (977)
Q Consensus 890 ~~~~~L~~L~l~~c~ 904 (977)
.+++|+.|++++++
T Consensus 585 -~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 -ITPNISVLDIKDNP 598 (636)
T ss_dssp -CCTTCCEEECCSCT
T ss_pred -HhCcCCEEECcCCC
Confidence 22566666666654
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=5.3e-25 Score=253.60 Aligned_cols=171 Identities=21% Similarity=0.343 Sum_probs=136.0
Q ss_pred ccccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEec
Q 002037 417 EDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 496 (977)
Q Consensus 417 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 496 (977)
.++.+++.|++.++.+..++....+++|++|++++|.+..++. +.++++|++|++++|.+..+++ ++.+++|++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred hHhccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEEC
Confidence 3467889999998888888877788999999999998888776 7889999999999998888877 888999999999
Q ss_pred CCCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 497 ENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 497 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
++|.+.....+..+++|++|++++|.+..+|. ++.+++|++|+++++ ...+++ ++.+++|++|+++++...
T Consensus 120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~--~~~l~~L~~L~l~~n~l~---- 190 (466)
T 1o6v_A 120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQ--VTDLKP--LANLTTLERLDISSNKVS---- 190 (466)
T ss_dssp CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEES--CCCCGG--GTTCTTCCEEECCSSCCC----
T ss_pred CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCc--ccCchh--hccCCCCCEEECcCCcCC----
Confidence 99988885558889999999999998888764 888999999998643 233333 788899999998876321
Q ss_pred ccccCcCccccccccCCCCcEEEeeecCccc
Q 002037 577 ETANGQNARFSEVASLTRLTVLYIHVSNTKV 607 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 607 (977)
.+..+..+++|+.|+++.+....
T Consensus 191 --------~~~~l~~l~~L~~L~l~~n~l~~ 213 (466)
T 1o6v_A 191 --------DISVLAKLTNLESLIATNNQISD 213 (466)
T ss_dssp --------CCGGGGGCTTCSEEECCSSCCCC
T ss_pred --------CChhhccCCCCCEEEecCCcccc
Confidence 12346777788888887665443
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=5.8e-24 Score=251.31 Aligned_cols=455 Identities=15% Similarity=0.136 Sum_probs=288.4
Q ss_pred ccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCCCC
Q 002037 422 CEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 500 (977)
.+.++++++.++.+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++|.
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CcEEEcCCCCCccCCCCC-CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 478899999998888643 38999999999999999888889999999999999999987 4578999999999999999
Q ss_pred CCC-CccccCCCCccEEEccCCCCcccC--ccccCCCCCCEEEcCCCCCCCccChhhhhcCccc--cEEEccCCcCCccc
Q 002037 501 LND-ASLIREFGELEVLILKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQL--EELYVGNSFGDWEV 575 (977)
Q Consensus 501 l~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L--~~L~l~~~~~~~~~ 575 (977)
+.. |.. .+++|++|++++|.+..+| ..++++++|++|++++|.+... . +..+++| ++|+++++....
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~L~~n~l~~-- 183 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---D-LLPVAHLHLSCILLDLVSYHI-- 183 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---T-TGGGTTSCEEEEEEEESSCCC--
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---c-hhhhhhceeeEEEeecccccc--
Confidence 888 444 8999999999999998765 6799999999999999986542 2 4555665 999988764200
Q ss_pred cccccCcCccccccccCCCCcEE--EeeecCccc-cccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHH
Q 002037 576 EETANGQNARFSEVASLTRLTVL--YIHVSNTKV-LSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWV 652 (977)
Q Consensus 576 ~~~~~~~~~~~~~l~~l~~L~~L--~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 652 (977)
.......+..+.. +.+ ++..+.... .+......+++|+.+++..+... -...+..+
T Consensus 184 ------~~~~~~~l~~l~~-~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~--------------~~~l~~~~ 242 (562)
T 3a79_B 184 ------KGGETESLQIPNT-TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN--------------CQRLMTFL 242 (562)
T ss_dssp ------CSSSCCEEEECCE-EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTT--------------HHHHHHHH
T ss_pred ------cccCcccccccCc-ceEEEEecCccchhhhhhhcccccceEEEecccccccc--------------cchHHHHH
Confidence 1111233333321 233 333333221 22222334566666666554200 00112222
Q ss_pred HHH--HhccceeEecCCCCccc-c-cccccCCCCCccEEeeccccccccccCCcc----cccccceEEEEEeecccceee
Q 002037 653 KLL--LEKTEYLTLTRSSNLQD-I-GEIDVQGFTGLMCMHLRACSMQRIFHSNFY----PTVQILEELHVEYCYSLKEVF 724 (977)
Q Consensus 653 ~~~--~~~L~~L~l~~~~~~~~-~-~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~l~~~~ 724 (977)
... .++++.|.+.++.--.. + ........++|+.|++++|.+.+..|...+ +.++.|+.+++..... .++
T Consensus 243 ~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p 320 (562)
T 3a79_B 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFS 320 (562)
T ss_dssp HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSC
T ss_pred HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecC
Confidence 211 24455555543211000 0 000111235899999999987766665543 4455555555444321 111
Q ss_pred eccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccccc
Q 002037 725 CLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLME 804 (977)
Q Consensus 725 ~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 804 (977)
. ..+ ......++|+.|.+.++.- ..+ .....+++|+.|+++++ ++....+ ..+..+++|+.|+++++. ++
T Consensus 321 ~-~~~-~~~~~~~~L~~L~l~~n~~-~~~----~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~N~-l~ 390 (562)
T 3a79_B 321 K-EAL-YSVFAEMNIKMLSISDTPF-IHM----VCPPSPSSFTFLNFTQN-VFTDSVF-QGCSTLKRLQTLILQRNG-LK 390 (562)
T ss_dssp H-HHH-HHHHHTCCCSEEEEESSCC-CCC----CCCSSCCCCCEEECCSS-CCCTTTT-TTCCSCSSCCEEECCSSC-CC
T ss_pred h-hhh-hhhhccCcceEEEccCCCc-ccc----cCccCCCCceEEECCCC-ccccchh-hhhcccCCCCEEECCCCC-cC
Confidence 0 000 0000125688888888742 211 11146789999999986 4554322 334678999999998874 33
Q ss_pred ceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccc
Q 002037 805 EIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEK 884 (977)
Q Consensus 805 ~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~ 884 (977)
.++.... ....+++|+.|+++++.--..+ +...+..+++|++|++++|.--..+
T Consensus 391 ~~~~~~~-----------------~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~-------- 444 (562)
T 3a79_B 391 NFFKVAL-----------------MTKNMSSLETLDVSLNSLNSHA-YDRTCAWAESILVLNLSSNMLTGSV-------- 444 (562)
T ss_dssp BTTHHHH-----------------TTTTCTTCCEEECTTSCCBSCC-SSCCCCCCTTCCEEECCSSCCCGGG--------
T ss_pred Ccccchh-----------------hhcCCCCCCEEECCCCcCCCcc-ChhhhcCcccCCEEECCCCCCCcch--------
Confidence 3221100 0124789999999987643323 3445677899999999988632211
Q ss_pred cccccccc-cccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCCC-CCCCccccccccch
Q 002037 885 AAENKNVL-PKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPLD-TRSAPKLETFKAHS 953 (977)
Q Consensus 885 ~~~~~~~~-~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~~-~~~~~~L~~l~~~~ 953 (977)
...+ ++|+.|+++++ +++.++.... .+++|++|+++++ +++.+|.. +..+++|+.++++.
T Consensus 445 ----~~~l~~~L~~L~L~~N-~l~~ip~~~~---~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 445 ----FRCLPPKVKVLDLHNN-RIMSIPKDVT---HLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp ----GSSCCTTCSEEECCSS-CCCCCCTTTT---SSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCS
T ss_pred ----hhhhcCcCCEEECCCC-cCcccChhhc---CCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecC
Confidence 1223 68999999997 6888877544 3689999999885 58889887 77888999887543
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.93 E-value=7.5e-25 Score=256.81 Aligned_cols=439 Identities=13% Similarity=0.117 Sum_probs=310.9
Q ss_pred CCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCC
Q 002037 412 KGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLE 489 (977)
Q Consensus 412 ~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~ 489 (977)
..+|..-.+++++|++++|.+..++. +..+++|++|++++|.+..+++..|.++++|++|++++|.+..+|.. .++
T Consensus 13 ~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 13 IHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp SSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 34454335789999999999988763 57899999999999999998888899999999999999999999887 899
Q ss_pred CCCeEecCCCCCCC---CccccCCCCccEEEccCCCCcccCccccCCCCC--CEEEcCCCCC--CCccChhhhhcCcc-c
Q 002037 490 KLRSLHLENTHLND---ASLIREFGELEVLILKGSRIVELPNGIGTVSNL--KLLDLSNNLF--LQVIPPNVISKLSQ-L 561 (977)
Q Consensus 490 ~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~i~~L~~-L 561 (977)
+|++|++++|.+.. |..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ ....|.. +..+.. .
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~ 167 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTES 167 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc-ccccccce
Confidence 99999999999875 5789999999999999999886 457778888 9999999987 5666665 666653 2
Q ss_pred cEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecC-------ccccccCCCCCCCCcceEEEEecCcccCCC
Q 002037 562 EELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSN-------TKVLSVDFDGPWTNLKRFRVCVNDDYWEIA 634 (977)
Q Consensus 562 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 634 (977)
-.+++.++... .......+..+++|+.++++.+. ...... .+..+++|+.|++..+...
T Consensus 168 l~l~l~~n~~~---------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~---- 233 (520)
T 2z7x_B 168 LHIVFPTNKEF---------HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT---- 233 (520)
T ss_dssp EEEECCSSSCC---------CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE----
T ss_pred EEEEeccCcch---------hhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC----
Confidence 23444443211 11122345678889999998864 211111 3456788999988765311
Q ss_pred CcceeeecccchhhHHHHHH--HHhccceeEecCCCCcccccccc----cCCCCCccEEeeccccccccccCCccccc--
Q 002037 635 PKRSMHLKNLSNSIASWVKL--LLEKTEYLTLTRSSNLQDIGEID----VQGFTGLMCMHLRACSMQRIFHSNFYPTV-- 706 (977)
Q Consensus 635 ~~~~l~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~l~----~~~l~~L~~L~L~~~~~~~~~~~~~~~~l-- 706 (977)
...+..+.. ..++|+.|++.++.-...++... ...+++|+.+++++|.+ .+|...+..+
T Consensus 234 -----------~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~ 300 (520)
T 2z7x_B 234 -----------WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFS 300 (520)
T ss_dssp -----------HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHH
T ss_pred -----------HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccc
Confidence 111111111 13589999998764322332211 15789999999999976 3343233333
Q ss_pred -ccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccc-hh
Q 002037 707 -QILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFS-RT 784 (977)
Q Consensus 707 -~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~~ 784 (977)
.+|+.|+++++.-. ...... .+++|+.|+++++. ++.. .+...+.+++|+.|++++| ++..++. +.
T Consensus 301 ~~~L~~L~l~~n~l~-~~~~~~-------~l~~L~~L~Ls~n~-l~~~--~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~ 368 (520)
T 2z7x_B 301 NMNIKNFTVSGTRMV-HMLCPS-------KISPFLHLDFSNNL-LTDT--VFENCGHLTELETLILQMN-QLKELSKIAE 368 (520)
T ss_dssp TCCCSEEEEESSCCC-CCCCCS-------SCCCCCEEECCSSC-CCTT--TTTTCCCCSSCCEEECCSS-CCCBHHHHHH
T ss_pred cCceeEEEcCCCccc-cccchh-------hCCcccEEEeECCc-cChh--hhhhhccCCCCCEEEccCC-ccCccccchH
Confidence 56999999998532 221112 48999999999984 3321 1234568999999999996 4554421 23
Q ss_pred HHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceeccccccccc-cccc
Q 002037 785 LAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNL-KQLE 863 (977)
Q Consensus 785 ~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L~ 863 (977)
.+..+++|++|++++|.....++... ...+++|+.|++++|.-.... + ..+ ++|+
T Consensus 369 ~~~~l~~L~~L~Ls~N~l~~~l~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~-~----~~l~~~L~ 424 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQNSVSYDEKKGD-------------------CSWTKSLLSLNMSSNILTDTI-F----RCLPPRIK 424 (520)
T ss_dssp HHTTCTTCCEEECCSSCCBCCGGGCS-------------------CCCCTTCCEEECCSSCCCGGG-G----GSCCTTCC
T ss_pred HHhhCCCCCEEECCCCcCCcccccch-------------------hccCccCCEEECcCCCCCcch-h----hhhcccCC
Confidence 46789999999999987543343211 124799999999998643332 2 222 7999
Q ss_pred EEEEecccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCC
Q 002037 864 ELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCP 931 (977)
Q Consensus 864 ~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~ 931 (977)
.|++++|. ++.+ +.....+++|+.|++++| +++.++...+. .+++|++|+++++|
T Consensus 425 ~L~Ls~N~-l~~i---------p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~--~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 425 VLDLHSNK-IKSI---------PKQVVKLEALQELNVASN-QLKSVPDGIFD--RLTSLQKIWLHTNP 479 (520)
T ss_dssp EEECCSSC-CCCC---------CGGGGGCTTCCEEECCSS-CCCCCCTTTTT--TCTTCCEEECCSSC
T ss_pred EEECCCCc-cccc---------chhhhcCCCCCEEECCCC-cCCccCHHHhc--cCCcccEEECcCCC
Confidence 99999994 5555 444568999999999997 58888776333 37999999999876
No 25
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=4.9e-24 Score=257.00 Aligned_cols=476 Identities=17% Similarity=0.113 Sum_probs=256.3
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-Cccc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPC 487 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~ 487 (977)
...+|..-..+++.|++++|.++.++. +.++++|++|++++|.+..+++..|.++++|++|+|++|.++.+|+ .+..
T Consensus 43 l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 43 FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp CSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred cCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 445554334578888888888887764 5678888888888888888887778888888888888888888876 5688
Q ss_pred CCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcc--cCccccCCCCCCEEEcCCCCCCCccChhhhhcCcccc-
Q 002037 488 LEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVE--LPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLE- 562 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~- 562 (977)
+++|++|++++|.+.. +..++++++|++|++++|.+.. +|..++.+++|++|++++|.+.. +++..+..+.+++
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPL 201 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTT
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc-cccccccchhhhhh
Confidence 8888888888888777 3457888888888888888764 46677888888888888887544 3333355555443
Q ss_pred ---EEEccCCcCCccccccccCc--------------CccccccccCCCCcEEEeeecCccc------cccCCCCCCCCc
Q 002037 563 ---ELYVGNSFGDWEVEETANGQ--------------NARFSEVASLTRLTVLYIHVSNTKV------LSVDFDGPWTNL 619 (977)
Q Consensus 563 ---~L~l~~~~~~~~~~~~~~~~--------------~~~~~~l~~l~~L~~L~l~~~~~~~------~~~~~~~~~~~L 619 (977)
.++++.+............. ......+..+..++...+....... .....+.....+
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 34444332111100000000 0000112233333333333221100 000111111222
Q ss_pred ceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeecccccccccc
Q 002037 620 KRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFH 699 (977)
Q Consensus 620 ~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~ 699 (977)
....+........ .... +. ......+++.+.+.+... ..+. ......+|+.|++.+|.+....+
T Consensus 282 ~~~~l~~~~~~~~--------~~~~----~~-~~~~~~~l~~l~~~~~~~-~~~~--~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 282 TIEEFRLAYLDYY--------LDGI----ID-LFNCLTNVSSFSLVSVTI-ERVK--DFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp EEEEEEEECCCSC--------EEEC----TT-TTGGGTTCSEEEEESCEE-EECG--GGGSCCCCSEEEEESCEESSCCC
T ss_pred hhhhhhhhhhccc--------ccch----hh-hhhhhccccccccccccc-cccc--ccccchhhhhhhcccccccCcCc
Confidence 2222221100000 0000 00 000123344444433211 1111 11224455566665554333221
Q ss_pred CCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeec-----------------------
Q 002037 700 SNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKG----------------------- 756 (977)
Q Consensus 700 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~----------------------- 756 (977)
..++.|+.+.+..+... ..+... .+++|+.|.+.++. +......
T Consensus 346 ----~~l~~L~~l~l~~n~~~-~~~~~~-------~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~ 412 (635)
T 4g8a_A 346 ----LKLKSLKRLTFTSNKGG-NAFSEV-------DLPSLEFLDLSRNG-LSFKGCCSQSDFGTISLKYLDLSFNGVITM 412 (635)
T ss_dssp ----CBCTTCCEEEEESCCSC-CBCCCC-------BCTTCCEEECCSSC-CBEEEECCHHHHSCSCCCEEECCSCSEEEE
T ss_pred ----ccchhhhhcccccccCC-CCcccc-------cccccccchhhccc-cccccccccchhhhhhhhhhhccccccccc
Confidence 12344444444443211 111111 14445555444432 1111111
Q ss_pred ccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCc
Q 002037 757 NHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNL 836 (977)
Q Consensus 757 ~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L 836 (977)
...+..+++|+.+.+..+...... +...+..+.+|+.++++.+..-...+. ....+++|
T Consensus 413 ~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~l~~l~~l~ls~n~l~~~~~~--------------------~~~~~~~L 471 (635)
T 4g8a_A 413 SSNFLGLEQLEHLDFQHSNLKQMS-EFSVFLSLRNLIYLDISHTHTRVAFNG--------------------IFNGLSSL 471 (635)
T ss_dssp CSCCTTCTTCCEEECTTSEEESTT-SSCTTTTCTTCCEEECTTSCCEECCTT--------------------TTTTCTTC
T ss_pred cccccccccccchhhhhccccccc-ccccccccccccccccccccccccccc--------------------ccccchhh
Confidence 112234455555555443322221 222234455555555554432111111 12357899
Q ss_pred cEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccccccccccCcccc
Q 002037 837 KKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAA 916 (977)
Q Consensus 837 ~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~ 916 (977)
+.|++.++.....+. ...+..+++|++|++++| .++.++ +..+..+++|+.|+|+++ ++++++...+.
T Consensus 472 ~~L~Ls~N~~~~~~~-~~~~~~l~~L~~L~Ls~N-~L~~l~--------~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~- 539 (635)
T 4g8a_A 472 EVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQC-QLEQLS--------PTAFNSLSSLQVLNMSHN-NFFSLDTFPYK- 539 (635)
T ss_dssp CEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTS-CCCEEC--------TTTTTTCTTCCEEECTTS-CCCBCCCGGGT-
T ss_pred hhhhhhhcccccccC-chhhhhccccCEEECCCC-ccCCcC--------hHHHcCCCCCCEEECCCC-cCCCCChhHHh-
Confidence 999999987766553 345788999999999999 455552 455678999999999996 58888765444
Q ss_pred ccCCCccEEEeccCCCCCCC-CCCCCCC-cccccccc
Q 002037 917 LRWPSLEELKVWDCPKLMKL-PLDTRSA-PKLETFKA 951 (977)
Q Consensus 917 ~~~~sL~~L~i~~C~~L~~l-p~~~~~~-~~L~~l~~ 951 (977)
.+++|++|+++++ ++..+ |..+..+ ++|+.|++
T Consensus 540 -~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 540 -CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp -TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEEC
T ss_pred -CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEe
Confidence 3799999999885 46665 5566666 57888864
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=4.2e-24 Score=246.08 Aligned_cols=343 Identities=23% Similarity=0.320 Sum_probs=214.0
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEcc
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILK 519 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~ 519 (977)
.+++++.|++.++.+..++. +..+++|++|++++|.+..+|+ ++.+++|++|++++|.+.....++++++|++|+++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 120 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECC
Confidence 35688999999999888775 6789999999999999998887 89999999999999998884449999999999999
Q ss_pred CCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEE
Q 002037 520 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLY 599 (977)
Q Consensus 520 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 599 (977)
+|.+..+|. ++++++|++|++++|.+. .++ . ++.+++|++|+++++. .....+..+++|+.|+
T Consensus 121 ~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 121 NNQITDIDP-LKNLTNLNRLELSSNTIS-DIS-A-LSGLTSLQQLSFGNQV-------------TDLKPLANLTTLERLD 183 (466)
T ss_dssp SSCCCCCGG-GTTCTTCSEEEEEEEEEC-CCG-G-GTTCTTCSEEEEEESC-------------CCCGGGTTCTTCCEEE
T ss_pred CCCCCCChH-HcCCCCCCEEECCCCccC-CCh-h-hccCCcccEeecCCcc-------------cCchhhccCCCCCEEE
Confidence 999998876 899999999999999744 454 3 7899999999886431 1123477788888888
Q ss_pred eeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccccccccC
Q 002037 600 IHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQ 679 (977)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 679 (977)
++.+.....+. +..+++ |+.|++.++. +..... ..
T Consensus 184 l~~n~l~~~~~--l~~l~~----------------------------------------L~~L~l~~n~-l~~~~~--~~ 218 (466)
T 1o6v_A 184 ISSNKVSDISV--LAKLTN----------------------------------------LESLIATNNQ-ISDITP--LG 218 (466)
T ss_dssp CCSSCCCCCGG--GGGCTT----------------------------------------CSEEECCSSC-CCCCGG--GG
T ss_pred CcCCcCCCChh--hccCCC----------------------------------------CCEEEecCCc-cccccc--cc
Confidence 88765443221 222333 3344443321 111211 23
Q ss_pred CCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccc
Q 002037 680 GFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHS 759 (977)
Q Consensus 680 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~ 759 (977)
.+++|+.|++++|.+... ..+..+++|+.|++++|. +....++. .+++|+.|.+.++. ++.+ .+
T Consensus 219 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~~~-------~l~~L~~L~l~~n~-l~~~----~~ 282 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQ-ISNLAPLS-------GLTKLTELKLGANQ-ISNI----SP 282 (466)
T ss_dssp GCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGT-------TCTTCSEEECCSSC-CCCC----GG
T ss_pred ccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCc-cccchhhh-------cCCCCCEEECCCCc-cCcc----cc
Confidence 467777777777765543 125566677777776653 22222222 26666666666652 2221 12
Q ss_pred cccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEE
Q 002037 760 VVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKL 839 (977)
Q Consensus 760 ~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L 839 (977)
...+++|+.|++++| ++..+++ +..+++|+.|++++|. +..+... ..+++|+.|
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~~---------------------~~l~~L~~L 336 (466)
T 1o6v_A 283 LAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISPV---------------------SSLTKLQRL 336 (466)
T ss_dssp GTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGGG---------------------GGCTTCCEE
T ss_pred ccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchhh---------------------ccCccCCEe
Confidence 345566666666664 3444422 3455666666666653 2222111 135666666
Q ss_pred EeccccCcceecccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccc
Q 002037 840 LIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLP 904 (977)
Q Consensus 840 ~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 904 (977)
++++| .+..+ ..+..+++|+.|++++|.- ..+. + +..+++|+.|++++|+
T Consensus 337 ~l~~n-~l~~~---~~l~~l~~L~~L~l~~n~l-~~~~--------~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 337 FFYNN-KVSDV---SSLANLTNINWLSAGHNQI-SDLT--------P--LANLTRITQLGLNDQA 386 (466)
T ss_dssp ECCSS-CCCCC---GGGTTCTTCCEEECCSSCC-CBCG--------G--GTTCTTCCEEECCCEE
T ss_pred ECCCC-ccCCc---hhhccCCCCCEEeCCCCcc-Cccc--------h--hhcCCCCCEEeccCCc
Confidence 66665 33332 2344556666666665532 2210 1 3455556666665543
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.1e-24 Score=263.82 Aligned_cols=123 Identities=11% Similarity=0.183 Sum_probs=75.8
Q ss_pred CCCCC-CccccCCCCccEEEccCCCCcc------------------cCcccc--CCCCCCEEEcCCCCCCCccChhhhhc
Q 002037 499 THLND-ASLIREFGELEVLILKGSRIVE------------------LPNGIG--TVSNLKLLDLSNNLFLQVIPPNVISK 557 (977)
Q Consensus 499 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~i~~ 557 (977)
|.+.. |..++++++|++|+|++|.++. +|..++ ++++|++|++++|.+...+|.. +++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhC
Confidence 44444 6677777888888888877776 777777 7888888888887777777765 777
Q ss_pred CccccEEEccCCc-CCc-cccccccCcCcccc-ccccCCCCcEEEeeecCcccccc-CCCCCCCCcceEEEEe
Q 002037 558 LSQLEELYVGNSF-GDW-EVEETANGQNARFS-EVASLTRLTVLYIHVSNTKVLSV-DFDGPWTNLKRFRVCV 626 (977)
Q Consensus 558 L~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~ 626 (977)
+++|++|++++|. ... .++. ....+. .+..+++|+.|+++.+....++. ..+..+++|+.|+++.
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~----~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~ 582 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKA----DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH 582 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHH----HHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCCCcccccchH----HHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC
Confidence 8888888877763 221 1110 000001 23344577777777776654433 1344455555555543
No 28
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=3.5e-24 Score=255.82 Aligned_cols=118 Identities=14% Similarity=0.179 Sum_probs=74.7
Q ss_pred CCCCC-CccccCCCCccEEEccCCCCcc------------------cCcccc--CCCCCCEEEcCCCCCCCccChhhhhc
Q 002037 499 THLND-ASLIREFGELEVLILKGSRIVE------------------LPNGIG--TVSNLKLLDLSNNLFLQVIPPNVISK 557 (977)
Q Consensus 499 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~------------------lp~~i~--~l~~L~~L~l~~~~~~~~~p~~~i~~ 557 (977)
|.++. |..++++++|++|++++|.++. +|..++ ++++|++|++++|.+...+|.. +++
T Consensus 193 n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~ 271 (636)
T 4eco_A 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKA 271 (636)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTT
T ss_pred CCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-Hhc
Confidence 33444 6667777777777777777776 777777 7777777777777777777765 777
Q ss_pred CccccEEEccCCc-CCc-cccccccCcCcccccccc------CCCCcEEEeeecCcccccc-CCCCCCCCcceEEEEec
Q 002037 558 LSQLEELYVGNSF-GDW-EVEETANGQNARFSEVAS------LTRLTVLYIHVSNTKVLSV-DFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 558 L~~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~~l~~------l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 627 (977)
+++|++|+++++. ... .+ ...++. +++|+.|+++.+....++. ..++.+++|+.|++..+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~l----------p~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N 340 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQL----------KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHH----------HHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC
T ss_pred CCCCCEEECcCCCCCccccc----------hHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC
Confidence 7777777777663 211 11 122333 3777777777776654433 13445666666665544
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=7.5e-24 Score=243.94 Aligned_cols=383 Identities=16% Similarity=0.219 Sum_probs=232.2
Q ss_pred EEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC-CC-CCCcccCCCCCeEecCCCCC
Q 002037 424 KLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SL-APSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 424 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~~~~l~~L~~L~L~~~~l 501 (977)
.+...++.+..+|. -.++|++|++++|.+..+++..|.++++|++|++++|.+. .+ +..+..+++|++|++++|.+
T Consensus 14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 34555566777776 3378889999988888877777888889999999988876 44 34788888999999998888
Q ss_pred CC--CccccCCCCccEEEccCCCCcc-cCcc--ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 502 ND--ASLIREFGELEVLILKGSRIVE-LPNG--IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 502 ~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
.. +..++++++|++|++++|.+.. .|.. ++.+++|++|++++|.+....|...++.+++|++|+++++.....
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-- 169 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI-- 169 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC--
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc--
Confidence 76 6778888899999999888874 3444 788888999999888876665665578888888888877642111
Q ss_pred ccccCcCccccccccC--CCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHH
Q 002037 577 ETANGQNARFSEVASL--TRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKL 654 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 654 (977)
....+..+ .+|+.|+++.+.....+..... +
T Consensus 170 --------~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~------------------------------------~--- 202 (455)
T 3v47_A 170 --------CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG------------------------------------W--- 202 (455)
T ss_dssp --------CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT------------------------------------H---
T ss_pred --------ChhhhhccccccccccccccCcccccchhhcc------------------------------------c---
Confidence 11222222 3455555554433222111100 0
Q ss_pred HHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccc--cccceEEEEEeecccceeeeccccccc
Q 002037 655 LLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPT--VQILEELHVEYCYSLKEVFCLEDIEGE 732 (977)
Q Consensus 655 ~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~l~~~~~~~~~~~~ 732 (977)
........+++|+.|++++|.+....+..+... .++|+.|+++++...........
T Consensus 203 ------------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---- 260 (455)
T 3v47_A 203 ------------------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN---- 260 (455)
T ss_dssp ------------------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS----
T ss_pred ------------------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh----
Confidence 000001124567777777775555444322211 24566666655533221111000
Q ss_pred cccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchh
Q 002037 733 QAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEA 812 (977)
Q Consensus 733 ~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~ 812 (977)
++.+....+ .....++|+.|++++| ++.... +..+..+++|++|++++|..-...+..
T Consensus 261 ---~~~~~~~~~--------------~~~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~--- 318 (455)
T 3v47_A 261 ---FKDPDNFTF--------------KGLEASGVKTCDLSKS-KIFALL-KSVFSHFTDLEQLTLAQNEINKIDDNA--- 318 (455)
T ss_dssp ---SCCCCTTTT--------------GGGTTSCCCEEECCSS-CCCEEC-TTTTTTCTTCCEEECTTSCCCEECTTT---
T ss_pred ---hccCccccc--------------ccccccCceEEEecCc-cccccc-hhhcccCCCCCEEECCCCcccccChhH---
Confidence 111111000 1112356777777774 344432 233466778888888777532211111
Q ss_pred hhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccccccc
Q 002037 813 EVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVL 892 (977)
Q Consensus 813 ~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~ 892 (977)
...+++|++|++++| .+..+. ...+..+++|++|++++|. ++.+. +..+..+
T Consensus 319 -----------------~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~--------~~~~~~l 370 (455)
T 3v47_A 319 -----------------FWGLTHLLKLNLSQN-FLGSID-SRMFENLDKLEVLDLSYNH-IRALG--------DQSFLGL 370 (455)
T ss_dssp -----------------TTTCTTCCEEECCSS-CCCEEC-GGGGTTCTTCCEEECCSSC-CCEEC--------TTTTTTC
T ss_pred -----------------hcCcccCCEEECCCC-ccCCcC-hhHhcCcccCCEEECCCCc-ccccC--------hhhcccc
Confidence 124678888888876 344442 3346778888888888874 33331 3456678
Q ss_pred cccceeeccccccccccccCccccccCCCccEEEeccCCC
Q 002037 893 PKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPK 932 (977)
Q Consensus 893 ~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~ 932 (977)
++|++|+++++ ++++++...+. .+++|++|+++++|-
T Consensus 371 ~~L~~L~L~~N-~l~~~~~~~~~--~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 371 PNLKELALDTN-QLKSVPDGIFD--RLTSLQKIWLHTNPW 407 (455)
T ss_dssp TTCCEEECCSS-CCSCCCTTTTT--TCTTCCEEECCSSCB
T ss_pred ccccEEECCCC-ccccCCHhHhc--cCCcccEEEccCCCc
Confidence 88888888884 47777665433 368888888887653
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.6e-23 Score=229.99 Aligned_cols=302 Identities=18% Similarity=0.252 Sum_probs=178.1
Q ss_pred ccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCC
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 498 (977)
+++++.+++.++.+..++.+..+++|++|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 43 l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT
T ss_pred cccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC
Confidence 56677777777777666666666777777777776666554 566677777777777666653 466666777777777
Q ss_pred CCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 499 THLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 499 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
|.+.....+..+++|++|++++|.....+..+..+++|++|++++|.+.. ++. ++.+++|++|++++|...
T Consensus 120 n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~------ 190 (347)
T 4fmz_A 120 DNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQIE------ 190 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECTTSCCC------
T ss_pred CcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCC-chh--hccCCCCCEEEccCCccc------
Confidence 76666444666667777777666433333346666677777776665332 332 566666666666654210
Q ss_pred ccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhc
Q 002037 579 ANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEK 658 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 658 (977)
.+..+..+++|+.|++..+.....+.
T Consensus 191 ------~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------------------------------ 216 (347)
T 4fmz_A 191 ------DISPLASLTSLHYFTAYVNQITDITP------------------------------------------------ 216 (347)
T ss_dssp ------CCGGGGGCTTCCEEECCSSCCCCCGG------------------------------------------------
T ss_pred ------ccccccCCCccceeecccCCCCCCch------------------------------------------------
Confidence 11224455555555555443222111
Q ss_pred cceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccc
Q 002037 659 TEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKR 738 (977)
Q Consensus 659 L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~ 738 (977)
...+++|+.|++++|.+....+ +..+++|++|++++|. +..+..+. .+++
T Consensus 217 -------------------~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~~~~-------~l~~ 266 (347)
T 4fmz_A 217 -------------------VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-ISDINAVK-------DLTK 266 (347)
T ss_dssp -------------------GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCCGGGT-------TCTT
T ss_pred -------------------hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cCCChhHh-------cCCC
Confidence 2234555555555555444433 4455566666665552 22222222 3677
Q ss_pred cceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhcc
Q 002037 739 LRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGA 818 (977)
Q Consensus 739 L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~ 818 (977)
|+.|+++++ .++.+ .....+++|+.|++++| .+... .+..+..+++|++|++++|. +..++..
T Consensus 267 L~~L~l~~n-~l~~~----~~~~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~-l~~~~~~--------- 329 (347)
T 4fmz_A 267 LKMLNVGSN-QISDI----SVLNNLSQLNSLFLNNN-QLGNE-DMEVIGGLTNLTTLFLSQNH-ITDIRPL--------- 329 (347)
T ss_dssp CCEEECCSS-CCCCC----GGGGGCTTCSEEECCSS-CCCGG-GHHHHHTCTTCSEEECCSSS-CCCCGGG---------
T ss_pred cCEEEccCC-ccCCC----hhhcCCCCCCEEECcCC-cCCCc-ChhHhhccccCCEEEccCCc-cccccCh---------
Confidence 777777776 34432 23456788888888886 34444 23445678888888888886 3333221
Q ss_pred ccccccCCCCCCCcCCCccEEEecccc
Q 002037 819 AQERNVSSAPQPMFFPNLKKLLIGKCN 845 (977)
Q Consensus 819 ~~~~~l~~l~~~~~~~~L~~L~l~~c~ 845 (977)
..+++|++|++++|+
T Consensus 330 ------------~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 330 ------------ASLSKMDSADFANQV 344 (347)
T ss_dssp ------------GGCTTCSEESSSCC-
T ss_pred ------------hhhhccceeehhhhc
Confidence 247888888888764
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.91 E-value=5e-23 Score=243.27 Aligned_cols=444 Identities=16% Similarity=0.147 Sum_probs=299.3
Q ss_pred CCcCCCCCcccccCccEEEeccCCCccCC--CCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCc
Q 002037 408 PGMKKGWPREDLQNCEKLSLMDGNVTALP--DQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSL 485 (977)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~ 485 (977)
+.....+|..-.++++.|++++|.+..++ .+..+++|++|++++|.+..+++..|.++++|++|++++|.+..+|..
T Consensus 40 ~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~- 118 (562)
T 3a79_B 40 NRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC- 118 (562)
T ss_dssp TSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC-
T ss_pred CCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc-
Confidence 33344555544578999999999999887 367899999999999999998888899999999999999999999987
Q ss_pred ccCCCCCeEecCCCCCCC---CccccCCCCccEEEccCCCCcccCccccCCCCC--CEEEcCCCCC--CCccChhhhhcC
Q 002037 486 PCLEKLRSLHLENTHLND---ASLIREFGELEVLILKGSRIVELPNGIGTVSNL--KLLDLSNNLF--LQVIPPNVISKL 558 (977)
Q Consensus 486 ~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~i~~L 558 (977)
.+++|++|++++|.+.. |..++++++|++|++++|.+... .+..+++| ++|++++|.+ ....|.. +..+
T Consensus 119 -~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~-l~~l 194 (562)
T 3a79_B 119 -PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETES-LQIP 194 (562)
T ss_dssp -CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCE-EEEC
T ss_pred -ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCccc-cccc
Confidence 89999999999999876 47899999999999999998763 35556666 9999999987 5666655 5555
Q ss_pred ccccE--EEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcc--ccc--cCCCCCCCCcceEEEEecCcccC
Q 002037 559 SQLEE--LYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTK--VLS--VDFDGPWTNLKRFRVCVNDDYWE 632 (977)
Q Consensus 559 ~~L~~--L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~--~~~~~~~~~L~~L~l~~~~~~~~ 632 (977)
.. +. +++.++.... ......+..+++|+.++++.+... ..+ ...+..+++|+.+.+..+..
T Consensus 195 ~~-~~l~l~l~~n~~~~---------~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l--- 261 (562)
T 3a79_B 195 NT-TVLHLVFHPNSLFS---------VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET--- 261 (562)
T ss_dssp CE-EEEEEEECSSSCCC---------CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE---
T ss_pred Cc-ceEEEEecCccchh---------hhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC---
Confidence 42 23 3444432111 111234566788999999876311 000 11234467777777765421
Q ss_pred CCCcceeeecccc-hhhHHHHHHHHhccceeEecCCCCcccccc-cc---cCCCCCccEEeeccccccccccCCccccc-
Q 002037 633 IAPKRSMHLKNLS-NSIASWVKLLLEKTEYLTLTRSSNLQDIGE-ID---VQGFTGLMCMHLRACSMQRIFHSNFYPTV- 706 (977)
Q Consensus 633 ~~~~~~l~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-l~---~~~l~~L~~L~L~~~~~~~~~~~~~~~~l- 706 (977)
.+.. ...+.+. ...+|+.|++.++.-...++. +. ...++.|+.+++..+.+ .+|...+..+
T Consensus 262 ---------~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~ 328 (562)
T 3a79_B 262 ---------TWKCSVKLFQFF--WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVF 328 (562)
T ss_dssp ---------CHHHHHHHHHHH--TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHH
T ss_pred ---------cHHHHHHHHHhh--hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhh
Confidence 1100 0111111 124899999987643223322 11 13344444444544443 2222222222
Q ss_pred --ccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccc-h
Q 002037 707 --QILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFS-R 783 (977)
Q Consensus 707 --~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~-~ 783 (977)
.+|+.|+++++.-. ...... .+++|+.|+++++. ++.. .+...+.+++|+.|+++++ +++.++. +
T Consensus 329 ~~~~L~~L~l~~n~~~-~~~~~~-------~l~~L~~L~l~~n~-l~~~--~~~~~~~l~~L~~L~L~~N-~l~~~~~~~ 396 (562)
T 3a79_B 329 AEMNIKMLSISDTPFI-HMVCPP-------SPSSFTFLNFTQNV-FTDS--VFQGCSTLKRLQTLILQRN-GLKNFFKVA 396 (562)
T ss_dssp HTCCCSEEEEESSCCC-CCCCCS-------SCCCCCEEECCSSC-CCTT--TTTTCCSCSSCCEEECCSS-CCCBTTHHH
T ss_pred ccCcceEEEccCCCcc-cccCcc-------CCCCceEEECCCCc-cccc--hhhhhcccCCCCEEECCCC-CcCCcccch
Confidence 56999999998532 211112 48999999999974 3321 1234567899999999995 6776532 2
Q ss_pred hHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceeccccccccc-ccc
Q 002037 784 TLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNL-KQL 862 (977)
Q Consensus 784 ~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l-~~L 862 (977)
..+..+++|+.|+++++.....++... ...+++|+.|++++|.--... ...+ ++|
T Consensus 397 ~~~~~l~~L~~L~l~~N~l~~~~~~~~-------------------~~~l~~L~~L~l~~n~l~~~~-----~~~l~~~L 452 (562)
T 3a79_B 397 LMTKNMSSLETLDVSLNSLNSHAYDRT-------------------CAWAESILVLNLSSNMLTGSV-----FRCLPPKV 452 (562)
T ss_dssp HTTTTCTTCCEEECTTSCCBSCCSSCC-------------------CCCCTTCCEEECCSSCCCGGG-----GSSCCTTC
T ss_pred hhhcCCCCCCEEECCCCcCCCccChhh-------------------hcCcccCCEEECCCCCCCcch-----hhhhcCcC
Confidence 345789999999999987443233211 124799999999998633222 2334 699
Q ss_pred cEEEEecccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCC
Q 002037 863 EELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCP 931 (977)
Q Consensus 863 ~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~ 931 (977)
++|++++| .++.+ +.....+++|+.|+++++ +++.++...+. .+++|++|+++++|
T Consensus 453 ~~L~L~~N-~l~~i---------p~~~~~l~~L~~L~L~~N-~l~~l~~~~~~--~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 453 KVLDLHNN-RIMSI---------PKDVTHLQALQELNVASN-QLKSVPDGVFD--RLTSLQYIWLHDNP 508 (562)
T ss_dssp SEEECCSS-CCCCC---------CTTTTSSCCCSEEECCSS-CCCCCCTTSTT--TCTTCCCEECCSCC
T ss_pred CEEECCCC-cCccc---------ChhhcCCCCCCEEECCCC-CCCCCCHHHHh--cCCCCCEEEecCCC
Confidence 99999998 56655 444568999999999995 58888876333 47999999999876
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.7e-22 Score=230.41 Aligned_cols=140 Identities=19% Similarity=0.242 Sum_probs=92.6
Q ss_pred ccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCC
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 498 (977)
+++++.|+++++.+..+|.+..+++|++|++++|.+..++ +..+++|++|++++|.+..++ ++.+++|++|++++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 5667777777777666665566677777777777666654 556677777777777766654 66667777777777
Q ss_pred CCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 499 THLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 499 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
|.+...+ ++.+++|++|++++|.++.+| ++.+++|++|++++|.....++ ++.+++|++|+++++
T Consensus 116 N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 116 NKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFN 180 (457)
T ss_dssp SCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSS
T ss_pred CcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCC
Confidence 7666632 666677777777777666654 5666677777777765455442 556666777766665
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=2.1e-22 Score=222.72 Aligned_cols=280 Identities=23% Similarity=0.304 Sum_probs=201.4
Q ss_pred cccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 418 DLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 418 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
.+++++.|++++|.+..++.+..+++|++|++++|.+..++ .+.++++|++|++++|.+..++. +..+++|++|+++
T Consensus 64 ~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 64 YLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred hcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch--HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 37899999999999998888889999999999999998875 37899999999999999998877 8999999999999
Q ss_pred CCC-CCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 498 NTH-LNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 498 ~~~-l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
+|. +..+..+..+++|++|++++|.+..++. +..+++|++|++++|.+. .++. +..+++|++|+++++...
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~---- 212 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIE-DISP--LASLTSLHYFTAYVNQIT---- 212 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCC-CCGG--GGGCTTCCEEECCSSCCC----
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccc-cccc--ccCCCccceeecccCCCC----
Confidence 996 4457779999999999999999998877 899999999999999854 4554 789999999999886321
Q ss_pred ccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHH
Q 002037 577 ETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLL 656 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 656 (977)
....+..+++|+.|+++.+.....+. +..+++|+.|++..+
T Consensus 213 --------~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n----------------------------- 253 (347)
T 4fmz_A 213 --------DITPVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTN----------------------------- 253 (347)
T ss_dssp --------CCGGGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-----------------------------
T ss_pred --------CCchhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCC-----------------------------
Confidence 12237788899999998776544332 223333333333221
Q ss_pred hccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccc
Q 002037 657 EKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGL 736 (977)
Q Consensus 657 ~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~ 736 (977)
.+..++ ....+++|+.|++++|.+.. +..+. .+
T Consensus 254 ------------~l~~~~--~~~~l~~L~~L~l~~n~l~~--------------------------~~~~~-------~l 286 (347)
T 4fmz_A 254 ------------QISDIN--AVKDLTKLKMLNVGSNQISD--------------------------ISVLN-------NL 286 (347)
T ss_dssp ------------CCCCCG--GGTTCTTCCEEECCSSCCCC--------------------------CGGGG-------GC
T ss_pred ------------ccCCCh--hHhcCCCcCEEEccCCccCC--------------------------Chhhc-------CC
Confidence 111111 12234555555555553332 21112 26
Q ss_pred cccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccc
Q 002037 737 KRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCD 801 (977)
Q Consensus 737 ~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 801 (977)
++|+.|++++|. ++.. .......+++|+.|++++|+ ++.+++ ...+++|++|++++|.
T Consensus 287 ~~L~~L~L~~n~-l~~~--~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 287 SQLNSLFLNNNQ-LGNE--DMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV 344 (347)
T ss_dssp TTCSEEECCSSC-CCGG--GHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred CCCCEEECcCCc-CCCc--ChhHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence 677777777763 2221 11223467888888888865 666543 4678889999888875
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.1e-22 Score=232.02 Aligned_cols=311 Identities=18% Similarity=0.228 Sum_probs=212.8
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEc
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLIL 518 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l 518 (977)
.++++|++|++++|.+..++ .+..+++|++|++++|.+..+| ++.+++|++|++++|.+...+ ++.+++|++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred hHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 45789999999999999886 3789999999999999999986 899999999999999998853 889999999999
Q ss_pred cCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEE
Q 002037 519 KGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVL 598 (977)
Q Consensus 519 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 598 (977)
++|.++.+| ++.+++|++|++++|.+.. ++ ++.+++|++|++++|.... .+ .+..+++|+.|
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~-----------~~-~~~~l~~L~~L 175 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKIT-----------KL-DVTPQTQLTTL 175 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCC-----------CC-CCTTCTTCCEE
T ss_pred CCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccc-----------cc-ccccCCcCCEE
Confidence 999999986 8999999999999998554 54 7889999999998873211 11 46778899999
Q ss_pred EeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCccccccccc
Q 002037 599 YIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDV 678 (977)
Q Consensus 599 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 678 (977)
+++.+.....+ +..+++|+.|++..+. +.. +..
T Consensus 176 ~ls~n~l~~l~---l~~l~~L~~L~l~~N~-----------------------------------------l~~---~~l 208 (457)
T 3bz5_A 176 DCSFNKITELD---VSQNKLLNRLNCDTNN-----------------------------------------ITK---LDL 208 (457)
T ss_dssp ECCSSCCCCCC---CTTCTTCCEEECCSSC-----------------------------------------CSC---CCC
T ss_pred ECCCCccceec---cccCCCCCEEECcCCc-----------------------------------------CCe---ecc
Confidence 99988766654 4456666666654432 111 123
Q ss_pred CCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeeccc
Q 002037 679 QGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNH 758 (977)
Q Consensus 679 ~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~ 758 (977)
..+++|+.|++++|.+.+. | +..+++|+.|+++++. +...+ .. .+++|+.|.+.+
T Consensus 209 ~~l~~L~~L~Ls~N~l~~i-p---~~~l~~L~~L~l~~N~-l~~~~-~~-------~l~~L~~L~l~~------------ 263 (457)
T 3bz5_A 209 NQNIQLTFLDCSSNKLTEI-D---VTPLTQLTYFDCSVNP-LTELD-VS-------TLSKLTTLHCIQ------------ 263 (457)
T ss_dssp TTCTTCSEEECCSSCCSCC-C---CTTCTTCSEEECCSSC-CSCCC-CT-------TCTTCCEEECTT------------
T ss_pred ccCCCCCEEECcCCccccc-C---ccccCCCCEEEeeCCc-CCCcC-HH-------HCCCCCEEeccC------------
Confidence 4466777777777766653 3 4566677777776652 22211 11 256666655443
Q ss_pred ccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccE
Q 002037 759 SVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKK 838 (977)
Q Consensus 759 ~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~ 838 (977)
.+|+.|++++|..+..++ ...+++|+.|++++|..+..++... ..+..+. ...+++|+.
T Consensus 264 -----n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~-----------~~L~~L~-l~~~~~L~~ 322 (457)
T 3bz5_A 264 -----TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQA-----------AGITELD-LSQNPKLVY 322 (457)
T ss_dssp -----CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTT-----------CCCSCCC-CTTCTTCCE
T ss_pred -----CCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCC-----------CcceEec-hhhcccCCE
Confidence 234555555555554442 1355666777777666655554311 1111111 223567777
Q ss_pred EEeccccCcceecccccccccccccEEEEecc
Q 002037 839 LLIGKCNKMKRVLSLTNAHNLKQLEELTVASC 870 (977)
Q Consensus 839 L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C 870 (977)
|+++++ +++.+ .+.++++|+.|+++++
T Consensus 323 L~L~~N-~l~~l----~l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 323 LYLNNT-ELTEL----DVSHNTKLKSLSCVNA 349 (457)
T ss_dssp EECTTC-CCSCC----CCTTCTTCSEEECCSS
T ss_pred EECCCC-ccccc----ccccCCcCcEEECCCC
Confidence 777765 34443 2566778888887765
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.89 E-value=1.8e-21 Score=234.59 Aligned_cols=475 Identities=17% Similarity=0.140 Sum_probs=284.8
Q ss_pred CCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC-C-ccc
Q 002037 431 NVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND-A-SLI 507 (977)
Q Consensus 431 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-~-~~i 507 (977)
++..+|... .+.++.|++++|.++.+++..|.++++|++|+|++|.++.+|+ .|.++++|++|+|++|.++. + ..+
T Consensus 42 ~l~~vP~~l-p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 42 NFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp CCSSCCSSS-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred CcCccCCCC-CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 456666422 2479999999999999999889999999999999999999977 68999999999999999988 4 568
Q ss_pred cCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCC-ccChhhhhcCccccEEEccCCcCCccccccccCcCcc
Q 002037 508 REFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQ-VIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNAR 585 (977)
Q Consensus 508 ~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 585 (977)
.++++|++|++++|+++.+|.. ++++++|++|++++|.+.. .+|.. ++.+++|++|+++++...... ...
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-------~~~ 192 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIY-------CTD 192 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEEC-------GGG
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCccccccc-------ccc
Confidence 9999999999999999999865 8999999999999998654 34554 899999999999987432111 112
Q ss_pred ccccccCC-CCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEe
Q 002037 586 FSEVASLT-RLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTL 664 (977)
Q Consensus 586 ~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l 664 (977)
+..+..+. .+..++++.+.....+..... ...+..+.+..+.... ..+......+..++...+
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~---------------~~~~~~~~~l~~l~~~~l 256 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSL---------------NVMKTCIQGLAGLEVHRL 256 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSH---------------HHHHHHHHTTTTCEEEEE
T ss_pred ccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccc---------------cccchhhcCCcccccccc
Confidence 22233332 223455555554444433321 2233444444331100 000000011122221111
Q ss_pred --cCCCCccccc------------------------------ccccCCCCCccEEeeccccccccccCCcccccccceEE
Q 002037 665 --TRSSNLQDIG------------------------------EIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEEL 712 (977)
Q Consensus 665 --~~~~~~~~~~------------------------------~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 712 (977)
........+. ......+.+++.+.+.++.+....+ +.....|+.|
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---~~~~~~L~~L 333 (635)
T 4g8a_A 257 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHL 333 (635)
T ss_dssp EEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG---GGSCCCCSEE
T ss_pred cccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc---cccchhhhhh
Confidence 1111111110 0111234455555555554333322 2334456666
Q ss_pred EEEeecccceeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCC
Q 002037 713 HVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNL 792 (977)
Q Consensus 713 ~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L 792 (977)
++.++..- .+. ...++.|+.+.+.++..-. ......+++|+.|.+++..--.....+.....+.+|
T Consensus 334 ~l~~~~~~-~~~--------~~~l~~L~~l~l~~n~~~~-----~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 334 ELVNCKFG-QFP--------TLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp EEESCEES-SCC--------CCBCTTCCEEEEESCCSCC-----BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred hccccccc-CcC--------cccchhhhhcccccccCCC-----Ccccccccccccchhhccccccccccccchhhhhhh
Confidence 66655211 110 0125666666666543211 123345788888888774322111122334566778
Q ss_pred ceEEecccccccceeccchhhhhhccccc-cccCC---CCCCCcCCCccEEEeccccCcceecccccccccccccEEEEe
Q 002037 793 EDLSILKCDLMEEIVSVDEAEVEQGAAQE-RNVSS---APQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVA 868 (977)
Q Consensus 793 ~~L~l~~c~~l~~i~~~~~~~~~~~~~~~-~~l~~---l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~ 868 (977)
+.|++..+...................+. ..... ......+++|+.+++..+. +... .......+++|+.|+++
T Consensus 400 ~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~-~~~~~~~~~~L~~L~Ls 477 (635)
T 4g8a_A 400 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMA 477 (635)
T ss_dssp CEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTTCCEEECT
T ss_pred hhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccc-cccc-cccccccchhhhhhhhh
Confidence 88877766432211111000000000000 00001 1112346777888887754 3332 23456778999999999
Q ss_pred cccccceeeecccccccccccccccccceeeccccccccccccCccccccCCCccEEEeccCCCCCCCCC-CCCCCcccc
Q 002037 869 SCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDSVYNGEIAALRWPSLEELKVWDCPKLMKLPL-DTRSAPKLE 947 (977)
Q Consensus 869 ~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~sL~~L~i~~C~~L~~lp~-~~~~~~~L~ 947 (977)
+|.....+. +..+..+++|+.|+|++| +|+.++...+. .+++|++|+++++ +++.+|. ....+++|+
T Consensus 478 ~N~~~~~~~--------~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~--~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 478 GNSFQENFL--------PDIFTELRNLTFLDLSQC-QLEQLSPTAFN--SLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TCEEGGGEE--------CSCCTTCTTCCEEECTTS-CCCEECTTTTT--TCTTCCEEECTTS-CCCBCCCGGGTTCTTCC
T ss_pred hcccccccC--------chhhhhccccCEEECCCC-ccCCcChHHHc--CCCCCCEEECCCC-cCCCCChhHHhCCCCCC
Confidence 887665442 445678899999999997 58888765544 3799999999985 6888865 467889999
Q ss_pred ccccchhhhhhccc
Q 002037 948 TFKAHSAWFEKLQW 961 (977)
Q Consensus 948 ~l~~~~~~~~~l~~ 961 (977)
.|+++..-...+..
T Consensus 546 ~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 546 VLDYSLNHIMTSKK 559 (635)
T ss_dssp EEECTTSCCCBCCS
T ss_pred EEECCCCcCCCCCH
Confidence 99998766655544
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=2.7e-21 Score=217.35 Aligned_cols=284 Identities=15% Similarity=0.214 Sum_probs=190.5
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccE
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEV 515 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~ 515 (977)
..+++++.|++.++.+..++...|..+++|++|++++|.+..+++ .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 356788899999988888888888899999999999999888776 78899999999999998887 456888999999
Q ss_pred EEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCC
Q 002037 516 LILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTR 594 (977)
Q Consensus 516 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 594 (977)
|++++|.+..+|.. ++++++|++|++++|.+.. +++..++.+++|++|+++++.... ..+..+++
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~l~~ 187 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTH-------------VDLSLIPS 187 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSB-------------CCGGGCTT
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCc-cChhhccCCCCCCEEECCCCcCCc-------------cccccccc
Confidence 99999999999877 4889999999999987554 444448889999999988763211 13556778
Q ss_pred CcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCccccc
Q 002037 595 LTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIG 674 (977)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 674 (977)
|+.|+++.+.....+ ...+|+.|+ +.++. +..+
T Consensus 188 L~~L~l~~n~l~~~~-----~~~~L~~L~----------------------------------------l~~n~-l~~~- 220 (390)
T 3o6n_A 188 LFHANVSYNLLSTLA-----IPIAVEELD----------------------------------------ASHNS-INVV- 220 (390)
T ss_dssp CSEEECCSSCCSEEE-----CCSSCSEEE----------------------------------------CCSSC-CCEE-
T ss_pred cceeecccccccccC-----CCCcceEEE----------------------------------------CCCCe-eeec-
Confidence 888888765543221 122344443 33321 1111
Q ss_pred ccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceee
Q 002037 675 EIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIW 754 (977)
Q Consensus 675 ~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~ 754 (977)
+...+++|+.|++++|.+... ..+..+++|++|+++++. +....+. ....+++|+.|++.++ .++.+.
T Consensus 221 --~~~~~~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~Ls~n~-l~~~~~~-----~~~~l~~L~~L~L~~n-~l~~~~ 288 (390)
T 3o6n_A 221 --RGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNE-LEKIMYH-----PFVKMQRLERLYISNN-RLVALN 288 (390)
T ss_dssp --ECCCCSSCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSC-CCEEESG-----GGTTCSSCCEEECCSS-CCCEEE
T ss_pred --cccccccccEEECCCCCCccc---HHHcCCCCccEEECCCCc-CCCcChh-----HccccccCCEEECCCC-cCcccC
Confidence 112356777888877766553 235667777777777663 2222110 0113677777777775 344432
Q ss_pred ecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccc
Q 002037 755 KGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCD 801 (977)
Q Consensus 755 ~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 801 (977)
.....+++|+.|++++| ++..+++ .+..+++|++|++++|.
T Consensus 289 ---~~~~~l~~L~~L~L~~n-~l~~~~~--~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 289 ---LYGQPIPTLKVLDLSHN-HLLHVER--NQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ---CSSSCCTTCCEEECCSS-CCCCCGG--GHHHHTTCSEEECCSSC
T ss_pred ---cccCCCCCCCEEECCCC-cceecCc--cccccCcCCEEECCCCc
Confidence 22245677777777775 4555422 23556677777776654
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=6.4e-21 Score=219.39 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=132.8
Q ss_pred CCCCCcccccCccEEEeccCCCccCC--CCCCCCCccEEEccCCCCC-CCChhHHhcCCCccEEEccCCcCCCC-CCCcc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALP--DQPKCPRLTTLFLQNNPFA-DIPNAFFEHTREIKNLDLSSTNISSL-APSLP 486 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~ 486 (977)
...+|. -.+++++|++++|.+..++ .+.++++|++|++++|.+. .++...|.++++|++|++++|.+..+ |..++
T Consensus 22 l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 100 (455)
T 3v47_A 22 LHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFN 100 (455)
T ss_dssp CSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTT
T ss_pred cccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhcc
Confidence 444454 3478999999999998763 3578999999999999876 56677789999999999999999977 66899
Q ss_pred cCCCCCeEecCCCCCCC--Ccc--ccCCCCccEEEccCCCCccc-Ccc-ccCCCCCCEEEcCCCCCCCccChhhhhcC--
Q 002037 487 CLEKLRSLHLENTHLND--ASL--IREFGELEVLILKGSRIVEL-PNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKL-- 558 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L-- 558 (977)
.+++|++|++++|.+.. +.. ++.+++|++|++++|.+..+ |.. ++++++|++|++++|.+....|.. +..+
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~ 179 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQG 179 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTT
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhcccc
Confidence 99999999999999987 444 89999999999999999987 555 899999999999999876665554 6666
Q ss_pred ccccEEEccCCc
Q 002037 559 SQLEELYVGNSF 570 (977)
Q Consensus 559 ~~L~~L~l~~~~ 570 (977)
.+|+.|+++++.
