Your job contains 1 sequence.
>002040
MAHSHRDRDREKEKEKHREKSRRSEREQSTDSDEDKHDKEKEKDKHRDRDRRRDRDRDRD
REKEREEKRERAREKEREREKRDREREDRERERERERERRERDREREKRERERDRDKEKD
RERKSRDREKRRKVESDDSDEDKDRDRKRRRRHDDDHKERVRERSLSRSNRHRDENDESP
REKLVEDDSDKKEKKTREEELEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDA
NVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAA
PALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNG
EQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHS
KIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIME
TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG
PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR
MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR
QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIF
VHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV
KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV
PDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKS
DSDDEDEGIRKAGGDISQQDALAKISAIRKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQ
ALSLPGGAQPGRYSVV
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 002040
(976 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2037416 - symbol:RCF1 "regulator of CBF gene e... 2694 1.7e-297 2
TAIR|locus:2074899 - symbol:AT3G09620 species:3702 "Arabi... 1785 2.4e-268 3
MGI|MGI:1920895 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) bo... 1544 9.2e-174 3
RGD|708480 - symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box pol... 1543 3.1e-173 3
UNIPROTKB|Q62780 - symbol:Ddx46 "Probable ATP-dependent R... 1543 3.1e-173 3
UNIPROTKB|F1PK90 - symbol:DDX46 "Uncharacterized protein"... 1540 1.7e-172 3
UNIPROTKB|Q7L014 - symbol:DDX46 "Probable ATP-dependent R... 1540 1.7e-172 3
UNIPROTKB|I3LR20 - symbol:DDX46 "Uncharacterized protein"... 1541 2.8e-172 3
UNIPROTKB|F1MX40 - symbol:DDX46 "Uncharacterized protein"... 1538 2.8e-172 3
FB|FBgn0030631 - symbol:CG6227 species:7227 "Drosophila m... 1511 2.4e-171 4
ZFIN|ZDB-GENE-030131-667 - symbol:ddx46 "DEAD (Asp-Glu-Al... 1564 5.6e-167 2
UNIPROTKB|E1BSC0 - symbol:DDX46 "Uncharacterized protein"... 1556 3.9e-166 2
POMBASE|SPCC10H11.01 - symbol:prp11 "ATP-dependent RNA he... 1465 2.2e-164 3
DICTYBASE|DDB_G0275443 - symbol:helB1 "putative RNA splic... 1455 9.6e-164 3
ASPGD|ASPL0000055571 - symbol:AN1266 species:162425 "Emer... 1475 2.0e-158 2
WB|WBGene00018776 - symbol:F53H1.1 species:6239 "Caenorha... 1420 1.3e-153 3
UNIPROTKB|A4RN46 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 1425 9.3e-152 2
CGD|CAL0005725 - symbol:PRP5 species:5476 "Candida albica... 1162 1.9e-126 3
UNIPROTKB|Q5ADL0 - symbol:PRP5 "Pre-mRNA-processing ATP-d... 1162 1.9e-126 3
GENEDB_PFALCIPARUM|PFE0430w - symbol:PFE0430w "ATP-depend... 1087 9.1e-118 4
UNIPROTKB|Q8I416 - symbol:PFE0430w "ATP-dependent RNA Hel... 1087 9.1e-118 4
TAIR|locus:2065215 - symbol:AT2G47330 species:3702 "Arabi... 1133 6.4e-115 1
TAIR|locus:2162022 - symbol:AT5G63120 species:3702 "Arabi... 1104 7.6e-112 1
ZFIN|ZDB-GENE-050706-53 - symbol:ddx42 "DEAD (Asp-Glu-Ala... 1044 8.0e-110 2
FB|FBgn0036104 - symbol:CG6418 species:7227 "Drosophila m... 1082 1.6e-109 1
UNIPROTKB|E1BJD2 - symbol:DDX42 "Uncharacterized protein"... 1030 9.2e-107 2
DICTYBASE|DDB_G0288501 - symbol:ddx42 "DEAD/DEAH box heli... 1052 2.5e-106 1
TAIR|locus:2035741 - symbol:RH20 "RNA helicase 20" specie... 1040 4.6e-105 1
UNIPROTKB|Q5F485 - symbol:DDX42 "ATP-dependent RNA helica... 1038 7.5e-105 1
UNIPROTKB|F1NJ40 - symbol:DDX42 "ATP-dependent RNA helica... 1037 9.5e-105 1
UNIPROTKB|F1P0H1 - symbol:DDX42 "ATP-dependent RNA helica... 1036 1.2e-104 1
UNIPROTKB|E2RFF1 - symbol:DDX42 "Uncharacterized protein"... 1033 2.5e-104 1
MGI|MGI:1919297 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) bo... 1032 3.2e-104 1
UNIPROTKB|Q86XP3 - symbol:DDX42 "ATP-dependent RNA helica... 1031 4.1e-104 1
RGD|1304909 - symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box po... 1027 1.1e-103 1
UNIPROTKB|Q5R7D1 - symbol:DDX42 "ATP-dependent RNA helica... 1026 1.4e-103 1
ASPGD|ASPL0000006660 - symbol:AN5931 species:162425 "Emer... 999 1.0e-100 1
CGD|CAL0003204 - symbol:DBP2 species:5476 "Candida albica... 993 4.4e-100 1
UNIPROTKB|E1C2R8 - symbol:DDX17 "Uncharacterized protein"... 990 9.1e-100 1
ZFIN|ZDB-GENE-030131-925 - symbol:ddx5 "DEAD (Asp-Glu-Ala... 989 1.2e-99 1
POMBASE|SPBP8B7.16c - symbol:dbp2 "ATP-dependent RNA heli... 985 3.1e-99 1
UNIPROTKB|A7E307 - symbol:DDX17 "Uncharacterized protein"... 984 3.9e-99 1
UNIPROTKB|E2RJ60 - symbol:DDX17 "Uncharacterized protein"... 984 3.9e-99 1
UNIPROTKB|F1PID8 - symbol:DDX17 "Uncharacterized protein"... 984 3.9e-99 1
UNIPROTKB|H3BLZ8 - symbol:DDX17 "Probable ATP-dependent R... 984 3.9e-99 1
UNIPROTKB|Q92841 - symbol:DDX17 "Probable ATP-dependent R... 984 3.9e-99 1
UNIPROTKB|F1SKQ0 - symbol:DDX17 "Uncharacterized protein"... 984 3.9e-99 1
MGI|MGI:1914290 - symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) bo... 984 3.9e-99 1
SGD|S000005056 - symbol:DBP2 "ATP-dependent RNA helicase ... 980 1.0e-98 1
UNIPROTKB|C9JMU5 - symbol:DDX17 "Probable ATP-dependent R... 973 5.8e-98 1
UNIPROTKB|A4QSS5 - symbol:DBP2 "ATP-dependent RNA helicas... 973 5.8e-98 1
ZFIN|ZDB-GENE-030131-18 - symbol:si:dkey-156n14.5 "si:dke... 973 5.8e-98 1
DICTYBASE|DDB_G0293168 - symbol:ddx17 "DEAD/DEAH box heli... 953 1.1e-97 2
FB|FBgn0003261 - symbol:Rm62 "Rm62" species:7227 "Drosoph... 970 1.2e-97 1
UNIPROTKB|F1NM08 - symbol:DDX5 "Uncharacterized protein" ... 953 7.6e-96 1
UNIPROTKB|F1NXI3 - symbol:DDX5 "Uncharacterized protein" ... 953 7.6e-96 1
UNIPROTKB|F1MBQ8 - symbol:DDX5 "Uncharacterized protein" ... 948 2.6e-95 1
UNIPROTKB|F1PEA6 - symbol:DDX5 "Uncharacterized protein" ... 948 2.6e-95 1
UNIPROTKB|J3KTA4 - symbol:DDX5 "Probable ATP-dependent RN... 948 2.6e-95 1
UNIPROTKB|P17844 - symbol:DDX5 "Probable ATP-dependent RN... 948 2.6e-95 1
UNIPROTKB|Q5R4I9 - symbol:DDX5 "Probable ATP-dependent RN... 948 2.6e-95 1
MGI|MGI:105037 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box ... 948 2.6e-95 1
RGD|619906 - symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box heli... 948 2.6e-95 1
UNIPROTKB|Q4R6M5 - symbol:DDX5 "Probable ATP-dependent RN... 944 6.8e-95 1
FB|FBgn0035720 - symbol:CG10077 species:7227 "Drosophila ... 941 1.4e-94 1
UNIPROTKB|A5A6J2 - symbol:DDX5 "Probable ATP-dependent RN... 941 1.4e-94 1
UNIPROTKB|F1RSJ7 - symbol:DDX42 "Uncharacterized protein"... 938 3.0e-94 1
FB|FBgn0029979 - symbol:CG10777 species:7227 "Drosophila ... 933 1.0e-93 1
WB|WBGene00008119 - symbol:C46F11.4 species:6239 "Caenorh... 924 9.0e-93 1
SGD|S000000441 - symbol:PRP5 "RNA helicase in the DEAD-bo... 848 3.8e-92 3
GENEDB_PFALCIPARUM|PF14_0437 - symbol:PF14_0437 "helicase... 915 8.1e-92 1
UNIPROTKB|Q8IL13 - symbol:PF14_0437 "Helicase, putative" ... 915 8.1e-92 1
WB|WBGene00010260 - symbol:F58E10.3 species:6239 "Caenorh... 903 1.5e-90 1
FB|FBgn0037549 - symbol:CG7878 species:7227 "Drosophila m... 891 2.8e-89 1
UNIPROTKB|E9PT29 - symbol:Ddx17 "Protein Ddx17" species:1... 874 1.8e-87 1
TAIR|locus:2081061 - symbol:AT3G06480 species:3702 "Arabi... 874 1.8e-87 1
TAIR|locus:2084178 - symbol:DRH1 "DEAD box RNA helicase 1... 844 3.5e-86 2
ZFIN|ZDB-GENE-080204-77 - symbol:ddx43 "DEAD (Asp-Glu-Ala... 846 1.7e-84 1
TAIR|locus:2057640 - symbol:AT2G33730 species:3702 "Arabi... 825 1.7e-84 2
TAIR|locus:2222617 - symbol:AT5G14610 species:3702 "Arabi... 794 1.9e-83 2
UNIPROTKB|F1SQ03 - symbol:LOC100524536 "Uncharacterized p... 833 3.9e-83 1
UNIPROTKB|I3LHW0 - symbol:I3LHW0 "Uncharacterized protein... 833 3.9e-83 1
UNIPROTKB|F1NQ09 - symbol:DDX43 "Uncharacterized protein"... 829 1.0e-82 1
UNIPROTKB|F1NVJ6 - symbol:DDX43 "Uncharacterized protein"... 827 1.7e-82 1
UNIPROTKB|Q9NXZ2 - symbol:DDX43 "Probable ATP-dependent R... 823 4.5e-82 1
UNIPROTKB|G3MYF0 - symbol:LOC100300937 "Uncharacterized p... 820 9.4e-82 1
UNIPROTKB|E1BII7 - symbol:DDX43 "Uncharacterized protein"... 819 1.2e-81 1
ZFIN|ZDB-GENE-980526-150 - symbol:pl10 "pl10" species:795... 679 2.5e-81 2
GENEDB_PFALCIPARUM|PFL1310c - symbol:PFL1310c "ATP-depend... 666 1.2e-79 3
ASPGD|ASPL0000077157 - symbol:AN10557 species:162425 "Eme... 775 3.2e-79 2
UNIPROTKB|F1S0I6 - symbol:DDX43 "Uncharacterized protein"... 796 3.3e-79 1
TAIR|locus:2034481 - symbol:STRS1 "STRESS RESPONSE SUPPRE... 746 1.0e-78 3
TAIR|locus:2076436 - symbol:AT3G58570 species:3702 "Arabi... 785 4.8e-78 1
MGI|MGI:1349406 - symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) bo... 738 7.1e-78 3
TAIR|locus:2076351 - symbol:AT3G58510 species:3702 "Arabi... 762 9.5e-78 2
TAIR|locus:2176192 - symbol:AT5G51280 species:3702 "Arabi... 782 1.0e-77 1
DICTYBASE|DDB_G0287361 - symbol:ddx41 "DEAD box protein a... 753 1.2e-77 2
WB|WBGene00013214 - symbol:Y54G11A.3 species:6239 "Caenor... 777 3.4e-77 1
UNIPROTKB|E2R052 - symbol:DDX41 "Uncharacterized protein"... 735 6.6e-77 2
UNIPROTKB|J9NZF6 - symbol:DDX41 "Uncharacterized protein"... 735 1.8e-76 2
WARNING: Descriptions of 942 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2037416 [details] [associations]
symbol:RCF1 "regulator of CBF gene expression 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003723 EMBL:AC007369
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
HOGENOM:HOG000007229 EMBL:BT002030 IPI:IPI00537100 PIR:H86341
RefSeq:NP_173516.1 UniGene:At.41680 UniGene:At.48212
ProteinModelPortal:Q8H0U8 SMR:Q8H0U8 PaxDb:Q8H0U8 PRIDE:Q8H0U8
EnsemblPlants:AT1G20920.1 GeneID:838685 KEGG:ath:AT1G20920
KEGG:dosa:Os08t0154225-00 KEGG:dosa:Os08t0159900-01 GeneFarm:1021
TAIR:At1g20920 InParanoid:Q8H0U8 OMA:QIHSDIR PhylomeDB:Q8H0U8
ProtClustDB:CLSN2679447 Genevestigator:Q8H0U8 GermOnline:AT1G20920
Uniprot:Q8H0U8
Length = 1166
Score = 2694 (953.4 bits), Expect = 1.7e-297, Sum P(2) = 1.7e-297
Identities = 541/769 (70%), Positives = 602/769 (78%)
Query: 165 SLSRSNRHRDENDESPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEKRRRRVQEWQX 224
S+ RS+RH D SP+ +EKRRRRVQEWQ
Sbjct: 236 SVGRSSRHED----SPKRKSVEDNGEKKEKKTREEELEDEQKKLDEEVEKRRRRVQEWQE 291
Query: 225 XXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSEN 284
GDA+ EPKAG+ WTL+ E SDDEE KSET+MD DEE KP EN
Sbjct: 292 LKRKKEEAESESKGDADGNEPKAGKAWTLEGE-SDDEEGHPEEKSETEMDVDEETKP-EN 349
Query: 285 QVGDAMLVDSDGGSAAPALQIG---AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTD 341
GDA +VD + +AA + G A ++E+IDPLDAFMN+MVLPEVEK N P +
Sbjct: 350 D-GDAKMVDLENETAATVSESGGDGAVDEEEIDPLDAFMNTMVLPEVEKFCNGAPPPAVN 408
Query: 342 GNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXX 401
++SK M+ K +G++PKK NK+LGRII GEDSDSDY
Sbjct: 409 DGTLDSK-MNGK----ESGDRPKKGFNKALGRIIQGEDSDSDYSEPKNDDDPSLDEDDEE 463
Query: 402 FMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD 461
FMKRVKKTKAEKLS+VDHSKI+Y+PFRKNFYIEVK+I+RMT EEV+ YRK+LELK+HGKD
Sbjct: 464 FMKRVKKTKAEKLSLVDHSKIEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKD 523
Query: 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
VP+PIK WHQTGLTSKI++T++KLNYEKPMPIQ QALP+IMSGRDCIGVAKTGSGKTL F
Sbjct: 524 VPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGF 583
Query: 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581
VLPMLRHIKDQPPV AGDGP+GL+MAPTRELVQQIHSDIRKF+K +G+RCVPVYGGSGVA
Sbjct: 584 VLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVA 643
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
QQISELKRGTEIVVCTPGRMIDILCTS GKITNLRRVT+LVMDEADRMFDMGFEPQITRI
Sbjct: 644 QQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRI 703
Query: 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 701
+QNIRP+RQTVLFSATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF
Sbjct: 704 IQNIRPERQTVLFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 763
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
LRLLELLGEW EKGKIL+FV SQEKCDAL+RD++K YPCLSLHG KDQTDRESTISDFK
Sbjct: 764 LRLLELLGEWSEKGKILVFVQSQEKCDALYRDMIKSSYPCLSLHGGKDQTDRESTISDFK 823
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
++VCNLLIATSVAARGLDVKELELV+NFDAPNHYEDYVHRVGRTGRAGRKGCA+TFISE+
Sbjct: 824 NDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKGCAVTFISED 883
Query: 822 DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNXXXXXX 881
DAKY+PDLVKALELSEQ VPDDLKALAD FM KV QG+EQAHGTGYGGSGFKFN
Sbjct: 884 DAKYAPDLVKALELSEQPVPDDLKALADGFMVKVKQGIEQAHGTGYGGSGFKFNEEEEEV 943
Query: 882 XXXXXXXXXXXYGFXXXXXXXXXXXXGIRKAGG-DISQQDA-LAKISAI 928
YGF +RKAGG +ISQQ A A+I+AI
Sbjct: 944 RKAAKKAQAKEYGFEEDKSDSEDENDVVRKAGGGEISQQQATFAQIAAI 992
Score = 186 (70.5 bits), Expect = 1.7e-297, Sum P(2) = 1.7e-297
Identities = 40/49 (81%), Positives = 44/49 (89%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALS-LPGGAQPGRYSVV 976
RKLYLFIEGP+E+SVK AKAELKRVLED TNQA+S LPGGA GRYSV+
Sbjct: 1119 RKLYLFIEGPSEKSVKHAKAELKRVLEDITNQAMSSLPGGAS-GRYSVL 1166
Score = 60 (26.2 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 349 KMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDS 380
K D K R+ GE+ +K KS+GR EDS
Sbjct: 215 KRDLKRRRKEGGERKEKEREKSVGRSSRHEDS 246
Score = 49 (22.3 bits), Expect = 1.4e-09, Sum P(3) = 1.4e-09
Identities = 17/63 (26%), Positives = 28/63 (44%)
Query: 327 EVEKLKNTVEPSFTDGNNVESKKM----DRKGDRRSN-GEQPKKSSNKSLGRIIPGEDSD 381
EVEK K E + KK DR +R+ + G + ++ ++ R+ DS+
Sbjct: 2 EVEKSKYRSEDLDVVEEEADLKKSRRDRDRSNERKKDKGSEKRREKDRRKKRV-KSSDSE 60
Query: 382 SDY 384
DY
Sbjct: 61 DDY 63
Score = 42 (19.8 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 17/76 (22%), Positives = 28/76 (36%)
Query: 213 EKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETD 272
E+R R +E + G+ + E + R +RE EV G E+D
Sbjct: 155 ERREREREEREKERVKERERREREDGERDRREREKERGSRRNRERERSREV---GNEESD 211
Query: 273 MDADEEPKPSENQVGD 288
D + K + G+
Sbjct: 212 DDVKRDLKRRRKEGGE 227
Score = 41 (19.5 bits), Expect = 8.7e-09, Sum P(3) = 8.7e-09
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 346 ESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSD 383
E + DR+ + G + + +S R + E+SD D
Sbjct: 178 EDGERDRREREKERGSRRNRERERS--REVGNEESDDD 213
Score = 39 (18.8 bits), Expect = 1.1e-10, Sum P(3) = 1.1e-10
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 445 EVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSK 477
E++ + + K+ K+ PI W +T++
Sbjct: 1072 EINDFPQNARWKVTHKETLGPISEWTGAAITTR 1104
>TAIR|locus:2074899 [details] [associations]
symbol:AT3G09620 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003723 EMBL:AC016661 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 IPI:IPI00534330
RefSeq:NP_187573.1 UniGene:At.53239 ProteinModelPortal:Q9SF41
SMR:Q9SF41 PaxDb:Q9SF41 PRIDE:Q9SF41 EnsemblPlants:AT3G09620.1
GeneID:820119 KEGG:ath:AT3G09620 KEGG:dosa:Os08t0154200-01
GeneFarm:1024 TAIR:At3g09620 InParanoid:Q9SF41 OMA:RGRYKVL
PhylomeDB:Q9SF41 ArrayExpress:Q9SF41 Genevestigator:Q9SF41
GermOnline:AT3G09620 Uniprot:Q9SF41
Length = 989
Score = 1785 (633.4 bits), Expect = 2.4e-268, Sum P(3) = 2.4e-268
Identities = 362/500 (72%), Positives = 412/500 (82%)
Query: 239 DANVEE--PKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDG 296
+A +E P+ G+ WTLD E SDDE KS+++MD D + K EN GDA +V S+
Sbjct: 180 EAQIESKGPETGKAWTLDGE-SDDEV-----KSDSEMDVDRDTK-LENG-GDAKMVASEN 231
Query: 297 GSAAPALQIG---AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRK 353
+A + G AA++++IDPLDAFMN+MVLPEVEKL N V DG +D K
Sbjct: 232 ETAVTVSENGGDRAADEDEIDPLDAFMNTMVLPEVEKLSNIV----IDGI------LDFK 281
Query: 354 GDRRSNGEQPKKSSNKS-LGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAE 412
+ + G+Q KK NK+ LGRII GEDSDSDY FMKRVKKTKAE
Sbjct: 282 MNGKETGDQAKKGFNKAALGRIIQGEDSDSDYSEPKSDDDPSLDEDDEEFMKRVKKTKAE 341
Query: 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
KLS+VDHSKI+Y+PFRKNFYIEVK+I+RMT + V+AYRK+LELK+HGKDVP+PI+ WHQT
Sbjct: 342 KLSLVDHSKIEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQT 401
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GLTSKI++T++KLNYEKPMPIQAQALP+IMSGRDCIGVAKTGSGKTL FVLPMLRHIKDQ
Sbjct: 402 GLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQ 461
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
PPV AGDGP+GL+MAPTRELVQQI+SDIRKF+K +G+ CVPVYGGSGVAQQISELKRGTE
Sbjct: 462 PPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTE 521
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
IVVCTPGRMIDILCTS GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV
Sbjct: 522 IVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 581
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY 712
LFSATFPRQVE LARKVLNKPVEIQVGGRSVVNKDITQLVE+RPES+RF RLLELLGEWY
Sbjct: 582 LFSATFPRQVETLARKVLNKPVEIQVGGRSVVNKDITQLVEIRPESERFSRLLELLGEWY 641
Query: 713 EKGKILIFVHSQEKCDALFR 732
EKGK+L+FV SQEK + F+
Sbjct: 642 EKGKVLVFVRSQEKSISDFK 661
Score = 637 (229.3 bits), Expect = 2.4e-268, Sum P(3) = 2.4e-268
Identities = 126/177 (71%), Positives = 140/177 (79%)
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
+E +ISDFKS+VCNLLIATSVAARGLDVKELELV+NFDAPNHYEDYVHRVGRTGRAGRKG
Sbjct: 653 QEKSISDFKSDVCNLLIATSVAARGLDVKELELVVNFDAPNHYEDYVHRVGRTGRAGRKG 712
Query: 813 CAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGF 872
CA+TFISE+DAKY+PDLVKALELSEQ VPDD+KA+A+ FMAKV QG+EQAHGTGYGGSGF
Sbjct: 713 CAVTFISEDDAKYAPDLVKALELSEQPVPDDVKAVAEGFMAKVKQGIEQAHGTGYGGSGF 772
Query: 873 KFNXXXXXXXXXXXXXXXXXYGFXXXXXXXXXXXXGIRKAGGDISQQD-ALAKISAI 928
KFN YGF +RKAGGDISQQ LA+I+AI
Sbjct: 773 KFNEEEDEVRKAAKKAQAKEYGFEEEKSDSEDENDVVRKAGGDISQQQITLAQIAAI 829
Score = 237 (88.5 bits), Expect = 2.3e-103, Sum P(3) = 2.3e-103
Identities = 65/148 (43%), Positives = 83/148 (56%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
+EKRRRRVQEWQ G P+ G+ WTLD E SDDE KS++
Sbjct: 161 VEKRRRRVQEWQELKRQNEEAQIESKG------PETGKAWTLDGE-SDDEV-----KSDS 208
Query: 272 DMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIG---AAEDEDIDPLDAFMNSMVLPEV 328
+MD D + K EN GDA +V S+ +A + G AA++++IDPLDAFMN+MVLPEV
Sbjct: 209 EMDVDRDTK-LENG-GDAKMVASENETAVTVSENGGDRAADEDEIDPLDAFMNTMVLPEV 266
Query: 329 EKLKNTVEPSFTDG--NNVESKKMDRKG 354
EKL N V D N E+ +KG
Sbjct: 267 EKLSNIVIDGILDFKMNGKETGDQAKKG 294
Score = 200 (75.5 bits), Expect = 2.4e-268, Sum P(3) = 2.4e-268
Identities = 40/48 (83%), Positives = 42/48 (87%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 976
RKLYLF+EGPTE SVK AKAELKRVLED TNQ SLPGGAQ GRYSV+
Sbjct: 942 RKLYLFVEGPTEISVKTAKAELKRVLEDITNQTFSLPGGAQSGRYSVL 989
Score = 40 (19.1 bits), Expect = 5.3e-31, Sum P(3) = 5.3e-31
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 445 EVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSK 477
E++ + + K+ K+ PI W +T++
Sbjct: 895 EINDFPQNARWKVTHKETLGPISEWSGASITTR 927
>MGI|MGI:1920895 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1920895
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T ChiTaRS:DDX46 EMBL:AK129220 EMBL:BC026492
EMBL:BC092240 IPI:IPI00468896 IPI:IPI00660556 RefSeq:NP_666087.3
UniGene:Mm.202725 ProteinModelPortal:Q569Z5 SMR:Q569Z5
STRING:Q569Z5 PhosphoSite:Q569Z5 PaxDb:Q569Z5 PRIDE:Q569Z5
Ensembl:ENSMUST00000172272 GeneID:212880 KEGG:mmu:212880
UCSC:uc011yzx.1 InParanoid:Q569Z5 OMA:IEEENKF NextBio:373723
Bgee:Q569Z5 CleanEx:MM_DDX46 Genevestigator:Q569Z5
GermOnline:ENSMUSG00000021500 Uniprot:Q569Z5
Length = 1032
Score = 1544 (548.6 bits), Expect = 9.2e-174, Sum P(3) = 9.2e-174
Identities = 307/587 (52%), Positives = 403/587 (68%)
Query: 293 DSDGGSAAPALQIGAA-EDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G EDE++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGTEMEDEELDPLDAYMEE-VKEEVKKF-NMRSVKGGAGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ ++K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
Score = 100 (40.3 bits), Expect = 9.2e-174, Sum P(3) = 9.2e-174
Identities = 21/70 (30%), Positives = 36/70 (51%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D D+++ + K T
Sbjct: 160 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGT 218
Query: 272 DMDADEEPKP 281
+M+ DEE P
Sbjct: 219 EME-DEELDP 227
Score = 82 (33.9 bits), Expect = 9.2e-174, Sum P(3) = 9.2e-174
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 985 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
Score = 49 (22.3 bits), Expect = 4.7e-05, Sum P(3) = 4.7e-05
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E ++ + E Y ++LE+ D P+ +
Sbjct: 895 KTIAEQLAEKINAKLNYVPLEKQE--EERQEGGQS-ESFKRYEEELEIN----DFPQTAR 947
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 948 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 975
Score = 40 (19.1 bits), Expect = 2.0e-167, Sum P(3) = 2.0e-167
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 261 EEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSD 295
EE+ Q K + D D+E P+E + + D +
Sbjct: 190 EEMKQGKKWSLEDDDDDEDDPAEAEKEGTEMEDEE 224
Score = 39 (18.8 bits), Expect = 2.5e-167, Sum P(3) = 2.5e-167
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 238 GDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
GD++ E+ K D++D +DE+ G + + +E K E
Sbjct: 127 GDSSKEKKK-------DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
>RGD|708480 [details] [associations]
symbol:Ddx46 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 46"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0015030 "Cajal body" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:708480
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0003723 GO:GO:0015030
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 KO:K12811 CTD:9879
HOGENOM:HOG000007229 HOVERGEN:HBG081426 OrthoDB:EOG441Q9T
EMBL:U25746 EMBL:BC107590 IPI:IPI00208266 PIR:A57514
RefSeq:NP_620798.1 UniGene:Rn.3436 ProteinModelPortal:Q62780
STRING:Q62780 PhosphoSite:Q62780 PRIDE:Q62780
Ensembl:ENSRNOT00000029885 GeneID:245957 KEGG:rno:245957
UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 1543 (548.2 bits), Expect = 3.1e-173, Sum P(3) = 3.1e-173
Identities = 307/587 (52%), Positives = 403/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G EDE++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEDEELDPLDAYMEE-VKEEVKKF-NMRSVKGGAGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ ++K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
Score = 96 (38.9 bits), Expect = 3.1e-173, Sum P(3) = 3.1e-173
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D DDE+ P + E
Sbjct: 160 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLE-DDDDDEDDPAEAEKEG 217
Query: 272 DMDADEEPKP 281
+ DEE P
Sbjct: 218 NEMEDEELDP 227
Score = 82 (33.9 bits), Expect = 3.1e-173, Sum P(3) = 3.1e-173
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 985 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E ++ + E Y ++LE+ D P+ +
Sbjct: 895 KTIAEQLAEKINAKLNYVPLEKQE--EERQEGGQS-ESFKRYEEELEIN----DFPQTAR 947
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 948 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 975
Score = 40 (19.1 bits), Expect = 2.5e-167, Sum P(3) = 2.5e-167
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 261 EEVPQTGKSETDMDADEEPKPSE-NQVGDAM 290
EE+ Q K + D D+E P+E + G+ M
Sbjct: 190 EEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220
Score = 39 (18.8 bits), Expect = 3.2e-167, Sum P(3) = 3.2e-167
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 238 GDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
GD++ E+ K D++D +DE+ G + + +E K E
Sbjct: 127 GDSSKEKKK-------DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
Score = 37 (18.1 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 213 EKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETD 272
E+RR R ++ + + + K N + +E ++ + + K + D
Sbjct: 81 ERRRSRSRDRRRSRSRSRGRRSRSSSPGS--KSKKAENRSRSKEKAEGGDSSKEKKKDKD 138
Query: 273 MDADEEPKPSEN 284
DE+ K + N
Sbjct: 139 DKEDEKEKDAGN 150
>UNIPROTKB|Q62780 [details] [associations]
symbol:Ddx46 "Probable ATP-dependent RNA helicase DDX46"
species:10116 "Rattus norvegicus" [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:708480 GO:GO:0005524
GO:GO:0005634 GO:GO:0005730 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
KO:K12811 CTD:9879 HOGENOM:HOG000007229 HOVERGEN:HBG081426
OrthoDB:EOG441Q9T EMBL:U25746 EMBL:BC107590 IPI:IPI00208266
PIR:A57514 RefSeq:NP_620798.1 UniGene:Rn.3436
ProteinModelPortal:Q62780 STRING:Q62780 PhosphoSite:Q62780
PRIDE:Q62780 Ensembl:ENSRNOT00000029885 GeneID:245957
KEGG:rno:245957 UCSC:RGD:708480 InParanoid:Q62780 NextBio:623205
ArrayExpress:Q62780 Genevestigator:Q62780
GermOnline:ENSRNOG00000021637 Uniprot:Q62780
Length = 1032
Score = 1543 (548.2 bits), Expect = 3.1e-173, Sum P(3) = 3.1e-173
Identities = 307/587 (52%), Positives = 403/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G EDE++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEDEELDPLDAYMEE-VKEEVKKF-NMRSVKGGAGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ ++K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDADKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
Score = 96 (38.9 bits), Expect = 3.1e-173, Sum P(3) = 3.1e-173
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D DDE+ P + E
Sbjct: 160 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLE-DDDDDEDDPAEAEKEG 217
Query: 272 DMDADEEPKP 281
+ DEE P
Sbjct: 218 NEMEDEELDP 227
Score = 82 (33.9 bits), Expect = 3.1e-173, Sum P(3) = 3.1e-173
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 985 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
Score = 49 (22.3 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 25/94 (26%), Positives = 47/94 (50%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E ++ + E Y ++LE+ D P+ +
Sbjct: 895 KTIAEQLAEKINAKLNYVPLEKQE--EERQEGGQS-ESFKRYEEELEIN----DFPQTAR 947
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 948 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 975
Score = 40 (19.1 bits), Expect = 2.5e-167, Sum P(3) = 2.5e-167
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 261 EEVPQTGKSETDMDADEEPKPSE-NQVGDAM 290
EE+ Q K + D D+E P+E + G+ M
Sbjct: 190 EEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220
Score = 39 (18.8 bits), Expect = 3.2e-167, Sum P(3) = 3.2e-167
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 238 GDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSE 283
GD++ E+ K D++D +DE+ G + + +E K E
Sbjct: 127 GDSSKEKKK-------DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
Score = 37 (18.1 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 213 EKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETD 272
E+RR R ++ + + + K N + +E ++ + + K + D
Sbjct: 81 ERRRSRSRDRRRSRSRSRGRRSRSSSPGS--KSKKAENRSRSKEKAEGGDSSKEKKKDKD 138
Query: 273 MDADEEPKPSEN 284
DE+ K + N
Sbjct: 139 DKEDEKEKDAGN 150
>UNIPROTKB|F1PK90 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AAEX03007786
Ensembl:ENSCAFT00000001619 Uniprot:F1PK90
Length = 1032
Score = 1540 (547.2 bits), Expect = 1.7e-172, Sum P(3) = 1.7e-172
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
Score = 92 (37.4 bits), Expect = 1.7e-172, Sum P(3) = 1.7e-172
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D D+++ + K
Sbjct: 160 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGN 218
Query: 272 DMDADE 277
+M+ +E
Sbjct: 219 EMEGEE 224
Score = 82 (33.9 bits), Expect = 1.7e-172, Sum P(3) = 1.7e-172
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 985 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
Score = 50 (22.7 bits), Expect = 4.6e-168, Sum P(3) = 4.6e-168
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 213 EKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETD 272
E+RR R ++ + N + K N + +E +D E + K + D
Sbjct: 81 ERRRSRSRDRRRSRSRSRGRRSRSSSPGN--KSKKAENRSRSKEKTDSGESSKEKKKDKD 138
Query: 273 MDADEEPKPSEN 284
DE+ K + N
Sbjct: 139 DKEDEKEKDAGN 150
Score = 48 (22.0 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E ++ E Y ++LE+ D P+ +
Sbjct: 895 KTIAEQLAEKINAKLNYVPLEKQE--EERQDGGQN-ESFKRYEEELEIN----DFPQTAR 947
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 948 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 975
Score = 40 (19.1 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 261 EEVPQTGKSETDMDADEEPKPSE-NQVGDAM 290
EE+ Q K + D D+E P+E + G+ M
Sbjct: 190 EEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220
Score = 38 (18.4 bits), Expect = 8.4e-167, Sum P(3) = 8.4e-167
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSE 283
D++D +DE+ G + + +E K E
Sbjct: 136 DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
>UNIPROTKB|Q7L014 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0015030 "Cajal body" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12811 EMBL:AF106680 EMBL:AB018344 EMBL:BC012304 EMBL:BK000565
IPI:IPI00329791 RefSeq:NP_055644.2 UniGene:Hs.406549
ProteinModelPortal:Q7L014 SMR:Q7L014 IntAct:Q7L014
MINT:MINT-3002486 STRING:Q7L014 PhosphoSite:Q7L014 DMDM:116241326
PaxDb:Q7L014 PeptideAtlas:Q7L014 PRIDE:Q7L014
Ensembl:ENST00000354283 Ensembl:ENST00000452510 GeneID:9879
KEGG:hsa:9879 UCSC:uc003kzw.3 CTD:9879 GeneCards:GC05P134094
HGNC:HGNC:18681 HPA:HPA036554 neXtProt:NX_Q7L014
PharmGKB:PA134894452 HOGENOM:HOG000007229 HOVERGEN:HBG081426
InParanoid:Q7L014 OrthoDB:EOG441Q9T ChiTaRS:DDX46 GenomeRNAi:9879
NextBio:37233 PMAP-CutDB:Q7L014 ArrayExpress:Q7L014 Bgee:Q7L014
CleanEx:HS_DDX46 Genevestigator:Q7L014 GermOnline:ENSG00000145833
Uniprot:Q7L014
Length = 1031
Score = 1540 (547.2 bits), Expect = 1.7e-172, Sum P(3) = 1.7e-172
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
Score = 92 (37.4 bits), Expect = 1.7e-172, Sum P(3) = 1.7e-172
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D D+++ + K
Sbjct: 160 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGN 218
Query: 272 DMDADE 277
+M+ +E
Sbjct: 219 EMEGEE 224
Score = 82 (33.9 bits), Expect = 1.7e-172, Sum P(3) = 1.7e-172
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 984 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1031
Score = 48 (22.0 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E ++ E Y ++LE+ D P+ +
Sbjct: 894 KTIAEQLAEKINAKLNYVPLEKQE--EERQDGGQN-ESFKRYEEELEIN----DFPQTAR 946
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 947 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 974
Score = 47 (21.6 bits), Expect = 9.5e-168, Sum P(3) = 9.5e-168
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 213 EKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETD 272
E+RR R ++ + N + K N + +E +D E + K + D
Sbjct: 81 ERRRSRSRDRRRSRSRSRGRRSRSSSPGN--KSKKTENRSRSKEKTDGGESSKEKKKDKD 138
Query: 273 MDADEEPKPSEN 284
DE+ K + N
Sbjct: 139 DKEDEKEKDAGN 150
Score = 40 (19.1 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 261 EEVPQTGKSETDMDADEEPKPSE-NQVGDAM 290
EE+ Q K + D D+E P+E + G+ M
Sbjct: 190 EEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220
Score = 38 (18.4 bits), Expect = 8.4e-167, Sum P(3) = 8.4e-167
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSE 283
D++D +DE+ G + + +E K E
Sbjct: 136 DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
>UNIPROTKB|I3LR20 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:FP312757
Ensembl:ENSSSCT00000027801 Uniprot:I3LR20
Length = 1032
Score = 1541 (547.5 bits), Expect = 2.8e-172, Sum P(3) = 2.8e-172
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEVEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
Score = 89 (36.4 bits), Expect = 2.8e-172, Sum P(3) = 2.8e-172
Identities = 21/70 (30%), Positives = 33/70 (47%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D DDE+ P + E
Sbjct: 160 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLE-DDDDDEDDPAEAEKEG 217
Query: 272 DMDADEEPKP 281
+ EE P
Sbjct: 218 NEVEGEELDP 227
Score = 82 (33.9 bits), Expect = 2.8e-172, Sum P(3) = 2.8e-172
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 985 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
Score = 48 (22.0 bits), Expect = 0.00080, Sum P(3) = 0.00080
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E ++ E Y ++LE+ D P+ +
Sbjct: 895 KTIAEQLAEKINAKLNYVPLEKQE--EERQDGGQN-ESFKRYEEELEIN----DFPQTAR 947
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 948 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 975
Score = 47 (21.6 bits), Expect = 7.4e-168, Sum P(3) = 7.4e-168
Identities = 15/72 (20%), Positives = 28/72 (38%)
Query: 213 EKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETD 272
++RR R ++ + N + K N + +E +D E + K + D
Sbjct: 81 DRRRSRSRDRRRSRSRSRGRRSRSSSPGN--KSKKAENRSRSKEKTDSGESSKEKKKDKD 138
Query: 273 MDADEEPKPSEN 284
DE+ K + N
Sbjct: 139 DKEDEKEKDAGN 150
Score = 39 (18.8 bits), Expect = 5.2e-167, Sum P(3) = 5.2e-167
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 261 EEVPQTGKSETDMDADEEPKPSE 283
EE+ Q K + D D+E P+E
Sbjct: 190 EEMKQGKKWSLEDDDDDEDDPAE 212
Score = 38 (18.4 bits), Expect = 6.6e-167, Sum P(3) = 6.6e-167
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSE 283
D++D +DE+ G + + +E K E
Sbjct: 136 DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