T Consensus 180 ~~L~~L~l~~n~ 191 (455)
T 3v47_A 180 KHFTLLRLSSIT 191 (455)
T ss_dssp CEEEEEECTTCB
T ss_pred ccccccccccCc
Confidence 688999998764
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=2.1e-21 Score=221.31 Aligned_cols=344 Identities=18% Similarity=0.125 Sum_probs=176.7
Q ss_pred cCccEEEeccCCCccCCC-CCCCCCccEEEccCCCCCCCChhHHhcCCC-------------ccEEEccCCcCCCCCCCc
Q 002037 420 QNCEKLSLMDGNVTALPD-QPKCPRLTTLFLQNNPFADIPNAFFEHTRE-------------IKNLDLSSTNISSLAPSL 485 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------Lr~L~l~~~~~~~lp~~~ 485 (977)
..++.+.++++.+..+|. +.++++|+.|++++|.+....+..++.+.. +++|+++++.++.+|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~- 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL- 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC-
Confidence 456667777777766664 456677777777766644222222333333 47777777777766652
Q ss_pred ccCCCCCeEecCCCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEE
Q 002037 486 PCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELY 565 (977)
Q Consensus 486 ~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~ 565 (977)
.++|++|++++|.+...+. .+.+|++|++++|.+..+|.. .++|++|++++|.+. .+| . ++.+++|++|+
T Consensus 90 --~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~-~lp-~-~~~l~~L~~L~ 159 (454)
T 1jl5_A 90 --PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLE-KLP-E-LQNSSFLKIID 159 (454)
T ss_dssp --CTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCS-SCC-C-CTTCTTCCEEE
T ss_pred --cCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCC-CCc-c-cCCCCCCCEEE
Confidence 2567777777777666221 236677777777776666542 156777777777644 366 3 67777777777
Q ss_pred ccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccc
Q 002037 566 VGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLS 645 (977)
Q Consensus 566 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~ 645 (977)
++++.... ++ . ...+|+.|+++.+.....+ .++.+++|+.|++..+.... +.
T Consensus 160 l~~N~l~~-lp-----------~--~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~------------l~ 211 (454)
T 1jl5_A 160 VDNNSLKK-LP-----------D--LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK------------LP 211 (454)
T ss_dssp CCSSCCSC-CC-----------C--CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS------------CC
T ss_pred CCCCcCcc-cC-----------C--CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc------------CC
Confidence 76653211 00 0 1236777777766655543 24556666666665543211 00
Q ss_pred hhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeee
Q 002037 646 NSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFC 725 (977)
Q Consensus 646 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 725 (977)
. ..++|+.|++.++ .+..++. ...+++|+.|++++|.+..... .+++|+.|+++++. +..++.
T Consensus 212 ~--------~~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~L~l~~N~-l~~l~~ 274 (454)
T 1jl5_A 212 D--------LPLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPD-----LPPSLEALNVRDNY-LTDLPE 274 (454)
T ss_dssp C--------CCTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCS-----CCTTCCEEECCSSC-CSCCCC
T ss_pred C--------CcCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcccc-----cccccCEEECCCCc-ccccCc
Confidence 0 0135666666654 3334442 3457777777777776654321 23667777776653 222211
Q ss_pred ccccccccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccc
Q 002037 726 LEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEE 805 (977)
Q Consensus 726 ~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~ 805 (977)
.+++|+.|+++++. ++.+. ...++|+.|++++| ++..++. ..++|++|+++++. +..
T Consensus 275 ---------~~~~L~~L~ls~N~-l~~l~------~~~~~L~~L~l~~N-~l~~i~~-----~~~~L~~L~Ls~N~-l~~ 331 (454)
T 1jl5_A 275 ---------LPQSLTFLDVSENI-FSGLS------ELPPNLYYLNASSN-EIRSLCD-----LPPSLEELNVSNNK-LIE 331 (454)
T ss_dssp ---------CCTTCCEEECCSSC-CSEES------CCCTTCCEEECCSS-CCSEECC-----CCTTCCEEECCSSC-CSC
T ss_pred ---------ccCcCCEEECcCCc-cCccc------CcCCcCCEEECcCC-cCCcccC-----CcCcCCEEECCCCc-ccc
Confidence 24677777777653 33321 01256777777664 4444311 11467777776653 222
Q ss_pred eeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEeccc
Q 002037 806 IVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCN 871 (977)
Q Consensus 806 i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~ 871 (977)
++. .+++|+.|++++| .++.++. .+++|++|+++++.
T Consensus 332 lp~-----------------------~~~~L~~L~L~~N-~l~~lp~-----~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 332 LPA-----------------------LPPRLERLIASFN-HLAEVPE-----LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCC-----------------------CCTTCCEEECCSS-CCSCCCC-----CCTTCCEEECCSSC
T ss_pred ccc-----------------------cCCcCCEEECCCC-ccccccc-----hhhhccEEECCCCC
Confidence 211 2567777777765 3444322 35677777777664
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=8.5e-21 Score=225.30 Aligned_cols=305 Identities=14% Similarity=0.198 Sum_probs=217.4
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccE
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEV 515 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~ 515 (977)
..+.+++.+++.+|.+..+|...|.++++|++|++++|.+..+++ .++.+++|++|+|++|.+.. +..++.+++|++
T Consensus 48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 356788999999999988999889999999999999999988776 88999999999999999887 456789999999
Q ss_pred EEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCC
Q 002037 516 LILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTR 594 (977)
Q Consensus 516 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 594 (977)
|++++|.+..+|.. ++++++|++|++++|.+....| ..++.+++|++|++++|.... ..+..+++
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-------------~~~~~l~~ 193 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTH-------------VDLSLIPS 193 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSCCSB-------------CCGGGCTT
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCCCCC-------------cChhhhhh
Confidence 99999999999887 4899999999999998655444 448899999999998864211 13566778
Q ss_pred CcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCccccc
Q 002037 595 LTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIG 674 (977)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 674 (977)
|+.|+++.+.....+ ...+|+.|++..+. +..+
T Consensus 194 L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~-----------------------------------------l~~~- 226 (597)
T 3oja_B 194 LFHANVSYNLLSTLA-----IPIAVEELDASHNS-----------------------------------------INVV- 226 (597)
T ss_dssp CSEEECCSSCCSEEE-----CCTTCSEEECCSSC-----------------------------------------CCEE-
T ss_pred hhhhhcccCcccccc-----CCchhheeeccCCc-----------------------------------------cccc-
Confidence 888888766543321 12344444443221 1111
Q ss_pred ccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceee
Q 002037 675 EIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIW 754 (977)
Q Consensus 675 ~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~ 754 (977)
.....++|+.|++++|.+.+. ..+..+++|+.|+++++.- ....+. ....+++|+.|+|+++ .++.+.
T Consensus 227 --~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l-~~~~~~-----~~~~l~~L~~L~Ls~N-~l~~l~ 294 (597)
T 3oja_B 227 --RGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNEL-EKIMYH-----PFVKMQRLERLYISNN-RLVALN 294 (597)
T ss_dssp --ECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCC-CEEESG-----GGTTCSSCCEEECTTS-CCCEEE
T ss_pred --ccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCcc-CCCCHH-----HhcCccCCCEEECCCC-CCCCCC
Confidence 112246777888888766653 3466778888888877642 222211 1123788888888886 455542
Q ss_pred ecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCC
Q 002037 755 KGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFP 834 (977)
Q Consensus 755 ~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 834 (977)
.....+++|+.|++++| .+..++ ..+..+++|+.|++++|.. ..++ ...++
T Consensus 295 ---~~~~~l~~L~~L~Ls~N-~l~~i~--~~~~~l~~L~~L~L~~N~l-~~~~----------------------~~~~~ 345 (597)
T 3oja_B 295 ---LYGQPIPTLKVLDLSHN-HLLHVE--RNQPQFDRLENLYLDHNSI-VTLK----------------------LSTHH 345 (597)
T ss_dssp ---CSSSCCTTCCEEECCSS-CCCCCG--GGHHHHTTCSEEECCSSCC-CCCC----------------------CCTTC
T ss_pred ---cccccCCCCcEEECCCC-CCCccC--cccccCCCCCEEECCCCCC-CCcC----------------------hhhcC
Confidence 23356889999999986 566653 3357789999999998863 2221 12578
Q ss_pred CccEEEecccc
Q 002037 835 NLKKLLIGKCN 845 (977)
Q Consensus 835 ~L~~L~l~~c~ 845 (977)
+|+.|+|++++
T Consensus 346 ~L~~L~l~~N~ 356 (597)
T 3oja_B 346 TLKNLTLSHND 356 (597)
T ss_dssp CCSEEECCSSC
T ss_pred CCCEEEeeCCC
Confidence 99999998876
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=5.3e-21 Score=214.95 Aligned_cols=301 Identities=18% Similarity=0.207 Sum_probs=232.3
Q ss_pred ccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEe
Q 002037 419 LQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLH 495 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 495 (977)
+.+++.+++.++.+..+|. +..+++|++|++++|.+..++...|..+++|++|++++|.+..+++ .++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 6889999999999999887 4678999999999999999888888999999999999999998876 589999999999
Q ss_pred cCCCCCCC-Ccc-ccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCC
Q 002037 496 LENTHLND-ASL-IREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGD 572 (977)
Q Consensus 496 L~~~~l~~-~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~ 572 (977)
+++|.+.. +.. ++.+++|++|++++|.+..++. .++.+++|++|++++|.+. .++ ++.+++|++|+++++..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l- 198 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLL- 198 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCC-
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeecccccc-
Confidence 99999988 444 6899999999999999998865 4899999999999999854 444 57799999999987632
Q ss_pred ccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHH
Q 002037 573 WEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWV 652 (977)
Q Consensus 573 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 652 (977)
..+....+|+.|+++.+.....+... .++|+.|++..+.
T Consensus 199 --------------~~~~~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~------------------------ 237 (390)
T 3o6n_A 199 --------------STLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN------------------------ 237 (390)
T ss_dssp --------------SEEECCSSCSEEECCSSCCCEEECCC---CSSCCEEECCSSC------------------------
T ss_pred --------------cccCCCCcceEEECCCCeeeeccccc---cccccEEECCCCC------------------------
Confidence 33455568999999988766554332 3455555544331
Q ss_pred HHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccc
Q 002037 653 KLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGE 732 (977)
Q Consensus 653 ~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~ 732 (977)
+...+ ....+++|+.|++++|.+....+ ..+..+++|+.|+++++. +..++...
T Consensus 238 -----------------l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~----- 291 (390)
T 3o6n_A 238 -----------------LTDTA--WLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNR-LVALNLYG----- 291 (390)
T ss_dssp -----------------CCCCG--GGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECCSSC-CCEEECSS-----
T ss_pred -----------------CcccH--HHcCCCCccEEECCCCcCCCcCh-hHccccccCCEEECCCCc-CcccCccc-----
Confidence 22222 23457888889998887776543 346778889999998873 34433221
Q ss_pred cccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccc
Q 002037 733 QAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCD 801 (977)
Q Consensus 733 ~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 801 (977)
..+++|+.|+++++ .++.+. .....+++|+.|++++|+ ++.++ ...+++|+.|++++++
T Consensus 292 -~~l~~L~~L~L~~n-~l~~~~---~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 292 -QPIPTLKVLDLSHN-HLLHVE---RNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp -SCCTTCCEEECCSS-CCCCCG---GGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSC
T ss_pred -CCCCCCCEEECCCC-cceecC---ccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCC
Confidence 24899999999988 455432 234578999999999964 66653 3578999999999875
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=9e-21 Score=219.38 Aligned_cols=313 Identities=19% Similarity=0.188 Sum_probs=178.7
Q ss_pred EEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCCCCCC
Q 002037 424 KLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLENTHLN 502 (977)
Q Consensus 424 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l~ 502 (977)
.+..+++.+..+|... .++++.|++++|.+..++...|.++++|++|++++|.+..+ |..+..+++|++|+|++|.+.
T Consensus 15 ~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 93 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93 (477)
T ss_dssp EEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC
Confidence 3444555555565422 35677777777777777666677777777777777777766 456777777777777777776
Q ss_pred C-C-ccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccc
Q 002037 503 D-A-SLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETA 579 (977)
Q Consensus 503 ~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 579 (977)
. + ..++++++|++|++++|.+..+ |..+..+++|++|++++|.+....|.. +..+++|++|+++++...
T Consensus 94 ~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~------- 165 (477)
T 2id5_A 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLT------- 165 (477)
T ss_dssp SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCS-------
T ss_pred ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCc-------
Confidence 6 3 3467777777777777777755 345777777777777777644433333 677777777777765321
Q ss_pred cCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhcc
Q 002037 580 NGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKT 659 (977)
Q Consensus 580 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L 659 (977)
......+..+++|+.|++..+.....+...+..+++|+.|++..+...
T Consensus 166 ---~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~----------------------------- 213 (477)
T 2id5_A 166 ---SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL----------------------------- 213 (477)
T ss_dssp ---SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTC-----------------------------
T ss_pred ---ccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccc-----------------------------
Confidence 111234566777777777777666666656666667777666554211
Q ss_pred ceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeecccccccccccccc
Q 002037 660 EYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRL 739 (977)
Q Consensus 660 ~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L 739 (977)
..++.. .....+|+.|++++|.+... +...+..+++|+.|+++++. +..+... ....+++|
T Consensus 214 -----------~~~~~~-~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-----~~~~l~~L 274 (477)
T 2id5_A 214 -----------DTMTPN-CLYGLNLTSLSITHCNLTAV-PYLAVRHLVYLRFLNLSYNP-ISTIEGS-----MLHELLRL 274 (477)
T ss_dssp -----------CEECTT-TTTTCCCSEEEEESSCCCSC-CHHHHTTCTTCCEEECCSSC-CCEECTT-----SCTTCTTC
T ss_pred -----------cccCcc-cccCccccEEECcCCccccc-CHHHhcCccccCeeECCCCc-CCccChh-----hccccccC
Confidence 111000 00122455555555543322 22223444555555555442 2221110 00125566
Q ss_pred ceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccc
Q 002037 740 RELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCD 801 (977)
Q Consensus 740 ~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 801 (977)
+.|.|.++ .++.+ .+..+..+++|+.|+++++ +++.++ ...+..+++|+.|++++++
T Consensus 275 ~~L~L~~n-~l~~~--~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 275 QEIQLVGG-QLAVV--EPYAFRGLNYLRVLNVSGN-QLTTLE-ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEEECCSS-CCSEE--CTTTBTTCTTCCEEECCSS-CCSCCC-GGGBSCGGGCCEEECCSSC
T ss_pred CEEECCCC-ccceE--CHHHhcCcccCCEEECCCC-cCceeC-HhHcCCCcccCEEEccCCC
Confidence 66666655 23332 1223445666777777664 555542 2333556677777776654
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.86 E-value=5e-21 Score=218.07 Aligned_cols=350 Identities=17% Similarity=0.140 Sum_probs=198.2
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC-CCCCCcccCCCC-------------CeEecCCCCCCCC
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKL-------------RSLHLENTHLNDA 504 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L-------------~~L~L~~~~l~~~ 504 (977)
.+..+|+.|++++|.+..+|.. ++++++|++|++++|.+. .+|.+++.+.+| ++|++++|.+...
T Consensus 8 ~~~~~L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l 86 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL 86 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred cccccchhhhcccCchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence 4567899999999999777765 689999999999999887 788899888765 8999999988873
Q ss_pred ccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCc
Q 002037 505 SLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNA 584 (977)
Q Consensus 505 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~ 584 (977)
+.+ .++|++|++++|.++.+|.. +.+|++|++++|.+ ..+|.. .++|++|++++|...
T Consensus 87 p~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l-~~l~~~----~~~L~~L~L~~n~l~------------ 144 (454)
T 1jl5_A 87 PEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNL-KALSDL----PPLLEYLGVSNNQLE------------ 144 (454)
T ss_dssp CSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCC-SCCCSC----CTTCCEEECCSSCCS------------
T ss_pred CCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCcc-CcccCC----CCCCCEEECcCCCCC------------
Confidence 222 47899999999999888864 47899999999874 345431 268999999886321
Q ss_pred cccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEe
Q 002037 585 RFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTL 664 (977)
Q Consensus 585 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l 664 (977)
.+.+++.+++|+.|+++.+....++.. ..+|+.|++..+.... .+. +. .+++|+.|++
T Consensus 145 ~lp~~~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~-l~~-----~~------------~l~~L~~L~l 202 (454)
T 1jl5_A 145 KLPELQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEE-LPE-----LQ------------NLPFLTAIYA 202 (454)
T ss_dssp SCCCCTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSS-CCC-----CT------------TCTTCCEEEC
T ss_pred CCcccCCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCc-Ccc-----cc------------CCCCCCEEEC
Confidence 123578888999999988876654422 3577777776653221 100 00 1356666666
Q ss_pred cCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeec
Q 002037 665 TRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVL 744 (977)
Q Consensus 665 ~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L 744 (977)
.++. +..++. ..++|+.|++++|.+.. +|. +..+++|+.|+++++. +..++. .+++|+.|++
T Consensus 203 ~~N~-l~~l~~----~~~~L~~L~l~~n~l~~-lp~--~~~l~~L~~L~l~~N~-l~~l~~---------~~~~L~~L~l 264 (454)
T 1jl5_A 203 DNNS-LKKLPD----LPLSLESIVAGNNILEE-LPE--LQNLPFLTTIYADNNL-LKTLPD---------LPPSLEALNV 264 (454)
T ss_dssp CSSC-CSSCCC----CCTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSC-CSSCCS---------CCTTCCEEEC
T ss_pred CCCc-CCcCCC----CcCcccEEECcCCcCCc-ccc--cCCCCCCCEEECCCCc-CCcccc---------cccccCEEEC
Confidence 5542 222222 12467777777776553 232 5566777777776652 222111 2466777777
Q ss_pred cCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEecccccccceeccchhhhhhcccccccc
Q 002037 745 VGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNV 824 (977)
Q Consensus 745 ~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l 824 (977)
.++. ++.+. ..+++|+.|++++| +++.++. ..++|+.|+++++.. ..++.
T Consensus 265 ~~N~-l~~l~------~~~~~L~~L~ls~N-~l~~l~~-----~~~~L~~L~l~~N~l-~~i~~---------------- 314 (454)
T 1jl5_A 265 RDNY-LTDLP------ELPQSLTFLDVSEN-IFSGLSE-----LPPNLYYLNASSNEI-RSLCD---------------- 314 (454)
T ss_dssp CSSC-CSCCC------CCCTTCCEEECCSS-CCSEESC-----CCTTCCEEECCSSCC-SEECC----------------
T ss_pred CCCc-ccccC------cccCcCCEEECcCC-ccCcccC-----cCCcCCEEECcCCcC-CcccC----------------
Confidence 6653 33321 12366777777664 3444321 125667777766532 22110
Q ss_pred CCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccccccccccceeeccccc
Q 002037 825 SSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLP 904 (977)
Q Consensus 825 ~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 904 (977)
.+++|+.|+++++. +..++. .+++|++|++++|. ++.+ +. .+++|++|++++++
T Consensus 315 -------~~~~L~~L~Ls~N~-l~~lp~-----~~~~L~~L~L~~N~-l~~l---------p~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 315 -------LPPSLEELNVSNNK-LIELPA-----LPPRLERLIASFNH-LAEV---------PE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp -------CCTTCCEEECCSSC-CSCCCC-----CCTTCCEEECCSSC-CSCC---------CC---CCTTCCEEECCSSC
T ss_pred -------CcCcCCEEECCCCc-cccccc-----cCCcCCEEECCCCc-cccc---------cc---hhhhccEEECCCCC
Confidence 13577788777753 444321 25777888887763 3333 22 35777788877754
Q ss_pred cccc
Q 002037 905 ELDS 908 (977)
Q Consensus 905 ~L~~ 908 (977)
++.
T Consensus 369 -l~~ 371 (454)
T 1jl5_A 369 -LRE 371 (454)
T ss_dssp -CSS
T ss_pred -CCc
Confidence 443
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.3e-20 Score=223.63 Aligned_cols=303 Identities=18% Similarity=0.211 Sum_probs=231.0
Q ss_pred cccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeE
Q 002037 418 DLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSL 494 (977)
Q Consensus 418 ~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L 494 (977)
.+.+++.+++.++.+..+|. +..+++|++|++++|.+..+++..|..+++|++|++++|.+..+|+ .++.+++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 36788999999999988887 3578999999999999999888888999999999999999999887 56999999999
Q ss_pred ecCCCCCCC-Cc-cccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcC
Q 002037 495 HLENTHLND-AS-LIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFG 571 (977)
Q Consensus 495 ~L~~~~l~~-~~-~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~ 571 (977)
+|++|.+.. |. .++.+++|++|++++|.+..+|. .++.+++|++|++++|.+. .++ ++.+++|+.|+++++..
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhcccCcc
Confidence 999999988 44 46899999999999999998765 5899999999999999854 454 56789999999988632
Q ss_pred CccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHH
Q 002037 572 DWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASW 651 (977)
Q Consensus 572 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~ 651 (977)
..+....+|+.|+++.+.....+... .++|+.|++..+.
T Consensus 205 ---------------~~l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~----------------------- 243 (597)
T 3oja_B 205 ---------------STLAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN----------------------- 243 (597)
T ss_dssp ---------------SEEECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSC-----------------------
T ss_pred ---------------ccccCCchhheeeccCCccccccccc---CCCCCEEECCCCC-----------------------
Confidence 34555678999999988766555433 2455555554332
Q ss_pred HHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeecccccc
Q 002037 652 VKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEG 731 (977)
Q Consensus 652 ~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 731 (977)
+..++ ....+++|+.|++++|.+.+..| ..+..+++|+.|+++++. +..++...
T Consensus 244 ------------------l~~~~--~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~l~~~~---- 297 (597)
T 3oja_B 244 ------------------LTDTA--WLLNYPGLVEVDLSYNELEKIMY-HPFVKMQRLERLYISNNR-LVALNLYG---- 297 (597)
T ss_dssp ------------------CCCCG--GGGGCTTCSEEECCSSCCCEEES-GGGTTCSSCCEEECTTSC-CCEEECSS----
T ss_pred ------------------CCCCh--hhccCCCCCEEECCCCccCCCCH-HHhcCccCCCEEECCCCC-CCCCCccc----
Confidence 12222 23357888888888887766544 346678888888888763 33333221
Q ss_pred ccccccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccccc
Q 002037 732 EQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDL 802 (977)
Q Consensus 732 ~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~ 802 (977)
..+|+|+.|+|+++. ++.++ .....+++|+.|++++|. +..++ +..+++|+.|++++++-
T Consensus 298 --~~l~~L~~L~Ls~N~-l~~i~---~~~~~l~~L~~L~L~~N~-l~~~~----~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 298 --QPIPTLKVLDLSHNH-LLHVE---RNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp --SCCTTCCEEECCSSC-CCCCG---GGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCE
T ss_pred --ccCCCCcEEECCCCC-CCccC---cccccCCCCCEEECCCCC-CCCcC----hhhcCCCCEEEeeCCCC
Confidence 248899999998874 44432 234578899999999864 65553 35678999999998763
No 44
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=3.2e-20 Score=214.72 Aligned_cols=303 Identities=18% Similarity=0.171 Sum_probs=211.2
Q ss_pred CcCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-Cc
Q 002037 409 GMKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SL 485 (977)
Q Consensus 409 ~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~ 485 (977)
.....+|..-..+++.|++++|.+..++. +..+++|+.|++++|.+..+.+..|.++++|++|++++|.+..+|. .+
T Consensus 21 ~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 100 (477)
T 2id5_A 21 KRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVF 100 (477)
T ss_dssp CCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSS
T ss_pred CCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccc
Confidence 33445555446789999999999988753 5789999999999999998888888999999999999999999987 57
Q ss_pred ccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCCccChhhhhcCcccc
Q 002037 486 PCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLE 562 (977)
Q Consensus 486 ~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~ 562 (977)
..+++|++|+|++|.+.. +..+..+++|++|++++|.+..++ ..+..+++|++|++++|. +..+|...+..+++|+
T Consensus 101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~ 179 (477)
T 2id5_A 101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLI 179 (477)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCC
T ss_pred cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCc
Confidence 899999999999999887 578899999999999999998775 568999999999999997 4567777799999999
Q ss_pred EEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcc-ccccCCCCCCCCcceEEEEecCcccCCCCcceeee
Q 002037 563 ELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTK-VLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHL 641 (977)
Q Consensus 563 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l 641 (977)
.|+++++.... .....+..+++|+.|+++.+... ..+.... ...+|+.|++..+..
T Consensus 180 ~L~l~~n~i~~----------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l------------ 236 (477)
T 2id5_A 180 VLRLRHLNINA----------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNL------------ 236 (477)
T ss_dssp EEEEESCCCCE----------ECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCC------------
T ss_pred EEeCCCCcCcE----------eChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcc------------
Confidence 99998874321 12245778899999999976532 2333222 234677777765421
Q ss_pred cccchhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccc
Q 002037 642 KNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLK 721 (977)
Q Consensus 642 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 721 (977)
..++......+++|+.|+|++|.+... +...+..+++|+.|+++++. +.
T Consensus 237 -----------------------------~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~ 285 (477)
T 2id5_A 237 -----------------------------TAVPYLAVRHLVYLRFLNLSYNPISTI-EGSMLHELLRLQEIQLVGGQ-LA 285 (477)
T ss_dssp -----------------------------CSCCHHHHTTCTTCCEEECCSSCCCEE-CTTSCTTCTTCCEEECCSSC-CS
T ss_pred -----------------------------cccCHHHhcCccccCeeECCCCcCCcc-ChhhccccccCCEEECCCCc-cc
Confidence 112211223455566666666654433 22334555666666665552 22
Q ss_pred eeeeccccccccccccccceeeccCccCcceeeecccccccccccceEEEeec
Q 002037 722 EVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDC 774 (977)
Q Consensus 722 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C 774 (977)
.+.+. ....+++|+.|+|+++ .++.+. ...+..+++|+.|+++++
T Consensus 286 ~~~~~-----~~~~l~~L~~L~L~~N-~l~~~~--~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 286 VVEPY-----AFRGLNYLRVLNVSGN-QLTTLE--ESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EECTT-----TBTTCTTCCEEECCSS-CCSCCC--GGGBSCGGGCCEEECCSS
T ss_pred eECHH-----HhcCcccCCEEECCCC-cCceeC--HhHcCCCcccCEEEccCC
Confidence 21110 0112566666666665 333321 112345667777777663
No 45
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=1.1e-21 Score=233.91 Aligned_cols=127 Identities=15% Similarity=0.221 Sum_probs=59.5
Q ss_pred CCCCccEEEccCCCCCCCChhHHhc-CC-CccEEEccCCc-CC--CCCCCcccCCCCCeEecCCCCCCCC------cccc
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEH-TR-EIKNLDLSSTN-IS--SLAPSLPCLEKLRSLHLENTHLNDA------SLIR 508 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~-l~-~Lr~L~l~~~~-~~--~lp~~~~~l~~L~~L~L~~~~l~~~------~~i~ 508 (977)
.+++|+.|++++|.+.......+.. ++ +|++|++++|. +. .++..+..+++|++|+|++|.+.+. ....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 3555666666655443322222222 22 26666665554 11 1112223455666666666554331 1233
Q ss_pred CCCCccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccC
Q 002037 509 EFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGN 568 (977)
Q Consensus 509 ~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~ 568 (977)
.+++|++|++++|.+. .++..+.++++|++|++++|.. ..+|.. +..+++|++|++++
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~-~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGF-FKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHH-HHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHH-HhhhhHHHhhcccc
Confidence 4555555555555543 2333344555555555555542 224432 55555555555543
No 46
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1.4e-20 Score=224.50 Aligned_cols=153 Identities=15% Similarity=0.129 Sum_probs=102.9
Q ss_pred HHhcCCCccEEEccCCcCCCC-CCCccc-CC-CCCeEecCCCC-CCC---CccccCCCCccEEEccCCCCcc-----cCc
Q 002037 461 FFEHTREIKNLDLSSTNISSL-APSLPC-LE-KLRSLHLENTH-LND---ASLIREFGELEVLILKGSRIVE-----LPN 528 (977)
Q Consensus 461 ~~~~l~~Lr~L~l~~~~~~~l-p~~~~~-l~-~L~~L~L~~~~-l~~---~~~i~~l~~L~~L~l~~~~l~~-----lp~ 528 (977)
.+..+++|++|+++++.+... +..+.. ++ +|++|++++|. +.. +.....+++|++|++++|.+.. ++.
T Consensus 107 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 107 ISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred HHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 345899999999999976632 234444 33 49999999987 322 2334588999999999997653 333
Q ss_pred cccCCCCCCEEEcCCCCCC----CccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecC
Q 002037 529 GIGTVSNLKLLDLSNNLFL----QVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSN 604 (977)
Q Consensus 529 ~i~~l~~L~~L~l~~~~~~----~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 604 (977)
....+++|++|++++|.+. ..++. .+..+++|++|+++++... .....+..+++|+.|++....
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~-----------~l~~~~~~~~~L~~L~l~~~~ 254 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEIL-----------ELVGFFKAAANLEEFCGGSLN 254 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGG-----------GGHHHHHHCTTCCEEEECBCC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHH-----------HHHHHHhhhhHHHhhcccccc
Confidence 4567899999999999754 22332 3678999999999886321 123457788999999998533
Q ss_pred cccc---ccCCCCCCCCcceEEEE
Q 002037 605 TKVL---SVDFDGPWTNLKRFRVC 625 (977)
Q Consensus 605 ~~~~---~~~~~~~~~~L~~L~l~ 625 (977)
.... ....+..+++|+.|.+.
T Consensus 255 ~~~~~~~~~~~l~~~~~L~~L~l~ 278 (592)
T 3ogk_B 255 EDIGMPEKYMNLVFPRKLCRLGLS 278 (592)
T ss_dssp CCTTCTTSSSCCCCCTTCCEEEET
T ss_pred cccchHHHHHHhhccccccccCcc
Confidence 2211 11223445666666553
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=1.9e-18 Score=189.21 Aligned_cols=291 Identities=15% Similarity=0.178 Sum_probs=150.4
Q ss_pred CccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEEEcc
Q 002037 443 RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILK 519 (977)
Q Consensus 443 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~ 519 (977)
+++.++++++.+..+|..+ .+.|++|++++|.+..+++ .++.+++|++|++++|.+.. |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4555666655555555432 2456666666666666654 56666666666666666655 4556666666666666
Q ss_pred CCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEE
Q 002037 520 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLY 599 (977)
Q Consensus 520 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 599 (977)
+|.++.+|..+. ++|++|++++|.+ ..++...+..+++|++|+++++.... .......+..+++|+.|+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKS--------SGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCG--------GGBCTTGGGGCTTCCEEE
T ss_pred CCcCCccChhhc--ccccEEECCCCcc-cccCHhHhcCCccccEEECCCCcCCc--------cCcChhhccCCCCcCEEE
Confidence 666666665544 5666666666653 33444446666666666666543210 011223455566666666
Q ss_pred eeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccccccccC
Q 002037 600 IHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQ 679 (977)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 679 (977)
++.+....++.... ++|+.|++ .++ .+..+......
T Consensus 178 l~~n~l~~l~~~~~---~~L~~L~l----------------------------------------~~n-~l~~~~~~~~~ 213 (330)
T 1xku_A 178 IADTNITTIPQGLP---PSLTELHL----------------------------------------DGN-KITKVDAASLK 213 (330)
T ss_dssp CCSSCCCSCCSSCC---TTCSEEEC----------------------------------------TTS-CCCEECTGGGT
T ss_pred CCCCccccCCcccc---ccCCEEEC----------------------------------------CCC-cCCccCHHHhc
Confidence 66555444333221 33433333 221 11222112233
Q ss_pred CCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeeccc-
Q 002037 680 GFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNH- 758 (977)
Q Consensus 680 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~- 758 (977)
.+++|+.|++++|.+....+ ..+..+++|+.|+++++. +..++. ....+++|+.|++.++. ++.+.....
T Consensus 214 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~------~l~~l~~L~~L~l~~N~-i~~~~~~~f~ 284 (330)
T 1xku_A 214 GLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNK-LVKVPG------GLADHKYIQVVYLHNNN-ISAIGSNDFC 284 (330)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSC-CSSCCT------TTTTCSSCCEEECCSSC-CCCCCTTSSS
T ss_pred CCCCCCEEECCCCcCceeCh-hhccCCCCCCEEECCCCc-CccCCh------hhccCCCcCEEECCCCc-CCccChhhcC
Confidence 45666666666665554432 235556666666666652 222221 11236677777776652 333321111
Q ss_pred ---ccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccc
Q 002037 759 ---SVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKC 800 (977)
Q Consensus 759 ---~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 800 (977)
.....+.|+.|++.+.+-...-.++..+..+.+|+.++++++
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 011246677777776542211112334556777777777654
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.80 E-value=1.6e-18 Score=189.84 Aligned_cols=293 Identities=13% Similarity=0.134 Sum_probs=200.3
Q ss_pred cCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCC
Q 002037 420 QNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLEN 498 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 498 (977)
.+++.++++++.+..+|... .+.++.|++++|.+..++...|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp EETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 46778888888888887632 47899999999999998888889999999999999999987 66899999999999999
Q ss_pred CCCCC-CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCC--ccChhhhhcCccccEEEccCCcCCcc
Q 002037 499 THLND-ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQ--VIPPNVISKLSQLEELYVGNSFGDWE 574 (977)
Q Consensus 499 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~--~~p~~~i~~L~~L~~L~l~~~~~~~~ 574 (977)
|.+.. +..+. ++|++|++++|.+..++.. +..+++|++|++++|.+.. ..+.. +..+++|++|+++++.....
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccC
Confidence 99887 44443 7899999999999988765 7899999999999997643 33444 88999999999988643210
Q ss_pred ccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHH
Q 002037 575 VEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKL 654 (977)
Q Consensus 575 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 654 (977)
...+ .++|+.|+++.+.........+..+++|+.|++..+..
T Consensus 187 -----------~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l------------------------- 228 (330)
T 1xku_A 187 -----------PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI------------------------- 228 (330)
T ss_dssp -----------CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCC-------------------------
T ss_pred -----------Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC-------------------------
Confidence 1111 26899999998887776666666777777777655421
Q ss_pred HHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeecccc-cccc
Q 002037 655 LLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDI-EGEQ 733 (977)
Q Consensus 655 ~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~~~ 733 (977)
..++.-....+++|+.|++++|.+... |. .+..+++|+.|+++++. +..+....-. ....
T Consensus 229 ----------------~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~-~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~ 289 (330)
T 1xku_A 229 ----------------SAVDNGSLANTPHLRELHLNNNKLVKV-PG-GLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYN 289 (330)
T ss_dssp ----------------CEECTTTGGGSTTCCEEECCSSCCSSC-CT-TTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCC
T ss_pred ----------------ceeChhhccCCCCCCEEECCCCcCccC-Ch-hhccCCCcCEEECCCCc-CCccChhhcCCcccc
Confidence 111111223456677777777765533 22 24566777777776653 2222111000 0001
Q ss_pred ccccccceeeccCccCcceeeecccccccccccceEEEeec
Q 002037 734 AGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDC 774 (977)
Q Consensus 734 ~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C 774 (977)
...+.|+.|++.+++- ..+...+..+..+++|+.++++++
T Consensus 290 ~~~~~l~~l~l~~N~~-~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 290 TKKASYSGVSLFSNPV-QYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TTSCCCSEEECCSSSS-CGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccccceEeecCcc-cccccCccccccccceeEEEeccc
Confidence 1257788888888762 221122334556778888887764
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=4.1e-19 Score=194.68 Aligned_cols=291 Identities=18% Similarity=0.201 Sum_probs=145.6
Q ss_pred CccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEEEcc
Q 002037 443 RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILK 519 (977)
Q Consensus 443 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~ 519 (977)
+++.++++++.+..+|..+ .+.|++|++++|.+..+++ .+..+++|++|++++|.+.. +..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4555666665555555433 2456666666666665543 56666666666666666555 4456666666666666
Q ss_pred CCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEE
Q 002037 520 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLY 599 (977)
Q Consensus 520 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 599 (977)
+|.+..+|..+. ++|++|++++|.+. .+|...++.+++|++|+++++.... .......+..+ +|+.|+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~--------~~~~~~~~~~l-~L~~L~ 178 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLEN--------SGFEPGAFDGL-KLNYLR 178 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBG--------GGSCTTSSCSC-CCSCCB
T ss_pred CCcCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCcccc--------CCCCcccccCC-ccCEEE
Confidence 666666665544 56666666666533 3444445666666666665543210 00111233333 566666
Q ss_pred eeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccccccccC
Q 002037 600 IHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQ 679 (977)
Q Consensus 600 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~ 679 (977)
++.+....++.... ++|+.|++..+. +..++.....
T Consensus 179 l~~n~l~~l~~~~~---~~L~~L~l~~n~-----------------------------------------i~~~~~~~l~ 214 (332)
T 2ft3_A 179 ISEAKLTGIPKDLP---ETLNELHLDHNK-----------------------------------------IQAIELEDLL 214 (332)
T ss_dssp CCSSBCSSCCSSSC---SSCSCCBCCSSC-----------------------------------------CCCCCTTSST
T ss_pred CcCCCCCccCcccc---CCCCEEECCCCc-----------------------------------------CCccCHHHhc
Confidence 66555444433221 334433332221 1111111223
Q ss_pred CCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeecccc
Q 002037 680 GFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHS 759 (977)
Q Consensus 680 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~ 759 (977)
.+++|+.|++++|.+....+ ..+..+++|+.|+++++. +..++. ....+++|+.|++.++ .++.+......
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~lp~------~l~~l~~L~~L~l~~N-~l~~~~~~~~~ 285 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNK-LSRVPA------GLPDLKLLQVVYLHTN-NITKVGVNDFC 285 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSC-CCBCCT------TGGGCTTCCEEECCSS-CCCBCCTTSSS
T ss_pred CCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCc-CeecCh------hhhcCccCCEEECCCC-CCCccChhHcc
Confidence 45556666666665544322 234555666666666552 222221 1123666666666665 23333211110
Q ss_pred ----cccccccceEEEeecCCcccccchhHHhhcCCCceEEecccc
Q 002037 760 ----VVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCD 801 (977)
Q Consensus 760 ----~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~ 801 (977)
...++.|+.|++.+++-...-..+..+..+++|+.|+++++.
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 112466777777776533211233445677888888887764
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=8.2e-19 Score=192.26 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=212.5
Q ss_pred cCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCC
Q 002037 420 QNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLEN 498 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~ 498 (977)
.+++.++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred ccCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 45788999999988888643 47999999999999988887889999999999999999987 55899999999999999
Q ss_pred CCCCC-CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCC-ccChhhhhcCccccEEEccCCcCCccc
Q 002037 499 THLND-ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQ-VIPPNVISKLSQLEELYVGNSFGDWEV 575 (977)
Q Consensus 499 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~-~~p~~~i~~L~~L~~L~l~~~~~~~~~ 575 (977)
|.+.. |..+. ++|++|++++|.+..+|.. +..+++|++|++++|.+.. ..++..+..+ +|++|+++++....
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-- 186 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-- 186 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS--
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc--
Confidence 99887 55554 8999999999999999875 8999999999999998642 1333336777 99999998874321
Q ss_pred cccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHH
Q 002037 576 EETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLL 655 (977)
Q Consensus 576 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 655 (977)
....+ .++|+.|+++.+.....+...+..+++|+.|++..+
T Consensus 187 ---------l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N---------------------------- 227 (332)
T 2ft3_A 187 ---------IPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN---------------------------- 227 (332)
T ss_dssp ---------CCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS----------------------------
T ss_pred ---------cCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC----------------------------
Confidence 11111 268899999988877776666656666665554332
Q ss_pred HhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeecccccc--cc
Q 002037 656 LEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEG--EQ 733 (977)
Q Consensus 656 ~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~--~~ 733 (977)
.+..++......+++|+.|++++|.+... |.. +..+++|+.|+++++. +..+... .+.. ..
T Consensus 228 -------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~l~~N~-l~~~~~~-~~~~~~~~ 290 (332)
T 2ft3_A 228 -------------QIRMIENGSLSFLPTLRELHLDNNKLSRV-PAG-LPDLKLLQVVYLHTNN-ITKVGVN-DFCPVGFG 290 (332)
T ss_dssp -------------CCCCCCTTGGGGCTTCCEEECCSSCCCBC-CTT-GGGCTTCCEEECCSSC-CCBCCTT-SSSCSSCC
T ss_pred -------------cCCcCChhHhhCCCCCCEEECCCCcCeec-Chh-hhcCccCCEEECCCCC-CCccChh-Hccccccc
Confidence 22333332345689999999999988744 333 7889999999999874 3332211 1000 01
Q ss_pred ccccccceeeccCccCcceeeecccccccccccceEEEeecC
Q 002037 734 AGLKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCG 775 (977)
Q Consensus 734 ~~~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~ 775 (977)
..+++|+.|.+.+++- ......+..+..+++|+.++++++.
T Consensus 291 ~~~~~l~~L~l~~N~~-~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 291 VKRAYYNGISLFNNPV-PYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCCBSEEECCSSSS-CGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccceEeecCcc-cccccCcccccccchhhhhhccccc
Confidence 1267899999999873 2111223445678899999998865
No 51
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=4.9e-21 Score=228.57 Aligned_cols=382 Identities=15% Similarity=0.130 Sum_probs=176.9
Q ss_pred CCCCccEEEccCCCCCCCChhHHh-cCCCccEEEccCC-cCCC--CCCCcccCCCCCeEecCCCCCCC--Cccc----cC
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFE-HTREIKNLDLSST-NISS--LAPSLPCLEKLRSLHLENTHLND--ASLI----RE 509 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~l~~~-~~~~--lp~~~~~l~~L~~L~L~~~~l~~--~~~i----~~ 509 (977)
.+++|+.|++++|.+.......+. .+++|++|++++| .+.. ++..+..+++|++|++++|.+.+ +..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 355666666666654432222222 4566666666665 3332 33333456666666666665443 1112 24
Q ss_pred CCCccEEEccCCC--Cc--ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCcc
Q 002037 510 FGELEVLILKGSR--IV--ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNAR 585 (977)
Q Consensus 510 l~~L~~L~l~~~~--l~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~ 585 (977)
+++|++|++++|. +. .++.-+.++++|++|++++|.....+|.. +..+++|++|+++.+....... .....
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~l 257 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATL-LQRAPQLEELGTGGYTAEVRPD----VYSGL 257 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHH-HHHCTTCSEEECSBCCCCCCHH----HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHH-HhcCCcceEcccccccCccchh----hHHHH
Confidence 4566666666554 11 12222234556666666665333333333 5556666666554432100000 00001
Q ss_pred ccccccCCCCcEEE-eeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEe
Q 002037 586 FSEVASLTRLTVLY-IHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTL 664 (977)
Q Consensus 586 ~~~l~~l~~L~~L~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l 664 (977)
...+.++++|+.|. +.... ....+.. ...+++|+.|++
T Consensus 258 ~~~l~~~~~L~~Ls~~~~~~----------------------------------------~~~l~~~-~~~~~~L~~L~L 296 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWDAV----------------------------------------PAYLPAV-YSVCSRLTTLNL 296 (594)
T ss_dssp HHHHHTCTTCCEEECCBTCC----------------------------------------GGGGGGG-HHHHTTCCEEEC
T ss_pred HHHHhcCCCcccccCCcccc----------------------------------------hhhHHHH-HHhhCCCCEEEc
Confidence 11334444444441 11000 0001111 112467777777
Q ss_pred cCCCCccccc-ccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeec--------ccceeeecccccccccc
Q 002037 665 TRSSNLQDIG-EIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCY--------SLKEVFCLEDIEGEQAG 735 (977)
Q Consensus 665 ~~~~~~~~~~-~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------~l~~~~~~~~~~~~~~~ 735 (977)
.++. +.... ......+++|+.|++.+| +.......+...+++|++|++.+|. .+... ++......
T Consensus 297 ~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~----~l~~l~~~ 370 (594)
T 2p1m_B 297 SYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ----GLVSVSMG 370 (594)
T ss_dssp TTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH----HHHHHHHH
T ss_pred cCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH----HHHHHHHh
Confidence 6665 33221 111235778888888877 3222222223457778888875542 11110 00000112
Q ss_pred ccccceeeccCccCcceeeeccccc-ccccccceEEEe-----ecCCcccccch----hHHhhcCCCceEEecccccccc
Q 002037 736 LKRLRELVLVGLPKVLTIWKGNHSV-VYLKTLKLMKVK-----DCGKLRYLFSR----TLAEGLGNLEDLSILKCDLMEE 805 (977)
Q Consensus 736 ~~~L~~L~L~~~~~L~~i~~~~~~~-~~l~~L~~L~l~-----~C~~L~~l~~~----~~~~~l~~L~~L~l~~c~~l~~ 805 (977)
+++|+.|.+ ++..++.. +.... ..+++|+.|++. +|..++..+.. ..+..+++|+.|++++ .+.+
T Consensus 371 ~~~L~~L~~-~~~~l~~~--~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~ 445 (594)
T 2p1m_B 371 CPKLESVLY-FCRQMTNA--ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTD 445 (594)
T ss_dssp CTTCCEEEE-EESCCCHH--HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCH
T ss_pred chhHHHHHH-hcCCcCHH--HHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccH
Confidence 667777743 33333321 11111 246777777777 56666643221 1245667777777754 2222
Q ss_pred eeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceecccccccccccccEEEEecccccceeeeccccccc
Q 002037 806 IVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKA 885 (977)
Q Consensus 806 i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~ 885 (977)
..... .. ..+++|+.|+|++|. +.+......+..+++|++|++++|+. +... .
T Consensus 446 ~~~~~---l~---------------~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~-------~ 498 (594)
T 2p1m_B 446 KVFEY---IG---------------TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF-GDKA-------L 498 (594)
T ss_dssp HHHHH---HH---------------HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC-CHHH-------H
T ss_pred HHHHH---HH---------------HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC-cHHH-------H
Confidence 10000 00 025677777777765 33322222235567777777777763 1110 0
Q ss_pred ccccccccccceeecccccc
Q 002037 886 AENKNVLPKLKILALEDLPE 905 (977)
Q Consensus 886 ~~~~~~~~~L~~L~l~~c~~ 905 (977)
......+++|+.|++++|+.
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCC
T ss_pred HHHHHhCCCCCEEeeeCCCC
Confidence 11224467777777777764
No 52
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=2.4e-19 Score=194.25 Aligned_cols=247 Identities=16% Similarity=0.159 Sum_probs=147.8
Q ss_pred CCccEEEccCCCCCC--CChhHHhcCCCccEEEccC-CcCC-CCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccE
Q 002037 442 PRLTTLFLQNNPFAD--IPNAFFEHTREIKNLDLSS-TNIS-SLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEV 515 (977)
Q Consensus 442 ~~L~~L~l~~~~~~~--~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~ 515 (977)
.+++.|++++|.+.. ..+..+.++++|++|++++ +.+. .+|..++.+++|++|++++|.+.. |..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 356666666666654 2233456677777777763 5554 456666777777777777776653 566667777777
Q ss_pred EEccCCCCc-ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCc-cccEEEccCCcCCccccccccCcCccccccccCC
Q 002037 516 LILKGSRIV-ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLS-QLEELYVGNSFGDWEVEETANGQNARFSEVASLT 593 (977)
Q Consensus 516 L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 593 (977)
|++++|.+. .+|..++.+++|++|++++|.+...+|.. ++.++ +|++|+++++.... .....+..++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~----------~~~~~~~~l~ 198 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTG----------KIPPTFANLN 198 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEE----------ECCGGGGGCC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeec----------cCChHHhCCc
Confidence 777777666 56666777777777777777655566655 66666 67777766653211 1123344444
Q ss_pred CCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccc
Q 002037 594 RLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDI 673 (977)
Q Consensus 594 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 673 (977)
|+.|+++.+.........+..+++|+.|++..+... ..+
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----------------------------------------~~~ 237 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----------------------------------------FDL 237 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC----------------------------------------CBG
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee----------------------------------------eec
Confidence 666666666555444444555555555555433110 011
Q ss_pred cccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCc
Q 002037 674 GEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKV 750 (977)
Q Consensus 674 ~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 750 (977)
+. ...+++|+.|++++|.+.+..|. .+..+++|+.|+++++.-...++... .+++|+.|.+.+++.+
T Consensus 238 ~~--~~~l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~Ls~N~l~~~ip~~~-------~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 238 GK--VGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIPQGG-------NLQRFDVSAYANNKCL 304 (313)
T ss_dssp GG--CCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECCCST-------TGGGSCGGGTCSSSEE
T ss_pred Cc--ccccCCCCEEECcCCcccCcCCh-HHhcCcCCCEEECcCCcccccCCCCc-------cccccChHHhcCCCCc
Confidence 11 23467888888888877655543 35667788888887774333333322 3778888888877643
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=4.8e-19 Score=191.90 Aligned_cols=243 Identities=16% Similarity=0.196 Sum_probs=191.6
Q ss_pred cCccEEEeccCCCcc---CCC-CCCCCCccEEEccC-CCCCCCChhHHhcCCCccEEEccCCcCC-CCCCCcccCCCCCe
Q 002037 420 QNCEKLSLMDGNVTA---LPD-QPKCPRLTTLFLQN-NPFADIPNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRS 493 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~---l~~-~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~ 493 (977)
.+++.|+++++.+.. +|. +.++++|++|++++ |.+....+..|.++++|++|++++|.+. .+|..++.+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578999999998874 554 46899999999995 8777555566799999999999999998 77889999999999
Q ss_pred EecCCCCCCC--CccccCCCCccEEEccCCCCc-ccCccccCCC-CCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 494 LHLENTHLND--ASLIREFGELEVLILKGSRIV-ELPNGIGTVS-NLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 494 L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
|++++|.+.. |..++.+++|++|++++|.+. .+|..++.+. +|++|++++|.+...+|.. ++.++ |++|+++++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCC
Confidence 9999999884 788999999999999999998 8999999998 9999999999977778877 88887 999999987
Q ss_pred cCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhH
Q 002037 570 FGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIA 649 (977)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~ 649 (977)
... ......+..+++|+.|+++.+........ +..+++|+.|++..+...
T Consensus 208 ~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~------------------- 257 (313)
T 1ogq_A 208 MLE----------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY------------------- 257 (313)
T ss_dssp EEE----------ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCE-------------------
T ss_pred ccc----------CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCccc-------------------
Confidence 421 12335678899999999998876644433 445666766666544211
Q ss_pred HHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeec
Q 002037 650 SWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCY 718 (977)
Q Consensus 650 ~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 718 (977)
..++ ..+..+++|+.|++++|.+.+..|.. ..+++|+.+++.+++
T Consensus 258 ---------------------~~~p-~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 258 ---------------------GTLP-QGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYANNK 302 (313)
T ss_dssp ---------------------ECCC-GGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCSSS
T ss_pred ---------------------CcCC-hHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcCCC
Confidence 0111 12345788888888888887776653 677888888777764
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.5e-18 Score=185.30 Aligned_cols=89 Identities=20% Similarity=0.324 Sum_probs=67.6
Q ss_pred CCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCC
Q 002037 465 TREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSN 543 (977)
Q Consensus 465 l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~ 543 (977)
...+++|+++++.+..+|+.++.+++|++|+|++|.+.. |..++.+++|++|++++|.+..+|..++++++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 466777777777777777777777777777777777766 6667777777777887777777887788888888888888
Q ss_pred CCCCCccChh
Q 002037 544 NLFLQVIPPN 553 (977)
Q Consensus 544 ~~~~~~~p~~ 553 (977)
|.....+|..
T Consensus 160 n~~~~~~p~~ 169 (328)
T 4fcg_A 160 CPELTELPEP 169 (328)
T ss_dssp ETTCCCCCSC
T ss_pred CCCccccChh
Confidence 7777777754
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=6.2e-18 Score=192.94 Aligned_cols=240 Identities=19% Similarity=0.268 Sum_probs=173.5
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l 501 (977)
+.++..+..+..+|... .++++.|++++|.+..++...|.++++|++|++++|.+..+++ .+..+++|++|+|++|.+
T Consensus 46 ~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 124 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124 (440)
T ss_dssp CEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC
Confidence 45566666777777532 3678889999998888887778889999999999998887764 788889999999999988
Q ss_pred CC--CccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 502 ND--ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 502 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
.. +..+..+++|++|++++|.+..+|. .+.++++|++|++++|.....++...+..+++|++|++++|...
T Consensus 125 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------ 198 (440)
T 3zyj_A 125 TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR------ 198 (440)
T ss_dssp SSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS------
T ss_pred CeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc------
Confidence 87 3468888999999999998888876 47888999999999877777888776888999999998886321
Q ss_pred ccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhc
Q 002037 579 ANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEK 658 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~ 658 (977)
.+..+..+++|+.|+++.+.........+..+++|+.|++..+.
T Consensus 199 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~------------------------------ 242 (440)
T 3zyj_A 199 ------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ------------------------------ 242 (440)
T ss_dssp ------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC------------------------------
T ss_pred ------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc------------------------------
Confidence 22346778888888888877766666666666666666553321
Q ss_pred cceeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEee
Q 002037 659 TEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYC 717 (977)
Q Consensus 659 L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 717 (977)
+..+....+..+++|+.|+|++|.+... +...+..+++|+.|+++++
T Consensus 243 -----------l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 243 -----------IQVIERNAFDNLQSLVEINLAHNNLTLL-PHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp -----------CCEECTTSSTTCTTCCEEECTTSCCCCC-CTTTTSSCTTCCEEECCSS
T ss_pred -----------eeEEChhhhcCCCCCCEEECCCCCCCcc-ChhHhccccCCCEEEcCCC
Confidence 1222222234567777777777766543 3334555666666666554
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=5.8e-18 Score=193.91 Aligned_cols=190 Identities=20% Similarity=0.230 Sum_probs=148.4
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCC-CCcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLA-PSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~l 501 (977)
+.++..+..+..+|.. -.++++.|++++|.+..++...|.++++|++|++++|.+..++ ..+..+++|++|+|++|.+
T Consensus 57 ~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQG-IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp CEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEECCCCcCccCCC-CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 4556666667777653 2368899999999988887778889999999999999988776 4788899999999999988
Q ss_pred CC--CccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 502 ND--ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 502 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
.. +..+..+++|++|++++|.+..+|. .+.++++|++|++++|..+..++...+..+++|++|++++|...
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~------ 209 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK------ 209 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS------
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc------
Confidence 87 3458889999999999999998876 47889999999999887788888777888999999999886321
Q ss_pred ccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEE
Q 002037 579 ANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVC 625 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 625 (977)
.+..+..+++|+.|+++.+.........+..+++|+.|++.
T Consensus 210 ------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 250 (452)
T 3zyi_A 210 ------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250 (452)
T ss_dssp ------SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECT
T ss_pred ------ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeC
Confidence 12346777888888888877666655555556666655553
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=2.1e-18 Score=186.76 Aligned_cols=190 Identities=21% Similarity=0.190 Sum_probs=136.1
Q ss_pred EEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC---CCCcccCCCCCeEecCCCC
Q 002037 424 KLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL---APSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 424 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~~~~l~~L~~L~L~~~~ 500 (977)
.+...++.+..+|.. -.++++.|++++|.+..++...|.++++|++|++++|.+... |..+..+++|++|++++|.
T Consensus 11 ~l~c~~~~l~~ip~~-~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp EEECCSSCCSSCCSC-CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred EEEcCCCCcccCCCC-CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 456666667777653 236788888888888888887788888888888888887755 4566678888888888888
Q ss_pred CCC-CccccCCCCccEEEccCCCCcccCc--cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccc
Q 002037 501 LND-ASLIREFGELEVLILKGSRIVELPN--GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEE 577 (977)
Q Consensus 501 l~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 577 (977)
+.. +..+..+++|++|++++|.+..+|. .+..+++|++|++++|.+....|.. +..+++|++|+++++....
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~---- 164 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQE---- 164 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGG----
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCcccc----
Confidence 777 6668888888888888888887764 5788888888888888755444443 7788888888887763211
Q ss_pred cccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEE
Q 002037 578 TANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRV 624 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 624 (977)
......+..+++|+.|+++.+.....+...+..+++|+.|++
T Consensus 165 -----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 165 -----NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp -----GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred -----ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 012245667777888888777665554444444555555444
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=188.37 Aligned_cols=193 Identities=21% Similarity=0.253 Sum_probs=129.8
Q ss_pred EEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC
Q 002037 425 LSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND 503 (977)
Q Consensus 425 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~ 503 (977)
.+.+++.++.+|.. -.++|++|++++|.+..++...|.++++|++|++++|.+..+++ .++.+++|++|++++|.+..
T Consensus 36 c~~~~~~l~~iP~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 114 (353)
T 2z80_A 36 CKGSSGSLNSIPSG-LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN 114 (353)
T ss_dssp EECCSTTCSSCCTT-CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred eeCCCCCccccccc-ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence 45566666666652 23577788888777777776667777788888888877776644 57777788888888777776
Q ss_pred -Cc-cccCCCCccEEEccCCCCcccCc--cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccc
Q 002037 504 -AS-LIREFGELEVLILKGSRIVELPN--GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETA 579 (977)
Q Consensus 504 -~~-~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~ 579 (977)
+. .++.+++|++|++++|.+..+|. .++.+++|++|++++|.....+++..++.+++|++|+++++...
T Consensus 115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~------- 187 (353)
T 2z80_A 115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ------- 187 (353)
T ss_dssp CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC-------
T ss_pred CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC-------
Confidence 33 36777788888888877777776 57777788888887775455555444777777777777765321
Q ss_pred cCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 580 NGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 580 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
......+..+++|+.|+++.+.....+......+++|+.|++..+.
T Consensus 188 ---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 188 ---SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp ---EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ---ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 1122445666777777777766555444444446667777766553
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.75 E-value=1.1e-17 Score=182.21 Aligned_cols=148 Identities=23% Similarity=0.353 Sum_probs=106.6
Q ss_pred cCccEEEeccCCCccCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCC
Q 002037 420 QNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 498 (977)
..++.|++.++.+..+|.. .++++|++|++++|.+..+|. .+.++++|++|++++|.+..+|..++.+++|++|++++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPD-TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCS-CGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhH-HHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 5677788888877777653 457778888888877776654 34677778888888887777777777788888888877
Q ss_pred CCCCC--Ccccc---------CCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEcc
Q 002037 499 THLND--ASLIR---------EFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVG 567 (977)
Q Consensus 499 ~~l~~--~~~i~---------~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~ 567 (977)
|.+.. |..++ .+++|++|++++|.++.+|..++++++|++|++++|.+. .+|.. ++.+++|++|+++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLR 237 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEECT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEECc
Confidence 66443 44443 377777777777777777777777777777777777644 46665 6777777777777
Q ss_pred CCc
Q 002037 568 NSF 570 (977)
Q Consensus 568 ~~~ 570 (977)
+|.
T Consensus 238 ~n~ 240 (328)
T 4fcg_A 238 GCT 240 (328)
T ss_dssp TCT
T ss_pred CCc
Confidence 653
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.7e-17 Score=179.95 Aligned_cols=177 Identities=24% Similarity=0.295 Sum_probs=146.2
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccE
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEV 515 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~ 515 (977)
..|+.....+.+++.+..+|..+ .++|++|++++|.+..+|. .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34566667888999999998755 3589999999999999887 79999999999999999887 567999999999
Q ss_pred EEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccCh-hhhhcCccccEEEccCCcCCccccccccCcCccccccccCC
Q 002037 516 LILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPP-NVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLT 593 (977)
Q Consensus 516 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 593 (977)
|++++|.++.+|.. ++.+++|++|++++|.+ ..+|. ..++.+++|++|+++++.... ......+..++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~---------~~~~~~~~~l~ 174 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFT---------KIQRKDFAGLT 174 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCC---------EECTTTTTTCC
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCcccc---------ccCHHHccCCC
Confidence 99999999999987 89999999999999975 45776 448899999999998863211 11124577889
Q ss_pred CCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 594 RLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 594 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
+|+.|+++.+.........+..+++|+.|++..+.