>UNIPROTKB|F1MX40 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:DAAA02020348
EMBL:DAAA02020349 IPI:IPI00703383 Ensembl:ENSBTAT00000028682
Uniprot:F1MX40
Length = 1032
Score = 1538 (546.5 bits), Expect = 2.8e-172, Sum P(3) = 2.8e-172
Identities = 307/587 (52%), Positives = 402/587 (68%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 204 DDDEDDPAEAEKEGNEMEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 261
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 262 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 314
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 315 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSLEEVNVFRLEMEGITVKGKGCPKPIKSW 374
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 375 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 434
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 435 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 494
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDR
Sbjct: 495 GAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDR 554
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTV+FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E +FL+LLELLG
Sbjct: 555 QTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQQVIVIEEEKKFLKLLELLG 614
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E G ++IFV QE D L +DL++ YPC+SLHG DQ DR+S I+DFK+ C LL+
Sbjct: 615 HYQESGSVIIFVDKQEHADGLLKDLMRASYPCMSLHGGIDQYDRDSIINDFKNGTCKLLV 674
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
ATSVAARGLDVK L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D+
Sbjct: 675 ATSVAARGLDVKHLILVVNYSCPNHYEDYVHRAGRTGRAGNKGYAYTFITEDQARYAGDI 734
Query: 830 VKALELSEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
+KALELS VP DL+ L F + +G +G+ G GFKF+
Sbjct: 735 IKALELSGTAVPPDLEKLWSDFKDQQKAEGKIIKKSSGFSGKGFKFD 781
Score = 92 (37.4 bits), Expect = 2.8e-172, Sum P(3) = 2.8e-172
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D D+++ + K
Sbjct: 160 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGN 218
Query: 272 DMDADE 277
+M+ +E
Sbjct: 219 EMEGEE 224
Score = 82 (33.9 bits), Expect = 2.8e-172, Sum P(3) = 2.8e-172
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 985 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1032
Score = 50 (22.7 bits), Expect = 7.4e-168, Sum P(3) = 7.4e-168
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 213 EKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSETD 272
E+RR R ++ + N + K N + +E +D E + K + D
Sbjct: 81 ERRRSRSRDRRRSRSRSRGRRSRSSSPGN--KSKKAENRSRSKEKTDSGESSKEKKKDKD 138
Query: 273 MDADEEPKPSEN 284
DE+ K + N
Sbjct: 139 DKEDEKEKDAGN 150
Score = 48 (22.0 bits), Expect = 0.00039, Sum P(3) = 0.00039
Identities = 25/94 (26%), Positives = 46/94 (48%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E ++ E Y ++LE+ D P+ +
Sbjct: 895 KTIAEQLAEKINAKLNYVPLEKQE--EERQDGGQN-ESFKRYEEELEIN----DFPQTAR 947
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 948 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 975
Score = 40 (19.1 bits), Expect = 8.4e-167, Sum P(3) = 8.4e-167
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 261 EEVPQTGKSETDMDADEEPKPSE-NQVGDAM 290
EE+ Q K + D D+E P+E + G+ M
Sbjct: 190 EEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 220
Score = 38 (18.4 bits), Expect = 1.4e-166, Sum P(3) = 1.4e-166
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSE 283
D++D +DE+ G + + +E K E
Sbjct: 136 DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 165
>FB|FBgn0030631 [details] [associations]
symbol:CG6227 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014298 GO:GO:0005681 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
HSSP:Q58083 GeneTree:ENSGT00610000086076 KO:K12811 OMA:RGRYKVL
EMBL:FJ764847 EMBL:FJ764848 EMBL:FJ764851 EMBL:FJ764853
EMBL:FJ764855 EMBL:FJ764858 FlyBase:FBgn0030631 EMBL:BT016090
RefSeq:NP_573020.2 UniGene:Dm.168 SMR:Q9VXW2 IntAct:Q9VXW2
EnsemblMetazoa:FBtr0074011 GeneID:32464 KEGG:dme:Dmel_CG6227
UCSC:CG6227-RA InParanoid:Q9VXW2 GenomeRNAi:32464 NextBio:778600
Uniprot:Q9VXW2
Length = 1224
Score = 1511 (537.0 bits), Expect = 2.4e-171, Sum P(4) = 2.4e-171
Identities = 282/466 (60%), Positives = 361/466 (77%)
Query: 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWH 470
++L+ +DHS + Y PFRKNFY+EV E+ RMT +V YR LE +++ GK PKPIKTW
Sbjct: 454 KELAKIDHSSVTYAPFRKNFYVEVPELTRMTAADVEKYRSDLEGIQVKGKGCPKPIKTWA 513
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
Q G++ K ME +R+L +EKP PIQ QA+P IMSGRD IG+AKTGSGKTLAF+LPM RHI
Sbjct: 514 QCGVSKKEMEVLRRLGFEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFILPMFRHIL 573
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
DQP + GDG + +IMAPTREL QI DIRKF+K +G+R V VYGG+G+++QI+ELKRG
Sbjct: 574 DQPSMEDGDGAIAIIMAPTRELCMQIGKDIRKFSKSLGLRPVCVYGGTGISEQIAELKRG 633
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RI+ N+RPDRQ
Sbjct: 634 AEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIIDNVRPDRQ 693
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710
TV+FSATFPRQ+E LAR++L KP+E+ VGGRSVV K++ Q V + + +F +LLELLG
Sbjct: 694 TVMFSATFPRQMEALARRILKKPIEVIVGGRSVVCKEVEQHVVILNDDAKFFKLLELLGI 753
Query: 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
+ E G I++FV QE D L RDL+K YPC+SLHG DQ DR+STI DFKS LLIA
Sbjct: 754 YQEAGSIIVFVDKQENADILLRDLMKASYPCMSLHGGIDQFDRDSTIIDFKSGKVRLLIA 813
Query: 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830
TSVAARGLDVK+L LV+N+D PNHYEDYVHR GRTGRAG+KG A TFI+ E ++Y+ D++
Sbjct: 814 TSVAARGLDVKDLILVVNYDVPNHYEDYVHRCGRTGRAGKKGSAYTFITPEQSRYAGDII 873
Query: 831 KALELSEQVVPDDLKALADSFMAKVNQGLEQAH-GTGYGGSGFKFN 875
+A++LS ++P +L+AL + A + H G G+ G GFKF+
Sbjct: 874 RAMDLSGTLIPAELQALWTEYKALQEAEGKTVHTGGGFSGKGFKFD 919
Score = 76 (31.8 bits), Expect = 2.4e-171, Sum P(4) = 2.4e-171
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSVV 976
RKLYL IE +E +V++AK E+ R++++ + S GRY VV
Sbjct: 1177 RKLYLAIESCSELAVQKAKREITRLIKEELLKLSSAHHVFNKGRYKVV 1224
Score = 65 (27.9 bits), Expect = 2.4e-171, Sum P(4) = 2.4e-171
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KRR R++ W+ N + + W+L+ E +D+ P
Sbjct: 194 MIKRRERIERWRAERKRDTKAAVVAPSLVN-----SAKKWSLEDESEEDDSNPAPPLDSG 248
Query: 272 DMDADEEPKPSE 283
DA+ + PS+
Sbjct: 249 KKDAEPDSPPSK 260
Score = 63 (27.2 bits), Expect = 2.4e-171, Sum P(4) = 2.4e-171
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 308 AEDED-IDPLDAFMNSMVLPEVEKLKNTVEP 337
AE ED IDPLDA+M V E+ ++ N V P
Sbjct: 367 AEPEDEIDPLDAYMQE-VNNEMRRVNNFVNP 396
Score = 45 (20.9 bits), Expect = 7.5e-164, Sum P(3) = 7.5e-164
Identities = 26/131 (19%), Positives = 50/131 (38%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDI 313
++E ++E + + E + D D E + D+ + P L +E+E +
Sbjct: 120 EKEREREKEKEREKEKERERDKDRERDRQREKESDSRRAAAAAPLIIPLLSTSCSEEE-V 178
Query: 314 DPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKK-SSNKSLG 372
+ +D L E E +K +E + +RK D ++ P +S K
Sbjct: 179 EEIDKEEQQRRL-EQEMIKRR--------ERIERWRAERKRDTKAAVVAPSLVNSAKKWS 229
Query: 373 RIIPGEDSDSD 383
E+ DS+
Sbjct: 230 LEDESEEDDSN 240
Score = 43 (20.2 bits), Expect = 4.9e-169, Sum P(4) = 4.9e-169
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 238 GDANV-EEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEP 279
G N+ E+ K G++ DR DD+ + +S+ D + D P
Sbjct: 60 GSRNMREDRKRGKDMISDRGKRDDKR-RKCSRSK-DYEKDNSP 100
>ZFIN|ZDB-GENE-030131-667 [details] [associations]
symbol:ddx46 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 46" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IMP] [GO:0031017 "exocrine
pancreas development" evidence=IMP] [GO:0007420 "brain development"
evidence=IMP] [GO:0048546 "digestive tract morphogenesis"
evidence=IMP] [GO:0072576 "liver morphogenesis" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-667
GO:GO:0005524 GO:GO:0007420 GO:GO:0003676 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0048546
GO:GO:0008026 GO:GO:0031017 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF GO:GO:0072576
EMBL:CU302316 IPI:IPI00865887 Ensembl:ENSDART00000099265
ArrayExpress:F1RA00 Bgee:F1RA00 Uniprot:F1RA00
Length = 1035
Score = 1564 (555.6 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 328/625 (52%), Positives = 421/625 (67%)
Query: 261 EEVPQTGKS---ETDMDADEE-PKPSENQVGDAMLVDSDGGSAAPALQIGAAE-DEDIDP 315
EE+ Q GK E D D DEE P P E GD A + ++ E E++DP
Sbjct: 158 EEMKQ-GKKWSLEDDDDDDEEAPAPVEPD-GDDEEEQDKAAEAEESERMEEEEVGEEVDP 215
Query: 316 LDAFMNSMVLPEVEKLK-NTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKS--SNKSLG 372
LDA+M V EV+K T++ G N KK + + KK + K G
Sbjct: 216 LDAYMEE-VKEEVKKFNMGTMK-----GAN--DKKGGMSVTKVVTVVKTKKMPHATKKKG 267
Query: 373 RIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFY 432
++ + +Y F + +K L VDH KI Y+PFRKNFY
Sbjct: 268 ELMENDQDAMEYSSEEEEVDLQTALTG--FQTKQRKV----LEPVDHQKIQYEPFRKNFY 321
Query: 433 IEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPM 491
+EV E+ARM+PEEVS YR +LE + + GK PKPIKTW Q G++ K++ ++K NYEKP
Sbjct: 322 VEVPELARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPT 381
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
PIQAQA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI DQ PV +GP+ +IM PTRE
Sbjct: 382 PIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRE 441
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 611
L QI + +KF+K + +R V VYGG+G+++QI+ELKRG EI+VCTPGRMID+L + G+
Sbjct: 442 LALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGR 501
Query: 612 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLN 671
+TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDRQTV+FSATFPR +E LAR++L+
Sbjct: 502 VTNLRRVTYVVIDEADRMFDMGFEPQVMRIVDNVRPDRQTVMFSATFPRTMEALARRILS 561
Query: 672 KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALF 731
KPVE+QVGGRSVV D+ Q V V E +FL+LLE+LG + EKG ++IFV QE D L
Sbjct: 562 KPVEVQVGGRSVVCSDVEQHVIVIEEEKKFLKLLEILGHYQEKGSVIIFVDKQEHADGLL 621
Query: 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA 791
+DL+K YPC+SLHG DQ DR+S I+DFK+ C LL+ATSVAARGLDVK+L LV+N+
Sbjct: 622 KDLMKASYPCMSLHGGIDQYDRDSIINDFKNGACRLLVATSVAARGLDVKQLILVVNYSC 681
Query: 792 PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851
PNHYEDYVHR GRTGRAG KG A TFI+E A+YS D++KALELS VP +L+ L +F
Sbjct: 682 PNHYEDYVHRAGRTGRAGNKGYAYTFITEGQARYSGDILKALELSGSSVPAELEQLWTNF 741
Query: 852 MAKVN-QGLEQAHGTGYGGSGFKFN 875
+ +G +G+ G GFKF+
Sbjct: 742 KEQQKAEGKIIKSSSGFSGKGFKFD 766
Score = 128 (50.1 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 36/119 (30%), Positives = 59/119 (49%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D DDEE P + +
Sbjct: 128 MRKRKERVEKWREEQRKKAMENIGEI-KKELEEMKQGKKWSLEDDDDDDEEAPAPVEPDG 186
Query: 272 DMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEK 330
D D +E+ K +E + + M + ++G E++DPLDA+M V EV+K
Sbjct: 187 D-DEEEQDKAAEAEESERMEEE----------EVG----EEVDPLDAYMEE-VKEEVKK 229
Score = 82 (33.9 bits), Expect = 5.6e-167, Sum P(2) = 5.6e-167
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 988 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTSKGRYKVL 1035
Score = 56 (24.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+ + ++K++Y P K +E + A E V Y ++LE+ D P+ +
Sbjct: 898 KTIAEQQAEKINAKLNYTPVEK---LEEERQAAEAAETVKRYEEELEIN----DFPQTAR 950
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E ++++ Y E + I+ P
Sbjct: 951 -WK---VTSK--EALQRIGEYSEAAITIRGTYFP 978
>UNIPROTKB|E1BSC0 [details] [associations]
symbol:DDX46 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:IEEENKF EMBL:AADN02028359
IPI:IPI00577115 Ensembl:ENSGALT00000010339 Uniprot:E1BSC0
Length = 1031
Score = 1556 (552.8 bits), Expect = 3.9e-166, Sum P(2) = 3.9e-166
Identities = 318/643 (49%), Positives = 429/643 (66%)
Query: 239 DAN-VEEPKAGRNWTLD--REDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSD 295
D N +EE R ++ RE+ + + G+ + +++ ++ K + D D D
Sbjct: 151 DQNKLEEEMRKRKERVEKWREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDD----DDD 206
Query: 296 GGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGD 355
+A + EDE++DPLDA+M V EV+K N G+ +S K
Sbjct: 207 EETAEGEKEGNEVEDEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGSEKKSGPTVTKVV 264
Query: 356 RRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKL- 414
++ + K G ++ + +Y +TK KL
Sbjct: 265 TVVTTKKAVVETEKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQRKLL 317
Query: 415 SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTG 473
VDH KI+Y+PFRKNFY+EV E+A+MT EEV+ YR ++E + + GK PKPIKTW Q G
Sbjct: 318 EPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLEMEGITVKGKGCPKPIKTWVQCG 377
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
++ KI+ ++K YEKP PIQ+QA+P IM+GRD IG+AKTGSGKT+AF+LPM RHI DQ
Sbjct: 378 ISMKILTALKKHGYEKPTPIQSQAIPAIMNGRDLIGIAKTGSGKTIAFLLPMFRHIMDQR 437
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
+ G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKRG EI
Sbjct: 438 ALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKRGAEI 497
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ RIV N+RPDRQTV+
Sbjct: 498 IVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIVDNVRPDRQTVM 557
Query: 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713
FSATFPR +E LAR++L+KP+E+QVGGRSVV D+ Q V V E ++FL+LLELLG + E
Sbjct: 558 FSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEENKFLKLLELLGHYQE 617
Query: 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773
KG ++IFV QE D L +DL++ YPCLSLHG DQ DR+S I+DFK+ C LL+ATSV
Sbjct: 618 KGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQYDRDSIINDFKNGTCKLLVATSV 677
Query: 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833
AARGLDVK+L LV+N+ PNHYEDYVHR GRTGRAG KG A TFI+E+ A+Y+ D++KAL
Sbjct: 678 AARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNKGFAYTFITEDQARYAGDIIKAL 737
Query: 834 ELSEQVVPDDLKAL-ADSFMAKVNQGLEQAHGTGYGGSGFKFN 875
ELS +P DL+ L AD + +G +G+ G GFKF+
Sbjct: 738 ELSGNPIPADLEKLWADFKEQQKAEGKLIKKSSGFSGKGFKFD 780
Score = 102 (41.0 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 23/70 (32%), Positives = 35/70 (50%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D DDEE + G+ E
Sbjct: 159 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDDEETAE-GEKEG 216
Query: 272 DMDADEEPKP 281
+ DEE P
Sbjct: 217 NEVEDEELDP 226
Score = 82 (33.9 bits), Expect = 3.9e-166, Sum P(2) = 3.9e-166
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
RK+YL IE E +V++AKAE+ R++++ + + L QP GRY V+
Sbjct: 984 RKIYLAIESANELAVQKAKAEITRLIKE---ELIRLQNSYQPTNKGRYKVL 1031
Score = 51 (23.0 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIK 467
KT AE+L+ ++K++Y P K E K+ E Y ++LE+ D P+ +
Sbjct: 894 KTIAEQLAEKINAKLNYVPIEKQE--EEKQDGGQN-ESFKRYEEELEIN----DFPQTAR 946
Query: 468 TWHQTGLTSKIMETIRKLN-Y-EKPMPIQAQALP 499
W +TSK E +++++ Y E + I+ P
Sbjct: 947 -WK---VTSK--EALQRISEYSEAAITIRGTYFP 974
>POMBASE|SPCC10H11.01 [details] [associations]
symbol:prp11 "ATP-dependent RNA helicase Prp11"
species:4896 "Schizosaccharomyces pombe" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0044732 "mitotic spindle pole body" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC10H11.01 GO:GO:0005829 GO:GO:0005524
EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0044732 GO:GO:0005681
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045292 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12811 HOGENOM:HOG000007229 EMBL:AB027964
RefSeq:NP_587856.1 ProteinModelPortal:Q9P7C7 DIP:DIP-59804N
IntAct:Q9P7C7 PRIDE:Q9P7C7 EnsemblFungi:SPCC10H11.01.1
GeneID:2538936 KEGG:spo:SPCC10H11.01 OMA:SLVIIYN OrthoDB:EOG40CMR1
NextBio:20800113 Uniprot:Q9P7C7
Length = 1014
Score = 1465 (520.8 bits), Expect = 2.2e-164, Sum P(3) = 2.2e-164
Identities = 278/469 (59%), Positives = 352/469 (75%)
Query: 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKP 465
K++K + + VDHSKI+Y+ F+K+FY+E +E+ ++P EV R L+ +KI G D PKP
Sbjct: 357 KRSKKKDVITVDHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKP 416
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+ +W Q GL+++ + I L YEKP IQAQA+P I SGRD IGVAKTGSGKT+AF+LPM
Sbjct: 417 VTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPM 476
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
RHIKDQ P+ G+GP+ +IM PTREL QI + + F K++ +R YGG+ + QI+
Sbjct: 477 FRHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIA 536
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
+LKRG EIVVCTPGRMID+L + G++TNL R TYLV+DEADRMFD+GFEPQ+ RI+ NI
Sbjct: 537 DLKRGAEIVVCTPGRMIDVLSANAGRVTNLHRCTYLVLDEADRMFDLGFEPQVMRIINNI 596
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705
RPDRQTVLFSATFPR +E LARKVL KPVEI VGGRSVV ++ Q+VEVRPE +F RLL
Sbjct: 597 RPDRQTVLFSATFPRAMEALARKVLKKPVEITVGGRSVVASEVEQIVEVRPEESKFSRLL 656
Query: 706 ELLGEWYEKG---KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
ELLGE Y + L+FV QE DAL DL+K GY S+HG KDQ DR+STISD+K+
Sbjct: 657 ELLGELYNNQLDVRTLVFVDRQESADALLSDLMKRGYTSNSIHGGKDQHDRDSTISDYKA 716
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
V ++LIATSV ARGLDVK L+LV+N+D PNH EDYVHRVGRTGRAG G A+TFI+ E
Sbjct: 717 GVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGRTGRAGHTGVAVTFITPEQ 776
Query: 823 AKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSG 871
KY+ D+ KAL++S+Q VP +L+ LA F+ KV G E+A G G+GG G
Sbjct: 777 EKYAVDIAKALKMSKQPVPKELQTLASQFLEKVKAGKEKAAGGGFGGKG 825
Score = 105 (42.0 bits), Expect = 2.2e-164, Sum P(3) = 2.2e-164
Identities = 27/50 (54%), Positives = 34/50 (68%)
Query: 930 KLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP---GRYSVV 976
KLYL+IEGP+E V RA EL+R+L + N SL GG +P GRY+VV
Sbjct: 967 KLYLWIEGPSELVVNRAITELRRLLLEGINH--SLEGGNKPSASGRYTVV 1014
Score = 67 (28.6 bits), Expect = 2.2e-164, Sum P(3) = 2.2e-164
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 268 KSETDMDADEEPKPSENQVGDAM-LVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMV 324
K + D+E P + D L D + Q + E++++DPLDA+M S+V
Sbjct: 256 KRNNRVHMDDEDGPRRMNLEDYQELWDQEDRGMLGNEQAASMEEDEVDPLDAYMASLV 313
>DICTYBASE|DDB_G0275443 [details] [associations]
symbol:helB1 "putative RNA splicing factor"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=ISS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0275443 GO:GO:0005524
GO:GO:0006397 GenomeReviews:CM000151_GR GO:GO:0005681 GO:GO:0003676
EMBL:AAFI02000013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000375 HSSP:P09052 EMBL:X81823 RefSeq:XP_643509.1
ProteinModelPortal:Q553B1 PRIDE:Q553B1 EnsemblProtists:DDB0191329
GeneID:8620090 KEGG:ddi:DDB_G0275443 KO:K12811 OMA:SVVAPEI
ProtClustDB:CLSZ2500419 Uniprot:Q553B1
Length = 1151
Score = 1455 (517.2 bits), Expect = 9.6e-164, Sum P(3) = 9.6e-164
Identities = 280/473 (59%), Positives = 355/473 (75%)
Query: 404 KRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVP 463
K +KK K E L DH+ I Y F+KNFYIEV +A MT EV +R +L +KI GKD P
Sbjct: 447 KTIKKGKKEMLH-TDHTSIKYAEFQKNFYIEVPVLANMTETEVLDFRSELGVKITGKDCP 505
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
KPI++W Q GLT K+ ++K YEKP IQAQ +P IM+GRD IG+A+TGSGKTLAF+L
Sbjct: 506 KPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLL 565
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
PM RHI QP A G+G + LIM+PTREL QIH + +KF+KV+G+R VYGG+ +++Q
Sbjct: 566 PMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQ 625
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
I+ELKRG +IVVCTPGRMIDILC + +ITNLRRVT+LV+DEADRMFDMGF PQI IV
Sbjct: 626 IAELKRGADIVVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMGFGPQINCIVD 685
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+IRPDRQT++FSATFP +VE +A+K+LNKP+EI GGRS+V+ DI Q VEVRP RF R
Sbjct: 686 SIRPDRQTIMFSATFPPKVENVAKKILNKPLEIIAGGRSIVSSDIEQFVEVRPTETRFRR 745
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L+ELL WY KG+ILIF + QE D L+R L Y CLSLHG+KDQTDR+ TISDFK+
Sbjct: 746 LIELLSIWYHKGQILIFTNRQETTDNLYRQLSNSQYQCLSLHGSKDQTDRDETISDFKNK 805
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
V +LIAT +A+RGLD+K+L LV+NFD P+H EDYVHRVGRTGRAG +G A TFI+ ++
Sbjct: 806 VKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGRAGNRGTAYTFITPDEE 865
Query: 824 KYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHG-TGYGGSGFKFN 875
++S ++KALE S VPD+L+ L D++ K +G + TG+ G G KF+
Sbjct: 866 RFSSSIIKALEQSGSKVPDELRKLNDTYEKKRKEGKDVLLAPTGFTGRGHKFD 918
Score = 98 (39.6 bits), Expect = 9.6e-164, Sum P(3) = 9.6e-164
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQPGRYSV 975
RKLYL+IEGP++ SVK AK+++K++L++ + S G+YSV
Sbjct: 1110 RKLYLYIEGPSDASVKNAKSDIKKILDEVQSTHQST------GKYSV 1150
Score = 78 (32.5 bits), Expect = 9.6e-164, Sum P(3) = 9.6e-164
Identities = 28/125 (22%), Positives = 52/125 (41%)
Query: 249 RNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAA 308
+ W+L+ E EE Q T+++ E P + A + ++
Sbjct: 342 KKWSLEEE----EETAQP-LVNTNIEQKEIKLPPTANIPAAAATTTSATINTTTIKQSIE 396
Query: 309 EDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQP--KKS 366
ED+DIDPLDA+M ++ LK + D + +K++ + + +G+ KK
Sbjct: 397 EDDDIDPLDAYMENLNKEANLNLKKSKTSQMID----DDEKLEEESEGEDDGKDKTIKKG 452
Query: 367 SNKSL 371
+ L
Sbjct: 453 KKEML 457
>ASPGD|ASPL0000055571 [details] [associations]
symbol:AN1266 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0003676 EMBL:AACD01000017
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12811
OMA:SVVAPEI HOGENOM:HOG000007229 OrthoDB:EOG40CMR1
RefSeq:XP_658870.1 ProteinModelPortal:Q5BDW4
EnsemblFungi:CADANIAT00001356 GeneID:2877043 KEGG:ani:AN1266.2
Uniprot:Q5BDW4
Length = 1173
Score = 1475 (524.3 bits), Expect = 2.0e-158, Sum P(2) = 2.0e-158
Identities = 308/649 (47%), Positives = 415/649 (63%)
Query: 240 ANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGS- 298
A+ E+ A + E+S ++ + D DAD K +E D VD G
Sbjct: 313 ADNEKSIATKTLGFGEEESTRRKLERLPTPPLD-DADAS-KTAETNADDDDDVDMQDGET 370
Query: 299 ---AAPALQIGAAEDEDI---DPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDR 352
AA A ++ A E+ + L N + E+ + +E D E +D
Sbjct: 371 EEDAAAAARVAAERREERLQNESLTKTTNGNTTAKAEEA-DKME---VDAQEEELDPLDA 426
Query: 353 KGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXX-FMKRVKKTKA 411
+ PKK + + ++ ++ +G F+ K K
Sbjct: 427 FMSELAESAPPKKKAGAKFSK---AQEPEAIFGDEHDVSMTAVGEGDAEDFLAIASKAKK 483
Query: 412 EK-LSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
+K + VDH+K++Y+PFR+ FY E ++A+M+ EE + R +L+ +K+ G DVPKP++ W
Sbjct: 484 KKDIPTVDHNKVEYEPFRRKFYTEPSDLAQMSEEEAANLRLELDGIKVRGLDVPKPVQKW 543
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q GL + ++ I KL + IQAQA+P IMSGRD IGVAKTGSGKT+AF++PM RHI
Sbjct: 544 SQCGLGIQTLDVIDKLGFASLTSIQAQAIPAIMSGRDVIGVAKTGSGKTMAFLIPMFRHI 603
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
KDQ P+ +GP+GLIM PTREL QIH D + F K + +R V YGG+ + QI+ELKR
Sbjct: 604 KDQRPLENMEGPIGLIMTPTRELATQIHKDCKPFLKALNLRAVCAYGGAPIKDQIAELKR 663
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G EI+VCTPGRMID+L + G++TNLRRVTY+V+DEADRMFDMGFEPQ+ +I+ N+RPDR
Sbjct: 664 GAEIIVCTPGRMIDLLAANAGRVTNLRRVTYVVLDEADRMFDMGFEPQVMKILSNVRPDR 723
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
QTVLFSATFPR +E LARK L KP+EI VGGRSVV +ITQ+VEV E +F+RLLELLG
Sbjct: 724 QTVLFSATFPRNMEALARKTLTKPIEIVVGGRSVVAPEITQIVEVCNEEKKFVRLLELLG 783
Query: 710 EWY-----EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764
Y E + LIFV QE D L R+L++ GYPC+S+HG KDQ DR+STI DFK+ +
Sbjct: 784 NLYSTDENEDARSLIFVDRQEAADTLLRELMRKGYPCMSIHGGKDQIDRDSTIEDFKAGI 843
Query: 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824
+LIATSVAARGLDVK+L+LV+N+DAPNH EDYVHR GRTGRAG G A+TF++E+ +
Sbjct: 844 FPVLIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFLTEDQER 903
Query: 825 YSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFK 873
YS D+ KAL+ S Q VP+ ++ L DSF+ KV G E+A +G+GG G +
Sbjct: 904 YSVDIAKALKQSGQEVPEAVQKLVDSFLEKVKAGKEKASNSGFGGKGLE 952
Score = 90 (36.7 bits), Expect = 2.0e-158, Sum P(2) = 2.0e-158
Identities = 23/48 (47%), Positives = 29/48 (60%)
Query: 930 KLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP-GRYSVV 976
KLY+ +EG TE SV A EL R+L++ T A+ A GRYSVV
Sbjct: 1126 KLYILVEGETELSVTNAMRELMRLLKEGTIAAVDSESRAPASGRYSVV 1173
>WB|WBGene00018776 [details] [associations]
symbol:F53H1.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0002119 GO:GO:0040011 GO:GO:0040018 GO:GO:0003676
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 GeneTree:ENSGT00610000086076 KO:K12811
HOGENOM:HOG000007229 OMA:IEEENKF EMBL:FO081458
RefSeq:NP_001033411.1 ProteinModelPortal:Q965K2 SMR:Q965K2
PaxDb:Q965K2 PRIDE:Q965K2 EnsemblMetazoa:F53H1.1 GeneID:176943
KEGG:cel:CELE_F53H1.1 UCSC:F53H1.1 CTD:176943 WormBase:F53H1.1
InParanoid:Q965K2 NextBio:894678 ArrayExpress:Q965K2 Uniprot:Q965K2
Length = 970
Score = 1420 (504.9 bits), Expect = 1.3e-153, Sum P(3) = 1.3e-153
Identities = 308/656 (46%), Positives = 417/656 (63%)
Query: 239 DANVEEPKAGRNWTLDREDS--DDEEVPQTGKSETDMDADEEPKPSEN----QVGDAMLV 292
DA ++ K + + E+S D EEV + ++E + + E + + + +
Sbjct: 64 DAEKKKEKESKTAIFEMEESRNDTEEVMKMKEAELLQGVERRRRNVEKWRAQKKKEELDL 123
Query: 293 DSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVE-KLKNTVEPSFTDGNNVESKKMD 351
S+ + EDED + N + E K++ VE TD E +D
Sbjct: 124 QSEQSDEKSEKKPWNLEDEDDEDEFDIKNEGISEENPVKMEEKVEKMDTDD---EEDPLD 180
Query: 352 R--KGDRRSNGEQPKKSSNKSLG--RIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVK 407
K N ++ S+ K+ G I+ E + + G ++
Sbjct: 181 AFMKEIATKNAKKTGNSTQKASGIVTIVQEEKPEPEKGQVLENEDNMDMVIDDFDIETAA 240
Query: 408 KT---KAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVP 463
+ K L+ DHSK+ Y+ F+KNFYIE +EI RMT EV AYR++L+ + + G D P
Sbjct: 241 ASLCHKGRMLAQTDHSKVYYRKFKKNFYIETEEIRRMTKAEVKAYREELDSITVKGIDCP 300
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
KPIKTW Q G+ K+M ++K Y KP IQAQA+P IMSGRD IG+AKTGSGKTLAF+L
Sbjct: 301 KPIKTWAQCGVNLKMMNVLKKFEYSKPTSIQAQAIPSIMSGRDVIGIAKTGSGKTLAFLL 360
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
PM RHI DQP + GDGP+ +I+APTREL Q + + KFAK +G++ YGG G+++Q
Sbjct: 361 PMFRHILDQPELEEGDGPIAVILAPTRELAMQTYKEANKFAKPLGLKVACTYGGVGISEQ 420
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
I++LKRG EIVVCTPGRMID+L + GK+TNLRRVTYLV+DEADRMFD GFEPQI ++V
Sbjct: 421 IADLKRGAEIVVCTPGRMIDVLAANSGKVTNLRRVTYLVLDEADRMFDKGFEPQIMKVVN 480
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
NIRPD+QTVLFSATFPR +E LARKVL+KPVEI VGG+SVV DITQ + E +FL+
Sbjct: 481 NIRPDKQTVLFSATFPRHMEALARKVLDKPVEILVGGKSVVCSDITQNAVICAEHQKFLK 540
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLS-LHGAKDQTDRESTISDFKS 762
LLELLG +YE+G ++FV QEK D + L++ GY ++ LHG DQ DR+S+I+DFK+
Sbjct: 541 LLELLGMYYEEGSSIVFVDKQEKADDIVDQLMRTGYNSVAPLHGGIDQHDRDSSIADFKT 600
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI-SEE 821
V +L+ATSVAARGLDVK L LV+N+D PNHYEDYVHRVGRTGRAGRKG A TF+ E
Sbjct: 601 GVIKVLVATSVAARGLDVKNLILVVNYDCPNHYEDYVHRVGRTGRAGRKGYAYTFVLPEH 660
Query: 822 DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN-QGLE-QAHGTGYGGSGFKFN 875
K + ++ +A E + P DLKA+ + F +++ +G E + G G+ GSG+K++
Sbjct: 661 QEKMAGEICRAFETAGCKPPADLKAMFERFKSEMAAEGKEVKLGGKGFEGSGYKYD 716
Score = 74 (31.1 bits), Expect = 1.3e-153, Sum P(3) = 1.3e-153
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLED-FTNQALSLPGGAQPGRYSV 975
R+L+L +E +E+++K AK E+ R++++ F L G RY V
Sbjct: 923 RRLHLLLEARSERNLKAAKEEIIRIMKEAFRQLTAQLQRGGTQARYKV 970
Score = 41 (19.5 bits), Expect = 1.3e-153, Sum P(3) = 1.3e-153
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 244 EPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQV 286
E R T DRE D E + +S+T + EE + +V
Sbjct: 48 ERDTDREKTRDREKQRDAEKKKEKESKTAIFEMEESRNDTEEV 90
>UNIPROTKB|A4RN46 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG40CMR1 RefSeq:XP_003713486.1
ProteinModelPortal:A4RN46 EnsemblFungi:MGG_15532T0 GeneID:12987087
KEGG:mgr:MGG_15532 Uniprot:A4RN46
Length = 1012
Score = 1425 (506.7 bits), Expect = 9.3e-152, Sum P(2) = 9.3e-152
Identities = 294/628 (46%), Positives = 400/628 (63%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDI 313
D EDSD + T + + E + +M +++D + A Q+ +E +
Sbjct: 168 DDEDSDGDNFAGTEEEAAAAARAAHERREERILQQSMAMETDEANPAAEGQVNGSEPA-V 226
Query: 314 DPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGR 373
+A + P+ + + + + + +++ D S G K S +
Sbjct: 227 SSANAPEEAQAKPQTDSMDVDTKEDDDEVDPLDAFMADLT--EPSFGPASKPVKTLSSAK 284
Query: 374 IIPGEDS----DSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
++P ++ D ++G M K K +++ +D+SK+D P RK
Sbjct: 285 VLPTPEAYFSDDDEFGASTKEGVDAKA-----IMAMAAKRKKKEIPTIDYSKLDIVPVRK 339
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYE 488
NF++E E++ MT EV+ R +L+ +K+ GKDVPKP++ W GLT I++ I KL Y+
Sbjct: 340 NFWVEPYELSEMTEAEVAELRLELDGIKVSGKDVPKPVQKWSLCGLTRPILDVIAKLEYD 399
Query: 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548
KP IQ QALPVIMSGRD +GVAKTGSGKT+AF+LPM RHIKDQ PV +GP+GLI+ P
Sbjct: 400 KPTAIQMQALPVIMSGRDVVGVAKTGSGKTMAFLLPMFRHIKDQEPVKDNEGPIGLILTP 459
Query: 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
TREL QI D + F K +G+R V YGG + QI++LKRG EIVV T GRMID+L +
Sbjct: 460 TRELAVQIFRDCKPFLKTLGLRAVCAYGGPPIKDQIADLKRGAEIVVATTGRMIDLLAAN 519
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668
G++ +LRR TY+V+DEADRMFDMGFEPQ+ +I N+RPDRQTVLFSAT P+ ++ L +K
Sbjct: 520 QGRVVSLRRTTYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTVLFSATMPKIMDALVKK 579
Query: 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG---KILIFVHSQE 725
VL PVEI+VGG+SVV +ITQ+VE+R E +F RLLELLGE Y+ + LIFV QE
Sbjct: 580 VLKNPVEIEVGGKSVVASEITQIVEIRDEKSKFNRLLELLGELYKDDDDVRSLIFVERQE 639
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785
K D L R+LL+ GY C+SLHG KDQ DR+STISDFKS VC ++IATSVAARGLDVK+L+L
Sbjct: 640 KADELLRELLRKGYGCMSLHGGKDQVDRDSTISDFKSGVCPVMIATSVAARGLDVKQLKL 699
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
V+N+DAPNH EDYVHR GRTGRAG G A+TF++EE + + KALE S Q VP+ L
Sbjct: 700 VVNYDAPNHLEDYVHRAGRTGRAGNTGTAVTFVTEEQENCAIGIAKALEQSGQPVPEKLI 759
Query: 846 ALADSFMAKVNQGLEQAHGTGYGGSGFK 873
+ +F KV G + +G+GG G +
Sbjct: 760 EMRKAFREKVKAGKAKDQ-SGFGGKGLE 786
Score = 77 (32.2 bits), Expect = 9.3e-152, Sum P(2) = 9.3e-152
Identities = 20/47 (42%), Positives = 27/47 (57%)
Query: 930 KLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSLPGGAQP-GRYSV 975
KLY+ IEG TE V A +EL R+L++ T A A GRY++
Sbjct: 965 KLYILIEGDTELVVGNALSELTRLLKEGTMAAADAESRAPASGRYTI 1011
>CGD|CAL0005725 [details] [associations]
symbol:PRP5 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 1162 (414.1 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 251/541 (46%), Positives = 343/541 (63%)
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
R+ + +S+ + +K+ + E + DYG + K TK
Sbjct: 173 RESELKSDNTKAEKAIESIPEGDVENEKENDDYGGDGDEEDESDEESRLQDLISTKLTKL 232
Query: 412 E----KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPI 466
+ +L +DHS+ +YQ FRK FY E E++ ++ E+V R+ L+ +K+ G DVP+PI
Sbjct: 233 QNKGKELQSIDHSQENYQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPI 292
Query: 467 KTWHQTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
W L + + I KL +EKP IQ+QALP I+SGRD IG+AKTGSGKTL++VLPM
Sbjct: 293 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 352
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQI 584
LRHI+DQ GP+GLI++PTREL QI +I F K +R YGGS + QI
Sbjct: 353 LRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQI 412
Query: 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644
+ELK+G EI+V TPGR+ID+L + G++ NL+R T++V+DEADRMFD+GFEPQ+ +I+
Sbjct: 413 NELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ---LVEVRPES-DR 700
IRPDRQTVLFSATFPR++E LA+++L PV I VGG SVV +I Q L E E D+
Sbjct: 473 IRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDK 532
Query: 701 FL-----RLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
+ +L ++L + + KIL+F Q D L +LL + YP +++HG KDQ D
Sbjct: 533 YKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMD 592
Query: 753 RESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810
R+ I +F S + N+LIATS+AARGLDV+ L LVINFD PNH EDYVHRVGRTGRAG
Sbjct: 593 RKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 652
Query: 811 KGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGS 870
KG AITF+S K +LVKAL+LS + L+ +A+ F+ KV G E+ +G+GG
Sbjct: 653 KGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLEEIANKFVTKVKAGKEKI-SSGFGGK 711
Query: 871 G 871
G
Sbjct: 712 G 712
Score = 69 (29.3 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 927 AIRKLYLFIEGPTEQSVKRAKAELKR-VLE--DFTNQALSLPGGAQP-GRYSV 975
++ KLYL +EG T QSV A +K+ +LE D NQ +L QP GRY V
Sbjct: 836 SLAKLYLLVEGLTLQSVTEAITLIKKKMLESLDILNQRENL----QPTGRYVV 884
Score = 46 (21.3 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 309 EDEDIDPLDAFMNSMVLPEVE----KLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPK 364
+ E D LD F+ S+ E++ K + +E S +G+ VE++K D +G++
Sbjct: 158 DKESEDELDVFLASIRESELKSDNTKAEKAIE-SIPEGD-VENEK--ENDDYGGDGDEED 213
Query: 365 KSSNKS 370
+S +S
Sbjct: 214 ESDEES 219
>UNIPROTKB|Q5ADL0 [details] [associations]
symbol:PRP5 "Pre-mRNA-processing ATP-dependent RNA helicase