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 99999999998877767777778888888887653
No 61
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=3.9e-19 Score=212.15 Aligned_cols=374 Identities=17% Similarity=0.106 Sum_probs=211.1
Q ss_pred ccCccEEEeccCCCccC--CCCC-CCCCccEEEccCCC-CCCC-ChhHHhcCCCccEEEccCCcCCC-----CCCCcccC
Q 002037 419 LQNCEKLSLMDGNVTAL--PDQP-KCPRLTTLFLQNNP-FADI-PNAFFEHTREIKNLDLSSTNISS-----LAPSLPCL 488 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l--~~~~-~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~~~~l 488 (977)
.++++.|+++++.+... .... .+++|++|++.+|. +... ....+.++++|++|++++|.+.. ++.....+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 46788999998876431 1112 57899999999984 4321 23455689999999999998654 33334477
Q ss_pred CCCCeEecCCCC--CCC---CccccCCCCccEEEccCC-CCcccCccccCCCCCCEEEcCCCCC------CCccChhhhh
Q 002037 489 EKLRSLHLENTH--LND---ASLIREFGELEVLILKGS-RIVELPNGIGTVSNLKLLDLSNNLF------LQVIPPNVIS 556 (977)
Q Consensus 489 ~~L~~L~L~~~~--l~~---~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~------~~~~p~~~i~ 556 (977)
++|++|++++|. +.. ...+..+++|++|++++| .+..+|..+.++++|++|++..+.. ...++.. +.
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-l~ 262 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-LS 262 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-HH
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-Hh
Confidence 899999999997 322 223456799999999998 6777888889999999999877642 1223444 78
Q ss_pred cCccccEEE-ccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcccc-ccCCCCCCCCcceEEEEecCcccCCC
Q 002037 557 KLSQLEELY-VGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVL-SVDFDGPWTNLKRFRVCVNDDYWEIA 634 (977)
Q Consensus 557 ~L~~L~~L~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~ 634 (977)
++++|+.|. +.+. ........+..+++|+.|+++.+..... .......+++|+.|.+..+.
T Consensus 263 ~~~~L~~Ls~~~~~-----------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------ 325 (594)
T 2p1m_B 263 GCKELRCLSGFWDA-----------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYI------ 325 (594)
T ss_dssp TCTTCCEEECCBTC-----------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGG------
T ss_pred cCCCcccccCCccc-----------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCcc------
Confidence 899999983 3221 1111112234678999999987763321 11224467888888886431
Q ss_pred CcceeeecccchhhHHHHHHHHhccceeEecCC--------CCcccccccc-cCCCCCccEEeeccccccccccCCcccc
Q 002037 635 PKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRS--------SNLQDIGEID-VQGFTGLMCMHLRACSMQRIFHSNFYPT 705 (977)
Q Consensus 635 ~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~--------~~~~~~~~l~-~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 705 (977)
.......+...+++|+.|++.++ ..+.+..... ..++++|+.|.+..+.+.......+...
T Consensus 326 ----------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~ 395 (594)
T 2p1m_B 326 ----------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN 395 (594)
T ss_dssp ----------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhh
Confidence 11112223333567777777443 2221110000 0124555555444333332222222223
Q ss_pred cccceEEEEEeecccceeeeccccccccccccccceeecc-----CccCcceeee--cc-cccccccccceEEEeecCCc
Q 002037 706 VQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLV-----GLPKVLTIWK--GN-HSVVYLKTLKLMKVKDCGKL 777 (977)
Q Consensus 706 l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~-----~~~~L~~i~~--~~-~~~~~l~~L~~L~l~~C~~L 777 (977)
+|+|+.|++. +|..++.... +. .....+++|+.|++++ .+
T Consensus 396 ------------------------------~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l 443 (594)
T 2p1m_B 396 ------------------------------RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LL 443 (594)
T ss_dssp ------------------------------CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SC
T ss_pred ------------------------------CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cc
Confidence 4445555554 2333332110 00 0023456666666644 34
Q ss_pred ccccchhHHhhcCCCceEEecccccccceeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCcceeccccccc
Q 002037 778 RYLFSRTLAEGLGNLEDLSILKCDLMEEIVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRVLSLTNAH 857 (977)
Q Consensus 778 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~ 857 (977)
...........+++|+.|++++|.. .+.... ... ..+++|++|+|++|+. .+......+.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i-~~~~~~---~l~---------------~~~~~L~~L~L~~n~~-~~~~~~~~~~ 503 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGD-SDLGMH---HVL---------------SGCDSLRKLEIRDCPF-GDKALLANAS 503 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCS-SHHHHH---HHH---------------HHCTTCCEEEEESCSC-CHHHHHHTGG
T ss_pred cHHHHHHHHHhchhccEeeccCCCC-cHHHHH---HHH---------------hcCCCcCEEECcCCCC-cHHHHHHHHH
Confidence 3332222333466777777776652 111000 000 1267777777777765 3322233445
Q ss_pred ccccccEEEEecccc
Q 002037 858 NLKQLEELTVASCNH 872 (977)
Q Consensus 858 ~l~~L~~L~i~~C~~ 872 (977)
.+++|++|++++|+.
T Consensus 504 ~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 504 KLETMRSLWMSSCSV 518 (594)
T ss_dssp GGGGSSEEEEESSCC
T ss_pred hCCCCCEEeeeCCCC
Confidence 677788888877764
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=9.3e-20 Score=210.11 Aligned_cols=368 Identities=16% Similarity=0.113 Sum_probs=187.6
Q ss_pred CCccEEEccCCCCCCCCh-hHHhcCCCccEEEccCCcCC-----CCCCCcccCCCCCeEecCCCCCCC--Cccc-cCCC-
Q 002037 442 PRLTTLFLQNNPFADIPN-AFFEHTREIKNLDLSSTNIS-----SLAPSLPCLEKLRSLHLENTHLND--ASLI-REFG- 511 (977)
Q Consensus 442 ~~L~~L~l~~~~~~~~~~-~~~~~l~~Lr~L~l~~~~~~-----~lp~~~~~l~~L~~L~L~~~~l~~--~~~i-~~l~- 511 (977)
++|+.|+++++.+..... ..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+ +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 456777777776654432 33667788888888888776 345566777888888888877655 3222 2344
Q ss_pred ---CccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCCCCccChhh----hhcCccccEEEccCCcCCccccccc
Q 002037 512 ---ELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQVIPPNV----ISKLSQLEELYVGNSFGDWEVEETA 579 (977)
Q Consensus 512 ---~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~----i~~L~~L~~L~l~~~~~~~~~~~~~ 579 (977)
+|++|++++|.+. .+|..+..+++|++|++++|.+....+..+ ....++|++|++++|......
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---- 158 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS---- 158 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH----
Confidence 5888888888776 456777788888888888877433222221 112456888887776321100
Q ss_pred cCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhcc
Q 002037 580 NGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKT 659 (977)
Q Consensus 580 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L 659 (977)
.......+..+++|+.|+++.+.........+ ...+....++|
T Consensus 159 --~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l-----------------------------------~~~l~~~~~~L 201 (461)
T 1z7x_W 159 --CEPLASVLRAKPDFKELTVSNNDINEAGVRVL-----------------------------------CQGLKDSPCQL 201 (461)
T ss_dssp --HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHH-----------------------------------HHHHHHSCCCC
T ss_pred --HHHHHHHHhhCCCCCEEECcCCCcchHHHHHH-----------------------------------HHHHhcCCCCc
Confidence 00112334556777777777654322111100 00000001244
Q ss_pred ceeEecCCCCccccc----ccccCCCCCccEEeecccccccccc----CCcccccccceEEEEEeecccceeeecccccc
Q 002037 660 EYLTLTRSSNLQDIG----EIDVQGFTGLMCMHLRACSMQRIFH----SNFYPTVQILEELHVEYCYSLKEVFCLEDIEG 731 (977)
Q Consensus 660 ~~L~l~~~~~~~~~~----~l~~~~l~~L~~L~L~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~ 731 (977)
+.|++.++. +.... .-....+++|+.|++++|.+..... ......+++|++|++++|. +.... ...+..
T Consensus 202 ~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~-~~~l~~ 278 (461)
T 1z7x_W 202 EALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKG-CGDLCR 278 (461)
T ss_dssp CEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHH-HHHHHH
T ss_pred eEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHH-HHHHHH
Confidence 444444331 11100 0001134555555555554333211 1112234556666665552 22100 000000
Q ss_pred ccccccccceeeccCccCcceeeeccc---ccccccccceEEEeecCCccccc---chhHHhhcCCCceEEecccccccc
Q 002037 732 EQAGLKRLRELVLVGLPKVLTIWKGNH---SVVYLKTLKLMKVKDCGKLRYLF---SRTLAEGLGNLEDLSILKCDLMEE 805 (977)
Q Consensus 732 ~~~~~~~L~~L~L~~~~~L~~i~~~~~---~~~~l~~L~~L~l~~C~~L~~l~---~~~~~~~l~~L~~L~l~~c~~l~~ 805 (977)
....+++|+.|+++++. ++....... -....++|+.|++++|. ++... .+..+..+++|++|++++|. +.+
T Consensus 279 ~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 355 (461)
T 1z7x_W 279 VLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LED 355 (461)
T ss_dssp HHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHH
T ss_pred HHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-ccc
Confidence 11125677777777663 221100000 00123578888888764 44321 12334567888999988874 332
Q ss_pred eeccchhhhhhccccccccCCCCCCCcCCCccEEEeccccCccee---cccccccccccccEEEEeccc
Q 002037 806 IVSVDEAEVEQGAAQERNVSSAPQPMFFPNLKKLLIGKCNKMKRV---LSLTNAHNLKQLEELTVASCN 871 (977)
Q Consensus 806 i~~~~~~~~~~~~~~~~~l~~l~~~~~~~~L~~L~l~~c~~l~~~---~~~~~~~~l~~L~~L~i~~C~ 871 (977)
.....-. .. +. ...++|++|++++|. +++. .....+..+++|++|++++|+
T Consensus 356 ~~~~~l~---~~------l~-----~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 356 AGVRELC---QG------LG-----QPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp HHHHHHH---HH------HT-----STTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccHHHHH---HH------Hc-----CCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 2110000 00 00 125789999998884 4421 012345668899999999885
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=8e-17 Score=172.23 Aligned_cols=208 Identities=25% Similarity=0.371 Sum_probs=167.6
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCc-CCCC-CCCcc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTN-ISSL-APSLP 486 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~~~ 486 (977)
...+|.....++++|+++++.+..++. +..+++|+.|++++|.+..+....|.++++|++|++++|. +..+ |..+.
T Consensus 23 l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~ 102 (285)
T 1ozn_A 23 LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH 102 (285)
T ss_dssp CSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTT
T ss_pred cccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhc
Confidence 444554446788999999998888764 5688999999999999888877778889999999999997 8877 55788
Q ss_pred cCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccE
Q 002037 487 CLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEE 563 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~ 563 (977)
.+++|++|++++|.+.. +..+..+++|++|++++|.+..+|.. ++.+++|++|++++|.+ ..+|...+..+++|++
T Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~ 181 (285)
T 1ozn_A 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDR 181 (285)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred CCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc-cccCHHHhcCccccCE
Confidence 99999999999999877 56688899999999999999988865 78899999999999974 4566655888999999
Q ss_pred EEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCc
Q 002037 564 LYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDD 629 (977)
Q Consensus 564 L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 629 (977)
|+++++... ......+..+++|+.|+++.+.....+...+..+++|+.|++.++.+
T Consensus 182 L~l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 182 LLLHQNRVA----------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp EECCSSCCC----------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred EECCCCccc----------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence 999887422 11235677788999999998888777766677788899988877643
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.72 E-value=1.4e-16 Score=181.62 Aligned_cols=235 Identities=20% Similarity=0.227 Sum_probs=189.7
Q ss_pred CCcCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-C
Q 002037 408 PGMKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-S 484 (977)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~ 484 (977)
+.....+|..-..+++.|++++|.+..++. +.++++|+.|++++|.+..++...|.++++|++|++++|.+..+|+ .
T Consensus 52 ~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 131 (440)
T 3zyj_A 52 RKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131 (440)
T ss_dssp SCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTT
T ss_pred CCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhH
Confidence 333455665556789999999999988753 5789999999999999999998889999999999999999999987 6
Q ss_pred cccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCC-CCcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCcc
Q 002037 485 LPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGS-RIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQ 560 (977)
Q Consensus 485 ~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~ 560 (977)
+..+++|++|+|++|.+.. +..+..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|. +..+++
T Consensus 132 ~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~ 208 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIK 208 (440)
T ss_dssp SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSS
T ss_pred hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcc
Confidence 8999999999999999987 457889999999999995 6777776 48899999999999997 456774 789999
Q ss_pred ccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceee
Q 002037 561 LEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMH 640 (977)
Q Consensus 561 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 640 (977)
|++|++++|.... .....+..+++|+.|+++.+.........+..+++|+.|++..|
T Consensus 209 L~~L~Ls~N~l~~----------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N------------- 265 (440)
T 3zyj_A 209 LDELDLSGNHLSA----------IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN------------- 265 (440)
T ss_dssp CCEEECTTSCCCE----------ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-------------
T ss_pred cCEEECCCCccCc----------cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-------------
Confidence 9999999874321 22356788999999999999888777777777777777766443
Q ss_pred ecccchhhHHHHHHHHhccceeEecCCCCcccccccccCCCCCccEEeeccccccc
Q 002037 641 LKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQR 696 (977)
Q Consensus 641 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~ 696 (977)
.+..++.-....+++|+.|+|++|.+..
T Consensus 266 ----------------------------~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 266 ----------------------------NLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ----------------------------CCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ----------------------------CCCccChhHhccccCCCEEEcCCCCccC
Confidence 2223333334567899999999986544
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=1.4e-16 Score=182.45 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=168.8
Q ss_pred cCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-Ccc
Q 002037 410 MKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLP 486 (977)
Q Consensus 410 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~ 486 (977)
....+|..-..+++.|++++|.+..++. +.++++|+.|++++|.+..++...|.++++|++|++++|.+..+|+ .+.
T Consensus 65 ~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 65 GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp CCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSS
T ss_pred CcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhc
Confidence 3445554446789999999999988743 5789999999999999999888889999999999999999999987 488
Q ss_pred cCCCCCeEecCCCCCCC--CccccCCCCccEEEccC-CCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCcccc
Q 002037 487 CLEKLRSLHLENTHLND--ASLIREFGELEVLILKG-SRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLE 562 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~-~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~ 562 (977)
.+++|++|+|++|.+.. +..+..+++|++|++++ +.+..+|.. +..+++|++|++++|.+ ..+|. +..+++|+
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~ 221 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPN--LTPLVGLE 221 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCC--CTTCTTCC
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-ccccc--cccccccc
Confidence 99999999999999987 45788999999999999 477888764 88999999999999985 45664 78999999
Q ss_pred EEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEec
Q 002037 563 ELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 563 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 627 (977)
+|++++|... ......+..+++|+.|+++.+.........+..+++|+.|++..|
T Consensus 222 ~L~Ls~N~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 222 ELEMSGNHFP----------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp EEECTTSCCS----------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECcCCcCc----------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 9999987432 122356788999999999998877776666666666666665443
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.5e-16 Score=170.09 Aligned_cols=191 Identities=20% Similarity=0.266 Sum_probs=146.2
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCCCC-
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLENTH- 500 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~- 500 (977)
+.++..++.+..+|.. -.++++.|++++|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 4566677777777752 357899999999999988888888999999999999999877 5688999999999999997
Q ss_pred CCC--CccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccc
Q 002037 501 LND--ASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEE 577 (977)
Q Consensus 501 l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 577 (977)
+.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+. .+|...++.+++|++|+++++....
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~---- 167 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS---- 167 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCE----
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccc----
Confidence 766 57788999999999999999877 455888999999999999754 5555557889999999998863211
Q ss_pred cccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEE
Q 002037 578 TANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVC 625 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 625 (977)
.....+..+++|+.|+++.+.........+..+++|+.|++.
T Consensus 168 ------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 168 ------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp ------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred ------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 111236667788888888776655544445455555555543
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=5.9e-17 Score=175.31 Aligned_cols=203 Identities=21% Similarity=0.208 Sum_probs=161.9
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCC--hhHHhcCCCccEEEccCCcCCCCCCCcc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIP--NAFFEHTREIKNLDLSSTNISSLAPSLP 486 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~~~~lp~~~~ 486 (977)
...+|.....++++|++.+|.+..++. +.++++|+.|++++|.+.... ...+..+++|++|++++|.+..+|..+.
T Consensus 19 l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~ 98 (306)
T 2z66_A 19 LTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98 (306)
T ss_dssp CSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEE
T ss_pred cccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcC
Confidence 444554445789999999999998886 468999999999999987552 3445679999999999999999999999
Q ss_pred cCCCCCeEecCCCCCCC-C--ccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCC-ccChhhhhcCccc
Q 002037 487 CLEKLRSLHLENTHLND-A--SLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQ-VIPPNVISKLSQL 561 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~-~~p~~~i~~L~~L 561 (977)
.+++|++|++++|.+.. + ..+..+++|++|++++|.+... |..+..+++|++|++++|.+.. .+|.. +..+++|
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L 177 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNL 177 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTC
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCC
Confidence 99999999999999877 3 5788999999999999999865 4558899999999999998655 45655 8999999
Q ss_pred cEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEE
Q 002037 562 EELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRV 624 (977)
Q Consensus 562 ~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 624 (977)
++|+++++.... .....+..+++|+.|+++.+.....+...+..+++|+.|++
T Consensus 178 ~~L~Ls~n~l~~----------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 230 (306)
T 2z66_A 178 TFLDLSQCQLEQ----------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230 (306)
T ss_dssp CEEECTTSCCCE----------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEEC
T ss_pred CEEECCCCCcCC----------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeEC
Confidence 999999874321 12356778899999999988766555444444445554444
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=1e-15 Score=179.55 Aligned_cols=255 Identities=19% Similarity=0.186 Sum_probs=163.3
Q ss_pred CccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCC
Q 002037 421 NCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 500 (977)
+++.++++++.+..+|.... ++|+.|++++|.+..++. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 46778888888887776433 788888888888887776 46788888888888888877 66888888888888
Q ss_pred CCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccccc
Q 002037 501 LNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETAN 580 (977)
Q Consensus 501 l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 580 (977)
+...+. .+.+|++|++++|+++.+|.. +++|++|++++|.+ ..+|. .+.+|+.|++++|....
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l~~------- 175 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTS------- 175 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSC-------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCCCC-------
Confidence 877333 677888888888888888874 47888888888864 44554 24677888887753211
Q ss_pred CcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccc
Q 002037 581 GQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTE 660 (977)
Q Consensus 581 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~ 660 (977)
+. ..+++|+.|+++.+....++. ..++|+.|.+..|.
T Consensus 176 -----l~--~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~-------------------------------- 212 (622)
T 3g06_A 176 -----LP--MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNR-------------------------------- 212 (622)
T ss_dssp -----CC--CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSC--------------------------------
T ss_pred -----Cc--ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCc--------------------------------
Confidence 11 335677888887766554332 13455555443321
Q ss_pred eeEecCCCCcccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccc
Q 002037 661 YLTLTRSSNLQDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLR 740 (977)
Q Consensus 661 ~L~l~~~~~~~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~ 740 (977)
+..++. .+++|+.|++++|.+.... ..+++|+.|+++++ .+..++. .+++|+
T Consensus 213 ---------l~~l~~----~~~~L~~L~Ls~N~L~~lp-----~~l~~L~~L~Ls~N-~L~~lp~---------~~~~L~ 264 (622)
T 3g06_A 213 ---------LTSLPA----LPSGLKELIVSGNRLTSLP-----VLPSELKELMVSGN-RLTSLPM---------LPSGLL 264 (622)
T ss_dssp ---------CSSCCC----CCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSCCCC---------CCTTCC
T ss_pred ---------ccccCC----CCCCCCEEEccCCccCcCC-----CCCCcCcEEECCCC-CCCcCCc---------ccccCc
Confidence 111111 2356666666666555422 33456666666665 2333222 256777
Q ss_pred eeeccCccCcceeeecccccccccccceEEEeecC
Q 002037 741 ELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCG 775 (977)
Q Consensus 741 ~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~ 775 (977)
.|+|+++ .++.++ ..+..+++|+.|++++++
T Consensus 265 ~L~Ls~N-~L~~lp---~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 265 SLSVYRN-QLTRLP---ESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EEECCSS-CCCSCC---GGGGGSCTTCEEECCSCC
T ss_pred EEeCCCC-CCCcCC---HHHhhccccCEEEecCCC
Confidence 7777766 444432 234567777777777753
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.69 E-value=6.3e-16 Score=163.60 Aligned_cols=197 Identities=22% Similarity=0.293 Sum_probs=161.9
Q ss_pred CccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cccCCCCCeEecCCC
Q 002037 421 NCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPCLEKLRSLHLENT 499 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~ 499 (977)
..+.++++++.+..+|... .++++.|++++|.+..++...|.++++|++|++++|.+..+|.. +..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4667888888888887632 36799999999999988887888999999999999999988875 478999999999999
Q ss_pred CCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 500 HLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 500 ~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
.+.. +..+..+++|++|++++|.++.+|.. ++.+++|++|++++|.+ ..+|...++.+++|++|+++++....
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~--- 171 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQLKR--- 171 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcC-CccCHhHccCCcccceeEecCCcCcE---
Confidence 9887 35678899999999999999988765 68999999999999974 45676667899999999998874211
Q ss_pred ccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCc
Q 002037 577 ETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDD 629 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 629 (977)
.....+..+++|+.|+++.+.....+...+..+++|+.|++.++.+
T Consensus 172 -------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 172 -------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp -------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred -------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 1123467788999999999888888877778889999999887754
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=6.5e-16 Score=181.15 Aligned_cols=258 Identities=19% Similarity=0.145 Sum_probs=192.5
Q ss_pred CccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEccCCC
Q 002037 443 RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSR 522 (977)
Q Consensus 443 ~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~ 522 (977)
++++|++++|.+..+|..++ ++|++|++++|.++.+|. .+++|++|+|++|.++..+. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCc
Confidence 58899999999998887553 789999999999999888 57899999999999887333 78999999999999
Q ss_pred CcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeee
Q 002037 523 IVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHV 602 (977)
Q Consensus 523 l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 602 (977)
++.+|. .+++|++|++++|. +..+|.. +++|++|++++|.... +. ..+.+|+.|+++.
T Consensus 113 l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~------------l~--~~~~~L~~L~L~~ 170 (622)
T 3g06_A 113 LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLAS------------LP--ALPSELCKLWAYN 170 (622)
T ss_dssp CCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSC------------CC--CCCTTCCEEECCS
T ss_pred CCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCC------------cC--CccCCCCEEECCC
Confidence 999987 67899999999997 4557754 5889999998874211 00 1245788888887
Q ss_pred cCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCcccccccccCCCC
Q 002037 603 SNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNLQDIGEIDVQGFT 682 (977)
Q Consensus 603 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~~~l~ 682 (977)
+....++ ..+++|+.|+ ++++ .+..++. .++
T Consensus 171 N~l~~l~----~~~~~L~~L~----------------------------------------Ls~N-~l~~l~~----~~~ 201 (622)
T 3g06_A 171 NQLTSLP----MLPSGLQELS----------------------------------------VSDN-QLASLPT----LPS 201 (622)
T ss_dssp SCCSCCC----CCCTTCCEEE----------------------------------------CCSS-CCSCCCC----CCT
T ss_pred CCCCCCc----ccCCCCcEEE----------------------------------------CCCC-CCCCCCC----ccc
Confidence 7665544 2244455444 4332 2222222 257
Q ss_pred CccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCcceeeeccccccc
Q 002037 683 GLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKVLTIWKGNHSVVY 762 (977)
Q Consensus 683 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L~~i~~~~~~~~~ 762 (977)
+|+.|++++|.+..... .+++|+.|+++++ .+..++ ..+++|+.|+++++ .++.+.. .
T Consensus 202 ~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N-~L~~lp---------~~l~~L~~L~Ls~N-~L~~lp~------~ 259 (622)
T 3g06_A 202 ELYKLWAYNNRLTSLPA-----LPSGLKELIVSGN-RLTSLP---------VLPSELKELMVSGN-RLTSLPM------L 259 (622)
T ss_dssp TCCEEECCSSCCSSCCC-----CCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSS-CCSCCCC------C
T ss_pred hhhEEECcCCcccccCC-----CCCCCCEEEccCC-ccCcCC---------CCCCcCcEEECCCC-CCCcCCc------c
Confidence 99999999997775432 3588999999987 344333 24799999999998 5665432 5
Q ss_pred ccccceEEEeecCCcccccchhHHhhcCCCceEEeccccccc
Q 002037 763 LKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKCDLME 804 (977)
Q Consensus 763 l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c~~l~ 804 (977)
+++|+.|++++| +++.++ ..+..+++|+.|+++++....
T Consensus 260 ~~~L~~L~Ls~N-~L~~lp--~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 260 PSGLLSLSVYRN-QLTRLP--ESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp CTTCCEEECCSS-CCCSCC--GGGGGSCTTCEEECCSCCCCH
T ss_pred cccCcEEeCCCC-CCCcCC--HHHhhccccCEEEecCCCCCC
Confidence 789999999996 788773 346789999999999987543
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=1.4e-17 Score=180.91 Aligned_cols=116 Identities=20% Similarity=0.275 Sum_probs=69.0
Q ss_pred EEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCCCccccCCCCccEEEccCCCCc
Q 002037 446 TLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIV 524 (977)
Q Consensus 446 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~ 524 (977)
.++++.+.+...+...+..+++|++|++++|.+..+++ .+..+++|++|++++|.+.....+..+++|++|++++|.++
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~ 93 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ 93 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccc
Confidence 33444444444444555566677777777777776653 56677777777777776665333666777777777777666
Q ss_pred ccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 525 ELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 525 ~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
.+|. .++|++|++++|.+.. ++. ..+++|++|+++++
T Consensus 94 ~l~~----~~~L~~L~l~~n~l~~-~~~---~~~~~L~~L~l~~N 130 (317)
T 3o53_A 94 ELLV----GPSIETLHAANNNISR-VSC---SRGQGKKNIYLANN 130 (317)
T ss_dssp EEEE----CTTCCEEECCSSCCSE-EEE---CCCSSCEEEECCSS
T ss_pred cccC----CCCcCEEECCCCccCC-cCc---cccCCCCEEECCCC
Confidence 6553 2667777777765332 322 22455555555443
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.67 E-value=8.9e-16 Score=163.20 Aligned_cols=206 Identities=21% Similarity=0.182 Sum_probs=166.5
Q ss_pred CCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCC-CCcccCC
Q 002037 413 GWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLA-PSLPCLE 489 (977)
Q Consensus 413 ~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~ 489 (977)
.+|..-..+++.|++++|.+..++. +..+++|++|++++|.+..++...|.++++|++|++++|.+..++ ..+..++
T Consensus 21 ~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (276)
T 2z62_A 21 KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (276)
T ss_dssp SCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc
Confidence 3444334679999999999988764 578899999999999999888888899999999999999999877 4789999
Q ss_pred CCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcc--cCccccCCCCCCEEEcCCCCCCCccChhhhhcCcccc---
Q 002037 490 KLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVE--LPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLE--- 562 (977)
Q Consensus 490 ~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~--- 562 (977)
+|++|++++|.+.. +..++.+++|++|++++|.+.. +|..++.+++|++|++++|.+. .++...+..+.+|+
T Consensus 101 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~l~ 179 (276)
T 2z62_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLN 179 (276)
T ss_dssp TCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCTTCC
T ss_pred cccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhccccc
Confidence 99999999999887 3468899999999999999986 7888999999999999999854 45544477777777
Q ss_pred -EEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcc
Q 002037 563 -ELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDY 630 (977)
Q Consensus 563 -~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 630 (977)
+|+++++..... ........+|+.|+++.+.....+...+..+++|+.|++..+.+.
T Consensus 180 l~L~ls~n~l~~~-----------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 180 LSLDLSLNPMNFI-----------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEECCSSCCCEE-----------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred eeeecCCCccccc-----------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 788887643211 112223347999999999988888888888999999999877543
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=1.3e-15 Score=164.33 Aligned_cols=190 Identities=22% Similarity=0.328 Sum_probs=164.6
Q ss_pred cccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 418 DLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 418 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
++++++.|++.++.+..++....+++|+.|++++|.+..++. +..+++|++|++++|.+..++ .+..+++|++|+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 478899999999999998888889999999999999998877 789999999999999998875 68899999999999
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccc
Q 002037 498 NTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEE 577 (977)
Q Consensus 498 ~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 577 (977)
+|.+.....+..+++|++|++++|.+..+|. ++.+++|++|++++|.+. .++. +..+++|++|+++++...
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~----- 186 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKIS----- 186 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCC-CChh--hcCCCCCCEEECCCCccC-----
Confidence 9999986669999999999999999998887 899999999999999754 4554 789999999999887421
Q ss_pred cccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 578 TANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
.+..+..+++|+.|+++.+.....+. +..+++|+.|++..+.
T Consensus 187 -------~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 187 -------DISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228 (308)
T ss_dssp -------CCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEE
T ss_pred -------cChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCe
Confidence 12337889999999999988776663 5678999999998874
No 74
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=4.9e-16 Score=167.64 Aligned_cols=156 Identities=28% Similarity=0.382 Sum_probs=118.1
Q ss_pred CCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccC
Q 002037 430 GNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIRE 509 (977)
Q Consensus 430 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~ 509 (977)
+.+........+++|+.|++.+|.+..++. +..+++|++|++++|.+..+++ +..+++|++|++++|.+..++.+..
T Consensus 29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~ 105 (308)
T 1h6u_A 29 SNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAG 105 (308)
T ss_dssp SSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTT
T ss_pred CCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcC
Confidence 333333333457788899999988887763 6788899999999998888877 8888899999999998888777888
Q ss_pred CCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCcccccc
Q 002037 510 FGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEV 589 (977)
Q Consensus 510 l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 589 (977)
+++|++|++++|.+..+|. +..+++|++|++++|.+. .++. ++.+++|++|++++|... .+..+
T Consensus 106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~------------~~~~l 169 (308)
T 1h6u_A 106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQYLSIGNAQVS------------DLTPL 169 (308)
T ss_dssp CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCC------------CCGGG
T ss_pred CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccC-cCcc--ccCCCCccEEEccCCcCC------------CChhh
Confidence 8999999999998888875 888889999999988754 4443 778888888888876321 11225
Q ss_pred ccCCCCcEEEeeecC
Q 002037 590 ASLTRLTVLYIHVSN 604 (977)
Q Consensus 590 ~~l~~L~~L~l~~~~ 604 (977)
..+++|+.|+++.+.
T Consensus 170 ~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 170 ANLSKLTTLKADDNK 184 (308)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cCCCCCCEEECCCCc
Confidence 666677777766554
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=2.7e-16 Score=166.57 Aligned_cols=149 Identities=24% Similarity=0.396 Sum_probs=109.1
Q ss_pred cccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cccCCCCCeEec
Q 002037 418 DLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPCLEKLRSLHL 496 (977)
Q Consensus 418 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L 496 (977)
.+.+++.+.+.++.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.+..+++. ++.+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 36777888888877777777777788888888888777653 466778888888888887777663 577788888888
Q ss_pred CCCCCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 497 ENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 497 ~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
++|.+.. +..++.+++|++|++++|.++.+|.. ++.+++|++|++++|.+. .+|+..++.+++|++|++++|
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCC
Confidence 8887776 34467778888888888877777655 467778888888877644 455544677777777777765
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.65 E-value=2e-15 Score=160.41 Aligned_cols=176 Identities=22% Similarity=0.283 Sum_probs=135.3
Q ss_pred EeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC-
Q 002037 426 SLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND- 503 (977)
Q Consensus 426 ~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~- 503 (977)
.-.+..+..+|... .+++++|++++|.+..++...|.++++|++|++++|.+..+++ .+..+++|++|++++|.+..
T Consensus 13 ~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 13 QCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp ECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 33344555666522 2579999999999998888788999999999999999998876 78999999999999999887
Q ss_pred -CccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCC-ccChhhhhcCccccEEEccCCcCCcccccccc
Q 002037 504 -ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQ-VIPPNVISKLSQLEELYVGNSFGDWEVEETAN 580 (977)
Q Consensus 504 -~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~-~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 580 (977)
+..+..+++|++|++++|.+..++. .++.+++|++|++++|.+.. .+|.. ++.+++|++|+++++.....
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~------ 164 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSI------ 164 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEE------
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcC------
Confidence 5678999999999999999998876 58999999999999998655 35766 89999999999988743211
Q ss_pred CcCccccccccCCCCc-EEEeeecCcccccc
Q 002037 581 GQNARFSEVASLTRLT-VLYIHVSNTKVLSV 610 (977)
Q Consensus 581 ~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~ 610 (977)
....+..+..++.|. .|+++.+.....+.
T Consensus 165 -~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~ 194 (276)
T 2z62_A 165 -YCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (276)
T ss_dssp -CGGGGHHHHTCTTCCEEEECCSSCCCEECT
T ss_pred -CHHHhhhhhhccccceeeecCCCcccccCc
Confidence 111223334444444 67777666554443
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=4.9e-17 Score=176.60 Aligned_cols=169 Identities=21% Similarity=0.175 Sum_probs=124.2
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEc
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLIL 518 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l 518 (977)
..+++|+.|++++|.+..+++..|.++++|++|++++|.+...++ +..+++|++|++++|.+.. +...++|++|++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~---l~~~~~L~~L~l 106 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE---LLVGPSIETLHA 106 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEE---EEECTTCCEEEC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcccc---ccCCCCcCEEEC
Confidence 356789999999999988888888999999999999998887665 8889999999999998765 224488999999
Q ss_pred cCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCcccccc-ccCCCCcE
Q 002037 519 KGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEV-ASLTRLTV 597 (977)
Q Consensus 519 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~ 597 (977)
++|.+..++.. .+++|++|++++|.+.. +++..++.+++|++|+++++.... .....+ ..+++|+.
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~----------~~~~~~~~~l~~L~~ 173 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITM-LRDLDEGCRSRVQYLDLKLNEIDT----------VNFAELAASSDTLEH 173 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCCCS-GGGBCTGGGSSEEEEECTTSCCCE----------EEGGGGGGGTTTCCE
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCCCC-ccchhhhccCCCCEEECCCCCCCc----------ccHHHHhhccCcCCE
Confidence 99998887653 47889999999998555 444337888999999998874321 112233 35778888
Q ss_pred EEeeecCccccccCCCCCCCCcceEEEEe
Q 002037 598 LYIHVSNTKVLSVDFDGPWTNLKRFRVCV 626 (977)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 626 (977)
|+++.+.....+... .+++|+.|+++.
T Consensus 174 L~L~~N~l~~~~~~~--~l~~L~~L~Ls~ 200 (317)
T 3o53_A 174 LNLQYNFIYDVKGQV--VFAKLKTLDLSS 200 (317)
T ss_dssp EECTTSCCCEEECCC--CCTTCCEEECCS
T ss_pred EECCCCcCccccccc--ccccCCEEECCC
Confidence 888877765543322 245555555443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.1e-15 Score=160.87 Aligned_cols=198 Identities=21% Similarity=0.213 Sum_probs=166.2
Q ss_pred ccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCC
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 498 (977)
+.+++.+++.++.+..+|... .++++.|++++|.+..++...|.++++|++|++++|.+..++.. +.+++|++|++++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred cCCccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 567889999999998887643 37899999999999988888899999999999999999988765 7899999999999
Q ss_pred CCCCC-CccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 499 THLND-ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 499 ~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
|.+.. |..+..+++|++|++++|+++.+|. .+..+++|++|++++|.+ ..+|.+.+..+++|++|+++++....
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~--- 162 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTE--- 162 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCSC---
T ss_pred CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcCCc---
Confidence 99988 7778899999999999999999985 589999999999999985 46777768899999999998874321
Q ss_pred ccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcc
Q 002037 577 ETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDY 630 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 630 (977)
.....+..+++|+.|+++.+....++.... ...+|+.+.+.+|.+.
T Consensus 163 -------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 -------LPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL 208 (290)
T ss_dssp -------CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred -------cCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCcc
Confidence 111345778999999999998887776654 4568999998877543
No 79
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=5.3e-18 Score=195.37 Aligned_cols=104 Identities=21% Similarity=0.363 Sum_probs=71.0
Q ss_pred CCccEEEccCCcCCCCCC--CcccCCCCCeEecCCCCCCC------CccccCCCCccEEEccCCCCccc-Cccc-cCCC-
Q 002037 466 REIKNLDLSSTNISSLAP--SLPCLEKLRSLHLENTHLND------ASLIREFGELEVLILKGSRIVEL-PNGI-GTVS- 534 (977)
Q Consensus 466 ~~Lr~L~l~~~~~~~lp~--~~~~l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~l-p~~i-~~l~- 534 (977)
+.|++|+++++.+...+. .+..+++|++|++++|.+.. +..+..+++|++|++++|.+... +..+ ..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 567888888888765432 26678888888888888764 34566778888888888877642 2222 2344
Q ss_pred ---CCCEEEcCCCCCCC----ccChhhhhcCccccEEEccCCc
Q 002037 535 ---NLKLLDLSNNLFLQ----VIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 535 ---~L~~L~l~~~~~~~----~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
+|++|++++|.+.. .+|.. +..+++|++|+++++.
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNL 124 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSB
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHH-HccCCceeEEECCCCc
Confidence 68888888887542 33444 6778888888887763
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=5.4e-15 Score=156.38 Aligned_cols=185 Identities=22% Similarity=0.375 Sum_probs=155.9
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-Cccc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPC 487 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~ 487 (977)
...+|..-..+++.|++++|.+..++. +..+++|++|++++|.+..++...|.++++|++|++++|.+..+|. .+..
T Consensus 28 l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 107 (270)
T 2o6q_A 28 LTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQ 107 (270)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHccc
Confidence 344554445679999999999988875 5789999999999999999999889999999999999999999887 5689
Q ss_pred CCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEE
Q 002037 488 LEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEEL 564 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L 564 (977)
+++|++|++++|.+.. +..++.+++|++|++++|.+..+|.. ++.+++|++|++++|.+ ..+|...+..+++|++|
T Consensus 108 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTL 186 (270)
T ss_dssp CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEE
T ss_pred ccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEE
Confidence 9999999999999988 45688999999999999999999876 78999999999999985 45666558899999999
Q ss_pred EccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcc
Q 002037 565 YVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTK 606 (977)
Q Consensus 565 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 606 (977)
+++++.... .....+..+++|+.|+++.+...
T Consensus 187 ~L~~N~l~~----------~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 187 KLDNNQLKR----------VPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp ECCSSCCSC----------CCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCcCCc----------CCHHHhccccCCCEEEecCCCee
Confidence 999874321 11234677889999999987643
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.61 E-value=1.2e-15 Score=175.35 Aligned_cols=151 Identities=22% Similarity=0.167 Sum_probs=107.1
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEcc
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILK 519 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~ 519 (977)
.+++|+.|++++|.+..+++..|..+++|++|++++|.+...++ ++.+++|++|+|++|.+... ...++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l---~~~~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE---EECTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC---CCCCCcCEEECc
Confidence 45578888888888888877777888888888888888876655 78888888888888876652 233788888888
Q ss_pred CCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccc-cCCCCcEE
Q 002037 520 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVA-SLTRLTVL 598 (977)
Q Consensus 520 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L 598 (977)
+|.+..+|. ..+++|++|++++|.+....|.. ++.+++|++|++++|.... .....+. .+++|+.|
T Consensus 108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~----------~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT----------VNFAELAASSDTLEHL 174 (487)
T ss_dssp SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCE----------EEGGGGGGGTTTCCEE
T ss_pred CCcCCCCCc--cccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCC----------cChHHHhhhCCcccEE
Confidence 888887765 35678888888888765544444 7778888888887764221 1123333 56677777
Q ss_pred EeeecCccc
Q 002037 599 YIHVSNTKV 607 (977)
Q Consensus 599 ~l~~~~~~~ 607 (977)
+++.+....
T Consensus 175 ~Ls~N~l~~ 183 (487)
T 3oja_A 175 NLQYNFIYD 183 (487)
T ss_dssp ECTTSCCCE
T ss_pred ecCCCcccc
Confidence 776655443
No 82
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=4.8e-16 Score=178.79 Aligned_cols=173 Identities=18% Similarity=0.215 Sum_probs=140.1
Q ss_pred ccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEec
Q 002037 419 LQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHL 496 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L 496 (977)
.++++.|++++|.+..++. +..+++|++|++++|.+...++ +..+++|++|++++|.+..+|.. ++|++|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 4589999999999988763 5789999999999999887665 78999999999999999877643 89999999
Q ss_pred CCCCCCCCccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccc
Q 002037 497 ENTHLNDASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEV 575 (977)
Q Consensus 497 ~~~~l~~~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 575 (977)
++|.+..... ..+++|++|++++|.+..+ |..++.+++|++|++++|.+....|......+++|++|++++|....
T Consensus 107 ~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~-- 183 (487)
T 3oja_A 107 ANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-- 183 (487)
T ss_dssp CSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--
T ss_pred cCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc--
Confidence 9999988322 3578999999999999977 45689999999999999997776776633489999999999874321
Q ss_pred cccccCcCccccccccCCCCcEEEeeecCcccccc
Q 002037 576 EETANGQNARFSEVASLTRLTVLYIHVSNTKVLSV 610 (977)
Q Consensus 576 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 610 (977)
+.....+++|+.|+++.+.....++
T Consensus 184 ----------~~~~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 184 ----------VKGQVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp ----------EECCCCCTTCCEEECCSSCCCEECG
T ss_pred ----------ccccccCCCCCEEECCCCCCCCCCH
Confidence 1234457888888888776554443
No 83
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.60 E-value=4.1e-14 Score=156.24 Aligned_cols=287 Identities=14% Similarity=0.086 Sum_probs=172.1
Q ss_pred ccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCC------CHHHHHHHHHH
Q 002037 71 VPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTP------DVKRVQDEIAR 144 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~------~~~~~~~~i~~ 144 (977)
..++||+++++++.+++..+ +++.|+|++|+|||||++++++... ++|+++.... +...+.+.+.+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP----GILIDCRELYAERGHITREELIKELQS 83 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS----EEEEEHHHHHHTTTCBCHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC----cEEEEeecccccccCCCHHHHHHHHHH
Confidence 46899999999999988764 5999999999999999999998742 7788765432 55566666665
Q ss_pred Hhhhc-----------------cc--cchHHHHHHHHHHHHHccceEEEEecCcccccc---------ccccccCCCCCC
Q 002037 145 FLNTE-----------------LE--GDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD---------LAVVGIPYGEEH 196 (977)
Q Consensus 145 ~l~~~-----------------~~--~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~~~l~~~~~~~~ 196 (977)
.+... .. ..........+.+.....++++||+||++.... +..+. .+....
T Consensus 84 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~-~~~~~~ 162 (350)
T 2qen_A 84 TISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFA-YAYDSL 162 (350)
T ss_dssp HSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHH-HHHHHC
T ss_pred HHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHH-HHHHhc
Confidence 54320 00 011122333344433322489999999987543 11111 111112
Q ss_pred CCeEEEEecCChHHHhhc------------cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 197 KGCKIILTSRFKEVCDEM------------ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 197 ~gs~iivTtR~~~v~~~~------------~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
++.++|+|++...+...+ .....+++.+|+.+|+.+++.+.+.... .....+.+..|++.++|+|++
T Consensus 163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~-~~~~~~~~~~i~~~tgG~P~~ 241 (350)
T 2qen_A 163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN-LDVPENEIEEAVELLDGIPGW 241 (350)
T ss_dssp TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHHTTCHHH
T ss_pred CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHH
Confidence 478899999876542211 1124789999999999999987643111 112245788999999999999
Q ss_pred HHHHHHHhcC-CChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccc---hhhHHHHHhhhcCCCCCCCcChHHHHH
Q 002037 265 IVIIGTALRH-KPVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQL---ETVAKSCLQFSCLFPPYYSVSMEEFVI 340 (977)
Q Consensus 265 i~~~~~~l~~-~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~fl~~~~fp~~~~i~~~~li~ 340 (977)
+..++..+.. .+...+. ..+. +.+...+.-.+..+ ++..+..+..+|. + .+....+..
T Consensus 242 l~~~~~~~~~~~~~~~~~---~~~~-----------~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g--~~~~~~l~~ 303 (350)
T 2qen_A 242 LVVFGVEYLRNGDFGRAM---KRTL-----------EVAKGLIMGELEELRRRSPRYVDILRAIAL--G--YNRWSLIRD 303 (350)
T ss_dssp HHHHHHHHHHHCCHHHHH---HHHH-----------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--T--CCSHHHHHH
T ss_pred HHHHHHHHhccccHhHHH---HHHH-----------HHHHHHHHHHHHHHHhCChhHHHHHHHHHh--C--CCCHHHHHH
Confidence 9999876532 2222221 1111 11111121122223 6788888888887 2 244455543
Q ss_pred HHhhhcccccccchhhhhhcHHHHHHHHHhcccccCCCCcccccc-hhhHHHHHH
Q 002037 341 HGLVDRLFPQVGLLGEVGNRVHPVVLRLISSSLLLEGDRESCFRI-HDDTRKVVK 394 (977)
Q Consensus 341 ~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~m-Hdlv~~~a~ 394 (977)
..-+. . ...+ ...+..+++.|.+.+++...+ +.|.+ |++++++.+
T Consensus 304 ~~~~~-~--~~~~----~~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 304 YLAVK-G--TKIP----EPRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHT-T--CCCC----HHHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred HHHHH-h--CCCC----HHHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 32111 0 0001 123445789999999996542 34554 667776653
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.59 E-value=2e-14 Score=152.22 Aligned_cols=179 Identities=20% Similarity=0.286 Sum_probs=113.3
Q ss_pred CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccE
Q 002037 438 QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEV 515 (977)
Q Consensus 438 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~ 515 (977)
...+++|+.|++.+|.+..++. +..+++|++|++++|.+..++ .++.+++|++|++++|.+.. +..++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 3455667777777776665543 556777777777777766643 56667777777777777666 234566777777
Q ss_pred EEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCC
Q 002037 516 LILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTR 594 (977)
Q Consensus 516 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 594 (977)
|++++|.+..+|.. ++.+++|++|++++|.+. .+|+..++.+++|++|++++|... ......+..+++
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~----------~~~~~~~~~l~~ 182 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ----------SLPEGVFDKLTQ 182 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC----------CCCTTTTTTCTT
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcC----------ccCHHHhcCCcc
Confidence 77777777766654 566777777777777533 444444566777777777665321 111123456667
Q ss_pred CcEEEeeecCccccccCCCCCCCCcceEEEEecCcc
Q 002037 595 LTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDY 630 (977)
Q Consensus 595 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 630 (977)
|+.|+++.+.....+...+..+++|+.|++..|.+.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 777777776666666665666677777777666443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=2.5e-14 Score=149.50 Aligned_cols=173 Identities=21% Similarity=0.337 Sum_probs=133.1
Q ss_pred CccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCC
Q 002037 421 NCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENT 499 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~ 499 (977)
..+.++.+++.+..+|.... +.++.|++++|.+..++...|.++++|++|++++|.+..+++ .+..+++|++|++++|
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 45677888888888876432 688999999999888888788889999999999999888766 5788899999999999
Q ss_pred CCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccc
Q 002037 500 HLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVE 576 (977)
Q Consensus 500 ~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~ 576 (977)
.+.. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+ ..+|+..++.+++|++|+++++....
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~--- 169 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQS--- 169 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSC---
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCc---
Confidence 8887 45678889999999999998888876 57889999999999874 45665557888888888888764211
Q ss_pred ccccCcCccccccccCCCCcEEEeeecCc
Q 002037 577 ETANGQNARFSEVASLTRLTVLYIHVSNT 605 (977)
Q Consensus 577 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 605 (977)
.....+..+++|+.|+++.+..
T Consensus 170 -------~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 170 -------VPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp -------CCTTTTTTCTTCCEEECCSCCB
T ss_pred -------cCHHHHhCCCCCCEEEeeCCce
Confidence 1113455666777777766543
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.59 E-value=1.1e-14 Score=155.31 Aligned_cols=175 Identities=19% Similarity=0.225 Sum_probs=141.0
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCC-CCcccCCCCCeEecCCCCCCCCccccCCCCccEEE
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLA-PSLPCLEKLRSLHLENTHLNDASLIREFGELEVLI 517 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~ 517 (977)
.++++++.+++.++.+..+|..+ .+.+++|++++|.+..++ ..+..+++|++|++++|.+......+.+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 45678999999999999988765 368999999999998775 47899999999999999998854458999999999
Q ss_pred ccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcE
Q 002037 518 LKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTV 597 (977)
Q Consensus 518 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 597 (977)
+++|.+..+|..+..+++|++|++++|.+. .+|++.+..+++|++|+++++.... .....+..+++|+.
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~----------~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKT----------LPPGLLTPTPKLEK 152 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCC----------CCTTTTTTCTTCCE
T ss_pred CCCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCc----------cChhhcccccCCCE
Confidence 999999999999999999999999999854 5665558999999999998874321 11233567888899
Q ss_pred EEeeecCccccccCCCCCCCCcceEEEEec
Q 002037 598 LYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 627 (977)
|+++.+....++...+..+++|+.|++..+
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCC
Confidence 998888777776666666666666665443
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=5.6e-15 Score=153.25 Aligned_cols=136 Identities=21% Similarity=0.352 Sum_probs=99.1
Q ss_pred CCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCc-CCCCCC-CcccCCCCCeEecCC-CCCCC--Cc
Q 002037 431 NVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTN-ISSLAP-SLPCLEKLRSLHLEN-THLND--AS 505 (977)
Q Consensus 431 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~~~~l~~L~~L~L~~-~~l~~--~~ 505 (977)
.+..+|. -.++++.|++++|.+..++...|.++++|++|++++|. +..+++ .+..+++|++|++++ |.+.. +.
T Consensus 22 ~l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 22 DIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp SCSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred CccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 3555665 33477888888888777777777778888888888886 777766 677788888888887 67766 34
Q ss_pred cccCCCCccEEEccCCCCcccCccccCCCCCC---EEEcCCCCCCCccChhhhhcCcccc-EEEccCC
Q 002037 506 LIREFGELEVLILKGSRIVELPNGIGTVSNLK---LLDLSNNLFLQVIPPNVISKLSQLE-ELYVGNS 569 (977)
Q Consensus 506 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~~~~~p~~~i~~L~~L~-~L~l~~~ 569 (977)
.+..+++|++|++++|.++.+|. ++.+++|+ +|++++|.....+|...+..+++|+ +|+++++
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred HhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 67778888888888888877776 77777777 8888887224556655577777777 7777665
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=9.6e-15 Score=155.97 Aligned_cols=172 Identities=24% Similarity=0.408 Sum_probs=146.1
Q ss_pred cccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 418 DLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 418 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
.+.+++.|++.+|.+..++....+++|+.|++++|.+..++. +.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 377899999999999888888889999999999999988876 7899999999999999988754 8899999999999
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccc
Q 002037 498 NTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEE 577 (977)
Q Consensus 498 ~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 577 (977)
+|.+...+.+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +++ +..+++|++|++++|...
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~L~~N~i~----- 191 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS----- 191 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc-chh--hcCCCccCEEECCCCcCC-----
Confidence 99998888899999999999999999988 568999999999999998554 444 789999999999887421
Q ss_pred cccCcCccccccccCCCCcEEEeeecCcccc
Q 002037 578 TANGQNARFSEVASLTRLTVLYIHVSNTKVL 608 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 608 (977)
.+..+..+++|+.|+++.+.....
T Consensus 192 -------~l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 192 -------DLRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp -------BCGGGTTCTTCSEEEEEEEEEECC
T ss_pred -------CChhhccCCCCCEEECcCCcccCC
Confidence 134578888999999988765443
No 89
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=1.4e-15 Score=164.55 Aligned_cols=195 Identities=18% Similarity=0.156 Sum_probs=107.0
Q ss_pred cCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCC--CChhHH------hcCCCccEEEccCCcCC-CCCCCc--ccC
Q 002037 420 QNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFAD--IPNAFF------EHTREIKNLDLSSTNIS-SLAPSL--PCL 488 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~--~~~~~~------~~l~~Lr~L~l~~~~~~-~lp~~~--~~l 488 (977)
.+++.+.+.+|.+ .+|... ...++.|++++|.+.. ++.... .++++|++|++++|.+. .+|..+ +.+
T Consensus 43 ~~L~~l~l~~n~l-~~p~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 43 RSLEYLLKRVDTE-ADLGQF-TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp EECTTHHHHCCTT-CCCHHH-HHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CCceeEeeccccc-ccHHHH-HHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 3455555555555 333310 0116666666665532 222221 14677777777777766 455554 677
Q ss_pred CCCCeEecCCCCCCC-CccccCC-----CCccEEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCCc--cChhhh--hc
Q 002037 489 EKLRSLHLENTHLND-ASLIREF-----GELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQV--IPPNVI--SK 557 (977)
Q Consensus 489 ~~L~~L~L~~~~l~~-~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~--~p~~~i--~~ 557 (977)
++|++|++++|.+.. |..++.+ ++|++|++++|.+..+| ..++.+++|++|++++|.+... +|.. + +.
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~ 199 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLK 199 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTS
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhcc
Confidence 777777777777665 5555555 67777777777777666 5567777777777777764433 2222 2 56
Q ss_pred CccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccc-cCCCCCCCCcceEEE
Q 002037 558 LSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLS-VDFDGPWTNLKRFRV 624 (977)
Q Consensus 558 L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l 624 (977)
+++|++|++++|...... .....-+..+++|+.|+++.+...... ......+++|+.|++
T Consensus 200 l~~L~~L~L~~N~l~~~~-------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPS-------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CTTCCEEECTTSCCCCHH-------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEEC
T ss_pred CCCCCEEECCCCcCcchH-------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEEC
Confidence 677777777665321000 000011235567777777766655433 223333444554444
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=8e-15 Score=152.07 Aligned_cols=199 Identities=15% Similarity=0.261 Sum_probs=161.8
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCC-CCCCChhHHhcCCCccEEEccC-CcCCCCCC-Cc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNP-FADIPNAFFEHTREIKNLDLSS-TNISSLAP-SL 485 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp~-~~ 485 (977)
...+|. -..+++.|++.+|.+..++. +..+++|+.|++++|. +..++...|.++++|++|++++ |.+..+|+ .+
T Consensus 23 l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 23 IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 334444 44589999999999998876 5689999999999997 8888888889999999999998 99998885 78
Q ss_pred ccCCCCCeEecCCCCCCCCccccCCCCcc---EEEccCC-CCcccCcc-ccCCCCCC-EEEcCCCCCCCccChhhhhcCc
Q 002037 486 PCLEKLRSLHLENTHLNDASLIREFGELE---VLILKGS-RIVELPNG-IGTVSNLK-LLDLSNNLFLQVIPPNVISKLS 559 (977)
Q Consensus 486 ~~l~~L~~L~L~~~~l~~~~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~~~~~p~~~i~~L~ 559 (977)
..+++|++|++++|.+...+.++.+++|+ +|++++| .+..+|.. +..+++|+ +|++++|.+. .+|...+.. +
T Consensus 102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~ 179 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-T 179 (239)
T ss_dssp ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-C
T ss_pred CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-C
Confidence 89999999999999998844488888888 9999999 99999875 88999999 9999999854 788774444 8
Q ss_pred cccEEEccCCc-CCccccccccCcCccccccccC-CCCcEEEeeecCccccccCCCCCCCCcceEEEE
Q 002037 560 QLEELYVGNSF-GDWEVEETANGQNARFSEVASL-TRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVC 625 (977)
Q Consensus 560 ~L~~L~l~~~~-~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 625 (977)
+|++|+++++. .. .+ ....+..+ ++|+.|+++.+.....+.. .+++|+.|.+.
T Consensus 180 ~L~~L~L~~n~~l~-~i---------~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~ 234 (239)
T 2xwt_C 180 KLDAVYLNKNKYLT-VI---------DKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIAR 234 (239)
T ss_dssp EEEEEECTTCTTCC-EE---------CTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECT
T ss_pred CCCEEEcCCCCCcc-cC---------CHHHhhccccCCcEEECCCCccccCChh---HhccCceeecc
Confidence 99999999873 21 11 11346677 8999999998887766654 36677776653
No 91
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=1.3e-13 Score=152.60 Aligned_cols=284 Identities=13% Similarity=0.093 Sum_probs=167.9
Q ss_pred ccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC-----CCHHHHHHHHHH
Q 002037 71 VPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT-----PDVKRVQDEIAR 144 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~-----~~~~~~~~~i~~ 144 (977)
..++||+++++.+.+ +.. +++.|+|++|+|||||++++++. .. ..+|+++... .+...+...+.+
T Consensus 13 ~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDLRKFEERNYISYKDFLLELQK 83 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEGGGGTTCSCCCHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEchhhccccCCCHHHHHHHHHH
Confidence 468899999999999 754 49999999999999999999988 32 2588887642 344555555555
Q ss_pred Hhhh------------------cccc---c--h---HHHHHHHHHHHHHc-c-ceEEEEecCccccc-----cccccccC
Q 002037 145 FLNT------------------ELEG---D--V---EVLRAAFLSERLKR-Q-KRVLIILDDLWGKL-----DLAVVGIP 191 (977)
Q Consensus 145 ~l~~------------------~~~~---~--~---~~~~~~~l~~~l~~-~-~~~LlvlDdv~~~~-----~~~~l~~~ 191 (977)
.+.. ..+. . . .......+.+.+.+ . ++++|||||++... ++..+...
T Consensus 84 ~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l~~ 163 (357)
T 2fna_A 84 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAY 163 (357)
T ss_dssp HHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHH
T ss_pred HHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHHHH
Confidence 4421 0000 0 0 00112233333432 1 48999999997642 22111111
Q ss_pred CCCCCCCeEEEEecCChHHHhh----------cc-C-CceEEccCCCHHHHHHHHHHhcC--CCCCChhhHHHHHHHHHH
Q 002037 192 YGEEHKGCKIILTSRFKEVCDE----------ME-S-TNYVQVEELTDEDRLILFKKKAG--LPEGTKAFDRAAEEVVRQ 257 (977)
Q Consensus 192 ~~~~~~gs~iivTtR~~~v~~~----------~~-~-~~~~~l~~L~~~~~~~lf~~~~~--~~~~~~~~~~~~~~i~~~ 257 (977)
+.....+.++|+|+|....... .. . ...+++.+|+.+|+.+++.+.+. +.... . ...|++.
T Consensus 164 ~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-~----~~~i~~~ 238 (357)
T 2fna_A 164 AYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-D----YEVVYEK 238 (357)
T ss_dssp HHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC-C----HHHHHHH
T ss_pred HHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC-c----HHHHHHH
Confidence 1112247889999998754221 11 1 25789999999999999987642 11111 1 1789999
Q ss_pred hCCChhHHHHHHHHhc-CCChhHHHHH-HHHHhhCCCCCCCCchHHHHHHHH-Hhh--ccchhhHHHHHhhhcCCCCCCC
Q 002037 258 CGKLPNAIVIIGTALR-HKPVREWNEA-IKRKKASTPINVEGIPEEVVLCVA-LGY--DQLETVAKSCLQFSCLFPPYYS 332 (977)
Q Consensus 258 ~~glPLai~~~~~~l~-~~~~~~w~~~-l~~l~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~~fl~~~~fp~~~~ 332 (977)
++|+|+++..++..+. ..+...|..- .+... ..+...+. +.+ ..+++..+..+..+|. + .