PRP5" species:237561 "Candida albicans SC5314" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0005725 GO:GO:0005524
GO:GO:0005634 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000029
EMBL:AACQ01000028 KO:K12811 RefSeq:XP_719806.1 RefSeq:XP_719923.1
ProteinModelPortal:Q5ADL0 GeneID:3638447 GeneID:3638635
KEGG:cal:CaO19.14123 KEGG:cal:CaO19.6831 Uniprot:Q5ADL0
Length = 884
Score = 1162 (414.1 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 251/541 (46%), Positives = 343/541 (63%)
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
R+ + +S+ + +K+ + E + DYG + K TK
Sbjct: 173 RESELKSDNTKAEKAIESIPEGDVENEKENDDYGGDGDEEDESDEESRLQDLISTKLTKL 232
Query: 412 E----KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPI 466
+ +L +DHS+ +YQ FRK FY E E++ ++ E+V R+ L+ +K+ G DVP+PI
Sbjct: 233 QNKGKELQSIDHSQENYQEFRKVFYREAYELSALSDEQVELIRQDLDNIKVKGTDVPRPI 292
Query: 467 KTWHQTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
W L + + I KL +EKP IQ+QALP I+SGRD IG+AKTGSGKTL++VLPM
Sbjct: 293 LKWSHLALPTNLSSVIHDKLKFEKPSAIQSQALPTILSGRDVIGIAKTGSGKTLSYVLPM 352
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQI 584
LRHI+DQ GP+GLI++PTREL QI +I F K +R YGGS + QI
Sbjct: 353 LRHIQDQQFSKDNQGPIGLILSPTRELALQIEKEILNFTKRNNNLRVCCCYGGSSIENQI 412
Query: 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644
+ELK+G EI+V TPGR+ID+L + G++ NL+R T++V+DEADRMFD+GFEPQ+ +I+
Sbjct: 413 NELKKGVEIIVGTPGRVIDLLAANSGRVLNLKRCTFVVLDEADRMFDLGFEPQVNKILTQ 472
Query: 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ---LVEVRPES-DR 700
IRPDRQTVLFSATFPR++E LA+++L PV I VGG SVV +I Q L E E D+
Sbjct: 473 IRPDRQTVLFSATFPRKMETLAKQILTDPVVIIVGGISVVAPEIKQEVVLFETSAEEQDK 532
Query: 701 FL-----RLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
+ +L ++L + + KIL+F Q D L +LL + YP +++HG KDQ D
Sbjct: 533 YKQQRVEKLHDILTNYQIEHPDSKILVFTEKQNDADELVANLLSNKYPAIAIHGGKDQMD 592
Query: 753 RESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810
R+ I +F S + N+LIATS+AARGLDV+ L LVINFD PNH EDYVHRVGRTGRAG
Sbjct: 593 RKYAIKEFASMDSGINILIATSIAARGLDVRNLGLVINFDPPNHMEDYVHRVGRTGRAGA 652
Query: 811 KGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGS 870
KG AITF+S K +LVKAL+LS + L+ +A+ F+ KV G E+ +G+GG
Sbjct: 653 KGNAITFVSSSQPKEVFNLVKALKLSHSDIDPKLEEIANKFVTKVKAGKEKI-SSGFGGK 711
Query: 871 G 871
G
Sbjct: 712 G 712
Score = 69 (29.3 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 927 AIRKLYLFIEGPTEQSVKRAKAELKR-VLE--DFTNQALSLPGGAQP-GRYSV 975
++ KLYL +EG T QSV A +K+ +LE D NQ +L QP GRY V
Sbjct: 836 SLAKLYLLVEGLTLQSVTEAITLIKKKMLESLDILNQRENL----QPTGRYVV 884
Score = 46 (21.3 bits), Expect = 1.9e-126, Sum P(3) = 1.9e-126
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 309 EDEDIDPLDAFMNSMVLPEVE----KLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPK 364
+ E D LD F+ S+ E++ K + +E S +G+ VE++K D +G++
Sbjct: 158 DKESEDELDVFLASIRESELKSDNTKAEKAIE-SIPEGD-VENEK--ENDDYGGDGDEED 213
Query: 365 KSSNKS 370
+S +S
Sbjct: 214 ESDEES 219
>GENEDB_PFALCIPARUM|PFE0430w [details] [associations]
symbol:PFE0430w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 1087 (387.7 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 232/577 (40%), Positives = 348/577 (60%)
Query: 309 EDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSN 368
+D+D D D + + VE+LK E D E M+ S ++ K S+
Sbjct: 581 DDDDDDDDDDDVFHKLF--VEELKKKTEE---DMKRNEKDNMNESNLTDSKNKKQNKGSD 635
Query: 369 KSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFR 428
S +D+D MK++ K KL V+H +IDY P +
Sbjct: 636 ASFSS---SDDTDDKLSSNKSELNYEENG-----MKKMNK----KLLEVNHDEIDYIPIK 683
Query: 429 KNFYIEVKEIARMTPEEVSAYRKQL-ELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNY 487
KN Y++VKEI M +V +RK + + GK+ P+P++ ++Q GL SKI++ + K N+
Sbjct: 684 KNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNF 743
Query: 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
+K IQ Q +P +M GRD I +A+TGSGKTL+++ P++RH+ Q P+ DGP+ +I+
Sbjct: 744 KKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGPISIILT 803
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
PTREL Q+ ++ + + K + + + VYGGS +A+Q+ LK+G EI+V TPGR+IDIL
Sbjct: 804 PTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTI 863
Query: 608 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667
S K+TNL RV+++V+DEADR+ D+GFE QI I++N R D+QT + SATFP ++ +A+
Sbjct: 864 SNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMAK 923
Query: 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKC 727
K+L KP+EI VG + N +I Q VE+ ES + RLL+LLGEW + G +LIFV+ Q +
Sbjct: 924 KLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEA 983
Query: 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
D L+ +L K+ Y L LHG +DQTDR+ T+ FK +LIATSV ARG+D+K + LVI
Sbjct: 984 DLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVI 1043
Query: 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE-----LSEQV-VP 841
N+ P+H EDY+HR+GRTGR+ G A TFI + + D+ L+ L++ + +P
Sbjct: 1044 NYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLKNNIYYLNKTIDIP 1103
Query: 842 DDLKALADSFMAKVNQGLEQAHGT----GYGGSGFKF 874
DL+ + + K+N E+ G GY G G+KF
Sbjct: 1104 QDLENMIIEY-TKINSINEKQKGKNKNLGYKGKGYKF 1139
Score = 44 (20.5 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDF 957
++L++ I PT ++ A+ EL +L +F
Sbjct: 1444 KQLHIEILAPTYNQIQIARNELNSLLNNF 1472
Score = 38 (18.4 bits), Expect = 3.9e-117, Sum P(4) = 3.9e-117
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 838 QVVPDDLKALADSFMAKVNQGLEQAHGTGY 867
Q+ ++L +L ++FM N ++A TG+
Sbjct: 1459 QIARNELNSLLNNFMISCNIKAKRA-STGW 1487
Score = 37 (18.1 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 332 KNTVEPSFTDGNN 344
KNT +++D NN
Sbjct: 566 KNTTNNNYSDNNN 578
Score = 37 (18.1 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 243 EEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSEN 284
++ K N+ D E + DE + + + + + SEN
Sbjct: 272 DKKKNYHNYESDEETNKDESNNNNNNNNNNNNNNNKDSSSEN 313
>UNIPROTKB|Q8I416 [details] [associations]
symbol:PFE0430w "ATP-dependent RNA Helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K12811
RefSeq:XP_001351645.1 ProteinModelPortal:Q8I416 IntAct:Q8I416
MINT:MINT-1560531 EnsemblProtists:PFE0430w:mRNA GeneID:812854
KEGG:pfa:PFE0430w EuPathDB:PlasmoDB:PF3D7_0508700
HOGENOM:HOG000284107 ProtClustDB:CLSZ2433224 Uniprot:Q8I416
Length = 1490
Score = 1087 (387.7 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 232/577 (40%), Positives = 348/577 (60%)
Query: 309 EDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSN 368
+D+D D D + + VE+LK E D E M+ S ++ K S+
Sbjct: 581 DDDDDDDDDDDVFHKLF--VEELKKKTEE---DMKRNEKDNMNESNLTDSKNKKQNKGSD 635
Query: 369 KSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFR 428
S +D+D MK++ K KL V+H +IDY P +
Sbjct: 636 ASFSS---SDDTDDKLSSNKSELNYEENG-----MKKMNK----KLLEVNHDEIDYIPIK 683
Query: 429 KNFYIEVKEIARMTPEEVSAYRKQL-ELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNY 487
KN Y++VKEI M +V +RK + + GK+ P+P++ ++Q GL SKI++ + K N+
Sbjct: 684 KNIYVQVKEITNMKDSDVDMFRKNNGNIIVRGKNCPRPVQYFYQCGLPSKILQILEKKNF 743
Query: 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
+K IQ Q +P +M GRD I +A+TGSGKTL+++ P++RH+ Q P+ DGP+ +I+
Sbjct: 744 KKMYNIQMQTIPALMCGRDVIAIAETGSGKTLSYLFPVIRHVLHQEPLRNNDGPISIILT 803
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
PTREL Q+ ++ + + K + + + VYGGS +A+Q+ LK+G EI+V TPGR+IDIL
Sbjct: 804 PTRELSIQVKNEAKIYCKAVNIEILAVYGGSNIARQLKVLKKGVEILVGTPGRIIDILTI 863
Query: 608 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667
S K+TNL RV+++V+DEADR+ D+GFE QI I++N R D+QT + SATFP ++ +A+
Sbjct: 864 SNCKVTNLNRVSFVVLDEADRLLDLGFESQIYNILRNCRKDKQTAMISATFPNYIQNMAK 923
Query: 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKC 727
K+L KP+EI VG + N +I Q VE+ ES + RLL+LLGEW + G +LIFV+ Q +
Sbjct: 924 KLLYKPIEIIVGEKGKTNNNIYQFVEIIEESKKVFRLLKLLGEWIKYGLVLIFVNKQIEA 983
Query: 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
D L+ +L K+ Y L LHG +DQTDR+ T+ FK +LIATSV ARG+D+K + LVI
Sbjct: 984 DLLYLELYKYDYNLLVLHGGQDQTDRQFTLEKFKKEENKVLIATSVMARGIDIKNIILVI 1043
Query: 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE-----LSEQV-VP 841
N+ P+H EDY+HR+GRTGR+ G A TFI + + D+ L+ L++ + +P
Sbjct: 1044 NYQCPDHIEDYIHRIGRTGRSNNIGYAYTFILPNEYTKAYDIYNLLKNNIYYLNKTIDIP 1103
Query: 842 DDLKALADSFMAKVNQGLEQAHGT----GYGGSGFKF 874
DL+ + + K+N E+ G GY G G+KF
Sbjct: 1104 QDLENMIIEY-TKINSINEKQKGKNKNLGYKGKGYKF 1139
Score = 44 (20.5 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 929 RKLYLFIEGPTEQSVKRAKAELKRVLEDF 957
++L++ I PT ++ A+ EL +L +F
Sbjct: 1444 KQLHIEILAPTYNQIQIARNELNSLLNNF 1472
Score = 38 (18.4 bits), Expect = 3.9e-117, Sum P(4) = 3.9e-117
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 838 QVVPDDLKALADSFMAKVNQGLEQAHGTGY 867
Q+ ++L +L ++FM N ++A TG+
Sbjct: 1459 QIARNELNSLLNNFMISCNIKAKRA-STGW 1487
Score = 37 (18.1 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 332 KNTVEPSFTDGNN 344
KNT +++D NN
Sbjct: 566 KNTTNNNYSDNNN 578
Score = 37 (18.1 bits), Expect = 9.1e-118, Sum P(4) = 9.1e-118
Identities = 9/42 (21%), Positives = 18/42 (42%)
Query: 243 EEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSEN 284
++ K N+ D E + DE + + + + + SEN
Sbjct: 272 DKKKNYHNYESDEETNKDESNNNNNNNNNNNNNNNKDSSSEN 313
>TAIR|locus:2065215 [details] [associations]
symbol:AT2G47330 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003723 EMBL:AC002337 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 UniGene:At.12226 UniGene:At.25582
HOGENOM:HOG000268793 KO:K12835 EMBL:AY057700 EMBL:AY124871
IPI:IPI00516775 PIR:H84913 RefSeq:NP_566099.1
ProteinModelPortal:O22907 SMR:O22907 STRING:O22907 PaxDb:O22907
PRIDE:O22907 EnsemblPlants:AT2G47330.1 GeneID:819346
KEGG:ath:AT2G47330 GeneFarm:942 TAIR:At2g47330 InParanoid:O22907
OMA:QEYANLM PhylomeDB:O22907 ProtClustDB:CLSN2688982
Genevestigator:O22907 GermOnline:AT2G47330 Uniprot:O22907
Length = 760
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 260/617 (42%), Positives = 371/617 (60%)
Query: 267 GKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLP 326
G + D D D EN+ + + +GGSAA + G DE IDPLDAFM +
Sbjct: 39 GDNSEDADLDNIDY-MENEEAEEDI--EEGGSAAAS---GGEVDE-IDPLDAFMEGIH-- 89
Query: 327 EVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGR--IIPGEDSDSD- 383
+++K+ P + +E K D D + + KK +L + G +SD +
Sbjct: 90 --QEMKSAPPPKPKE--KLERYK-DDDDDPVESYLKAKKDLGLTLAADALNAGYNSDEEV 144
Query: 384 YGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTP 443
Y V K K E ++ +DHS IDY+P K+FY E++ I+ MT
Sbjct: 145 YAAAKAVDAGMLDYDSDDNPIVVDKRKIEPITALDHSSIDYEPINKDFYEELESISGMTE 204
Query: 444 EEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS 503
+E + YR++L +++ G DV +P+KT+ G +S+IM I+K YEKP IQ QALP+++S
Sbjct: 205 QETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLS 264
Query: 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563
GRD IG+AKTGSGKT AFVLPM+ HI DQP + +GP+G+I APTREL QI + +KF
Sbjct: 265 GRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKF 324
Query: 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623
+K G+R VYGG +Q ELK G EIVV TPGR+ID+L K + R +YLV+
Sbjct: 325 SKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLIDMLKM---KALTMMRASYLVL 381
Query: 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV 683
DEADRMFD+GFEPQ+ IV IRPDRQT+LFSAT P +VE LAR++L+ P+ + VG +
Sbjct: 382 DEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRVTVGEVGM 441
Query: 684 VNKDITQLVEVRP-ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL 742
N+DITQ+V V P ++++ LLE L ++G +L+F + D + L + +
Sbjct: 442 ANEDITQVVNVIPSDAEKLPWLLEKLPGMIDEGDVLVFASKKATVDEIEAQLTLNSFKVA 501
Query: 743 SLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRV 802
+LHG KDQ R T+ FKS V ++LIAT VAARGLD+K L+ V+N+D + +VHR+
Sbjct: 502 ALHGDKDQASRMETLQKFKSGVHHVLIATDVAARGLDIKSLKTVVNYDIAKDMDMHVHRI 561
Query: 803 GRTGRAG-RKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA--DS-FMAKVN-- 856
GRTGRAG R G A T +++ +A+++ +LV +L + Q VP +L LA D F +K +
Sbjct: 562 GRTGRAGDRDGVAYTLVTQREARFAGELVNSLVAAGQNVPPELTDLAMKDGRFKSKRDGR 621
Query: 857 QGLEQAHGTGYGGSGFK 873
+G ++ G G G G +
Sbjct: 622 KGGKKGRGGGGGNKGVR 638
>TAIR|locus:2162022 [details] [associations]
symbol:AT5G63120 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000184 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
EMBL:AB008265 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 EMBL:AY060589
EMBL:BT000610 EMBL:AK226611 EMBL:AJ010476 IPI:IPI00532778
IPI:IPI00537266 PIR:T51349 RefSeq:NP_568964.1 RefSeq:NP_974985.1
UniGene:At.27361 ProteinModelPortal:Q8W4R3 SMR:Q8W4R3 PaxDb:Q8W4R3
PRIDE:Q8W4R3 EnsemblPlants:AT5G63120.2 GeneID:836432
KEGG:ath:AT5G63120 GeneFarm:979 TAIR:At5g63120 InParanoid:Q8W4R3
OMA:FTHANAK PhylomeDB:Q8W4R3 ProtClustDB:CLSN2690069
Genevestigator:Q8W4R3 GermOnline:AT5G63120 Uniprot:Q8W4R3
Length = 591
Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
Identities = 219/447 (48%), Positives = 302/447 (67%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY+E + MT ++V+ YR + ++ + G+DVPKP+K + I+E I KL
Sbjct: 125 FEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPDNILEAIAKLG 184
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
+ +P PIQAQ P+ + GRD IG+A+TGSGKTLA++LP L H+ QP + DGP+ LI+
Sbjct: 185 FTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLIL 244
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL- 605
APTREL QI + RKF GVR +YGG+ QI +L+RG EIV+ TPGR+ID+L
Sbjct: 245 APTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLE 304
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
C TNL+RVTYLV+DEADRM DMGFEPQI +IV IRPDRQT+L+SAT+PR+VE L
Sbjct: 305 CQH----TNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETL 360
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724
AR+ L P + +G + N+ I Q++E+ P +++ RLL LL + + KILIFV ++
Sbjct: 361 ARQFLRDPYKAIIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETK 420
Query: 725 EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784
CD + R L G+P L++HG K Q++R+ +++FKS ++ AT VAARGLDVK+++
Sbjct: 421 RGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGRSPIMTATDVAARGLDVKDIK 480
Query: 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
V+N+D PN EDY+HR+GRTGRAG KG A TF + ++AK++ +LVK L+ + QVVP L
Sbjct: 481 CVVNYDFPNTLEDYIHRIGRTGRAGAKGMAFTFFTHDNAKFARELVKILQEAGQVVPPTL 540
Query: 845 KALADSFMAKVNQGLEQAHGTGYGGSG 871
AL S G+GYGGSG
Sbjct: 541 SALVRS------------SGSGYGGSG 555
>ZFIN|ZDB-GENE-050706-53 [details] [associations]
symbol:ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
42" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050706-53 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
EMBL:BX324157 IPI:IPI00774497 Ensembl:ENSDART00000076209
Uniprot:E7F401
Length = 910
Score = 1044 (372.6 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 212/462 (45%), Positives = 296/462 (64%)
Query: 417 VDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTS 476
+DHS+IDY PF KNFY E +EI+ +T EV R++L LK+ G PKP ++ G
Sbjct: 207 IDHSEIDYSPFEKNFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDE 266
Query: 477 KIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA 536
++M IRK Y +P PIQ Q +P+ +SGRD IG+AKTGSGKT AF+ P+L HI DQ +
Sbjct: 267 QLMHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELE 326
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVC 596
G+GP+ +I+ PTREL QQIH++ ++F K G+R V VYGG + +Q L+ G EIVVC
Sbjct: 327 PGEGPIAVIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVC 386
Query: 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656
TPGR+ID + K T+L+RVT+LV DEADRMFDMGFE Q+ I ++RPDRQT+LFSA
Sbjct: 387 TPGRLIDHVKK---KATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSA 443
Query: 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV-RPESDRFLRLLELLGEWYEKG 715
TF +++E LAR +L P+ + G N+DITQ+VEV + D++ L L E+ G
Sbjct: 444 TFRKKIEKLARDILVDPIRVVQGDIGEANEDITQIVEVLQSGQDKWGWLTRRLVEFTSAG 503
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
+L+FV + C+ L +L++ GY LHG DQ++R I+DFK +L+AT VAA
Sbjct: 504 SVLVFVTKKANCEELATNLIQEGYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAA 563
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RGLD+ + V+N+D + + HR+GRTGRAG KG A T ++ +D ++ DLV+ LE
Sbjct: 564 RGLDIPSIRTVVNYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEG 623
Query: 836 SEQVVPDDLKALADS---FM-AKVNQGLEQAHGTGYGGSGFK 873
+ Q V DL LA F ++ G + G GG G++
Sbjct: 624 ANQSVSKDLLDLAMQNPWFRKSRFKGGKGKKINIGGGGLGYR 665
Score = 61 (26.5 bits), Expect = 8.0e-110, Sum P(2) = 8.0e-110
Identities = 21/61 (34%), Positives = 25/61 (40%)
Query: 260 DEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAF 319
DEE E + AD P+EN GG G ++ ED DPLDAF
Sbjct: 68 DEENAYFEDDEEESTADLPYIPAENSPTRKQFQSGGGGGG------GGSDSED-DPLDAF 120
Query: 320 M 320
M
Sbjct: 121 M 121
>FB|FBgn0036104 [details] [associations]
symbol:CG6418 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE014296 GO:GO:0006200
GO:GO:0003676 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 KO:K12835 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AY061400 RefSeq:NP_648413.1
UniGene:Dm.922 SMR:Q9VTC1 IntAct:Q9VTC1 MINT:MINT-311970
STRING:Q9VTC1 EnsemblMetazoa:FBtr0076274 GeneID:39218
KEGG:dme:Dmel_CG6418 UCSC:CG6418-RB FlyBase:FBgn0036104
InParanoid:Q9VTC1 OrthoDB:EOG4KKWJ0 ChiTaRS:CG6418 GenomeRNAi:39218
NextBio:812543 Uniprot:Q9VTC1
Length = 791
Score = 1082 (385.9 bits), Expect = 1.6e-109, P = 1.6e-109
Identities = 246/614 (40%), Positives = 353/614 (57%)
Query: 268 KSETDMDA-DEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSM--V 324
K TD D D++ +P E ++ A + + G AP ED D D D M +
Sbjct: 85 KHHTDDDYFDDDDEPREKEIEQAY-IPAPGSPGAPPTSAKKQEDSDSDE-DPLEQFMAGI 142
Query: 325 LPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDY 384
+VEK K P +D + D S K++ N L G D + +Y
Sbjct: 143 NQQVEKEKRQQAPK--PPTQAVRGDIDDEDDEESYYRYMKENPNAGLRD--EGSDQEIEY 198
Query: 385 GXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPE 444
+ KK + L + HS+I+Y+PF KNFY + +IA + E
Sbjct: 199 DEDGNP------------IAPPKKKDIDPLPPIYHSEIEYEPFEKNFYTQHDDIAALDDE 246
Query: 445 EVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG 504
+V R+ L +K+ G PKP+ ++ G ++++ +RK Y +P PIQAQA+P +SG
Sbjct: 247 QVRELRRTLGVKVTGPSPPKPVTSFGHFGFDEQLIKAVRKAEYTQPTPIQAQAVPTALSG 306
Query: 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564
RD IG+AKTGSGKT AF+ PML H+ DQ + GDGP+GLI+APTREL QI+++ +KF
Sbjct: 307 RDIIGIAKTGSGKTAAFIWPMLMHVMDQKQLKPGDGPIGLILAPTRELSLQIYNEAKKFG 366
Query: 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
KV + V YGG +Q L++G EI+V TPGRMID++ K TNLRRVT+LV+D
Sbjct: 367 KVYNLNVVCCYGGGSKWEQSKALEQGAEIIVATPGRMIDMVKM---KATNLRRVTFLVLD 423
Query: 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV 684
EADRMF MGFEPQ+ I ++RPDRQ ++FSATF +++E LAR VL+ PV I G +
Sbjct: 424 EADRMFHMGFEPQVRSICNHVRPDRQCLMFSATFKKRIERLARDVLSDPVRIVQGDLNEA 483
Query: 685 NKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLS 743
N+DITQ V V P ++ LL L ++ +G +LIFV + + + +LL Y CL
Sbjct: 484 NQDITQSVYVFPNPLQKWNWLLCHLVKFLSEGSVLIFVTKKVDAETVSNNLLIKEYNCLL 543
Query: 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803
LHG DQ DR I+ FK C++L+AT VAARGLD+ + V+N+D E + HR+G
Sbjct: 544 LHGDMDQADRNKVITQFKRKECDILVATDVAARGLDIPHIRNVVNYDTARDIETHTHRIG 603
Query: 804 RTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA--DSFM--AKVNQGL 859
RTGRAG KG A T ++++D +++ LV+ LE ++Q+VPDDL LA S+ ++ QG
Sbjct: 604 RTGRAGEKGNAYTLVTDKDKEFAGHLVRNLEGADQLVPDDLMELAMKSSWFRSSRFKQGK 663
Query: 860 EQAHGTGYGGSGFK 873
+ + G G++
Sbjct: 664 GKRPTNTHTGLGYR 677
>UNIPROTKB|E1BJD2 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:DAAA02049325 IPI:IPI00701280
Ensembl:ENSBTAT00000028046 Uniprot:E1BJD2
Length = 946
Score = 1030 (367.6 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
Identities = 209/466 (44%), Positives = 296/466 (63%)
Query: 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQ 471
+ L +DHS+IDY PF KNFY E +EI +TP+++ R +L L++ G P+P ++
Sbjct: 198 DPLPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAH 257
Query: 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531
G ++M IRK Y +P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI D
Sbjct: 258 FGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMD 317
Query: 532 QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
Q + GDGP+ +I+ PTREL QQIH++ ++F K +R V VYGG + +Q L+ G
Sbjct: 318 QKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGA 377
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
EIVVCTPGR+ID + K TNL+RV+YLV DEADRMFDMGFE Q+ I ++RPDRQT
Sbjct: 378 EIVVCTPGRLIDHVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQT 434
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW 711
+LFSATF +++E LAR +L P+ + G N+D+TQ+VE+ ++ L L E+
Sbjct: 435 LLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGSKWNWLTRRLVEF 494
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
G +L+FV + + L +L + G+ LHG DQ++R ISDFK +L+AT
Sbjct: 495 TSSGSVLLFVTKKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVAT 554
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831
VAARGLD+ ++ VIN+D + + HR+GRTGRAG KG A T ++ +D+ ++ DLV+
Sbjct: 555 DVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVR 614
Query: 832 ALELSEQVVPDDLKALA--DSFMAK--VNQGLEQAHGTGYGGSGFK 873
LE + Q V +L LA +++ K G + G GG G++
Sbjct: 615 NLEGANQHVSKELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 660
Score = 526 (190.2 bits), Expect = 1.5e-48, P = 1.5e-48
Identities = 114/294 (38%), Positives = 165/294 (56%)
Query: 310 DEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
D D DPL+AFM + +K +E + NV+ + D + + + N
Sbjct: 110 DSDDDPLEAFMAEVEDQAARDMKR-LEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENP 168
Query: 370 SLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
+ G + E+ + +Y K++ + L +DHS+IDY PF K
Sbjct: 169 TAGVVQEEEEDNLEYDSDGNPIAPS---------KKI----IDPLPPIDHSEIDYPPFEK 215
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489
NFY E +EI +TP+++ R +L L++ G P+P ++ G ++M IRK Y +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549
P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+ PT
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPT 335
Query: 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 603
REL QQIH++ ++F K +R V VYGG + +Q L+ G EIVVCTPGR+ID
Sbjct: 336 RELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389
Score = 46 (21.3 bits), Expect = 9.2e-107, Sum P(2) = 9.2e-107
Identities = 22/78 (28%), Positives = 33/78 (42%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDI 313
D E+ DD+E +E + + +N + DSDG AP+ +I I
Sbjct: 150 DIEEEDDQEAYFRYMAENPTAGVVQEEEEDN-----LEYDSDGNPIAPSKKI-------I 197
Query: 314 DPLDAFMNSMV-LPEVEK 330
DPL +S + P EK
Sbjct: 198 DPLPPIDHSEIDYPPFEK 215
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
Identities = 238/620 (38%), Positives = 350/620 (56%)
Query: 256 EDSDDEEVPQTGKSETDMDA-DEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDID 314
ED DD+ ++ M ++ P EN + +++ + + ED++ID
Sbjct: 93 EDDDDDYFFSNVPPKSSMTTLNKSPPNFENASSNNNNNNNNNNQESDSKNQNEDEDDEID 152
Query: 315 PLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKK--MDRKGDRRSNGE-QPKKSSNKSL 371
PLDAFM ++ ++E +++SK+ +D + D + + K+ +NKS
Sbjct: 153 PLDAFMENVNAQAAIDNSKSIEKGQQQQQSLKSKRDDIDNEDDEEIFYKLRQKQLANKSS 212
Query: 372 GRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNF 431
+ +D D DY + K E L +DHSK +Y F K F
Sbjct: 213 KQ---QQDDDVDYSSLDDDDGYFDDEESLKNGQSKGKRIIEPLPPIDHSKEEYIEFNKIF 269
Query: 432 YIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPM 491
Y E +IA +T E+V RK L++++ G D+ P+ ++ G +++ I K + E P
Sbjct: 270 YEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPT 329
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
PIQ QA+P+ +SGRD I +AKTGSGKT F+ P + HI DQP + GDGP+ L +APTRE
Sbjct: 330 PIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTRE 389
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 611
L QI+ + K++K ++ +YGG QQ ELK G EI+V TPGR+ID++ K
Sbjct: 390 LAHQIYLETLKYSKYFKLKTTVLYGGVSKQQQCKELKAGCEIIVATPGRLIDMIKL---K 446
Query: 612 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLN 671
T L RV+YLV+DEAD+MFD GF PQ+ IV ++RPDRQT+LFSATF VE AR +L+
Sbjct: 447 ATKLNRVSYLVLDEADKMFDFGFGPQVLSIVNHVRPDRQTLLFSATFKPNVEEFARTILS 506
Query: 672 KPVEIQVGGRSVVNKDITQLVEV-RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730
P++I +G N DITQ+V+V + +SD++ L L +G +LIFV ++ + L
Sbjct: 507 DPIKISIGMIGSANSDITQIVQVLKSDSDKWNWLTNQLALLLSQGSVLIFVSTKVAVEQL 566
Query: 731 FRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD 790
+L K G+ +LHG K+Q +R TI FK N+LIAT VAARGLD+ ++ V+N+D
Sbjct: 567 SSNLTKFGFQTCTLHGDKNQIERSQTIQTFKEGKINILIATDVAARGLDIPLIKNVVNYD 626
Query: 791 APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850
E + HR+GRTGRAG G A T I+ +D +S DL+K LE + Q VP +L D
Sbjct: 627 TSRDIESHTHRIGRTGRAGNTGVAYTLITPKDIHFSVDLIKNLESASQFVPPEL---ID- 682
Query: 851 FMAKVNQGLEQAHGTGYGGS 870
+A N ++ G G GGS
Sbjct: 683 -VAMNNPHFKRERGGGGGGS 701
>TAIR|locus:2035741 [details] [associations]
symbol:RH20 "RNA helicase 20" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AC073944 EMBL:AY062745 EMBL:AY128786 EMBL:AJ010470
IPI:IPI00528901 PIR:B96593 PIR:T51345 RefSeq:NP_175911.1
UniGene:At.20425 ProteinModelPortal:Q9C718 SMR:Q9C718 PaxDb:Q9C718
PRIDE:Q9C718 ProMEX:Q9C718 EnsemblPlants:AT1G55150.1 GeneID:841958
KEGG:ath:AT1G55150 GeneFarm:937 TAIR:At1g55150 InParanoid:Q9C718
OMA:CANHNIL PhylomeDB:Q9C718 ProtClustDB:CLSN2682455
Genevestigator:Q9C718 GermOnline:AT1G55150 Uniprot:Q9C718
Length = 501
Score = 1040 (371.2 bits), Expect = 4.6e-105, P = 4.6e-105
Identities = 195/426 (45%), Positives = 293/426 (68%)
Query: 426 PFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKL 485
PF KNFY+E +A MT EV YRK E+ + GKD+PKP+K++ G ++E ++K
Sbjct: 58 PFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVLEEVKKA 117
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
+ +P PIQ+Q P+ M GRD IG+A+TGSGKTL+++LP + H+ QP +A GDGP+ L+
Sbjct: 118 GFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLV 177
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QI + KF ++ +YGG Q+ +L++G EIV+ TPGR+ID++
Sbjct: 178 LAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMM 237
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
++ TNLRRVTYLV+DEADRM DMGF+PQI +IV +IRPDRQT+ +SAT+P++VE L
Sbjct: 238 ESNN---TNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQL 294
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724
++K L P ++ +G + N+ I Q+V+V ES ++ +L++LL + + +IL+F+ ++
Sbjct: 295 SKKFLYNPYKVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTK 354
Query: 725 EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784
+ CD + R L G+P LS+HG K Q +R+ +S+F+S ++ AT VAARGLDVK+++
Sbjct: 355 KGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVK 414
Query: 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
VIN+D P EDYVHR+GRTGRAG KG A TF + +A+++ +L L+ + Q V +L
Sbjct: 415 YVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPEL 474
Query: 845 KALADS 850
++ S
Sbjct: 475 ASMGRS 480
>UNIPROTKB|Q5F485 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008104 "protein
localization" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
EMBL:AJ851415 IPI:IPI00576529 RefSeq:NP_001026097.1
UniGene:Gga.5156 ProteinModelPortal:Q5F485 STRING:Q5F485
GeneID:419959 KEGG:gga:419959 CTD:11325 HOGENOM:HOG000268793
HOVERGEN:HBG081425 InParanoid:Q5F485 KO:K12835 OrthoDB:EOG47WNN9
NextBio:20822943 Uniprot:Q5F485
Length = 944
Score = 1038 (370.5 bits), Expect = 7.5e-105, P = 7.5e-105
Identities = 234/616 (37%), Positives = 345/616 (56%)
Query: 267 GKSETDMDADE---EPKPSENQVGDAMLVDSDGGSAAPALQIGAAE-DEDIDPLDAFMNS 322
G + D + E + +N D + ++ +A+ D D DPL+AFM
Sbjct: 63 GSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDDDPLEAFMAE 122
Query: 323 MVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDS 382
+ +K +E + N + + D + + + N + G + E+ +
Sbjct: 123 VEDQAARDMKR-LEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNL 181
Query: 383 DYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMT 442
+Y K++ + L +DHS+I+Y PF KNFY E +EI +T
Sbjct: 182 EYDSDGNPIAPS---------KKI----IDPLPPIDHSEIEYPPFEKNFYDEHEEITSLT 228
Query: 443 PEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM 502
P++V R +L L++ G P+P ++ + G ++M IRK Y +P PIQ Q +PV M
Sbjct: 229 PQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAM 288
Query: 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562
SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+ PTREL QQIHS+ ++
Sbjct: 289 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKR 348
Query: 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622
F K +R V VYGG + +Q L+ G EIVVCTPGR+ID + K TNL+RVTYLV
Sbjct: 349 FGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK---KATNLQRVTYLV 405
Query: 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS 682
DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LAR +L P+ + G
Sbjct: 406 FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIG 465
Query: 683 VVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741
N+D+TQ+VE+ P ++ L L E+ G +L+FV + + L +L + +
Sbjct: 466 EANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNL 525
Query: 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR 801
LHG DQ++R IS+FK +L+AT VAARGLD+ ++ VIN+D + + HR
Sbjct: 526 GLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHR 585
Query: 802 VGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS---FM-AKVNQ 857
+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L LA F ++
Sbjct: 586 IGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKG 645
Query: 858 GLEQAHGTGYGGSGFK 873
G + G GG G++
Sbjct: 646 GKGKKPNIGGGGLGYR 661
>UNIPROTKB|F1NJ40 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0008104 "protein localization" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00576529 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AADN02056764
Ensembl:ENSGALT00000000811 ArrayExpress:F1NJ40 Uniprot:F1NJ40
Length = 946
Score = 1037 (370.1 bits), Expect = 9.5e-105, P = 9.5e-105
Identities = 235/616 (38%), Positives = 345/616 (56%)
Query: 267 GKSETDMDADE---EPKPSENQVGDAMLVDSDGGSAAPALQIGAAE-DEDIDPLDAFMNS 322
G + D + E + +N D + ++ +A+ D D DPL+AFM
Sbjct: 63 GSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDDDPLEAFM-- 120
Query: 323 MVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDS 382
E ++N + + D +E K ++K + + ++ ++ R + E+ +
Sbjct: 121 -----AESVEN--DQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYM-AENPTA 172
Query: 383 DYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMT 442
G K + L +DHS+I+Y PF KNFY E +EI +T
Sbjct: 173 --GVVQEEEEDNLEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLT 230
Query: 443 PEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM 502
P++V R +L L++ G P+P ++ G ++M IRK Y +P PIQ Q +PV M
Sbjct: 231 PQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAM 290
Query: 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562
SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+ PTREL QQIHS+ ++
Sbjct: 291 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKR 350
Query: 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622
F K +R V VYGG + +Q L+ G EIVVCTPGR+ID + K TNL+RVTYLV
Sbjct: 351 FGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK---KATNLQRVTYLV 407
Query: 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS 682
DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LAR +L P+ + G
Sbjct: 408 FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIG 467
Query: 683 VVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741
N+D+TQ+VE+ P ++ L L E+ G +L+FV + + L +L + +
Sbjct: 468 EANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNL 527
Query: 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR 801
LHG DQ++R IS+FK +L+AT VAARGLD+ ++ VIN+D + + HR
Sbjct: 528 GLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHR 587
Query: 802 VGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS---FM-AKVNQ 857
+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L LA F ++
Sbjct: 588 IGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKG 647
Query: 858 GLEQAHGTGYGGSGFK 873
G + G GG G++
Sbjct: 648 GKGKKLNIGGGGLGYR 663
>UNIPROTKB|F1P0H1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00610000086076 EMBL:AADN02056764
IPI:IPI00819332 Ensembl:ENSGALT00000040437 ArrayExpress:F1P0H1
Uniprot:F1P0H1
Length = 703
Score = 1036 (369.7 bits), Expect = 1.2e-104, P = 1.2e-104
Identities = 234/616 (37%), Positives = 344/616 (55%)
Query: 267 GKSETDMDADE---EPKPSENQVGDAMLVDSDGGSAAPALQIGAAE-DEDIDPLDAFMNS 322
G + D + E + +N D + ++ +A+ D D DPL+AFM
Sbjct: 58 GSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFNSKSADSDSDDDPLEAFMAE 117
Query: 323 MVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDS 382
+ +K +E + N + + D + + + N + G + E+ +
Sbjct: 118 VEDQAARDMKR-LEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDNL 176
Query: 383 DYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMT 442
+Y K++ + L +DHS+I+Y PF KNFY E +EI +T
Sbjct: 177 EYDSDGNPIAPS---------KKI----IDPLPPIDHSEIEYPPFEKNFYDEHEEITSLT 223
Query: 443 PEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM 502
P++V R +L L++ G P+P ++ G ++M IRK Y +P PIQ Q +PV M
Sbjct: 224 PQQVVELRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAM 283
Query: 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562
SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+ PTREL QQIHS+ ++
Sbjct: 284 SGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKR 343
Query: 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622
F K +R V VYGG + +Q L+ G EIVVCTPGR+ID + K TNL+RVTYLV
Sbjct: 344 FGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK---KATNLQRVTYLV 400
Query: 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS 682
DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LAR +L P+ + G
Sbjct: 401 FDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIG 460
Query: 683 VVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741
N+D+TQ+VE+ P ++ L L E+ G +L+FV + + L +L + +
Sbjct: 461 EANEDVTQIVEIFPSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNL 520
Query: 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR 801
LHG DQ++R IS+FK +L+AT VAARGLD+ ++ VIN+D + + HR
Sbjct: 521 GLLHGDMDQSERNKVISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHR 580
Query: 802 VGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS---FM-AKVNQ 857
+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L LA F ++
Sbjct: 581 IGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKG 640
Query: 858 GLEQAHGTGYGGSGFK 873
G + G GG G++
Sbjct: 641 GKGKKLNIGGGGLGYR 656
>UNIPROTKB|E2RFF1 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:AAEX03006359
Ensembl:ENSCAFT00000020366 Uniprot:E2RFF1
Length = 933
Score = 1033 (368.7 bits), Expect = 2.5e-104, P = 2.5e-104
Identities = 228/572 (39%), Positives = 332/572 (58%)
Query: 307 AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKS 366
A D D DPL+AFM + +K +E + NV+ + D + + +
Sbjct: 107 ADSDSDDDPLEAFMAEVEDQAARDMKR-LEEKDKERKNVKGIRDDIEEEDDQEAYFRYMA 165
Query: 367 SNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQP 426
N + G + E+ + +Y K++ + L +DHS+IDY P
Sbjct: 166 ENPTAGVVQEEEEDNLEYDSDGNPIAPS---------KKI----IDPLPPIDHSEIDYPP 212
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY E +EI +TP+++ R +L L++ G P+P ++ G ++M IRK
Sbjct: 213 FEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSE 272
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
Y +P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
PTREL QQIH++ ++F K +R V VYGG + +Q L+ G EIVVCTPGR+ID +
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
K TNL+RV+YLV DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LA
Sbjct: 393 K---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQE 725
R +L P+ + G N+D+TQ+VE+ ++ L L E+ G +L+FV +
Sbjct: 450 RDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785
+ L +L + G+ LHG DQ++R ISDFK +L+AT VAARGLD+ ++
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
VIN+D + + HR+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 846 ALA--DSFMAK--VNQGLEQAHGTGYGGSGFK 873
LA +++ K G + G GG G++
Sbjct: 630 DLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
>MGI|MGI:1919297 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1919297
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0016607 GO:GO:0003723 GO:GO:0015030 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AL604045 HSSP:P09052
CTD:11325 HOGENOM:HOG000268793 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 OMA:QGVNNTA ChiTaRS:DDX42 EMBL:AK007805
EMBL:AK049311 EMBL:AK169816 EMBL:AK171730 EMBL:BC043036
IPI:IPI00329839 IPI:IPI00830514 RefSeq:NP_082350.3 UniGene:Mm.41367
ProteinModelPortal:Q810A7 SMR:Q810A7 IntAct:Q810A7 STRING:Q810A7
PhosphoSite:Q810A7 PaxDb:Q810A7 PRIDE:Q810A7
Ensembl:ENSMUST00000021046 GeneID:72047 KEGG:mmu:72047
UCSC:uc007lyk.2 UCSC:uc007lyl.2 GeneTree:ENSGT00610000086076
InParanoid:Q810A7 NextBio:335308 Bgee:Q810A7 CleanEx:MM_DDX42
Genevestigator:Q810A7 Uniprot:Q810A7
Length = 929
Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
Identities = 228/572 (39%), Positives = 332/572 (58%)
Query: 307 AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKS 366
A D D DPL+AFM + +K +E + NV+ + D + + +
Sbjct: 107 ADSDSDDDPLEAFMAEVEDQAARDMKR-LEEKDKERKNVKGIRDDIEEEDDQEAYFRYMA 165
Query: 367 SNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQP 426
N + G + E+ + +Y K++ + L +DHS+IDY P
Sbjct: 166 ENPTAGVVQEEEEDNLEYDSDGNPIAPS---------KKI----IDPLPPIDHSEIDYPP 212
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY E +EI +TP+++ R +L L++ G P+P ++ G ++M IRK
Sbjct: 213 FEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSE 272
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
Y +P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
PTREL QQIH++ ++F K +R V VYGG + +Q L+ G EIVVCTPGR+ID +
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
K TNL+RV+YLV DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LA
Sbjct: 393 K---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQE 725
R +L P+ + G N+D+TQ+VE+ ++ L L E+ G +L+FV +
Sbjct: 450 RDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785
+ L +L + G+ LHG DQ++R ISDFK +L+AT VAARGLD+ ++
Sbjct: 510 NAEELASNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKT 569
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
VIN+D + + HR+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 846 ALA--DSFMAK--VNQGLEQAHGTGYGGSGFK 873
LA +++ K G + G GG G++
Sbjct: 630 DLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
>UNIPROTKB|Q86XP3 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0015030 "Cajal body"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008104 "protein
localization" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AF083255 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
EMBL:CH471109 GO:GO:0015030 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 CTD:11325 HOVERGEN:HBG081425 KO:K12835
OrthoDB:EOG47WNN9 EMBL:AB036090 EMBL:AK292908 EMBL:AC015651
EMBL:BC008208 EMBL:BC015505 EMBL:BC078667 EMBL:BC093081
EMBL:AL050096 EMBL:BK000566 IPI:IPI00409671 IPI:IPI00829889
PIR:T08745 RefSeq:NP_031398.2 RefSeq:NP_987095.1 UniGene:Hs.702010
ProteinModelPortal:Q86XP3 SMR:Q86XP3 IntAct:Q86XP3
MINT:MINT-1427725 STRING:Q86XP3 PhosphoSite:Q86XP3 DMDM:74750541
PaxDb:Q86XP3 PRIDE:Q86XP3 Ensembl:ENST00000359353
Ensembl:ENST00000389924 Ensembl:ENST00000457800
Ensembl:ENST00000578681 Ensembl:ENST00000583590 GeneID:11325
KEGG:hsa:11325 UCSC:uc002jbu.3 GeneCards:GC17P061851
HGNC:HGNC:18676 HPA:HPA023447 HPA:HPA023571 HPA:HPA025941
MIM:613369 neXtProt:NX_Q86XP3 PharmGKB:PA134875761
InParanoid:Q86XP3 OMA:QGVNNTA ChiTaRS:DDX42 GenomeRNAi:11325
NextBio:43019 ArrayExpress:Q86XP3 Bgee:Q86XP3 CleanEx:HS_DDX42
Genevestigator:Q86XP3 Uniprot:Q86XP3
Length = 938
Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
Identities = 227/569 (39%), Positives = 331/569 (58%)
Query: 310 DEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
D D DPL+AFM + +K +E + NV+ + D + + + N
Sbjct: 110 DSDDDPLEAFMAEVEDQAARDMKR-LEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENP 168
Query: 370 SLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
+ G + E+ + +Y K++ + L +DHS+IDY PF K
Sbjct: 169 TAGVVQEEEEDNLEYDSDGNPIAPT---------KKI----IDPLPPIDHSEIDYPPFEK 215
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489
NFY E +EI +TP+++ R +L L++ G P+P ++ G ++M IRK Y +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549
P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+ PT
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPT 335
Query: 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609
REL QQIH++ ++F K +R V VYGG + +Q L+ G EIVVCTPGR+ID +
Sbjct: 336 RELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-- 393
Query: 610 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669
K TNL+RV+YLV DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LAR +
Sbjct: 394 -KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 670 LNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQEKCD 728
L P+ + G N+D+TQ+VE+ ++ L L E+ G +L+FV + +
Sbjct: 453 LIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAE 512
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
L +L + G+ LHG DQ++R ISDFK +L+AT VAARGLD+ ++ VIN
Sbjct: 513 ELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
+D + + HR+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L LA
Sbjct: 573 YDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLA 632
Query: 849 --DSFMAK--VNQGLEQAHGTGYGGSGFK 873
+++ K G + G GG G++
Sbjct: 633 MQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
>RGD|1304909 [details] [associations]
symbol:Ddx42 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 42"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008104 "protein localization" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1304909
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008104
GO:GO:0003676 EMBL:CH473948 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
CTD:11325 KO:K12835 OrthoDB:EOG47WNN9 GeneTree:ENSGT00610000086076
IPI:IPI00361283 RefSeq:NP_001100529.1 UniGene:Rn.154550
Ensembl:ENSRNOT00000013046 GeneID:303607 KEGG:rno:303607
UCSC:RGD:1304909 NextBio:651732 Uniprot:D4A031
Length = 929
Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
Identities = 227/572 (39%), Positives = 331/572 (57%)
Query: 307 AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKS 366
A D D DPL+AFM + +K +E + NV+ + D + + +
Sbjct: 107 ADSDSDDDPLEAFMAEVEDQAARDMKR-LEEKDKERKNVKGIRDDIEEEDDQEAYFRYMA 165
Query: 367 SNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQP 426
N + G + E+ + +Y K++ + L +DHS+IDY P
Sbjct: 166 ENPTAGVVQEEEEDNLEYDSDGNPIAPS---------KKI----IDPLPPIDHSEIDYPP 212
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY E +EI +TP+++ R +L L++ G P+P ++ G ++M IRK
Sbjct: 213 FEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSE 272
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
Y +P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+
Sbjct: 273 YTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIV 332
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
PTREL QQIH++ ++F K +R V VYGG + +Q L+ G EIVVCTPGR+ID +
Sbjct: 333 CPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVK 392
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
K TNL+RV+YLV DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LA
Sbjct: 393 K---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLA 449
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQE 725
R +L P+ + G N+D+TQ+VE+ ++ L L E+ G +L+FV +
Sbjct: 450 RDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKA 509
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785
+ L +L + G+ LHG DQ++R I DFK +L+AT VAARGLD+ ++
Sbjct: 510 NAEELANNLKQEGHNLGLLHGDMDQSERNKVILDFKKKDIPVLVATDVAARGLDIPSIKT 569
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
VIN+D + + HR+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L
Sbjct: 570 VINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELL 629
Query: 846 ALA--DSFMAK--VNQGLEQAHGTGYGGSGFK 873
LA +++ K G + G GG G++
Sbjct: 630 DLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
>UNIPROTKB|Q5R7D1 [details] [associations]
symbol:DDX42 "ATP-dependent RNA helicase DDX42"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0008104 "protein
localization" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0008104 GO:GO:0016607 GO:GO:0003723
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
CTD:11325 HOVERGEN:HBG081425 KO:K12835 EMBL:CR860187
RefSeq:NP_001126368.1 UniGene:Pab.3212 ProteinModelPortal:Q5R7D1
GeneID:100173349 KEGG:pon:100173349 Uniprot:Q5R7D1
Length = 942
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 227/569 (39%), Positives = 331/569 (58%)
Query: 310 DEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
D D DPL+AFM + +K +E + NV+ + D + + + N
Sbjct: 110 DSDDDPLEAFMAEVEDQAARDMKR-LEEKDKERKNVKGIRDDIEEEDDQETYFRYMAENP 168
Query: 370 SLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
+ G + E+ + +Y K++ + L +DHS+IDY PF K
Sbjct: 169 TAGVVQEEEEDNLEYDSDGNPIAPT---------KKI----IDPLPPIDHSEIDYPPFEK 215
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489
NFY E +EI +TP+++ R +L L++ G P+P ++ G ++M IRK Y +
Sbjct: 216 NFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQ 275
Query: 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549
P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+ +I+ PT
Sbjct: 276 PTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPT 335
Query: 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609
REL QQIH++ ++F K +R V VYGG + +Q L+ G EIVVCTPGR+ID +
Sbjct: 336 RELCQQIHAEGKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKK-- 393
Query: 610 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669
K TNL+RV+YLV DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E LAR +
Sbjct: 394 -KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDI 452
Query: 670 LNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVHSQEKCD 728
L P+ + G N+D+TQ+VE+ ++ L L E+ G +L+FV + +
Sbjct: 453 LIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVTKKANAE 512
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
L +L + G+ LHG DQ++R ISDFK +L+AT VAARGLD+ ++ VIN
Sbjct: 513 ELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPSIKTVIN 572
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
+D + + HR+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V +L LA
Sbjct: 573 YDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSKELLDLA 632
Query: 849 --DSFMAK--VNQGLEQAHGTGYGGSGFK 873
+++ K G + G GG G++
Sbjct: 633 MQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
>ASPGD|ASPL0000006660 [details] [associations]
symbol:AN5931 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 EMBL:BN001301
EMBL:AACD01000101 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_663535.1
ProteinModelPortal:Q5B0J9 STRING:Q5B0J9 PRIDE:Q5B0J9
EnsemblFungi:CADANIAT00007099 GeneID:2870997 KEGG:ani:AN5931.2
OMA:IDAMSGY OrthoDB:EOG47SWP6 Uniprot:Q5B0J9
Length = 563
Score = 999 (356.7 bits), Expect = 1.0e-100, P = 1.0e-100
Identities = 208/457 (45%), Positives = 300/457 (65%)
Query: 422 IDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIME 480
+D P F K+FY E ++ + EV +RK+ E+ + G+DVP+P++T+ + G ++
Sbjct: 94 LDTLPKFEKSFYKEHPDVTARSQREVDEFRKKCEMTVQGRDVPRPVETFDEAGFPQYVLS 153
Query: 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540
++ +EKP IQ+Q P+ +SGRD +G+A+TGSGKTL++ LP + HI QP +A GDG
Sbjct: 154 EVKAQGFEKPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDG 213
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600
P+ LI+APTREL QI ++I KF K +R VYGG QI +L RG E+ + TPGR
Sbjct: 214 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 273
Query: 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660
+ID+L G+ TNLRRVTYLV+DEADRM DMGFEPQI +I+ IRPDRQT ++SAT+P+
Sbjct: 274 LIDML--EAGR-TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPK 330
Query: 661 QVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPE---SDRFLRLLELLGEWYEKG- 715
+V LA LN +++ +G + N ITQ+VEV E DR ++ LE + E +G
Sbjct: 331 EVRQLASDFLNNYIQVNIGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIME--NRGN 388
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
K L+F ++ D + R L + G+P LS+HG K Q +R+ +++FK+ +++AT VA+
Sbjct: 389 KCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGKSPIMVATDVAS 448
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL-E 834
RG+DV+++ VIN+D PN+ EDYVHR+GRTGRAG KG AITF + ++AK + DLV L E
Sbjct: 449 RGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITFFTTDNAKQARDLVTILSE 508
Query: 835 LSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSG 871
+Q+ P LA+ M + + G HG GYG G
Sbjct: 509 AKQQIDP----RLAE--MVRYSGG--GGHGGGYGRWG 537
>CGD|CAL0003204 [details] [associations]
symbol:DBP2 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0003204 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AACQ01000245
EMBL:AACQ01000246 RefSeq:XP_710694.1 RefSeq:XP_710708.1
ProteinModelPortal:Q59LU0 PRIDE:Q59LU0 GeneID:3647692
GeneID:3647705 KEGG:cal:CaO19.171 KEGG:cal:CaO19.7804 KO:K12823
Uniprot:Q59LU0
Length = 562
Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
Identities = 201/450 (44%), Positives = 288/450 (64%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY E ++A + ++ +RK+ E+ + G D+P PI T+ + G +++ ++
Sbjct: 87 FEKNFYSEHPDVAARSDRDIEQFRKENEMTVKGHDIPHPITTFDEAGFPDYVLQEVKDQG 146
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
+ KP PIQ Q P+ +SGRD IG+A TGSGKTL++ LP + HI QP + GDGP+ L++
Sbjct: 147 FPKPTPIQCQGWPMALSGRDMIGIAATGSGKTLSYCLPSIVHINAQPQLQYGDGPIVLVL 206
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
APTREL QI ++ KF K +R VYGG+ QI +L RG EI + TPGR+ID+L
Sbjct: 207 APTRELAVQIQTECSKFGKSSRIRNTCVYGGAPKGPQIRDLARGVEICIATPGRLIDML- 265
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
GK TNL+RVTYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V+ L
Sbjct: 266 -EAGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLT 323
Query: 667 RKVLNKPVEIQVGGRSVV-NKDITQLVEVRPE---SDRFLRLLE-LLGEWYEKGKILIFV 721
R LN P+++ +G + + ITQLVEV E DR ++ LE L E + KIL+F
Sbjct: 324 RDYLNDPIQVTIGSLELAASHTITQLVEVIDEFSKRDRLVKHLESALNE--KDNKILVFA 381
Query: 722 HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781
++ CD + L G+P L++HG K+Q +R+ + +F+ ++++AT VAARG+DVK
Sbjct: 382 STKRTCDEITTYLRSDGWPALAIHGDKEQNERDWVLDEFRKGKTSIMVATDVAARGIDVK 441
Query: 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841
+ VIN+D P + EDYVHR+GRTGR G G AI+F +E ++K DL K + + Q VP
Sbjct: 442 GITHVINYDMPGNIEDYVHRIGRTGRGGASGTAISFFTEGNSKLGGDLCKIMREANQTVP 501
Query: 842 DDLKALADSFMAKVNQGLEQAHGTGYGGSG 871
+L+ D + + G G G GG G
Sbjct: 502 PELQRF-D----RRSYGSHMRFGQGRGGRG 526
>UNIPROTKB|E1C2R8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0072358 "cardiovascular system
development" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
OMA:QQFPQPP EMBL:AADN02006148 EMBL:AADN02006147 IPI:IPI00594176
Ensembl:ENSGALT00000020002 Uniprot:E1C2R8
Length = 496
Score = 990 (353.6 bits), Expect = 9.1e-100, P = 9.1e-100
Identities = 197/427 (46%), Positives = 283/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD-VPKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ I G + PKP+ +HQ +M+ +
Sbjct: 49 FEKNFYVEHPEVARLTPYEVEELRRKKEITIRGMEGCPKPVFAFHQCSFPQYVMDALMDQ 108
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
N+ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 109 NFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 168
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 169 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 228
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 229 --EAGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 285
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L V+I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 286 AEDFLQDYVQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 345
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 346 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 405
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 406 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 465
Query: 843 DLKALAD 849
L L D
Sbjct: 466 KLMQLVD 472
>ZFIN|ZDB-GENE-030131-925 [details] [associations]
symbol:ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
5" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-925 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:BX085195 IPI:IPI00488168 Ensembl:ENSDART00000055492
ArrayExpress:F1Q5L6 Bgee:F1Q5L6 Uniprot:F1Q5L6
Length = 617
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 196/437 (44%), Positives = 289/437 (66%)
Query: 419 HSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSK 477
H +D P F KNFY E ++AR + +EV YR+ E+ + G+D PKPI +H+
Sbjct: 47 HWNLDELPKFEKNFYQENPDVARRSAQEVEHYRRSKEITVKGRDGPKPIVKFHEANFPKY 106
Query: 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA 537
+M+ I K N+ P PIQAQ PV +SG+D +G+A+TGSGKTL+++LP + HI QP +
Sbjct: 107 VMDVITKQNWTDPTPIQAQGWPVALSGKDMVGIAQTGSGKTLSYLLPAIVHINHQPFLEH 166
Query: 538 GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCT 597
GDGP+ L++APTREL QQ+ ++ K ++ +YGG+ QI +L+RG EI + T
Sbjct: 167 GDGPICLVLAPTRELAQQVQQVAAEYGKASRIKSTCIYGGAPKGPQIRDLERGVEICIAT 226
Query: 598 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657
PGR+ID L GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT
Sbjct: 227 PGRLIDFL--EAGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 283
Query: 658 FPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEV---RPESDRFLRLLE-LLGEWY 712
+P++V LA L + ++I VG + N +I Q+V+V + D+ +RLLE ++ E
Sbjct: 284 WPKEVRQLAEDFLKEYIQINVGALQLSANHNILQIVDVCNDGEKEDKLIRLLEEIMSE-- 341
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
++ K +IFV ++ +CD L R + + G+P + +HG K+Q +R+ +++FK +LIAT
Sbjct: 342 KENKTIIFVETKRRCDDLTRRMRRDGWPAMGIHGDKNQQERDWVLNEFKYGKAPILIATD 401
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832
VA+RGLDV++++ VINFD PN+ EDY+HR+GRT R+ + G A TF + + K + DLV
Sbjct: 402 VASRGLDVEDVKFVINFDYPNNSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQAHDLVSV 461
Query: 833 LELSEQVVPDDLKALAD 849
L + Q + L +A+
Sbjct: 462 LREANQAINPKLIQMAE 478
>POMBASE|SPBP8B7.16c [details] [associations]
symbol:dbp2 "ATP-dependent RNA helicase Dbp2"
species:4896 "Schizosaccharomyces pombe" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBP8B7.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005730 GO:GO:0000184
EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY OrthoDB:EOG47SWP6
EMBL:X52648 EMBL:L11574 PIR:T40810 RefSeq:NP_596523.1
ProteinModelPortal:P24782 IntAct:P24782 STRING:P24782 PRIDE:P24782
EnsemblFungi:SPBP8B7.16c.1 GeneID:2541383 KEGG:spo:SPBP8B7.16c
NextBio:20802492 Uniprot:P24782
Length = 550
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 200/451 (44%), Positives = 297/451 (65%)
Query: 426 PFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKL 485
PF+K+FY E + + + EV+ YRK+ E+ +HG +VPKP+ T+ + G + +++ +++L
Sbjct: 81 PFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQL 140
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
+E P PIQ QA P+ MSGRD +G++ TGSGKTL++ LP + HI QP ++ GDGP+ L+
Sbjct: 141 GFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLV 200
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QI + KF K +R VYGG QI +L RG EI + TPGR++D+L
Sbjct: 201 LAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDML 260
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
K TNLRRVTYLV+DEADRM DMGFEPQI +IV IRPDRQTV+FSAT+P++V+ L
Sbjct: 261 --DSNK-TNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRL 317
Query: 666 ARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEWYEK--GKILIFVH 722
AR LN +++ VG + + +I Q+VEV +D+ RL + + E + K+LIF
Sbjct: 318 ARDYLNDYIQVTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTG 377
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ D + R L + G+P L++HG K Q +R+ +++F++ +++AT VA+RG+DVK
Sbjct: 378 TKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKG 437
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
+ V N+D P + EDYVHR+GRTGRAG KG A T+ + ++AK + +LV L ++Q +
Sbjct: 438 ITHVFNYDFPGNTEDYVHRIGRTGRAGAKGTAYTYFTSDNAKQARELVSILSEAKQDIDP 497
Query: 843 DLKALADSFMAKVNQGLEQAHGTGYGGSGFK 873
L+ +A + +G G GYG GF+
Sbjct: 498 KLEEMAR--YSSGGRGGNYRRG-GYGRGGFR 525
>UNIPROTKB|A7E307 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
CTD:10521 HOVERGEN:HBG015893 KO:K13178 OrthoDB:EOG4QRH3N
GO:GO:0072358 EMBL:DAAA02014661 EMBL:DAAA02014662 EMBL:BC151648
IPI:IPI00914517 RefSeq:NP_001095463.1 UniGene:Bt.91623
Ensembl:ENSBTAT00000037682 GeneID:514323 KEGG:bta:514323
InParanoid:A7E307 OMA:QQFPQPP NextBio:20871275 Uniprot:A7E307
Length = 650
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/427 (45%), Positives = 282/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 51 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 110
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 170
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 171 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 231 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 287
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 288 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 408 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 467
Query: 843 DLKALAD 849
L L D
Sbjct: 468 KLMQLVD 474
>UNIPROTKB|E2RJ60 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AAEX03007314
Ensembl:ENSCAFT00000037931 Uniprot:E2RJ60
Length = 650
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/427 (45%), Positives = 282/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 51 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 110
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 170
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 171 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 231 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 287
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 288 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 408 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 467
Query: 843 DLKALAD 849
L L D
Sbjct: 468 KLMQLVD 474
>UNIPROTKB|F1PID8 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:QQFPQPP EMBL:AAEX03007314
Ensembl:ENSCAFT00000002162 Uniprot:F1PID8
Length = 736
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/427 (45%), Positives = 282/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 132 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 191
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 192 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 251
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 252 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 311
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 312 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 368
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 369 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 428
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 429 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 488
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 489 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 548
Query: 843 DLKALAD 849
L L D
Sbjct: 549 KLMQLVD 555
>UNIPROTKB|H3BLZ8 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IEA] [GO:0072358
"cardiovascular system development" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0009791
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:Z97056 HGNC:HGNC:2740
ChiTaRS:DDX17 GO:GO:0072358 ProteinModelPortal:H3BLZ8 SMR:H3BLZ8
Ensembl:ENST00000396821 Bgee:H3BLZ8 Uniprot:H3BLZ8
Length = 731
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/427 (45%), Positives = 282/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 130 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 189
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 190 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 249
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 250 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 309
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 310 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 366
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 367 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 426
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 427 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 486
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 487 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 546
Query: 843 DLKALAD 849
L L D
Sbjct: 547 KLMQLVD 553
>UNIPROTKB|Q92841 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0033148 "positive
regulation of intracellular estrogen receptor signaling pathway"
evidence=IDA] [GO:0030331 "estrogen receptor binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0003724 "RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0008186 "RNA-dependent ATPase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005730
EMBL:CH471095 GO:GO:0045944 GO:GO:0006351 GO:GO:0003723
GO:GO:0006396 GO:GO:0003713 GO:GO:0033148 GO:GO:0030331
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 GO:GO:0008186 EMBL:U59321 EMBL:CR456432
EMBL:AL713763 EMBL:Z97056 EMBL:BC000595 IPI:IPI00651653
IPI:IPI00651677 IPI:IPI00889541 IPI:IPI01022339 PIR:S72367
RefSeq:NP_006377.2 UniGene:Hs.706116 UniGene:Hs.725500
ProteinModelPortal:Q92841 SMR:Q92841 DIP:DIP-29843N IntAct:Q92841
MINT:MINT-4545892 STRING:Q92841 PhosphoSite:Q92841 DMDM:3122595
REPRODUCTION-2DPAGE:IPI00023785 PaxDb:Q92841 PRIDE:Q92841
DNASU:10521 Ensembl:ENST00000403230 GeneID:10521 KEGG:hsa:10521
UCSC:uc003avx.4 CTD:10521 GeneCards:GC22M038879 HGNC:HGNC:2740
HPA:CAB024908 MIM:608469 neXtProt:NX_Q92841 PharmGKB:PA27206
HOVERGEN:HBG015893 InParanoid:Q92841 KO:K13178 ChiTaRS:DDX17
GenomeRNAi:10521 NextBio:39902 ArrayExpress:Q92841 Bgee:Q92841
CleanEx:HS_DDX17 Genevestigator:Q92841 GermOnline:ENSG00000100201
GO:GO:2001014 Uniprot:Q92841
Length = 729
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/427 (45%), Positives = 282/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 130 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 189
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 190 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 249
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 250 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 309
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 310 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 366
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 367 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 426
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 427 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 486
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 487 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 546
Query: 843 DLKALAD 849
L L D
Sbjct: 547 KLMQLVD 553
>UNIPROTKB|F1SKQ0 [details] [associations]
symbol:DDX17 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072358 "cardiovascular system development"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 OMA:QQFPQPP
EMBL:FP102457 Ensembl:ENSSSCT00000000110 Uniprot:F1SKQ0
Length = 736
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/427 (45%), Positives = 282/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 132 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 191
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 192 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 251
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 252 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 311
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 312 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 368
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 369 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 428
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 429 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 488
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 489 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 548
Query: 843 DLKALAD 849
L L D
Sbjct: 549 KLMQLVD 555
>MGI|MGI:1914290 [details] [associations]
symbol:Ddx17 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 17"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030331 "estrogen receptor binding"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0072358 "cardiovascular system
development" evidence=IMP] [GO:2001014 "regulation of skeletal
muscle cell differentiation" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1914290
GO:GO:0005524 GO:GO:0005634 GO:GO:0005730 GO:GO:0045944
GO:GO:0006351 GO:GO:0003723 GO:GO:0003713 GO:GO:0009791
GO:GO:0033148 GO:GO:0030331 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10521 HOVERGEN:HBG015893 KO:K13178
ChiTaRS:DDX17 GO:GO:2001014 EMBL:AK039888 EMBL:BC062910
EMBL:BC096036 IPI:IPI00396797 IPI:IPI00405364 RefSeq:NP_001035277.1
RefSeq:NP_951061.1 RefSeq:NP_951062.1 UniGene:Mm.29644
UniGene:Mm.298199 ProteinModelPortal:Q501J6 SMR:Q501J6
IntAct:Q501J6 STRING:Q501J6 PhosphoSite:Q501J6
REPRODUCTION-2DPAGE:IPI00405364 PaxDb:Q501J6 PRIDE:Q501J6
GeneID:67040 KEGG:mmu:67040 UCSC:uc007wtq.1 UCSC:uc007wtt.1
InParanoid:Q501J6 OrthoDB:EOG4QRH3N NextBio:323386 Bgee:Q501J6
CleanEx:MM_DDX17 Genevestigator:Q501J6
GermOnline:ENSMUSG00000055065 GO:GO:0072358 Uniprot:Q501J6
Length = 650
Score = 984 (351.4 bits), Expect = 3.9e-99, P = 3.9e-99