T Consensus 239 t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~--g-~- 303 (357)
T 2fna_A 239 IGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-----------KLILKEFENFLHGREIARKRYLNIMRTLSK--C-G- 303 (357)
T ss_dssp HCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT--C-B-
T ss_pred hCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-----------HHHHHHHHHHhhccccccHHHHHHHHHHHc--C-C-
Confidence 9999999999988764 2233333211 11100 11222222 222 1688899999998887 2 2
Q ss_pred cChHHHHHHHh-hhcccccccchhhhhhcHHHHHHHHHhcccccCCCCccccc-chhhHHHHH
Q 002037 333 VSMEEFVIHGL-VDRLFPQVGLLGEVGNRVHPVVLRLISSSLLLEGDRESCFR-IHDDTRKVV 393 (977)
Q Consensus 333 i~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~~~~~~~~-mHdlv~~~a 393 (977)
....+....- ..|. .. ....+..+++.|.+.++|...+ +.|. .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~---~~----~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGI---EI----SDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCS---CC----CHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCC---CC----CHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 4444432110 0110 00 1123445789999999996543 4566 467777653
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=6.4e-14 Score=146.33 Aligned_cols=162 Identities=22% Similarity=0.338 Sum_probs=140.0
Q ss_pred CCcCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-C
Q 002037 408 PGMKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-S 484 (977)
Q Consensus 408 ~~~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~ 484 (977)
+.....+|..-..+++.|++++|.+..++. +..+++|++|++++|.+..++...|..+++|++|++++|.+..+|+ .
T Consensus 23 ~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 102 (251)
T 3m19_A 23 GKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV 102 (251)
T ss_dssp TCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhH
Confidence 333445554445789999999999988765 5689999999999999999998889999999999999999999886 5
Q ss_pred cccCCCCCeEecCCCCCCC-C-ccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccc
Q 002037 485 LPCLEKLRSLHLENTHLND-A-SLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQL 561 (977)
Q Consensus 485 ~~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L 561 (977)
+..+++|++|+|++|.+.. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++|.+. .+|+..+..+++|
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L 181 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKL 181 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTC
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCC
Confidence 7899999999999999988 3 457899999999999999999987 5899999999999999855 5666558999999
Q ss_pred cEEEccCCc
Q 002037 562 EELYVGNSF 570 (977)
Q Consensus 562 ~~L~l~~~~ 570 (977)
++|+++++.
T Consensus 182 ~~L~l~~N~ 190 (251)
T 3m19_A 182 QTITLFGNQ 190 (251)
T ss_dssp CEEECCSCC
T ss_pred CEEEeeCCc
Confidence 999998874
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=1.2e-14 Score=155.25 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=153.5
Q ss_pred ccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCC
Q 002037 422 CEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l 501 (977)
+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|++|++++|.+..+++ +..+++|++|++++|.+
T Consensus 26 ~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred HHHHHhcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcC
Confidence 33334444455444444568899999999999988864 7889999999999999999887 99999999999999999
Q ss_pred CCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccC
Q 002037 502 NDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANG 581 (977)
Q Consensus 502 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~ 581 (977)
..++.++.+++|++|++++|.+..++ .+..+++|++|++++|.+.. + .. ++.+++|++|++++|...
T Consensus 103 ~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~-l~~l~~L~~L~L~~N~l~--------- 169 (291)
T 1h6t_A 103 KDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TV-LSRLTKLDTLSLEDNQIS--------- 169 (291)
T ss_dssp CCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCC-C-GG-GGGCTTCSEEECCSSCCC---------
T ss_pred CCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCc-c-hh-hccCCCCCEEEccCCccc---------
Confidence 99778999999999999999999885 58999999999999998554 4 34 899999999999987421
Q ss_pred cCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 582 QNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 582 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
.+..+..+++|+.|+++.+.....+. +..+++|+.|++..+.
T Consensus 170 ---~~~~l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 170 ---DIVPLAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 211 (291)
T ss_dssp ---CCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEE
T ss_pred ---cchhhcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCCc
Confidence 11237889999999999998776643 5678999999998764
No 94
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.56 E-value=2.5e-14 Score=167.56 Aligned_cols=175 Identities=25% Similarity=0.417 Sum_probs=152.2
Q ss_pred cccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 418 DLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 418 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
.+.+++.|++.++.+..++.+..+++|+.|++++|.+..+++ +..+++|+.|+|++|.+..+| .+..+++|++|+|+
T Consensus 41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 477899999999999999888899999999999999998876 789999999999999999876 78999999999999
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccc
Q 002037 498 NTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEE 577 (977)
Q Consensus 498 ~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 577 (977)
+|.+..++.+..+++|+.|+|++|.+..+ ..++.+++|++|+|++|.+.. +++ +..+++|++|++++|...
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~----- 188 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHIS----- 188 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC-----
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCC-----
Confidence 99999988899999999999999999988 569999999999999998655 443 789999999999987421
Q ss_pred cccCcCccccccccCCCCcEEEeeecCccccccC
Q 002037 578 TANGQNARFSEVASLTRLTVLYIHVSNTKVLSVD 611 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 611 (977)
.+..+..+++|+.|+++.+.....+..
T Consensus 189 -------~l~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 189 -------DLRALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp -------BCGGGTTCTTCSEEECCSEEEECCCCC
T ss_pred -------CChHHccCCCCCEEEccCCcCcCCccc
Confidence 135688899999999998876554433
No 95
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=4.2e-14 Score=160.00 Aligned_cols=303 Identities=14% Similarity=0.083 Sum_probs=177.8
Q ss_pred ccccchHHHHHHHHHHh-hc---C-CCceeEEEE--EcCCCChHHHHHHHHHhh-cC-----CCC-EEEEEEeCCCCCHH
Q 002037 71 VPLKSALEVIKSVMKLL-KD---N-SISINIIGV--YGSGGIGKTTLMKQVMKQ-EI-----PFD-KVIFVRVTQTPDVK 136 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l-~~---~-~~~~~vi~I--~G~gGiGKTtLa~~v~~~-~~-----~f~-~~~wv~~~~~~~~~ 136 (977)
..++||+++++++...+ .. + ....+.+.| +|++|+||||||+.+++. .. .|+ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 35889999999998888 42 2 012456666 999999999999999988 32 233 46788877777888
Q ss_pred HHHHHHHHHhhhccc--cchHHHHHHHHHHHHH-ccceEEEEecCcccccc--------ccccccCC---CCCC--CCeE
Q 002037 137 RVQDEIARFLNTELE--GDVEVLRAAFLSERLK-RQKRVLIILDDLWGKLD--------LAVVGIPY---GEEH--KGCK 200 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~--~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~--------~~~l~~~~---~~~~--~gs~ 200 (977)
.++..++..++.... +.........+.+.+. .+++++|||||++.... +..+...+ ...+ ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999998875432 2222333445555553 36799999999987422 21111111 1112 4556
Q ss_pred EEEecCChHHHhhcc---------CCceEEccCCCHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHhC------CChhH
Q 002037 201 IILTSRFKEVCDEME---------STNYVQVEELTDEDRLILFKKKAGL-PEGTKAFDRAAEEVVRQCG------KLPNA 264 (977)
Q Consensus 201 iivTtR~~~v~~~~~---------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~------glPLa 264 (977)
||+||+...+...+. ....+++++++.++++++|..++.. .....-..+....|++.++ |.|..
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~ 261 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 261 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHH
Confidence 888887665432111 1123999999999999999765431 0111223567889999999 99976
Q ss_pred HHHHHHHh---c---CC---ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHhhhcCCC--CCCCc
Q 002037 265 IVIIGTAL---R---HK---PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSCLFP--PYYSV 333 (977)
Q Consensus 265 i~~~~~~l---~---~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~fp--~~~~i 333 (977)
+..+.... + +. +.+.+..++..... ...+.-++..||++.+.++..++.+. ++..+
T Consensus 262 ~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~ 328 (412)
T 1w5s_A 262 AIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIHELIILRLIAEATLGGMEWI 328 (412)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSB
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCc
Confidence 55544321 1 11 22333333322110 12334467889999999888777543 33456
Q ss_pred ChHHHHHHHhhh--cccccccchhhhhhcHHHHHHHHHhcccccCC----CCcccccchhhH
Q 002037 334 SMEEFVIHGLVD--RLFPQVGLLGEVGNRVHPVVLRLISSSLLLEG----DRESCFRIHDDT 389 (977)
Q Consensus 334 ~~~~li~~w~a~--g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~~----~~~~~~~mHdlv 389 (977)
...++...+... .... .... ....+..++++|.+.+++... +..+.+++|.+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 329 NAGLLRQRYEDASLTMYN-VKPR--GYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp CHHHHHHHHHHHHHHHSC-CCCC--CHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cHHHHHHHHHHHHHhhcC-CCCC--CHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 666655443211 1111 0000 112344578999999999542 234456666554
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.54 E-value=2.4e-14 Score=154.92 Aligned_cols=194 Identities=19% Similarity=0.209 Sum_probs=146.3
Q ss_pred ccCccEEEeccCCCcc-CCCC---CCCCCccEEEccCCCCCCCChhHHhcC-----CCccEEEccCCcCCCCC-CCcccC
Q 002037 419 LQNCEKLSLMDGNVTA-LPDQ---PKCPRLTTLFLQNNPFADIPNAFFEHT-----REIKNLDLSSTNISSLA-PSLPCL 488 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~lp-~~~~~l 488 (977)
+.++++|++++|.+.. +|.. ..+++|+.|++++|.+...+ ..+..+ ++|++|++++|.+..++ ..++.+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5688899999888873 5542 67889999999999988874 555666 89999999999998887 588899
Q ss_pred CCCCeEecCCCCCCC----Cccc--cCCCCccEEEccCCCCcccC---cc-ccCCCCCCEEEcCCCCCCCccChhhhhcC
Q 002037 489 EKLRSLHLENTHLND----ASLI--REFGELEVLILKGSRIVELP---NG-IGTVSNLKLLDLSNNLFLQVIPPNVISKL 558 (977)
Q Consensus 489 ~~L~~L~L~~~~l~~----~~~i--~~l~~L~~L~l~~~~l~~lp---~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L 558 (977)
++|++|++++|.+.. +..+ +.+++|++|++++|.++.+| .. +..+++|++|++++|.+....|...+..+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l 252 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhc
Confidence 999999999998654 3344 78899999999999888443 33 35788999999999987665543336678
Q ss_pred ccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 559 SQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 559 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
++|++|++++|... . ....+. ++|+.|+++.+.....+. +..+++|+.|++.++.
T Consensus 253 ~~L~~L~Ls~N~l~-~----------ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 253 SQLNSLNLSFTGLK-Q----------VPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTCCEEECTTSCCS-S----------CCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCT
T ss_pred CCCCEEECCCCccC-h----------hhhhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCC
Confidence 89999999887432 1 112222 688899999888776643 5667788887776553
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.5e-13 Score=141.09 Aligned_cols=147 Identities=22% Similarity=0.364 Sum_probs=127.1
Q ss_pred ccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCC
Q 002037 422 CEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTH 500 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 500 (977)
.+.++.+++.+..+|... .++|+.|++++|.+..+++..|.++++|++|++++|.+..+|. .+..+++|++|+|++|.
T Consensus 21 ~~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 456777778888887633 4899999999999999888888999999999999999999986 46899999999999999
Q ss_pred CCC--CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 501 LND--ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 501 l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
+.. +..+..+++|++|++++|++..+|..+..+++|++|++++|.+ ..+|...+..+++|++|++.++.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCC
Confidence 988 3457899999999999999999999999999999999999975 45666668889999999998763
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.51 E-value=1.1e-13 Score=140.10 Aligned_cols=145 Identities=23% Similarity=0.408 Sum_probs=116.5
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~l 501 (977)
+.+...++.+..+|.. -.++|+.|++++|.+..++...|..+++|++|++++|.+..+|.. +..+++|++|++++|.+
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3455566666666643 346889999999998888888888899999999999998888774 57889999999999988
Q ss_pred CC-C-ccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 502 ND-A-SLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 502 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+. .+|...+..+++|++|+++++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCC
Confidence 87 3 4478899999999999999888776 688899999999998754 566655788899999998876
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=4.4e-14 Score=148.25 Aligned_cols=170 Identities=23% Similarity=0.253 Sum_probs=122.2
Q ss_pred ccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCC
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 498 (977)
+.++..+.+..+.+..++....+++|+.|++++|.+..++ .+..+++|++|++++|.+..+++ +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 4555566666677666665566778888888888877776 36778888888888888887776 77888888888888
Q ss_pred CCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 499 THLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 499 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
|.+...+.+.. ++|++|++++|.++.+| .++.+++|++|++++|.+. .++ . ++.+++|++|++++|...
T Consensus 95 N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~-~~~-~-l~~l~~L~~L~L~~N~i~------ 163 (263)
T 1xeu_A 95 NRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK-SIV-M-LGFLSKLEVLDLHGNEIT------ 163 (263)
T ss_dssp SCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC-BCG-G-GGGCTTCCEEECTTSCCC------
T ss_pred CccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC-CCh-H-HccCCCCCEEECCCCcCc------
Confidence 88777444444 78888888888888775 4788888888888888744 344 3 778888888888776321
Q ss_pred ccCcCccccccccCCCCcEEEeeecCcccc
Q 002037 579 ANGQNARFSEVASLTRLTVLYIHVSNTKVL 608 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 608 (977)
....+..+++|+.|+++.+.....
T Consensus 164 ------~~~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 ------NTGGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ------BCTTSTTCCCCCEEEEEEEEEECC
T ss_pred ------chHHhccCCCCCEEeCCCCcccCC
Confidence 114566777788888877665433
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.49 E-value=9.7e-14 Score=138.94 Aligned_cols=147 Identities=18% Similarity=0.248 Sum_probs=108.6
Q ss_pred ccccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCC-CCCCcccCCCCCeEe
Q 002037 417 EDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISS-LAPSLPCLEKLRSLH 495 (977)
Q Consensus 417 ~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~L~ 495 (977)
..+.+++.++++++.+..++....+++|++|++++|.+..++ .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 346778888888888877776667788888888888665553 36677888888888887774 566777788888888
Q ss_pred cCCCCCCC--CccccCCCCccEEEccCCC-CcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 496 LENTHLND--ASLIREFGELEVLILKGSR-IVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 496 L~~~~l~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
+++|.+.. +..++.+++|++|++++|. +..+| .+..+++|++|++++|.+. .++ . +..+++|++|+++++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~-~~~-~-l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVH-DYR-G-IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCC-CCT-T-GGGCSSCCEEEECBC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCc-ChH-H-hccCCCCCEEEeeCc
Confidence 88887776 6677777888888888876 77776 5777778888888877643 344 3 677777777777665
No 101
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=2.6e-13 Score=149.36 Aligned_cols=120 Identities=16% Similarity=0.253 Sum_probs=67.2
Q ss_pred cEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC---CccccCCCCccE-EEcc
Q 002037 445 TTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND---ASLIREFGELEV-LILK 519 (977)
Q Consensus 445 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~-L~l~ 519 (977)
++++.+++.++.+|..+ .++++.|+|++|.++.+|+ .+.++++|++|+|++|.+.. +..+.++++|+. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34455555555555433 2456666666666666665 45666666666666666543 234556666543 4444
Q ss_pred CCCCcccC-ccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccC
Q 002037 520 GSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGN 568 (977)
Q Consensus 520 ~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~ 568 (977)
+|++..+| ..+..+++|++|++++|.+ ..+|...+....++..|++.+
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~ 137 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQD 137 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEES
T ss_pred CCcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhcc
Confidence 56666664 3356677777777776653 334433233444555555543
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=4.9e-14 Score=165.14 Aligned_cols=189 Identities=21% Similarity=0.319 Sum_probs=155.6
Q ss_pred ccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCC
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLEN 498 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~ 498 (977)
+..+..+.+..+.+..+.....+++|+.|++++|.+..++. +..+++|+.|+|++|.+..+++ +..+++|++|+|++
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 33444455555555555555678899999999999988864 7899999999999999999887 99999999999999
Q ss_pred CCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccc
Q 002037 499 THLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEET 578 (977)
Q Consensus 499 ~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~ 578 (977)
|.+..++.+..+++|++|+|++|.+..+| .+..+++|+.|+|++|.+.. + .. ++.+++|+.|++++|...
T Consensus 97 N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~-l~~l~~L~~L~Ls~N~l~------ 166 (605)
T 1m9s_A 97 NKIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITD-I-TV-LSRLTKLDTLSLEDNQIS------ 166 (605)
T ss_dssp SCCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCC-C-GG-GGSCTTCSEEECCSSCCC------
T ss_pred CCCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCC-c-hh-hcccCCCCEEECcCCcCC------
Confidence 99999888999999999999999999875 49999999999999998554 4 33 899999999999987421
Q ss_pred ccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 579 ANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 579 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
.+..+..+++|+.|+|+.+....++ .+..+++|+.|++..+.
T Consensus 167 ------~~~~l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 167 ------DIVPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp ------CCGGGTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEE
T ss_pred ------CchhhccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCc
Confidence 1122788999999999998877653 35678999999987764
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=3e-13 Score=137.80 Aligned_cols=145 Identities=24% Similarity=0.385 Sum_probs=109.6
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~l 501 (977)
+.++..++.+..+|... .++++.|++++|.+..++...|..+++|++|++++|.+..+ |..+..+++|++|+|++|.+
T Consensus 14 ~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp TEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 35666677777776532 26788888888888887777778888888888888888876 55788888888888888888
Q ss_pred CC-C-ccccCCCCccEEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 502 ND-A-SLIREFGELEVLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 502 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
.. + ..+..+++|++|+|++|.+..++ ..+..+++|++|++++|.+. .++.+.+..+++|++|+++++
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSS
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCC
Confidence 77 3 34677888888888888888774 45778888888888888744 455544777888888887765
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=5.2e-14 Score=154.44 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=106.2
Q ss_pred ccEEEccCCCCCCCChhHHhcC--CCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC---CccccCCCCccEEEc
Q 002037 444 LTTLFLQNNPFADIPNAFFEHT--REIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND---ASLIREFGELEVLIL 518 (977)
Q Consensus 444 L~~L~l~~~~~~~~~~~~~~~l--~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~---~~~i~~l~~L~~L~l 518 (977)
++.++++++.+. +..+..+ ..+++|+++++.+...++.+..+++|++|++++|.+.. +..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 455666665544 4556666 88999999999988888878889999999999998764 466788899999999
Q ss_pred cCCCCc-ccCccccCCCCCCEEEcCCCC-CCC-ccChhhhhcCccccEEEccCC-cCCccccccccCcCccccccccCC-
Q 002037 519 KGSRIV-ELPNGIGTVSNLKLLDLSNNL-FLQ-VIPPNVISKLSQLEELYVGNS-FGDWEVEETANGQNARFSEVASLT- 593 (977)
Q Consensus 519 ~~~~l~-~lp~~i~~l~~L~~L~l~~~~-~~~-~~p~~~i~~L~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~l~~l~- 593 (977)
++|.+. ..|..++.+++|++|++++|. +.. .++.. +..+++|++|++++| .... ......+..++
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~---------~~~~~~~~~l~~ 195 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTE---------KHVQVAVAHVSE 195 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCH---------HHHHHHHHHSCT
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcCh---------HHHHHHHHhccc
Confidence 999877 567778889999999999984 333 24433 778889999988876 2210 00123355566
Q ss_pred CCcEEEeeec
Q 002037 594 RLTVLYIHVS 603 (977)
Q Consensus 594 ~L~~L~l~~~ 603 (977)
+|+.|+++.+
T Consensus 196 ~L~~L~l~~~ 205 (336)
T 2ast_B 196 TITQLNLSGY 205 (336)
T ss_dssp TCCEEECCSC
T ss_pred CCCEEEeCCC
Confidence 7777776654
No 105
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.47 E-value=1.3e-13 Score=149.08 Aligned_cols=193 Identities=18% Similarity=0.161 Sum_probs=139.6
Q ss_pred cCccEEEeccCCCccC-CCC---CCCCCccEEEccCCCCCCCCh----hHHhcCCCccEEEccCCcCCCCCC-CcccCCC
Q 002037 420 QNCEKLSLMDGNVTAL-PDQ---PKCPRLTTLFLQNNPFADIPN----AFFEHTREIKNLDLSSTNISSLAP-SLPCLEK 490 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l-~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~ 490 (977)
.+++.|++++|.+... |.. ..+++|++|++++|.+..... ..+..+++|++|++++|.+..+++ .++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4588888888887643 322 568889999999988775322 334568889999999998887764 7788899
Q ss_pred CCeEecCCCCCCC------CccccCCCCccEEEccCCCCcccCcc----ccCCCCCCEEEcCCCCCCCccChhhhhcC--
Q 002037 491 LRSLHLENTHLND------ASLIREFGELEVLILKGSRIVELPNG----IGTVSNLKLLDLSNNLFLQVIPPNVISKL-- 558 (977)
Q Consensus 491 L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~~~~~p~~~i~~L-- 558 (977)
|++|++++|.+.. ...++.+++|++|++++|+++.+|.. ++.+++|++|++++|.+....|.. ++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhccC
Confidence 9999999988653 23346788899999999988766653 467888999999998876666765 5665
Q ss_pred -ccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 559 -SQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 559 -~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
++|++|++++|... .+ ...+ .++|+.|+++.|.....+. ...+++|+.|++.+|.
T Consensus 250 ~~~L~~L~Ls~N~l~-~l----------p~~~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 250 SSALNSLNLSFAGLE-QV----------PKGL--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTCCCEECCSSCCC-SC----------CSCC--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTT
T ss_pred cCcCCEEECCCCCCC-ch----------hhhh--cCCCCEEECCCCcCCCCch--hhhCCCccEEECcCCC
Confidence 68899998887432 11 1122 2688888888887766543 4567888888776654
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.47 E-value=3.6e-13 Score=137.12 Aligned_cols=145 Identities=18% Similarity=0.354 Sum_probs=116.9
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCC-hhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIP-NAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTH 500 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 500 (977)
+.++++++.+..+|.. -.+.++.|++++|.+..++ ...|..+++|++|++++|.+..+++ .+..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 4678888888887753 2456788999999888773 4567889999999999999888876 78889999999999998
Q ss_pred CCC--CccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 501 LND--ASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 501 l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
+.. +..+..+++|++|++++|.+..+ |..+..+++|++|++++|.+....|.. +..+++|++|+++++
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCc
Confidence 887 34588899999999999998877 566888999999999998865544544 888888888888776
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.46 E-value=2.8e-13 Score=135.54 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=103.1
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccEEE
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLI 517 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~ 517 (977)
.+++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4567778888887777666 2567778888888887665543 66777788888888877765 67777778888888
Q ss_pred ccCCCCcc-cCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCc
Q 002037 518 LKGSRIVE-LPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLT 596 (977)
Q Consensus 518 l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 596 (977)
+++|.+.. .|..++.+++|++|++++|.....+| . +..+++|++|++++|... .+..+..+++|+
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~-l~~l~~L~~L~l~~n~i~------------~~~~l~~l~~L~ 184 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P-LKTLPELKSLNIQFDGVH------------DYRGIEDFPKLN 184 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G-GGGCSSCCEEECTTBCCC------------CCTTGGGCSSCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h-hcCCCCCCEEECCCCCCc------------ChHHhccCCCCC
Confidence 88877774 55667777888888888776445555 3 677778888877765321 122556667777
Q ss_pred EEEeeecC
Q 002037 597 VLYIHVSN 604 (977)
Q Consensus 597 ~L~l~~~~ 604 (977)
.|+++.+.
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 77776654
No 108
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.45 E-value=2.1e-14 Score=157.60 Aligned_cols=174 Identities=18% Similarity=0.200 Sum_probs=96.8
Q ss_pred cCccEEEeccCCCccC-CCCCCCCCccEEEccCCCCCCC-ChhHHhcCCCccEEEccCCcCC-CCCCCcccCCCCCeEec
Q 002037 420 QNCEKLSLMDGNVTAL-PDQPKCPRLTTLFLQNNPFADI-PNAFFEHTREIKNLDLSSTNIS-SLAPSLPCLEKLRSLHL 496 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~~~-~lp~~~~~l~~L~~L~L 496 (977)
.+++.+.+.++.+... +....+++|+.|++++|.+... ....+..+++|++|++++|.+. ..|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 3455666666655443 2234566666777766665432 3344566666666666666655 33445556666666666
Q ss_pred CCC-CCCC---CccccCCCCccEEEccCC-CCcc--cCccccCCC-CCCEEEcCCCC--CC-CccChhhhhcCccccEEE
Q 002037 497 ENT-HLND---ASLIREFGELEVLILKGS-RIVE--LPNGIGTVS-NLKLLDLSNNL--FL-QVIPPNVISKLSQLEELY 565 (977)
Q Consensus 497 ~~~-~l~~---~~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~--~~-~~~p~~~i~~L~~L~~L~ 565 (977)
++| .+.+ +..+..+++|++|++++| .++. +|..+..++ +|++|++++|. +. ..+|.. +..+++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~-~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL-VRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH-HHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH-HhhCCCCCEEe
Confidence 666 4543 334556666666666666 6653 455566666 66666666662 22 223332 55666666666
Q ss_pred ccCCcCCccccccccCcCccccccccCCCCcEEEeeec
Q 002037 566 VGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVS 603 (977)
Q Consensus 566 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 603 (977)
+++|... ....+..+..+++|+.|+++.+
T Consensus 229 l~~~~~l---------~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 229 LSDSVML---------KNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp CTTCTTC---------CGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCCcC---------CHHHHHHHhCCCCCCEeeCCCC
Confidence 6665310 1122234455566666666544
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.44 E-value=5e-13 Score=140.17 Aligned_cols=145 Identities=19% Similarity=0.343 Sum_probs=130.9
Q ss_pred cccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecC
Q 002037 418 DLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLE 497 (977)
Q Consensus 418 ~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~ 497 (977)
.+.+++.|++.+|.+..++....+++|+.|++++|.+..++. +.++++|++|++++|.+..+|.... .+|++|+++
T Consensus 39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 378899999999999999877889999999999999999887 7899999999999999999876444 999999999
Q ss_pred CCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 498 NTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 498 ~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
+|.+..++.++.+++|++|++++|+++.+| .++.+++|++|++++|.+... .. +..+++|++|+++++.
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT--GG-LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC--TT-STTCCCCCEEEEEEEE
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch--HH-hccCCCCCEEeCCCCc
Confidence 999999778999999999999999999997 699999999999999986554 33 8899999999998863
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=2.3e-13 Score=147.09 Aligned_cols=136 Identities=18% Similarity=0.134 Sum_probs=78.5
Q ss_pred CCCccEEEccCCcCCC-CCCCc--ccCCCCCeEecCCCCCCC--C----ccccCCCCccEEEccCCCCcccC-ccccCCC
Q 002037 465 TREIKNLDLSSTNISS-LAPSL--PCLEKLRSLHLENTHLND--A----SLIREFGELEVLILKGSRIVELP-NGIGTVS 534 (977)
Q Consensus 465 l~~Lr~L~l~~~~~~~-lp~~~--~~l~~L~~L~L~~~~l~~--~----~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~ 534 (977)
+.+|++|++++|.+.. .|..+ ..+++|++|++++|.+.. + ..+..+++|++|++++|.+..+| ..++.++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777777663 34444 667777777777776654 1 23345677777777777776555 4466777
Q ss_pred CCCEEEcCCCCCCCc--cC-hhhhhcCccccEEEccCCcCCccccccccCcCcccc-ccccCCCCcEEEeeecCcccc
Q 002037 535 NLKLLDLSNNLFLQV--IP-PNVISKLSQLEELYVGNSFGDWEVEETANGQNARFS-EVASLTRLTVLYIHVSNTKVL 608 (977)
Q Consensus 535 ~L~~L~l~~~~~~~~--~p-~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~ 608 (977)
+|++|++++|.+... ++ ...++.+++|++|++++|..... ..... -++.+++|+.|+++.+.....
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l--------~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP--------TGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH--------HHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch--------HHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 777777777764321 11 11135667777777766532100 00001 134566777777776665554
No 111
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=7.5e-13 Score=145.61 Aligned_cols=141 Identities=18% Similarity=0.254 Sum_probs=66.7
Q ss_pred ccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCC-CCC-CcccCCCCCe-EecCCCCCCC-
Q 002037 428 MDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISS-LAP-SLPCLEKLRS-LHLENTHLND- 503 (977)
Q Consensus 428 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~-~~~~l~~L~~-L~L~~~~l~~- 503 (977)
++++++.+|... .++++.|++++|.++.++...|.++++|++|++++|.+.+ +|. .+.++++|++ +.+.+|.+..
T Consensus 17 ~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l 95 (350)
T 4ay9_X 17 QESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI 95 (350)
T ss_dssp ESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE
T ss_pred cCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc
Confidence 334444444321 2345555555555555555555555555555555555432 332 3445555443 3333444444
Q ss_pred -CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCc-cccEEEccCC
Q 002037 504 -ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLS-QLEELYVGNS 569 (977)
Q Consensus 504 -~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~-~L~~L~l~~~ 569 (977)
+..+..+++|++|++++|++..+|.. .....++.+|++.++..+..+|...+..+. .+++|+++++
T Consensus 96 ~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS
T ss_pred CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc
Confidence 34445555555555555555555432 233344455555444334444443333332 3455555544
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=9.8e-13 Score=145.29 Aligned_cols=145 Identities=24% Similarity=0.343 Sum_probs=90.3
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHh-cCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFE-HTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTH 500 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~ 500 (977)
+.++.+++.+..+|.. -.+.++.|++++|.+..++...|. ++.+|++|++++|.+..+++ .+..+++|++|+|++|.
T Consensus 21 ~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSSCCSSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 3455566666666542 123466677777766666665555 66677777777777666654 46667777777777776
Q ss_pred CCC--CccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCCccChhhh---hcCccccEEEccCC
Q 002037 501 LND--ASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQVIPPNVI---SKLSQLEELYVGNS 569 (977)
Q Consensus 501 l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~i---~~L~~L~~L~l~~~ 569 (977)
+.. +..+..+++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|...+ ..+++|++|+++++
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N 173 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN 173 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC
Confidence 665 33466667777777777766665 3446667777777777765 344555533 45667777777665
No 113
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.38 E-value=6.3e-12 Score=126.98 Aligned_cols=151 Identities=21% Similarity=0.355 Sum_probs=128.5
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-ccc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPC 487 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~ 487 (977)
...+|.....+++.|++.+|.+..++. +..+++|++|++++|.+..++...|..+++|++|++++|.+..+|+. +..
T Consensus 19 l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 98 (208)
T 2o6s_A 19 RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK 98 (208)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence 334444446789999999999988776 46899999999999999999988889999999999999999998874 689
Q ss_pred CCCCCeEecCCCCCCC-C-ccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEE
Q 002037 488 LEKLRSLHLENTHLND-A-SLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEEL 564 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L 564 (977)
+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+. +.+++|+.|
T Consensus 99 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L 170 (208)
T 2o6s_A 99 LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYL 170 (208)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHH
T ss_pred ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHH
Confidence 9999999999999988 3 4578999999999999999998876 789999999999999644 345567777
Q ss_pred EccCC
Q 002037 565 YVGNS 569 (977)
Q Consensus 565 ~l~~~ 569 (977)
+++.+
T Consensus 171 ~~~~n 175 (208)
T 2o6s_A 171 SEWIN 175 (208)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=5e-12 Score=146.29 Aligned_cols=181 Identities=20% Similarity=0.274 Sum_probs=129.4
Q ss_pred CccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCC
Q 002037 421 NCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~ 500 (977)
+++.|++++|.+..+|... .++|+.|++++|.+..+| ..+++|++|++++|.++.+|. +.. +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 6778888888887777633 478888888888888777 346888888888888888887 655 88888888888
Q ss_pred CCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcccccccc
Q 002037 501 LNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETAN 580 (977)
Q Consensus 501 l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~ 580 (977)
+...+. .+++|++|++++|.++.+|. .+++|++|++++|.+. .+|. +. ++|++|++++|... .++.
T Consensus 132 l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~-~lp~--- 197 (571)
T 3cvr_A 132 LTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLE-SLPA--- 197 (571)
T ss_dssp CSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCS-SCCC---
T ss_pred CCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCC-chhh---
Confidence 877333 67888888888888888887 5778888888888744 4776 44 78888888877432 1110
Q ss_pred CcCcccccc-ccCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecC
Q 002037 581 GQNARFSEV-ASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVND 628 (977)
Q Consensus 581 ~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 628 (977)
....+ .....|+.|+++.|....++..+.. +++|+.|++..|.
T Consensus 198 ----~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 198 ----VPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNP 241 (571)
T ss_dssp ----CC--------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSS
T ss_pred ----HHHhhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCc
Confidence 00011 1112338888888887777665554 8888888877664
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=5.9e-12 Score=129.05 Aligned_cols=140 Identities=22% Similarity=0.318 Sum_probs=123.7
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-ccc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPC 487 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~ 487 (977)
...+|.....+++.|++++|.+..++. +..+++|+.|++++|.+..++...|..+++|++|++++|.+..+|+. +..
T Consensus 31 l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 31 HASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCc
Confidence 445555446789999999999988744 46899999999999999999988899999999999999999999874 689
Q ss_pred CCCCCeEecCCCCCCC-CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCcc
Q 002037 488 LEKLRSLHLENTHLND-ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVI 550 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~ 550 (977)
+++|++|++++|.+.. |..+..+++|++|++++|.+..+|.. +..+++|++|++++|.+....
T Consensus 111 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 111 LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred chhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999999999999998 78899999999999999999999864 889999999999999865443
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=3.7e-12 Score=129.60 Aligned_cols=138 Identities=19% Similarity=0.332 Sum_probs=121.7
Q ss_pred cCCCCCcccccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cc
Q 002037 410 MKKGWPREDLQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LP 486 (977)
Q Consensus 410 ~~~~~~~~~~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~ 486 (977)
....+|..-..+++.|++.+|.+..++. +..+++|+.|++++|.+..+.+..|.++++|++|++++|.+..+|+. +.
T Consensus 22 ~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~ 101 (220)
T 2v9t_B 22 GLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFE 101 (220)
T ss_dssp CCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred CcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHcc
Confidence 3444554445689999999999988774 57899999999999999998888899999999999999999999885 68
Q ss_pred cCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCC
Q 002037 487 CLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFL 547 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 547 (977)
.+++|++|+|++|.+.. +..+..+++|++|+|++|.++.+|.. +..+++|++|++++|.+.
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 89999999999999988 57899999999999999999999865 889999999999999753
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.37 E-value=6.7e-14 Score=156.60 Aligned_cols=129 Identities=11% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCCccEEEccCCCCCCCChh----HHhcCCCccEEEccCCcCCCC----CCCc-------ccCCCCCeEecCCCCCCC--
Q 002037 441 CPRLTTLFLQNNPFADIPNA----FFEHTREIKNLDLSSTNISSL----APSL-------PCLEKLRSLHLENTHLND-- 503 (977)
Q Consensus 441 ~~~L~~L~l~~~~~~~~~~~----~~~~l~~Lr~L~l~~~~~~~l----p~~~-------~~l~~L~~L~L~~~~l~~-- 503 (977)
+++|+.|++++|.+...... .+..+++|++|++++|.+..+ |..+ ..+++|++|+|++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 34455555555544332111 133455555555555433322 2222 344555555555555443
Q ss_pred ----CccccCCCCccEEEccCCCCc-----ccCccccCC---------CCCCEEEcCCCCCC-CccCh--hhhhcCcccc
Q 002037 504 ----ASLIREFGELEVLILKGSRIV-----ELPNGIGTV---------SNLKLLDLSNNLFL-QVIPP--NVISKLSQLE 562 (977)
Q Consensus 504 ----~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l---------~~L~~L~l~~~~~~-~~~p~--~~i~~L~~L~ 562 (977)
+..+..+++|++|+|++|.+. .++..+..+ ++|++|++++|.+. ..+|. ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 223445555555555555543 122222222 55555555555433 12221 1134455555
Q ss_pred EEEccCC
Q 002037 563 ELYVGNS 569 (977)
Q Consensus 563 ~L~l~~~ 569 (977)
+|++++|
T Consensus 191 ~L~L~~n 197 (386)
T 2ca6_A 191 TVKMVQN 197 (386)
T ss_dssp EEECCSS
T ss_pred EEECcCC
Confidence 5555554
No 118
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=2.2e-12 Score=142.48 Aligned_cols=148 Identities=28% Similarity=0.423 Sum_probs=75.4
Q ss_pred cCccEEEeccCCCccCCCC--C-CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEe
Q 002037 420 QNCEKLSLMDGNVTALPDQ--P-KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLH 495 (977)
Q Consensus 420 ~~~~~l~l~~~~~~~l~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 495 (977)
..++.|++++|.+..++.. . .+++|+.|++++|.+..++...|.++++|++|+|++|.+..+++ .+..+.+|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 3455555555555544432 2 45555555555555555554445555555555555555555544 345555555555
Q ss_pred cCCCCCCC--CccccCCCCccEEEccCCCCcccCccc----cCCCCCCEEEcCCCCCCCccChhhhhcCcc--ccEEEcc
Q 002037 496 LENTHLND--ASLIREFGELEVLILKGSRIVELPNGI----GTVSNLKLLDLSNNLFLQVIPPNVISKLSQ--LEELYVG 567 (977)
Q Consensus 496 L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~--L~~L~l~ 567 (977)
|++|.+.. +..+..+++|++|+|++|.++.+|..+ ..+++|++|++++|.+ ..+|...+..++. |+.|++.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC-CCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC-CccCHHHhhhccHhhcceEEec
Confidence 55555544 344555555555555555555555443 3455555555555542 3344433444444 2444444
Q ss_pred C
Q 002037 568 N 568 (977)
Q Consensus 568 ~ 568 (977)
+
T Consensus 198 ~ 198 (361)
T 2xot_A 198 N 198 (361)
T ss_dssp S
T ss_pred C
Confidence 4
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.35 E-value=3.7e-12 Score=129.66 Aligned_cols=139 Identities=23% Similarity=0.322 Sum_probs=121.8
Q ss_pred CCCCCcccccCccEEEeccCCCccCCC---CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-Ccc
Q 002037 411 KKGWPREDLQNCEKLSLMDGNVTALPD---QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLP 486 (977)
Q Consensus 411 ~~~~~~~~~~~~~~l~l~~~~~~~l~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~ 486 (977)
...+|..-...++.|++++|.+..++. +..+++|+.|++++|.+..++...|.++++|++|++++|.+..+++ .+.
T Consensus 23 l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 102 (220)
T 2v70_A 23 LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK 102 (220)
T ss_dssp CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence 344554445677899999999988743 4689999999999999999988889999999999999999999887 589
Q ss_pred cCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCCCCc
Q 002037 487 CLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLFLQV 549 (977)
Q Consensus 487 ~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~~~~ 549 (977)
.+++|++|+|++|.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+...
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99999999999999988 67899999999999999999988 67799999999999999976544
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=3.4e-13 Score=149.19 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=63.3
Q ss_pred CccEEEccCCCCCCCCh----hHHhcCC-CccEEEccCCcCCCCC-CCcccC-----CCCCeEecCCCCCCC--Ccc---
Q 002037 443 RLTTLFLQNNPFADIPN----AFFEHTR-EIKNLDLSSTNISSLA-PSLPCL-----EKLRSLHLENTHLND--ASL--- 506 (977)
Q Consensus 443 ~L~~L~l~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~~~~lp-~~~~~l-----~~L~~L~L~~~~l~~--~~~--- 506 (977)
+|+.|++++|.+...+. ..+.+++ +|++|++++|.+.... ..+..+ ++|++|+|++|.+.. +..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 36666666666655554 4455555 5666666666555432 233332 566666666666544 121
Q ss_pred -ccCC-CCccEEEccCCCCcccCcc-----ccC-CCCCCEEEcCCCCCCCc----cChhhhhcCc-cccEEEccCC
Q 002037 507 -IREF-GELEVLILKGSRIVELPNG-----IGT-VSNLKLLDLSNNLFLQV----IPPNVISKLS-QLEELYVGNS 569 (977)
Q Consensus 507 -i~~l-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~l~~~~~~~~----~p~~~i~~L~-~L~~L~l~~~ 569 (977)
+..+ ++|++|++++|.+...+.. +.. .++|++|++++|.+... ++.. +..++ +|++|++++|
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-LAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-HHTSCTTCCEEECTTS
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-HhcCCccccEeeecCC
Confidence 2333 5566666666655544321 222 24566666666653321 1111 23333 5666655554
No 121
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.32 E-value=2.3e-11 Score=140.75 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=133.2
Q ss_pred CCCCcccccCccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCC
Q 002037 412 KGWPREDLQNCEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKL 491 (977)
Q Consensus 412 ~~~~~~~~~~~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L 491 (977)
..+|..-.++++.|++++|.+..+| ..+++|+.|++++|.+..++. +.+ +|++|++++|.++.+|. .+++|
T Consensus 72 ~~lp~~l~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L 142 (571)
T 3cvr_A 72 SSLPDNLPPQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALL 142 (571)
T ss_dssp SCCCSCCCTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTC
T ss_pred CccCHhHcCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccc
Confidence 3344433578999999999999888 568999999999999998877 443 99999999999999888 68999
Q ss_pred CeEecCCCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccc-------cEE
Q 002037 492 RSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQL-------EEL 564 (977)
Q Consensus 492 ~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L-------~~L 564 (977)
++|++++|.++..+. .+++|++|++++|.++.+|. +. ++|++|++++|.+ ..+|. +.. +| ++|
T Consensus 143 ~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L-~~lp~--~~~--~L~~~~~~L~~L 212 (571)
T 3cvr_A 143 EYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL-ESLPA--VPV--RNHHSEETEIFF 212 (571)
T ss_dssp CEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC-SSCCC--CC----------CCEEE
T ss_pred cEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC-Cchhh--HHH--hhhcccccceEE
Confidence 999999999988333 67899999999999999998 66 8999999999975 46776 333 66 999
Q ss_pred EccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccc
Q 002037 565 YVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKV 607 (977)
Q Consensus 565 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 607 (977)
++++|... .....+..+++|+.|+++.|....
T Consensus 213 ~Ls~N~l~-----------~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 213 RCRENRIT-----------HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp ECCSSCCC-----------CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred ecCCCcce-----------ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99887432 223456778999999999887644
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.31 E-value=4.3e-11 Score=133.69 Aligned_cols=279 Identities=13% Similarity=0.008 Sum_probs=169.5
Q ss_pred cccchHHHHHHHHHHhhc--CCCceeEEEEEcCCCChHHHHHHHHHhh-cCC--------CCEEEEEEeCCCC-CHHHHH
Q 002037 72 PLKSALEVIKSVMKLLKD--NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIP--------FDKVIFVRVTQTP-DVKRVQ 139 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~--------f~~~~wv~~~~~~-~~~~~~ 139 (977)
.++||+++++++..++.. .....+.+.|+|++|+||||+|+.+++. ... ...++|+++.... +...++
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 100 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVL 100 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHH
Confidence 578999999999877754 1223568999999999999999999987 221 3467888877666 788888
Q ss_pred HHHHHHhhhc-c--ccchHHHHHHHHHHHHHccceEEEEecCcccccc---ccccccCCCCCCCCeEEEEecCChHH---
Q 002037 140 DEIARFLNTE-L--EGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD---LAVVGIPYGEEHKGCKIILTSRFKEV--- 210 (977)
Q Consensus 140 ~~i~~~l~~~-~--~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---~~~l~~~~~~~~~gs~iivTtR~~~v--- 210 (977)
..++..+... . .+.........+.+.+.. ++.+|||||++.... .+.+...+.....+..||+||+....
T Consensus 101 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~~~~~ 179 (384)
T 2qby_B 101 SSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDY 179 (384)
T ss_dssp HHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTTTTTT
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCchHhh
Confidence 8888877321 1 112223344555566653 344999999986522 12201111111167889999987532
Q ss_pred -----HhhccCCceEEccCCCHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHhC---CChh-HHHHHHHHh--c----C
Q 002037 211 -----CDEMESTNYVQVEELTDEDRLILFKKKAGL-PEGTKAFDRAAEEVVRQCG---KLPN-AIVIIGTAL--R----H 274 (977)
Q Consensus 211 -----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPL-ai~~~~~~l--~----~ 274 (977)
..... ..+++++++.++..+++..++.. .....-.++..+.+++.++ |.|. |+..+.... + .
T Consensus 180 l~~~l~sr~~--~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~ 257 (384)
T 2qby_B 180 MEPRVLSSLG--PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGI 257 (384)
T ss_dssp SCHHHHHTCC--CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSC
T ss_pred hCHHHHhcCC--CeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCc
Confidence 12212 38999999999999999987531 1111222456778888888 8876 444433332 2 2
Q ss_pred CChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHhhhcCCCCCCCcChHHHHH--HHhhhccccccc
Q 002037 275 KPVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSCLFPPYYSVSMEEFVI--HGLVDRLFPQVG 352 (977)
Q Consensus 275 ~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~fp~~~~i~~~~li~--~w~a~g~~~~~~ 352 (977)
.+.+.+..+++... ...+..++..|+++.+..+..++....+ .++.. .-+++.+=...
T Consensus 258 i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~~~~~l~al~~~~~~-----~~~~~~~~~~~~~~g~~~- 317 (384)
T 2qby_B 258 IRKEHVDKAIVDYE--------------QERLIEAVKALPFHYKLALRSLIESEDV-----MSAHKMYTDLCNKFKQKP- 317 (384)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHHHSSCHHHHHHHHHHHTCCBH-----HHHHHHHHHHHHHTTCCC-
T ss_pred cCHHHHHHHHHHHh--------------cchHHHHHHcCCHHHHHHHHHHHHhccc-----ChHHHHHHHHHHHcCCCC-
Confidence 25666776665432 2345667788998888777666651110 12210 11121110000
Q ss_pred chhhhhhcHHHHHHHHHhcccccC
Q 002037 353 LLGEVGNRVHPVVLRLISSSLLLE 376 (977)
Q Consensus 353 ~~~~~~~~~~~~l~~L~~~~li~~ 376 (977)
-....+.+++..|...+++..
T Consensus 318 ---~~~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 318 ---LSYRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp ---CCHHHHHHHHHHHHHTTSEEE
T ss_pred ---CCHHHHHHHHHHHHhCCCEEE
Confidence 112345567899999999964
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=5.3e-13 Score=149.25 Aligned_cols=181 Identities=14% Similarity=0.140 Sum_probs=134.0
Q ss_pred ccCccEEEeccCCCccC-----C-CCCCCCCccEEEccCCCCCCC----ChhH------HhcCCCccEEEccCCcCCC--
Q 002037 419 LQNCEKLSLMDGNVTAL-----P-DQPKCPRLTTLFLQNNPFADI----PNAF------FEHTREIKNLDLSSTNISS-- 480 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l-----~-~~~~~~~L~~L~l~~~~~~~~----~~~~------~~~l~~Lr~L~l~~~~~~~-- 480 (977)
.++++.|++++|.+... + .+..+++|++|++++|.+..+ |..+ +..+++|++|++++|.+..
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 46789999999887642 1 245789999999999876543 2222 4688999999999999886
Q ss_pred ---CCCCcccCCCCCeEecCCCCCCC--Ccc----ccCC---------CCccEEEccCCCCc--ccC---ccccCCCCCC
Q 002037 481 ---LAPSLPCLEKLRSLHLENTHLND--ASL----IREF---------GELEVLILKGSRIV--ELP---NGIGTVSNLK 537 (977)
Q Consensus 481 ---lp~~~~~l~~L~~L~L~~~~l~~--~~~----i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~ 537 (977)
+|..+..+++|++|+|++|.+.. +.. +..+ ++|++|++++|.+. .+| ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 67788899999999999999864 223 3344 89999999999986 455 4677899999
Q ss_pred EEEcCCCCCCC-----ccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCcc
Q 002037 538 LLDLSNNLFLQ-----VIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTK 606 (977)
Q Consensus 538 ~L~l~~~~~~~-----~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 606 (977)
+|++++|.+.. .+|.. +..+++|++|++++|..... ........+..+++|+.|+++.+...
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~-l~~~~~L~~L~Ls~n~l~~~------g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEG-LAYCQELKVLDLQDNTFTHL------GSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTT-GGGCTTCCEEECCSSCCHHH------HHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred EEECcCCCCCHhHHHHHHHHH-hhcCCCccEEECcCCCCCcH------HHHHHHHHHccCCCcCEEECCCCCCc
Confidence 99999997542 22223 78899999999988743110 00122345677888999999877643
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.31 E-value=4.1e-12 Score=123.46 Aligned_cols=125 Identities=24% Similarity=0.279 Sum_probs=81.1
Q ss_pred CCccEEEccCCCCC--CCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccEEE
Q 002037 442 PRLTTLFLQNNPFA--DIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLI 517 (977)
Q Consensus 442 ~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~ 517 (977)
++|+.|++++|.+. .++.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666655 44432 46667777777777776666 666677777777777777665 34444577777777
Q ss_pred ccCCCCcccC--ccccCCCCCCEEEcCCCCCCCccCh---hhhhcCccccEEEccCC
Q 002037 518 LKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVIPP---NVISKLSQLEELYVGNS 569 (977)
Q Consensus 518 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~---~~i~~L~~L~~L~l~~~ 569 (977)
+++|.++.+| ..++.+++|++|++++|.+. .+|. ..+..+++|++|+++++
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEET
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCC
Confidence 7777777665 55677777777777777643 3443 33666777777766654
No 125
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=1.8e-12 Score=143.46 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=146.8
Q ss_pred ccCccEEEeccCCCccCCC------CCCCC-CccEEEccCCCCCCCChhHHhcC-----CCccEEEccCCcCCCCCCC--
Q 002037 419 LQNCEKLSLMDGNVTALPD------QPKCP-RLTTLFLQNNPFADIPNAFFEHT-----REIKNLDLSSTNISSLAPS-- 484 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~lp~~-- 484 (977)
..+++.|++++|.+...+. +..++ +|+.|++++|.+.......+..+ +.|++|++++|.+...+..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3459999999999887653 24677 89999999999988777666665 9999999999998866542
Q ss_pred ---cccC-CCCCeEecCCCCCCC--Ccc----ccC-CCCccEEEccCCCCc-----ccCccccCCC-CCCEEEcCCCCCC
Q 002037 485 ---LPCL-EKLRSLHLENTHLND--ASL----IRE-FGELEVLILKGSRIV-----ELPNGIGTVS-NLKLLDLSNNLFL 547 (977)
Q Consensus 485 ---~~~l-~~L~~L~L~~~~l~~--~~~----i~~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~~ 547 (977)
+..+ ++|++|++++|.+.. +.. +.. ..+|++|++++|.+. .++..+..++ +|++|++++|.+.
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 4455 899999999999876 222 334 369999999999988 5666667776 9999999999865
Q ss_pred CccChh---hhhcC-ccccEEEccCCcCCccccccccCcCcccccccc-CCCCcEEEeeecCcccccc----CCCCCCCC
Q 002037 548 QVIPPN---VISKL-SQLEELYVGNSFGDWEVEETANGQNARFSEVAS-LTRLTVLYIHVSNTKVLSV----DFDGPWTN 618 (977)
Q Consensus 548 ~~~p~~---~i~~L-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~----~~~~~~~~ 618 (977)
...+.. .+..+ ++|++|++++|..... ........+.. .++|+.|+++.+....... .....+++
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~------~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~ 254 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLK------SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGS------CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTT
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChh------HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCC
Confidence 544432 13445 5999999998742110 00112233444 3589999999887655433 33456677
Q ss_pred cceEEEEec
Q 002037 619 LKRFRVCVN 627 (977)
Q Consensus 619 L~~L~l~~~ 627 (977)
|+.|++..+
T Consensus 255 L~~L~L~~n 263 (362)
T 3goz_A 255 LQTVYLDYD 263 (362)
T ss_dssp CSEEEEEHH
T ss_pred ccEEEeccC
Confidence 888877655
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.30 E-value=3.9e-11 Score=134.27 Aligned_cols=289 Identities=15% Similarity=0.011 Sum_probs=174.0
Q ss_pred ccccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCC------CCEEEEEEeCCCCCHHHHHHH
Q 002037 71 VPLKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIP------FDKVIFVRVTQTPDVKRVQDE 141 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~------f~~~~wv~~~~~~~~~~~~~~ 141 (977)
..++||+++++++..++... ....+.+.|+|++|+||||+|+.+++. ... -...+|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 35889999999999988542 223668999999999999999999987 221 235678888888888899999
Q ss_pred HHHHhhhccc--cchHHHHHHHHHHHHH-ccceEEEEecCcccccc----ccccc---cCCCCC--CCCeEEEEecCChH
Q 002037 142 IARFLNTELE--GDVEVLRAAFLSERLK-RQKRVLIILDDLWGKLD----LAVVG---IPYGEE--HKGCKIILTSRFKE 209 (977)
Q Consensus 142 i~~~l~~~~~--~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~~----~~~l~---~~~~~~--~~gs~iivTtR~~~ 209 (977)
++..++.... +.........+.+.+. .+++.+|||||++.... .+.+. ...... ..+..+|.||+...
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~ 178 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLG 178 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCST
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCc
Confidence 9998865432 2223333455555553 35689999999986532 12221 111111 34556777777653
Q ss_pred H--------HhhccCCceEEccCCCHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHhC---CChh-HHHHHHHHhc---
Q 002037 210 V--------CDEMESTNYVQVEELTDEDRLILFKKKAGL-PEGTKAFDRAAEEVVRQCG---KLPN-AIVIIGTALR--- 273 (977)
Q Consensus 210 v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPL-ai~~~~~~l~--- 273 (977)
. ...+. ...+.+++++.++..+++.+.+.. .....-.+++.+.++++++ |.|- |+..+.....
T Consensus 179 ~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 179 FVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp TSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 2 22221 147899999999999999887531 0111222346778888888 9993 3333322221
Q ss_pred --C---CChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHhhhc-CCCCCCCcChHHHHHHHhhhcc
Q 002037 274 --H---KPVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSC-LFPPYYSVSMEEFVIHGLVDRL 347 (977)
Q Consensus 274 --~---~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~~-~fp~~~~i~~~~li~~w~a~g~ 347 (977)
+ .+.+.+..++.... ...+.-++..|+++.+..+...+ ++.+...+....+.+.....
T Consensus 258 ~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~-- 321 (387)
T 2v1u_A 258 RRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKEL-- 321 (387)
T ss_dssp HTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHH--
T ss_pred HcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH--
Confidence 1 14556666554432 22345567889988887766544 55433355555444432110
Q ss_pred cccccchhhhhhcHHHHHHHHHhcccccC
Q 002037 348 FPQVGLLGEVGNRVHPVVLRLISSSLLLE 376 (977)
Q Consensus 348 ~~~~~~~~~~~~~~~~~l~~L~~~~li~~ 376 (977)
....+...-....+..+++.|...|++..
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 322 TSTLGLEHVTLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhcCCCCCCHHHHHHHHHHHHhCCCeEE
Confidence 00000000012345568899999999964
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2e-12 Score=126.71 Aligned_cols=131 Identities=22% Similarity=0.274 Sum_probs=98.3
Q ss_pred CCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-Ccc-ccCCCCc
Q 002037 436 PDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASL-IREFGEL 513 (977)
Q Consensus 436 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~-i~~l~~L 513 (977)
+.+.++.+|+.|++++|.+..++. +....++|++|++++|.+..+ +.++.+++|++|++++|.+.. ++. ++.+++|
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 344567788888888888777643 333334888888888888877 677888888888888888877 433 4788888
Q ss_pred cEEEccCCCCcccCc--cccCCCCCCEEEcCCCCCCCccChh---hhhcCccccEEEccCC
Q 002037 514 EVLILKGSRIVELPN--GIGTVSNLKLLDLSNNLFLQVIPPN---VISKLSQLEELYVGNS 569 (977)
Q Consensus 514 ~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~---~i~~L~~L~~L~l~~~ 569 (977)
++|++++|.+..+|. .++.+++|++|++++|.+. .+|.. .+..+++|++|+++++
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcC
Confidence 888888888888876 6788888888888888743 45553 4677888888877665
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=3.1e-12 Score=124.29 Aligned_cols=131 Identities=21% Similarity=0.215 Sum_probs=115.4
Q ss_pred ccCccEEEeccCCCc--cCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCC-CCCCcccCCCCCeE
Q 002037 419 LQNCEKLSLMDGNVT--ALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISS-LAPSLPCLEKLRSL 494 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~L 494 (977)
.++++.|++++|.+. .+|.. ..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467999999999998 77765 6789999999999998887 557899999999999999998 55566779999999
Q ss_pred ecCCCCCCC-C--ccccCCCCccEEEccCCCCcccCc----cccCCCCCCEEEcCCCCCCCccCh
Q 002037 495 HLENTHLND-A--SLIREFGELEVLILKGSRIVELPN----GIGTVSNLKLLDLSNNLFLQVIPP 552 (977)
Q Consensus 495 ~L~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~~~~~~~~p~ 552 (977)
++++|.+.. + ..+..+++|++|++++|.+..+|. .+..+++|++|++++|. ...+|.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 999999988 3 688999999999999999999987 78999999999999997 445554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=3.3e-12 Score=121.36 Aligned_cols=123 Identities=27% Similarity=0.349 Sum_probs=74.7
Q ss_pred CCccEEEccCCCCC--CCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccEEE
Q 002037 442 PRLTTLFLQNNPFA--DIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLI 517 (977)
Q Consensus 442 ~~L~~L~l~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~ 517 (977)
++++.|++++|.+. .++. .+..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555544 3332 345566666666666666665 556666677777777766665 33444566777777
Q ss_pred ccCCCCcccC--ccccCCCCCCEEEcCCCCCCCccCh---hhhhcCccccEEEcc
Q 002037 518 LKGSRIVELP--NGIGTVSNLKLLDLSNNLFLQVIPP---NVISKLSQLEELYVG 567 (977)
Q Consensus 518 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~---~~i~~L~~L~~L~l~ 567 (977)
+++|.++.+| ..++.+++|++|++++|.+. .+|. ..++.+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence 7777766654 55677777777777777643 3343 336667777776553
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=2e-11 Score=121.22 Aligned_cols=123 Identities=17% Similarity=0.350 Sum_probs=58.9
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChh-HHhcCCCccEEEccCCcCCCC-CCCcccCCCCCeEecCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNA-FFEHTREIKNLDLSSTNISSL-APSLPCLEKLRSLHLENTH 500 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~~~~l-p~~~~~l~~L~~L~L~~~~ 500 (977)
+.++++++.+..+|... ..+++.|++++|.+..++.. .|..+++|++|++++|.++.+ |..+..+++|++|+|++|.