Identities = 195/427 (45%), Positives = 282/427 (66%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 51 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 110
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 170
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 171 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 231 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 287
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 288 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV++
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDVED 407
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 408 VKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAINP 467
Query: 843 DLKALAD 849
L L D
Sbjct: 468 KLMQLVD 474
>SGD|S000005056 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase of the DEAD-box
protein family" species:4932 "Saccharomyces cerevisiae" [GO:0071042
"nuclear polyadenylation-dependent mRNA catabolic process"
evidence=IGI;IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0008186 "RNA-dependent
ATPase activity" evidence=IMP;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;IPI] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005056 GO:GO:0005739 GO:GO:0005524
GO:GO:0005634 GO:GO:0000184 EMBL:BK006947 GO:GO:0003723 EMBL:Z69382
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
OrthoDB:EOG47SWP6 EMBL:X52649 EMBL:Z71388 EMBL:M64991 PIR:S13757
RefSeq:NP_014287.3 RefSeq:NP_014296.4 ProteinModelPortal:P24783
SMR:P24783 DIP:DIP-2438N IntAct:P24783 MINT:MINT-636962
STRING:P24783 PaxDb:P24783 PeptideAtlas:P24783 EnsemblFungi:YNL112W
GeneID:855611 GeneID:855620 KEGG:sce:YNL103W KEGG:sce:YNL112W
CYGD:YNL112w GeneTree:ENSGT00660000095174 NextBio:979789
Genevestigator:P24783 GermOnline:YNL112W Uniprot:P24783
Length = 546
Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
Identities = 199/449 (44%), Positives = 291/449 (64%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY+E + + + E++ +RK+ E+ I G D+PKPI T+ + G ++ ++
Sbjct: 73 FEKNFYVEHESVRDRSDSEIAQFRKENEMTISGHDIPKPITTFDEAGFPDYVLNEVKAEG 132
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
++KP IQ Q P+ +SGRD +G+A TGSGKTL++ LP + HI QP +A GDGP+ L++
Sbjct: 133 FDKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLAPGDGPIVLVL 192
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
APTREL QI ++ KF +R VYGG +QQI +L RG+EIV+ TPGR+ID+L
Sbjct: 193 APTRELAVQIQTECSKFGHSSRIRNTCVYGGVPKSQQIRDLSRGSEIVIATPGRLIDML- 251
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
GK TNL+RVTYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V+ LA
Sbjct: 252 -EIGK-TNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLA 309
Query: 667 RKVLNKPVEIQVGGRSV-VNKDITQLVEVRPE---SDRFLRLLELLGEWYEKGKILIFVH 722
LN P+++QVG + + +ITQ+VEV + DR + LE + E K LIF
Sbjct: 310 ADYLNDPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEY-KTLIFAS 368
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
++ CD + + L + G+P L++HG KDQ +R+ + +F++ +++AT VAARG+DVK
Sbjct: 369 TKRMCDDITKYLREDGWPALAIHGDKDQRERDWVLQEFRNGRSPIMVATDVAARGIDVKG 428
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
+ VIN+D P + EDYVHR+GRTGRAG G AI+F +E++ L+ + + Q +P
Sbjct: 429 INYVINYDMPGNIEDYVHRIGRTGRAGATGTAISFFTEQNKGLGAKLISIMREANQNIPP 488
Query: 843 DLKALADSFMAKVNQGLEQAHGTGYGGSG 871
+L + + G +G G GG G
Sbjct: 489 ELL----KYDRRSYGGGHPRYGGGRGGRG 513
>UNIPROTKB|C9JMU5 [details] [associations]
symbol:DDX17 "Probable ATP-dependent RNA helicase DDX17"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 EMBL:Z97056 IPI:IPI01022339
HGNC:HGNC:2740 ChiTaRS:DDX17 ProteinModelPortal:C9JMU5 SMR:C9JMU5
STRING:C9JMU5 PRIDE:C9JMU5 Ensembl:ENST00000381633
ArrayExpress:C9JMU5 Bgee:C9JMU5 Uniprot:C9JMU5
Length = 652
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 195/429 (45%), Positives = 282/429 (65%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 51 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 110
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ L+
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLV 170
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605
+APTREL QQ+ + K ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 171 LAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 230
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V L
Sbjct: 231 --ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQL 287
Query: 666 ARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIFVH 722
A L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IFV
Sbjct: 288 AEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVE 347
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL--DV 780
++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGL DV
Sbjct: 348 TKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLGFDV 407
Query: 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
++++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 408 EDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 467
Query: 841 PDDLKALAD 849
L L D
Sbjct: 468 NPKLMQLVD 476
>UNIPROTKB|A4QSS5 [details] [associations]
symbol:DBP2 "ATP-dependent RNA helicase DBP2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 EMBL:CM001233 GO:GO:0003723
GO:GO:0043581 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 OrthoDB:EOG47SWP6 RefSeq:XP_003712846.1
ProteinModelPortal:A4QSS5 EnsemblFungi:MGG_16901T0 GeneID:12985738
KEGG:mgr:MGG_16901 Uniprot:A4QSS5
Length = 548
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 201/450 (44%), Positives = 293/450 (65%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F K+FY E ++ + EV +R++ + + G DVPKP++T+ + G +M+ ++
Sbjct: 85 FEKHFYKEHPDVTNRSQAEVDKFRREHSMAVQGSDVPKPVETFDEAGFPRYVMDEVKAQG 144
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
+ P IQ+Q P+ +SGRD +G+A+TGSGKTL + LP + HI QP +A GDGP+ LI+
Sbjct: 145 FPAPTAIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLAPGDGPIVLIL 204
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
APTREL QI ++I KF K +R VYGG QI +L RG E+ + TPGR+ID+L
Sbjct: 205 APTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDML- 263
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
GK TNLRRVTYLV+DEADRM DMGFEPQI +I+ IRPDRQT+++SAT+P++V +A
Sbjct: 264 -ESGK-TNLRRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLMWSATWPKEVRNMA 321
Query: 667 RKVLNKPVEIQVGGRSV-VNKDITQLVEVRPES---DRFLRLLELLGEWYE-KGKILIFV 721
L +++ +G + N ITQ+VEV ES DR +R +E + + + K KILIFV
Sbjct: 322 ADFLQDFIQVNIGSLDLSANHRITQIVEVVSESEKRDRMIRHMEKVMDGKDSKNKILIFV 381
Query: 722 HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781
++ D + R L + G+P LS+HG K Q +R+ + FK+ +++AT VA+RG+DV+
Sbjct: 382 GTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLDQFKTGKSPIMVATDVASRGIDVR 441
Query: 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841
+ V+N+D PN+ EDY+HR+GRTGRAG KG AITF + E++K + DL+ L+ ++Q +
Sbjct: 442 NITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTENSKQARDLLGVLQEAKQEI- 500
Query: 842 DDLKALADSFMAKVNQGLEQAHGTGYGGSG 871
D + LA+ MA+ G GY G G
Sbjct: 501 -DPR-LAE--MARYGGGGGGGRYGGYRGRG 526
>ZFIN|ZDB-GENE-030131-18 [details] [associations]
symbol:si:dkey-156n14.5 "si:dkey-156n14.5"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-18 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
KO:K13178 EMBL:CR626864 IPI:IPI00896916 RefSeq:XP_001923830.1
UniGene:Dr.75535 Ensembl:ENSDART00000129202 GeneID:556764
KEGG:dre:556764 NextBio:20881652 ArrayExpress:F1QBS1 Bgee:F1QBS1
Uniprot:F1QBS1
Length = 671
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 194/433 (44%), Positives = 286/433 (66%)
Query: 422 IDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIME 480
+D P F KNFY E E+ M+ +V YR++ E+ + G PKP+ +HQ +M+
Sbjct: 49 LDQLPKFEKNFYNENPEVHHMSQYDVEEYRRKREITVRGSGCPKPVTNFHQAQFPQYVMD 108
Query: 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540
+ + N+++P IQAQ P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDG
Sbjct: 109 VLLQQNFKEPTAIQAQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDG 168
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600
P+ L++APTREL QQ+ + K ++ VYGG+ QI +L+RG EI + TPGR
Sbjct: 169 PICLVLAPTRELAQQVQQVAFDYGKSSRIKSTCVYGGAPKGPQIRDLERGVEICIATPGR 228
Query: 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660
+ID L GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P+
Sbjct: 229 LIDFL--EVGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 285
Query: 661 QVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKI 717
+V LA L V+I +G + N +I Q+V+V E+++ +L++L+ E EK K
Sbjct: 286 EVRQLAEDFLQDYVQINIGALELSANHNILQIVDVCMENEKDNKLIQLMEEIMAEKENKT 345
Query: 718 LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777
+IFV ++++CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RG
Sbjct: 346 IIFVETKKRCDELTRRMRRDGWPAMCIHGDKSQPERDWVLTEFRSGKAPILIATDVASRG 405
Query: 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837
LDV++++ VIN+D PN EDYVHR+GRT R+ KG A TF + + + + DLV+ LE +
Sbjct: 406 LDVEDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLRQARDLVRVLEEAR 465
Query: 838 QVVPDDLKALADS 850
Q + L L D+
Sbjct: 466 QAINPKLLQLVDT 478
>DICTYBASE|DDB_G0293168 [details] [associations]
symbol:ddx17 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0293168 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0000184 GO:GO:0003723 GO:GO:0006396
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 EMBL:AAFI02000199 KO:K12823 GO:GO:0008186
RefSeq:XP_629279.1 HSSP:P09052 ProteinModelPortal:Q54CE0
PRIDE:Q54CE0 EnsemblProtists:DDB0233431 GeneID:8629001
KEGG:ddi:DDB_G0293168 Uniprot:Q54CE0
Length = 785
Score = 953 (340.5 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
Identities = 182/423 (43%), Positives = 277/423 (65%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY+E ++++ T EE+ +R ++ + G++VP PI + Q +M+ I
Sbjct: 344 FEKNFYLEHPDVSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAG 403
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
+ P PIQ+QA P+ + GRD IG+AKTGSGKTLAF+LP + HI QP + DGP+ L++
Sbjct: 404 FPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVL 463
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
APTREL QI + KF + VYGG+ Q++ LK+G EIV+ TPGR+IDIL
Sbjct: 464 APTRELALQIQEETNKFGGTSQISNTCVYGGASKHTQVAALKKGVEIVIATPGRLIDIL- 522
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
GK TNLRRVTYLV+DEADRM DMGFEPQI +I+ IRPDRQT++FSAT+P++V+ LA
Sbjct: 523 -ESGK-TNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTLMFSATWPKEVQALA 580
Query: 667 RKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725
L +++ +G + N ++ Q+VEV + ++ R+L LG K+++F +++
Sbjct: 581 HDFLTDHIQVHIGSTEITANHNVRQIVEVCQDFEKKERMLSFLGSVGRDEKVIVFAETRK 640
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785
D L R L G+ + +HG K Q +R+ +S FK+ + ++IAT VA+RGLD+K+++
Sbjct: 641 GVDDLQRVLQFSGFKSIGIHGNKSQPERDFVLSQFKNGMVPIMIATDVASRGLDIKDIKY 700
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
V+N+D PN E Y+HR+GRT RAG G + + ++ ++A+ + +L+K L ++Q +P +L
Sbjct: 701 VVNYDFPNTIEVYIHRIGRTARAGASGVSYSLLTTDNARLANELIKVLTEAKQKIPIELS 760
Query: 846 ALA 848
L+
Sbjct: 761 NLS 763
Score = 37 (18.1 bits), Expect = 1.1e-97, Sum P(2) = 1.1e-97
Identities = 12/53 (22%), Positives = 17/53 (32%)
Query: 333 NTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYG 385
N+ + N+ S G S+G SS S G S + G
Sbjct: 123 NSSSNGYNSSNSSSSYGASNNGYNNSSGSSSSGSSGSSNGGSYNNSGSSNSNG 175
>FB|FBgn0003261 [details] [associations]
symbol:Rm62 "Rm62" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS;NAS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE014297 GO:GO:0005524 GO:GO:0005875
GO:GO:0006417 GO:GO:0016246 GO:GO:0022008 GO:GO:0003729
GO:GO:0019730 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0005703 GO:GO:0000381 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 GeneTree:ENSGT00660000095174 EMBL:X52846
EMBL:BT001716 EMBL:BT011476 EMBL:BT015209 PIR:S11485
RefSeq:NP_001163528.1 RefSeq:NP_001189182.1 RefSeq:NP_524243.2
RefSeq:NP_731031.1 RefSeq:NP_731032.1 RefSeq:NP_731033.1
RefSeq:NP_731034.1 RefSeq:NP_731035.2 UniGene:Dm.1520
ProteinModelPortal:P19109 SMR:P19109 DIP:DIP-17867N IntAct:P19109
MINT:MINT-301207 STRING:P19109 PaxDb:P19109 PRIDE:P19109
EnsemblMetazoa:FBtr0078652 GeneID:40739 KEGG:dme:Dmel_CG10279
CTD:40739 FlyBase:FBgn0003261 InParanoid:P19109 OMA:HISNQPR
OrthoDB:EOG4QBZMP PhylomeDB:P19109 GenomeRNAi:40739 NextBio:820339
Bgee:P19109 GermOnline:CG10279 Uniprot:P19109
Length = 719
Score = 970 (346.5 bits), Expect = 1.2e-97, P = 1.2e-97
Identities = 205/466 (43%), Positives = 294/466 (63%)
Query: 417 VDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTS 476
VD S + PF+KNFY E +A +P EV YR++ E+ + G+ VP PI+ + + L
Sbjct: 234 VDFSNL--APFKKNFYQEHPNVANRSPYEVQRYREEQEITVRGQ-VPNPIQDFSEVHLPD 290
Query: 477 KIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA 536
+M+ IR+ Y+ P IQAQ P+ MSG + +G+AKTGSGKTL ++LP + HI +Q P+
Sbjct: 291 YVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQ 350
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVC 596
GDGP+ L++APTREL QQI +F VR V+GG+ Q+ +L+RG EIV+
Sbjct: 351 RGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKGGQMRDLQRGCEIVIA 410
Query: 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656
TPGR+ID L S G TNL+R TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SA
Sbjct: 411 TPGRLIDFL--SAGS-TNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSA 467
Query: 657 TFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGEWYEK- 714
T+P++V+ LA L ++I +G + N +I Q+V+V E + +L LL + Y+
Sbjct: 468 TWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTS 527
Query: 715 ---GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
GKI+IFV ++ + D L R + G C ++HG K Q++R+ + +F+S N+L+AT
Sbjct: 528 ESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSNILVAT 587
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831
VAARGLDV ++ VINFD P + EDY+HR+GRTGR+ KG + F ++ +AK + LV
Sbjct: 588 DVAARGLDVDGIKYVINFDYPQNSEDYIHRIGRTGRSNTKGTSFAFFTKNNAKQAKALVD 647
Query: 832 ALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTG----YGGSGFK 873
L + Q + L+ LA + G + G G +GG GFK
Sbjct: 648 VLREANQEINPALENLARNSRYDGGGGRSRYGGGGGGGRFGGGGFK 693
>UNIPROTKB|F1NM08 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0003676 GO:GO:0003712 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
EMBL:AADN02030017 IPI:IPI00680367 Ensembl:ENSGALT00000005586
ArrayExpress:F1NM08 Uniprot:F1NM08
Length = 595
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 193/458 (42%), Positives = 290/458 (63%)
Query: 422 IDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIME 480
+D P F KNFY E ++ R T +EV YR E+ + G + PKPI +++ + +ME
Sbjct: 36 LDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVME 95
Query: 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540
I++ N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI QP + GDG
Sbjct: 96 VIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 155
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600
P+ L++APTREL QQ+ ++++ ++ +YGG+ QI +L+RG EI + TPGR
Sbjct: 156 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 215
Query: 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660
+ID L GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P+
Sbjct: 216 LIDFL--EAGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 272
Query: 661 QVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPE---SDRFLRLLE-LLGEWYEKG 715
+V LA L + V I +G + N +I Q+V+V + D+ +RL+E ++ E ++
Sbjct: 273 EVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSE--KEN 330
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK +LIAT VA+
Sbjct: 331 KTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 390
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K DL+ L
Sbjct: 391 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLRE 450
Query: 836 SEQVV-PDDLKALADSFMAKVNQGLEQAHGTGYGGSGF 872
+ Q + P L+ + D + + G G GF
Sbjct: 451 ANQAINPKLLQLIEDRGSGRSRGDRRDRYSAGKRG-GF 487
>UNIPROTKB|F1NXI3 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0003713 "transcription coactivator
activity" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0007623 "circadian rhythm" evidence=IEA] [GO:0030331 "estrogen
receptor binding" evidence=IEA] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0050681 "androgen receptor binding" evidence=IEA] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0045944 GO:GO:0000122
GO:GO:0003713 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AADN02030017 IPI:IPI00598253
ProteinModelPortal:F1NXI3 Ensembl:ENSGALT00000034644
ArrayExpress:F1NXI3 Uniprot:F1NXI3
Length = 603
Score = 953 (340.5 bits), Expect = 7.6e-96, P = 7.6e-96
Identities = 193/458 (42%), Positives = 290/458 (63%)
Query: 422 IDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIME 480
+D P F KNFY E ++ R T +EV YR E+ + G + PKPI +++ + +ME
Sbjct: 44 LDELPKFEKNFYQEHPDVVRRTAQEVEQYRSSKEVTVRGHNCPKPIINFYEANFPANVME 103
Query: 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540
I++ N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI QP + GDG
Sbjct: 104 VIQRQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 163
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600
P+ L++APTREL QQ+ ++++ ++ +YGG+ QI +L+RG EI + TPGR
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660
+ID L GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P+
Sbjct: 224 LIDFL--EAGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPK 280
Query: 661 QVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPE---SDRFLRLLE-LLGEWYEKG 715
+V LA L + V I +G + N +I Q+V+V + D+ +RL+E ++ E ++
Sbjct: 281 EVRQLAEDFLKEYVHINIGALELSANHNILQIVDVCHDVEKDDKLIRLMEEIMSE--KEN 338
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK +LIAT VA+
Sbjct: 339 KTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVAS 398
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K DL+ L
Sbjct: 399 RGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVNDLISVLRE 458
Query: 836 SEQVV-PDDLKALADSFMAKVNQGLEQAHGTGYGGSGF 872
+ Q + P L+ + D + + G G GF
Sbjct: 459 ANQAINPKLLQLIEDRGSGRSRGDRRDRYSAGKRG-GF 495
>UNIPROTKB|F1MBQ8 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0072332 "intrinsic apoptotic signaling pathway by p53
class mediator" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0060765 "regulation of androgen
receptor signaling pathway" evidence=IEA] [GO:0050681 "androgen
receptor binding" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IEA] [GO:0036002
"pre-mRNA binding" evidence=IEA] [GO:0033148 "positive regulation
of intracellular estrogen receptor signaling pathway" evidence=IEA]
[GO:0030331 "estrogen receptor binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0000122 GO:GO:0003713 GO:GO:0033148 GO:GO:0043517
GO:GO:0060765 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
KO:K12823 OMA:IDAMSGY GeneTree:ENSGT00660000095174 CTD:1655
EMBL:DAAA02049347 IPI:IPI01002739 RefSeq:NP_001178324.1
UniGene:Bt.64934 ProteinModelPortal:F1MBQ8 SMR:F1MBQ8 PRIDE:F1MBQ8
Ensembl:ENSBTAT00000024514 GeneID:533700 KEGG:bta:533700
NextBio:20876124 ArrayExpress:F1MBQ8 Uniprot:F1MBQ8
Length = 614
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 190/443 (42%), Positives = 284/443 (64%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFY 97
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 157
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
EI + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 218 VEICIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 454 SDLISVLREANQAINPKLLQLVE 476
>UNIPROTKB|F1PEA6 [details] [associations]
symbol:DDX5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=IEA] [GO:0003712 "transcription cofactor
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 EMBL:AAEX03006361
Ensembl:ENSCAFT00000018595 Uniprot:F1PEA6
Length = 671
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 190/443 (42%), Positives = 284/443 (64%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 96 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFY 154
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 155 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 214
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 215 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 274
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
EI + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 275 VEICIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 330
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 331 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 390
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK
Sbjct: 391 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 450
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 451 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 510
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 511 SDLISVLREANQAINPKLLQLVE 533
>UNIPROTKB|J3KTA4 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HGNC:HGNC:2746 ChiTaRS:DDX5 ProteinModelPortal:J3KTA4
Ensembl:ENST00000578804 Uniprot:J3KTA4
Length = 614
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 190/443 (42%), Positives = 284/443 (64%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFY 97
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 157
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
EI + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 218 VEICIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 454 SDLISVLREANQAINPKLLQLVE 476
>UNIPROTKB|P17844 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0005516 "calmodulin binding" evidence=IEA] [GO:0007623
"circadian rhythm" evidence=IEA] [GO:0019899 "enzyme binding"
evidence=IEA] [GO:0045069 "regulation of viral genome replication"
evidence=IEA] [GO:0048306 "calcium-dependent protein binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IMP;NAS]
[GO:0016049 "cell growth" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043517 "positive regulation of DNA damage response, signal
transduction by p53 class mediator" evidence=IMP] [GO:0072332
"intrinsic apoptotic signaling pathway by p53 class mediator"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA] [GO:2001014
"regulation of skeletal muscle cell differentiation" evidence=ISS]
[GO:0045667 "regulation of osteoblast differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0050681
"androgen receptor binding" evidence=IDA] [GO:0060765 "regulation
of androgen receptor signaling pathway" evidence=IMP] [GO:0033148
"positive regulation of intracellular estrogen receptor signaling
pathway" evidence=IDA] [GO:0003713 "transcription coactivator
activity" evidence=IDA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0030331 "estrogen receptor binding" evidence=IDA] [GO:0036002
"pre-mRNA binding" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005730 GO:GO:0016049 GO:GO:0001701 GO:GO:0045944
GO:GO:0006351 GO:GO:0000122 GO:GO:0003713 EMBL:CH471109
GO:GO:0033148 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0045069 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY HOVERGEN:HBG015893
GO:GO:2001014 EMBL:X52104 EMBL:AF015812 EMBL:BT006943 EMBL:AB451257
EMBL:BC016027 EMBL:X15729 EMBL:AJ010931 IPI:IPI00017617 PIR:JC1087
RefSeq:NP_004387.1 UniGene:Hs.279806 PDB:3FE2 PDB:4A4D PDBsum:3FE2
PDBsum:4A4D ProteinModelPortal:P17844 SMR:P17844 DIP:DIP-29844N
IntAct:P17844 MINT:MINT-5000516 STRING:P17844 PhosphoSite:P17844
DMDM:129383 SWISS-2DPAGE:P17844 PaxDb:P17844 PeptideAtlas:P17844
PRIDE:P17844 DNASU:1655 Ensembl:ENST00000225792
Ensembl:ENST00000574715 GeneID:1655 KEGG:hsa:1655 UCSC:uc002jej.2
CTD:1655 GeneCards:GC17M062494 HGNC:HGNC:2746 HPA:CAB005868
HPA:HPA020043 MIM:180630 neXtProt:NX_P17844 PharmGKB:PA27228
InParanoid:P17844 OrthoDB:EOG4BVRTM PhylomeDB:P17844 ChiTaRS:DDX5
EvolutionaryTrace:P17844 GenomeRNAi:1655 NextBio:6816
ArrayExpress:P17844 Bgee:P17844 CleanEx:HS_DDX5
Genevestigator:P17844 GermOnline:ENSG00000108654 Uniprot:P17844
Length = 614
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 190/443 (42%), Positives = 284/443 (64%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFY 97
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 157
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
EI + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 218 VEICIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 454 SDLISVLREANQAINPKLLQLVE 476
>UNIPROTKB|Q5R4I9 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9601 "Pongo abelii" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 KO:K12823 HOVERGEN:HBG015893
GO:GO:2001014 HSSP:P10081 CTD:1655 EMBL:CR861259
RefSeq:NP_001126958.1 UniGene:Pab.18500 ProteinModelPortal:Q5R4I9
PRIDE:Q5R4I9 GeneID:100173977 KEGG:pon:100173977 InParanoid:Q5R4I9
Uniprot:Q5R4I9
Length = 614
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 187/433 (43%), Positives = 280/433 (64%)
Query: 422 IDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIME 480
+D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ +++ + +M+
Sbjct: 48 LDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMD 107
Query: 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540
I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI QP + GDG
Sbjct: 108 VIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDG 167
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600
P+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG EI + TPGR
Sbjct: 168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 227
Query: 601 MIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659
+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P
Sbjct: 228 LIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWP 283
Query: 660 RQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GK 716
++V LA L + I +G + N +I Q+V+V + ++ +L+ L+ E EK K
Sbjct: 284 KEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENK 343
Query: 717 ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776
++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK +LIAT VA+R
Sbjct: 344 TIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDVASR 403
Query: 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836
GLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K DL+ L +
Sbjct: 404 GLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVLREA 463
Query: 837 EQVVPDDLKALAD 849
Q + L L +
Sbjct: 464 NQAINPKLLQLVE 476
>MGI|MGI:105037 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 5"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003712 "transcription cofactor activity" evidence=IDA]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003724 "RNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=ISO] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007623 "circadian rhythm" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0030331 "estrogen
receptor binding" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0033148 "positive regulation of
intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:0036002 "pre-mRNA binding" evidence=ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISO] [GO:0045069 "regulation of viral genome
replication" evidence=ISO] [GO:0045667 "regulation of osteoblast
differentiation" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0060765 "regulation of androgen receptor signaling pathway"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:0072332 "intrinsic apoptotic signaling pathway by
p53 class mediator" evidence=ISO] [GO:2001014 "regulation of
skeletal muscle cell differentiation" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271 Pfam:PF08061
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:105037
GO:GO:0005524 GO:GO:0005730 GO:GO:0008380 GO:GO:0007623
GO:GO:0001701 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0030529 GO:GO:0050681 GO:GO:0043517 GO:GO:0030331
GO:GO:0060765 GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381
EMBL:AL603664 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014 OrthoDB:EOG4BVRTM
ChiTaRS:DDX5 EMBL:X65627 IPI:IPI00420363 PIR:I48385
UniGene:Mm.220038 ProteinModelPortal:Q61656 SMR:Q61656
DIP:DIP-32293N IntAct:Q61656 STRING:Q61656 PhosphoSite:Q61656
PaxDb:Q61656 PRIDE:Q61656 InParanoid:Q61656 CleanEx:MM_DDX5
Genevestigator:Q61656 GermOnline:ENSMUSG00000020719 Uniprot:Q61656
Length = 614
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 190/443 (42%), Positives = 284/443 (64%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFY 97
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 157
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
EI + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 218 VEICIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 454 SDLISVLREANQAINPKLLQLVE 476
>RGD|619906 [details] [associations]
symbol:Ddx5 "DEAD (Asp-Glu-Ala-Asp) box helicase 5" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003712 "transcription cofactor
activity" evidence=ISO] [GO:0003713 "transcription coactivator
activity" evidence=IEA;ISO] [GO:0003724 "RNA helicase activity"
evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0007623 "circadian
rhythm" evidence=IEA;ISO] [GO:0019899 "enzyme binding"
evidence=IDA] [GO:0030331 "estrogen receptor binding"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0033148 "positive regulation of intracellular
estrogen receptor signaling pathway" evidence=IEA;ISO] [GO:0036002
"pre-mRNA binding" evidence=IEA;ISO] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=IEA;ISO] [GO:0045069 "regulation of viral genome
replication" evidence=IMP] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA;ISO] [GO:0048306 "calcium-dependent protein binding"
evidence=IDA] [GO:0050681 "androgen receptor binding"
evidence=IEA;ISO] [GO:0060765 "regulation of androgen receptor
signaling pathway" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072332 "intrinsic apoptotic
signaling pathway by p53 class mediator" evidence=IEA;ISO]
[GO:2001014 "regulation of skeletal muscle cell differentiation"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
RGD:619906 GO:GO:0005524 GO:GO:0005730 GO:GO:0001701 GO:GO:0045944
GO:GO:0019899 GO:GO:0000122 GO:GO:0003713 GO:GO:0005516
GO:GO:0048306 GO:GO:0033148 GO:GO:0043517 GO:GO:0060765
EMBL:CH473948 GO:GO:0072332 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0004004
GO:GO:0000381 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0036002
HOGENOM:HOG000268804 KO:K12823 OMA:IDAMSGY
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 CTD:1655
EMBL:BC079036 IPI:IPI00464718 RefSeq:NP_001007614.1
UniGene:Rn.162208 IntAct:Q6AYI1 STRING:Q6AYI1
Ensembl:ENSRNOT00000048490 GeneID:287765 KEGG:rno:287765
UCSC:RGD:619906 InParanoid:Q6AYI1 NextBio:626970
Genevestigator:Q6AYI1 Uniprot:Q6AYI1
Length = 615
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 190/443 (42%), Positives = 284/443 (64%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFY 97
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 157
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
EI + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 218 VEICIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 454 SDLISVLREANQAINPKLLQLVE 476
>UNIPROTKB|Q4R6M5 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9541 "Macaca fascicularis" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:2001014
HSSP:P10081 EMBL:AB169157 ProteinModelPortal:Q4R6M5 PRIDE:Q4R6M5
Uniprot:Q4R6M5
Length = 614
Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
Identities = 190/443 (42%), Positives = 283/443 (63%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFY 97
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 157
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
EI + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 218 VEICIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R +++FK
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERGWVLNEFKHGKAP 393
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 454 SDLISVLREANQAINPKLLQLVE 476
>FB|FBgn0035720 [details] [associations]
symbol:CG10077 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005875
EMBL:AE014296 GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 UniGene:Dm.7301
GeneID:38756 KEGG:dme:Dmel_CG10077 FlyBase:FBgn0035720
ChiTaRS:CG10077 GenomeRNAi:38756 NextBio:810234 EMBL:AY102660
RefSeq:NP_648062.2 SMR:Q8MZI3 IntAct:Q8MZI3 MINT:MINT-863686
STRING:Q8MZI3 EnsemblMetazoa:FBtr0076940 EnsemblMetazoa:FBtr0333083
UCSC:CG10077-RA InParanoid:Q8MZI3 OMA:WRACAIH Uniprot:Q8MZI3
Length = 818
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 194/459 (42%), Positives = 292/459 (63%)
Query: 420 SKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIM 479
S+++ PFRKNFY + T E + E+ I G VP P + + G +M
Sbjct: 110 SEVNLTPFRKNFYKPCDSVLARTVGETETFLTSNEITIKGDQVPTPSIEFEEGGFPDYVM 169
Query: 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539
IRK + KP IQAQ P+ MSGRD +GVA+TGSGKTLA+VLP + HI +QP + GD
Sbjct: 170 NEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGD 229
Query: 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPG 599
GP+ L++APTREL QQI +F VR ++GG+ QQ +L+RG EIV+ TPG
Sbjct: 230 GPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPG 289
Query: 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659
R+ID L G T+L+R TYLV+DEADRM DMGFEPQI +I+Q IRPDRQ +++SAT+P
Sbjct: 290 RLIDFL-ERG--TTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWP 346
Query: 660 RQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGEWYEKG--K 716
++V LA + LN +++ +G S+ N +I Q+V+V E+++ ++L++LL + + K
Sbjct: 347 KEVRQLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDENEKLMKLIKLLTDISAENETK 406
Query: 717 ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776
+IFV ++++ D + R++ + G+ ++HG K Q +R+ +S F++ ++L+AT VAAR
Sbjct: 407 TIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAAR 466
Query: 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836
GLDV +++ VIN+D P++ EDYVHR+GRTGR+ G A T + +A + DL++ L +
Sbjct: 467 GLDVDDVKFVINYDYPSNSEDYVHRIGRTGRSNNTGTAYTLFTHSNANKANDLIQVLREA 526
Query: 837 EQVVPDDLKALA-DSFMAKVNQGLEQAHGTGY-GGSGFK 873
Q + L +A + K G+ G GY GG+G++
Sbjct: 527 NQTINPKLMNMAMNGGYNKRGGGM----GGGYRGGNGYQ 561
>UNIPROTKB|A5A6J2 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9598 "Pan troglodytes" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003713 "transcription coactivator
activity" evidence=ISS] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0030331
"estrogen receptor binding" evidence=ISS] [GO:0043517 "positive
regulation of DNA damage response, signal transduction by p53 class
mediator" evidence=ISS] [GO:0045667 "regulation of osteoblast
differentiation" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0050681 "androgen receptor binding" evidence=ISS] [GO:0060765
"regulation of androgen receptor signaling pathway" evidence=ISS]
[GO:0072332 "intrinsic apoptotic signaling pathway by p53 class
mediator" evidence=ISS] [GO:2001014 "regulation of skeletal muscle
cell differentiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR012587
Pfam:PF00270 Pfam:PF00271 Pfam:PF08061 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0045944 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0000122 GO:GO:0003713
GO:GO:0050681 GO:GO:0043517 GO:GO:0030331 GO:GO:0060765
GO:GO:0045667 GO:GO:0072332 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513
GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K12823 HOVERGEN:HBG015893 GO:GO:2001014
CTD:1655 OrthoDB:EOG4BVRTM EMBL:AB222120 RefSeq:NP_001138306.1
UniGene:Ptr.274 ProteinModelPortal:A5A6J2 PRIDE:A5A6J2
GeneID:455267 KEGG:ptr:455267 InParanoid:A5A6J2 NextBio:20836697
Uniprot:A5A6J2
Length = 614
Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
Identities = 189/443 (42%), Positives = 283/443 (63%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWH 470
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G + PKP+ ++
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFY 97
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ + +M+ I + N+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI
Sbjct: 98 EANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHIN 157
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG
Sbjct: 158 HQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERG 217
Query: 591 TEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
E + TPGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDR
Sbjct: 218 VENCIATPGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR 273
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELL 708
QT+++SAT+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+
Sbjct: 274 QTLMWSATWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLM 333
Query: 709 GE-WYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
E EK K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK
Sbjct: 334 EEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAP 393
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+LIAT VA+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K
Sbjct: 394 ILIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQV 453
Query: 827 PDLVKALELSEQVVPDDLKALAD 849
DL+ L + Q + L L +
Sbjct: 454 SDLISVLREANQAINPKLLQLVE 476
>UNIPROTKB|F1RSJ7 [details] [associations]
symbol:DDX42 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008104 "protein localization" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008104 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:QGVNNTA
GeneTree:ENSGT00610000086076 EMBL:CU466402 EMBL:CU466386
Ensembl:ENSSSCT00000018821 Uniprot:F1RSJ7
Length = 941
Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
Identities = 220/575 (38%), Positives = 322/575 (56%)
Query: 310 DEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
D D DPL+AFM + +K +E + NV+ + D + + + N
Sbjct: 110 DSDDDPLEAFMAEVEDQAARDMKR-LEEKDKERKNVKGIRDDIEEEDDQEAYFRYMAENP 168
Query: 370 SLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
+ G + E+ + +Y K++ + L +DHS++D +
Sbjct: 169 TAGVVQEEEEDNLEYDSDGNPIAPS---------KKI----IDPLPPIDHSELD-----R 210
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLELKIH------GKDVPKPIKTWHQTGLTSKIMETIR 483
N Y E+K I E + A +L +H G P+P ++ G ++M IR
Sbjct: 211 N-YFEIKIIYNTKDECIDASNLELINTLHFISRVSGAAPPRPGSSFAHFGFDEQLMHQIR 269
Query: 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543
K Y +P PIQ Q +PV +SGRD IG+AKTGSGKT AF+ PML HI DQ + GDGP+
Sbjct: 270 KSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIA 329
Query: 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 603
+I+ PTREL QQIH++ ++F K +R V VYGG + +Q L+ G EIVVCTPGR+ID
Sbjct: 330 VIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLID 389
Query: 604 ILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663
+ K TNL+RV+YLV DEADRMFDMGFE Q+ I ++RPDRQT+LFSATF +++E
Sbjct: 390 HVKK---KATNLQRVSYLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIE 446
Query: 664 ILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DRFLRLLELLGEWYEKGKILIFVH 722
LAR +L P+ + G N+D+TQ+VE+ ++ L L E+ G +L+FV
Sbjct: 447 KLARDILIDPIRVVQGDIGEANEDVTQIVEILHSGPSKWNWLTRRLVEFTSSGSVLLFVT 506
Query: 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782
+ + L +L + G+ LHG DQ++R ISDFK +L+AT VAARGLD+
Sbjct: 507 KKANAEELANNLKQEGHNLGLLHGDMDQSERNKVISDFKKKDIPVLVATDVAARGLDIPS 566
Query: 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
++ VIN+D + + HR+GRTGRAG KG A T ++ +D+ ++ DLV+ LE + Q V
Sbjct: 567 IKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYTLLTPKDSNFAGDLVRNLEGANQHVSK 626
Query: 843 DLKALA--DSFMAK--VNQGLEQAHGTGYGGSGFK 873
+L LA +++ K G + G GG G++
Sbjct: 627 ELLDLAMQNAWFRKSRFKGGKGKKLNIGGGGLGYR 661
>FB|FBgn0029979 [details] [associations]
symbol:CG10777 species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE014298
GO:GO:0006200 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0016779
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:AY060404
RefSeq:NP_572424.1 UniGene:Dm.101 SMR:Q9W3M7 DIP:DIP-18838N
MINT:MINT-850836 EnsemblMetazoa:FBtr0071132 GeneID:31707
KEGG:dme:Dmel_CG10777 UCSC:CG10777-RB FlyBase:FBgn0029979
InParanoid:Q9W3M7 OMA:FLENRNT OrthoDB:EOG4B8GV9 GenomeRNAi:31707
NextBio:774939 Uniprot:Q9W3M7
Length = 945
Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
Identities = 189/455 (41%), Positives = 298/455 (65%)
Query: 407 KKTKAEKLSIVDHSKIDYQPFRKNFY-IEVKEIARMTPEEVSAYRKQLELKIHGKDVPKP 465
+K K ++V + +PF K+FY I +A+ + ++V+ R++LE+ + G ++P P
Sbjct: 177 EKAKNPGRNLVKPKWENLEPFLKDFYNIHPNTLAK-SEQQVAEIRRELEITVSGNELPHP 235
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+ ++ ++ L + ++E +++ + KP IQ+Q P+ +SGRD +G+A+TGSGKTLA++LP
Sbjct: 236 VVSFEESSLPAHVIEEMKRQGFTKPTAIQSQGWPIALSGRDLVGIAQTGSGKTLAYMLPA 295
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQ 583
+ HI +QPP+ G+GP+ L++APTREL QQI S +R + + +R ++GGS Q
Sbjct: 296 IVHIGNQPPIIRGEGPIALVLAPTRELAQQIQSVVRDYGHLCKPEIRHTCIFGGSSKVPQ 355
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+L RG E+++ TPGR+ID L + TNL+R TYLV+DEADRM DMGFEPQI +I++
Sbjct: 356 ARDLDRGVEVIIATPGRLIDFL---ENRNTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 412
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFL 702
IRPDRQ V++SAT+P++V+ LA LN ++I +G ++ N +I Q+VE+ E ++
Sbjct: 413 QIRPDRQVVMWSATWPKEVQALAGDFLNDYIQINIGSMNLSANHNIRQIVEICTEIEKPQ 472
Query: 703 RLLELLGEWY---EKG----KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755
RL+ LL E G KI++FV ++ K + + + + GY S+HG K Q +R+S
Sbjct: 473 RLVCLLNEISPIKNSGNNGNKIIVFVETKIKVEDILQIIRAEGYNATSIHGDKTQNERDS 532
Query: 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI 815
+ DF++ N+LIAT VA+RGLDV++L+ VIN+D PN E+YVHR+GRTGR + G A
Sbjct: 533 VLKDFRNGKSNILIATDVASRGLDVEDLQYVINYDYPNSSENYVHRIGRTGRCQQLGTAY 592
Query: 816 TFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TF + ++AK + +L+ LE + Q L LA S
Sbjct: 593 TFFTPDNAKQARELISVLEEAGQTPSQALLDLARS 627
>WB|WBGene00008119 [details] [associations]
symbol:C46F11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0000003 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268793 KO:K12835 GeneTree:ENSGT00610000086076
OMA:QEYANLM EMBL:Z81449 PIR:T19974 RefSeq:NP_497743.1
ProteinModelPortal:Q93382 SMR:Q93382 STRING:Q93382 PaxDb:Q93382
EnsemblMetazoa:C46F11.4 GeneID:175469 KEGG:cel:CELE_C46F11.4
UCSC:C46F11.4 CTD:175469 WormBase:C46F11.4 InParanoid:Q93382
NextBio:888300 Uniprot:Q93382
Length = 811
Score = 924 (330.3 bits), Expect = 9.0e-93, P = 9.0e-93
Identities = 232/621 (37%), Positives = 325/621 (52%)
Query: 241 NVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAA 300
N P RN L + + Q + + E + ++ D ++
Sbjct: 44 NAPVPPPNRNILLSNRKEQEMKKEQEYANLMAYGSTSEKQSRRKRIYDDEYLEGGSDDEK 103
Query: 301 PAL---QIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRR 357
PA ++ A +D++ D LDAFM +EK ++ D E K+ DRK
Sbjct: 104 PASSSSKLAADDDDEEDELDAFMAG-----IEKQASS------DKKVSEQKEKDRK---- 148
Query: 358 SNGEQPKKSSNKSLGRI-IPGEDSDS-------DYGXXXXXXXXXXXXXXXXFMKRVKKT 409
G+ + S K LGR I ED +Y + K
Sbjct: 149 -EGKDTEDPSKKGLGRADIDEEDMQESLFKFMEEYKEKHENDDEQLEYDEDGNIIWSWKK 207
Query: 410 KAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTW 469
+ L +DHS+I YQ F KNFY E ++I R+ +V + + L++ G P+P+ ++
Sbjct: 208 VIDPLPDIDHSQIQYQKFNKNFYEEHEDIKRLHYMDVIRLQNTMNLRVGGLKPPRPVCSF 267
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
+ME IRK YE+P PIQA A+P +SGRD +G+AKTGSGKT A++ P + HI
Sbjct: 268 AHFSFDKLLMEAIRKSEYEQPTPIQAMAIPSALSGRDVLGIAKTGSGKTAAYLWPAIVHI 327
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQP + AG+GPV +I+ PTREL Q+ + +KF KV + + YGG +Q +EL+
Sbjct: 328 MDQPDLKAGEGPVAVIVVPTRELAIQVFQEAKKFCKVYNINPICAYGGGSKWEQSNELQN 387
Query: 590 -GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648
G E+VVCTPGR+ID++ G TN R T+LV DEADRMFDMGFE Q+ I ++RPD
Sbjct: 388 EGAEMVVCTPGRIIDLV-KMGA--TNFLRTTFLVFDEADRMFDMGFEAQVKSISDHVRPD 444
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR-LLEL 707
RQ ++FSATF ++VE LAR L PV I G N DI Q V V D L L+
Sbjct: 445 RQCLMFSATFKQKVERLARDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRN 504
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
L E+ GK+LIFV + + + + L + + LHG Q +R + F+ +
Sbjct: 505 LVEFASLGKVLIFVTKKLDSEDVAKKLKMKDFDIVLLHGDMLQAERNENLLKFRKK-SQI 563
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
L+AT VAARGLD+ E+ VINFD + +VHR+GRTGRAG KG A T ++E+D +
Sbjct: 564 LVATDVAARGLDISEIRTVINFDMARDIDTHVHRIGRTGRAGHKGTAYTLVTEKDIEMVG 623
Query: 828 DLVKALELSEQVVPDDLKALA 848
LVK LE Q VP L LA
Sbjct: 624 HLVKNLESVSQEVPKPLMDLA 644
>SGD|S000000441 [details] [associations]
symbol:PRP5 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000348 "mRNA branch
site recognition" evidence=TAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000000441 GO:GO:0005524
GO:GO:0005681 EMBL:BK006936 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008186
GeneTree:ENSGT00610000086076 KO:K12811 HOGENOM:HOG000007229
GO:GO:0000348 OMA:SLVIIYN OrthoDB:EOG40CMR1 EMBL:M33191 EMBL:Z36106
EMBL:AY692817 PIR:A35791 RefSeq:NP_009796.1
ProteinModelPortal:P21372 SMR:P21372 DIP:DIP-88N IntAct:P21372
MINT:MINT-403988 STRING:P21372 PaxDb:P21372 EnsemblFungi:YBR237W
GeneID:852539 KEGG:sce:YBR237W CYGD:YBR237w NextBio:971604
Genevestigator:P21372 GermOnline:YBR237W Uniprot:P21372
Length = 849
Score = 848 (303.6 bits), Expect = 3.8e-92, Sum P(3) = 3.8e-92
Identities = 186/466 (39%), Positives = 281/466 (60%)
Query: 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETI-RKLNYEKPMPI 493
V ++ M EE+ +++K G PKP+ W Q GL++ M I KL++ PI
Sbjct: 225 VSSMSEMEVEELRLSLDNIKIK--GTGCPKPVTKWSQLGLSTDTMVLITEKLHFGSLTPI 282
Query: 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD-GPVGLIMAPTREL 552
Q+QALP IMSGRD IG++KTGSGKT++++LP+LR +K Q P++ + GP+GLI+APTREL
Sbjct: 283 QSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRPLSKHETGPMGLILAPTREL 342
Query: 553 VQQIHSDIRKFAKV-MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 611
QIH ++ KF + +R V GGS + +QI++LKRGTEIVV TPGR IDIL + GK
Sbjct: 343 ALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTEIVVATPGRFIDILTLNDGK 402
Query: 612 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLN 671
+ + +R+T++VMDEADR+FD+GFEPQIT+I++ +RPD+Q VLFSATFP ++ A +VL+
Sbjct: 403 LLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCVLFSATFPNKLRSFAVRVLH 462
Query: 672 KPVEIQVGGRSVVNKDITQLVEV-RPESDRFLRLLELL---GEWYEK------------- 714
P+ I + + +VN+++ Q + E ++F L++L+ E++++
Sbjct: 463 SPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHERSEFFDEVQSENDGQSSDVE 522
Query: 715 ---GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
K +IFV SQ CD + + LL G ++H K +R + FK ++L+ T
Sbjct: 523 EVDAKAIIFVSSQNICDFISKKLLNAGIVTCAIHAGKPYQERLMNLEKFKREKNSILLCT 582
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831
V +RGL+V E+ LVI ++A + YVH GRT R R G AIT + ++ + L K
Sbjct: 583 EVLSRGLNVPEVSLVIIYNAVKTFAQYVHTTGRTARGSRSGTAITLLLHDELSGAYILSK 642
Query: 832 ALELSEQVVPDDLKALA-DSFMAKVNQGLEQAH---GTGYGGSGFK 873
A+ E D L+A AK G+++ G+GG G +
Sbjct: 643 AMRDEEIKALDPLQAKELQEMSAKFESGMKKGKFRLSKGFGGKGLE 688
Score = 745 (267.3 bits), Expect = 5.2e-77, Sum P(2) = 5.2e-77
Identities = 155/359 (43%), Positives = 236/359 (65%)
Query: 361 EQPKKSSNKSL---GRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEK-LSI 416
++ K S++K + G I+ ED + G + ++ K KA+K +
Sbjct: 146 KEEKMSNSKGMYDRGDILDVEDQLFELGGTDDEDVEDNTDNSN--IAKIAKLKAKKRVKQ 203
Query: 417 VDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLT 475
+ +S + +PF+KNFYIE + ++ M+ EV R L+ +KI G PKP+ W Q GL+
Sbjct: 204 IYYSPEELEPFQKNFYIESETVSSMSEMEVEELRLSLDNIKIKGTGCPKPVTKWSQLGLS 263
Query: 476 SKIMETI-RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534
+ M I KL++ PIQ+QALP IMSGRD IG++KTGSGKT++++LP+LR +K Q P
Sbjct: 264 TDTMVLITEKLHFGSLTPIQSQALPAIMSGRDVIGISKTGSGKTISYLLPLLRQVKAQRP 323
Query: 535 VAAGD-GPVGLIMAPTRELVQQIHSDIRKFAKV-MGVRCVPVYGGSGVAQQISELKRGTE 592
++ + GP+GLI+APTREL QIH ++ KF + +R V GGS + +QI++LKRGTE
Sbjct: 324 LSKHETGPMGLILAPTRELALQIHEEVTKFTEADTSIRSVCCTGGSEMKKQITDLKRGTE 383
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
IVV TPGR IDIL + GK+ + +R+T++VMDEADR+FD+GFEPQIT+I++ +RPD+Q V
Sbjct: 384 IVVATPGRFIDILTLNDGKLLSTKRITFVVMDEADRLFDLGFEPQITQIMKTVRPDKQCV 443
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV-RPESDRFLRLLELLGE 710
LFSATFP ++ A +VL+ P+ I + + +VN+++ Q + E ++F L++L+ E
Sbjct: 444 LFSATFPNKLRSFAVRVLHSPISITINSKGMVNENVKQKFRICHSEDEKFDNLVQLIHE 502
Score = 54 (24.1 bits), Expect = 3.8e-92, Sum P(3) = 3.8e-92
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 303 LQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGN--NVESKKMDRKGDRRSNG 360
+Q D + DPLD FM S+ + EK+ N+ + + G+ +VE + + G +
Sbjct: 125 IQKAPEHDNEKDPLDEFMTSL---KEEKMSNS-KGMYDRGDILDVEDQLFELGGTDDEDV 180
Query: 361 EQPKKSSN 368
E +SN
Sbjct: 181 EDNTDNSN 188
Score = 49 (22.3 bits), Expect = 3.8e-92, Sum P(3) = 3.8e-92
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 930 KLYLFIEGPTEQSVKRAKAELKRVLEDFTNQALSL 964
KLYL IEG E+ ++ + L++ +++ +A SL
Sbjct: 808 KLYLLIEGQDEKDIQLSIELLEQKVKEGVVKAASL 842
Score = 42 (19.8 bits), Expect = 6.8e-91, Sum P(3) = 6.8e-91
Identities = 23/102 (22%), Positives = 44/102 (43%)
Query: 246 KAGRNWTLDREDSDDEEVPQTGKSETDM----DADEEPKPSEN---QVGDAMLVDSDG-- 296
K + + D D DD E+ + +S+ + + D E P + + + + +S G
Sbjct: 98 KVKKKISFDFSDDDDSEIGVSFRSKEHIQKAPEHDNEKDPLDEFMTSLKEEKMSNSKGMY 157
Query: 297 --GSAAPA----LQIGAAEDEDIDPLDAFMNSMVLPEVEKLK 332
G ++G +DED++ D NS + ++ KLK
Sbjct: 158 DRGDILDVEDQLFELGGTDDEDVE--DNTDNSNIA-KIAKLK 196
>GENEDB_PFALCIPARUM|PF14_0437 [details] [associations]
symbol:PF14_0437 "helicase, truncated,
putative" species:5833 "Plasmodium falciparum" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014187 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_001348611.2 ProteinModelPortal:Q8IL13 IntAct:Q8IL13
MINT:MINT-1661155 PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA
GeneID:812019 KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 186/443 (41%), Positives = 288/443 (65%)
Query: 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWH 470
+ L+ +D I+ PF KNFY E ++I++++ +EV R + ++ I G++VPKP+ + +
Sbjct: 57 KNLAPIDWKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSIN 116
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ G ++++++ N P PIQ Q P+ +SG+D IG A+TGSGKTLAF+LP HI
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHIL 176
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL +QI + KF+ +R YGG + QI LK+G
Sbjct: 177 AQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQG 236
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
I++ PGR+ID+L + +TNL RVTYLV+DEAD+M DMGFE QI +IV IRPDRQ
Sbjct: 237 VHILIACPGRLIDLLEQN---VTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQ 293
Query: 651 TVLFSATFPRQVEILARKVLNK-PVEIQVGGRSVVN-KDITQLVEVRPESDRFLRLLELL 708
T+++SAT+P++V+ LA+ + + P+++ VG ++ + I Q + + E ++ L LL
Sbjct: 294 TLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLL 353
Query: 709 GEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
+ + +I++FV +++ D + + L G P L +HG K Q +R +++FK+ +
Sbjct: 354 QRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPI 413
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
+IAT VA+RGLD+K ++ VINFD PN EDYVHR+GRTGRAG G + TF++ + + +
Sbjct: 414 MIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAK 473
Query: 828 DLVKALELSEQVVPDDLKALADS 850
DLVK L SEQ VP L+ ++ S
Sbjct: 474 DLVKILRESEQPVPPQLEKISYS 496
>UNIPROTKB|Q8IL13 [details] [associations]
symbol:PF14_0437 "Helicase, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014187
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_001348611.2
ProteinModelPortal:Q8IL13 IntAct:Q8IL13 MINT:MINT-1661155
PRIDE:Q8IL13 EnsemblProtists:PF14_0437:mRNA GeneID:812019
KEGG:pfa:PF14_0437 EuPathDB:PlasmoDB:PF3D7_1445900
HOGENOM:HOG000199241 ProtClustDB:PTZ00110 Uniprot:Q8IL13
Length = 527
Score = 915 (327.2 bits), Expect = 8.1e-92, P = 8.1e-92
Identities = 186/443 (41%), Positives = 288/443 (65%)
Query: 412 EKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWH 470
+ L+ +D I+ PF KNFY E ++I++++ +EV R + ++ I G++VPKP+ + +
Sbjct: 57 KNLAPIDWKTINLVPFEKNFYKEHEDISKLSTKEVKEIRDKHKITILEGENVPKPVVSIN 116
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ G ++++++ N P PIQ Q P+ +SG+D IG A+TGSGKTLAF+LP HI
Sbjct: 117 KIGFPDYVIKSLKNNNIVAPTPIQIQGWPIALSGKDMIGKAETGSGKTLAFILPAFVHIL 176
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
QP + GDGP+ L++APTREL +QI + KF+ +R YGG + QI LK+G
Sbjct: 177 AQPNLKYGDGPIVLVLAPTRELAEQIRQECIKFSTESKIRNTCAYGGVPKSGQIYALKQG 236
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
I++ PGR+ID+L + +TNL RVTYLV+DEAD+M DMGFE QI +IV IRPDRQ
Sbjct: 237 VHILIACPGRLIDLLEQN---VTNLMRVTYLVLDEADKMLDMGFELQIRKIVDQIRPDRQ 293
Query: 651 TVLFSATFPRQVEILARKVLNK-PVEIQVGGRSVVN-KDITQLVEVRPESDRFLRLLELL 708
T+++SAT+P++V+ LA+ + + P+++ VG ++ + I Q + + E ++ L LL
Sbjct: 294 TLMWSATWPKEVQALAKDLCKEQPIQVNVGSLTLTACRSIKQEIYLLEEHEKIGNLKSLL 353
Query: 709 GEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
+ + +I++FV +++ D + + L G P L +HG K Q +R +++FK+ +
Sbjct: 354 QRIFKDNDRIIVFVETKKNADFITKALRLDGMPALCIHGDKKQEERRWVLNEFKTGKSPI 413
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
+IAT VA+RGLD+K ++ VINFD PN EDYVHR+GRTGRAG G + TF++ + + +
Sbjct: 414 MIATDVASRGLDIKNVKYVINFDFPNQIEDYVHRIGRTGRAGSHGASFTFLTADKYRLAK 473
Query: 828 DLVKALELSEQVVPDDLKALADS 850
DLVK L SEQ VP L+ ++ S
Sbjct: 474 DLVKILRESEQPVPPQLEKISYS 496
>WB|WBGene00010260 [details] [associations]
symbol:F58E10.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
GeneTree:ENSGT00660000095174 HSSP:P10081 EMBL:Z81555 PIR:T22917
RefSeq:NP_001041134.1 ProteinModelPortal:Q9XUW5 SMR:Q9XUW5
STRING:Q9XUW5 PaxDb:Q9XUW5 PRIDE:Q9XUW5 EnsemblMetazoa:F58E10.3a.1
EnsemblMetazoa:F58E10.3a.2 EnsemblMetazoa:F58E10.3a.3
EnsemblMetazoa:F58E10.3a.4 EnsemblMetazoa:F58E10.3a.5 GeneID:179897
KEGG:cel:CELE_F58E10.3 UCSC:F58E10.3a.1 CTD:179897
WormBase:F58E10.3a InParanoid:Q9XUW5 OMA:YVLQEIT NextBio:907314
ArrayExpress:Q9XUW5 Uniprot:Q9XUW5
Length = 561
Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
Identities = 192/464 (41%), Positives = 290/464 (62%)
Query: 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+L VD S + P K+FY E ++R E+ + ++ + G+ VP+P+ +++
Sbjct: 76 RLRDVDWSAENLTPIEKDFYHENAAVSRREQYEIDQWVSANQVTLEGRGVPRPVFEFNEA 135
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L +I E + ++KP IQ+ + P+ MSGRD I +AKTGSGKTLAF+LP L HI Q
Sbjct: 136 PLPGQIHELLYG-KFQKPTVIQSISWPIAMSGRDIISIAKTGSGKTLAFMLPALVHITKQ 194
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
G+GP L++ PTREL QQ+ F +G++ ++GG+ Q +L+RG +
Sbjct: 195 AHRQRGEGPAVLVLLPTRELAQQVQEVSIDFCHSLGLKMTCLFGGASKGPQARDLERGVD 254
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
IVV TPGR++D L +G TN+++ +YLV+DEADRM DMGFEPQI +I+ IRPDRQT+
Sbjct: 255 IVVATPGRLLDFL-DNG--TTNMKKCSYLVLDEADRMLDMGFEPQIKKIIGQIRPDRQTL 311
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEW 711
+FSAT+P++V LA + VG + N +ITQ+V++ E + +L+ELL
Sbjct: 312 MFSATWPKEVRALASDFQKDAAFLNVGSLELAANHNITQVVDILEEHAKQAKLMELLNHI 371
Query: 712 YEKG--KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ K +IFV ++ K D L R + + G+P L +HG K+Q +R+ + +FK+ +++
Sbjct: 372 MNQKECKTIIFVETKRKADELTRAMRRDGWPTLCIHGDKNQGERDWVLQEFKAGKTPIML 431
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
AT VAARGLDV +++ VIN+D PN+ EDYVHR+GRTGR+ +KG A TF + +A + DL
Sbjct: 432 ATDVAARGLDVDDIKFVINYDYPNNSEDYVHRIGRTGRSDKKGTAYTFFTHTNASKAKDL 491
Query: 830 VKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFK 873
+K L+ ++Q VP +AL D MA + G + G YGG GF+
Sbjct: 492 LKVLDEAKQTVP---QALRD--MANRSYGGSNSRGR-YGGGGFQ 529
>FB|FBgn0037549 [details] [associations]
symbol:CG7878 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006200 GO:GO:0003723 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095174
HSSP:P10081 OMA:VLDITHV EMBL:AY051831 RefSeq:NP_649767.1
UniGene:Dm.1098 SMR:Q7K4L8 IntAct:Q7K4L8 EnsemblMetazoa:FBtr0113205
GeneID:40959 KEGG:dme:Dmel_CG7878 UCSC:CG7878-RA
FlyBase:FBgn0037549 InParanoid:Q7K4L8 OrthoDB:EOG47D7XG
GenomeRNAi:40959 NextBio:20818674 Uniprot:Q7K4L8
Length = 703
Score = 891 (318.7 bits), Expect = 2.8e-89, P = 2.8e-89
Identities = 185/464 (39%), Positives = 288/464 (62%)
Query: 426 PFRKNFYIEVKEIARMTPEEVSAYRKQ-----LELKIHGKD------VPKPIKTWHQTGL 474
P KNFY E E+A +T E+ R++ + K+ +P P+ T+ Q
Sbjct: 230 PLTKNFYKEAPEVANLTKSEIERIREENNKITVSYVFEPKEGETSPPIPNPVWTFEQCFA 289
Query: 475 T-SKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
++E I K+ + KP PIQ+QA P+++ G D IG+A+TG+GKTLAF+LP + H + Q
Sbjct: 290 EYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKTLAFLLPGMIHTEYQS 349
Query: 534 -PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
P G L++APTREL QI +++K++ G++ V VYGG QIS+L+RG E
Sbjct: 350 TPRGTRGGANVLVLAPTRELALQIEMEVKKYS-FRGMKAVCVYGGGNRNMQISDLERGAE 408
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
I++CTPGR+ D++ + + ++ +TYLV+DEADRM DMGFEPQI +++ +IRPDRQT+
Sbjct: 409 IIICTPGRLNDLIMAN---VIDVSTITYLVLDEADRMLDMGFEPQIRKVMLDIRPDRQTI 465
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPES-DRFLRLLELLGE 710
+ SAT+P V LA+ + P+++ VG + + Q++++ + D+F + +
Sbjct: 466 MTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLMEDDMDKFNTITSFVKN 525
Query: 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
KI+IF + + D L +L G+ +HG +DQ DRE I+D KS V +L+A
Sbjct: 526 MSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVRILVA 585
Query: 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830
T VA+RGLD++++ VIN+D P++ E+YVHRVGRTGRAGR+G +I+F + ED + +L+
Sbjct: 586 TDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFTREDWAMAKELI 645
Query: 831 KALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKF 874
+ L+ +EQ VPD+L +A F A ++ A G G+GG G +F
Sbjct: 646 EILQEAEQEVPDELHNMARRFKAMKDK--RAAEGGGFGGRGGRF 687
>UNIPROTKB|E9PT29 [details] [associations]
symbol:Ddx17 "Protein Ddx17" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0009791 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 GO:GO:0072358 IPI:IPI00858352
PRIDE:E9PT29 Ensembl:ENSRNOT00000018185 Uniprot:E9PT29
Length = 651
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 188/429 (43%), Positives = 272/429 (63%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDV-PKPIKTWHQTGLTSKIMETIRKL 485
F KNFY+E E+AR+TP EV R++ E+ + G DV PKP+ +H +M+ +
Sbjct: 51 FEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQ 110
Query: 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545
++ +P PIQ Q P+ +SGRD +G+A+TGSGKTLA++LP + HI QP + GDGP+ +
Sbjct: 111 HFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPIVSV 170
Query: 546 MA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 603
+ T V + +D KF K + V G S Q++ L + EI + TPGR ID
Sbjct: 171 LPFFSTLFSVYRGGTDF-KF-KCSSLFWVCFLGQSLKGQRLEWLSQCVEICIATPGR-ID 227
Query: 604 ILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663
L GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V
Sbjct: 228 FL--ESGK-TNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 284
Query: 664 ILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK-GKILIF 720
LA L +I VG + N +I Q+V+V ES++ +L++L+ E EK K +IF
Sbjct: 285 QLAEDFLRDYTQINVGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIF 344
Query: 721 VHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780
V ++ +CD L R + + G+P + +HG K Q +R+ +++F+S +LIAT VA+RGLDV
Sbjct: 345 VETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGKAPILIATDVASRGLDV 404
Query: 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
++++ VIN+D PN EDYVHR+GRT R+ KG A TF + + K + +L+K LE + Q +
Sbjct: 405 EDVKFVINYDYPNSSEDYVHRIGRTARSTNKGTAYTFFTPGNLKQARELIKVLEEANQAI 464
Query: 841 PDDLKALAD 849
L L D
Sbjct: 465 NPKLMQLVD 473
>TAIR|locus:2081061 [details] [associations]
symbol:AT3G06480 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005773
"vacuole" evidence=IDA] [GO:0006635 "fatty acid beta-oxidation"
evidence=RCA] [GO:0016558 "protein import into peroxisome matrix"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001202
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00397 PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS51194 SMART:SM00456 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0000184 GO:GO:0003723 EMBL:AC011623 Gene3D:2.20.70.10
SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12823 IPI:IPI00528334 RefSeq:NP_187299.1
UniGene:At.27592 ProteinModelPortal:Q9SQV1 SMR:Q9SQV1 PaxDb:Q9SQV1
PRIDE:Q9SQV1 EnsemblPlants:AT3G06480.1 GeneID:819825
KEGG:ath:AT3G06480 GeneFarm:1016 TAIR:At3g06480
HOGENOM:HOG000154116 InParanoid:Q9SQV1 OMA:GMRENSF PhylomeDB:Q9SQV1
ProtClustDB:CLSN2915418 Genevestigator:Q9SQV1 GermOnline:AT3G06480
Uniprot:Q9SQV1
Length = 1088
Score = 874 (312.7 bits), Expect = 1.8e-87, P = 1.8e-87
Identities = 177/422 (41%), Positives = 270/422 (63%)
Query: 432 YIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPM 491
++ ++ ++P E+ YRKQ E+ G+++P P T+ +GL +I+ + + P
Sbjct: 402 FVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPT 459
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLP---MLRHIKDQPPVAAGDGPVGLIMAP 548
PIQAQ P+ + RD + +AKTGSGKTL +++P +LRH ++ + +GP LI+AP
Sbjct: 460 PIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLRHCRND----SRNGPTVLILAP 515
Query: 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
TREL QI + +F + + C +YGG+ Q+ EL+RG +IVV TPGR+ DIL
Sbjct: 516 TRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLNDILEM- 574
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668
K+ + ++V+ LV+DEADRM DMGFEPQI +IV I P RQT++++AT+P++V +A
Sbjct: 575 --KMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASD 632
Query: 669 VLNKPVEIQVG--GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK 726
+L PV++ +G NK ITQ VEV P+ ++ RL ++L K++IF ++
Sbjct: 633 LLVNPVQVNIGRVDELAANKAITQYVEVVPQMEKERRLEQILRSQERGSKVIIFCSTKRL 692
Query: 727 CDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786
CD L R + +H + + +HG K Q +R+ ++ F+S +LIAT VAARGLD+K++ +V
Sbjct: 693 CDHLARSVGRH-FGAVVIHGDKTQGERDWVLNQFRSGKSCVLIATDVAARGLDIKDIRVV 751
Query: 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKA 846
IN+D P EDYVHR+GRTGRAG G A TF +E+D KY+PDL+K LE + Q VP ++
Sbjct: 752 INYDFPTGVEDYVHRIGRTGRAGATGVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRD 811
Query: 847 LA 848
+A
Sbjct: 812 IA 813
>TAIR|locus:2084178 [details] [associations]
symbol:DRH1 "DEAD box RNA helicase 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001202 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00397
PROSITE:PS00039 PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194
SMART:SM00456 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000184 GO:GO:0003723
EMBL:AC009325 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K12823
EMBL:AB010259 EMBL:AY062591 EMBL:AF428313 EMBL:AY050375
EMBL:BT000795 EMBL:BT009670 IPI:IPI00544638 IPI:IPI00545196
PIR:T52137 RefSeq:NP_001030619.1 RefSeq:NP_566141.1
RefSeq:NP_850492.1 RefSeq:NP_974206.1 UniGene:At.22096
ProteinModelPortal:Q8H136 SMR:Q8H136 IntAct:Q8H136 STRING:Q8H136
PaxDb:Q8H136 PRIDE:Q8H136 EnsemblPlants:AT3G01540.2
EnsemblPlants:AT3G01540.3 EnsemblPlants:AT3G01540.4 GeneID:821116
KEGG:ath:AT3G01540 GeneFarm:931 TAIR:At3g01540 InParanoid:Q8H136
OMA:DPSTEAY PhylomeDB:Q8H136 ProtClustDB:CLSN2687967
Genevestigator:Q8H136 GermOnline:AT3G01540 Uniprot:Q8H136
Length = 619
Score = 844 (302.2 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
Identities = 176/440 (40%), Positives = 275/440 (62%)
Query: 439 ARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQAL 498
+ ++PE AY ++ E+ + G VP P+ ++ TG +++ + + P PIQAQ+
Sbjct: 133 SELSPE---AYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSW 189
Query: 499 PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558
P+ M GRD + +AKTGSGKTL +++P H++ + + GP L+++PTREL QI
Sbjct: 190 PIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQ-RIRNDSRMGPTILVLSPTRELATQIQE 248
Query: 559 DIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618
+ KF + + C +YGG+ Q+ +L+RG +IVV TPGR+ DIL +I+ LR++
Sbjct: 249 EAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDIL--EMRRIS-LRQI 305
Query: 619 TYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+YLV+DEADRM DMGFEPQI +IV+ I RQT++++AT+P+ V +A +L P ++ +
Sbjct: 306 SYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVNI 365
Query: 679 GG--RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK 736
G V NK ITQ +EV ++ RL ++L K++IF ++ CD L R+L +
Sbjct: 366 GNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTR 425
Query: 737 HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796
+ ++HG K Q +R++ ++ F+S +L+AT VAARGLDVK++ V+N+D PN E
Sbjct: 426 Q-FGAAAIHGDKSQPERDNVLNQFRSGRTPVLVATDVAARGLDVKDIRAVVNYDFPNGVE 484
Query: 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD---SFMA 853
DYVHR+GRTGRAG G A TF ++D+K++ DL+K LE + Q VP ++ +A M
Sbjct: 485 DYVHRIGRTGRAGATGQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMATRGGGGMN 544
Query: 854 KVNQGLEQAHGTGYGG-SGF 872
K ++ + G G GG SG+
Sbjct: 545 KFSRWGPPSGGRGRGGDSGY 564
Score = 37 (18.1 bits), Expect = 3.5e-86, Sum P(2) = 3.5e-86
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 258 SDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAA 308
S +V QT D D+ + SE +V S+GG + P GAA
Sbjct: 64 SSSVQVQQTDAYAPPKDDDKYSRGSE-RVSRF----SEGGRSGPPYSNGAA 109
>ZFIN|ZDB-GENE-080204-77 [details] [associations]
symbol:ddx43 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
43" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