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 34555555555554421 12455555555555444432 344555555555555555544 2344555555555555555
Q ss_pred CCC--CccccCCCCccEEEccCCCCccc-CccccCCCCCCEEEcCCCCC
Q 002037 501 LND--ASLIREFGELEVLILKGSRIVEL-PNGIGTVSNLKLLDLSNNLF 546 (977)
Q Consensus 501 l~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~ 546 (977)
+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 444 23344455555555555554433 33344455555555555443
No 131
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.25 E-value=4.8e-11 Score=133.49 Aligned_cols=288 Identities=15% Similarity=0.071 Sum_probs=166.7
Q ss_pred ccccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCC---CCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 71 VPLKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIP---FDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~---f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
..++||+++++.+.+++... ....+.+.|+|++|+||||||+.+++. ... -..++|+++....+...+...++.
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~ 99 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLE 99 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHH
Confidence 35889999999999988742 223568999999999999999999988 333 235778887666677777777777
Q ss_pred Hhhhccc--cchHHHHHHHHHHHHHc-cceEEEEecCcccccc------ccccccCCCC-CCCCeEEEEecCChHHHhhc
Q 002037 145 FLNTELE--GDVEVLRAAFLSERLKR-QKRVLIILDDLWGKLD------LAVVGIPYGE-EHKGCKIILTSRFKEVCDEM 214 (977)
Q Consensus 145 ~l~~~~~--~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~------~~~l~~~~~~-~~~gs~iivTtR~~~v~~~~ 214 (977)
.++.... +.........+.+.+.. +++.+||||+++...+ +..+...+.. ...+..+|+||+.......+
T Consensus 100 ~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~ 179 (386)
T 2qby_A 100 SLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLL 179 (386)
T ss_dssp TTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGC
T ss_pred HhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhh
Confidence 6654322 11223334445555543 4589999999976421 1122111111 23456678888766432221
Q ss_pred c-------CCceEEccCCCHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHhC---CChhHHHHH-HHHhc-----C---
Q 002037 215 E-------STNYVQVEELTDEDRLILFKKKAGL-PEGTKAFDRAAEEVVRQCG---KLPNAIVII-GTALR-----H--- 274 (977)
Q Consensus 215 ~-------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~~---glPLai~~~-~~~l~-----~--- 274 (977)
. ....+++++++.++..+++.+.+.. .....-..++...+++.++ |.|..+..+ ..... +
T Consensus 180 ~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~ 259 (386)
T 2qby_A 180 DPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTK 259 (386)
T ss_dssp TTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 1 1147999999999999999886531 1112223456777888887 999744333 22221 1
Q ss_pred CChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHhhhcC-CCCC-CCcChHHHHHHH--hhhccccc
Q 002037 275 KPVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSCL-FPPY-YSVSMEEFVIHG--LVDRLFPQ 350 (977)
Q Consensus 275 ~~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~-fp~~-~~i~~~~li~~w--~a~g~~~~ 350 (977)
.+.+.+..++.... ...+.-++..+|.+.+..+..++. +-.+ ..+....+.+.. +++.+ .
T Consensus 260 i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~-g- 323 (386)
T 2qby_A 260 VKEEYVYMAKEEIE--------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL-G- 323 (386)
T ss_dssp CCHHHHHHHHHHHH--------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH-T-
T ss_pred cCHHHHHHHHHHHh--------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc-C-
Confidence 14445555544321 234555677888877776665542 2211 223344332221 11110 0
Q ss_pred ccchhhhhhcHHHHHHHHHhcccccC
Q 002037 351 VGLLGEVGNRVHPVVLRLISSSLLLE 376 (977)
Q Consensus 351 ~~~~~~~~~~~~~~l~~L~~~~li~~ 376 (977)
.... ....+..+++.|...+++..
T Consensus 324 ~~~~--~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 324 VEAV--TQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp CCCC--CHHHHHHHHHHHHHHTSEEE
T ss_pred CCCC--CHHHHHHHHHHHHhCCCEEE
Confidence 0000 11234567899999999954
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.25 E-value=4.6e-10 Score=125.61 Aligned_cols=285 Identities=12% Similarity=0.050 Sum_probs=172.5
Q ss_pred cccchHHHHHHHHHHhhc----CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCC-CEEEEEEeCCCCCHHHHHHHHHHH
Q 002037 72 PLKSALEVIKSVMKLLKD----NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF-DKVIFVRVTQTPDVKRVQDEIARF 145 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f-~~~~wv~~~~~~~~~~~~~~i~~~ 145 (977)
.++||+++++++..++.. .....+.+.|+|++|+||||+|+.+++. .... ..++|++++...+...+...++..
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~ 97 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARS 97 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHH
Confidence 578999999999988865 2222348999999999999999999988 3332 367788888888888889999888
Q ss_pred hhhccc--cchHHHHHHHHHHHHH-ccceEEEEecCcccc--ccccccccCCCC-CC---CCeEEEEecCChHHHhhcc-
Q 002037 146 LNTELE--GDVEVLRAAFLSERLK-RQKRVLIILDDLWGK--LDLAVVGIPYGE-EH---KGCKIILTSRFKEVCDEME- 215 (977)
Q Consensus 146 l~~~~~--~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~--~~~~~l~~~~~~-~~---~gs~iivTtR~~~v~~~~~- 215 (977)
++.... +.........+...+. .+++.+||||+++.. .....+...+.. .. .+..||+||+.......+.
T Consensus 98 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~ 177 (389)
T 1fnn_A 98 LNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177 (389)
T ss_dssp TTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred hCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence 865332 1223333444444443 356899999999875 222222222211 11 4677888888765432221
Q ss_pred ------CCceEEccCCCHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHHh---------CCChhHHHHHHHH-h--c---
Q 002037 216 ------STNYVQVEELTDEDRLILFKKKAGL-PEGTKAFDRAAEEVVRQC---------GKLPNAIVIIGTA-L--R--- 273 (977)
Q Consensus 216 ------~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~i~~~~---------~glPLai~~~~~~-l--~--- 273 (977)
....+.+++++.++..+++...+.. .....-.++....+++.+ +|.|..+..+... . .
T Consensus 178 ~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~ 257 (389)
T 1fnn_A 178 STRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQN 257 (389)
T ss_dssp HHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 1236999999999999999887641 011123356788899999 7887544333322 1 1
Q ss_pred CC---ChhHHHHHHHHHhhCCCCCCCCchHHHHHHHHHhhccchhhHHHHHhhhcCCC---CCCCcChHHHHHHHhh---
Q 002037 274 HK---PVREWNEAIKRKKASTPINVEGIPEEVVLCVALGYDQLETVAKSCLQFSCLFP---PYYSVSMEEFVIHGLV--- 344 (977)
Q Consensus 274 ~~---~~~~w~~~l~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~fl~~~~fp---~~~~i~~~~li~~w~a--- 344 (977)
+. +.+....+....... .+.-.+..|+.+.+.++..++.+. .+..+....+...+-.
T Consensus 258 ~~~~i~~~~v~~~~~~~~~~--------------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~ 323 (389)
T 1fnn_A 258 GRKHIAPEDVRKSSKEVLFG--------------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCE 323 (389)
T ss_dssp TCSSCCHHHHHHHHHHHSCC--------------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhhh--------------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHH
Confidence 11 223333333322111 112335667777777776555443 2224555566544322
Q ss_pred -hcccccccchhhhhhcHHHHHHHHHhcccccC
Q 002037 345 -DRLFPQVGLLGEVGNRVHPVVLRLISSSLLLE 376 (977)
Q Consensus 345 -~g~~~~~~~~~~~~~~~~~~l~~L~~~~li~~ 376 (977)
.|.. .. ....+..++++|...++|..
T Consensus 324 ~~~~~----~~--~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 324 EYGER----PR--VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HTTCC----CC--CHHHHHHHHHHHHHTTSSEE
T ss_pred HcCCC----CC--CHHHHHHHHHHHHhCCCeEE
Confidence 1110 00 12345568999999999964
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.25 E-value=3.8e-11 Score=119.25 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=108.7
Q ss_pred cEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC--cccCCCCCeEecCCCCCCC--CccccCCCCccEEEccC
Q 002037 445 TTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS--LPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKG 520 (977)
Q Consensus 445 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~ 520 (977)
++++++++.+..+|...+ ..|++|++++|.+..+++. ++.+++|++|+|++|.+.. +..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 789999999998887553 4899999999999999874 8999999999999999988 67899999999999999
Q ss_pred CCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 521 SRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 521 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
|+++.+|.. +..+++|++|++++|.+....|.. +..+++|++|+++++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCC
Confidence 999988765 889999999999999876655655 8999999999998874
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.3e-11 Score=119.66 Aligned_cols=120 Identities=23% Similarity=0.390 Sum_probs=62.3
Q ss_pred EEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCC
Q 002037 446 TLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRI 523 (977)
Q Consensus 446 ~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l 523 (977)
+++++++.+..+|... ...|++|++++|.+..+|..+..+++|++|+|++|.+.. +..+..+++|++|+|++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 3444444444444322 234555555555555555555555555555555555554 23455555555555555555
Q ss_pred cccCc-cccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCC
Q 002037 524 VELPN-GIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 524 ~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~ 569 (977)
+.+|. .+..+++|++|++++|.+ ..+|.+.+..+++|++|+++++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCC
Confidence 55543 355555666666665553 3344443555555555555543
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.24 E-value=9.7e-12 Score=118.05 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=109.8
Q ss_pred ccCccEEEeccCCCc--cCCCC-CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCC-CCCCcccCCCCCeE
Q 002037 419 LQNCEKLSLMDGNVT--ALPDQ-PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISS-LAPSLPCLEKLRSL 494 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~--~l~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~~~~l~~L~~L 494 (977)
..+++.|++++|.+. .+|.. ..+++|+.|++++|.+..+ ..+..+++|++|++++|.+.. +|..++.+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467999999999998 67765 6899999999999999887 557899999999999999998 66677789999999
Q ss_pred ecCCCCCCC-C--ccccCCCCccEEEccCCCCcccCc----cccCCCCCCEEEcCC
Q 002037 495 HLENTHLND-A--SLIREFGELEVLILKGSRIVELPN----GIGTVSNLKLLDLSN 543 (977)
Q Consensus 495 ~L~~~~l~~-~--~~i~~l~~L~~L~l~~~~l~~lp~----~i~~l~~L~~L~l~~ 543 (977)
++++|.+.. + ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999988 3 789999999999999999999887 589999999999864
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=7.5e-12 Score=122.56 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=112.8
Q ss_pred ccCccEEEeccCCCccCCCCCCCC-CccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCc-ccCCCCCeEec
Q 002037 419 LQNCEKLSLMDGNVTALPDQPKCP-RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSL-PCLEKLRSLHL 496 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~-~~l~~L~~L~L 496 (977)
..+++.|++.+|.+..++....+. +|+.|++++|.+..+ ..+..+++|++|++++|.+..+|+.+ +.+++|++|++
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 95 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL 95 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEEC
Confidence 568899999999999887766555 999999999999887 35788999999999999999998766 89999999999
Q ss_pred CCCCCCC-Cc--cccCCCCccEEEccCCCCcccCcc----ccCCCCCCEEEcCCCCC
Q 002037 497 ENTHLND-AS--LIREFGELEVLILKGSRIVELPNG----IGTVSNLKLLDLSNNLF 546 (977)
Q Consensus 497 ~~~~l~~-~~--~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~ 546 (977)
++|.+.. +. .++.+++|++|++++|.+..+|.. ++.+++|++|++++|..
T Consensus 96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 9999988 44 788999999999999999999986 89999999999998863
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=9.4e-11 Score=116.33 Aligned_cols=123 Identities=24% Similarity=0.384 Sum_probs=109.2
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l 501 (977)
+.++.+++.+..+|... .++++.|++++|.+..++ ..|.++++|++|++++|.++.+++ .+..+++|++|+|++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 46788888888888642 468999999999999888 567999999999999999999876 689999999999999999
Q ss_pred CC--CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCC
Q 002037 502 ND--ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFL 547 (977)
Q Consensus 502 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~ 547 (977)
.. +..+..+++|++|+|++|.++.+|.. +..+++|++|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 88 45799999999999999999999975 789999999999999753
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.22 E-value=7.9e-11 Score=115.38 Aligned_cols=126 Identities=22% Similarity=0.368 Sum_probs=88.8
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~l 501 (977)
+.++..++.+..+|.. -.++|+.|++++|.+..++...|..+++|++|++++|.+..+|+. +..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 4566666666666642 236777888888777777776677777788888888777777663 57777777777777777
Q ss_pred CC-C-ccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCc
Q 002037 502 ND-A-SLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQV 549 (977)
Q Consensus 502 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~ 549 (977)
.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.+...
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 66 2 3456777777777777777777765 36677777777777765443
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.21 E-value=6.2e-12 Score=151.36 Aligned_cols=114 Identities=19% Similarity=0.253 Sum_probs=76.9
Q ss_pred CCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCCCCccEEE
Q 002037 439 PKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLI 517 (977)
Q Consensus 439 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~ 517 (977)
..++.|+.|++++|.+..++...+ .+++|++|+|++|.++.+|..++.|++|++|+|++|.+.. |..++.|++|++|+
T Consensus 221 ~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp -CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred ccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 455667777777777666665554 6677777777777777676667777777777777777666 56667777777777
Q ss_pred ccCCCCcccCccccCCCCCCEEEcCCCCCCCccChh
Q 002037 518 LKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPN 553 (977)
Q Consensus 518 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 553 (977)
|++|.+..+|..++++++|++|+|++|.+...+|..
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~ 335 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI 335 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH
T ss_pred CCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH
Confidence 777777777766777777777777777655544443
No 140
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=2e-10 Score=119.39 Aligned_cols=199 Identities=12% Similarity=0.067 Sum_probs=117.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF 145 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 145 (977)
+..+..++||++.++.+..++..+. ..+.+.|+|++|+||||+|+.+++. ...+.... ........ ...+...
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~ 92 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA----TPCGVCDN-CREIEQG 92 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS----SCCSCSHH-HHHHHTT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----CCCcccHH-HHHHhcc
Confidence 3445678999999999999987654 1358899999999999999999987 32221000 00000000 0011100
Q ss_pred h-----hhccccchHHHHHHHHHHHHH----ccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChHHH-h-
Q 002037 146 L-----NTELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKEVC-D- 212 (977)
Q Consensus 146 l-----~~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~- 212 (977)
. ...............+.+.+. .+++.+||+||++.. ..+..+...+.....+.++|+||+..... .
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~ 172 (250)
T 1njg_A 93 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 172 (250)
T ss_dssp CCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHH
Confidence 0 000000011111122222211 246799999999764 23344433333335578888888765421 1
Q ss_pred hccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 213 EMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 213 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
.......+++++++.++..+++.+.+.... ..-..+....|++.++|.|..+..+...+
T Consensus 173 l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 173 ILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 112235799999999999999998774211 12234567899999999999888776544
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.17 E-value=2.9e-11 Score=145.52 Aligned_cols=151 Identities=21% Similarity=0.261 Sum_probs=100.9
Q ss_pred ccCccEEEeccCCCccCCCC-CCCCCccEEE-----ccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCC
Q 002037 419 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLF-----LQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLR 492 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~-~~~~~L~~L~-----l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~ 492 (977)
...++++++..+.+...+.. ....+|+.+. +..|.+. ++...|..+..|++|+|++|.+..+|..+..+++|+
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLT 250 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCS
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCC
Confidence 34567778877766554332 2222333322 2333333 456678899999999999999999999999999999
Q ss_pred eEecCCCCCCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcC
Q 002037 493 SLHLENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFG 571 (977)
Q Consensus 493 ~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~ 571 (977)
+|+|++|.+.. |..++.+++|++|+|++|.|+.+|..++.|++|++|+|++|.+ ..+|.+ ++.|++|++|++++|..
T Consensus 251 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 251 RLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV-TTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC-CCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC-CccChh-hhcCCCccEEeCCCCcc
Confidence 99999999988 7889999999999999999999999999999999999999974 588988 99999999999999865
Q ss_pred C
Q 002037 572 D 572 (977)
Q Consensus 572 ~ 572 (977)
.
T Consensus 329 ~ 329 (727)
T 4b8c_D 329 E 329 (727)
T ss_dssp C
T ss_pred C
Confidence 4
No 142
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.15 E-value=1.1e-10 Score=135.80 Aligned_cols=99 Identities=21% Similarity=0.280 Sum_probs=47.7
Q ss_pred ccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCC
Q 002037 468 IKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLF 546 (977)
Q Consensus 468 Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~ 546 (977)
|++|++++|.++.+|. ++.+++|++|+|++|.+.. |..++.+++|++|+|++|.++.+| .++.+++|++|++++|.+
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l 520 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL 520 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCC
Confidence 4445555555444443 4445555555555554444 444445555555555555554444 445555555555555543
Q ss_pred CCcc-ChhhhhcCccccEEEccCC
Q 002037 547 LQVI-PPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 547 ~~~~-p~~~i~~L~~L~~L~l~~~ 569 (977)
.... |.. ++.+++|++|++++|
T Consensus 521 ~~~~~p~~-l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 521 QQSAAIQP-LVSCPRLVLLNLQGN 543 (567)
T ss_dssp CSSSTTGG-GGGCTTCCEEECTTS
T ss_pred CCCCCcHH-HhcCCCCCEEEecCC
Confidence 3322 333 445555555555443
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.1e-10 Score=111.10 Aligned_cols=123 Identities=21% Similarity=0.441 Sum_probs=100.1
Q ss_pred ccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC-C-ccccCCCCccEEEccC
Q 002037 444 LTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND-A-SLIREFGELEVLILKG 520 (977)
Q Consensus 444 L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~ 520 (977)
.+.+++.++.+..+|... .+.|++|++++|.+..+|+ .++.+++|++|++++|.+.. + ..++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888888887544 4689999999999988876 46889999999999998887 3 4468899999999999
Q ss_pred CCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCc
Q 002037 521 SRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 521 ~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
|.++.+|.. ++.+++|++|++++|.+ ..+|...+..+++|++|+++++.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 999988876 57889999999999874 46776656788889998887763
No 144
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.12 E-value=6.6e-10 Score=113.59 Aligned_cols=186 Identities=14% Similarity=0.134 Sum_probs=117.5
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++||++.++.+.+++.... .+.+.|+|++|+|||++|+.+++. ...+. ..+.++.+.......+...+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK 90 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence 3445678899999999999998765 445999999999999999999987 33232 344455444444333322221
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChHHH-h-hccCCce
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKEVC-D-EMESTNY 219 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v~-~-~~~~~~~ 219 (977)
...... ....+++.+||+||++... ....+...+.....+.++|+||+..... . .......
T Consensus 91 ~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 91 EFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 111100 0112578999999998652 2233322222334577889888765421 1 1112247
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGT 270 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 270 (977)
+++++++.++..+++.+.+.... ..-..+....+++.++|.|..+..+..
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 89999999999999988764111 112245678899999999986554443
No 145
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.06 E-value=5.2e-10 Score=130.23 Aligned_cols=192 Identities=18% Similarity=0.189 Sum_probs=131.2
Q ss_pred ccCccEEEeccCCCccCCCC-CCCCCccEEEccCCC-------------CCCCChhHHhcCCCccEEE-ccCCcCCCCCC
Q 002037 419 LQNCEKLSLMDGNVTALPDQ-PKCPRLTTLFLQNNP-------------FADIPNAFFEHTREIKNLD-LSSTNISSLAP 483 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~~-~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp~ 483 (977)
.+++++|++++|.+..+|.. ..+++|+.|++++|. ....++..+..+++|+.|+ ++.+.+..++.
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 34566677777777666642 456677777765542 3334455667788888887 55553332221
Q ss_pred ------Cccc--CCCCCeEecCCCCCCCCccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhh
Q 002037 484 ------SLPC--LEKLRSLHLENTHLNDASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVI 555 (977)
Q Consensus 484 ------~~~~--l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i 555 (977)
.+.. ...|++|+|++|.++..+.++.+++|++|++++|.++.+|..++.+++|++|++++|.+. .+| . +
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l 504 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-V 504 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-G
T ss_pred hhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-c
Confidence 1111 125888999998888844488888999999999988888888889999999999988754 466 4 8
Q ss_pred hcCccccEEEccCCcCCccccccccCcCcc-ccccccCCCCcEEEeeecCccccccCC---CCCCCCcceEE
Q 002037 556 SKLSQLEELYVGNSFGDWEVEETANGQNAR-FSEVASLTRLTVLYIHVSNTKVLSVDF---DGPWTNLKRFR 623 (977)
Q Consensus 556 ~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~L~ 623 (977)
+.+++|++|++++|... ... ...++.+++|+.|+++.|.....++.. ...+++|+.|+
T Consensus 505 ~~l~~L~~L~Ls~N~l~----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQ----------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TTCSSCCEEECCSSCCC----------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCcEEECCCCCCC----------CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 88899999988886421 111 456788888999999888776655432 22366777664
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=3.7e-12 Score=127.42 Aligned_cols=104 Identities=18% Similarity=0.232 Sum_probs=53.6
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCCCccccCCCCccEEEcc
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLNDASLIREFGELEVLILK 519 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~~~~i~~l~~L~~L~l~ 519 (977)
.+++|+.|++++|.+..++ .+.++++|++|++++|.+..+|..+..+++|++|++++|.+...+.++.+++|++|+++
T Consensus 46 ~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS 123 (198)
T ss_dssp HTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred cCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence 3445555555555554444 34455555555555555555555444455555555555555543344555555555555
Q ss_pred CCCCcccCc--cccCCCCCCEEEcCCCC
Q 002037 520 GSRIVELPN--GIGTVSNLKLLDLSNNL 545 (977)
Q Consensus 520 ~~~l~~lp~--~i~~l~~L~~L~l~~~~ 545 (977)
+|.+..+|. .+..+++|++|++++|.
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 555554433 34555555555555554
No 147
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.99 E-value=4.3e-12 Score=126.96 Aligned_cols=153 Identities=25% Similarity=0.313 Sum_probs=111.4
Q ss_pred CccEEEccCC--CCCCCChhHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC-CccccCCCCccEEEcc
Q 002037 443 RLTTLFLQNN--PFADIPNAFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND-ASLIREFGELEVLILK 519 (977)
Q Consensus 443 ~L~~L~l~~~--~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~-~~~i~~l~~L~~L~l~ 519 (977)
.++...+.+. .+..++. .+..+++|++|++++|.+..+| .+..+++|++|++++|.+.. +..+..+++|++|+++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 3444444443 3444444 6789999999999999999988 89999999999999999888 6677778999999999
Q ss_pred CCCCcccCccccCCCCCCEEEcCCCCCCCccCh-hhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEE
Q 002037 520 GSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPP-NVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVL 598 (977)
Q Consensus 520 ~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~-~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 598 (977)
+|.++.+| .++.+++|++|++++|.+. .+|. ..+..+++|++|++++|......+............+..+++|+.|
T Consensus 102 ~N~l~~l~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 102 YNQIASLS-GIEKLVNLRVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp EEECCCHH-HHHHHHHSSEEEESEEECC-CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCcCCcCC-ccccCCCCCEEECCCCcCC-chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 99999988 6889999999999999854 3443 3488999999999988742111110000001111235677788877
Q ss_pred E
Q 002037 599 Y 599 (977)
Q Consensus 599 ~ 599 (977)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.96 E-value=2.5e-09 Score=103.88 Aligned_cols=98 Identities=23% Similarity=0.380 Sum_probs=54.7
Q ss_pred cEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC-Cc-cccCCCCccEEEccCC
Q 002037 445 TTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND-AS-LIREFGELEVLILKGS 521 (977)
Q Consensus 445 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-~~-~i~~l~~L~~L~l~~~ 521 (977)
+.++++++.+..+|..+ ...|++|++++|.+..+++ .++.+++|++|+|++|.+.. +. .+..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45566666655555433 2556666666666665533 45556666666666665555 22 2355555666666655
Q ss_pred CCcccCcc-ccCCCCCCEEEcCCCC
Q 002037 522 RIVELPNG-IGTVSNLKLLDLSNNL 545 (977)
Q Consensus 522 ~l~~lp~~-i~~l~~L~~L~l~~~~ 545 (977)
.++.+|.. +..+++|++|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 55555544 5555555566555554
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.95 E-value=3.1e-09 Score=102.88 Aligned_cols=98 Identities=24% Similarity=0.393 Sum_probs=49.4
Q ss_pred cEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC-C-ccccCCCCccEEEccCC
Q 002037 445 TTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND-A-SLIREFGELEVLILKGS 521 (977)
Q Consensus 445 ~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~-~-~~i~~l~~L~~L~l~~~ 521 (977)
++++++++.+..+|... .+.|++|++++|.+..+++ .+..+++|++|+|++|.+.. + ..+..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 44555555555555432 2455555555555555532 45555555555555555544 2 22345555555555555
Q ss_pred CCcccCcc-ccCCCCCCEEEcCCCC
Q 002037 522 RIVELPNG-IGTVSNLKLLDLSNNL 545 (977)
Q Consensus 522 ~l~~lp~~-i~~l~~L~~L~l~~~~ 545 (977)
.++.+|.. +..+++|++|++++|.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 55555443 4455555555555554
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=1.6e-09 Score=117.90 Aligned_cols=169 Identities=17% Similarity=0.184 Sum_probs=119.2
Q ss_pred CCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCC-------CCC-----Cccc
Q 002037 441 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTH-------LND-----ASLI 507 (977)
Q Consensus 441 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~-------l~~-----~~~i 507 (977)
|++|+.+.+.. .+..++...|.++.+|+.|+++++.+..+++ .+..+.++.++.+.... +.. ...+
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 78888888887 7777788888888888888888887776665 56666666666654411 000 0000
Q ss_pred --------------------------------------------cCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcC
Q 002037 508 --------------------------------------------REFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLS 542 (977)
Q Consensus 508 --------------------------------------------~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~ 542 (977)
..+++|+.+++++|+++.+|.. +..+.+|+.|++.
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 0267888888888888888865 7788888888888
Q ss_pred CCCCCCccChhhhhcCcccc-EEEccCCcCCccccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcce
Q 002037 543 NNLFLQVIPPNVISKLSQLE-ELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKR 621 (977)
Q Consensus 543 ~~~~~~~~p~~~i~~L~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 621 (977)
++ +..++.+++..+.+|+ .+.+.+.. ..-....+.++++|+.+++..+....++...+..+++|+.
T Consensus 259 ~n--i~~I~~~aF~~~~~L~~~l~l~~~l-----------~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 259 HN--LKTIGQRVFSNCGRLAGTLELPASV-----------TAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TT--CCEECTTTTTTCTTCCEEEEECTTC-----------CEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCE
T ss_pred cc--cceehHHHhhCChhccEEEEEcccc-----------eEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhh
Confidence 86 5667777788888888 88876531 1112245677888888888777777777777777888876
Q ss_pred EE
Q 002037 622 FR 623 (977)
Q Consensus 622 L~ 623 (977)
+.
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 64
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.90 E-value=7.1e-09 Score=100.71 Aligned_cols=107 Identities=17% Similarity=0.276 Sum_probs=94.1
Q ss_pred cEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cccCCCCCeEecCCCCC
Q 002037 423 EKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPCLEKLRSLHLENTHL 501 (977)
Q Consensus 423 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~l 501 (977)
+.++++++.+..+|... .++|+.|++++|.+..+++..|.++++|++|+|++|.+..+|+. +..+++|++|+|++|.+
T Consensus 15 ~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l 93 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI-PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL 93 (174)
T ss_dssp SEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cEEEeCCCCCCccCCCc-CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence 56888888898888743 38999999999999999888899999999999999999999985 58999999999999999
Q ss_pred CC-Cc-cccCCCCccEEEccCCCCcccCccc
Q 002037 502 ND-AS-LIREFGELEVLILKGSRIVELPNGI 530 (977)
Q Consensus 502 ~~-~~-~i~~l~~L~~L~l~~~~l~~lp~~i 530 (977)
.. +. .+..+++|++|++++|.+...|..+
T Consensus 94 ~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~ 124 (174)
T 2r9u_A 94 KSIPRGAFDNLKSLTHIYLYNNPWDCECRDI 124 (174)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCBCTTBGGG
T ss_pred ceeCHHHhccccCCCEEEeCCCCcccccccH
Confidence 88 43 4899999999999999888666543
No 152
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.90 E-value=5.8e-09 Score=113.24 Aligned_cols=187 Identities=15% Similarity=0.169 Sum_probs=116.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++|+++.++.+.+++..+. .+.+.|+|++|+||||+|+.+++. ...+. .+++++.+.......+ +++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~ 93 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQI 93 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHH
Confidence 3445678899999999999988765 444999999999999999999988 32222 3445554443333222 2222
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChHH-Hhh-ccCCce
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKEV-CDE-MESTNY 219 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v-~~~-~~~~~~ 219 (977)
+.+..... .+..+++.++|+||++... ....+...+.....++++|+||+...- ... ......
T Consensus 94 ~~~~~~~~-------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 94 KHFAQKKL-------------HLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHHBCC-------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhccc-------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 22110000 0002468999999998642 233333222233456788888876432 111 122348
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh-HHHHHHH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVIIGT 270 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~~ 270 (977)
+++.+++.++..+++.+.+.... ..-.++....|++.++|.|. |+..+..
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLED-VKYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999988764111 11224567889999999995 4444443
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=9.2e-09 Score=99.55 Aligned_cols=105 Identities=15% Similarity=0.262 Sum_probs=92.4
Q ss_pred ccEEEeccCCCccCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCCC-cccCCCCCeEecCCCC
Q 002037 422 CEKLSLMDGNVTALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAPS-LPCLEKLRSLHLENTH 500 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-~~~l~~L~~L~L~~~~ 500 (977)
.+.++++++.+..+|... .++++.|++++|.+..+++..|.++++|++|++++|.+..+|+. +..+++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 457889999999888644 48999999999999999888899999999999999999999885 5899999999999999
Q ss_pred CCC-C-ccccCCCCccEEEccCCCCcccC
Q 002037 501 LND-A-SLIREFGELEVLILKGSRIVELP 527 (977)
Q Consensus 501 l~~-~-~~i~~l~~L~~L~l~~~~l~~lp 527 (977)
+.. + ..+..+++|++|+|++|.+.-.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 988 3 46899999999999999776443
No 154
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.83 E-value=9.1e-09 Score=111.67 Aligned_cols=178 Identities=12% Similarity=0.083 Sum_probs=105.1
Q ss_pred CcccccchHHHHHHHHHHhhc---CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKD---NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
.+..++|++..++.+..++.. .......+.|+|+.|+|||++|+.+++. ... .++++.+.......+..
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~~~~~~~~~~l~~---- 82 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTSGPAIEKPGDLAA---- 82 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEECTTTCCSHHHHHH----
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEeccccCChHHHHH----
Confidence 455688888888888777642 1112467899999999999999999987 432 23444433322222111
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCC--------C----------CCCCeEEEEe
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYG--------E----------EHKGCKIILT 204 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~--------~----------~~~gs~iivT 204 (977)
.+.. . -.++.+|++|+++... ....+...+. . ..++.++|.|
T Consensus 83 ~l~~----------------~--~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 83 ILAN----------------S--LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp HHTT----------------T--CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred HHHH----------------h--ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 1110 0 1345688889887642 1111100000 0 0123456666
Q ss_pred cCChH-HHhhc--cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 205 SRFKE-VCDEM--ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 205 tR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
|.... +...+ .....+.+.+++.++..+++.+.+.... ..-..+....++++++|.|-.+..+...+
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 65432 11111 1124789999999999999988764221 12234678899999999998877666554
No 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=2.5e-08 Score=108.37 Aligned_cols=187 Identities=11% Similarity=0.126 Sum_probs=113.8
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCHHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
..+..++|+++.++.+..++..+. .+.+.|+|++|+||||+|+.+++. ...+. ..+.++.+.......+...+ .
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 98 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKV-K 98 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHH-H
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHH-H
Confidence 345568899999999999988765 445999999999999999999987 22221 23334333211111100000 0
Q ss_pred HhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChHH-Hhh-ccCCceE
Q 002037 145 FLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKEV-CDE-MESTNYV 220 (977)
Q Consensus 145 ~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v-~~~-~~~~~~~ 220 (977)
.+... ..+..+++.++|+||++.. .....+...+.....+.++|+||....- ... ......+
T Consensus 99 ~~~~~--------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~ 164 (327)
T 1iqp_A 99 EFART--------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIF 164 (327)
T ss_dssp HHHHS--------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEE
T ss_pred HHHhh--------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEE
Confidence 00000 0011256889999999865 2233333222233457788888876532 111 1112378
Q ss_pred EccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHHHh
Q 002037 221 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGTAL 272 (977)
Q Consensus 221 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~~l 272 (977)
++.+++.++..+++.+.+.... ..-..+....|++.++|.|..+..+....
T Consensus 165 ~~~~l~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 165 RFRPLRDEDIAKRLRYIAENEG-LELTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTT-CEECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EecCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 9999999999999988764221 12334677889999999998665544433
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=1.8e-08 Score=109.53 Aligned_cols=155 Identities=14% Similarity=0.160 Sum_probs=98.5
Q ss_pred CCChhHHhc--------CCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCCCC-
Q 002037 456 DIPNAFFEH--------TREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGSRI- 523 (977)
Q Consensus 456 ~~~~~~~~~--------l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~~l- 523 (977)
.++...|.+ +.+|+.|++++ .+..+++ .|..|.+|+.|++.++.+.. +..+..+.++.++.+.....
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 456677888 99999999998 8888876 78899999999999988765 45566666676666544210
Q ss_pred ---ccc-----------------------Cccc----------------------------cCCCCCCEEEcCCCCCCCc
Q 002037 524 ---VEL-----------------------PNGI----------------------------GTVSNLKLLDLSNNLFLQV 549 (977)
Q Consensus 524 ---~~l-----------------------p~~i----------------------------~~l~~L~~L~l~~~~~~~~ 549 (977)
..+ |..+ ..+++|+.|++++|. ...
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~ 240 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTN-ATT 240 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBC-CCE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCC-cce
Confidence 000 0000 025677777777765 456
Q ss_pred cChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCc-EEEeeecCccccccCCCCCCCCcceEEE
Q 002037 550 IPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLT-VLYIHVSNTKVLSVDFDGPWTNLKRFRV 624 (977)
Q Consensus 550 ~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l 624 (977)
+|...+..+++|+++++.++.. .-....+.++++|+ .+.+.. ....+....+..+++|+.+.+
T Consensus 241 I~~~aF~~~~~L~~l~l~~ni~-----------~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHNLK-----------TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTTCC-----------EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred ecHhhhhCCCCCCEEECCcccc-----------eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 6766677777777777765411 11113456666777 777665 444555555556666666554
No 157
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=8.6e-07 Score=98.32 Aligned_cols=184 Identities=15% Similarity=0.218 Sum_probs=118.5
Q ss_pred CccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecC
Q 002037 421 NCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLE 497 (977)
Q Consensus 421 ~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~ 497 (977)
.+..+.+. +.++.++. +.++ +|+.+.+..+ +..+....|.++ .|+.+.+.. .+..++. .+..|.+|+.+++.
T Consensus 114 ~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 34444444 23444433 2344 6888887665 666777777774 688888876 5666654 67788888888888
Q ss_pred CCCCCC-CccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccc
Q 002037 498 NTHLND-ASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEV 575 (977)
Q Consensus 498 ~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~ 575 (977)
++.+.. +.......+|+.+.+.. +++.++.. +.++.+|+.+++..+ ...++..++.. .+|+.+.+.++.
T Consensus 189 ~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~i----- 259 (401)
T 4fdw_A 189 KTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNGV----- 259 (401)
T ss_dssp TSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETTC-----
T ss_pred CCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCCc-----
Confidence 887766 33333357888888874 47777654 677888888888765 45666666666 678888775431
Q ss_pred cccccCcCccccccccCCCCcEEEeeecCcc-----ccccCCCCCCCCcceEEE
Q 002037 576 EETANGQNARFSEVASLTRLTVLYIHVSNTK-----VLSVDFDGPWTNLKRFRV 624 (977)
Q Consensus 576 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l 624 (977)
..-....+..+++|+.+.+..+... .+....+..+++|+.+.+
T Consensus 260 ------~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 260 ------TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp ------CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred ------cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 1111245667788888888765433 345555666666666554
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.62 E-value=7.3e-07 Score=98.88 Aligned_cols=167 Identities=14% Similarity=0.170 Sum_probs=126.6
Q ss_pred CCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEEE
Q 002037 441 CPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLI 517 (977)
Q Consensus 441 ~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~ 517 (977)
+..+..+.+.. .+..+....|.++ +|+.+.+..+ +..++. .+.+ .+|+.+.+.. .+.. ...+..+.+|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 46677777764 4667777788875 7999999876 777766 5556 4799999986 4554 56788999999999
Q ss_pred ccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccccCCCCcE
Q 002037 518 LKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTV 597 (977)
Q Consensus 518 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 597 (977)
+.+++++.+|...-...+|+.+.+..+ ...++..++..+++|+.+.+..+... -....+.+ .+|+.
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~l~~-----------I~~~aF~~-~~L~~ 252 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPENVST-----------IGQEAFRE-SGITT 252 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTTCCE-----------ECTTTTTT-CCCSE
T ss_pred cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCCccC-----------cccccccc-CCccE
Confidence 999999999988666799999999865 67788888999999999998764210 11122333 57888
Q ss_pred EEeeecCccccccCCCCCCCCcceEEEEec
Q 002037 598 LYIHVSNTKVLSVDFDGPWTNLKRFRVCVN 627 (977)
Q Consensus 598 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 627 (977)
+.+. +....+....+..+++|+.+.+..+
T Consensus 253 i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 253 VKLP-NGVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp EEEE-TTCCEECTTTTTTCTTCCEEEEESS
T ss_pred EEeC-CCccEEChhHhhCCCCCCEEEeCCc
Confidence 8884 4566677777888999999988654
No 159
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.62 E-value=2.2e-07 Score=100.48 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=113.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++|+++.++.+.+++..+. .+.+.++|+.|+|||++|+.+++. ...+. ..+.++.+.......+...+
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 89 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKI- 89 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTC--CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHH-
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCC--CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHH-
Confidence 3445678899999999998887755 445899999999999999999987 33222 23344444322211111000
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChHH-Hhh-ccCCce
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKEV-CDE-MESTNY 219 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~v-~~~-~~~~~~ 219 (977)
..+.... .+..+++.++|+|+++... ....+...+.....+.++|+||....- ... ......
T Consensus 90 ~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 90 KEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp HHHHHSC--------------CSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred HHHHhcC--------------CCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 0000000 0112568899999998652 233343334334467788888766542 111 112247
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGT 270 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 270 (977)
+++.+++.++..+++.+.+.... ..-..+....+++.++|.+..+.....
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEG-VKITEDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTC-CCBCHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99999999999999988764221 122345678888999999876544433
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.56 E-value=3.5e-07 Score=101.32 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=109.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
.+..++||++.++.+...+..+. ..+.+.|+|+.|+||||+|+.+++. ...... .............+...-.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~ 87 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-----TATPCGVCDNCREIEQGRF 87 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS-----CSSCCSSSHHHHHHHTSCC
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-----CCCCCcccHHHHHHhccCC
Confidence 34568899999999999887654 1347899999999999999999987 211100 0000000000111110000
Q ss_pred -----hccccchHHHHHHHHHHHHH----ccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChH-HHhh-c
Q 002037 148 -----TELEGDVEVLRAAFLSERLK----RQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKE-VCDE-M 214 (977)
Q Consensus 148 -----~~~~~~~~~~~~~~l~~~l~----~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~-~ 214 (977)
..............+.+.+. .+++.++|+||++... ....+...+.....+..+|++|.... +... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 167 (373)
T 1jr3_A 88 VDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTIL 167 (373)
T ss_dssp SSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHH
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHH
Confidence 00000000001112222221 2567899999997642 23333322223344667777776443 2111 1
Q ss_pred cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHHH
Q 002037 215 ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIGT 270 (977)
Q Consensus 215 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~~ 270 (977)
.....+++.+++.++..+++.+.+.... ..-..+....|++.++|.|..+..+..
T Consensus 168 sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 168 SRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hheeEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2235789999999999999987663111 112245678899999999987766543
No 161
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.55 E-value=8.8e-07 Score=93.33 Aligned_cols=165 Identities=13% Similarity=0.181 Sum_probs=101.1
Q ss_pred ccchHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCC-----C-C-EEEEEEeCCCCCHHHHHHHH
Q 002037 73 LKSALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIP-----F-D-KVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~-----f-~-~~~wv~~~~~~~~~~~~~~i 142 (977)
+.+|+++++++...|... ......+.|+|++|+|||++|+.|++. ... . + .++.|+.....+...++..|
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 568999999998776541 123678899999999999999999988 211 1 1 35677777777888999999
Q ss_pred HHHhhhccc-cchHHHHHHHHHHHH--HccceEEEEecCccccccccccccCC----CCCCCCeEEEEecCChH-----H
Q 002037 143 ARFLNTELE-GDVEVLRAAFLSERL--KRQKRVLIILDDLWGKLDLAVVGIPY----GEEHKGCKIILTSRFKE-----V 210 (977)
Q Consensus 143 ~~~l~~~~~-~~~~~~~~~~l~~~l--~~~~~~LlvlDdv~~~~~~~~l~~~~----~~~~~gs~iivTtR~~~-----v 210 (977)
++++..... ..........+...+ ..++++++|||+++...+.+.+...+ ...++ ..||.++...+ +
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~-~~vI~i~n~~d~~~~~L 180 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSK-LSIICVGGHNVTIREQI 180 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCC-EEEEEECCSSCCCHHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCc-EEEEEEecCcccchhhc
Confidence 998854311 111112222333322 23578999999998764222221111 11122 23344443322 1
Q ss_pred ----HhhccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 211 ----CDEMESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 211 ----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
...+. ...+.+++.+.+|-.+++.+++.
T Consensus 181 ~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 181 NIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 11221 14689999999999999988764
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.3e-07 Score=103.61 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=61.0
Q ss_pred EEccCC-CCCCCChhHHhcCCCccEEEccC-CcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEEEccCC
Q 002037 447 LFLQNN-PFADIPNAFFEHTREIKNLDLSS-TNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVLILKGS 521 (977)
Q Consensus 447 L~l~~~-~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L~l~~~ 521 (977)
++++++ .+..+|. +..+.+|++|+|++ |.+..+|+ .++.+.+|++|+|++|.+.. +..++.+++|++|+|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 355555 5555555 55666666666664 66666653 56666666666666666665 345566666777777776
Q ss_pred CCcccCccccCCCCCCEEEcCCCCCC
Q 002037 522 RIVELPNGIGTVSNLKLLDLSNNLFL 547 (977)
Q Consensus 522 ~l~~lp~~i~~l~~L~~L~l~~~~~~ 547 (977)
+|..+|..+.....|++|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 66666655443333777777666543
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=2.2e-07 Score=101.72 Aligned_cols=98 Identities=29% Similarity=0.355 Sum_probs=84.2
Q ss_pred EEEccCC-cCCCCCCCcccCCCCCeEecCC-CCCCC--CccccCCCCccEEEccCCCCcccCc-cccCCCCCCEEEcCCC
Q 002037 470 NLDLSST-NISSLAPSLPCLEKLRSLHLEN-THLND--ASLIREFGELEVLILKGSRIVELPN-GIGTVSNLKLLDLSNN 544 (977)
Q Consensus 470 ~L~l~~~-~~~~lp~~~~~l~~L~~L~L~~-~~l~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~ 544 (977)
.++++++ .+..+|. +..+.+|++|+|++ |.+.. +..++.+++|++|+|++|+|+.+|. .+++|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4688888 8999999 99999999999996 88888 3679999999999999999998876 4799999999999999
Q ss_pred CCCCccChhhhhcCccccEEEccCCc
Q 002037 545 LFLQVIPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 545 ~~~~~~p~~~i~~L~~L~~L~l~~~~ 570 (977)
.+ ..+|+..+..++ |++|++.++.
T Consensus 91 ~l-~~~~~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 91 AL-ESLSWKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp CC-SCCCSTTTCSCC-CCEEECCSSC
T ss_pred cc-ceeCHHHcccCC-ceEEEeeCCC
Confidence 84 567777555555 9999998764
No 164
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.48 E-value=1.2e-08 Score=112.08 Aligned_cols=151 Identities=15% Similarity=0.089 Sum_probs=91.4
Q ss_pred ccCccEEEeccCCCccCC-----CC--CCCCCccEEEccCCCCCCCC-hhHHhcCCCccEEEccCCcCCCCC-----CCc
Q 002037 419 LQNCEKLSLMDGNVTALP-----DQ--PKCPRLTTLFLQNNPFADIP-NAFFEHTREIKNLDLSSTNISSLA-----PSL 485 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~-----~~--~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~Lr~L~l~~~~~~~lp-----~~~ 485 (977)
.+.++.+++++|.+.... .. ...++|+.|++++|.+.... ..+...+++|+.|++++|.+.... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 456778888877765321 11 23467888888888765322 122334567788888888765321 112
Q ss_pred -ccCCCCCeEecCCCCCCC------CccccCCCCccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCCCCc----
Q 002037 486 -PCLEKLRSLHLENTHLND------ASLIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQV---- 549 (977)
Q Consensus 486 -~~l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~---- 549 (977)
...++|++|+|++|.+.+ +..+..+++|++|+|++|.+. .++..+...++|++|++++|.+...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 235677888888877654 233456777777888777765 2345566667777777777765432
Q ss_pred cChhhhhcCccccEEEccCCc
Q 002037 550 IPPNVISKLSQLEELYVGNSF 570 (977)
Q Consensus 550 ~p~~~i~~L~~L~~L~l~~~~ 570 (977)
++.. +...++|++|++++|.
T Consensus 231 l~~~-L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARA-AREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHH-HHHCSSCCEEECTTSS
T ss_pred HHHH-HHhCCCCCEEeccCCC
Confidence 1111 3455677777777663
No 165
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.48 E-value=2.9e-07 Score=91.20 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=84.6
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cC------CCCEEEEEEeCCCCCHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EI------PFDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~------~f~~~~wv~~~~~~~~~~~~~ 140 (977)
.+..++||+++++++.+.+.... .+.+.|+|++|+|||++|+.+++. .. ....+++++++. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH-
T ss_pred cccccccchHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh-
Confidence 34568899999999999987754 567899999999999999999987 21 122344553321 10
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHH-HccceEEEEecCccccc---------cccccccCCCCCCCCeEEEEecCChHH
Q 002037 141 EIARFLNTELEGDVEVLRAAFLSERL-KRQKRVLIILDDLWGKL---------DLAVVGIPYGEEHKGCKIILTSRFKEV 210 (977)
Q Consensus 141 ~i~~~l~~~~~~~~~~~~~~~l~~~l-~~~~~~LlvlDdv~~~~---------~~~~l~~~~~~~~~gs~iivTtR~~~v 210 (977)
...............+.+.+ ..+++.+|||||++... ++..+...+.. ..+..+|+||.....
T Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~ 163 (195)
T 1jbk_A 91 ------AGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-RGELHCVGATTLDEY 163 (195)
T ss_dssp ------TTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-TTSCCEEEEECHHHH
T ss_pred ------ccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-cCCeEEEEeCCHHHH
Confidence 00000000111122222222 24568899999997652 11111111111 224457777765542
Q ss_pred Hh------hc-cCCceEEccCCCHHHHHHHH
Q 002037 211 CD------EM-ESTNYVQVEELTDEDRLILF 234 (977)
Q Consensus 211 ~~------~~-~~~~~~~l~~L~~~~~~~lf 234 (977)
.. .+ ..-..+.+++++.++..+++
T Consensus 164 ~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 164 RQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 21 11 11125889999988876654
No 166
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.45 E-value=9.8e-06 Score=84.95 Aligned_cols=176 Identities=15% Similarity=0.190 Sum_probs=97.2
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccce
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 171 (977)
..+.+.|+|+.|+|||++|+.+++. ...| +.++.+... .+. ...........+.......+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~---~~i~~~~~~------------~g~--~~~~~~~~~~~~~~~~~~~~~ 125 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPF---IKICSPDKM------------IGF--SETAKCQAMKKIFDDAYKSQL 125 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSE---EEEECGGGC------------TTC--CHHHHHHHHHHHHHHHHTSSE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCE---EEEeCHHHh------------cCC--chHHHHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999988 3332 222222110 000 000000111112222223568
Q ss_pred EEEEecCccccc------------cccccc---cCCCCCCCCeEEEEecCChHHHhh--c-cC-CceEEccCCCH-HHHH
Q 002037 172 VLIILDDLWGKL------------DLAVVG---IPYGEEHKGCKIILTSRFKEVCDE--M-ES-TNYVQVEELTD-EDRL 231 (977)
Q Consensus 172 ~LlvlDdv~~~~------------~~~~l~---~~~~~~~~gs~iivTtR~~~v~~~--~-~~-~~~~~l~~L~~-~~~~ 231 (977)
.+|+|||++... .+..+. ...........||.||...+.... . .. ...+++++++. ++..
T Consensus 126 ~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~ 205 (272)
T 1d2n_A 126 SCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLL 205 (272)
T ss_dssp EEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHH
T ss_pred cEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHH
Confidence 899999987530 011121 111123344567888887765432 1 11 35689999988 6666
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHHhCC------ChhHHHHHHHHhcCCChhHHHHHHHHHhhCC
Q 002037 232 ILFKKKAGLPEGTKAFDRAAEEVVRQCGK------LPNAIVIIGTALRHKPVREWNEAIKRKKAST 291 (977)
Q Consensus 232 ~lf~~~~~~~~~~~~~~~~~~~i~~~~~g------lPLai~~~~~~l~~~~~~~w~~~l~~l~~~~ 291 (977)
+++.+... -..+....|++.+.| +.-++..+-..........+..++..+....
T Consensus 206 ~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 206 EALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhchHHHHHHHHHHHHHcC
Confidence 66665321 124457788888887 4444444444433345567777777666543
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.44 E-value=1.4e-07 Score=97.42 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchH
Q 002037 77 LEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVE 155 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 155 (977)
...++.+..+..... .+.+.|+|++|+||||+|+.+++. ......++|++++...+. +.+
T Consensus 37 ~~~~~~l~~~~~~~~--~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~------~~~----------- 97 (242)
T 3bos_A 37 DELIGALKSAASGDG--VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI------STA----------- 97 (242)
T ss_dssp HHHHHHHHHHHHTCS--CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS------CGG-----------
T ss_pred HHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH------HHH-----------
Confidence 456666666665543 568999999999999999999988 333345667766432110 000
Q ss_pred HHHHHHHHHHHHccceEEEEecCcccccc----ccccccCCCC-CCCC-eEEEEecCCh---------HHHhhccCCceE
Q 002037 156 VLRAAFLSERLKRQKRVLIILDDLWGKLD----LAVVGIPYGE-EHKG-CKIILTSRFK---------EVCDEMESTNYV 220 (977)
Q Consensus 156 ~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~g-s~iivTtR~~---------~v~~~~~~~~~~ 220 (977)
..+.+ .++.+||+||++.... ...+...+.. ...+ .+||+||+.. .+.........+
T Consensus 98 ------~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i 169 (242)
T 3bos_A 98 ------LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTY 169 (242)
T ss_dssp ------GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEE
T ss_pred ------HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceE
Confidence 00111 3567899999976522 1212111100 0112 2477777632 222222223579
Q ss_pred EccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHH
Q 002037 221 QVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 221 ~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 269 (977)
++++++.++..+++.+.+.... ..-.+++...+++.++|.+-.+..+.
T Consensus 170 ~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 170 QLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp ECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999999988764111 12234667888899999876655443
No 168
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.40 E-value=1.6e-06 Score=91.92 Aligned_cols=183 Identities=16% Similarity=0.161 Sum_probs=103.3
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcC-----------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 65 IPTPEFVPLKSALEVIKSVMKLLKDN-----------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 65 ~~~~~~~~~~gr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
.|...+..++|.++.++++.+.+... -...+.+.|+|++|+|||++|+.+++. ...| +.+..+.-
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~~~~~ 87 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVVGSEL 87 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEEGGGG
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehHHH
Confidence 34455667889998888888766331 112457999999999999999999988 3322 23332221
Q ss_pred CCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc----------------cccccccCC--CC
Q 002037 133 PDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL----------------DLAVVGIPY--GE 194 (977)
Q Consensus 133 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~----------------~~~~l~~~~--~~ 194 (977)
.. ...+. .......+.......++.+|+|||++... .+..+...+ ..
T Consensus 88 ~~--------------~~~~~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 152 (285)
T 3h4m_A 88 VK--------------KFIGE-GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD 152 (285)
T ss_dssp CC--------------CSTTH-HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC
T ss_pred HH--------------hccch-HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC
Confidence 10 00000 11112222223333567899999997531 011111111 12
Q ss_pred CCCCeEEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCC-ChhHHHH
Q 002037 195 EHKGCKIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK-LPNAIVI 267 (977)
Q Consensus 195 ~~~gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~ 267 (977)
...+..||.||...+. .........+.++..+.++..+++...+....... ......+++.+.| .|-.|..
T Consensus 153 ~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 153 ARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAE--DVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCT--TCCHHHHHHHCTTCCHHHHHH
T ss_pred CCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCC--cCCHHHHHHHcCCCCHHHHHH
Confidence 2346778888876543 11112224789999999999999998875322111 1124667777777 3434433
No 169
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.34 E-value=6.2e-08 Score=106.47 Aligned_cols=160 Identities=16% Similarity=0.196 Sum_probs=112.2
Q ss_pred CCCccEEEccCCCCCCCChhHHhcC-----CCccEEEccCCcCCC--CCCCcccCCCCCeEecCCCCCCC--Cccc----
Q 002037 441 CPRLTTLFLQNNPFADIPNAFFEHT-----REIKNLDLSSTNISS--LAPSLPCLEKLRSLHLENTHLND--ASLI---- 507 (977)
Q Consensus 441 ~~~L~~L~l~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~~~~--lp~~~~~l~~L~~L~L~~~~l~~--~~~i---- 507 (977)
.+.|+.|++++|.+.......+..+ +.|++|++++|.+.. +..-...+.+|++|+|++|.+.+ ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4578899999998875444333333 789999999998763 22223456789999999999876 2333
Q ss_pred -cCCCCccEEEccCCCCcc-----cCccccCCCCCCEEEcCCCCCCCc----cChhhhhcCccccEEEccCCcCCccccc
Q 002037 508 -REFGELEVLILKGSRIVE-----LPNGIGTVSNLKLLDLSNNLFLQV----IPPNVISKLSQLEELYVGNSFGDWEVEE 577 (977)
Q Consensus 508 -~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~~~~----~p~~~i~~L~~L~~L~l~~~~~~~~~~~ 577 (977)
...++|++|+|++|.++. ++..+..+++|++|++++|.+... ++.. +...++|++|++++|.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~--- 226 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDT--- 226 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHH---
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHH---
Confidence 346789999999998863 566667889999999999985432 1222 56778999999998743211
Q ss_pred cccCcCccccccccCCCCcEEEeeecCccc
Q 002037 578 TANGQNARFSEVASLTRLTVLYIHVSNTKV 607 (977)
Q Consensus 578 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 607 (977)
........+...++|+.|+++.|....
T Consensus 227 ---g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 227 ---AALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp ---HHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred ---HHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 011222445677889999999887643
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.34 E-value=5.7e-06 Score=92.50 Aligned_cols=179 Identities=11% Similarity=0.107 Sum_probs=106.9
Q ss_pred CCCcccccchHHHH---HHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 67 TPEFVPLKSALEVI---KSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 67 ~~~~~~~~gr~~~~---~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
+..+..++|++..+ ..+...+..+. ...+.|+|+.|+||||+|+.+++. ...|. .++... .....+ +.+
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~a~~-~~~~~i-r~~ 94 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE---RISAVT-SGVKEI-REA 94 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEETTT-CCHHHH-HHH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEEecc-CCHHHH-HHH
Confidence 34566788888888 77778887776 678999999999999999999988 43331 222221 222222 111
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChHH---HhhccCC
Q 002037 143 ARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKEV---CDEMEST 217 (977)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~v---~~~~~~~ 217 (977)
... .......+++.+|++|+++.. ...+.+...+. .+.-.-|..||.+... .......
T Consensus 95 ~~~----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le-~~~v~lI~att~n~~~~l~~aL~sR~ 157 (447)
T 3pvs_A 95 IER----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE-DGTITFIGATTENPSFELNSALLSRA 157 (447)
T ss_dssp HHH----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHH-TTSCEEEEEESSCGGGSSCHHHHTTE
T ss_pred HHH----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh-cCceEEEecCCCCcccccCHHHhCce
Confidence 111 111111367899999999765 22333322222 2222334446665532 1111223
Q ss_pred ceEEccCCCHHHHHHHHHHhcCCC------CCChhhHHHHHHHHHHhCCChhHHHHHH
Q 002037 218 NYVQVEELTDEDRLILFKKKAGLP------EGTKAFDRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 218 ~~~~l~~L~~~~~~~lf~~~~~~~------~~~~~~~~~~~~i~~~~~glPLai~~~~ 269 (977)
..+.+++++.++..+++.+.+... ....-.++....+++.++|.+-.+..+.
T Consensus 158 ~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 158 RVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred eEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 478899999999999998876421 1122345678889999999876554433
No 171
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.33 E-value=7e-06 Score=85.63 Aligned_cols=181 Identities=15% Similarity=0.168 Sum_probs=95.1
Q ss_pred cccccchHHHHHHH---HHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHH
Q 002037 70 FVPLKSALEVIKSV---MKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRV 138 (977)
Q Consensus 70 ~~~~~gr~~~~~~l---~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~ 138 (977)
+..++|.++.++.+ +..+.... ...+.+.|+|++|+|||++|+.+++. ... .+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~~~~~~~~--- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMAGAEFVEV--- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEETTTTSSS---
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---EEEechHHHHhh---
Confidence 33455555555544 44433221 12456889999999999999999988 433 234444432110
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc-------------c----ccccccCCC--CCCCCe
Q 002037 139 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL-------------D----LAVVGIPYG--EEHKGC 199 (977)
Q Consensus 139 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------------~----~~~l~~~~~--~~~~gs 199 (977)
..+.. ......+........+.+|+||+++... . +..+...+. ....+.
T Consensus 79 -----------~~~~~-~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~ 146 (262)
T 2qz4_A 79 -----------IGGLG-AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHV 146 (262)
T ss_dssp -----------STTHH-HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCE
T ss_pred -----------ccChh-HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCE
Confidence 00001 1111222222223467899999997641 0 111111111 122356
Q ss_pred EEEEecCChHHHh-hc----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh-HHHHH
Q 002037 200 KIILTSRFKEVCD-EM----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVII 268 (977)
Q Consensus 200 ~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~ 268 (977)
.||.||....... .. .....+.++..+.++..+++...+...............+++.+.|.+- .|..+
T Consensus 147 ~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 147 IVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 7777776654311 11 1235788999999999999988764222222222345778888888754 44433
No 172
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.32 E-value=1.5e-06 Score=95.36 Aligned_cols=194 Identities=12% Similarity=0.126 Sum_probs=110.6
Q ss_pred CCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cC--CCC-EEEEEEeCCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI--PFD-KVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~--~f~-~~~wv~~~~~~~~~~~~~~i~ 143 (977)
..+..++|+++.++.+..++..+. ...+.|+|+.|+||||+|+.+++. .. .+. .++.++.+.......+...+.
T Consensus 34 ~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (353)
T 1sxj_D 34 KNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVK 111 (353)
T ss_dssp SSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHH
T ss_pred CCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHH
Confidence 345568899999999999888765 334899999999999999999987 21 121 233444444333332222221
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChH-HHhh-ccCCce
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKE-VCDE-MESTNY 219 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~-~~~~~~ 219 (977)
............. .......+++-++++|+++... ....+...+.......++|++|.... +... ......
T Consensus 112 ~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~ 186 (353)
T 1sxj_D 112 NFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSK 186 (353)
T ss_dssp HHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEE
T ss_pred HHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCce
Confidence 1111100000000 0001112456799999987642 12222222222234567777765443 2111 111247
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 269 (977)
+++.+++.++..+.+.+.+.... ..-.++....|++.++|.|-.+..+.
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~-~~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQEN-VKCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 89999999999999988764211 12235678899999999987654443
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.30 E-value=1e-05 Score=88.18 Aligned_cols=185 Identities=10% Similarity=0.046 Sum_probs=104.7
Q ss_pred CCCcccccchHHHHHHHHHHhhc----------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKD----------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDV 135 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~ 135 (977)
...+..++|.++.++++.+.+.. .....+.|.|+|+.|+|||++|+.+++. ... .+.++.+.-...
T Consensus 80 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~~~~l~~~ 156 (357)
T 3d8b_A 80 PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT---FFSISASSLTSK 156 (357)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEEGGGGCCS
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEehHHhhcc
Confidence 44556688888888888876642 1122568999999999999999999987 322 344554422110
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------ccccccCCC----CCCCC
Q 002037 136 KRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGIPYG----EEHKG 198 (977)
Q Consensus 136 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~----~~~~g 198 (977)
..+. .......+.......++.+|+||+++.... ...+...+. ....+
T Consensus 157 --------------~~g~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 157 --------------WVGE-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp --------------STTH-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred --------------ccch-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0000 111112222222235678999999964310 111111111 12234
Q ss_pred eEEEEecCChHH-Hhh--ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCC-ChhHHHHHHH
Q 002037 199 CKIILTSRFKEV-CDE--MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK-LPNAIVIIGT 270 (977)
Q Consensus 199 s~iivTtR~~~v-~~~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~ 270 (977)
..||.||..... ... -.....+.++..+.++..+++...+.... ..-.++....|++.+.| .+-.|..+..
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-CCLSEEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-CCccHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566667765432 111 12234678999999999999987764211 11224567888999988 4555555544
No 174
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.25 E-value=2.5e-05 Score=83.94 Aligned_cols=184 Identities=13% Similarity=0.123 Sum_probs=106.9
Q ss_pred CCCCCcccccchHHHHHHHHHHhh----------cCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCC
Q 002037 65 IPTPEFVPLKSALEVIKSVMKLLK----------DNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 133 (977)
Q Consensus 65 ~~~~~~~~~~gr~~~~~~l~~~l~----------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~ 133 (977)
.|...+..++|.++.++.+.+.+. ......+-|.|+|++|+|||++|+++++. ...| +.++.+
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~~~--- 85 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVSSS--- 85 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEEHH---
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEchH---
Confidence 344556678888888888887662 11122457999999999999999999988 4332 223221
Q ss_pred CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------cccccc---CCCCCCC
Q 002037 134 DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGI---PYGEEHK 197 (977)
Q Consensus 134 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~---~~~~~~~ 197 (977)
.+ .. ...+.. ......+.......++.+|+||+++.... ...+.. .+.....
T Consensus 86 ---~l----~~----~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 ---DL----VS----KWMGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp ---HH----HT----TTGGGH-HHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred ---HH----hh----cccchH-HHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 11 10 011111 12222333333345678999999985421 111111 1112334
Q ss_pred CeEEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCC-hhHHHHHH
Q 002037 198 GCKIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL-PNAIVIIG 269 (977)
Q Consensus 198 gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~ 269 (977)
+..||.||..... .+ .....+.++..+.++-.+++..++..... .........|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPC-VLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5667777776432 22 23357889999999999999998763221 11234567888888874 43444443
No 175
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.24 E-value=3.9e-05 Score=85.31 Aligned_cols=124 Identities=12% Similarity=0.254 Sum_probs=70.2
Q ss_pred CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCcc
Q 002037 438 QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELE 514 (977)
Q Consensus 438 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~ 514 (977)
+.+|.+|+.+.+.. .+..+....|.++.+|+.+++..+ +..++. .+..+..|+.+.+..+- .. ...+..+..+.
T Consensus 67 F~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~i~~~aF~~~~~~~ 143 (394)
T 4fs7_A 67 FQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KSIGVEAFKGCDFKE 143 (394)
T ss_dssp TTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CEECTTTTTTCCCSE
T ss_pred hhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-eeecceeeecccccc
Confidence 45677888888764 366677777888888888888654 555544 56677777766654431 11 22223332222
Q ss_pred EEEccCCCCcccC-ccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccC
Q 002037 515 VLILKGSRIVELP-NGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGN 568 (977)
Q Consensus 515 ~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~ 568 (977)
.... ..+..+. ..+.++.+|+.+.+..+ ...++.+.+..+.+|+.+.+..
T Consensus 144 ~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 144 ITIP--EGVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp EECC--TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccC--ccccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence 2211 1122222 23566677777777654 2445555566677777666544
No 176
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=3.8e-06 Score=96.62 Aligned_cols=195 Identities=12% Similarity=0.050 Sum_probs=107.7
Q ss_pred CCCcccccchHHHHHHHHHHhhcCC---------------CceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCC
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNS---------------ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ 131 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~---------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~ 131 (977)
+..+..++|+++.++++.+++.... ...+.+.|+|+.|+||||+|+.+++... + .++.++++.
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~-~-~~i~in~s~ 112 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG-Y-DILEQNASD 112 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT-C-EEEEECTTS
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC-C-CEEEEeCCC
Confidence 3456678999999999999886510 1246899999999999999999998731 1 234555555
Q ss_pred CCCHHHHHHHHHHHhhhccccchHHHHHHHHHHH-HHccceEEEEecCccccccc-----cccccCCCCCCCCeEEEEec
Q 002037 132 TPDVKRVQDEIARFLNTELEGDVEVLRAAFLSER-LKRQKRVLIILDDLWGKLDL-----AVVGIPYGEEHKGCKIILTS 205 (977)
Q Consensus 132 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~-l~~~~~~LlvlDdv~~~~~~-----~~l~~~~~~~~~gs~iivTt 205 (977)
......+ .............. .......+. ...+++.+||+|+++....- ..+...+ .. .+..||+++
T Consensus 113 ~~~~~~~-~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l-~~-~~~~iIli~ 186 (516)
T 1sxj_A 113 VRSKTLL-NAGVKNALDNMSVV---GYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC-RK-TSTPLILIC 186 (516)
T ss_dssp CCCHHHH-HHTGGGGTTBCCST---TTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH-HH-CSSCEEEEE
T ss_pred cchHHHH-HHHHHHHhccccHH---HHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH-Hh-cCCCEEEEE
Confidence 4443322 11111110000000 000000000 11357889999999865221 1221111 11 223355554
Q ss_pred CChH---HHhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCC-ChhHHHHHHH
Q 002037 206 RFKE---VCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK-LPNAIVIIGT 270 (977)
Q Consensus 206 R~~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPLai~~~~~ 270 (977)
.+.. +.........+.+++++.++..+++.+.+.... ..-.+++...|++.++| ++-|+..+..
T Consensus 187 ~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~-~~i~~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 187 NERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREK-FKLDPNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp SCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCCCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred cCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4332 222122235789999999999999887664111 01112457788999999 5555655543
No 177
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.20 E-value=3.1e-05 Score=86.10 Aligned_cols=187 Identities=17% Similarity=0.169 Sum_probs=115.2
Q ss_pred ccCccEEEeccCCCccCCC--CCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEe
Q 002037 419 LQNCEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLH 495 (977)
Q Consensus 419 ~~~~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 495 (977)
..+++.+.+. +.++.+.. +.+|.+|+.+.+..+ +..+....|.++..|+.+.+..+ +..+.. .+..+..+....
T Consensus 70 c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~ 146 (394)
T 4fs7_A 70 CRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITI 146 (394)
T ss_dssp CTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEEC
T ss_pred CCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccccc
Confidence 3467777776 34666554 578999999999754 77777888899999988777654 333333 455554443333
Q ss_pred cCCCCCCCCccccCCCCccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCcc
Q 002037 496 LENTHLNDASLIREFGELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWE 574 (977)
Q Consensus 496 L~~~~l~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~ 574 (977)
...........+..+.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ ...++...+..+..|+.+.+..+...
T Consensus 147 ~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~-- 221 (394)
T 4fs7_A 147 PEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYY-- 221 (394)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCE--
T ss_pred CccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceE--
Confidence 33322222456778899999999764 4556544 678889999998776 45667776888888888876543210
Q ss_pred ccccccCcCccccccccCCCCcEEEeeecCccccccCCCCCCCCcceEEE
Q 002037 575 VEETANGQNARFSEVASLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRV 624 (977)
Q Consensus 575 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 624 (977)
.-...-....|+.+.+.. ....+....+..+.+|+.+.+
T Consensus 222 ----------i~~~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~ 260 (394)
T 4fs7_A 222 ----------LGDFALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISI 260 (394)
T ss_dssp ----------ECTTTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEE
T ss_pred ----------eehhhcccCCCceEEECC-CceecccccccccccceeEEc
Confidence 001112234566666542 222233344445566666554
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.19 E-value=6.3e-06 Score=92.40 Aligned_cols=171 Identities=13% Similarity=0.207 Sum_probs=98.9
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCC--CEEEEEEeCCCCCHHHHHHHHHHHhhhccccchH
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVE 155 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f--~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 155 (977)
....+......... ...+.|+|++|+||||||+.+++. ...+ ..+++++.. .+..++...+....
T Consensus 116 a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~~~~~~~----- 183 (440)
T 2z4s_A 116 AYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVDSMKEGK----- 183 (440)
T ss_dssp HHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHHHHHccc-----
Confidence 34444444444332 568999999999999999999988 3332 234555433 23334443332210
Q ss_pred HHHHHHHHHHHHccceEEEEecCcccccc----ccccccCCCC-CCCCeEEEEecCCh---------HHHhhccCCceEE
Q 002037 156 VLRAAFLSERLKRQKRVLIILDDLWGKLD----LAVVGIPYGE-EHKGCKIILTSRFK---------EVCDEMESTNYVQ 221 (977)
Q Consensus 156 ~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~ 221 (977)
...+...+. .+.-+|++||++.... .+.+...+.. ...|..||+||.+. .+...+.....+.
T Consensus 184 ---~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~ 259 (440)
T 2z4s_A 184 ---LNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAK 259 (440)
T ss_dssp ---HHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCB
T ss_pred ---HHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEE
Confidence 112222222 2567999999976532 1222211110 13467788888763 2233344345789
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHH
Q 002037 222 VEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIV 266 (977)
Q Consensus 222 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~ 266 (977)
+++++.++..+++.+.+.... ..-.+++...|++.++|.+-.+.
T Consensus 260 l~~p~~e~r~~iL~~~~~~~~-~~i~~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 260 LEPPDEETRKSIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp CCCCCHHHHHHHHHHHHHHHT-CCCCTTHHHHHHHHCCSCHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHH
Confidence 999999999999988764100 01112456778888898875443
No 179
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.18 E-value=6e-05 Score=82.92 Aligned_cols=193 Identities=9% Similarity=0.105 Sum_probs=100.0
Q ss_pred cccccchHHHHHH---HHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEe----CCCCCHHHHHHH
Q 002037 70 FVPLKSALEVIKS---VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV----TQTPDVKRVQDE 141 (977)
Q Consensus 70 ~~~~~gr~~~~~~---l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~----~~~~~~~~~~~~ 141 (977)
+..++|++..++. +.+.+..+....+.+.|+|++|+|||++|+.+++. ..... .+.+.. +..........+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 121 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP-FTAIAGSEIFSLEMSKTEALTQ 121 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC-EEEEEGGGGSCSSSCHHHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC-cccccchhhhhcccchhHHHHH
Confidence 5567788777655 55555555423468999999999999999999998 32211 122221 112233333333
Q ss_pred HHHHh-hhc---------------------------ccc---chHHHH---HHHHHH-HHHccc----eEEEEecCcccc
Q 002037 142 IARFL-NTE---------------------------LEG---DVEVLR---AAFLSE-RLKRQK----RVLIILDDLWGK 182 (977)
Q Consensus 142 i~~~l-~~~---------------------------~~~---~~~~~~---~~~l~~-~l~~~~----~~LlvlDdv~~~ 182 (977)
..+.. +.. ..+ ...... ...... ....++ +.+|++|+++..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l 201 (368)
T 3uk6_A 122 AFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHML 201 (368)
T ss_dssp HHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGS
T ss_pred HHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcccc
Confidence 32221 000 000 000111 111111 112233 349999999865
Q ss_pred c--cccccccCCCCCCCCeEEEEecCC-----------------hHHHhhccCCceEEccCCCHHHHHHHHHHhcCCCCC
Q 002037 183 L--DLAVVGIPYGEEHKGCKIILTSRF-----------------KEVCDEMESTNYVQVEELTDEDRLILFKKKAGLPEG 243 (977)
Q Consensus 183 ~--~~~~l~~~~~~~~~gs~iivTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~ 243 (977)
. ....+...+...... .++++|.. +.+...+ ..+.+++++.++..+++.+++....
T Consensus 202 ~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~~~~~- 276 (368)
T 3uk6_A 202 DIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRCEEED- 276 (368)
T ss_dssp BHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHHHHTT-
T ss_pred ChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHHHHcC-
Confidence 2 122222222222222 34434321 1222222 3579999999999999998764211
Q ss_pred ChhhHHHHHHHHHHhC-CChhHHHHH
Q 002037 244 TKAFDRAAEEVVRQCG-KLPNAIVII 268 (977)
Q Consensus 244 ~~~~~~~~~~i~~~~~-glPLai~~~ 268 (977)
..-.++....|++.+. |.|-.+..+
T Consensus 277 ~~~~~~~l~~l~~~~~~G~~r~~~~l 302 (368)
T 3uk6_A 277 VEMSEDAYTVLTRIGLETSLRYAIQL 302 (368)
T ss_dssp CCBCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCHHHHHHH
Confidence 2233456788888887 777544433
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.17 E-value=2.2e-05 Score=85.26 Aligned_cols=174 Identities=13% Similarity=0.110 Sum_probs=102.7
Q ss_pred CCcccccchHHHHHHHHHHhhcC---CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 68 PEFVPLKSALEVIKSVMKLLKDN---SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
..+..++|++..++++..++... ......|.|+|+.|+|||++|+.+++. ...| +.++.+.......+
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~~~~~~~~~~~----- 97 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI---KTTAAPMIEKSGDL----- 97 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEEGGGCCSHHHH-----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEecchhccchhHH-----
Confidence 35667889999988888877542 223567899999999999999999887 4333 23333222111111
Q ss_pred HHhhhccccchHHHHHHHHHHHHH-ccceEEEEecCccccc--cccccccCC------------------CCCCCCeEEE
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLK-RQKRVLIILDDLWGKL--DLAVVGIPY------------------GEEHKGCKII 202 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~-~~~~~LlvlDdv~~~~--~~~~l~~~~------------------~~~~~gs~ii 202 (977)
...+. ..+..+|+||+++... ....+...+ ....++.++|
T Consensus 98 -------------------~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 98 -------------------AAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------------HHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------------HHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11111 2456788899987641 111111000 0011234566
Q ss_pred EecCChHH-Hhh-c-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHHH
Q 002037 203 LTSRFKEV-CDE-M-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 203 vTtR~~~v-~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~~ 269 (977)
.||..... ... . .....+.+++++.++..+++.+.+.... ..-..+....+++.+.|.|-.+..+.
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 66654322 111 1 1235799999999999999988764211 22335667888889999985554433
No 181
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.17 E-value=6.2e-05 Score=80.62 Aligned_cols=185 Identities=14% Similarity=0.142 Sum_probs=102.5
Q ss_pred CCCCcccccchHHHHHHHHHHhhc---------C-CCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCH
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKD---------N-SISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDV 135 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~---------~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~ 135 (977)
|...+..+.|.++.++.+.+.+.. + ....+-|.|+|+.|+|||++|+++++.... ...+.++.+.-.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~-~~~~~i~~~~l~~- 84 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN-STFFSISSSDLVS- 84 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS-CEEEEEECCSSCC-
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC-CcEEEEEhHHHHh-
Confidence 334455667777777666655421 1 112468999999999999999999987311 1223344332111
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------cccccc---CCCCCCCCe
Q 002037 136 KRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGI---PYGEEHKGC 199 (977)
Q Consensus 136 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~---~~~~~~~gs 199 (977)
...+.. ......+.......++.+|+||+++.... ...+.. .+.....+.
T Consensus 85 -------------~~~g~~-~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v 150 (322)
T 1xwi_A 85 -------------KWLGES-EKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 150 (322)
T ss_dssp -------------SSCCSC-HHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTE
T ss_pred -------------hhhhHH-HHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCE
Confidence 000111 11122222223335788999999976411 001111 111123455
Q ss_pred EEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh-hHHHHHH
Q 002037 200 KIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP-NAIVIIG 269 (977)
Q Consensus 200 ~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP-Lai~~~~ 269 (977)
.||.||...+. .+ .....+.++..+.++..+++..++..... .-.+.....|++.+.|.. -.|..+.
T Consensus 151 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 151 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQN-SLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCB-CCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66667754432 22 23357889999999999999887753221 112345678888888874 3354444
No 182
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=4.6e-06 Score=91.40 Aligned_cols=194 Identities=10% Similarity=0.104 Sum_probs=103.0
Q ss_pred CCCcccccchHHHHHHHHHHh-hcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC-----CCE---------------
Q 002037 67 TPEFVPLKSALEVIKSVMKLL-KDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDK--------------- 123 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l-~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~-----f~~--------------- 123 (977)
+..+..++|+++.++.+.+++ ..+. ...+.|+|+.|+||||+|+.+++. ... +++
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~--~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRD--LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTC--CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCC--CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 344567889999999888887 5444 333899999999999999999885 111 111
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCC
Q 002037 124 -----VIFVRVTQTP-DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEE 195 (977)
Q Consensus 124 -----~~wv~~~~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~ 195 (977)
.+.+..+... ......+++...+.....-... . .+. .+ .+++-++|+|++.... ....+...+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---~-~ls-~l-~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQ---D-SKD-GL-AHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcccccc---c-ccc-cc-CCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 1111111100 0000112222221110000000 0 000 01 1367799999997642 112222222122
Q ss_pred CCCeEEEEecCChH-HHhhc-cCCceEEccCCCHHHHHHHHHHhcCCCCCChhh-HHHHHHHHHHhCCChhHHHHHH
Q 002037 196 HKGCKIILTSRFKE-VCDEM-ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAF-DRAAEEVVRQCGKLPNAIVIIG 269 (977)
Q Consensus 196 ~~gs~iivTtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~-~~~~~~i~~~~~glPLai~~~~ 269 (977)
..+..+|++|.+.. +...+ .....+++++++.++..+.+.+.+.... ..-. ++....|++.++|.+-.+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-IQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 34677777776542 21111 2225799999999999999988764111 1112 3567889999999886554443
No 183
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.15 E-value=3.1e-05 Score=83.56 Aligned_cols=167 Identities=11% Similarity=0.059 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC---------------------CCEEEEEEeC--
Q 002037 76 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP---------------------FDKVIFVRVT-- 130 (977)
Q Consensus 76 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~---------------------f~~~~wv~~~-- 130 (977)
.++..+.+...+..+. -.+.+.++|+.|+|||++|+.+++. ... +| ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~ 84 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKG 84 (334)
T ss_dssp GHHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTT
T ss_pred hHHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEecccc
Confidence 3556667777776654 2457999999999999999999987 211 22 2233222
Q ss_pred -CCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCC
Q 002037 131 -QTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRF 207 (977)
Q Consensus 131 -~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~ 207 (977)
....+..+ +++.+.+.... ..+++-++|+|+++... ....+...+.....+..+|++|.+
T Consensus 85 ~~~~~i~~i-r~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~ 147 (334)
T 1a5t_A 85 KNTLGVDAV-REVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATRE 147 (334)
T ss_dssp CSSBCHHHH-HHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESC
T ss_pred CCCCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCC
Confidence 11122211 12222221100 02567899999998652 223333333333456777777766
Q ss_pred hH-HHhh-ccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHH
Q 002037 208 KE-VCDE-MESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVI 267 (977)
Q Consensus 208 ~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~ 267 (977)
.+ +... ......+++++++.++..+.+.+... -.++.+..+++.++|.|..+..
T Consensus 148 ~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 148 PERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT------MSQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHTTTCHHHHHH
T ss_pred hHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHH
Confidence 53 3221 12235799999999999999988751 1234567899999999965543
No 184
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.14 E-value=1.8e-05 Score=85.93 Aligned_cols=180 Identities=13% Similarity=0.140 Sum_probs=103.9
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCCCCHHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~~~~~~~~~~i~ 143 (977)
+..+..++|.++.++.+...+..+. +..+.++|+.|+||||+|+.+++. ...+. .+.-++.+.......+.. +.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~--~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~-~i 97 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGK--LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRN-QI 97 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHT-HH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC--CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHH-HH
Confidence 4456678899999999888888766 434899999999999999999987 32222 223333333222222211 11
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCChH-HHhh-ccCCce
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFKE-VCDE-MESTNY 219 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~-~~~~~~ 219 (977)
..+..... .. .+++-++|+|+++... ....+...+.......++|++|.... +... ......
T Consensus 98 ~~~~~~~~-------------~~-~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~ 163 (340)
T 1sxj_C 98 KDFASTRQ-------------IF-SKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 163 (340)
T ss_dssp HHHHHBCC-------------SS-SCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHhhcc-------------cC-CCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhcee
Confidence 11100000 00 1347789999997542 22222221212234566777765442 1111 111247
Q ss_pred EEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 220 VQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 220 ~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
+++.+++.++..+.+.+.+... ...-.++..+.+++.++|-+--
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~-~~~i~~~~~~~i~~~s~G~~r~ 207 (340)
T 1sxj_C 164 FRFQPLPQEAIERRIANVLVHE-KLKLSPNAEKALIELSNGDMRR 207 (340)
T ss_dssp EECCCCCHHHHHHHHHHHHHTT-TCCBCHHHHHHHHHHHTTCHHH
T ss_pred EeccCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHH
Confidence 8999999999999888766311 1112245678888999997753
No 185
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.12 E-value=5.4e-05 Score=83.73 Aligned_cols=183 Identities=12% Similarity=0.104 Sum_probs=102.6
Q ss_pred CCCCcccccchHHHHHHHHHHhhcC----------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCC
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKDN----------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 134 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~ 134 (977)
+...+..++|.+..++.+...+... ....+-|.|+|+.|+|||++|+.+++. ... .+.++.+.-..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~---~~~v~~~~l~~ 186 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT---FFNISAASLTS 186 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEECSCCC--
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc---EEEeeHHHhhc
Confidence 3455667889999998888876220 112468999999999999999999887 322 23343333211
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------ccccccCC---C-CCCC
Q 002037 135 VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGIPY---G-EEHK 197 (977)
Q Consensus 135 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~---~-~~~~ 197 (977)
... + .. ......+........+.+|+||+++.... ...+...+ . ....
T Consensus 187 --~~~-------g-----~~-~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 251 (389)
T 3vfd_A 187 --KYV-------G-----EG-EKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDD 251 (389)
T ss_dssp -------------------C-HHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----
T ss_pred --ccc-------c-----hH-HHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCC
Confidence 000 0 00 01112222222234568999999975410 00111000 0 1123
Q ss_pred CeEEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh-HHHHHH
Q 002037 198 GCKIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVIIG 269 (977)
Q Consensus 198 gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 269 (977)
...||.||...+- .. .....+.++..+.++..+++...+.... ..-.++....|++.+.|..- +|..+.
T Consensus 252 ~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 252 RVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQG-SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSC-CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4556667765332 22 2224688999999999999988875322 12233467788999988654 555443
No 186
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.10 E-value=1.6e-05 Score=85.69 Aligned_cols=168 Identities=18% Similarity=0.143 Sum_probs=93.9
Q ss_pred HHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchH
Q 002037 77 LEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVE 155 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~ 155 (977)
......+..+..........+.|+|+.|+||||||+.+++. ...-..++++++. .+...+...+...
T Consensus 20 ~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~------~~~~~~~~~~~~~------ 87 (324)
T 1l8q_A 20 RLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD------DFAQAMVEHLKKG------ 87 (324)
T ss_dssp HHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH------HHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH------HHHHHHHHHHHcC------
Confidence 33444555555443323567999999999999999999988 2212234555432 2333333332211
Q ss_pred HHHHHHHHHHHHccceEEEEecCcccccc----ccccccCCC-CCCCCeEEEEecCCh---------HHHhhccCCceEE
Q 002037 156 VLRAAFLSERLKRQKRVLIILDDLWGKLD----LAVVGIPYG-EEHKGCKIILTSRFK---------EVCDEMESTNYVQ 221 (977)
Q Consensus 156 ~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----~~~l~~~~~-~~~~gs~iivTtR~~---------~v~~~~~~~~~~~ 221 (977)
....+.... .+.-+|++||++.... .+.+...+. ....|..||+||... .+...+.....++
T Consensus 88 --~~~~~~~~~--~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~ 163 (324)
T 1l8q_A 88 --TINEFRNMY--KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVE 163 (324)
T ss_dssp --CHHHHHHHH--HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEE
T ss_pred --cHHHHHHHh--cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEE
Confidence 011122222 2467999999976531 111211111 012355788877533 2233333335789
Q ss_pred ccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh
Q 002037 222 VEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN 263 (977)
Q Consensus 222 l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL 263 (977)
+++ +.++..+++.+.+.... ..-.+++...|++.+ |..-
T Consensus 164 l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 164 IEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp CCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHC-SSHH
T ss_pred eCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhC-CCHH
Confidence 999 99999999988764111 112245677788888 7653
No 187
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.10 E-value=0.00012 Score=77.74 Aligned_cols=183 Identities=11% Similarity=0.090 Sum_probs=103.2
Q ss_pred CCCCcccccchHHHHHHHHHHhhcC----------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCC
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKDN----------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 134 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~ 134 (977)
+...+..++|.++.++.+.+.+... ....+.+.|+|++|+||||+|+.+++. ... .+.++.+.-..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~---~~~i~~~~l~~ 92 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT---FLNISAASLTS 92 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE---EEEEESTTTSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEeeHHHHhh
Confidence 3445567888888888888766321 012468999999999999999999987 322 23344433211
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccccc-------------cccc---cCCCC--CC
Q 002037 135 VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDL-------------AVVG---IPYGE--EH 196 (977)
Q Consensus 135 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~-------------~~l~---~~~~~--~~ 196 (977)
. ..+.. ......+.......++.+|++|+++....- ..+. ..+.. .+
T Consensus 93 ~--------------~~~~~-~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 K--------------YVGDG-EKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp S--------------SCSCH-HHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred c--------------ccchH-HHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 00011 111112222222356789999999754110 0011 01111 12
Q ss_pred CCeEEEEecCChH-----HHhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChh-HHHHHH
Q 002037 197 KGCKIILTSRFKE-----VCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPN-AIVIIG 269 (977)
Q Consensus 197 ~gs~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPL-ai~~~~ 269 (977)
.+..||.||...+ +... ....+.++..+.++..+++...+.... ..-..+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQG-SPLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGS-CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456777777643 2222 235678888888888888887664211 11123456788889999875 454443
No 188
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.08 E-value=1.6e-05 Score=85.71 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=101.6
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHh
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFL 146 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l 146 (977)
+..+..++|+++.++.+.+++..+. ...++.+.|+.|+|||++|+.+++... ..++.++.+.. ....+ +.+....
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~--~~~~~i~~~~~-~~~~i-~~~~~~~ 96 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN--ADMMFVNGSDC-KIDFV-RGPLTNF 96 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT--EEEEEEETTTC-CHHHH-HTHHHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC--CCEEEEccccc-CHHHH-HHHHHHH
Confidence 3456678899999999999888654 235788889999999999999998721 23445554442 22222 2111111
Q ss_pred hhccccchHHHHHHHHHHHHHccceEEEEecCccccc---cccccccCCCCCCCCeEEEEecCChHH-----HhhccCCc
Q 002037 147 NTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL---DLAVVGIPYGEEHKGCKIILTSRFKEV-----CDEMESTN 218 (977)
Q Consensus 147 ~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~---~~~~l~~~~~~~~~gs~iivTtR~~~v-----~~~~~~~~ 218 (977)
..... ..+++-++|+||++... ....+...+.....+.+||+||....- ...+ .
T Consensus 97 ~~~~~---------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~---~ 158 (324)
T 3u61_B 97 ASAAS---------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC---R 158 (324)
T ss_dssp HHBCC---------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS---E
T ss_pred Hhhcc---------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC---c
Confidence 00000 01478899999998653 222222222112245678888876531 2221 4
Q ss_pred eEEccCCCHHHHHHHHHH-------hcCCCCCChhhH-HHHHHHHHHhCCChhHH
Q 002037 219 YVQVEELTDEDRLILFKK-------KAGLPEGTKAFD-RAAEEVVRQCGKLPNAI 265 (977)
Q Consensus 219 ~~~l~~L~~~~~~~lf~~-------~~~~~~~~~~~~-~~~~~i~~~~~glPLai 265 (977)
.+++++++.++-.+++.. .+... ...-.+ +....|++.++|.+-.+
T Consensus 159 ~i~~~~~~~~e~~~il~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 159 VITFGQPTDEDKIEMMKQMIRRLTEICKHE-GIAIADMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHHHHHHHH-TCCBSCHHHHHHHHHHTCSCTTHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHhCCCCHHHH
Confidence 789999998885444322 22110 111112 66778888888876543
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.08 E-value=1.4e-06 Score=82.75 Aligned_cols=90 Identities=10% Similarity=0.132 Sum_probs=68.6
Q ss_pred CCccEEEeccccCcceecccccccccccccEEEEecccccceeeecccccccccccc----cccccceeecccccccccc
Q 002037 834 PNLKKLLIGKCNKMKRVLSLTNAHNLKQLEELTVASCNHMERIITVSDEEKAAENKN----VLPKLKILALEDLPELDSV 909 (977)
Q Consensus 834 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~----~~~~L~~L~l~~c~~L~~l 909 (977)
.+|++|++++|. +++.. ...+..+++|++|++++|..+++-.- ..+. ..++|++|+|++|++++.-
T Consensus 61 ~~L~~LDLs~~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL--------~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCL--------ERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp CCEEEEEEESCC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHH--------HHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred ceEeEEeCcCCC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHH--------HHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 579999999998 76643 33457899999999999998865310 1122 2468999999999999875
Q ss_pred ccCccccccCCCccEEEeccCCCCCC
Q 002037 910 YNGEIAALRWPSLEELKVWDCPKLMK 935 (977)
Q Consensus 910 ~~~~~~~~~~~sL~~L~i~~C~~L~~ 935 (977)
....+. .+++|++|++++||+++.
T Consensus 131 Gl~~L~--~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 131 GIIALH--HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHGG--GCTTCCEEEEESCTTCCC
T ss_pred HHHHHh--cCCCCCEEECCCCCCCCc
Confidence 443343 479999999999999886
No 190
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.08 E-value=9.3e-06 Score=87.03 Aligned_cols=147 Identities=13% Similarity=0.137 Sum_probs=80.6
Q ss_pred ccchHHHHHHHHHHhhc-------------CCCceeEEEEEcCCCChHHHHHHHHHhh--cC-CCC--EEEEEEeCCCCC
Q 002037 73 LKSALEVIKSVMKLLKD-------------NSISINIIGVYGSGGIGKTTLMKQVMKQ--EI-PFD--KVIFVRVTQTPD 134 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~-------------~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~-~f~--~~~wv~~~~~~~ 134 (977)
++|.++.++.+.+.+.. .......+.|+|++|+|||++|+.+++. .. ... ..+.++.+.-
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l-- 110 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL-- 110 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT--
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh--
Confidence 55666666666554421 1222557999999999999999998887 22 111 2333332211
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccc-----------ccccccccCCCCCCCCeEEEE
Q 002037 135 VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGK-----------LDLAVVGIPYGEEHKGCKIIL 203 (977)
Q Consensus 135 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~-----------~~~~~l~~~~~~~~~gs~iiv 203 (977)
.....+..... +...+...+.-+|++|+++.. .....+...+.....+..||.
T Consensus 111 ------------~~~~~g~~~~~----~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 111 ------------VGQYIGHTAPK----TKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ------------CCSSTTCHHHH----HHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ------------hhhcccccHHH----HHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 00011111111 111221123459999999843 111222222222344667888
Q ss_pred ecCChHH----------HhhccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 204 TSRFKEV----------CDEMESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 204 TtR~~~v----------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
||..... ...+ ...+.+++++.++-.+++..++.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHHH
Confidence 8865432 2222 25789999999999999987764
No 191
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.05 E-value=1.6e-05 Score=77.78 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=40.5
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+..++||+++++.+.+.+.... .+.+.|+|+.|+|||++|+.+++.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~--~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRT--KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccchhhcchHHHHHHHHHHhCCC--CCceEEECCCCCCHHHHHHHHHHH
Confidence 34568899999999999987754 567799999999999999999987
No 192
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=4.1e-06 Score=91.02 Aligned_cols=137 Identities=20% Similarity=0.220 Sum_probs=79.7
Q ss_pred hHHhcCCCccEEEccCCcCCCCCCCcccCCCCCeEecCCCCCCC--Ccccc--CCCCccEEEccCC--------CCcccC
Q 002037 460 AFFEHTREIKNLDLSSTNISSLAPSLPCLEKLRSLHLENTHLND--ASLIR--EFGELEVLILKGS--------RIVELP 527 (977)
Q Consensus 460 ~~~~~l~~Lr~L~l~~~~~~~lp~~~~~l~~L~~L~L~~~~l~~--~~~i~--~l~~L~~L~l~~~--------~l~~lp 527 (977)
.++..+++|+.|+++++.-..++. + .+++|++|++..|.+.. ...++ .+++|++|+|+.+ .+..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 456677888888888774234444 3 37788888888877654 33343 6788888887531 122222
Q ss_pred ccc--cCCCCCCEEEcCCCCCCCccChhhh--hcCccccEEEccCCcCCccccccccCcCccccccccCCCCcEEEeeec
Q 002037 528 NGI--GTVSNLKLLDLSNNLFLQVIPPNVI--SKLSQLEELYVGNSFGDWEVEETANGQNARFSEVASLTRLTVLYIHVS 603 (977)
Q Consensus 528 ~~i--~~l~~L~~L~l~~~~~~~~~p~~~i--~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 603 (977)
..+ +.+++|++|++++|.+....+..+. ..+++|++|+++.|..... ........+..+++|+.|+++.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~------G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE------GARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH------HHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH------HHHHHHhhcccCCcceEEECCCC
Confidence 222 3577888888888765433322211 2467888888866532110 00111233456677777777655
Q ss_pred C
Q 002037 604 N 604 (977)
Q Consensus 604 ~ 604 (977)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 4
No 193
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=1.7e-06 Score=82.16 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=53.5
Q ss_pred cCCCccEEEeccccCcceeccccccc---ccccccEEEEecccccceeeecccccccccccccccccceeeccccccccc
Q 002037 832 FFPNLKKLLIGKCNKMKRVLSLTNAH---NLKQLEELTVASCNHMERIITVSDEEKAAENKNVLPKLKILALEDLPELDS 908 (977)
Q Consensus 832 ~~~~L~~L~l~~c~~l~~~~~~~~~~---~l~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~ 908 (977)
.+++|++|+|++|..+++........ ..++|++|+|++|+++++-. ...+..+++|++|+|++|++++.
T Consensus 83 ~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G--------l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 83 GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG--------IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH--------HHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH--------HHHHhcCCCCCEEECCCCCCCCc
Confidence 48999999999999998854322222 14689999999999987631 12345689999999999999886
Q ss_pred c
Q 002037 909 V 909 (977)
Q Consensus 909 l 909 (977)
.
T Consensus 155 ~ 155 (176)
T 3e4g_A 155 K 155 (176)
T ss_dssp H
T ss_pred h
Confidence 4
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.03 E-value=6.5e-05 Score=81.69 Aligned_cols=182 Identities=13% Similarity=0.121 Sum_probs=101.0
Q ss_pred CCCcccccchHHHHHHHHHHhhc----------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKD----------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDV 135 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~ 135 (977)
...+..+.|.++.++.+.+.+.. .....+-|.|+|+.|+|||++|+.+++. ...| +.++.+
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~~~----- 118 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVSSS----- 118 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEEHH-----
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEeeHH-----
Confidence 34455677777777777766521 1112346889999999999999999998 4332 223221
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------ccccccC---CCCCCCCe
Q 002037 136 KRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGIP---YGEEHKGC 199 (977)
Q Consensus 136 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~---~~~~~~gs 199 (977)
.+.. ...+.. ......+.......++.+|+||+++.... ...+... +.....+.
T Consensus 119 -~l~~--------~~~g~~-~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 188 (355)
T 2qp9_X 119 -DLVS--------KWMGES-EKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 188 (355)
T ss_dssp -HHHS--------CC---C-HHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCE
T ss_pred -HHhh--------hhcchH-HHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCe
Confidence 1110 000111 11122222233335789999999986421 1111111 11123456
Q ss_pred EEEEecCChH-----HHhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCC-hhHHHHHH
Q 002037 200 KIILTSRFKE-----VCDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL-PNAIVIIG 269 (977)
Q Consensus 200 ~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~ 269 (977)
.||.||...+ +.+ .....+.++..+.++-.+++..++..... .........|++.+.|. +-.|..+.
T Consensus 189 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 6776776543 222 33357889999999999999988763221 11234567888888884 43444443
No 195
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.99 E-value=0.00013 Score=81.90 Aligned_cols=185 Identities=15% Similarity=0.168 Sum_probs=102.8
Q ss_pred CCCCcccccchHHHHHHHHHHhhc----------CCCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCH
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKD----------NSISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDV 135 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~ 135 (977)
|...+..+.|.++.++.+.+.+.. .....+-|.|+|++|+|||++|+.+++.... .-++.++...-.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~l~ 205 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLV 205 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHHHH
Confidence 344556678888888888776521 0112468999999999999999999987311 123333322110
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------ccccccCCCC---CCCCe
Q 002037 136 KRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGIPYGE---EHKGC 199 (977)
Q Consensus 136 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~~---~~~gs 199 (977)
.. ..+.. .. ....+.......++.+|+||+++.... ...+...+.. ...+.
T Consensus 206 ----~~---~~g~~-~~-----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v 272 (444)
T 2zan_A 206 ----SK---WLGES-EK-----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGI 272 (444)
T ss_dssp -------------C-CC-----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSC
T ss_pred ----hh---hcchH-HH-----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCE
Confidence 00 01100 00 111222222235778999999975410 0111111211 23456
Q ss_pred EEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCC-hhHHHHHH
Q 002037 200 KIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL-PNAIVIIG 269 (977)
Q Consensus 200 ~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~~ 269 (977)
.||.||..... .+ .....+.++..+.++..++|..++..... .-.......|++.+.|. +-.|..+.
T Consensus 273 ~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 273 LVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQN-SLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCE-ECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67777765532 22 23357888889999999999888753221 11234567888888885 43444443
No 196
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.91 E-value=0.00028 Score=76.20 Aligned_cols=175 Identities=14% Similarity=0.147 Sum_probs=98.2
Q ss_pred CCcccccchHHHHHHHHHHhh----c-------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCH
Q 002037 68 PEFVPLKSALEVIKSVMKLLK----D-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDV 135 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~----~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~ 135 (977)
..+..+.|-++.++++.+.+. . +-...+-|.++|++|+|||.+|+++++. ...| +.++.+.-.+
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVSGAELVQ- 220 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEEGGGGSC-
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEEhHHhhc-
Confidence 344456666666666655432 1 1123567899999999999999999998 5443 3343332111
Q ss_pred HHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCC--CCCC
Q 002037 136 KRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EEHK 197 (977)
Q Consensus 136 ~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~ 197 (977)
...+.+ ......+....+...+++|++|+++.... ...+...+. ....
T Consensus 221 -------------k~vGes-e~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 -------------KYIGEG-SRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp -------------SSTTHH-HHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred -------------cccchH-HHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 000111 11122222333346789999999875310 001111111 2234
Q ss_pred CeEEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 198 GCKIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 198 gs~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
+-.||.||...+. .+.-.-+..+.++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 5567778766544 2222345789999999999999998877532211111 1456777887754
No 197
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.86 E-value=0.00014 Score=77.16 Aligned_cols=179 Identities=13% Similarity=0.190 Sum_probs=97.3
Q ss_pred CCCCcccccchHHHHHHHHHHhhc-----------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCC
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLKD-----------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 133 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~ 133 (977)
|...+..+.|.++.++++.+.+.. +-...+.|.|+|+.|+|||++|+.+++. ...| +.+ +
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v--~--- 81 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISI--K--- 81 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEE--C---
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEE--E---
Confidence 344455677777777777665532 1122468999999999999999999988 3222 222 2
Q ss_pred CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCC--CC
Q 002037 134 DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EE 195 (977)
Q Consensus 134 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~ 195 (977)
...+.... .+.. . .....+.+......+.++++|+++.... ...+...+. ..
T Consensus 82 -~~~l~~~~---~g~~-~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 151 (301)
T 3cf0_A 82 -GPELLTMW---FGES-E-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST 151 (301)
T ss_dssp -HHHHHHHH---HTTC-T-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT
T ss_pred -hHHHHhhh---cCch-H-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC
Confidence 12222111 1111 0 0112222222235679999999974210 011111111 12
Q ss_pred CCCeEEEEecCChHHH-hh-c---cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhH
Q 002037 196 HKGCKIILTSRFKEVC-DE-M---ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNA 264 (977)
Q Consensus 196 ~~gs~iivTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLa 264 (977)
..+..||.||...+.. .. . .-...+.++..+.++-.+++...+.......+. -...+++.+.|.|-+
T Consensus 152 ~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 152 KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 3456788888765432 11 1 223578999999999999998877522111111 123555667776643
No 198
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.83 E-value=6.4e-05 Score=85.02 Aligned_cols=147 Identities=14% Similarity=0.216 Sum_probs=81.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCC------C-EEEEEEeCCCCCHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF------D-KVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f------~-~~~wv~~~~~~~~~~~~~ 140 (977)
.+.+++||+++++.++..+.... ..-+.|+|++|+|||++|+.+++. ...+ + .++.++++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~--------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT--------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc---------
Confidence 45578999999999999987654 446689999999999999999988 2211 1 122333330
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHh-------h
Q 002037 141 EIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCD-------E 213 (977)
Q Consensus 141 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~-------~ 213 (977)
...+ ... .....+.......++.++++| ........+...+ ..+ .-++|.+|....... .
T Consensus 247 ---~~~g-~~e-----~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L-~~g-~v~vI~at~~~e~~~~~~~~~al 313 (468)
T 3pxg_A 247 ---KYRG-EFE-----DRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL-ARG-ELQCIGATTLDEYRKYIEKDAAL 313 (468)
T ss_dssp ----------C-----TTHHHHHHHHHTCCCCEEEEC--C--------CCCT-TSS-SCEEEEECCTTTTHHHHTTCSHH
T ss_pred ---cccc-hHH-----HHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh-cCC-CEEEEecCCHHHHHHHhhcCHHH
Confidence 0000 000 111222233334567899999 2221112222222 222 345555555443110 0
Q ss_pred ccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 214 MESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 214 ~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
...-..+.+++.+.++..+++...+.
T Consensus 314 ~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11113689999999999999997764
No 199
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.81 E-value=5.8e-05 Score=79.73 Aligned_cols=142 Identities=15% Similarity=0.091 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh----c-CCCCEEEEEEeCC-CCCHHHHHHHHHHHhhhc
Q 002037 76 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ----E-IPFDKVIFVRVTQ-TPDVKRVQDEIARFLNTE 149 (977)
Q Consensus 76 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~----~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~l~~~ 149 (977)
.++.++.+.+.+..+. .+.+.++|+.|+||||+|+.+++. . .+.+ ..+++.++ ...+..+ +++.+.+...
T Consensus 2 ~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~ 77 (305)
T 2gno_A 2 AKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYS 77 (305)
T ss_dssp --CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSC
T ss_pred hHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhc
Confidence 4455667777777666 679999999999999999999875 1 2333 35555443 3333333 3344333211
Q ss_pred cccchHHHHHHHHHHHHHccceEEEEecCccccc--cccccccCCCCCCCCeEEEEecCCh-HHHhhccCCceEEccCCC
Q 002037 150 LEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGIPYGEEHKGCKIILTSRFK-EVCDEMESTNYVQVEELT 226 (977)
Q Consensus 150 ~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~~l~~L~ 226 (977)
.. .+++-++|+|+++... ...++...+-...+.+.+|++|.+. .+...+... .+++++++
T Consensus 78 p~----------------~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~ 140 (305)
T 2gno_A 78 PE----------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNV 140 (305)
T ss_dssp CS----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCC
T ss_pred cc----------------cCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCC
Confidence 10 2567889999998652 2333433333334567777766544 344444444 89999999
Q ss_pred HHHHHHHHHHhc
Q 002037 227 DEDRLILFKKKA 238 (977)
Q Consensus 227 ~~~~~~lf~~~~ 238 (977)
.++..+.+.+.+
T Consensus 141 ~~~i~~~L~~~~ 152 (305)
T 2gno_A 141 PKEFRDLVKEKI 152 (305)
T ss_dssp CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 200
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.81 E-value=4.8e-05 Score=75.57 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=38.4
Q ss_pred chHHHHHHHHHHhhcCCCc--eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEe
Q 002037 75 SALEVIKSVMKLLKDNSIS--INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 129 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~~--~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~ 129 (977)
++.+.++.+.+++...... .+.+.|+|++|+|||+||+.+++. ......++|+++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 33 GRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV 90 (202)
T ss_dssp HHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred hHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEh
Confidence 3445566666666554211 268999999999999999999998 444445666654
No 201
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.79 E-value=7.4e-06 Score=76.45 Aligned_cols=46 Identities=22% Similarity=0.198 Sum_probs=33.4
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++|+...+.++.+.+..-...-.-|.|+|..|+|||++|+.+++.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 3567777777777766432111345789999999999999999987
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.79 E-value=3.6e-05 Score=94.28 Aligned_cols=174 Identities=16% Similarity=0.223 Sum_probs=90.5
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC------CCEEEEEEeCCCCCHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP------FDKVIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~------f~~~~wv~~~~~~~~~~~~~ 140 (977)
.+.+++||++++.++++.+.... ..-+.++|.+|+||||+|+.+++. ... -..+++++++.-..
T Consensus 168 ~ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------ 239 (854)
T 1qvr_A 168 KLDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------ 239 (854)
T ss_dssp CSCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------
T ss_pred CCcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc------
Confidence 45568999999999999987755 456789999999999999999987 211 12344444322110
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHHc-cceEEEEecCcccccc-------ccc--cccCCCCCCCCeEEEEecCChHH
Q 002037 141 EIARFLNTELEGDVEVLRAAFLSERLKR-QKRVLIILDDLWGKLD-------LAV--VGIPYGEEHKGCKIILTSRFKEV 210 (977)
Q Consensus 141 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~-~~~~LlvlDdv~~~~~-------~~~--l~~~~~~~~~gs~iivTtR~~~v 210 (977)
+....+. .......+...... +++.+|++|+++.... ++. +..+.... .+-.+|.+|.....
T Consensus 240 ------g~~~~g~-~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-~~i~~I~at~~~~~ 311 (854)
T 1qvr_A 240 ------GAKYRGE-FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-GELRLIGATTLDEY 311 (854)
T ss_dssp ------------C-HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT-TCCCEEEEECHHHH
T ss_pred ------cCccchH-HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-CCeEEEEecCchHH
Confidence 0000011 11122223333332 4689999999976420 111 11111111 23345555544332
Q ss_pred H-----hhc-cCCceEEccCCCHHHHHHHHHHhcC---CCCCChhhHHHHHHHHHHh
Q 002037 211 C-----DEM-ESTNYVQVEELTDEDRLILFKKKAG---LPEGTKAFDRAAEEVVRQC 258 (977)
Q Consensus 211 ~-----~~~-~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~i~~~~ 258 (977)
. ..+ ..-..+.+++++.++..+++..... ......-.++....+++.+
T Consensus 312 ~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls 368 (854)
T 1qvr_A 312 REIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLS 368 (854)
T ss_dssp HHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHH
T ss_pred hhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHH
Confidence 1 111 1113589999999999999875432 0111112234555566655
No 203
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.0017 Score=71.86 Aligned_cols=300 Identities=8% Similarity=0.127 Sum_probs=145.8
Q ss_pred CCCC-CccEEEccCCCCCCCChhHHhcCCCccEEEccCCc---CCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCC
Q 002037 439 PKCP-RLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTN---ISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFG 511 (977)
Q Consensus 439 ~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~ 511 (977)
.++. .|+.+.+.. .+..+....|.++.+|+.+.+..+. +..+.. .+..+..|+.+.+..+ +.. ...+..+.
T Consensus 60 ~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 60 CNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp TTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred cCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 3443 477777754 3666677777888888888877653 444443 5566667766665443 221 23445566
Q ss_pred CccEEEccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccCCcCCccccccccCcCccccccc
Q 002037 512 ELEVLILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGNSFGDWEVEETANGQNARFSEVA 590 (977)
Q Consensus 512 ~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 590 (977)
+|+.+.+.. .+..++.. +..+.+|+.+.+..+ ...+....+. ..+|+.+.+..... ......+.
T Consensus 138 ~L~~i~lp~-~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~~~~-----------~i~~~af~ 202 (394)
T 4gt6_A 138 ELDTVTIPE-GVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPAKVT-----------RIGTNAFS 202 (394)
T ss_dssp TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECTTCC-----------EECTTTTT
T ss_pred ccccccccc-eeeeecccceecccccccccccce--eeEecccccc-ccceeEEEECCccc-----------ccccchhh
Confidence 666666643 23333332 455666666666543 3344444333 24555555533210 00112233
Q ss_pred cCCCCcEEEeeecCccccccCCCCCCCCcceEEEEecCcccCCCCcceeeecccchhhHHHHHHHHhccceeEecCCCCc
Q 002037 591 SLTRLTVLYIHVSNTKVLSVDFDGPWTNLKRFRVCVNDDYWEIAPKRSMHLKNLSNSIASWVKLLLEKTEYLTLTRSSNL 670 (977)
Q Consensus 591 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 670 (977)
.+..|..........................-.+.... ...+..+.+ ..++
T Consensus 203 ~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~i--p~~v 253 (394)
T 4gt6_A 203 ECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPS---------------------------QREDPAFKI--PNGV 253 (394)
T ss_dssp TCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCT---------------------------TCCCSEEEC--CTTE
T ss_pred hccccceecccccccccccceeeccccccccccccccc---------------------------ccccceEEc--CCcc
Confidence 33444443333221111110000000000000000000 001111111 1122
Q ss_pred ccccccccCCCCCccEEeeccccccccccCCcccccccceEEEEEeecccceeeeccccccccccccccceeeccCccCc
Q 002037 671 QDIGEIDVQGFTGLMCMHLRACSMQRIFHSNFYPTVQILEELHVEYCYSLKEVFCLEDIEGEQAGLKRLRELVLVGLPKV 750 (977)
Q Consensus 671 ~~~~~l~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~L~~~~~L 750 (977)
..+....+.++.+|+.+.+.... ...+...+.++++|+.+.+.. .+..+... . -..+.+|+.+.|.. ++
T Consensus 254 ~~i~~~aF~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~-a----F~~c~~L~~i~lp~--~v 322 (394)
T 4gt6_A 254 ARIETHAFDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFSS--RITELPES-V----FAGCISLKSIDIPE--GI 322 (394)
T ss_dssp EEECTTTTTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECCT--TCCEECTT-T----TTTCTTCCEEECCT--TC
T ss_pred eEcccceeeecccccEEeccccc--ceecCcccccccccccccCCC--cccccCce-e----ecCCCCcCEEEeCC--cc
Confidence 22333334456677777775441 123444566777788777642 23332210 0 11267888888854 35
Q ss_pred ceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEeccc
Q 002037 751 LTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSILKC 800 (977)
Q Consensus 751 ~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l~~c 800 (977)
+.+ +...+..|.+|+.+.+.. .++.+.. ..+.++.+|+.+.+.+.
T Consensus 323 ~~I--~~~aF~~C~~L~~i~ip~--sv~~I~~-~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 323 TQI--LDDAFAGCEQLERIAIPS--SVTKIPE-SAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CEE--CTTTTTTCTTCCEEEECT--TCCBCCG-GGGTTCTTCCEEEESSC
T ss_pred cEe--hHhHhhCCCCCCEEEECc--ccCEEhH-hHhhCCCCCCEEEECCc
Confidence 554 445667788999999853 4666632 34567888998888764
No 204
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.74 E-value=0.00065 Score=74.35 Aligned_cols=174 Identities=15% Similarity=0.150 Sum_probs=96.4
Q ss_pred CcccccchHHHHHHHHHHhh----c-------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH
Q 002037 69 EFVPLKSALEVIKSVMKLLK----D-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~----~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~ 136 (977)
.+..+.|-++.+++|.+.+. . +-...+-|.++|++|+|||++|+++++. ...| +.++.+.-.+
T Consensus 207 t~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 207 TYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp CCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEEGGGGCC--
T ss_pred CHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEEhHHhhc--
Confidence 34456676766666655431 1 1123678999999999999999999998 5443 3343332110
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCC--CCCCCC
Q 002037 137 RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPY--GEEHKG 198 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~--~~~~~g 198 (977)
...+.+ ......+....+...+++|++|+++.... ...+...+ .....+
T Consensus 282 ------------k~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 ------------KYVGEG-ARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ------------CSSSHH-HHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ------------ccCCHH-HHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 001111 11122222223346789999999874310 00011111 122335
Q ss_pred eEEEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 199 CKIILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 199 s~iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
-.||.||...+. .+.-.-+..++++..+.++-.++|+.++.......+. -...|++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv--dl~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI--RWELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC--CHHHHHHHCCCCC
Confidence 566777765543 1111344688999999999999998877532211111 1356777887754
No 205
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00049 Score=75.63 Aligned_cols=173 Identities=20% Similarity=0.231 Sum_probs=94.8
Q ss_pred cccccchHHHHHHHHHHhh----c-------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHH
Q 002037 70 FVPLKSALEVIKSVMKLLK----D-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 137 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~----~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~ 137 (977)
+..+.|-++.+++|.+.+. . +-...+-|.++|++|+|||++|+++++. ...| +.++.+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~~s~l~s--- 253 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSPASGIVD--- 253 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGTCC---
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEehhhhcc---
Confidence 4445666666666655442 1 1123578999999999999999999998 4433 3344332211
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCC--CCCCCCe
Q 002037 138 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPY--GEEHKGC 199 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~--~~~~~gs 199 (977)
...+.+ ......+........+.+|++|+++.... +..+...+ .....+.
T Consensus 254 -----------k~~Ges-e~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~v 321 (437)
T 4b4t_L 254 -----------KYIGES-ARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQT 321 (437)
T ss_dssp -----------SSSSHH-HHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSS
T ss_pred -----------ccchHH-HHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCe
Confidence 001111 11122222223346789999999974310 00111111 1223455
Q ss_pred EEEEecCChHHHhh--cc---CCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 200 KIILTSRFKEVCDE--ME---STNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 200 ~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
.||.||...+.... .. -+..++++..+.++-.++|+.+.......++. -...+++.+.|.-
T Consensus 322 ivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~--dl~~lA~~t~G~s 387 (437)
T 4b4t_L 322 KIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF--DFEAAVKMSDGFN 387 (437)
T ss_dssp EEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC--CHHHHHHTCCSCC
T ss_pred EEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhCCCCC
Confidence 77888876654211 11 23568888888888889988776422111111 1356677777754
No 206
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.68 E-value=1.5e-05 Score=77.85 Aligned_cols=108 Identities=17% Similarity=0.214 Sum_probs=56.0
Q ss_pred HhcCCCccEEEccCC-cCCC-----CCCCcccCCCCCeEecCCCCCCC------CccccCCCCccEEEccCCCCcc----
Q 002037 462 FEHTREIKNLDLSST-NISS-----LAPSLPCLEKLRSLHLENTHLND------ASLIREFGELEVLILKGSRIVE---- 525 (977)
Q Consensus 462 ~~~l~~Lr~L~l~~~-~~~~-----lp~~~~~l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~~---- 525 (977)
+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.+ ...+...++|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344555666666655 4431 22334445566666666666554 1233344566666666666552
Q ss_pred -cCccccCCCCCCEEEc--CCCCCCCccCh---hhhhcCccccEEEccCC
Q 002037 526 -LPNGIGTVSNLKLLDL--SNNLFLQVIPP---NVISKLSQLEELYVGNS 569 (977)
Q Consensus 526 -lp~~i~~l~~L~~L~l--~~~~~~~~~p~---~~i~~L~~L~~L~l~~~ 569 (977)
+...+...++|++|++ ++|.+...... ..+...++|++|++++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4455556666777777 55654322110 11334455666666554
No 207
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.66 E-value=2.3e-05 Score=85.14 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=31.6
Q ss_pred CCCCccEEEccCCCCcc-cCccc---cCCCCCCEEEcCCCCCCCc----cChhhhhcCccccEEEccCC
Q 002037 509 EFGELEVLILKGSRIVE-LPNGI---GTVSNLKLLDLSNNLFLQV----IPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 509 ~l~~L~~L~l~~~~l~~-lp~~i---~~l~~L~~L~l~~~~~~~~----~p~~~i~~L~~L~~L~l~~~ 569 (977)
.+++|++|++++|.+.. .+..+ ..+++|++|+|+.|.+... ++.+ +..+++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~-L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDH-VDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTT-HHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhh-cccCCcceEEECCCC
Confidence 35666666666665541 11111 2456677777766653332 1222 344566777776655
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.66 E-value=7.8e-05 Score=72.44 Aligned_cols=118 Identities=15% Similarity=0.161 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHhhcCC-CceeEEEEEcCCCChHHHHHHHHHhh-c-CCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc
Q 002037 75 SALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE 151 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~-~-~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~ 151 (977)
++.+.++.+.+.+.+-. ..-..++|+|+.|+||||||+.+++. . ..-..+++++ ..++...+.........
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 18 SQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE------HHHHHHHHHHHhcCchH
Confidence 35555666655554322 12468999999999999999999987 2 2111233443 34444444433322111
Q ss_pred cchHHHHHHHHHHHHHccceEEEEecCcccc--cccc--ccccCCCC-CCCCeEEEEecCCh
Q 002037 152 GDVEVLRAAFLSERLKRQKRVLIILDDLWGK--LDLA--VVGIPYGE-EHKGCKIILTSRFK 208 (977)
Q Consensus 152 ~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~--~~~~--~l~~~~~~-~~~gs~iivTtR~~ 208 (977)
. .+.+.+. +.-+|||||++.. ..|. .+...+.. ...|..||+||...