ZFIN:ZDB-GENE-080204-77 GO:GO:0005524 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
GeneTree:ENSGT00660000095174 HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ
EMBL:BX890626 EMBL:CR354610 IPI:IPI00886666 UniGene:Dr.41756
Ensembl:ENSDART00000101479 OMA:IDITSIT Uniprot:B8A609
Length = 719
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 191/464 (41%), Positives = 276/464 (59%)
Query: 423 DYQPFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGK-DVPKPIKTWHQT-GL 474
D +KNFYIE K +A + EEV +RK+ +LK K +P P+ T+ +
Sbjct: 226 DLPVLKKNFYIEAKSVAARSAEEVKIWRKENNNIFVDDLKDGDKRTIPNPVCTFEEAFAH 285
Query: 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP- 533
IME I ++ ++KP PIQ+QA PV+++G D IG+A+TG+GKTLA++LP H+ QP
Sbjct: 286 YPGIMENIVRVGFKKPTPIQSQAWPVVLNGIDLIGIAQTGTGKTLAYLLPGFIHMDGQPM 345
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
P +GP L++ PTREL QI ++ K++ G + + +YGG QI + G +I
Sbjct: 346 PRDKRNGPGMLVLTPTRELALQIEAECNKYS-YKGFKSICIYGGGDRNAQIKVVTSGVDI 404
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
V+ TPGR+ D+ ++ NLR +TYLV+DEADRM DMGFEPQI +I+ +IRPDRQTV+
Sbjct: 405 VIATPGRLNDLQMN---ELINLRSITYLVLDEADRMLDMGFEPQIMKIILDIRPDRQTVM 461
Query: 654 FSATFPRQVEILARKVLNKPVEIQVG--GRSVVNKDITQLVEVRPESDRFLRLLELLGEW 711
SAT+P V LA+ L P+ + VG + VN + Q V E ++ + + +
Sbjct: 462 TSATWPPGVRRLAKSYLKDPMMVYVGTLDLAAVNT-VQQTVLFVQEDEKKDYVFDFIHRM 520
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
K+LIFV + K D L DL G SLHG ++Q DRE + DFK +L+AT
Sbjct: 521 EPLDKVLIFVGKKLKADDLSSDLCLQGIAVQSLHGDREQCDREEALQDFKDGRVRILVAT 580
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831
+A+RGLDV ++ V N+D P + E+YVHRVGRTGRAGR G ++T ++ ED + + +L+
Sbjct: 581 DLASRGLDVHDITHVFNYDFPRNVEEYVHRVGRTGRAGRSGESVTLVTREDWRVAAELIT 640
Query: 832 ALELSEQVVPDDLKALADSF----MAKVNQGLEQAHGTGYGGSG 871
LE S Q VP++L +A+ + K G G G GG G
Sbjct: 641 ILERSGQDVPEELVLMAERYEKHRREKEMFGPRSGRGGGGGGGG 684
>TAIR|locus:2057640 [details] [associations]
symbol:AT2G33730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006486 "protein glycosylation"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 EMBL:U78721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE EMBL:AY065194 EMBL:AY093244 IPI:IPI00525282 PIR:H84748
RefSeq:NP_180929.1 UniGene:At.27506 ProteinModelPortal:P93008
SMR:P93008 STRING:P93008 PaxDb:P93008 PRIDE:P93008
EnsemblPlants:AT2G33730.1 GeneID:817938 KEGG:ath:AT2G33730
GeneFarm:938 TAIR:At2g33730 InParanoid:P93008 PhylomeDB:P93008
ProtClustDB:CLSN2683508 Genevestigator:P93008 GermOnline:AT2G33730
Uniprot:P93008
Length = 733
Score = 825 (295.5 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 172/429 (40%), Positives = 259/429 (60%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K + MT + +R+ + G +P+P+++W ++ LTS++++ + + Y+KP PIQ
Sbjct: 282 KRLEEMTERDWRIFREDFNISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQM 341
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG---DGPVGLIMAPTREL 552
A+P+ + RD IG+A+TGSGKT AFVLPML +I PP++ +GP ++MAPTREL
Sbjct: 342 AAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTREL 401
Query: 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612
QQI + KFA +G R + GG + +Q ++ +G EIV+ TPGR+ID L +
Sbjct: 402 AQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLIDCL---ERRY 458
Query: 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQ-----NIRPD------------RQTVLFS 655
L + Y+V+DEADRM DMGFEPQ+ ++ N++P+ R T +FS
Sbjct: 459 AVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDEKKIYRTTYMFS 518
Query: 656 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG 715
AT P VE LARK L PV + +G I+Q V + ES++F RL +LL E EK
Sbjct: 519 ATMPPGVERLARKYLRNPVVVTIGTAGKTTDLISQHVIMMKESEKFFRLQKLLDELGEKT 578
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
I +FV++++ CD++ ++L K GY +LHG K Q RE ++ F++ N+L+AT V
Sbjct: 579 AI-VFVNTKKNCDSIAKNLDKAGYRVTTLHGGKSQEQREISLEGFRAKRYNVLVATDVVG 637
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RG+D+ ++ VIN+D P H E Y HR+GRTGRAG+ G A +F++ D + DL + L
Sbjct: 638 RGIDIPDVAHVINYDMPKHIEMYTHRIGRTGRAGKSGVATSFLTLHDTEVFYDLKQMLVQ 697
Query: 836 SEQVVPDDL 844
S VP +L
Sbjct: 698 SNSAVPPEL 706
Score = 40 (19.1 bits), Expect = 1.7e-84, Sum P(2) = 1.7e-84
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 341 DGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
D + ++ DR+ DRR +P + + +
Sbjct: 105 DRDRDRERERDRERDRRERDREPDRRNRE 133
>TAIR|locus:2222617 [details] [associations]
symbol:AT5G14610 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009664
"plant-type cell wall organization" evidence=RCA] [GO:0042545 "cell
wall modification" evidence=RCA] InterPro:IPR000629
InterPro:IPR001202 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00397 PROSITE:PS00039
PROSITE:PS01159 PROSITE:PS50020 PROSITE:PS51194 SMART:SM00456
SMART:SM00490 GO:GO:0005524 EMBL:CP002688 GO:GO:0003676
Gene3D:2.20.70.10 SUPFAM:SSF51045 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K12823 IPI:IPI00992350 RefSeq:NP_196965.2 UniGene:At.43560
ProteinModelPortal:F4K6V1 SMR:F4K6V1 PRIDE:F4K6V1
EnsemblPlants:AT5G14610.1 GeneID:831313 KEGG:ath:AT5G14610
OMA:YLIPGFM Uniprot:F4K6V1
Length = 712
Score = 794 (284.6 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 166/396 (41%), Positives = 247/396 (62%)
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
+ P PIQAQ+ P+ M RD + +AKTGSGKTL +++P H++ + + GP L++
Sbjct: 249 FSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQ-RIHNDSRMGPTILVL 307
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
+PTREL QI + KF K + C +YGG+ Q+ E++RG +IVV TPGR+ DIL
Sbjct: 308 SPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILE 367
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
K +L +V+YLV+DEADRM DMGFEPQI +IV + RQT++++AT+P++V +A
Sbjct: 368 M---KRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIA 424
Query: 667 RKVLNKPVEIQVGG--RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724
+L P ++ +G V NK ITQ +EV ++ RL ++L KI+IF ++
Sbjct: 425 ADLLVNPAQVNIGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTK 484
Query: 725 EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784
CD L R+L + + ++HG K Q +R+ ++ F+S +L+AT VAARGLDVK++
Sbjct: 485 RMCDQLARNLTRT-FGAAAIHGDKSQAERDDVLNQFRSGRTPVLVATDVAARGLDVKDIR 543
Query: 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
+V+N+D PN EDYVHR+GRTGRAG G A TF ++DAK++ DL+K LE + Q VP +
Sbjct: 544 VVVNYDFPNGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKHASDLIKILEGANQKVPPQV 603
Query: 845 KALADSFMAKVNQ----GLEQAHGTG----YGGSGF 872
+ +A +N+ G + G G YG SG+
Sbjct: 604 REMATRGGGGMNKFRRWGTPSSGGGGGRGGYGDSGY 639
Score = 61 (26.5 bits), Expect = 1.9e-83, Sum P(2) = 1.9e-83
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 441 MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIM 479
++PE AY ++ E+ + G VP P+ ++ TGL ++++
Sbjct: 138 LSPE---AYCRKHEITVSGGQVPPPLMSFEATGLPNELL 173
Score = 44 (20.5 bits), Expect = 1.2e-81, Sum P(2) = 1.2e-81
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 315 PLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRI 374
P F + +VLP ++ F+ + ++++ R K S K+LG +
Sbjct: 227 PAAGFNSYLVLPANGRM--VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYL 284
Query: 375 IPG 377
IPG
Sbjct: 285 IPG 287
>UNIPROTKB|F1SQ03 [details] [associations]
symbol:LOC100524536 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GLKSICI EMBL:CU927956 RefSeq:XP_003135023.1
ProteinModelPortal:F1SQ03 Ensembl:ENSSSCT00000013311
GeneID:100524536 Uniprot:F1SQ03
Length = 630
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 173/453 (38%), Positives = 281/453 (62%)
Query: 410 KAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGK-DV 462
KAE + D P KNFY+E K + M+ +V +RK+ +LK K +
Sbjct: 159 KAEVVEWEKRKWADLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPI 218
Query: 463 PKPIKTWHQT-GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
P PI + G ++M++I+K ++KP PIQ+QA P+++ G D IG+A+TG+GKTL++
Sbjct: 219 PNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSY 278
Query: 522 VLPMLRHIKDQPPVAAG--DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579
++P H+ QP V+ G +GP L++ PTREL Q+ ++ K++ G++ V +YGG
Sbjct: 279 LMPGFIHLNSQP-VSRGKRNGPGMLVLTPTRELALQVGAECSKYS-YKGLKSVCIYGGGN 336
Query: 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639
QI ++ +G +I++ TPGR+ D+ + NLR +TYLV+DEAD+M D+GFE QI
Sbjct: 337 RKGQIQDIMKGVDIIIATPGRLNDLQMNN---FVNLRSITYLVLDEADKMLDLGFEHQIM 393
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD-ITQLVEVRPES 698
+I+ ++RPDRQT++ SAT+P + LA L +P+ + VG +V D + Q + + E
Sbjct: 394 KILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEE 453
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
++ E L K K+++FV + D L DL G P SLHG ++Q+DRE +
Sbjct: 454 EKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALD 513
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818
DFK+ +LIAT +A+RGLDV ++ V N++ P + E+YVHRVGRTGRAG+ G ++T +
Sbjct: 514 DFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLM 573
Query: 819 SEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851
+++D K + +L++ L+ + Q +P+DL ++A+ +
Sbjct: 574 TQDDWKVAGELIEILQRANQSIPEDLLSMAEQY 606
>UNIPROTKB|I3LHW0 [details] [associations]
symbol:I3LHW0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 Ensembl:ENSSSCT00000032137 OMA:FESQIMK
Uniprot:I3LHW0
Length = 621
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 174/453 (38%), Positives = 283/453 (62%)
Query: 410 KAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGK-DV 462
KAE + + K D P KNFY+E K + M+ +V +RK+ +LK K +
Sbjct: 151 KAEVVEW-EKRKWDLPPIHKNFYVETKATSSMSQVQVDIWRKENFNVMCNDLKDGEKRPI 209
Query: 463 PKPIKTWHQT-GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
P PI + G ++M++I+K ++KP PIQ+QA P+++ G D IG+A+TG+GKTL++
Sbjct: 210 PNPICKFEDAFGPYPELMKSIKKAGFQKPTPIQSQAWPIVLQGIDLIGIAQTGTGKTLSY 269
Query: 522 VLPMLRHIKDQPPVAAG--DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579
++P H+ QP V+ G +GP L++ PTREL Q+ ++ K++ G++ V +YGG
Sbjct: 270 LMPGFIHLNSQP-VSRGKRNGPGMLVLTPTRELALQVGAECSKYS-YKGLKSVCIYGGGN 327
Query: 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639
QI ++ +G +I++ TPGR+ D+ + NLR +TYLV+DEAD+M D+GFE QI
Sbjct: 328 RKGQIQDIMKGVDIIIATPGRLNDLQMNN---FVNLRSITYLVLDEADKMLDLGFEHQIM 384
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD-ITQLVEVRPES 698
+I+ ++RPDRQT++ SAT+P + LA L +P+ + VG +V D + Q + + E
Sbjct: 385 KILLDVRPDRQTIMTSATWPDTIRQLAHSYLKEPMLVYVGTLDLVAVDTVKQNIIITTEE 444
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
++ E L K K+++FV + D L DL G P SLHG ++Q+DRE +
Sbjct: 445 EKRSLFQEFLQSLSPKDKVIVFVSRKLIADDLSSDLSIQGIPVQSLHGDREQSDRERALD 504
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818
DFK+ +LIAT +A+RGLDV ++ V N++ P + E+YVHRVGRTGRAG+ G ++T +
Sbjct: 505 DFKTGKVKILIATDLASRGLDVSDVTHVFNYNFPRNIEEYVHRVGRTGRAGKMGESVTLM 564
Query: 819 SEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851
+++D K + +L++ L+ + Q +P+DL ++A+ +
Sbjct: 565 TQDDWKVAGELIEILQRANQSIPEDLLSMAEQY 597
>UNIPROTKB|F1NQ09 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:AADN02002507 EMBL:AADN02002508
IPI:IPI00819782 ProteinModelPortal:F1NQ09
Ensembl:ENSGALT00000037063 Uniprot:F1NQ09
Length = 451
Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
Identities = 179/439 (40%), Positives = 268/439 (61%)
Query: 423 DYQPFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGKD-VPKPIKTWHQT-GL 474
D P KNFY E A M+PEEV +RK+ +LK K +P P+ +
Sbjct: 1 DLPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQ 60
Query: 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP- 533
IM IRK ++KP PIQ+QA P+I+ G D IG+A+TG+GKTLA+++P H+ QP
Sbjct: 61 YPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPI 120
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
P GP L++APTREL Q+ ++ K+ G + + +YGG QI+ + +G +I
Sbjct: 121 PKDKRGGPGMLVLAPTRELALQVEAECLKYT-YKGFKSICIYGGGDRKAQINVVTKGVDI 179
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
V+ TPGR+ D+ + NL+ +TYLV+DEADRM DMGFEPQI +I+ ++RPDRQTV+
Sbjct: 180 VIATPGRLNDLQMNN---FINLKSITYLVLDEADRMLDMGFEPQIMKILIDVRPDRQTVM 236
Query: 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL-RLLELLGEWY 712
SAT+P V LA+ L P+ + VG + + L ++ + D F + +++ + +
Sbjct: 237 MSATWPDGVRRLAKSYLRNPMIVYVGTLDLAVSGVV-LKYLQFDKDIFTWKYMQVNAQSF 295
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
+++FV D + DL G P SLHG ++Q DRE + DFK +L+AT
Sbjct: 296 CTDVVVVFVQLHVVADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVATD 355
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832
+A+RGLDV ++ V NFD P + E+YVHRVGRTGRAGR G A+T I+++D K + +L+
Sbjct: 356 LASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELIDI 415
Query: 833 LELSEQVVPDDLKALADSF 851
L+ ++QVVPD+L ++A+ +
Sbjct: 416 LQRAKQVVPDELISMAERY 434
>UNIPROTKB|F1NVJ6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322
SMART:SM00490 GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095174 OMA:VLDITHV
EMBL:AADN02002507 EMBL:AADN02002508 IPI:IPI00594090
Ensembl:ENSGALT00000025673 Uniprot:F1NVJ6
Length = 642
Score = 827 (296.2 bits), Expect = 1.7e-82, P = 1.7e-82
Identities = 183/440 (41%), Positives = 266/440 (60%)
Query: 423 DYQPFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGKD-VPKPIKTWHQT-GL 474
D P KNFY E A M+PEEV +RK+ +LK K +P P+ +
Sbjct: 188 DLPPIEKNFYKESSRTACMSPEEVELWRKENNNIICDDLKEGEKRCIPNPVCKFEDVFEQ 247
Query: 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP- 533
IM IRK ++KP PIQ+QA P+I+ G D IG+A+TG+GKTLA+++P H+ QP
Sbjct: 248 YPDIMANIRKTGFQKPTPIQSQAWPIILQGIDLIGIAQTGTGKTLAYLMPGFIHLASQPI 307
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
P GP L++APTREL Q+ ++ K+ G + + +YGG QI+ + +G +I
Sbjct: 308 PKDKRGGPGMLVLAPTRELALQVEAECLKYT-YKGFKSICIYGGGDRKAQINVVTKGVDI 366
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
V+ TPGR+ D+ + NL+ +TYL +EADRM DMGFEPQI +I+ ++RPDRQTV+
Sbjct: 367 VIATPGRLNDLQMNN---FINLKSITYLA-NEADRMLDMGFEPQIMKILIDVRPDRQTVM 422
Query: 654 FSATFPRQVEILARKVLNKPVEIQVG--GRSVVNKDITQLVEVRPESDRFLRLLELLGEW 711
SAT+P V LA+ L P+ + VG + VN + Q V V E ++ + +
Sbjct: 423 MSATWPDGVRRLAKSYLRNPMIVYVGTLDLAAVNT-VEQKVIVINEEEKKAFMENFIDSM 481
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
K K +IFV + D + DL G P SLHG ++Q DRE + DFK +L+AT
Sbjct: 482 KPKDKAIIFVGKKSTADDIASDLGVQGVPVQSLHGDREQCDREQALDDFKKGKVRILVAT 541
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831
+A+RGLDV ++ V NFD P + E+YVHRVGRTGRAGR G A+T I+++D K + +L+
Sbjct: 542 DLASRGLDVHDITHVFNFDFPRNIEEYVHRVGRTGRAGRTGKAVTLITKKDWKAASELID 601
Query: 832 ALELSEQVVPDDLKALADSF 851
L+ ++QVVPD+L ++A+ +
Sbjct: 602 ILQRAKQVVPDELISMAERY 621
>UNIPROTKB|Q9NXZ2 [details] [associations]
symbol:DDX43 "Probable ATP-dependent RNA helicase DDX43"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 EMBL:AJ278110 EMBL:AL136751 EMBL:BC066938
IPI:IPI00032899 RefSeq:NP_061135.2 UniGene:Hs.125507
ProteinModelPortal:Q9NXZ2 SMR:Q9NXZ2 STRING:Q9NXZ2
PhosphoSite:Q9NXZ2 DMDM:145559466 PRIDE:Q9NXZ2 DNASU:55510
Ensembl:ENST00000370336 GeneID:55510 KEGG:hsa:55510 UCSC:uc003pgw.3
CTD:55510 GeneCards:GC06P074161 HGNC:HGNC:18677 HPA:HPA031380
HPA:HPA031381 MIM:606286 neXtProt:NX_Q9NXZ2 PharmGKB:PA134988734
InParanoid:Q9NXZ2 OMA:VLDITHV OrthoDB:EOG43BMNQ PhylomeDB:Q9NXZ2
ChiTaRS:DDX43 GenomeRNAi:55510 NextBio:59918 ArrayExpress:Q9NXZ2
Bgee:Q9NXZ2 CleanEx:HS_DDX43 Genevestigator:Q9NXZ2
GermOnline:ENSG00000080007 Uniprot:Q9NXZ2
Length = 648
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 174/441 (39%), Positives = 268/441 (60%)
Query: 423 DYQPFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGK-DVPKPIKTWHQT-GL 474
D P +KNFY E + M+ E ++RK+ +LK K +P P T+
Sbjct: 190 DLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQC 249
Query: 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534
++ME I+K ++KP PIQ+QA P+++ G D IGVA+TG+GKTL +++P H+ QP
Sbjct: 250 YPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPS 309
Query: 535 VAAGDGPVG-LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
+ G L++ PTREL Q+ + K++ G+R V VYGG +QI ELK+G +I
Sbjct: 310 LKGQRNRPGMLVLTPTRELALQVEGECCKYS-YKGLRSVCVYGGGNRDEQIEELKKGVDI 368
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
++ TPGR+ D+ ++ NL+ +TYLV+DEAD+M DMGFEPQI +I+ ++RPDRQTV+
Sbjct: 369 IIATPGRLNDLQMSN---FVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVM 425
Query: 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRFLRLLELLGEWY 712
SAT+P V LA+ L +P+ + VG +V + Q + V E +++ + L
Sbjct: 426 TSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMS 485
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
K+++FV + D L DL+ SLHG ++Q DRE + +FK+ +LIAT
Sbjct: 486 STDKVIVFVSRKAVADHLSSDLILGNISVESLHGDREQRDREKALENFKTGKVRILIATD 545
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832
+A+RGLDV ++ V NFD P + E+YVHR+GRTGRAGR G +IT ++ D + + +L+
Sbjct: 546 LASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINI 605
Query: 833 LELSEQVVPDDLKALADSFMA 853
LE + Q +P++L ++A+ F A
Sbjct: 606 LERANQSIPEELVSMAERFKA 626
>UNIPROTKB|G3MYF0 [details] [associations]
symbol:LOC100300937 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:GLKSICI EMBL:DAAA02074437
Ensembl:ENSBTAT00000065115 Uniprot:G3MYF0
Length = 608
Score = 820 (293.7 bits), Expect = 9.4e-82, P = 9.4e-82
Identities = 177/472 (37%), Positives = 285/472 (60%)
Query: 413 KLSIVDHSK---IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQ-LELKI----HG--KDV 462
K +V+ K D P +KN YIE K ++ +V +RK+ ++ G + +
Sbjct: 136 KAGVVEWKKRKWADLPPIKKNLYIESKATHSLSEAQVEIWRKENFNIRCDDLTEGEKRPI 195
Query: 463 PKPIKTWHQTGLT-SKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
PKP T+ +IM++IR+ ++KP PIQ+Q+ P+I+ G D IG+A+TG+GKTL++
Sbjct: 196 PKPTCTFEDAFQQYPEIMQSIRRAGFQKPTPIQSQSWPIILQGIDLIGIAQTGTGKTLSY 255
Query: 522 VLPMLRHIKDQPPVAAG-DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580
++P HI QP +GP L++ PTREL Q+ ++ K+ G++ V +YGG
Sbjct: 256 LMPGFIHIHSQPVSRKQRNGPGMLVLTPTRELALQVEAECSKYL-YKGLKSVCIYGGGNR 314
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640
QI ++ +G +I++ TPGR+ D+ + NLR +TYLV+DEAD+M D+GFE QI +
Sbjct: 315 KGQIQDVTKGVDIIIATPGRLNDLQMNN---FVNLRSITYLVLDEADKMLDLGFEHQIMK 371
Query: 641 IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD-ITQLVEVRPESD 699
I+ ++RPDRQTV+ +A++P LA+ L +P+ + VG +V + + Q + V E +
Sbjct: 372 ILLDVRPDRQTVMTTASWPDSTRRLAQSYLKQPMIVYVGTLDLVTVNTVKQNIIVTTEEE 431
Query: 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759
+ + E L K K+++FV + D L DL G P SLHG ++Q+DR+ + D
Sbjct: 432 KRSLVKEFLQSLSPKDKVIVFVSRKLVADDLSSDLSIQGIPVQSLHGDREQSDRDQALED 491
Query: 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819
F++ +LIAT +AARGLDV ++ V N++ P + E+YVHRVGRTGRAG+ G +IT ++
Sbjct: 492 FRTGRVKILIATDLAARGLDVSDVTHVYNYNFPRNIEEYVHRVGRTGRAGKIGESITLVT 551
Query: 820 EEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSG 871
++D K + +L+K L+ + Q+VP L+++AD F K ++ Q H SG
Sbjct: 552 QDDWKIADELIKILQRANQIVPPSLRSMADRFK-KQHKQKNQPHSNQERTSG 602
>UNIPROTKB|E1BII7 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:DAAA02025231 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 EMBL:DAAA02025227 EMBL:DAAA02025228
EMBL:DAAA02025229 EMBL:DAAA02025230 IPI:IPI00712097
Ensembl:ENSBTAT00000029077 OMA:ANQNIPE Uniprot:E1BII7
Length = 647
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 180/454 (39%), Positives = 275/454 (60%)
Query: 426 PFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGK-DVPKPIKTWHQT-GLTSK 477
P +KNFYIE ++ + M+ E+V +RK+ +LK K +P P + +
Sbjct: 192 PVKKNFYIESEKTSSMSQEQVDNWRKENYNIICDDLKDGEKRPLPNPTCNFEDAFHCYPE 251
Query: 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA- 536
+M I K ++KP PIQ+QA P+I+ G D IGVA+TG+GKTL++++P HI QP +
Sbjct: 252 VMRNIEKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHIDSQPVLQR 311
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVC 596
A +GP L++ PTREL Q+ ++ +++ G++ V +YGG QI +L +G +I++
Sbjct: 312 ARNGPGMLVLTPTRELALQVDAECSEYS-YRGLKSVCIYGGGDRDGQIKDLSKGADIIIA 370
Query: 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656
TPGR+ D+ + L+ +TYLV+DEAD+M DMGFEPQI +I+ ++RPDRQTV+ SA
Sbjct: 371 TPGRLHDLQMNN---FVYLKSITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSA 427
Query: 657 TFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRFLRLLELLGEWYEKG 715
T+P V LA+ L +P+ + VG +V +TQ + V E ++ + + K
Sbjct: 428 TWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVTQNIIVTTEDEKRSHIQAFIDSMSPKD 487
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
K++IFV + D L DL SLHG ++Q+DRE + FK+ +LIAT +A+
Sbjct: 488 KVIIFVSRKAVADHLSSDLGIRRISVESLHGNREQSDRERALKSFKTGKVRILIATDLAS 547
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RGLDV ++ V N+D P + E+YVHRVGRTGRAGR G +IT I+ D K + +L+ LE
Sbjct: 548 RGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRNDWKIAGELINILER 607
Query: 836 SEQVVPDDLKALADSFMA-KVNQGLEQAHGTGYG 868
+ Q VP+DL ++A+ + A K+ + E G G
Sbjct: 608 ANQSVPEDLVSMAERYKANKLKKETENKWGRPQG 641
>ZFIN|ZDB-GENE-980526-150 [details] [associations]
symbol:pl10 "pl10" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-980526-150 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K11594 HOVERGEN:HBG015893
EMBL:BC059794 IPI:IPI00483337 RefSeq:NP_571016.2 UniGene:Dr.75779
ProteinModelPortal:Q6PBB2 SMR:Q6PBB2 GeneID:30116 KEGG:dre:30116
CTD:30116 InParanoid:Q6PBB2 NextBio:20806595 ArrayExpress:Q6PBB2
Uniprot:Q6PBB2
Length = 688
Score = 679 (244.1 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 149/341 (43%), Positives = 217/341 (63%)
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPG 599
P+ L++APTREL QI+ + RKF+ VR CV VYGG+ + QQI +L+RG ++V TPG
Sbjct: 299 PISLVLAPTRELALQIYDEARKFSYRSHVRPCV-VYGGADIGQQIRDLERGCHLLVATPG 357
Query: 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV-QNIRPD---RQTVLFS 655
R++D++ GKI L YLV+DEADRM DMGFEPQI RIV Q+ P RQT++FS
Sbjct: 358 RLLDMM--ERGKI-GLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGLRQTMMFS 414
Query: 656 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG 715
ATFP++++ILAR L + + VG +++ITQ V E+D+ LL+LL +
Sbjct: 415 ATFPKEIQILARDFLEDYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDS 474
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
L+FV +++ DAL L + GY C S+HG + Q DRE + F+S C +L+AT+VAA
Sbjct: 475 LTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPILVATAVAA 534
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RGLD+ ++ VINFD P+ E+YVHR+GRTGR G G A +F ++++ + DL+ L
Sbjct: 535 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNGNITKDLLDILVE 594
Query: 836 SEQVVPDDLKALADSFMAKVN-QGLEQAHGTGYGGSGFKFN 875
++Q VP L++LA K + +G + G+G ++ N
Sbjct: 595 AKQEVPSWLESLAYEHQHKSSSRGRSKRFSGGFGARDYRQN 635
Score = 156 (60.0 bits), Expect = 2.5e-81, Sum P(2) = 2.5e-81
Identities = 32/76 (42%), Positives = 44/76 (57%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P+PI +H + IM I Y +P P+Q A+P+I S RD + A+TGSGKT
Sbjct: 200 GHNGPQPIDRFHDLEMGEIIMGNINLSRYTRPTPVQKHAIPIIKSKRDLMACAQTGSGKT 259
Query: 519 LAFVLPMLRHIKDQPP 534
AF+LP+L I P
Sbjct: 260 AAFLLPVLSQIYTDGP 275
>GENEDB_PFALCIPARUM|PFL1310c [details] [associations]
symbol:PFL1310c "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0016070 "RNA
metabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014188 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
HOGENOM:HOG000268804 KO:K12823 RefSeq:XP_001350668.1
ProteinModelPortal:Q8I5E7 PRIDE:Q8I5E7
EnsemblProtists:PFL1310c:mRNA GeneID:811314 KEGG:pfa:PFL1310c
EuPathDB:PlasmoDB:PF3D7_1227100 ProtClustDB:CLSZ2500975
Uniprot:Q8I5E7
Length = 742
Score = 666 (239.5 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 138/315 (43%), Positives = 203/315 (64%)
Query: 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI 602
GLI+ PTREL Q+ +I+ F K + ++ V VYGG QI+ LK+G +I+V TPGR++
Sbjct: 430 GLILLPTRELCLQVLDEIKSFEKNLPIKSVAVYGGVPKYYQINNLKKGADIIVATPGRLL 489
Query: 603 DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662
D L G I NL + Y+V+DEADR+ DMGFE Q+ +I+ + ++Q + +AT+P QV
Sbjct: 490 DFL--ENGNI-NLLKCIYVVIDEADRLLDMGFEKQLRKIMTQVNKNKQLLFLTATWPEQV 546
Query: 663 EILARKVLN-KPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIF 720
LA + PV+IQ+G + NK+I Q V + D +LL+ L E YE KILIF
Sbjct: 547 RKLAYDFCSYDPVKIQIGKNELTANKNIEQNVIISSSIDMKKKLLDWLKENYENNKILIF 606
Query: 721 VHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780
++ CD L ++L H Y LS+HG K Q +R+ ++++K++ CN+L+AT VA+RGLD+
Sbjct: 607 CDTKRNCDNLCKELRYHQYNALSIHGDKQQRERDRILNNYKTDRCNILVATDVASRGLDI 666
Query: 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS-----EEDAKYSPDLVKALEL 835
K + +VIN+D PN EDY+HR+GRTGRAG+KG +I F S + K++ +L+K L
Sbjct: 667 KNISVVINYDIPNTIEDYIHRIGRTGRAGKKGKSILFFSYDYYMPQKLKFAKELIKLLNK 726
Query: 836 SEQVVPDDLKALADS 850
+ Q VP LK +A S
Sbjct: 727 TNQTVPPQLKEIAYS 741
Score = 129 (50.5 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
+ +P IQ P+ +SG+D IGVA+TGSGKTLAFVLP HI
Sbjct: 307 FSEPTAIQKITWPIALSGKDLIGVAETGSGKTLAFVLPCFMHI 349
Score = 37 (18.1 bits), Expect = 1.2e-79, Sum P(3) = 1.2e-79
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 413 KLSIVDHSKIDYQPFRKNFYI 433
KL+ ++ K DY NF++
Sbjct: 7 KLTSINCKKNDYVSLSNNFFL 27
>ASPGD|ASPL0000077157 [details] [associations]
symbol:AN10557 species:162425 "Emericella nidulans"
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:0002183 "cytoplasmic translational initiation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
[GO:0010628 "positive regulation of gene expression" evidence=IEA]
[GO:0097308 "cellular response to farnesol" evidence=IEP]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:BN001303 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:GNWANAN EMBL:AACD01000077 ProteinModelPortal:C8V8H4 SMR:C8V8H4
PRIDE:C8V8H4 EnsemblFungi:CADANIAT00005985 Uniprot:C8V8H4
Length = 668
Score = 775 (277.9 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 177/437 (40%), Positives = 258/437 (59%)
Query: 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAK 512
+ ++ G DVP+P+ T+ L ++ I Y+ P P+Q ++P++M+GRD + A+
Sbjct: 172 IPVEASGHDVPEPVNTFTNPPLDDHLISNIALARYQTPTPVQKYSIPIVMNGRDLMACAQ 231
Query: 513 TGSGKTLAFVLPMLRHIKDQ-----PPVAAGD-G------PVGLIMAPTRELVQQIHSDI 560
TGSGKT F+ P+L PP AAG G P LI+APTRELV QI +
Sbjct: 232 TGSGKTGGFLFPILSQAYQNGPAAPPPSAAGQFGRQRKAYPTSLILAPTRELVSQIFDEA 291
Query: 561 RKFAKVMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619
RKFA VR CV VYGG+ + Q+ +++RG +++V TPGR++D++ G+I+ L +
Sbjct: 292 RKFAYRSWVRPCV-VYGGADIGSQLRQIERGCDLLVATPGRLVDLI--ERGRIS-LVNIK 347
Query: 620 YLVMDEADRMFDMGFEPQITRIVQ-----NIRPDRQTVLFSATFPRQVEILARKVLNKPV 674
YL++DEADRM DMGFEPQI RIV+ N+ DRQT++FSATFPR +++LAR L V
Sbjct: 348 YLILDEADRMLDMGFEPQIRRIVEGEDMPNVN-DRQTLMFSATFPRDIQMLARDFLKDYV 406
Query: 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL 734
+ VG +++ITQ VE + D+ LL++L G LIFV ++ DAL L
Sbjct: 407 FLSVGRVGSTSENITQKVEYVEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFL 466
Query: 735 LKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNH 794
+ +P ++HG + Q +RE + F+S +L+AT+VAARGLD+ + VIN+D P
Sbjct: 467 INQRFPATAIHGDRTQRERERALEMFRSGRYPILVATAVAARGLDIPNVTHVINYDLPTD 526
Query: 795 YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAK 854
+DYVHR+GRTGRAG G A F + + DL+ L+ + Q VP L+++A
Sbjct: 527 IDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRDLIDLLKEAHQEVPSFLESIA------ 580
Query: 855 VNQGLEQAHGTGYGGSG 871
G+GYGG G
Sbjct: 581 -------REGSGYGGRG 590
Score = 40 (19.1 bits), Expect = 3.2e-79, Sum P(2) = 3.2e-79
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 863 HGTGYGGSGF 872
+G GYGG G+
Sbjct: 646 YGGGYGGGGY 655
>UNIPROTKB|F1S0I6 [details] [associations]
symbol:DDX43 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR011545 Pfam:PF00013 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50084 PROSITE:PS51194
SMART:SM00322 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0005622 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095174 OMA:VLDITHV EMBL:CU468562
EMBL:AEMK01095428 EMBL:AEMK01188208 EMBL:FP312832
Ensembl:ENSSSCT00000004740 Uniprot:F1S0I6
Length = 650
Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
Identities = 179/456 (39%), Positives = 277/456 (60%)
Query: 428 RKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGK-DVPKPIKTWHQT-GLTSKIM 479
+KNFY+E + + M+ E+V +RK+ +LK K +P P + ++M
Sbjct: 194 KKNFYMESEITSSMSQEQVQNWRKENYNIMCDDLKDGEKRPIPNPACKFEDAFQCYPEVM 253
Query: 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV---- 535
I+K ++KP PIQ+QA P+I+ G D IGVA+TG+GKTL++++P H+ QP V
Sbjct: 254 INIKKAGFQKPTPIQSQAWPIILQGIDLIGVAQTGTGKTLSYLMPGFIHVDSQPVVFSLQ 313
Query: 536 AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVV 595
A +GP L++ PTREL Q+ ++ K++ G++ V VYGG QI +L +G +I++
Sbjct: 314 RARNGPGMLVLTPTRELALQVEAECSKYS-YKGLKSVCVYGGGDRDGQIKDLLKGVDIII 372
Query: 596 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655
TPGR+ D+ + L+ ++YLV+DEAD+M DMGFEPQI +I+ +IRPDRQTV+ S
Sbjct: 373 ATPGRLNDLQMNN---FVYLKSISYLVLDEADKMLDMGFEPQIMKILLDIRPDRQTVMTS 429
Query: 656 ATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRFLRLLELLGEWYEK 714
AT+P V LA+ L +P+ + VG +V + Q + V E ++ + + K
Sbjct: 430 ATWPYAVRRLAQSYLKEPMIVYVGTLDLVAVSTVKQNIIVTTEDEKRSHIQTFIESMSPK 489
Query: 715 GKILIFVHSQEKCDALFRDL-LKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773
K++IFV + D L DL ++H SLHG ++Q DRE + +FK+ +LIAT +
Sbjct: 490 DKVIIFVSRKAVADHLSSDLGIRH-ISVESLHGNREQGDRERALKNFKTGKVRILIATDL 548
Query: 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833
A+RGLDV ++ V N+D P + E+YVHRVGRTGRAGR G +IT I+ D K + +L+ L
Sbjct: 549 ASRGLDVHDVTHVYNYDFPRNIEEYVHRVGRTGRAGRTGVSITLITRSDWKIAGELIHIL 608
Query: 834 ELSEQVVPDDLKALADSFMA-KVNQGLEQAHGTGYG 868
E + Q +P+DL +A+ + A K+ + +E+ G G
Sbjct: 609 ERANQSIPEDLVEMAERYKANKLKKEMEKKLGRPQG 644
>TAIR|locus:2034481 [details] [associations]
symbol:STRS1 "STRESS RESPONSE SUPPRESSOR 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0001510
"RNA methylation" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005730
EMBL:AC079041 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811
OMA:DRILVFC EMBL:AC074309 EMBL:AY080680 EMBL:AY117298 EMBL:AJ010458
IPI:IPI00547293 PIR:A86444 PIR:T51739 RefSeq:NP_174479.1
UniGene:At.20258 ProteinModelPortal:Q9C551 SMR:Q9C551 STRING:Q9C551
PaxDb:Q9C551 PRIDE:Q9C551 EnsemblPlants:AT1G31970.1 GeneID:840087
KEGG:ath:AT1G31970 GeneFarm:911 TAIR:At1g31970 InParanoid:Q9C551
PhylomeDB:Q9C551 ProtClustDB:CLSN2682598 Genevestigator:Q9C551
GermOnline:AT1G31970 Uniprot:Q9C551
Length = 537
Score = 746 (267.7 bits), Expect = 1.0e-78, Sum P(3) = 1.0e-78
Identities = 170/448 (37%), Positives = 270/448 (60%)
Query: 429 KNFYIEVKEIARMTPEEVS-AYRKQLELKIHGKDVPKP----IKTWHQTGLTSKIMETIR 483
KN +V E ++ E++ +Q ++ + GK V + +KT+ ++ L +++ +
Sbjct: 74 KNKKKDVPE-KKLEAEDLGEGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCK 132
Query: 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI-KDQPPVAAGD--- 539
+EKP PIQ+ P ++ GRD IG+AKTGSGKTLAF +P + H+ K + G
Sbjct: 133 --TFEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPAIMHVLKKNKKIGGGSKKV 190
Query: 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPG 599
P L+++PTREL QI +R+ + G++ + VYGGS QIS ++ G +IV+ TPG
Sbjct: 191 NPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPG 250
Query: 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659
R+ D++ ++ + L V+++V+DEADRM DMGFE + I+ N RQ V+FSAT+P
Sbjct: 251 RLRDLIESN---VLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWP 307
Query: 660 RQVEILARKVLN-KPVEIQVGGRSVV-NKDITQLVEVRPESDRFLRLLELLGEWY--EKG 715
V LA++ ++ P+++ +G + N D+ Q++EV E R RL+ LL +++ +K
Sbjct: 308 LDVHKLAQEFMDPNPIKVIIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKN 367
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
++L+F + + + L R L + G+ +S+HG K Q++R ++S FK C LL+AT VAA
Sbjct: 368 RVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEGSCPLLVATDVAA 427
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RGLD+ ++E+VIN+ P EDYVHR+GRTGRAG+KG A TF + + + +LV L
Sbjct: 428 RGLDIPDVEVVINYTFPLTTEDYVHRIGRTGRAGKKGVAHTFFTPLNKGLAGELVNVLRE 487
Query: 836 SEQVVPDDLKALADSFMAKVNQGLEQAH 863
+ QVVP DL + + K L AH
Sbjct: 488 AGQVVPADLLKFG-THVKKKESKLYGAH 514
Score = 39 (18.8 bits), Expect = 1.0e-78, Sum P(3) = 1.0e-78
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 327 EVEKLKNTVEPSFTDG-NNVESKKMDRKGDRRSNGEQPKKSSNKSL 371
EVE++ V + +N E KK ++ ++ S + K K L
Sbjct: 40 EVEEVPQEVTNGVEEELSNKEKKKKRKREEKESEKNKKKDVPEKKL 85
Score = 38 (18.4 bits), Expect = 1.0e-78, Sum P(3) = 1.0e-78
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 167 SRSNRHRDENDE 178
S+ N+H +EN E
Sbjct: 29 SKKNKHTEENHE 40
>TAIR|locus:2076436 [details] [associations]
symbol:AT3G58570 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL137082 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 OMA:KYERGGN EMBL:AY049285
EMBL:BT002731 EMBL:AY088132 IPI:IPI00518094 PIR:T45677
RefSeq:NP_191416.1 UniGene:At.831 ProteinModelPortal:Q9M2F9