T Consensus 92 ~--------~~~~~~~--~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 92 T--------KFLKTVL--NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp S--------HHHHHHH--TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred H--------HHHHHhc--CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1 1222232 5678999999732 2221 11111111 12467788888643
No 209
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00081 Score=72.81 Aligned_cols=176 Identities=14% Similarity=0.128 Sum_probs=95.4
Q ss_pred CCCcccccchHHHHHHHHHHhh----cC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCC
Q 002037 67 TPEFVPLKSALEVIKSVMKLLK----DN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPD 134 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~----~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~ 134 (977)
...+..+.|-++.+++|.+.+. .. -...+-|.++|++|+|||.+|+++++. ...| +.++.+.-.+
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f---i~v~~s~l~s 254 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF---LRIVGSELIQ 254 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE---EEEESGGGCC
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE---EEEEHHHhhh
Confidence 3344455666666666655432 11 123578999999999999999999998 4443 2333222110
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCC--CCCC
Q 002037 135 VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPY--GEEH 196 (977)
Q Consensus 135 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~--~~~~ 196 (977)
...+.+ ......+....+...+.+|++|+++.... +..+...+ ....
T Consensus 255 --------------k~vGes-ek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~ 319 (437)
T 4b4t_I 255 --------------KYLGDG-PRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR 319 (437)
T ss_dssp --------------SSSSHH-HHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS
T ss_pred --------------ccCchH-HHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC
Confidence 001111 11222222233346789999999874310 00111111 1223
Q ss_pred CCeEEEEecCChHHHhh-c----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 197 KGCKIILTSRFKEVCDE-M----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 197 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
.+-.||.||...+.... + .-+..+.++.-+.++-.++|..++....-.++. -...|++.+.|.-
T Consensus 320 ~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 320 GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 45567778866654221 1 123467888889999999998877532211111 1356677777754
No 210
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.63 E-value=0.001 Score=72.96 Aligned_cols=174 Identities=13% Similarity=0.129 Sum_probs=90.8
Q ss_pred CcccccchHHHHHHHHHHhhc-----------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKD-----------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~ 136 (977)
.+..+.|-++.+++|.+.+.- +-...+-|.++|++|+|||++|+++++. ..+| +.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEEEGGGTCC--
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEEecchhhc--
Confidence 344566777777666654421 1123567999999999999999999998 4443 3344333211
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCC--CCCCCC
Q 002037 137 RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPY--GEEHKG 198 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~--~~~~~g 198 (977)
...+.+ ......+....+...+.++++|+++.... ...+...+ .....+
T Consensus 245 ------------~~~Ge~-e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~ 311 (428)
T 4b4t_K 245 ------------KYLGEG-PRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTN 311 (428)
T ss_dssp ------------SSCSHH-HHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCS
T ss_pred ------------cccchh-HHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 000111 11122222222346789999999864210 01111111 022345
Q ss_pred eEEEEecCChHH-----HhhccCCceEEccCC-CHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 199 CKIILTSRFKEV-----CDEMESTNYVQVEEL-TDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 199 s~iivTtR~~~v-----~~~~~~~~~~~l~~L-~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
-.||.||...+. .+...-+..++++.+ +.++-.++|..++......++. -...+++.+.|.-
T Consensus 312 v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 312 VKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp EEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred EEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 567778865543 111122346778766 4555556666655321111111 1356677777754
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.62 E-value=0.0005 Score=77.54 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=98.2
Q ss_pred CcccccchHHHHHHHHHHhhcC-----------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDN-----------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~-----------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~ 136 (977)
.+..+.|.+..++++.+++... ....+-|.|+|+.|+|||++|+.+++. ...| +.++.+.
T Consensus 202 ~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~f---v~vn~~~----- 273 (489)
T 3hu3_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPE----- 273 (489)
T ss_dssp CGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEE---EEEEHHH-----
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCE---EEEEchH-----
Confidence 3456788888888887766421 122457999999999999999999887 3332 3343211
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc-------------ccccccCCC--CCCCCeEE
Q 002037 137 RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD-------------LAVVGIPYG--EEHKGCKI 201 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~-------------~~~l~~~~~--~~~~gs~i 201 (977)
+.. ...+..... ...+......+++.+|+||+++.... ...+...+. ....+.+|
T Consensus 274 -----l~~----~~~g~~~~~-~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 274 -----IMS----KLAGESESN-LRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp -----HHT----SCTTHHHHH-HHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred -----hhh----hhcchhHHH-HHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 111 011111111 11222222336778999999953211 011111111 12335567
Q ss_pred EEecCChHH-Hhhc----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCC-hhHHHHH
Q 002037 202 ILTSRFKEV-CDEM----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKL-PNAIVII 268 (977)
Q Consensus 202 ivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~gl-PLai~~~ 268 (977)
|.||...+- ...+ .....+.+...+.++-.+++..++.......+ ....++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 777765532 1111 22346899999999999999988753221111 1135566677764 4334433
No 212
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.61 E-value=0.00037 Score=76.47 Aligned_cols=177 Identities=14% Similarity=0.150 Sum_probs=96.9
Q ss_pred CCCCcccccchHHHHHHHHHHhh----c-------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCC
Q 002037 66 PTPEFVPLKSALEVIKSVMKLLK----D-------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 133 (977)
Q Consensus 66 ~~~~~~~~~gr~~~~~~l~~~l~----~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~ 133 (977)
|...+..+.|-++.+++|.+.+. . +-...+-|.++|++|+|||.+|+++++. ...| +.++.+.-.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~~s~l~ 252 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLAAPQLV 252 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEEGGGGC
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEehhhhh
Confidence 44456667787877777766432 1 1123678999999999999999999998 4433 333333211
Q ss_pred CHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc-------c---------ccccccCCC--CC
Q 002037 134 DVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL-------D---------LAVVGIPYG--EE 195 (977)
Q Consensus 134 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~-------~---------~~~l~~~~~--~~ 195 (977)
+ ...+.+ ......+....+...+++|++|+++... . ...+...+. ..
T Consensus 253 ~--------------~~vGes-e~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 253 Q--------------MYIGEG-AKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp S--------------SCSSHH-HHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred h--------------cccchH-HHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 0 001111 1112222222233578999999986420 0 001111111 12
Q ss_pred CCCeEEEEecCChHHHhh-c----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 196 HKGCKIILTSRFKEVCDE-M----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 196 ~~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
..+-.||.||...+.... + .-+..++++..+.++-.++|+.++......++. -...|++.+.|.-
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv--dl~~lA~~t~G~s 387 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI--NWQELARSTDEFN 387 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC--CHHHHHHHCSSCC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 234456668876654211 1 223578899889999888887665411111111 1356777777753
No 213
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.59 E-value=2.1e-05 Score=76.83 Aligned_cols=108 Identities=17% Similarity=0.180 Sum_probs=77.8
Q ss_pred CCCCCccEEEccCC-CCCCCC----hhHHhcCCCccEEEccCCcCCC-----CCCCcccCCCCCeEecCCCCCCC-----
Q 002037 439 PKCPRLTTLFLQNN-PFADIP----NAFFEHTREIKNLDLSSTNISS-----LAPSLPCLEKLRSLHLENTHLND----- 503 (977)
Q Consensus 439 ~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~Lr~L~l~~~~~~~-----lp~~~~~l~~L~~L~L~~~~l~~----- 503 (977)
...+.|++|++++| .+.... ...+...+.|++|+|++|.+.. +...+...++|++|+|++|.+.+
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 34667888888877 665321 2234556788888888888763 33455566789999999998876
Q ss_pred -CccccCCCCccEEEc--cCCCCc-----ccCccccCCCCCCEEEcCCCCC
Q 002037 504 -ASLIREFGELEVLIL--KGSRIV-----ELPNGIGTVSNLKLLDLSNNLF 546 (977)
Q Consensus 504 -~~~i~~l~~L~~L~l--~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~ 546 (977)
...+...++|++|+| ++|.+. .+...+...++|++|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 345667788999999 778776 3555566778999999999863
No 214
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.54 E-value=0.0018 Score=69.65 Aligned_cols=175 Identities=14% Similarity=0.136 Sum_probs=94.0
Q ss_pred CCCcccccchHHHHHHHHHHhhcC---CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDN---SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
..++..++|++..++.+-..+... +.....+.|+|+.|+||||||+.+++. ...|. ..+..-......+
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~---~~sg~~~~~~~~l---- 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH---VTSGPVLVKQGDM---- 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE---EEETTTCCSHHHH----
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE---EEechHhcCHHHH----
Confidence 345566788887777776666432 112467999999999999999999988 43321 1111111111111
Q ss_pred HHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--ccccccc---CCC-C----CC----------C-CeEE
Q 002037 143 ARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--DLAVVGI---PYG-E----EH----------K-GCKI 201 (977)
Q Consensus 143 ~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--~~~~l~~---~~~-~----~~----------~-gs~i 201 (977)
..+...+ .++-++++|++.... ..+.+.. ... . .+ + -.-|
T Consensus 94 -----------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 94 -----------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0011111 233466778775431 1111100 000 0 00 0 1122
Q ss_pred EEecCChHHHhhc--cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 202 ILTSRFKEVCDEM--ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 202 ivTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
-.|++...+...+ .....+.+++.+.++-.+++.+.+... ...-.++.+..|+++++|.|-.+..+
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~-~~~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM-DVEIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-TCCBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHhcCCChHHHHHH
Confidence 3455544331111 112358899999999999998876411 11233567889999999999654433
No 215
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.51 E-value=0.00073 Score=75.50 Aligned_cols=174 Identities=16% Similarity=0.208 Sum_probs=94.0
Q ss_pred CcccccchHHHHHHHHH---HhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHH
Q 002037 69 EFVPLKSALEVIKSVMK---LLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 137 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~---~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~ 137 (977)
.+..+.|.++.++++.+ .+... ....+-|.|+|++|+|||+||+.+++. ...| +.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEEGGGTTTC--
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCCHHHHHHH--
Confidence 34456666665555544 33321 011235889999999999999999988 4333 33443332110
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCC--CCCCCe
Q 002037 138 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EEHKGC 199 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs 199 (977)
..+.. ......+......+.+.+|+||+++.... +..+...+. ....+.
T Consensus 89 ------------~~g~~-~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~v 155 (476)
T 2ce7_A 89 ------------FVGVG-AARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGI 155 (476)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTE
T ss_pred ------------Hhccc-HHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCE
Confidence 00001 11112222222335789999999965311 111111110 112456
Q ss_pred EEEEecCChHHHh-h-c---cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 200 KIILTSRFKEVCD-E-M---ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 200 ~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
.||.||...+... . . .-...+.++..+.++-.+++..++....-.++. ....+++.+.|..
T Consensus 156 iVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 156 IVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred EEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 7788887765422 1 1 123478899999888888888776532111111 1344777888876
No 216
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.51 E-value=0.00042 Score=83.84 Aligned_cols=147 Identities=15% Similarity=0.230 Sum_probs=81.1
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cC-C-----CCE-EEEEEeCCCCCHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EI-P-----FDK-VIFVRVTQTPDVKRVQD 140 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~-~-----f~~-~~wv~~~~~~~~~~~~~ 140 (977)
.+.+++||++++++++..+.... ..-+.++|++|+|||++|+.+++. .. . .+. .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~----------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM----------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-----------
Confidence 45578999999999999987654 445789999999999999999987 11 1 121 122222
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccccccccccCCCCCCCCeEEEEecCChHHHh------h-
Q 002037 141 EIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLDLAVVGIPYGEEHKGCKIILTSRFKEVCD------E- 213 (977)
Q Consensus 141 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~------~- 213 (977)
+....+.. ......+.......++.+|++|. .......+...+ . ...-++|.||....... .
T Consensus 245 ------g~~~~G~~-e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l-~-~~~v~~I~at~~~~~~~~~~~d~al 313 (758)
T 3pxi_A 245 ------GTKYRGEF-EDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL-A-RGELQCIGATTLDEYRKYIEKDAAL 313 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC----------CCCT-T-SSSCEEEEECCTTTTHHHHTTCSHH
T ss_pred ------cccccchH-HHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH-h-cCCEEEEeCCChHHHHHHhhccHHH
Confidence 00000000 01112222333345778999992 221112222222 2 22345666555443100 0
Q ss_pred ccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 214 MESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 214 ~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
...-..+.++..+.++..+++.....
T Consensus 314 ~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 314 ERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 01114689999999999999987654
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.47 E-value=0.0015 Score=67.44 Aligned_cols=176 Identities=18% Similarity=0.166 Sum_probs=89.2
Q ss_pred CCcccccchHHHHHHHHH---HhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHH
Q 002037 68 PEFVPLKSALEVIKSVMK---LLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~---~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~ 136 (977)
..+..++|.++.++++.+ .+.... ...+-+.|+|+.|+||||+|+.+++. ...| +.++.+.-.+.
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~~~~~~~~- 84 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTISGSDFVEM- 84 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEECSCSSTTS-
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEeHHHHHHH-
Confidence 344556666655555544 333210 11345889999999999999999988 4333 33332221110
Q ss_pred HHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCC--CCCCC
Q 002037 137 RVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EEHKG 198 (977)
Q Consensus 137 ~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~g 198 (977)
..+... .....+.+......+.++++|+++.... ...+...+. ....+
T Consensus 85 -------------~~~~~~-~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 85 -------------FVGVGA-SRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -------------CCCCCH-HHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -------------hhhhhH-HHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 000111 1111222222234678999999954311 001110010 12335
Q ss_pred eEEEEecCChHHH-hhc----cCCceEEccCCCHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHhCC-Chh
Q 002037 199 CKIILTSRFKEVC-DEM----ESTNYVQVEELTDEDRLILFKKKAGLPEGTKAFDRAAEEVVRQCGK-LPN 263 (977)
Q Consensus 199 s~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~g-lPL 263 (977)
..||.||...+.. ... .....+.++..+.++-.+++..++....-.++ .....++..+.| .+-
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGA 219 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHH
Confidence 5677777665421 111 12356788888888888888777642211111 113445666666 443
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=0.00015 Score=74.41 Aligned_cols=56 Identities=18% Similarity=0.252 Sum_probs=28.8
Q ss_pred CCCCccEEEccCCCCcccCccccCCC--CCCEEEcCCCCCCCccCh------hhhhcCccccEEE
Q 002037 509 EFGELEVLILKGSRIVELPNGIGTVS--NLKLLDLSNNLFLQVIPP------NVISKLSQLEELY 565 (977)
Q Consensus 509 ~l~~L~~L~l~~~~l~~lp~~i~~l~--~L~~L~l~~~~~~~~~p~------~~i~~L~~L~~L~ 565 (977)
.+++|++|+|++|.+..+. .+..+. +|++|++++|.+...+|. .++..+++|+.|+
T Consensus 194 ~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 194 KAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp HSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4444444444444444331 122222 667777777665544441 2356677777664
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.44 E-value=0.00018 Score=76.96 Aligned_cols=60 Identities=22% Similarity=0.267 Sum_probs=41.5
Q ss_pred ccchHHHHHHHHHHhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 73 LKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
++|.+..++.+...+... ......+.++|+.|+|||++|+.+++. ...-...+.++++..
T Consensus 19 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 557777777777766542 112358999999999999999999988 332233556665543
No 220
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.44 E-value=0.00011 Score=76.55 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=38.5
Q ss_pred cccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 70 FVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
+..++|+...+.++.+.+..-......|.|+|..|+|||++|+.+++. ...-...+.++++.
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 445678877777777655431111346789999999999999999988 22212345566554
No 221
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.38 E-value=0.00011 Score=75.29 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=58.0
Q ss_pred hcCCCccEEEccCCcCCCCC---CCcccCCCCCeEecCCCCCCCCccccCCC--CccEEEccCCCCcc-cCc-------c
Q 002037 463 EHTREIKNLDLSSTNISSLA---PSLPCLEKLRSLHLENTHLNDASLIREFG--ELEVLILKGSRIVE-LPN-------G 529 (977)
Q Consensus 463 ~~l~~Lr~L~l~~~~~~~lp---~~~~~l~~L~~L~L~~~~l~~~~~i~~l~--~L~~L~l~~~~l~~-lp~-------~ 529 (977)
.+++.|+.|+|++|.+..++ ..+..+++|++|+|++|.+.....+..+. +|++|+|++|.+.. +|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 46778888888888877654 45567888888888888887755555555 88888888888763 442 2
Q ss_pred ccCCCCCCEEEc
Q 002037 530 IGTVSNLKLLDL 541 (977)
Q Consensus 530 i~~l~~L~~L~l 541 (977)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 667888888864
No 222
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.38 E-value=0.0012 Score=79.85 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=88.4
Q ss_pred CcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCC-----CCEEEE-EEeCCCCCHHHHHH
Q 002037 69 EFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIP-----FDKVIF-VRVTQTPDVKRVQD 140 (977)
Q Consensus 69 ~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~-----f~~~~w-v~~~~~~~~~~~~~ 140 (977)
.+..++||+++++++++.+.... ..-+.|+|.+|+|||++|+.+++. ... .+..+| ++++.-..
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~--~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------ 255 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------ 255 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSS--SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C------
T ss_pred CCCCccCCHHHHHHHHHHHhccC--CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc------
Confidence 45568899999999999987655 456789999999999999999987 211 233333 22211100
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCccccc--------cc--cccccCCCCCCCCeEEEEecCChHH
Q 002037 141 EIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKL--------DL--AVVGIPYGEEHKGCKIILTSRFKEV 210 (977)
Q Consensus 141 ~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~--------~~--~~l~~~~~~~~~gs~iivTtR~~~v 210 (977)
+....+ ........+.+.+...++.+|++|+++... .. ..+..++.. ..+.++|.+|...+.
T Consensus 256 ------~~~~~g-~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~ 327 (758)
T 1r6b_X 256 ------GTKYRG-DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEF 327 (758)
T ss_dssp ------CCCCSS-CHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHH
T ss_pred ------cccccc-hHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHH
Confidence 000011 111222333334434467899999997541 11 111122222 234456666655443
Q ss_pred Hhhcc-------CCceEEccCCCHHHHHHHHHHhc
Q 002037 211 CDEME-------STNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 211 ~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
..... .-..+.+++.+.++..+++...+
T Consensus 328 ~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 328 SNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 21111 11368899999999998887654
No 223
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.26 E-value=0.0015 Score=69.54 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHhhcC------------CCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLKDN------------SISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|+++.++.+...+... ......+.|+|+.|+|||++|+.+++.
T Consensus 17 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 678888888888776540 112457889999999999999999988
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.23 E-value=0.00013 Score=76.06 Aligned_cols=127 Identities=20% Similarity=0.213 Sum_probs=66.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVL 173 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~L 173 (977)
+-+.|+|+.|+|||++|+.+++. ...|- .+..+.-.+. ..+..... ...+.+.....++.+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~~~~~---~v~~~~~~~~---------~~~~~~~~------~~~~~~~a~~~~~~v 106 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAHVPFF---SMGGSSFIEM---------FVGLGASR------VRDLFETAKKQAPSI 106 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHTCCCC---CCCSCTTTTS---------CSSSCSSS------SSTTHHHHHHSCSCE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEE---EechHHHHHh---------hcchHHHH------HHHHHHHHHhcCCeE
Confidence 34789999999999999999988 43331 1111111000 00000000 001111112245689
Q ss_pred EEecCccccc-----------------cccccccCCCC---CCCCeEEEEecCChHHHh-h-c---cCCceEEccCCCHH
Q 002037 174 IILDDLWGKL-----------------DLAVVGIPYGE---EHKGCKIILTSRFKEVCD-E-M---ESTNYVQVEELTDE 228 (977)
Q Consensus 174 lvlDdv~~~~-----------------~~~~l~~~~~~---~~~gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~ 228 (977)
|++||++... ....+...+.. ......||.||....... . . .....+.++..+.+
T Consensus 107 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~ 186 (268)
T 2r62_A 107 IFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFN 186 (268)
T ss_dssp EEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTT
T ss_pred EEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHH
Confidence 9999996541 11222222211 112346777776654211 1 1 12346778888888
Q ss_pred HHHHHHHHhcC
Q 002037 229 DRLILFKKKAG 239 (977)
Q Consensus 229 ~~~~lf~~~~~ 239 (977)
+-.+++...+.
T Consensus 187 ~r~~il~~~~~ 197 (268)
T 2r62_A 187 GRVEILKVHIK 197 (268)
T ss_dssp THHHHHHHHTS
T ss_pred HHHHHHHHHHh
Confidence 88888877664
No 225
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.22 E-value=0.0099 Score=65.64 Aligned_cols=142 Identities=15% Similarity=0.227 Sum_probs=98.5
Q ss_pred ccEEEeccCCCccCCC--CCCCCCccEEEccCCC---CCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEe
Q 002037 422 CEKLSLMDGNVTALPD--QPKCPRLTTLFLQNNP---FADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLH 495 (977)
Q Consensus 422 ~~~l~l~~~~~~~l~~--~~~~~~L~~L~l~~~~---~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~ 495 (977)
++.+.+.. .++.+.. +.+|.+|+.+.+..+. +..+....|.++..|+.+.+..+ +..++. .+..+.+|+.+.
T Consensus 66 L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 56666653 3555543 5789999999998763 66777888999999998877654 455554 678899999999
Q ss_pred cCCCCCCC-CccccCCCCccEEEccCCCCcccCccccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEccC
Q 002037 496 LENTHLND-ASLIREFGELEVLILKGSRIVELPNGIGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVGN 568 (977)
Q Consensus 496 L~~~~l~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~~ 568 (977)
+......- ...+..+..|+.+.+..+ +..+....-...+|+.+.+..+ ...+....+..+.++.......
T Consensus 144 lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 144 IPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK--VTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp CCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT--CCEECTTTTTTCTTCCEEEECC
T ss_pred ccceeeeecccceecccccccccccce-eeEeccccccccceeEEEECCc--ccccccchhhhccccceecccc
Confidence 97543211 456677888999988754 6666655444567888888765 3344445577788888776543
No 226
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.21 E-value=0.0017 Score=73.15 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=34.9
Q ss_pred cccccchHHHHHH---HHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 70 FVPLKSALEVIKS---VMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 70 ~~~~~gr~~~~~~---l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.+++|.++.++. +++.+..+....+-+.++|++|+|||++|+.+++.
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHH
Confidence 3456777776664 44445444333457899999999999999999987
No 227
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.14 E-value=0.0002 Score=66.78 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=28.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
-..++|+|..|+|||||++.+++. ...=..++++....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAAS 74 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHH
Confidence 458999999999999999999988 32111266666544
No 228
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.12 E-value=0.0032 Score=74.62 Aligned_cols=149 Identities=13% Similarity=0.145 Sum_probs=82.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
.+-|.++|++|+|||+||+++++. ..+| +.|+.+. + . ....+.. ......+.+..+...+.
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~~~~------l----~----sk~~ges-e~~lr~lF~~A~~~~Ps 299 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPE------I----M----SKLAGES-ESNLRKAFEEAEKNAPA 299 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEEHHH------H----H----SSCTTHH-HHHHHHHHHHHTTSCSE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEEhHH------h----h----cccchHH-HHHHHHHHHHHHHcCCe
Confidence 568999999999999999999998 4333 3343221 1 0 0111111 11222233333346789
Q ss_pred EEEecCcccccc--------c-----cccccCCC--CCCCCeEEEEecCChHHH-hhc----cCCceEEccCCCHHHHHH
Q 002037 173 LIILDDLWGKLD--------L-----AVVGIPYG--EEHKGCKIILTSRFKEVC-DEM----ESTNYVQVEELTDEDRLI 232 (977)
Q Consensus 173 LlvlDdv~~~~~--------~-----~~l~~~~~--~~~~gs~iivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~ 232 (977)
+|+||+++.... . ..+...+. ....+-.||.||...+.. ..+ .-...+++...+.++-.+
T Consensus 300 IIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~ 379 (806)
T 3cf2_A 300 IIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLE 379 (806)
T ss_dssp EEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHH
T ss_pred EEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHH
Confidence 999999975410 0 01110000 112234566676655431 111 234578999999999999
Q ss_pred HHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 233 LFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 233 lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
+|+.+........+ .-...|++++.|.-
T Consensus 380 IL~~~l~~~~~~~d--vdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 380 ILQIHTKNMKLADD--VDLEQVANETHGHV 407 (806)
T ss_dssp HHHHTCSSSEECTT--CCHHHHHHHCCSCC
T ss_pred HHHHHhcCCCCCcc--cCHHHHHHhcCCCC
Confidence 99887652211111 11456778888765
No 229
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.11 E-value=0.0027 Score=66.72 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=24.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPF 121 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f 121 (977)
.+.+.++|++|+|||+||+.+++. ..+|
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 568899999999999999999998 4443
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.07 E-value=0.00037 Score=84.29 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=80.1
Q ss_pred cccchHHHHHHHHHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 72 PLKSALEVIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
.++|.+..++.+...+.... .....+.++|+.|+|||++|+.+++. ...-...+.++++.-.+.....
T Consensus 492 ~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~---- 567 (758)
T 3pxi_A 492 RVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS---- 567 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC----
T ss_pred cCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc----
Confidence 36788888888877765321 12347999999999999999999988 3333345566655422100000
Q ss_pred HHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc--ccccccC-----CC------CCCCCeEEEEecCC---
Q 002037 144 RFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD--LAVVGIP-----YG------EEHKGCKIILTSRF--- 207 (977)
Q Consensus 144 ~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~--~~~l~~~-----~~------~~~~gs~iivTtR~--- 207 (977)
...+...+.....-+|+||+++.... ...+... +. ......+||+||..
T Consensus 568 ---------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~ 632 (758)
T 3pxi_A 568 ---------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGAS 632 (758)
T ss_dssp ------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTT
T ss_pred ---------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChh
Confidence 00111112223345889999976521 1111110 10 11235688888873
Q ss_pred --h------------HHHhhccCCceEEccCCCHHHHHHHHHHh
Q 002037 208 --K------------EVCDEMESTNYVQVEELTDEDRLILFKKK 237 (977)
Q Consensus 208 --~------------~v~~~~~~~~~~~l~~L~~~~~~~lf~~~ 237 (977)
. ++...+ ...+.+.+++.++..+++...
T Consensus 633 ~~~~~~~~~~~~f~p~l~~Rl--~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 633 EKDKVMGELKRAFRPEFINRI--DEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp CCHHHHHHHHHHSCHHHHTTS--SEEEECC--CHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhCCHHHHhhC--CeEEecCCCCHHHHHHHHHHH
Confidence 1 111222 247889999988887777665
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.06 E-value=5.3e-05 Score=70.34 Aligned_cols=47 Identities=11% Similarity=0.063 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhhc
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQE 118 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 118 (977)
+++|+...++++.+.+..-.....-|.|+|..|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 35677777777776654311112357899999999999999998763
No 232
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.93 E-value=0.011 Score=61.20 Aligned_cols=153 Identities=15% Similarity=0.125 Sum_probs=80.8
Q ss_pred CCcccccchHHHHHHHHHHhh----------cCC-CceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCC--
Q 002037 68 PEFVPLKSALEVIKSVMKLLK----------DNS-ISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPD-- 134 (977)
Q Consensus 68 ~~~~~~~gr~~~~~~l~~~l~----------~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~-- 134 (977)
..+..+.|-++.++++.+.+. +-+ ...+-+.|+|++|+||||||+.++..... ..+++....-.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~ 84 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMY 84 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSST
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhh
Confidence 334456666666666654331 111 01123999999999999999999988222 344554332111
Q ss_pred HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc---------c----cccccCCC--CCCCCe
Q 002037 135 VKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD---------L----AVVGIPYG--EEHKGC 199 (977)
Q Consensus 135 ~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~---------~----~~l~~~~~--~~~~gs 199 (977)
..+.. .....+.+......+.++++|+++.... . ..+...+. ......
T Consensus 85 ~~~~~-----------------~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 85 VGESE-----------------RAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp THHHH-----------------HHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred hhHHH-----------------HHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 11110 1111222222224678999999865310 0 00000111 122345
Q ss_pred EEEEecCChHHHhh-----ccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 200 KIILTSRFKEVCDE-----MESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 200 ~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
-++.+|...++... -.-+..+.++..+.++-.++|+.+..
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 66777877766221 13346788999999999999988764
No 233
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.90 E-value=0.00053 Score=72.56 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|+...+.++.+.+..-......|.|+|..|+|||++|+.+.+.
T Consensus 4 iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 4 MIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp CCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred cEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHh
Confidence 567777777777666442212346789999999999999999987
No 234
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.89 E-value=0.0069 Score=62.23 Aligned_cols=146 Identities=14% Similarity=0.150 Sum_probs=74.9
Q ss_pred EEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEe
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIIL 176 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~Llvl 176 (977)
+.|+|+.|+||||||+.+++... ...+.++.. .+ ... .... .......+.+......+.++++
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~------~~----~~~----~~~~-~~~~i~~~~~~~~~~~~~i~~~ 114 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS------DF----VEM----FVGV-GAARVRDLFETAKRHAPCIVFI 114 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH------HH----HHS----CTTH-HHHHHHHHHHHHTTSSSEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH------HH----HHH----HhhH-HHHHHHHHHHHHHhcCCeEEEe
Confidence 89999999999999999998722 222333211 11 110 0000 0111222222222235689999
Q ss_pred cCcccccc----------------ccccccCCC--CCCCCeEEEEecCChHHHhh-----ccCCceEEccCCCHHHHHHH
Q 002037 177 DDLWGKLD----------------LAVVGIPYG--EEHKGCKIILTSRFKEVCDE-----MESTNYVQVEELTDEDRLIL 233 (977)
Q Consensus 177 Ddv~~~~~----------------~~~l~~~~~--~~~~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~l 233 (977)
|+++.... ...+...+. .......++.||...++... ......+.++..+.++-.++
T Consensus 115 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 194 (254)
T 1ixz_A 115 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 194 (254)
T ss_dssp ETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHH
T ss_pred hhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHH
Confidence 99953210 011111111 11233456667777665221 12335788999999988888
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHhCCC
Q 002037 234 FKKKAGLPEGTKAFDRAAEEVVRQCGKL 261 (977)
Q Consensus 234 f~~~~~~~~~~~~~~~~~~~i~~~~~gl 261 (977)
+..++....-.++ .....+++.+.|.
T Consensus 195 l~~~~~~~~~~~~--~~~~~la~~~~G~ 220 (254)
T 1ixz_A 195 LRIHARGKPLAED--VDLALLAKRTPGF 220 (254)
T ss_dssp HHHHHTTSCBCTT--CCHHHHHHTCTTC
T ss_pred HHHHHcCCCCCcc--cCHHHHHHHcCCC
Confidence 8776642111111 1133466666664
No 235
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.71 E-value=0.046 Score=59.82 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=26.3
Q ss_pred ccccceeeccCccCcceeeecccccccccccceEEEeecCCcccccchhHHhhcCCCceEEe
Q 002037 736 LKRLRELVLVGLPKVLTIWKGNHSVVYLKTLKLMKVKDCGKLRYLFSRTLAEGLGNLEDLSI 797 (977)
Q Consensus 736 ~~~L~~L~L~~~~~L~~i~~~~~~~~~l~~L~~L~l~~C~~L~~l~~~~~~~~l~~L~~L~l 797 (977)
+++|+.+.+.+. .++.+ +...+..+.+|+.+.+.. .++.+.. ..+.++.+|+++.+
T Consensus 285 c~~L~~i~l~~~-~i~~I--~~~aF~~c~~L~~i~lp~--~l~~I~~-~aF~~C~~L~~i~i 340 (379)
T 4h09_A 285 CSNLTKVVMDNS-AIETL--EPRVFMDCVKLSSVTLPT--ALKTIQV-YAFKNCKALSTISY 340 (379)
T ss_dssp CTTCCEEEECCT-TCCEE--CTTTTTTCTTCCEEECCT--TCCEECT-TTTTTCTTCCCCCC
T ss_pred cccccccccccc-cccee--hhhhhcCCCCCCEEEcCc--cccEEHH-HHhhCCCCCCEEEE
Confidence 556666665432 23332 233444566666666642 3444422 12344555555554
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.69 E-value=0.0069 Score=61.71 Aligned_cols=87 Identities=15% Similarity=0.095 Sum_probs=53.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cC-----CCCEEEEEEeCCCCCHHHHHHHHHHHhhhcc----------ccchH--
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EI-----PFDKVIFVRVTQTPDVKRVQDEIARFLNTEL----------EGDVE-- 155 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~----------~~~~~-- 155 (977)
.+++|+|++|+||||||+.++.. .. .-..++|++....++...+. ++++.++... .....
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTDH 103 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHHH
Confidence 39999999999999999999885 21 23678999887765555443 3334443221 00111
Q ss_pred -HHHHHHHHHHHHccceEEEEecCcccc
Q 002037 156 -VLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 156 -~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
......+.+.+...+.-++|+|++...
T Consensus 104 ~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 104 QTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 112233444454457789999987643
No 237
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.66 E-value=0.025 Score=58.94 Aligned_cols=147 Identities=12% Similarity=0.131 Sum_probs=75.7
Q ss_pred EEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEe
Q 002037 97 IGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIIL 176 (977)
Q Consensus 97 i~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~Llvl 176 (977)
+.|+|+.|+||||||+.+++... ...+.++.. .+ .... ... .......+.+......+.++++
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~------~~----~~~~----~~~-~~~~i~~~~~~~~~~~~~i~~i 138 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS------DF----VEMF----VGV-GAARVRDLFETAKRHAPCIVFI 138 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH------HH----HHST----TTH-HHHHHHHHHHHHHTSCSEEEEE
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecHH------HH----HHHH----hhH-HHHHHHHHHHHHHhcCCcEEeh
Confidence 89999999999999999998822 223333221 11 1100 000 0111222222222235689999
Q ss_pred cCccccc------------c----ccccccCCCC--CCCCeEEEEecCChHHH-----hhccCCceEEccCCCHHHHHHH
Q 002037 177 DDLWGKL------------D----LAVVGIPYGE--EHKGCKIILTSRFKEVC-----DEMESTNYVQVEELTDEDRLIL 233 (977)
Q Consensus 177 Ddv~~~~------------~----~~~l~~~~~~--~~~gs~iivTtR~~~v~-----~~~~~~~~~~l~~L~~~~~~~l 233 (977)
|+++... . ...+...+.. ......++.||...++. ........+.++..+.++-.++
T Consensus 139 Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~i 218 (278)
T 1iy2_A 139 DEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQI 218 (278)
T ss_dssp ETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHH
T ss_pred hhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHH
Confidence 9995321 0 0111111111 12234556677666542 1112345789999999988888
Q ss_pred HHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 234 FKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 234 f~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
+..++....-.++ .....++..+.|..
T Consensus 219 l~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 219 LRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp HHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred HHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 8876642111111 11345666666654
No 238
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.56 E-value=0.0039 Score=75.44 Aligned_cols=57 Identities=16% Similarity=0.177 Sum_probs=39.5
Q ss_pred ccchHHHHHHHHHHhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCC
Q 002037 73 LKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQ 131 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~ 131 (977)
++|.++.++.+...+... +.....+.++|+.|+|||++|+.+++... ...+.++++.
T Consensus 460 v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~--~~~~~i~~s~ 523 (758)
T 1r6b_X 460 VFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMSE 523 (758)
T ss_dssp SCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGGG
T ss_pred ccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc--CCEEEEechh
Confidence 567788887777666421 11245799999999999999999998731 2344555544
No 239
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.55 E-value=0.0094 Score=67.00 Aligned_cols=145 Identities=12% Similarity=0.153 Sum_probs=77.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH---ccceE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLK---RQKRV 172 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~---~~~~~ 172 (977)
-|.|+|+.|+||||||+.+++... ...+.++.+.-... ..+. ....+....+ ...+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~--------------~~g~----~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEM--------------FVGV----GAARVRDLFETAKRHAPC 125 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSS--------------CTTH----HHHHHHHHTTTSSSSSSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHh--------------hhhh----HHHHHHHHHHHHHhcCCC
Confidence 489999999999999999998822 12344443321100 0000 0111222222 12457
Q ss_pred EEEecCcccccc----------------ccccccCCC--CCCCCeEEEEecCChHHHhh--c---cCCceEEccCCCHHH
Q 002037 173 LIILDDLWGKLD----------------LAVVGIPYG--EEHKGCKIILTSRFKEVCDE--M---ESTNYVQVEELTDED 229 (977)
Q Consensus 173 LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~ 229 (977)
++++|+++.... ...+...+. ....+..|+.||...++... . .....+.++..+.++
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~ 205 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 205 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHH
Confidence 999999964310 011111111 11234566777777765221 1 223578899999999
Q ss_pred HHHHHHHhcCCCCCChhhHHHHHHHHHHhCCCh
Q 002037 230 RLILFKKKAGLPEGTKAFDRAAEEVVRQCGKLP 262 (977)
Q Consensus 230 ~~~lf~~~~~~~~~~~~~~~~~~~i~~~~~glP 262 (977)
-.+++..++....-.++ .....|+..+.|..
T Consensus 206 R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 206 REQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp HHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred HHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 99999877642111111 11345666777755
No 240
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.51 E-value=0.0094 Score=63.62 Aligned_cols=87 Identities=21% Similarity=0.376 Sum_probs=56.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCC------CCEEEEEEeCCCCCHHHHHHHHHHHhhhccc-----------cchH-
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIP------FDKVIFVRVTQTPDVKRVQDEIARFLNTELE-----------GDVE- 155 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~------f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~~~~- 155 (977)
.++.|+|.+|+||||+|.+++.. ... -..++|++....++..++.+ +++.++.... ...+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~~~ 186 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINTDH 186 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCHHH
Confidence 49999999999999999998876 221 35789999988877776653 3444443211 0111
Q ss_pred -HHHHHHHHHHHHc-cceEEEEecCcccc
Q 002037 156 -VLRAAFLSERLKR-QKRVLIILDDLWGK 182 (977)
Q Consensus 156 -~~~~~~l~~~l~~-~~~~LlvlDdv~~~ 182 (977)
......+...+.+ .+.-+||+|.+...
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHH
Confidence 1223344444444 56778999987543
No 241
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.47 E-value=0.0035 Score=76.62 Aligned_cols=60 Identities=22% Similarity=0.273 Sum_probs=41.1
Q ss_pred cccchHHHHHHHHHHhhcC-------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 72 PLKSALEVIKSVMKLLKDN-------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
.++|++..++.+...+... +.....+.|+|+.|+|||++|+.+++. ...-...+.++++.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~ 626 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 626 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTT
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechh
Confidence 3578888888877766431 112358999999999999999999988 22222344555554
No 242
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.42 E-value=0.0053 Score=61.49 Aligned_cols=43 Identities=30% Similarity=0.250 Sum_probs=33.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQ 139 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~ 139 (977)
.+++|+|.+|+||||||..++.. .-..++|++....++..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~--~~~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLL--SGKKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH--HCSEEEEEESSCCCCHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH--cCCcEEEEECCCCCCHHHHH
Confidence 49999999999999999999872 23578888887766665544
No 243
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.41 E-value=0.0019 Score=67.25 Aligned_cols=69 Identities=19% Similarity=0.187 Sum_probs=42.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEe--CCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRV--TQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRV 172 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~--~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~ 172 (977)
+++.|+|++|+||||||.+++.. .-..++|+++ .+..+.. . .........+.+.+.+ .+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~--~G~~VlyIs~~~eE~v~~~--------------~-~~le~~l~~i~~~l~~-~~- 184 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA--LGGKDKYATVRFGEPLSGY--------------N-TDFNVFVDDIARAMLQ-HR- 184 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH--HHTTSCCEEEEBSCSSTTC--------------B-CCHHHHHHHHHHHHHH-CS-
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh--CCCCEEEEEecchhhhhhh--------------h-cCHHHHHHHHHHHHhh-CC-
Confidence 47789999999999999999876 1123456666 3221110 0 1122233344455543 34
Q ss_pred EEEecCcccc
Q 002037 173 LIILDDLWGK 182 (977)
Q Consensus 173 LlvlDdv~~~ 182 (977)
++|+|++...
T Consensus 185 LLVIDsI~aL 194 (331)
T 2vhj_A 185 VIVIDSLKNV 194 (331)
T ss_dssp EEEEECCTTT
T ss_pred EEEEeccccc
Confidence 9999998654
No 244
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.39 E-value=0.008 Score=69.02 Aligned_cols=151 Identities=17% Similarity=0.221 Sum_probs=72.1
Q ss_pred ccchHHHHHHHHHHhh----cCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLK----DNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLN 147 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~----~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~ 147 (977)
++|-++..+.+.+.+. .....-.++.++|++|+||||+|+.++.. ...|. -+.++...+...+........+
T Consensus 83 i~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~---~i~~~~~~~~~~~~g~~~~~ig 159 (543)
T 3m6a_A 83 HHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV---RISLGGVRDESEIRGHRRTYVG 159 (543)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE---EECCCC----------------
T ss_pred hccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE---EEEecccchhhhhhhHHHHHhc
Confidence 4555555555443221 11112458999999999999999999988 43332 2333332221111111111111
Q ss_pred hccccchHHHHHHHHHHHHH--ccceEEEEecCcccccc------ccccccCCCCC---------------CCCeEEEEe
Q 002037 148 TELEGDVEVLRAAFLSERLK--RQKRVLIILDDLWGKLD------LAVVGIPYGEE---------------HKGCKIILT 204 (977)
Q Consensus 148 ~~~~~~~~~~~~~~l~~~l~--~~~~~LlvlDdv~~~~~------~~~l~~~~~~~---------------~~gs~iivT 204 (977)
.. ...+.+.+. ....-+++||+++.... ...+...+... .....||.|
T Consensus 160 ~~---------~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~t 230 (543)
T 3m6a_A 160 AM---------PGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIAT 230 (543)
T ss_dssp -------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEE
T ss_pred cC---------chHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEec
Confidence 10 011111111 11333888999875421 12222211110 034567777
Q ss_pred cCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhc
Q 002037 205 SRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKA 238 (977)
Q Consensus 205 tR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 238 (977)
|..... ...+ ..+.+++++.++-.+++.++.
T Consensus 231 tN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 231 ANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp CSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred cCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 765432 2323 368899999988888887654
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.38 E-value=0.017 Score=63.34 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...+.++|+.|+|||++|+.+++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999987
No 246
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.34 E-value=0.02 Score=69.02 Aligned_cols=151 Identities=13% Similarity=0.162 Sum_probs=80.9
Q ss_pred cccccchHHHHHHHHHHhhc-----------CCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHH
Q 002037 70 FVPLKSALEVIKSVMKLLKD-----------NSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKR 137 (977)
Q Consensus 70 ~~~~~gr~~~~~~l~~~l~~-----------~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~ 137 (977)
+..+.|.++.++++.+++.. .-.....|.|+|++|+||||||+.+++. ...| +.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~~~~------ 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLINGPE------ 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEEHHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEEchH------
Confidence 44566766666666665532 1122457999999999999999999987 4333 3333211
Q ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCCCCCCCeEE
Q 002037 138 VQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYGEEHKGCKI 201 (977)
Q Consensus 138 ~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~~~~~gs~i 201 (977)
+.....+.. ......+.+......+.++++|+++.... +..+..... ...+..|
T Consensus 274 --------l~~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~v~v 343 (806)
T 1ypw_A 274 --------IMSKLAGES-ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAHVIV 343 (806)
T ss_dssp --------HSSSSTTHH-HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSCCEE
T ss_pred --------hhhhhhhhH-HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-ccccEEE
Confidence 000001111 11122222222235678999999954311 001111111 1234456
Q ss_pred EEecCChHHH-hhc----cCCceEEccCCCHHHHHHHHHHhcC
Q 002037 202 ILTSRFKEVC-DEM----ESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 202 ivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
|.||...+-. ..+ .-...+.+...+.++-.+++..++.
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 6666554321 111 1224577888899999999987765
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.32 E-value=0.0089 Score=63.91 Aligned_cols=84 Identities=20% Similarity=0.243 Sum_probs=53.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERL 166 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 166 (977)
-.++.|+|++|+||||||.+++.. ...=..++|++....++.. .++.++...+ ..+.......+...+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~ 135 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDELV 135 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHHHh
Confidence 359999999999999999999987 3222457899887777654 4455543221 112222333344334
Q ss_pred HccceEEEEecCcccc
Q 002037 167 KRQKRVLIILDDLWGK 182 (977)
Q Consensus 167 ~~~~~~LlvlDdv~~~ 182 (977)
+..+.-++|+|.+...
T Consensus 136 ~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 136 RSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HTSCCSEEEEECTTTC
T ss_pred hhcCCCeEEehHhhhh
Confidence 4455668999987654
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.31 E-value=0.018 Score=61.90 Aligned_cols=87 Identities=22% Similarity=0.381 Sum_probs=54.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cC------CCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc-------------cc
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EI------PFDKVIFVRVTQTPDVKRVQDEIARFLNTELE-------------GD 153 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~------~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-------------~~ 153 (977)
-.++.|+|.+|+||||||.+++.. .. .-..++|++....++..++.. +++.++.... ..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~e 200 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTSE 200 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCHH
Confidence 459999999999999999998876 22 235789999988877766544 3444433210 01
Q ss_pred hHHHHHHHHHHHHHc--cceEEEEecCccc
Q 002037 154 VEVLRAAFLSERLKR--QKRVLIILDDLWG 181 (977)
Q Consensus 154 ~~~~~~~~l~~~l~~--~~~~LlvlDdv~~ 181 (977)
........+...+.+ .+.-+||+|.+..
T Consensus 201 ~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 201 HQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp HHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 111222233344443 4566888887754
No 249
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.30 E-value=0.0042 Score=62.87 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
.+++|+|.+|+|||||++.++.. ...-..++|+....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~ 61 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE 61 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence 48999999999999999999866 22223566766543
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.25 E-value=0.0053 Score=64.87 Aligned_cols=55 Identities=16% Similarity=0.300 Sum_probs=37.5
Q ss_pred chHHHHHHHHHHhhcCCC-ceeEEEEEcCCCChHHHHHHHHHhh-c-CCCCEEEEEEe
Q 002037 75 SALEVIKSVMKLLKDNSI-SINIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRV 129 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~-~~~vi~I~G~gGiGKTtLa~~v~~~-~-~~f~~~~wv~~ 129 (977)
++...++.+.+++..... ....+.|+|+.|+|||+||+.+++. . ..-..++++++
T Consensus 132 ~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 132 SRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp HHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred HHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 344555556666654321 1458899999999999999999987 4 44344566654
No 251
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.14 E-value=0.027 Score=60.67 Aligned_cols=154 Identities=10% Similarity=-0.054 Sum_probs=95.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccce
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKR 171 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~ 171 (977)
.++..++|..|.||++.|+.+.+. ...|+....+.+....++.++...+.. . -+ -+++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~------------------pl-f~~~ 77 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQA-M------------------SL-FASR 77 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHH-H------------------HH-CCSC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcC-c------------------CC-ccCC
Confidence 569999999999999999999887 345543323334444455444332211 0 01 2567
Q ss_pred EEEEecCccc-c--ccccccccCCCCCCCCeEEEEecCC-------hHHHhhc-cCCceEEccCCCHHHHHHHHHHhcCC
Q 002037 172 VLIILDDLWG-K--LDLAVVGIPYGEEHKGCKIILTSRF-------KEVCDEM-ESTNYVQVEELTDEDRLILFKKKAGL 240 (977)
Q Consensus 172 ~LlvlDdv~~-~--~~~~~l~~~~~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~~~ 240 (977)
-++|+|+++. . ..++++...+....+++.+|++|.. ..+...+ .....++..+++.++..+.+.+.+..
T Consensus 78 kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~~~ 157 (343)
T 1jr3_D 78 QTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQ 157 (343)
T ss_dssp EEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHHHH
Confidence 7888999865 3 3344444333333457777766532 2343332 23357899999999998888777641
Q ss_pred CCCChhhHHHHHHHHHHhCCChhHHHHH
Q 002037 241 PEGTKAFDRAAEEVVRQCGKLPNAIVII 268 (977)
Q Consensus 241 ~~~~~~~~~~~~~i~~~~~glPLai~~~ 268 (977)
. .-.-..+.+..+++.++|-..++...
T Consensus 158 ~-g~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 158 L-NLELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp T-TCEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred c-CCCCCHHHHHHHHHHhchHHHHHHHH
Confidence 1 12233467888899999987766553
No 252
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.14 E-value=0.0031 Score=64.73 Aligned_cols=36 Identities=25% Similarity=0.313 Sum_probs=26.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-c-CCCCEEEEEEeC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRVT 130 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~-~~f~~~~wv~~~ 130 (977)
.+++|+|++|+|||||++.++.. . ..-..++++...
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~ 68 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEcc
Confidence 39999999999999999998844 2 233455666543
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.07 E-value=0.013 Score=60.59 Aligned_cols=82 Identities=11% Similarity=0.067 Sum_probs=54.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cCC--CCEEEEEEeCCCCCHHHHHHHHHHHhhhcccc------chHHHHHHHHHHH-
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EIP--FDKVIFVRVTQTPDVKRVQDEIARFLNTELEG------DVEVLRAAFLSER- 165 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~~--f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~- 165 (977)
++-|.|.+|+||||||.+++.. .+. =..++||+....++.. .+++++...+. .+.+.....+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 7899999999999999998877 322 3578999988887754 26666654321 1112220222233
Q ss_pred --HHccceEEEEecCcccc
Q 002037 166 --LKRQKRVLIILDDLWGK 182 (977)
Q Consensus 166 --l~~~~~~LlvlDdv~~~ 182 (977)
++.++.-++|+|-|...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 34567889999998654
No 254
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.98 E-value=0.013 Score=62.90 Aligned_cols=83 Identities=17% Similarity=0.247 Sum_probs=52.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERLK 167 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l~ 167 (977)
+++.|+|.+|+||||||.+++.. ...=..++|++....++.. .++.++.... ..+.......+.....
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 49999999999999999999876 3223468899988776643 2445543221 1112222222333333
Q ss_pred ccceEEEEecCcccc
Q 002037 168 RQKRVLIILDDLWGK 182 (977)
Q Consensus 168 ~~~~~LlvlDdv~~~ 182 (977)
..+.-+||+|.+...
T Consensus 137 ~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 137 SGALDIIVIDSVAAL 151 (349)
T ss_dssp TTCCSEEEEECGGGC
T ss_pred cCCCCEEEEcChHhh
Confidence 345679999998654
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.96 E-value=0.027 Score=61.36 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=53.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cC-----CCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc-----------cc--h
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EI-----PFDKVIFVRVTQTPDVKRVQDEIARFLNTELE-----------GD--V 154 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~-----~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~-----------~~--~ 154 (977)
.++.|+|.+|+|||||+..++-. .. .-..++|++....++..++. .+++.++.... .. .
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~gl~~~~vleni~~~~~~~~~~ 257 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFGLDPDDALNNVAYARAYNADH 257 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcCCChHhHhhcEEEeccCChHH
Confidence 49999999999999999977633 11 23578999887766655543 35555543211 00 1
Q ss_pred HHHHHHHHHHHHHccceEEEEecCcccc
Q 002037 155 EVLRAAFLSERLKRQKRVLIILDDLWGK 182 (977)
Q Consensus 155 ~~~~~~~l~~~l~~~~~~LlvlDdv~~~ 182 (977)
.......+...+...+.-+||+|.+...
T Consensus 258 ~~~~l~~~~~~l~~~~~~llVIDs~t~~ 285 (400)
T 3lda_A 258 QLRLLDAAAQMMSESRFSLIVVDSVMAL 285 (400)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETGGGG
T ss_pred HHHHHHHHHHHHHhcCCceEEecchhhh
Confidence 1122233344444456788999987543
No 256
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.94 E-value=0.037 Score=55.64 Aligned_cols=42 Identities=26% Similarity=0.345 Sum_probs=31.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cC------CCCEEEEEEeCCCCCHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EI------PFDKVIFVRVTQTPDVK 136 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~------~f~~~~wv~~~~~~~~~ 136 (977)
.+++|+|+.|+|||||++.++.. .. .-..++|+.-.......
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 49999999999999999999874 11 23568888766544433
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.92 E-value=0.015 Score=62.40 Aligned_cols=83 Identities=22% Similarity=0.278 Sum_probs=51.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcccc------chHHHHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG------DVEVLRAAFLSERLK 167 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~~~l~ 167 (977)
+++.|.|.+|+||||||.+++.. ...-..++|++....++... ++.++..... .........+....+
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 49999999999999999998877 22224689999988776432 4444432211 111222222222223
Q ss_pred ccceEEEEecCcccc
Q 002037 168 RQKRVLIILDDLWGK 182 (977)
Q Consensus 168 ~~~~~LlvlDdv~~~ 182 (977)
..+.-+||+|.+...
T Consensus 139 ~~~~~lVVIDsl~~l 153 (356)
T 1u94_A 139 SGAVDVIVVDSVAAL 153 (356)
T ss_dssp HTCCSEEEEECGGGC
T ss_pred ccCCCEEEEcCHHHh
Confidence 345568999987643
No 258
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.87 E-value=0.025 Score=60.39 Aligned_cols=87 Identities=18% Similarity=0.252 Sum_probs=54.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh---cC---------CC-----CEEEEEEeCCCCCHHHHHHHHHHHhhhccc-----
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ---EI---------PF-----DKVIFVRVTQTPDVKRVQDEIARFLNTELE----- 151 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~---~~---------~f-----~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~----- 151 (977)
-.++.|+|.+|+||||+|.+++.. .. .. ..++|++....++..++.+ +++.++....
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~ 176 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLDN 176 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhcC
Confidence 359999999999999999998865 11 11 5789999988887776654 3444443211
Q ss_pred ------cchH--HHHHHHHHHHHHc-cceEEEEecCccc
Q 002037 152 ------GDVE--VLRAAFLSERLKR-QKRVLIILDDLWG 181 (977)
Q Consensus 152 ------~~~~--~~~~~~l~~~l~~-~~~~LlvlDdv~~ 181 (977)
...+ ......+...+.+ .+.-+||+|.+..
T Consensus 177 l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 215 (322)
T 2i1q_A 177 TFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTS 215 (322)
T ss_dssp EEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 0111 1122334444444 4566888888753
No 259
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.73 E-value=0.018 Score=61.97 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=52.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERLK 167 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l~ 167 (977)
.++.|.|.+|+||||||.+++.. ...-..++|++....++.. .++.++.... ..+.+.....+....+
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 48899999999999999998877 2223478999998877654 2444443211 1122223333333333
Q ss_pred ccceEEEEecCcccc
Q 002037 168 RQKRVLIILDDLWGK 182 (977)
Q Consensus 168 ~~~~~LlvlDdv~~~ 182 (977)
..+.-+||+|.+...
T Consensus 150 ~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 150 SGAIDVVVVDSVAAL 164 (366)
T ss_dssp TTCCSEEEEECTTTC
T ss_pred cCCCCEEEEeChHHh
Confidence 345668999988643
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.63 E-value=0.01 Score=58.80 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 78 EVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 78 ~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.++++.+.+......-.+|+|+|+.|+|||||++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4566666666543223579999999999999999999877
No 261
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.55 E-value=0.014 Score=57.41 Aligned_cols=43 Identities=23% Similarity=0.252 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHhhcCC-CceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 75 SALEVIKSVMKLLKDNS-ISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~-~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|.+.++++.+.+.... ....+|+|.|..|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35667777887776432 23579999999999999999999876
No 262
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.34 E-value=0.073 Score=56.33 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=36.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIARF 145 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 145 (977)
.++.|.|.+|+||||+|.+++.. ... ..++|++.. .+..++...+...
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g-~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDND-DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTT-CEEEEEESS--SCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEECC--CCHHHHHHHHHHH
Confidence 39999999999999999999877 333 678888766 4556666665543
No 263
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.07 E-value=0.072 Score=57.18 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=32.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCC--C----CEEEEEEeCCCCCHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIP--F----DKVIFVRVTQTPDVKR 137 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~--f----~~~~wv~~~~~~~~~~ 137 (977)
-.++.|+|..|+|||||+..++.. ... . ..++|++....+...+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 359999999999999999999876 211 1 3458998776654443
No 264
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.07 E-value=0.015 Score=61.79 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=27.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQT 132 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~~ 132 (977)
..++|+|..|+|||||++.+.+. .++-+ .++++-+.+.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER 215 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDER 215 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSC
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCC
Confidence 48999999999999999999876 22222 2345666654
No 265
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.97 E-value=0.052 Score=59.71 Aligned_cols=86 Identities=17% Similarity=0.358 Sum_probs=49.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cC-CCCEEEEEEeCCCC-CHHHHHHHHHHHhhh--------ccccchHH-----HHH
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EI-PFDKVIFVRVTQTP-DVKRVQDEIARFLNT--------ELEGDVEV-----LRA 159 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~-~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~~~~-----~~~ 159 (977)
.++|+|..|+||||||..+... .. .-+.++++-+.+.. ...++.+++...-.. ........ ...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~~~ 232 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVALTG 232 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHHHH
Confidence 6899999999999999999887 32 33455666666554 344454444332000 00000000 011
Q ss_pred HHHHHHHH--ccceEEEEecCccc
Q 002037 160 AFLSERLK--RQKRVLIILDDLWG 181 (977)
Q Consensus 160 ~~l~~~l~--~~~~~LlvlDdv~~ 181 (977)
..+.+++. +++++|+++||+..
T Consensus 233 ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 233 LTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHhcCCcEEEEeccHHH
Confidence 12333333 48999999999843
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.95 E-value=0.013 Score=56.35 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999987
No 267
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.90 E-value=0.036 Score=56.17 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=29.3
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...-+..++....+....|.++|++|+|||.+|.++++.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 344456666654233457999999999999999999986
No 268
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.86 E-value=0.014 Score=55.78 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999887
No 269
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.81 E-value=0.03 Score=58.31 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=23.3
Q ss_pred CceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 92 ISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 92 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34679999999999999999998877
No 270
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.63 E-value=0.041 Score=52.80 Aligned_cols=110 Identities=20% Similarity=0.108 Sum_probs=57.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCC---CCHHHHHHHHHHHhhhc---------cccch---H--
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT---PDVKRVQDEIARFLNTE---------LEGDV---E-- 155 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~---~~~~~~~~~i~~~l~~~---------~~~~~---~-- 155 (977)
..|.|++-.|.||||.|-.++-+ ...+ .+.++..-+. .....++. .+... ..... +
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~-rV~~vQF~Kg~~~~gE~~~l~----~L~v~~~~~g~gf~~~~~~~~~~~~ 103 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK-NVGVVQFIKGTWPNGERNLLE----PHGVEFQVMATGFTWETQNREADTA 103 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC-CEEEEESSCCSSCCHHHHHHG----GGTCEEEECCTTCCCCGGGHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC-eEEEEEeeCCCCCccHHHHHH----hCCcEEEEcccccccCCCCcHHHHH
Confidence 35666666679999999988887 3333 3445543332 22233333 33200 00000 1
Q ss_pred --HHHHHHHHHHHHccceEEEEecCcccc-----ccccccccCCCCCCCCeEEEEecCChH
Q 002037 156 --VLRAAFLSERLKRQKRVLIILDDLWGK-----LDLAVVGIPYGEEHKGCKIILTSRFKE 209 (977)
Q Consensus 156 --~~~~~~l~~~l~~~~~~LlvlDdv~~~-----~~~~~l~~~~~~~~~gs~iivTtR~~~ 209 (977)
.......++.+..++-=|||||++... ...+.+...+........||+|+|...
T Consensus 104 ~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 104 ACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence 111223334444455569999998543 222222222223345667999999874
No 271
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.60 E-value=0.086 Score=57.62 Aligned_cols=123 Identities=13% Similarity=0.203 Sum_probs=66.4
Q ss_pred CCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCCCC--CccccCCCCccEE
Q 002037 440 KCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHLND--ASLIREFGELEVL 516 (977)
Q Consensus 440 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l~~--~~~i~~l~~L~~L 516 (977)
.+..+..+.+..+ +..+....|.++..|+.+.+..+ +..+.. .+..+..|+.+.+..+ +.. ...+..+.+|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 4455555555432 33444455566666666666544 444433 4555666666666433 222 2344556666666
Q ss_pred EccCCCCcccCcc-ccCCCCCCEEEcCCCCCCCccChhhhhcCccccEEEcc
Q 002037 517 ILKGSRIVELPNG-IGTVSNLKLLDLSNNLFLQVIPPNVISKLSQLEELYVG 567 (977)
Q Consensus 517 ~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~i~~L~~L~~L~l~ 567 (977)
.+.++.++.++.. +.++.+|+.+.+..+ +..+...++.++++|+.+.+.
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence 6666666665543 556666666666543 344555556666666665543
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.59 E-value=0.018 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+||||+++.++..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 58999999999999999999886
No 273
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.58 E-value=0.024 Score=60.84 Aligned_cols=42 Identities=17% Similarity=0.147 Sum_probs=35.8
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+++.++.+...+..+. -+.++|++|+|||++|+.+++.
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~----~vll~G~pGtGKT~la~~la~~ 69 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG----HILLEGVPGLAKTLSVNTLAKT 69 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC----CEEEESCCCHHHHHHHHHHHHH
T ss_pred ceeCcHHHHHHHHHHHHcCC----eEEEECCCCCcHHHHHHHHHHH
Confidence 46688888888888777654 6889999999999999999987
No 274
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.54 E-value=0.066 Score=54.38 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=28.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
.++.|.|.+|+||||+|.+++.. ...=..++|++...
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 38999999999999999988766 22224678887554
No 275
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.54 E-value=0.22 Score=52.13 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhcCC------CceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 77 LEVIKSVMKLLKDNS------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 77 ~~~~~~l~~~l~~~~------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
....+++.+.+.... ....+|+|+|.+|+||||++..++.. ...-..+.++...
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 334455556554321 23579999999999999999999987 3222345555543
No 276
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.53 E-value=0.31 Score=51.46 Aligned_cols=54 Identities=19% Similarity=0.127 Sum_probs=33.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC-CCHHHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT-PDVKRVQDEIARFLN 147 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~-~~~~~~~~~i~~~l~ 147 (977)
..+++|+|+.|+||||+++.++.. ...-..+.++...-. ....+-++...+.++
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~g 184 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIG 184 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcC
Confidence 579999999999999999999987 222223444433321 223333444555555
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.53 E-value=0.017 Score=55.32 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQV 114 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v 114 (977)
.+|+|.|+.|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.51 E-value=0.018 Score=56.44 Aligned_cols=24 Identities=38% Similarity=0.355 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|+|+.|+||||+|+.++..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999987
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.44 E-value=0.02 Score=55.13 Aligned_cols=23 Identities=13% Similarity=0.499 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999876
No 280
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.41 E-value=0.03 Score=60.90 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHhh-------------cCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLK-------------DNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~-------------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|.+..++.+...+. ........|.++|++|+|||++|+.+++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4677888887777662 11112457899999999999999999988
No 281
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.39 E-value=0.017 Score=55.11 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|+|+.|+||||+|+.++..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999887
No 282
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.39 E-value=0.095 Score=57.73 Aligned_cols=87 Identities=20% Similarity=0.363 Sum_probs=56.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc--------c----c--cchH--
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE--------L----E--GDVE-- 155 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~----~--~~~~-- 155 (977)
+.++|.|..|+|||+|+..+.+. +.+-+.++++-+.+.. .+.++.+++...-... . . +...
T Consensus 166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtvvV~~t~d~p~~~ 245 (498)
T 1fx0_B 166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVALVYGQMNEPPGA 245 (498)
T ss_dssp CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEEEEEECTTSCHHH
T ss_pred CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceEEEEeCCCCCHHH
Confidence 37899999999999999999887 4456788888888765 4556666665431111 0 0 0110
Q ss_pred ----HHHHHHHHHHHH--ccceEEEEecCccc
Q 002037 156 ----VLRAAFLSERLK--RQKRVLIILDDLWG 181 (977)
Q Consensus 156 ----~~~~~~l~~~l~--~~~~~LlvlDdv~~ 181 (977)
...+-.+-+++. +++.+|+++||+..
T Consensus 246 R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 246 RMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp HTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111223334454 48999999999853
No 283
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.39 E-value=0.058 Score=69.82 Aligned_cols=83 Identities=22% Similarity=0.256 Sum_probs=56.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcc------ccchHHHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTEL------EGDVEVLRAAFLSERL 166 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~------~~~~~~~~~~~l~~~l 166 (977)
-+.|.|+|++|+|||+||.++... ...=..++|+++...++... ++.++.+. .....+.....+....
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv 1501 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1501 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHHHHH
Confidence 459999999999999999999888 43334678888888777665 44444211 1112223344444444
Q ss_pred HccceEEEEecCccc
Q 002037 167 KRQKRVLIILDDLWG 181 (977)
Q Consensus 167 ~~~~~~LlvlDdv~~ 181 (977)
++.+.-+||+|.+..
T Consensus 1502 r~~~~~lVVIDsi~a 1516 (2050)
T 3cmu_A 1502 RSGAVDVIVVDSVAA 1516 (2050)
T ss_dssp HHTCCSEEEESCGGG
T ss_pred hcCCCCEEEEcChhH
Confidence 556788999999953
No 284
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.35 E-value=0.023 Score=54.61 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 285
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.34 E-value=0.031 Score=62.92 Aligned_cols=42 Identities=14% Similarity=0.170 Sum_probs=36.4
Q ss_pred cccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 72 PLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 72 ~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+++.++.+...+..+. -|.|+|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~~----~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC----EEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcCC----eeEeecCchHHHHHHHHHHHHH
Confidence 36788888888888777765 7899999999999999999987
No 286
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.33 E-value=0.021 Score=55.18 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+.|.|+|+.|+||||+|+.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999887
No 287
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.33 E-value=0.14 Score=56.08 Aligned_cols=87 Identities=18% Similarity=0.369 Sum_probs=55.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc--------------cccchH--
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE--------------LEGDVE-- 155 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------------~~~~~~-- 155 (977)
+.++|.|..|+|||+|+.++.+. +.+-+.++++-+.+.. .+.++.+++...-... .+....
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtvvV~~t~d~p~~~r 233 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVYGQMNEPPGAR 233 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEEEEEECTTSCHHHH
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEEEEEECCCCCHHHH
Confidence 37999999999999999999887 4455777888787654 4556666665531111 001100
Q ss_pred ---HHHHHHHHHHHH--ccceEEEEecCccc
Q 002037 156 ---VLRAAFLSERLK--RQKRVLIILDDLWG 181 (977)
Q Consensus 156 ---~~~~~~l~~~l~--~~~~~LlvlDdv~~ 181 (977)
...+-.+-+++. .++.+|+++||+..
T Consensus 234 ~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 234 ARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111122334443 48999999999854
No 288
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.27 E-value=0.16 Score=55.79 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.++|.+|+||||++..++..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH
Confidence 679999999999999999998876
No 289
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.26 E-value=0.023 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...+|+|.|+.|+||||+|+.++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999999887
No 290
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.19 E-value=0.084 Score=55.12 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=27.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c-CCCCEEEEEEeC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E-IPFDKVIFVRVT 130 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~-~~f~~~~wv~~~ 130 (977)
..+++|+|.+|+||||++..++.. . ..=..+..+...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 469999999999999999999877 2 222245555544
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.18 E-value=0.026 Score=55.39 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|+.|+||||+|+.++..
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999999999987
No 292
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.11 E-value=0.026 Score=61.06 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=35.2
Q ss_pred CCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 67 TPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 67 ~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...+..++|.+..+..+........ ..-+.|+|..|+|||++|+.+++.
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred CCCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHh
Confidence 3456678888876665444433222 234899999999999999999987
No 293
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.05 E-value=0.051 Score=54.38 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+.+...+.... ..+|+|+|.+|+|||||+..+...
T Consensus 25 ~a~~~r~~~~~~~--~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 25 LADKNRKLLNKHG--VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHTT--CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344444444444 789999999999999999999877
No 294
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.04 E-value=0.027 Score=53.88 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999877
No 295
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.01 E-value=0.16 Score=55.69 Aligned_cols=37 Identities=30% Similarity=0.144 Sum_probs=27.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
.++|+++|.+|+||||++..++.. ...=..+..++..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 679999999999999999999877 2222234445443
No 296
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.00 E-value=0.23 Score=51.81 Aligned_cols=37 Identities=27% Similarity=0.145 Sum_probs=28.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
..+++++|.+|+||||++..++.. ...-..+.+++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 569999999999999999999877 3222345666554
No 297
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.98 E-value=0.027 Score=55.20 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|+.|+||||+|+.++..
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 459999999999999999999876
No 298
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.98 E-value=0.03 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 299
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.98 E-value=0.2 Score=52.95 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=40.6
Q ss_pred HHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHH
Q 002037 79 VIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARF 145 (977)
Q Consensus 79 ~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 145 (977)
.++++..-+..++ ++.|.|.+|+||||+|..++.. ...=..++|++.. .+..++...+...
T Consensus 35 ~LD~~~gGl~~G~----LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE--ms~~ql~~Rlls~ 96 (338)
T 4a1f_A 35 QLDNYTSGFNKGS----LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE--MSAEQLALRALSD 96 (338)
T ss_dssp HHHHHHCSBCTTC----EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS--SCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCc----EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC--CCHHHHHHHHHHH
Confidence 3455543333344 9999999999999999999887 2222467777664 4556666665443
No 300
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.97 E-value=0.029 Score=54.55 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999987
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.97 E-value=0.022 Score=56.05 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999877
No 302
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.95 E-value=0.087 Score=62.46 Aligned_cols=151 Identities=14% Similarity=0.214 Sum_probs=75.3
Q ss_pred ccccchHHHHHHHHHHhhc---C--------CCceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHH
Q 002037 71 VPLKSALEVIKSVMKLLKD---N--------SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRV 138 (977)
Q Consensus 71 ~~~~gr~~~~~~l~~~l~~---~--------~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~ 138 (977)
..+.|-++.++++.+.+.- . -...+-|.++|++|.|||.+|+++++. ...| +.++. ..
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f-----~~v~~----~~- 546 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF-----ISIKG----PE- 546 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE-----EECCH----HH-
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce-----EEecc----ch-
Confidence 3455556666665554321 1 112456889999999999999999998 3332 23321 11
Q ss_pred HHHHHHHhhhccccchHHHHHHHHHHHHHccceEEEEecCcccccc----------------ccccccCCC--CCCCCeE
Q 002037 139 QDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLIILDDLWGKLD----------------LAVVGIPYG--EEHKGCK 200 (977)
Q Consensus 139 ~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~LlvlDdv~~~~~----------------~~~l~~~~~--~~~~gs~ 200 (977)
+ +. ...+.++ .....+.+..++..+.+|+||+++.... ..++...+. ....+--
T Consensus 547 ---l---~s-~~vGese-~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~ 618 (806)
T 3cf2_A 547 ---L---LT-MWFGESE-ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVF 618 (806)
T ss_dssp ---H---HT-TTCSSCH-HHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEE
T ss_pred ---h---hc-cccchHH-HHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 1 11 1111222 2233333444456789999999975310 011111111 1123334
Q ss_pred EEEecCChHH-----HhhccCCceEEccCCCHHHHHHHHHHhcC
Q 002037 201 IILTSRFKEV-----CDEMESTNYVQVEELTDEDRLILFKKKAG 239 (977)
Q Consensus 201 iivTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~lf~~~~~ 239 (977)
||-||...+. .+.-.-+..+.++.-+.++-.++|+.+..
T Consensus 619 vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~ 662 (806)
T 3cf2_A 619 IIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp EECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSS
T ss_pred EEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhc
Confidence 4546654433 22113346788877777777788877664
No 303
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.95 E-value=0.18 Score=56.30 Aligned_cols=48 Identities=8% Similarity=-0.007 Sum_probs=35.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
.++.|.|.+|+||||+|..++.. ...=..++|++... +..++...+..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~--~~~~l~~R~~~ 250 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM--PAAQLTLRMMC 250 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS--CHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC--CHHHHHHHHHH
Confidence 49999999999999999999887 32224678877653 45566665543
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.94 E-value=0.031 Score=54.27 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+||||+++.+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcc
Confidence 47899999999999999999863
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.92 E-value=0.024 Score=54.91 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999876
No 306
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.90 E-value=0.031 Score=57.11 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999999887
No 307
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.90 E-value=0.058 Score=56.75 Aligned_cols=57 Identities=18% Similarity=0.148 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHhhcC--CCceeEEEEEcCCCChHHHHHHHHHhh-cCCC--CEEEEEEeCC
Q 002037 75 SALEVIKSVMKLLKDN--SISINIIGVYGSGGIGKTTLMKQVMKQ-EIPF--DKVIFVRVTQ 131 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~--~~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f--~~~~wv~~~~ 131 (977)
|....+..+...+... .....+|+|.|..|+||||+|+.+... .... ..+..+....
T Consensus 71 ~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 71 TARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred cchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 3334444444333332 234669999999999999999999876 3211 2355555443
No 308
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.89 E-value=0.046 Score=54.49 Aligned_cols=40 Identities=18% Similarity=0.362 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 76 ALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 76 r~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+..+.+.+.+.... .++|+|+|.+|+|||||+..+...
T Consensus 14 ~~~~~~~~~~~~~~~~--~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 14 NKRLAEKNREALRESG--TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHHT--CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccC--ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 3444455555444444 789999999999999999999877
No 309
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.87 E-value=0.03 Score=55.14 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 48999999999999999999876
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.84 E-value=0.03 Score=54.36 Aligned_cols=23 Identities=30% Similarity=0.474 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999987
No 311
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.81 E-value=0.027 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=23.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFD 122 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~ 122 (977)
|.|+|+|+.|+|||||++.+... ...|.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~ 30 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeE
Confidence 45889999999999999999877 44443
No 312
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.78 E-value=0.067 Score=56.52 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhc--CCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 77 LEVIKSVMKLLKD--NSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 77 ~~~~~~l~~~l~~--~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+...+++++.+.. .......|.|+|+.|+||||+++.++..
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 4445555555432 1123667999999999999999999887
No 313
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.77 E-value=0.053 Score=52.36 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|.|+.|+||||+|+.++..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999987
No 314
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.76 E-value=0.031 Score=55.19 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|+.|+||||+++.+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 358999999999999999999887
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.76 E-value=0.036 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 316
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.76 E-value=0.027 Score=54.17 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|.|+|+.|+||||+|+.++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 317
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.75 E-value=0.058 Score=54.72 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+.+.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999876
No 318
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.75 E-value=0.027 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.407 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.|.|.|+.|+||||+|+.++..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999999887
No 319
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.72 E-value=0.36 Score=53.19 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcCC-------CceeEEEEEcCCCChHHHHHHHHHhh-cCC-CCEEEEEEeCC
Q 002037 79 VIKSVMKLLKDNS-------ISINIIGVYGSGGIGKTTLMKQVMKQ-EIP-FDKVIFVRVTQ 131 (977)
Q Consensus 79 ~~~~l~~~l~~~~-------~~~~vi~I~G~gGiGKTtLa~~v~~~-~~~-f~~~~wv~~~~ 131 (977)
..+++.+.+.... ...++|.++|.+|+||||+|..++.. ... =..+.-+++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3455666654321 23679999999999999999999877 322 23455565543
No 320
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.72 E-value=0.064 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.|.|++|+||||+|+.+...
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999876
No 321
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.71 E-value=0.031 Score=53.21 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=18.9
Q ss_pred eEEEEEcCCCChHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVM 115 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~ 115 (977)
.+++|+|+.|+|||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 489999999999999999654
No 322
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.69 E-value=0.096 Score=61.08 Aligned_cols=49 Identities=12% Similarity=0.203 Sum_probs=41.4
Q ss_pred CCCCCcccccchHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 65 IPTPEFVPLKSALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 65 ~~~~~~~~~~gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+...+..++|.+..++.+...+..+. .+.|+|+.|+||||+|+.++..
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~~g~----~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAANQKR----HVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHHTTC----CEEEECCTTSSHHHHHHHHHHT
T ss_pred ccccccceEECchhhHhhccccccCCC----EEEEEeCCCCCHHHHHHHHhcc
Confidence 344556678899999888888777665 8999999999999999999988
No 323
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.68 E-value=0.034 Score=58.60 Aligned_cols=38 Identities=29% Similarity=0.499 Sum_probs=28.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQ 131 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~ 131 (977)
.+||+|.|-|||||||.|..++-- ...=..+.-|++..
T Consensus 48 aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 48 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 789999999999999999887766 22222466677664
No 324
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=93.65 E-value=0.046 Score=54.98 Aligned_cols=33 Identities=18% Similarity=0.516 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.+..-.....+.+++
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI 64 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 389999999999999999998875555666666
No 325
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.63 E-value=0.035 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|+|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999875
No 326
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.62 E-value=0.053 Score=54.68 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=27.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 589999999999999999999874444566655
No 327
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.58 E-value=0.035 Score=54.59 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
.+|+|+|+.|+||||+|+.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 328
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.56 E-value=0.036 Score=54.49 Aligned_cols=22 Identities=32% Similarity=0.669 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|.|+.|+||||+|+.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999987
No 329
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.55 E-value=0.03 Score=55.09 Aligned_cols=24 Identities=42% Similarity=0.700 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+|+|+.|+||||+++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999887
No 330
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=93.52 E-value=0.05 Score=54.32 Aligned_cols=32 Identities=25% Similarity=0.523 Sum_probs=26.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 89999999999999999998874455566665
No 331
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.50 E-value=0.1 Score=46.72 Aligned_cols=35 Identities=31% Similarity=0.507 Sum_probs=19.2
Q ss_pred CccEEEccCCcCCCCCC-CcccCCCCCeEecCCCCC
Q 002037 467 EIKNLDLSSTNISSLAP-SLPCLEKLRSLHLENTHL 501 (977)
Q Consensus 467 ~Lr~L~l~~~~~~~lp~-~~~~l~~L~~L~L~~~~l 501 (977)
+|++|+|++|.++.+|. .+..+.+|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 45555666665555554 344555555555555543
No 332
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.49 E-value=0.044 Score=51.17 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.++..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 59999999999999999999876
No 333
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.49 E-value=0.039 Score=54.61 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|+|+.|+|||||++.+...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999886
No 334
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.48 E-value=0.032 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999999875
No 335
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.47 E-value=0.04 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 336
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.44 E-value=0.053 Score=55.87 Aligned_cols=32 Identities=25% Similarity=0.450 Sum_probs=26.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~ 67 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence 89999999999999999998874444555554
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.43 E-value=0.089 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.283 Sum_probs=21.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999987
No 338
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.42 E-value=0.045 Score=53.77 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+++.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999876
No 339
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.40 E-value=0.038 Score=54.42 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|+|+.|+||||+++.+...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 48999999999999999999876
No 340
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.39 E-value=0.031 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999886
No 341
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.39 E-value=0.15 Score=56.97 Aligned_cols=47 Identities=13% Similarity=0.217 Sum_probs=33.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
.++.|.|.+|+||||+|..++.. ...-..++|++... +..++...+.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS--CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHH
Confidence 39999999999999999999887 22223678877554 3455555543
No 342
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.38 E-value=0.042 Score=53.15 Aligned_cols=24 Identities=17% Similarity=0.502 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-++|+|+|+.|+|||||++.+...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 468999999999999999999876
No 343
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.37 E-value=0.068 Score=50.22 Aligned_cols=24 Identities=38% Similarity=0.466 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++++|.|..|+||||++..+...
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999999999887
No 344
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.37 E-value=0.045 Score=52.85 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 345
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.36 E-value=0.055 Score=55.44 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=27.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 389999999999999999998874445566665
No 346
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.35 E-value=0.046 Score=53.63 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|+|+.|+||||+|+.+...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 679999999999999999999886
No 347
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.35 E-value=0.041 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999875
No 348
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.35 E-value=0.022 Score=56.49 Aligned_cols=109 Identities=16% Similarity=0.071 Sum_probs=56.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhcccc---chHHHHHHHHHHHHHccc
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEG---DVEVLRAAFLSERLKRQK 170 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~l~~~l~~~~ 170 (977)
.++.|+|..|+||||+|..++++ ..+-..++.+...... . ....|++.++..... .........+.+.+..++
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 58899999999999999998888 3222234444333221 1 122344444432221 111122222222222234
Q ss_pred eEEEEecCcccc--ccccccccCCCCCCCCeEEEEecCChH
Q 002037 171 RVLIILDDLWGK--LDLAVVGIPYGEEHKGCKIILTSRFKE 209 (977)
Q Consensus 171 ~~LlvlDdv~~~--~~~~~l~~~~~~~~~gs~iivTtR~~~ 209 (977)
.-+||+|.+... ...+.+. .+.. .|-.||+|-++.+
T Consensus 90 ~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 90 TKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDKN 127 (223)
T ss_dssp CCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSBC
T ss_pred CCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEecccc
Confidence 559999998753 1222221 1111 2677888888543
No 349
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.34 E-value=0.045 Score=53.26 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 350
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.27 E-value=0.037 Score=52.71 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|+|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999886
No 351
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.27 E-value=1.1 Score=60.42 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=48.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHccceEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELEGDVEVLRAAFLSERLKRQKRVLI 174 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~Ll 174 (977)
+-|.++|++|+|||++|+.+......+ ..+.++.+...+...+++.+...+......... +..--..+++.++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~------~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGL------TLLPKSDIKNLVL 1340 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTE------EEEEBSSSSCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCc------cccCCCCCceEEE
Confidence 478899999999999998777663333 345677777777776666665544321100000 0000002678899
Q ss_pred EecCcc
Q 002037 175 ILDDLW 180 (977)
Q Consensus 175 vlDdv~ 180 (977)
++||+.
T Consensus 1341 FiDEin 1346 (2695)
T 4akg_A 1341 FCDEIN 1346 (2695)
T ss_dssp EEETTT
T ss_pred Eecccc
Confidence 999964
No 352
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.24 E-value=0.047 Score=53.84 Aligned_cols=24 Identities=46% Similarity=0.589 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|+|+.|+||||+|+.+...
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999999764
No 353
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.23 E-value=0.075 Score=54.28 Aligned_cols=25 Identities=32% Similarity=0.317 Sum_probs=22.6
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...+|.|+|++|+||||+|+.+...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999886
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.23 E-value=0.055 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.7
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999999876
No 355
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.22 E-value=0.048 Score=55.74 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+...
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999999886
No 356
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.22 E-value=0.052 Score=53.55 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=26.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 89999999999999999998874444566655
No 357
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.21 E-value=0.043 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 358
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.20 E-value=0.06 Score=52.91 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=23.0
Q ss_pred hhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 87 LKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 87 l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..++ +++|+|+.|+|||||++.++..
T Consensus 19 i~~Ge----~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNT----IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCS----EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCC----EEEEECCCCCCHHHHHHHHhcC
Confidence 44555 8999999999999999998864
No 359
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.20 E-value=0.061 Score=55.01 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=26.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 389999999999999999998874444566665
No 360
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.18 E-value=0.044 Score=53.56 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 361
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.15 E-value=0.05 Score=55.87 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999886
No 362
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.14 E-value=0.21 Score=52.05 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=27.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
..+++|+|.+|+||||++..++.. ...-..+.++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d 135 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 469999999999999999999987 3222345555543
No 363
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.10 E-value=0.036 Score=53.35 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=17.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999876
No 364
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.10 E-value=0.047 Score=53.82 Aligned_cols=23 Identities=17% Similarity=0.499 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.+...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 39999999999999999999876
No 365
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.09 E-value=0.064 Score=54.16 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=26.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 89999999999999999999874445566665
No 366
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.09 E-value=0.05 Score=51.45 Aligned_cols=22 Identities=23% Similarity=0.140 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999886
No 367
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.07 E-value=0.065 Score=54.56 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=25.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 389999999999999999998773333444443
No 368
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.03 E-value=0.066 Score=54.29 Aligned_cols=32 Identities=34% Similarity=0.637 Sum_probs=26.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i 68 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 68 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 89999999999999999998874444566665
No 369
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.03 E-value=0.56 Score=52.53 Aligned_cols=38 Identities=24% Similarity=0.158 Sum_probs=26.4
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeC
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVT 130 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~ 130 (977)
..++|+|+|.+|+||||++..++.. ...=..+..|+..
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3679999999999999999999876 2221234555543
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.01 E-value=0.052 Score=52.71 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 371
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.01 E-value=0.063 Score=55.05 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 70 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 89999999999999999999874444566655
No 372
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.97 E-value=0.07 Score=53.42 Aligned_cols=30 Identities=37% Similarity=0.558 Sum_probs=24.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVI 125 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~ 125 (977)
+++|+|+.|+|||||++.++.-.....+.+
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i 65 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKI 65 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEE
Confidence 899999999999999999998733333333
No 373
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.95 E-value=0.068 Score=54.61 Aligned_cols=32 Identities=19% Similarity=0.313 Sum_probs=26.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 89999999999999999998874444566655
No 374
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.94 E-value=0.15 Score=53.89 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=27.5
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEe
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 129 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~ 129 (977)
..++|+|+|.+|+||||++..++.. ...-..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3569999999999999999999887 322234555544
No 375
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=92.92 E-value=0.054 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999886
No 376
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.89 E-value=0.051 Score=55.21 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|.|+.|+||||+|+.+...
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999875
No 377
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=92.85 E-value=0.17 Score=51.37 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=31.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCCCCHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQTPDVKRVQDEI 142 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~~~~~~~~~~i 142 (977)
.++.|.|.+|+|||++|.+++.. ...-..+++++... +...+.+.+
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS--CHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC--CHHHHHHHH
Confidence 49999999999999999987654 33334566776554 344444443
No 378
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.84 E-value=0.052 Score=55.22 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|+|+.|+||||+++.++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 459999999999999999999965
No 379
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.84 E-value=0.044 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQE 118 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~ 118 (977)
.+++|+|+.|+|||||++.+....
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 489999999999999999998763
No 380
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=92.83 E-value=0.072 Score=54.84 Aligned_cols=33 Identities=18% Similarity=0.351 Sum_probs=25.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 389999999999999999998873333444444
No 381
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.80 E-value=0.055 Score=55.20 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|+|+.|+||||+++.++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 359999999999999999999866
No 382
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.80 E-value=0.17 Score=54.47 Aligned_cols=38 Identities=21% Similarity=0.352 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 80 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 80 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+++..+........+|+|+|.+|+||||++..+...
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555433334789999999999999999998876
No 383
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=92.77 E-value=0.055 Score=52.59 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999987
No 384
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.72 E-value=0.057 Score=53.57 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 49999999999999999999887
No 385
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.71 E-value=0.082 Score=52.35 Aligned_cols=30 Identities=17% Similarity=0.201 Sum_probs=25.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDK 123 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~ 123 (977)
..+|+|.|+.|+||||+|+.+... ...++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 358999999999999999999987 344554
No 386
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=92.69 E-value=0.078 Score=54.76 Aligned_cols=32 Identities=28% Similarity=0.316 Sum_probs=27.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.......+.+++
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 89999999999999999999874445566665
No 387
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=92.68 E-value=0.078 Score=54.48 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=26.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.....+.+++
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 89999999999999999998874444555554
No 388
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.67 E-value=0.061 Score=56.64 Aligned_cols=24 Identities=38% Similarity=0.432 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|.|..|+|||||++.+...
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhh
Confidence 569999999999999999999887
No 389
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.65 E-value=0.056 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.++.-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 38999999999999999999876
No 390
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.64 E-value=0.07 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..++|.|.|++|+||||.|+.+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999886
No 391
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.54 E-value=0.071 Score=53.96 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.++.-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999876
No 392
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.51 E-value=0.094 Score=50.52 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 80 IKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 80 ~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..+..++.. -+.-..+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~-iPkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKG-TPKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHT-CTTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCcccEEEEECCCCCCHHHHHHHHHHH
Confidence 3344444433 222347999999999999999999887
No 393
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.50 E-value=0.057 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998876
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.44 E-value=0.073 Score=50.97 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358899999999999999999886
No 395
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.44 E-value=0.15 Score=65.12 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=52.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERLK 167 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l~ 167 (977)
.+|.|.|.+|+||||||.+++.. ...-..++|++.....+.. .++.++.... ..+.......+.....
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql-----~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHH-----HHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 49999999999999999999888 3222368888877766543 1555553211 1122233333333333
Q ss_pred ccceEEEEecCcccc
Q 002037 168 RQKRVLIILDDLWGK 182 (977)
Q Consensus 168 ~~~~~LlvlDdv~~~ 182 (977)
..+.-+||+|.+...
T Consensus 808 ~~~~~lVVIDsLq~l 822 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAAL 822 (1706)
T ss_dssp HTCCSEEEESCSTTC
T ss_pred ccCCCEEEEechhhh
Confidence 456679999998654
No 396
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.44 E-value=0.063 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|.|+.|+||||+|+.++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 397
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.43 E-value=0.047 Score=51.67 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++++|+|..|+|||||++.+...
T Consensus 2 ~~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 2 SLILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp -CEEEEEESCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999877
No 398
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.42 E-value=0.063 Score=53.07 Aligned_cols=30 Identities=20% Similarity=0.122 Sum_probs=25.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDK 123 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~ 123 (977)
..+|+|.|+.|+||||+|+.+... ...++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 358999999999999999999987 445555
No 399
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.40 E-value=0.23 Score=54.08 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=52.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cCCCC----EEEEEEeCCCC-CHHHHHHHHHHH--hhhc-----cccchH------H
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EIPFD----KVIFVRVTQTP-DVKRVQDEIARF--LNTE-----LEGDVE------V 156 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~~f~----~~~wv~~~~~~-~~~~~~~~i~~~--l~~~-----~~~~~~------~ 156 (977)
.++|.|..|+|||+|+.++++. ..+-+ .++++-+.+.. .+.++.+++... +... ..+... .
T Consensus 153 r~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a~ 232 (465)
T 3vr4_D 153 KLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIATP 232 (465)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHHH
Confidence 5789999999999999999988 44334 66777776543 455565655442 1100 001111 1
Q ss_pred HHHHHHHHHHH--ccceEEEEecCccc
Q 002037 157 LRAAFLSERLK--RQKRVLIILDDLWG 181 (977)
Q Consensus 157 ~~~~~l~~~l~--~~~~~LlvlDdv~~ 181 (977)
..+..+-+++. .++.+|+++||+..
T Consensus 233 ~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 233 RMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 11223445554 38999999999854
No 400
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.32 E-value=0.071 Score=51.96 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999887
No 401
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.30 E-value=0.26 Score=54.66 Aligned_cols=47 Identities=17% Similarity=0.116 Sum_probs=32.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIA 143 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 143 (977)
.++.|.|.+|+||||+|.+++.. ...=..++|++.... ..++...+.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms--~~ql~~R~~ 245 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG--KKENIKRLI 245 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC--TTHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC--HHHHHHHHH
Confidence 38999999999999999999887 222236777766543 334444443
No 402
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.29 E-value=0.071 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999876
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.26 E-value=0.16 Score=53.27 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=27.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-cCCCC-EEEEEEeC
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-EIPFD-KVIFVRVT 130 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~~~f~-~~~wv~~~ 130 (977)
+++|.|.+|+|||||++.++.. ...-. .++|++..
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 9999999999999999999887 22223 56677654
No 404
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.26 E-value=0.072 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999876
No 405
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=92.19 E-value=0.075 Score=52.93 Aligned_cols=24 Identities=21% Similarity=0.238 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|.|+.|+||||+|+.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999886
No 406
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.18 E-value=0.1 Score=54.60 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+++|+|++|+||||+++.++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 469999999999999999999987
No 407
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=92.15 E-value=0.096 Score=53.04 Aligned_cols=31 Identities=26% Similarity=0.350 Sum_probs=25.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++.-.... +.+++
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~ 58 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQF 58 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEE
Confidence 89999999999999999999873333 55554
No 408
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.11 E-value=0.077 Score=52.68 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|.|+.|+||||+|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999876
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.03 E-value=0.085 Score=52.12 Aligned_cols=24 Identities=29% Similarity=0.219 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 410
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.03 E-value=0.044 Score=54.33 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7899999999999999999877
No 411
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.01 E-value=0.36 Score=52.85 Aligned_cols=36 Identities=22% Similarity=0.156 Sum_probs=27.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEe
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRV 129 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~ 129 (977)
..+++|+|.+|+||||++..++.. ...-..+..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 568999999999999999999987 333234455554
No 412
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.00 E-value=0.065 Score=54.31 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|+|+.|+||||+++.++..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999986
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.97 E-value=0.084 Score=54.81 Aligned_cols=23 Identities=22% Similarity=0.608 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
..+|+|.|+.|+||||+|+.+..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999984
No 414
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=91.95 E-value=0.067 Score=53.40 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|.|.|+.|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999887
No 415
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.91 E-value=0.089 Score=52.30 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMK 116 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~ 116 (977)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.91 E-value=0.17 Score=56.12 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=28.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEEEeCCCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFVRVTQTPD 134 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv~~~~~~~ 134 (977)
-.+++|+|.+|+||||+++.++.......+.+++.-.+.+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 45999999999999999999998721223445554344443
No 417
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.85 E-value=0.27 Score=55.95 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=35.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCC-CCEEEEEEeCCCCCHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIP-FDKVIFVRVTQTPDVKRVQDEIAR 144 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~-f~~~~wv~~~~~~~~~~~~~~i~~ 144 (977)
.++.|.|.+|+||||+|.+++.. ... =..++|++... +..++...+..
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~--s~~~l~~r~~~ 292 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE--SVEETAEDLIG 292 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS--CHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC--CHHHHHHHHHH
Confidence 48999999999999999999887 332 24678887655 45566665543
No 418
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=91.83 E-value=0.09 Score=55.45 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 58999999999999999999886
No 419
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.79 E-value=0.1 Score=57.29 Aligned_cols=45 Identities=20% Similarity=0.374 Sum_probs=33.2
Q ss_pred ccchHHHHHHHHHHhhcC------------CCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 73 LKSALEVIKSVMKLLKDN------------SISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 73 ~~gr~~~~~~l~~~l~~~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|.++.++.+...+... ....+-|.++|++|+||||+|+.++..
T Consensus 17 IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 567777777776555221 112456899999999999999999988
No 420
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=91.78 E-value=0.091 Score=55.01 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+++|+|+.|+||||+++.++..
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 469999999999999999999987
No 421
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.76 E-value=0.093 Score=49.77 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++++|+|..|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999999877
No 422
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.75 E-value=0.093 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 423
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.74 E-value=0.16 Score=49.99 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=27.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEEEeCCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFVRVTQT 132 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv~~~~~ 132 (977)
-.|.+.|.||+||||+|..++.. ...++ +..+.+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~-V~v~d~D~q 45 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVR-VMAGVVETH 45 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCCT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCC-EEEEEeCCC
Confidence 35888999999999999998887 44444 445555543
No 424
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.69 E-value=0.059 Score=54.20 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=16.0
Q ss_pred eEEEEEcCCCChHHHHHHHHH-hh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVM-KQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~-~~ 117 (977)
.+++|+|+.|+||||+++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 489999999999999999998 55
No 425
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.64 E-value=0.12 Score=52.78 Aligned_cols=31 Identities=32% Similarity=0.604 Sum_probs=26.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||++.++... ...+.+++
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~ 62 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL-PYSGNIFI 62 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS-CCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCcEEEE
Confidence 89999999999999999998876 66666665
No 426
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.61 E-value=0.11 Score=54.40 Aligned_cols=23 Identities=22% Similarity=0.599 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.+..-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 38999999999999999999876
No 427
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.59 E-value=0.12 Score=52.79 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=25.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.-... .+.+++
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i 78 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKI 78 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEE
Confidence 38999999999999999999876222 455544
No 428
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=91.58 E-value=0.096 Score=51.53 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999886
No 429
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.55 E-value=0.31 Score=43.58 Aligned_cols=55 Identities=16% Similarity=0.240 Sum_probs=44.0
Q ss_pred EEEeccCCCc--cCCCCCCCCCccEEEccCCCCCCCChhHHhcCCCccEEEccCCcCC
Q 002037 424 KLSLMDGNVT--ALPDQPKCPRLTTLFLQNNPFADIPNAFFEHTREIKNLDLSSTNIS 479 (977)
Q Consensus 424 ~l~l~~~~~~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~ 479 (977)
.++-+++.++ .+|.. -.++|+.|+|++|.+..++...|..++.|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555666666 66642 2346999999999999999999999999999999999654
No 430
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.51 E-value=0.3 Score=63.43 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=54.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHHH
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERLK 167 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l~ 167 (977)
+++.|+|.+|+||||||.+++.. ...=..++|++.....+... ++.++.... ..+.......+.....
T Consensus 384 ~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~~lv~ 458 (2050)
T 3cmu_A 384 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALAR 458 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHHHHHH
Confidence 49999999999999999999888 33334789998888776542 555554221 1122223333333333
Q ss_pred ccceEEEEecCcccc
Q 002037 168 RQKRVLIILDDLWGK 182 (977)
Q Consensus 168 ~~~~~LlvlDdv~~~ 182 (977)
..+.-+||+|.+...
T Consensus 459 ~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 459 SGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HTCCSEEEESCGGGC
T ss_pred hcCCcEEEECCHHHh
Confidence 456679999988643
No 431
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=91.50 E-value=0.13 Score=54.73 Aligned_cols=33 Identities=33% Similarity=0.436 Sum_probs=27.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 389999999999999999999885555666665
No 432
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.50 E-value=0.1 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
++|+|+|+.|+||||||+.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999886
No 433
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.49 E-value=0.18 Score=53.22 Aligned_cols=40 Identities=28% Similarity=0.466 Sum_probs=30.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 133 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~ 133 (977)
.++|+|+|-||+||||+|..++.. ...=..+.-|+.....
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~~ 81 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKH 81 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 678999999999999999998877 2222256677766443
No 434
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=91.43 E-value=0.098 Score=51.93 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|.|+.|+||||+|+.++..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999886
No 435
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.34 E-value=0.13 Score=52.24 Aligned_cols=22 Identities=36% Similarity=0.675 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++|+|+.|+|||||++.++.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999877
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.34 E-value=0.11 Score=54.64 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999876
No 437
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.33 E-value=0.11 Score=53.69 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=21.7
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+|.|+.|+||||||..++..
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHh
Confidence 358999999999999999999876
No 438
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.32 E-value=0.1 Score=54.92 Aligned_cols=38 Identities=24% Similarity=0.312 Sum_probs=28.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cC-CCC-EEEEEEeCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EI-PFD-KVIFVRVTQ 131 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~-~f~-~~~wv~~~~ 131 (977)
..+|+|+|..|+|||||++.+... .. ... .+.+++...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~ 120 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDG 120 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCC
Confidence 569999999999999999999887 31 233 345555443
No 439
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.31 E-value=0.44 Score=50.57 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=31.9
Q ss_pred HHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh--cCCCC-EEEEEEeCC
Q 002037 82 SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ--EIPFD-KVIFVRVTQ 131 (977)
Q Consensus 82 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~-~~~wv~~~~ 131 (977)
+.++.+..-.. =+.++|+|..|+|||+|++++++. .++-+ .++++-+.+
T Consensus 164 raID~l~Pigr-GQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGE 215 (427)
T 3l0o_A 164 RLIDLFAPIGK-GQRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDE 215 (427)
T ss_dssp HHHHHHSCCBT-TCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSC
T ss_pred hhhhhcccccC-CceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEecc
Confidence 45555544221 237899999999999999999987 22223 234565554
No 440
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=91.31 E-value=0.11 Score=51.92 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 441
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.24 E-value=0.075 Score=51.22 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=39.7
Q ss_pred CCCCCeEecCCCCCCC------CccccCCCCccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCC--CCc-----
Q 002037 488 LEKLRSLHLENTHLND------ASLIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLF--LQV----- 549 (977)
Q Consensus 488 l~~L~~L~L~~~~l~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~--~~~----- 549 (977)
-.+|+.|+|++|.+.+ ...+..-+.|++|+|++|.|. .+-+.+..-+.|++|+|+++.. ...
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 3455555555555543 122233345666666666554 2333344445677777765421 111
Q ss_pred cChhhhhcCccccEEEccCC
Q 002037 550 IPPNVISKLSQLEELYVGNS 569 (977)
Q Consensus 550 ~p~~~i~~L~~L~~L~l~~~ 569 (977)
+. .++..-+.|..|++..+
T Consensus 149 ia-~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 149 MM-MAIEENESLLRVGISFA 167 (197)
T ss_dssp HH-HHHHHCSSCCEEECCCC
T ss_pred HH-HHHHhCCCcCeEeccCC
Confidence 11 12344456777776543
No 442
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.22 E-value=0.1 Score=52.95 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++|+|+.|+|||||++.++.-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999884
No 443
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.21 E-value=0.16 Score=54.26 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=25.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.+..-.....+.+++
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 389999999999999999998863333444444
No 444
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.17 E-value=0.27 Score=49.14 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=27.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFV 127 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv 127 (977)
-.+|+|.|+.|+||||+++.+... ...+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence 358999999999999999999988 5556634444
No 445
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.16 E-value=0.11 Score=53.43 Aligned_cols=33 Identities=21% Similarity=0.306 Sum_probs=25.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhc--CCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQE--IPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~--~~f~~~~wv 127 (977)
.+++|+|+.|+|||||++.++.-. ....+.+++
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~ 81 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 389999999999999999998851 223455554
No 446
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.16 E-value=0.11 Score=51.48 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4799999999999999999886
No 447
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.13 E-value=0.17 Score=52.57 Aligned_cols=38 Identities=24% Similarity=0.327 Sum_probs=28.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCC----------CCEEEEEEeCCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIP----------FDKVIFVRVTQT 132 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~----------f~~~~wv~~~~~ 132 (977)
.++.|+|.+|+||||||..++.. ... -..+++++....
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~ 79 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP 79 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC
Confidence 39999999999999999998865 211 234667766554
No 448
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.12 E-value=0.29 Score=62.65 Aligned_cols=83 Identities=22% Similarity=0.260 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCCCHHHHHHHHHHHhhhccc------cchHHHHHHHHHHHH
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTPDVKRVQDEIARFLNTELE------GDVEVLRAAFLSERL 166 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~~~l~~~~~------~~~~~~~~~~l~~~l 166 (977)
=++|-|+|+.|+||||||.++... .+.=..++|+++....+..- ++.++.+.+ .+..++....+...+
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~ 1505 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDALA 1505 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHHHHH
Confidence 369999999999999999998876 55557789998888877654 677765433 222344455555566
Q ss_pred HccceEEEEecCccc
Q 002037 167 KRQKRVLIILDDLWG 181 (977)
Q Consensus 167 ~~~~~~LlvlDdv~~ 181 (977)
+.+..-++|+|-|..
T Consensus 1506 ~s~~~~~vvvDsv~a 1520 (1706)
T 3cmw_A 1506 RSGAVDVIVVDSVAA 1520 (1706)
T ss_dssp HHTCCSEEEESCSTT
T ss_pred HcCCCCEEEEccHHh
Confidence 667788999998854
No 449
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.01 E-value=0.3 Score=48.03 Aligned_cols=33 Identities=27% Similarity=0.445 Sum_probs=26.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~~wv 127 (977)
..|+|.|+.|+||||+++.+... ...+..+++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~ 38 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 38 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence 48999999999999999999988 5555334433
No 450
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.97 E-value=0.21 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+++|+|+.|+|||||++.++..
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 469999999999999999999976
No 451
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=90.95 E-value=0.12 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|.|.|+.|+||||+|+.+++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999887
No 452
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=90.94 E-value=0.21 Score=49.85 Aligned_cols=29 Identities=31% Similarity=0.486 Sum_probs=24.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFD 122 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~ 122 (977)
-.+|+|.|+.|+||||+++.+... ...++
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~ 55 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYD 55 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCC
Confidence 468999999999999999999988 33444
No 453
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=90.88 E-value=0.15 Score=54.21 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=27.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 389999999999999999999885555677766
No 454
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.87 E-value=0.13 Score=50.42 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+|.|.|++|+||||.|+.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999999886
No 455
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.87 E-value=0.14 Score=49.54 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|+|..|+|||||++.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 568999999999999999999876
No 456
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.86 E-value=0.13 Score=55.12 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+++|+|+.|+||||+++.++..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhh
Confidence 469999999999999999999987
No 457
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.85 E-value=0.18 Score=53.86 Aligned_cols=32 Identities=28% Similarity=0.629 Sum_probs=27.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 99999999999999999999875445566665
No 458
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.75 E-value=0.19 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.+..-
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhhh
Confidence 49999999999999999998865
No 459
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.74 E-value=0.38 Score=52.75 Aligned_cols=86 Identities=17% Similarity=0.208 Sum_probs=51.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhh-c-CCC---CEEEEEEeCCCC-CHHHHHHHHHHHhhhc--------cccchH-----H
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ-E-IPF---DKVIFVRVTQTP-DVKRVQDEIARFLNTE--------LEGDVE-----V 156 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~-~-~~f---~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~~~-----~ 156 (977)
.++|.|.+|+|||+|+.++++. . .+. +.++++-+.+.. .+.++.+++...=... .+.... .
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~~ 233 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVTP 233 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHHH
Confidence 6788899999999999999988 2 221 356677666543 4555666555431110 111111 1
Q ss_pred HHHHHHHHHHH--ccceEEEEecCccc
Q 002037 157 LRAAFLSERLK--RQKRVLIILDDLWG 181 (977)
Q Consensus 157 ~~~~~l~~~l~--~~~~~LlvlDdv~~ 181 (977)
..+..+-+++. +++.+|+++||+..
T Consensus 234 ~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 234 RMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 11123334444 58999999999753
No 460
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=90.73 E-value=0.39 Score=53.81 Aligned_cols=40 Identities=28% Similarity=0.471 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 75 SALEVIKSVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 75 gr~~~~~~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+..+.++.+...+..++ +.+.|.|.+|+||||++..+...
T Consensus 29 ~Q~~av~~~~~~i~~~~---~~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK---HHVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp HHHHHHHHHHHHHHSSS---CEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC---CEEEEEeCCCCCHHHHHHHHHHH
Confidence 55666777777776654 38999999999999999998887
No 461
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.69 E-value=0.14 Score=52.90 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=22.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+|.|+.|+||||||..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 468999999999999999999876
No 462
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.69 E-value=0.26 Score=50.68 Aligned_cols=38 Identities=24% Similarity=0.455 Sum_probs=28.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
++|+|.|-||+||||+|..++.. ...=..+.-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCC
Confidence 57888999999999999998887 332235677776643
No 463
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.67 E-value=0.11 Score=53.87 Aligned_cols=23 Identities=39% Similarity=0.691 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+++|+|+.|+|||||++.++.-
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 38999999999999999999876
No 464
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=90.67 E-value=0.19 Score=53.84 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 389999999999999999999875455666666
No 465
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.65 E-value=0.15 Score=47.50 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.|+|+|.+|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999875
No 466
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=90.63 E-value=0.19 Score=53.78 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=27.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 389999999999999999999875455666666
No 467
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.59 E-value=0.15 Score=48.93 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.|.|.|+.|+||||||..+..+
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999887
No 468
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.58 E-value=0.19 Score=53.95 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=27.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 89999999999999999999885555666666
No 469
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=90.53 E-value=0.19 Score=53.93 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=27.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 389999999999999999999875555666766
No 470
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=90.51 E-value=0.14 Score=52.50 Aligned_cols=24 Identities=33% Similarity=0.398 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..++.+.|.||+||||++..++..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHH
Confidence 568899999999999999999866
No 471
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.45 E-value=0.15 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+++|+|+.|+||||+++.+...
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 359999999999999999999876
No 472
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=90.43 E-value=0.2 Score=53.98 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=27.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 89999999999999999999874445566665
No 473
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.31 E-value=0.15 Score=47.85 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|+|.+|+|||||...+.+.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 474
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.28 E-value=0.15 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 475
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.27 E-value=0.19 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|+|.+|+|||||+..+.+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 558999999999999999999876
No 476
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=90.26 E-value=0.086 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.421 Sum_probs=19.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|+|.|..|+||||+|+.+...
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 477
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.22 E-value=0.15 Score=51.30 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.5
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...+|+|.|+.|+||||+++.+...
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999875
No 478
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.13 E-value=0.16 Score=54.26 Aligned_cols=33 Identities=27% Similarity=0.603 Sum_probs=27.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHhhcCCCCEEEEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQEIPFDKVIFV 127 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~~~~f~~~~wv 127 (977)
.+++|+|+.|+|||||.+.++.-.....+.+++
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 389999999999999999999874445566665
No 479
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.08 E-value=0.18 Score=49.08 Aligned_cols=24 Identities=21% Similarity=0.540 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999876
No 480
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.00 E-value=0.15 Score=52.31 Aligned_cols=22 Identities=41% Similarity=0.661 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.++|+|..|+|||||.+.++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999976
No 481
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.91 E-value=0.28 Score=51.14 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=28.8
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQT 132 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~ 132 (977)
.++|+|.|-||+||||+|..++.. ...=..+.-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 468888999999999999998877 222224666766643
No 482
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=89.91 E-value=0.13 Score=49.49 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=40.4
Q ss_pred CCCeEecCCC-CCCC------CccccCCCCccEEEccCCCCc-----ccCccccCCCCCCEEEcCCCCCCCccChh---h
Q 002037 490 KLRSLHLENT-HLND------ASLIREFGELEVLILKGSRIV-----ELPNGIGTVSNLKLLDLSNNLFLQVIPPN---V 554 (977)
Q Consensus 490 ~L~~L~L~~~-~l~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~~~~~p~~---~ 554 (977)
.|++|+|+++ .+.+ ...+..-..|+.|+|++|.|. .+-+.+..-+.|++|+|+.|.+...--.. .
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 4555555543 4433 133444556777777777665 23333444456777777777643321111 1
Q ss_pred hhcCccccEEEccC
Q 002037 555 ISKLSQLEELYVGN 568 (977)
Q Consensus 555 i~~L~~L~~L~l~~ 568 (977)
+..-+.|++|++++
T Consensus 122 L~~N~tL~~L~L~n 135 (197)
T 1pgv_A 122 TLVTQSIVEFKADN 135 (197)
T ss_dssp TTTTCCCSEEECCC
T ss_pred HhhCCceeEEECCC
Confidence 22334577777754
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.90 E-value=0.14 Score=49.28 Aligned_cols=22 Identities=45% Similarity=0.690 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 484
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.82 E-value=0.4 Score=52.87 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=49.9
Q ss_pred EEEEEcCCCChHHHHH-HHHHhhcCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhhh--------ccccchHHH-----HH
Q 002037 96 IIGVYGSGGIGKTTLM-KQVMKQEIPFD-KVIFVRVTQTP-DVKRVQDEIARFLNT--------ELEGDVEVL-----RA 159 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa-~~v~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~--------~~~~~~~~~-----~~ 159 (977)
.++|.|..|+|||+|| ..+.+..+ -+ .++++-+.+.. .+.++.+.+...=.. ..+...... ..
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~-~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tvvV~atad~p~~~r~~a~~~a 242 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKG-QDVICIYVAIGQKQSTVAGVVETLRQHDALDYTIVVTASASEPAPLLYLAPYAG 242 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGS-CSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCchHHHHHHHHHhhc-CCcEEEEEECCCcchHHHHHHHHHhhCCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 7899999999999996 47777643 45 34777777654 344555555432111 011111111 11
Q ss_pred HHHHHHHH-ccceEEEEecCccc
Q 002037 160 AFLSERLK-RQKRVLIILDDLWG 181 (977)
Q Consensus 160 ~~l~~~l~-~~~~~LlvlDdv~~ 181 (977)
-.+-+++. .++.+|+++||+..
T Consensus 243 ~tiAEyfrd~G~dVLl~~Dsltr 265 (502)
T 2qe7_A 243 CAMGEYFMYKGKHALVVYDDLSK 265 (502)
T ss_dssp HHHHHHHHTTTCEEEEEEECHHH
T ss_pred HHHHHHHHHcCCcEEEEEecHHH
Confidence 22334443 58999999999854
No 485
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.80 E-value=0.39 Score=53.01 Aligned_cols=85 Identities=19% Similarity=0.305 Sum_probs=50.2
Q ss_pred EEEEEcCCCChHHHHHH-HHHhhcCCCC-EEEEEEeCCCC-CHHHHHHHHHHHhhhc--------cccchHH-----HHH
Q 002037 96 IIGVYGSGGIGKTTLMK-QVMKQEIPFD-KVIFVRVTQTP-DVKRVQDEIARFLNTE--------LEGDVEV-----LRA 159 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~-~v~~~~~~f~-~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~~~~-----~~~ 159 (977)
.++|.|..|+|||+||. .+.+.. .-+ .++++-+.+.. .+.++.+.+...=... .+..... ..+
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~-~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtvvV~atad~p~~~r~~a~~~a 255 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQK-GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTTVVVASASDPASLQYIAPYAG 255 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTT-TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCccHHHHHHHHHhh-cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeEEEEECCCCCHHHHHHHHHHH
Confidence 78999999999999964 677764 245 35777777654 4555555554421110 1111111 111
Q ss_pred HHHHHHHH-ccceEEEEecCccc
Q 002037 160 AFLSERLK-RQKRVLIILDDLWG 181 (977)
Q Consensus 160 ~~l~~~l~-~~~~~LlvlDdv~~ 181 (977)
..+-+++. +++.+|+++||+..
T Consensus 256 ~tiAEyfrd~G~dVLli~DslTr 278 (515)
T 2r9v_A 256 CAMGEYFAYSGRDALVVYDDLSK 278 (515)
T ss_dssp HHHHHHHHTTTCEEEEEEETHHH
T ss_pred HHHHHHHHHcCCcEEEEeccHHH
Confidence 22334443 58999999999854
No 486
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.79 E-value=0.16 Score=56.05 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+|.|+|+.|+||||+|+.++..
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 579999999999999999999876
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.75 E-value=0.49 Score=46.48 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=25.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHhh--cCCCCEE
Q 002037 95 NIIGVYGSGGIGKTTLMKQVMKQ--EIPFDKV 124 (977)
Q Consensus 95 ~vi~I~G~gGiGKTtLa~~v~~~--~~~f~~~ 124 (977)
..|+|.|+.|+||||+++.+... ...+..+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~ 38 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQ 38 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcc
Confidence 58999999999999999999988 4455543
No 488
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.62 E-value=0.13 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
-.+|+|.|+.|+||||+++.+...
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 469999999999999999999876
No 489
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.55 E-value=0.2 Score=54.70 Aligned_cols=24 Identities=21% Similarity=0.392 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
..+++|+|..|+|||||.+.+...
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 459999999999999999999984
No 490
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.55 E-value=0.36 Score=51.52 Aligned_cols=39 Identities=31% Similarity=0.463 Sum_probs=30.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-c--CCCCEEEEEEeCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-E--IPFDKVIFVRVTQT 132 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~--~~f~~~~wv~~~~~ 132 (977)
.+++.+.|.||+||||+|..++.. . ..=..+.-|+....
T Consensus 18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 689999999999999999998877 4 44345667776644
No 491
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.49 E-value=0.21 Score=47.74 Aligned_cols=25 Identities=36% Similarity=0.387 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCChHHHHHHHHHhh
Q 002037 93 SINIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 93 ~~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
....|+|+|.+|+|||||...+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998865
No 492
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.44 E-value=0.66 Score=46.49 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=21.7
Q ss_pred HHHHHhhcCCCceeEEEEEcCCCChHHHHHHHHH
Q 002037 82 SVMKLLKDNSISINIIGVYGSGGIGKTTLMKQVM 115 (977)
Q Consensus 82 ~l~~~l~~~~~~~~vi~I~G~gGiGKTtLa~~v~ 115 (977)
+++..+..+. .+.|.|..|+||||++..+.
T Consensus 68 ~~i~~i~~g~----~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 68 EILEAISQNS----VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHCS----EEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhcCC----EEEEEeCCCCCcHHhHHHHH
Confidence 3444444444 89999999999998776554
No 493
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.44 E-value=0.19 Score=48.18 Aligned_cols=22 Identities=18% Similarity=0.430 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+.+|+|..|+|||||+.+++--
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999998754
No 494
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=89.44 E-value=0.41 Score=50.75 Aligned_cols=40 Identities=28% Similarity=0.297 Sum_probs=30.4
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh-cCCCCEEEEEEeCCCC
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ-EIPFDKVIFVRVTQTP 133 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~-~~~f~~~~wv~~~~~~ 133 (977)
.+++.+.|-||+||||+|..++.. ...=..+.-|+.....
T Consensus 16 ~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 16 LRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 678889999999999999998877 3333456677766443
No 495
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.42 E-value=0.22 Score=47.78 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
...|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999874
No 496
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.41 E-value=0.97 Score=43.73 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+|-|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999988
No 497
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=89.33 E-value=0.4 Score=47.38 Aligned_cols=32 Identities=28% Similarity=0.307 Sum_probs=26.1
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh--c-CCCCEEE
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ--E-IPFDKVI 125 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~--~-~~f~~~~ 125 (977)
-..|+|.|+.|+||||+++.+.+. . ..++.+.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 568999999999999999999988 4 4555443
No 498
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.21 E-value=0.19 Score=46.92 Aligned_cols=22 Identities=36% Similarity=0.699 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhh
Q 002037 96 IIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
.|+++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999866
No 499
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.15 E-value=0.19 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.567 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCChHHHHHHHHHhh
Q 002037 94 INIIGVYGSGGIGKTTLMKQVMKQ 117 (977)
Q Consensus 94 ~~vi~I~G~gGiGKTtLa~~v~~~ 117 (977)
+++++|+|+.|+|||||.+.+...
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred ccEEEEEecCCCCHHHHHHHHHhh
Confidence 789999999999999999999865
No 500
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.10 E-value=0.95 Score=49.77 Aligned_cols=86 Identities=22% Similarity=0.268 Sum_probs=50.3
Q ss_pred EEEEEcCCCChHHHHH-HHHHhhcCCCCEEEEEEeCCCC-CHHHHHHHHHHHhhhc--------cccchHH-----HHHH
Q 002037 96 IIGVYGSGGIGKTTLM-KQVMKQEIPFDKVIFVRVTQTP-DVKRVQDEIARFLNTE--------LEGDVEV-----LRAA 160 (977)
Q Consensus 96 vi~I~G~gGiGKTtLa-~~v~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~l~~~--------~~~~~~~-----~~~~ 160 (977)
.++|.|..|+|||+|| ..+.+..+.-..++++-+.+.. .+.++.+.+.+.=... .+..... ....
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tvvV~atad~p~~~r~~a~~~a~ 243 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTIVVVATASESAALQYLAPYAGC 243 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHHhhcCcccceEEEEECCCCChHHHHHHHHHHH
Confidence 6899999999999996 5677763332346788888764 3555555544321110 0111110 1111
Q ss_pred HHHHHHH-ccceEEEEecCccc
Q 002037 161 FLSERLK-RQKRVLIILDDLWG 181 (977)
Q Consensus 161 ~l~~~l~-~~~~~LlvlDdv~~ 181 (977)
.+-+++. +++.+|+++||+..
T Consensus 244 tiAEyfrd~G~dVLli~Dsltr 265 (513)
T 3oaa_A 244 AMGEYFRDRGEDALIIYDDLSK 265 (513)
T ss_dssp HHHHHHHHTTCEEEEEEETHHH
T ss_pred HHHHHHHhcCCCEEEEecChHH
Confidence 2233332 58999999999854
Done!