SMR:Q9M2F9 STRING:Q9M2F9 PaxDb:Q9M2F9 PRIDE:Q9M2F9
EnsemblPlants:AT3G58570.1 GeneID:825026 KEGG:ath:AT3G58570
GeneFarm:1031 TAIR:At3g58570 InParanoid:Q9M2F9 PhylomeDB:Q9M2F9
ProtClustDB:CLSN2915471 Genevestigator:Q9M2F9 GermOnline:AT3G58570
Uniprot:Q9M2F9
Length = 646
Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
Identities = 178/441 (40%), Positives = 261/441 (59%)
Query: 448 AYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDC 507
AY + + ++ G +VP P+ T+ + L + I++ Y KP P+Q A+P++ +GRD
Sbjct: 128 AY-EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDL 186
Query: 508 IGVAKTGSGKTLAFVLPMLRHI-KDQ----PPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562
+ A+TGSGKT AF P++ I KDQ P G P+ +I++PTREL QIH + RK
Sbjct: 187 MACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARK 246
Query: 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622
F+ GV+ V YGG+ V QQI EL+RG +I+V TPGR+ D+L G+++ L+ V +L
Sbjct: 247 FSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLL--ERGRVS-LQMVRFLA 303
Query: 623 MDEADRMFDMGFEPQITRIVQNI-RPD---RQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+DEADRM DMGFEPQI +IVQ + P RQT+LFSATFPR+++ LA L+ + + V
Sbjct: 304 LDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAV 363
Query: 679 GGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK------ILIFVHSQEKCDALFR 732
G I Q VE +SD+ L++LL E G L+FV +++ D+L
Sbjct: 364 GRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLEN 423
Query: 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP 792
L +G+P ++HG + Q +RE + FK+ +L+AT VAARGLD+ + V+NFD P
Sbjct: 424 WLCINGFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLP 483
Query: 793 NHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM 852
N +DYVHR+GRTGRAG G A F ++ + + L + ++ + Q VPD L A
Sbjct: 484 NDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYASR-- 541
Query: 853 AKVNQGLEQAHGTGYGGSGFK 873
A G + G +GG F+
Sbjct: 542 ASFGGGKNRRSGGRFGGRDFR 562
>MGI|MGI:1349406 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
Y-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1349406 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 OrthoDB:EOG47D9FV
CTD:8653 EMBL:AJ007376 EMBL:BC021453 EMBL:L25337 IPI:IPI00134371
RefSeq:NP_036138.1 UniGene:Mm.486436 ProteinModelPortal:Q62095
SMR:Q62095 STRING:Q62095 PhosphoSite:Q62095 PaxDb:Q62095
PRIDE:Q62095 Ensembl:ENSMUST00000091190 GeneID:26900 KEGG:mmu:26900
InParanoid:Q62095 NextBio:304749 Bgee:Q62095 Genevestigator:Q62095
GermOnline:ENSMUSG00000069045 Uniprot:Q62095
Length = 658
Score = 738 (264.8 bits), Expect = 7.1e-78, Sum P(3) = 7.1e-78
Identities = 174/435 (40%), Positives = 258/435 (59%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+ + + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 171 GNNCPPHIENFSDIEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 230
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 231 AAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 290
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 291 RSRVRPCV-VYGGADTVQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 346
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740
+++ITQ V E D+ LL+LL + L+FV +++ D+L L + Y
Sbjct: 407 VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENFLFQERYA 466
Query: 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YVH
Sbjct: 467 CTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 526
Query: 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAK-VNQGL 859
R+GRTGR G G A +F +E + + DL+ L ++Q VP L+++A K ++G
Sbjct: 527 RIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHHYKGSSRGR 586
Query: 860 EQAHGTG-YGGSGFK 873
++ +G +G ++
Sbjct: 587 SKSRFSGGFGARDYR 601
Score = 39 (18.8 bits), Expect = 7.1e-78, Sum P(3) = 7.1e-78
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 849 DSFMAKVNQGLEQAHGTGYGGSGF 872
+S A ++ +H G+GG G+
Sbjct: 612 NSNRANSSRSSGSSHNRGFGGGGY 635
Score = 38 (18.4 bits), Expect = 7.1e-78, Sum P(3) = 7.1e-78
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 246 KAGRN-WTLDREDSDDEEVPQTGKSETDMDADEEPKPSEN-QVGDAMLVDSDGGSAAPAL 303
++G + W+ DR D DD P + + N + D + V++ G + P +
Sbjct: 120 RSGHSRWS-DRSDEDDWSKPLPPSERLEQELFSGGNTGINFEKYDDIPVEATGNNCPPHI 178
Query: 304 Q 304
+
Sbjct: 179 E 179
>TAIR|locus:2076351 [details] [associations]
symbol:AT3G58510 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005777 "peroxisome"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730
GO:GO:0005777 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL137082 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804 KO:K11594
EMBL:AY088091 EMBL:AY062446 EMBL:AY114637 EMBL:AJ010463
IPI:IPI00521485 PIR:T45671 PIR:T51742 RefSeq:NP_001030884.1
RefSeq:NP_567067.1 RefSeq:NP_974455.1 UniGene:At.22801
UniGene:At.70259 ProteinModelPortal:Q8LA13 SMR:Q8LA13 IntAct:Q8LA13
STRING:Q8LA13 PaxDb:Q8LA13 PRIDE:Q8LA13 EnsemblPlants:AT3G58510.1
EnsemblPlants:AT3G58510.2 EnsemblPlants:AT3G58510.3 GeneID:825020
KEGG:ath:AT3G58510 GeneFarm:927 TAIR:At3g58510 InParanoid:Q8LA13
OMA:FCAPDEA PhylomeDB:Q8LA13 ProtClustDB:CLSN2683925
Genevestigator:Q8LA13 GermOnline:AT3G58510 Uniprot:Q8LA13
Length = 612
Score = 762 (273.3 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 178/470 (37%), Positives = 272/470 (57%)
Query: 418 DHSKIDYQPFRKNFYIE-VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTS 476
D + + PF + +E V T AY + + ++ G DVP P+ T+ L
Sbjct: 102 DRREREVNPFGDDAELEPVFTEQENTGINFDAY-EDIPVETSGGDVPPPVNTFADIDLGD 160
Query: 477 KIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI-KDQ--- 532
+ IR+ Y +P P+Q A+P++++ RD + A+TGSGKT AF P++ I KDQ
Sbjct: 161 ALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPIISGIMKDQHVE 220
Query: 533 -PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
P + P +I++PTREL QIH + +KF+ GV+ V YGG+ + QQ+ EL+RG
Sbjct: 221 RPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGC 280
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI----RP 647
+I+V TPGR+ D+L +++ ++ + +L +DEADRM DMGFEPQI +IV+ + R
Sbjct: 281 DILVATPGRLNDLL--ERARVS-MQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRG 337
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707
RQT+LFSATFP Q++ LA ++ + + VG ITQ VE ESD+ L++L
Sbjct: 338 VRQTMLFSATFPSQIQRLAADFMSNYIFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDL 397
Query: 708 LG---EWYEKGKI-LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L E +K + L+FV ++ D L L + +P S+HG + Q +RE + FK+
Sbjct: 398 LHAQRETQDKQSLTLVFVETKRGADTLENWLCMNEFPATSIHGDRTQQEREVALRSFKTG 457
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+L+AT VAARGLD+ + V+NFD PN +DYVHR+GRTGRAG+ G A F +E +A
Sbjct: 458 RTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNA 517
Query: 824 KYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFK 873
+ + L + ++ + Q VP+ L A A G +++ G +GG F+
Sbjct: 518 QLARSLAELMQEANQEVPEWLTRYASR--ASFGGGKKRSGGR-FGGRDFR 564
Score = 39 (18.8 bits), Expect = 9.5e-78, Sum P(2) = 9.5e-78
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 858 GLEQAHGTGYGGSGF 872
G + G GYGG G+
Sbjct: 581 GSDYYGGGGYGGGGY 595
>TAIR|locus:2176192 [details] [associations]
symbol:AT5G51280 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0000741 "karyogamy"
evidence=RCA] [GO:0009560 "embryo sac egg cell differentiation"
evidence=RCA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AB023044 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K13116
OMA:DICRYLC HOGENOM:HOG000268792 EMBL:AK226380 IPI:IPI00530020
RefSeq:NP_199941.1 UniGene:At.29686 ProteinModelPortal:Q9LU46
SMR:Q9LU46 PaxDb:Q9LU46 PRIDE:Q9LU46 DNASU:835202
EnsemblPlants:AT5G51280.1 GeneID:835202 KEGG:ath:AT5G51280
GeneFarm:1011 TAIR:At5g51280 InParanoid:Q9LU46 PhylomeDB:Q9LU46
ProtClustDB:CLSN2685494 Genevestigator:Q9LU46 GermOnline:AT5G51280
Uniprot:Q9LU46
Length = 591
Score = 782 (280.3 bits), Expect = 1.0e-77, P = 1.0e-77
Identities = 174/448 (38%), Positives = 263/448 (58%)
Query: 438 IARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQA 497
I +M+ ++ RKQ + ++G D+P PIK + +++T+++ +P PIQ Q
Sbjct: 117 IRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQG 176
Query: 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPMLR-HIKDQP--PVAAGDGPVGLIMAPTRELVQ 554
LPVI++GRD IG+A TGSGKTL FVLPM+ ++++ P+AAG+GP+GLI+ P+REL +
Sbjct: 177 LPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELAR 236
Query: 555 QIHSDIRKFAKVM---G---VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
Q + + +F + G +R + GG + Q+ +KRG IVV TPGR+ D+L
Sbjct: 237 QTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVATPGRLKDMLAK- 295
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668
K +L YL +DEADR+ D+GFE I + + + RQT+LFSAT P +++I AR
Sbjct: 296 --KKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARS 353
Query: 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCD 728
L KPV + VG N D+ Q VE + + + LLE L + +LIF ++ D
Sbjct: 354 ALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TSPPVLIFCENKADVD 411
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
+ LL G +++HG KDQ DRE IS FK+ ++L+AT VA++GLD +++ VIN
Sbjct: 412 DIHEYLLLKGVEAVAIHGGKDQEDREYAISSFKAGKKDVLVATDVASKGLDFPDIQHVIN 471
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP-DLVKALELSEQVVPDDLKAL 847
+D P E+YVHR+GRTGR G+ G A TFI++ ++ + DL L+ ++Q +P L L
Sbjct: 472 YDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAEL 531
Query: 848 ADSFM-AKVNQGLEQAHGTGY-GGSGFK 873
D A+ G Y GG G +
Sbjct: 532 NDPMEEAETIANASGVKGCAYCGGLGHR 559
>DICTYBASE|DDB_G0287361 [details] [associations]
symbol:ddx41 "DEAD box protein abstrakt"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 dictyBase:DDB_G0287361
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GenomeReviews:CM000154_GR GO:GO:0003723 GO:GO:0006396
EMBL:AAFI02000100 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HSSP:P09052 RefSeq:XP_637262.1 ProteinModelPortal:Q54KG1 SMR:Q54KG1
IntAct:Q54KG1 EnsemblProtists:DDB0233452 GeneID:8626092
KEGG:ddi:DDB_G0287361 KO:K13116 OMA:DICRYLC Uniprot:Q54KG1
Length = 671
Score = 753 (270.1 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 176/476 (36%), Positives = 271/476 (56%)
Query: 408 KTKAEKLSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPI 466
KT +S+ D +K + Y K + + I ++ R QL + G+D+P PI
Sbjct: 162 KTFKPLVSVKDRAKDVIYTDSIKTNWRAPRYILERDEKDHQKVRDQLNIITDGEDIPPPI 221
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
T+ + + +++ + + +KP PIQ Q LPVI+SGRD IG+A TGSGKTL F LPM+
Sbjct: 222 TTFKEMKIPKPVIDVLLEKGIKKPSPIQVQGLPVILSGRDMIGIAYTGSGKTLVFTLPMV 281
Query: 527 RHIKDQP---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM---G----VRCVPVYG 576
++ P+ G+GP GLI+ P+REL +Q + + F + G +R + G
Sbjct: 282 LFALEEECKLPIIQGEGPFGLILCPSRELARQTYDLVNSFTNALHKNGGHPQLRTLLAIG 341
Query: 577 GSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP 636
G + +Q K+G +++ TPGR++D+L + KI N + YL +DEADR+ D+GFE
Sbjct: 342 GIDLREQEHIFKKGVHMIIATPGRLLDLL--NKKKI-NFKLCKYLGLDEADRLIDLGFED 398
Query: 637 QITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE-VR 695
I ++ N RQT+LFSAT P++++ AR L PVE+ VG N ++TQ VE V+
Sbjct: 399 DIRSVLDNFTNQRQTLLFSATMPKKIQEFARSALVLPVEVNVGRAGAANLNVTQEVEFVK 458
Query: 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755
PE+ + + LLE L + +LIF +++ D ++ LL +S+HG K Q +RES
Sbjct: 459 PEA-KIVYLLECLQK--TPPPVLIFCENKKDVDDIYEYLLLKQVEAVSIHGDKSQDERES 515
Query: 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI 815
I F+ ++L+AT VA++GLD E++ VINFD P E+Y+HR+GRTGR G KG A
Sbjct: 516 AIKAFREGKKDVLVATDVASKGLDFPEIQHVINFDMPREIENYIHRIGRTGRRGNKGVAT 575
Query: 816 TFISEEDAK-YSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGS 870
TFI++ + + DL L ++Q VP L + D + Q L+ +G GG+
Sbjct: 576 TFINKNNTESLLLDLKYLLIEAKQKVPPALLEIPDD--NQYLQKLQDRNGNTGGGA 629
Score = 47 (21.6 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 328 VEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSL 371
++K +N + G + ++ + +NGE+ K K L
Sbjct: 107 IKKQENKTQRELQQGGTIIENDVNSSNNNNNNGEENKIKEEKRL 150
>WB|WBGene00013214 [details] [associations]
symbol:Y54G11A.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008152 "metabolic process" evidence=IEA]
[GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AL034488 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 GeneTree:ENSGT00660000095174
HSSP:P10081 PIR:T27176 RefSeq:NP_496973.1 ProteinModelPortal:Q9XVZ6
SMR:Q9XVZ6 STRING:Q9XVZ6 PaxDb:Q9XVZ6 EnsemblMetazoa:Y54G11A.3
GeneID:175083 KEGG:cel:CELE_Y54G11A.3 UCSC:Y54G11A.3 CTD:175083
WormBase:Y54G11A.3 InParanoid:Q9XVZ6 OMA:NGFEKPS NextBio:886680
Uniprot:Q9XVZ6
Length = 504
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 182/475 (38%), Positives = 273/475 (57%)
Query: 403 MKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSA-YRKQLELKIHG-K 460
+K ++ + ++L + S + +P ++ Y E ++PE++ Y +K++ +
Sbjct: 14 LKTIESSIEDRLKDENFSWM--KPIVRDLYKIPNEQKNLSPEQLQELYTNGGVMKVYPFR 71
Query: 461 D-----VPKPIKTWHQT-GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+ +P P+ ++ Q G + IM IRK +EKP PIQ+Q P+++SG+DCIGV++TG
Sbjct: 72 EESTVKIPPPVNSFEQAFGSNASIMGEIRKNGFEKPSPIQSQMWPLLLSGQDCIGVSQTG 131
Query: 515 SGKTLAFVLPMLRHIKDQ-PPVAAGD-----GPVGLIMAPTRELVQQIHSDIRKFAKVMG 568
SGKTLAF+LP L HI Q D P L+++PTREL QQI +++K++ G
Sbjct: 132 SGKTLAFLLPALLHIDAQLAQYEKNDEEQKPSPFVLVLSPTRELAQQIEGEVKKYS-YNG 190
Query: 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628
+ V +YGG +Q+ + G EIV+ TPGR+ D+ S + +L VTY+V+DEADR
Sbjct: 191 YKSVCLYGGGSRPEQVEACRGGVEIVIATPGRLTDL---SNDGVISLASVTYVVLDEADR 247
Query: 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KD 687
M DMGFE I RI+ IRPDR L SAT+P V L K + V G + + K
Sbjct: 248 MLDMGFEVAIRRILFEIRPDRLVALTSATWPEGVRKLTDKYTKEAVMAVNGSLDLTSCKS 307
Query: 688 ITQLVEVRPESDRFLRLLELLG----EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLS 743
+TQ E P RFLR+ E++ + K++IFV S+ D L D G
Sbjct: 308 VTQFFEFVPHDSRFLRVCEIVNFLTAAHGQNYKMIIFVKSKVMADHLSSDFCMKGINSQG 367
Query: 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803
LHG + Q+DRE +++ +S +L+AT +A+RG+DV ++ V+N+D P E+YVHRVG
Sbjct: 368 LHGGRSQSDREMSLNMLRSGEVQILVATDLASRGIDVPDITHVLNYDFPMDIEEYVHRVG 427
Query: 804 RTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQG 858
RTGRAGRKG A++F+ D L++ LE SEQ VPD L+ A+ + K G
Sbjct: 428 RTGRAGRKGEAMSFLWWNDRSNFEGLIQILEKSEQEVPDQLRRDAEKYRLKCQSG 482
>UNIPROTKB|E2R052 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0035458 "cellular
response to interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 CTD:51428 EMBL:AAEX03002959
RefSeq:XP_536417.2 ProteinModelPortal:E2R052
Ensembl:ENSCAFT00000025858 GeneID:479274 KEGG:cfa:479274
NextBio:20854482 Uniprot:E2R052
Length = 622
Score = 735 (263.8 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 173/473 (36%), Positives = 263/473 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 127 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 186
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
+ I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ +RC GG V +Q
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 423
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 424 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 482 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 541
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
DL KAL L ++Q VP L+ L + ++ G E+ G + GG G +
Sbjct: 542 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLDIGGER--GCAFCGGLGHR 591
Score = 58 (25.5 bits), Expect = 6.6e-77, Sum P(2) = 6.6e-77
Identities = 28/93 (30%), Positives = 42/93 (45%)
Query: 254 DREDSDDEEVPQTG-KSETDMDADEE-----PKPSENQVG-DAMLVDSDGGSAAPALQIG 306
+R+ + +EV TG +SET+ + DEE P Q+ +L G+A Q
Sbjct: 7 ERKRARTDEVTATGSRSETEDEDDEEYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDS 66
Query: 307 AAE---DEDIDPLDAFMNSMVLPEVEKLKNTVE 336
+E DED PL N +L + + LK E
Sbjct: 67 GSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAE 99
>UNIPROTKB|J9NZF6 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AAEX03002959
Ensembl:ENSCAFT00000042923 Uniprot:J9NZF6
Length = 649
Score = 735 (263.8 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 173/473 (36%), Positives = 263/473 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 154 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 213
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
+ I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 214 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 273
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ +RC GG V +Q
Sbjct: 274 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 333
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 334 METIRHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 390
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 391 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 450
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 451 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 508
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 509 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 568
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
DL KAL L ++Q VP L+ L + ++ G E+ G + GG G +
Sbjct: 569 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLDIGGER--GCAFCGGLGHR 618
Score = 54 (24.1 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 27/86 (31%), Positives = 38/86 (44%)
Query: 261 EEVPQTG-KSETDMDADEE-----PKPSENQVG-DAMLVDSDGGSAAPALQIGAAE---D 310
+EV TG +SET+ + DEE P Q+ +L G+A Q +E D
Sbjct: 41 DEVTATGSRSETEDEDDEEYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGD 100
Query: 311 EDIDPLDAFMNSMVLPEVEKLKNTVE 336
ED PL N +L + + LK E
Sbjct: 101 EDDIPLGPQSNVSLLDQHQHLKEKAE 126
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 461 (167.3 bits), Expect = 1.8e-76, Sum P(3) = 1.8e-76
Identities = 95/213 (44%), Positives = 132/213 (61%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K MT + +R+ E+ I G VP PI+ W ++ L++ +++ I+K YEKP PIQ
Sbjct: 667 KSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQM 726
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA---AGDGPVGLIMAPTREL 552
QA+P+ + RD IG+A+TGSGKT AFVLPML ++K PP+ + DGP L++AP+REL
Sbjct: 727 QAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSREL 786
Query: 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612
QI+ + KFA R V V GG Q EL+RG EIV+ TPGR+ D L +
Sbjct: 787 AIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKA---Y 843
Query: 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
T L + Y+++DEADRM DMGFE + I+ I
Sbjct: 844 TVLNQCNYVILDEADRMMDMGFEDTVHYILDKI 876
Score = 384 (140.2 bits), Expect = 1.8e-76, Sum P(3) = 1.8e-76
Identities = 89/210 (42%), Positives = 125/210 (59%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 708
R T +FSAT P VE L+RK L P I +G + I Q +E E + +L E+L
Sbjct: 904 RLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQKLQEIL 963
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
E YE I++FV+ ++ D + + + K Y ++LHG K Q RE T+S FK+ ++L
Sbjct: 964 -EMYEP-PIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDIL 1021
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
+AT VA RG+DV ++LVINFD P E Y HR+GRTGRAG KG AI+FI+E D+ D
Sbjct: 1022 VATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLFYD 1081
Query: 829 LVKALELSEQVVPDDLKALADSFMAKVNQG 858
L + L S +VP +L A++ +KV G
Sbjct: 1082 LKQFLISSNNIVPLEL---ANNPASKVKPG 1108
Score = 47 (21.6 bits), Expect = 1.8e-76, Sum P(3) = 1.8e-76
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 311 EDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKS 370
EDI P + N + L N +P F E KK + D++ K+ +
Sbjct: 253 EDIHPNNTKANQKIFAN---LSNNEKPVFLTKKEREEKKKKMENDKQKKMISSKEKEEEG 309
Query: 371 LG 372
G
Sbjct: 310 EG 311
Score = 44 (20.5 bits), Expect = 3.8e-76, Sum P(3) = 3.8e-76
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 333 NTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSN 368
N V + + N+V + ++ G++R+N K N
Sbjct: 84 NDVNNNNVNNNDVNNDDVNNDGEKRNNISYDKNKKN 119
Score = 43 (20.2 bits), Expect = 4.9e-76, Sum P(3) = 4.9e-76
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 345 VESKKMDRKGDRRSNGEQPKKSSN 368
+ SK+ + +G+ GE+ KK +
Sbjct: 300 ISSKEKEEEGEGEGEGERKKKKEH 323
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 461 (167.3 bits), Expect = 1.8e-76, Sum P(3) = 1.8e-76
Identities = 95/213 (44%), Positives = 132/213 (61%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K MT + +R+ E+ I G VP PI+ W ++ L++ +++ I+K YEKP PIQ
Sbjct: 667 KSREEMTDRDWRIFREDNEIYIKGGVVPPPIRKWEESNLSNDLLKAIKKAKYEKPTPIQM 726
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA---AGDGPVGLIMAPTREL 552
QA+P+ + RD IG+A+TGSGKT AFVLPML ++K PP+ + DGP L++AP+REL
Sbjct: 727 QAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQLPPLTYETSQDGPYALVIAPSREL 786
Query: 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612
QI+ + KFA R V V GG Q EL+RG EIV+ TPGR+ D L +
Sbjct: 787 AIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKA---Y 843
Query: 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
T L + Y+++DEADRM DMGFE + I+ I
Sbjct: 844 TVLNQCNYVILDEADRMMDMGFEDTVHYILDKI 876
Score = 384 (140.2 bits), Expect = 1.8e-76, Sum P(3) = 1.8e-76
Identities = 89/210 (42%), Positives = 125/210 (59%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 708
R T +FSAT P VE L+RK L P I +G + I Q +E E + +L E+L
Sbjct: 904 RLTQMFSATMPPSVERLSRKYLRAPAYISIGDPGAGKRSIEQKLEFLTEGKKKQKLQEIL 963
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
E YE I++FV+ ++ D + + + K Y ++LHG K Q RE T+S FK+ ++L
Sbjct: 964 -EMYEP-PIIVFVNQKKVADIISKSITKMKYKAVALHGGKAQEIREQTLSAFKNAEFDIL 1021
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
+AT VA RG+DV ++LVINFD P E Y HR+GRTGRAG KG AI+FI+E D+ D
Sbjct: 1022 VATDVAGRGIDVHGVKLVINFDMPKDIESYTHRIGRTGRAGMKGLAISFITEHDSHLFYD 1081
Query: 829 LVKALELSEQVVPDDLKALADSFMAKVNQG 858
L + L S +VP +L A++ +KV G
Sbjct: 1082 LKQFLISSNNIVPLEL---ANNPASKVKPG 1108
Score = 47 (21.6 bits), Expect = 1.8e-76, Sum P(3) = 1.8e-76
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 311 EDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKS 370
EDI P + N + L N +P F E KK + D++ K+ +
Sbjct: 253 EDIHPNNTKANQKIFAN---LSNNEKPVFLTKKEREEKKKKMENDKQKKMISSKEKEEEG 309
Query: 371 LG 372
G
Sbjct: 310 EG 311
Score = 44 (20.5 bits), Expect = 3.8e-76, Sum P(3) = 3.8e-76
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 333 NTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSN 368
N V + + N+V + ++ G++R+N K N
Sbjct: 84 NDVNNNNVNNNDVNNDDVNNDGEKRNNISYDKNKKN 119
Score = 43 (20.2 bits), Expect = 4.9e-76, Sum P(3) = 4.9e-76
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 345 VESKKMDRKGDRRSNGEQPKKSSN 368
+ SK+ + +G+ GE+ KK +
Sbjct: 300 ISSKEKEEEGEGEGEGERKKKKEH 323
>UNIPROTKB|Q9UJV9 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0035458
"cellular response to interferon-beta" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005783
GO:GO:0007275 GO:GO:0005524 GO:GO:0006915 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0003723 GO:GO:0035458 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH471195
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 KO:K13116 EMBL:AF195417 EMBL:AK001255
EMBL:AK027768 EMBL:AK315491 EMBL:BC015476 EMBL:AL137455
EMBL:BX641072 IPI:IPI00007208 PIR:T46269 RefSeq:NP_057306.2
UniGene:Hs.484288 PDB:2P6N PDBsum:2P6N ProteinModelPortal:Q9UJV9
SMR:Q9UJV9 IntAct:Q9UJV9 MINT:MINT-3081244 STRING:Q9UJV9
PhosphoSite:Q9UJV9 DMDM:20532370 PaxDb:Q9UJV9 PeptideAtlas:Q9UJV9
PRIDE:Q9UJV9 DNASU:51428 Ensembl:ENST00000507955 GeneID:51428
KEGG:hsa:51428 UCSC:uc003mhn.3 CTD:51428 GeneCards:GC05M176938
HGNC:HGNC:18674 HPA:HPA017911 MIM:608170 neXtProt:NX_Q9UJV9
PharmGKB:PA134908862 HOGENOM:HOG000268792 InParanoid:Q9UJV9
OrthoDB:EOG4CVG6K PhylomeDB:Q9UJV9 ChiTaRS:DDX41
EvolutionaryTrace:Q9UJV9 GenomeRNAi:51428 NextBio:54987
ArrayExpress:Q9UJV9 Bgee:Q9UJV9 CleanEx:HS_DDX41
Genevestigator:Q9UJV9 GermOnline:ENSG00000183258 Uniprot:Q9UJV9
Length = 622
Score = 735 (263.8 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 173/473 (36%), Positives = 263/473 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 127 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 186
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
+ I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ +RC GG V +Q
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 423
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 424 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 482 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 541
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
DL KAL L ++Q VP L+ L + ++ G E+ G + GG G +
Sbjct: 542 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLDIGGER--GCAFCGGLGHR 591
Score = 51 (23.0 bits), Expect = 3.6e-76, Sum P(2) = 3.6e-76
Identities = 26/93 (27%), Positives = 41/93 (44%)
Query: 254 DREDSDDEEVPQTG-KSETDMDADEE-----PKPSENQVG-DAMLVDSDGGSAAPALQIG 306
+R+ + +EVP G +SE + + DE+ P Q+ +L G+A Q
Sbjct: 7 ERKRARTDEVPAGGSRSEAEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDS 66
Query: 307 AAE---DEDIDPLDAFMNSMVLPEVEKLKNTVE 336
+E DED PL N +L + + LK E
Sbjct: 67 GSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAE 99
>UNIPROTKB|D3IVZ2 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 EMBL:DAAA02075532
EMBL:GQ259590 IPI:IPI00955537 UniGene:Bt.89461
Ensembl:ENSBTAT00000065838 OMA:MSHEAVK Uniprot:D3IVZ2
Length = 661
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 177/441 (40%), Positives = 264/441 (59%)
Query: 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAK 512
+ +++ G + P I+++ + IM I Y +P P+Q A+P+I RD + A+
Sbjct: 166 IPVEVTGNNCPPHIESFSDVAMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQ 225
Query: 513 TGSGKTLAFVLPMLRHI-KDQPPVA------AGD-G-----PVGLIMAPTRELVQQIHSD 559
TGSGKT AF+LP+L I D P A +G G P+ L++APTREL QI+ +
Sbjct: 226 TGSGKTAAFLLPILSQIYTDGPGEALKAVKESGRYGRRKQYPISLVLAPTRELAVQIYEE 285
Query: 560 IRKFA-KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618
RKF+ + + CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L
Sbjct: 286 ARKFSYRSRVLPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFC 341
Query: 619 TYLVMDEADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPV 674
YLV+DEADRM DMGFEPQI RI+ Q+ P R T++FSATFP+++++LAR L++ +
Sbjct: 342 KYLVLDEADRMLDMGFEPQIRRIIEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYI 401
Query: 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL 734
+ VG +++ITQ V E+D+ LL+LL L+FV +++ D+L D
Sbjct: 402 FLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGTDSLTLVFVETKKGADSL-EDF 460
Query: 735 LKH-GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L H GY C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P
Sbjct: 461 LYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPG 520
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA-DSFM 852
E+YVHR+GRTGR G G A +F +E + S DL+ L ++Q VP L+ +A +
Sbjct: 521 DIEEYVHRIGRTGRVGNLGLATSFFNERNINISKDLLDLLVEAKQEVPSWLENMAYEHHY 580
Query: 853 AKVNQGLEQAHGTGYGGSGFK 873
N+G + G+G ++
Sbjct: 581 KSSNRGRSRRFSGGFGARDYR 601
>UNIPROTKB|A3KN07 [details] [associations]
symbol:DDX41 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IEA] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:DAAA02020056 EMBL:BC133465 IPI:IPI00840518
RefSeq:NP_001076071.1 UniGene:Bt.5258 SMR:A3KN07
Ensembl:ENSBTAT00000043510 GeneID:505276 KEGG:bta:505276
InParanoid:A3KN07 NextBio:20867058 Uniprot:A3KN07
Length = 622
Score = 736 (264.1 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 172/470 (36%), Positives = 260/470 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 127 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 186
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
+ I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 187 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ +RC GG V +Q
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 423
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 424 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 482 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 541
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKAL--ADSFMAKVN--QGLEQAHGTGY 867
DL KAL L ++Q VP L+ L D M ++ +G G G+
Sbjct: 542 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLEIGGERGCAFCGGLGH 590
Score = 46 (21.3 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 25/93 (26%), Positives = 40/93 (43%)
Query: 254 DREDSDDEEVPQTG-KSETDMDADEE-----PKPSENQVG-DAMLVDSDGGSAAPALQIG 306
+R+ + +E TG +SE + + DE+ P Q+ +L G+A Q
Sbjct: 7 ERKRARTDEATATGSRSEAEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDS 66
Query: 307 AAE---DEDIDPLDAFMNSMVLPEVEKLKNTVE 336
+E DED PL N +L + + LK E
Sbjct: 67 GSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAE 99
>UNIPROTKB|J3KNN5 [details] [associations]
symbol:DDX41 "Probable ATP-dependent RNA helicase DDX41"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:KDQEERS HGNC:HGNC:18674 ChiTaRS:DDX41 EMBL:AC145098
Ensembl:ENST00000330503 Uniprot:J3KNN5
Length = 640
Score = 735 (263.8 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 173/473 (36%), Positives = 263/473 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 145 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 204
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
+ I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 205 KFPAAILRGLKKKGIHHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 264
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ +RC GG V +Q
Sbjct: 265 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 324
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 325 METIRHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 381
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 382 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 441
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 442 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 499
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 500 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 559
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
DL KAL L ++Q VP L+ L + ++ G E+ G + GG G +
Sbjct: 560 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLDIGGER--GCAFCGGLGHR 609
Score = 47 (21.6 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 25/86 (29%), Positives = 37/86 (43%)
Query: 261 EEVPQTG-KSETDMDADEE-----PKPSENQVG-DAMLVDSDGGSAAPALQIGAAE---D 310
+EVP G +SE + + DE+ P Q+ +L G+A Q +E D
Sbjct: 32 DEVPAGGSRSEAEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDSGSEPRGD 91
Query: 311 EDIDPLDAFMNSMVLPEVEKLKNTVE 336
ED PL N +L + + LK E
Sbjct: 92 EDDIPLGPQSNVSLLDQHQHLKEKAE 117
>UNIPROTKB|F1RX16 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 OMA:KYERGGN
EMBL:CU861899 Ensembl:ENSSSCT00000013398 Uniprot:F1RX16
Length = 661
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 179/436 (41%), Positives = 263/436 (60%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 232 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 292 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 347
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V ESD+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 408 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGY 466
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 526
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAK-VNQG 858
HR+GRTGR G G A +F +E +A + DL+ L ++Q VP L+ +A K ++G
Sbjct: 527 HRIGRTGRVGNLGLATSFFNERNANITKDLLDLLVEAKQEVPSWLENMAYEHHYKGSSRG 586
Query: 859 LEQAHGTG-YGGSGFK 873
++ +G +G ++
Sbjct: 587 RSKSRFSGGFGARDYR 602
>TAIR|locus:2041549 [details] [associations]
symbol:AT2G42520 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005777 "peroxisome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005777 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC007087 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K11594 ProtClustDB:CLSN2683925
EMBL:BT004111 IPI:IPI00545939 PIR:H84854 RefSeq:NP_181780.1
UniGene:At.43442 ProteinModelPortal:Q84W89 SMR:Q84W89 IntAct:Q84W89
PaxDb:Q84W89 PRIDE:Q84W89 EnsemblPlants:AT2G42520.1 GeneID:818852
KEGG:ath:AT2G42520 GeneFarm:1013 TAIR:At2g42520 InParanoid:Q84W89
OMA:ADSENTG PhylomeDB:Q84W89 Genevestigator:Q84W89
GermOnline:AT2G42520 Uniprot:Q84W89
Length = 633
Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
Identities = 172/441 (39%), Positives = 261/441 (59%)
Query: 448 AYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDC 507
AY + + ++ G +VP P+ T+ + L + IR+ Y KP P+Q A+P+++ GRD
Sbjct: 141 AY-EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDL 199
Query: 508 IGVAKTGSGKTLAFVLPMLRHI-KDQ----PPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562
+ A+TGSGKT AF P++ I KDQ P + P+ +I++PTREL QIH + +K
Sbjct: 200 MACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKK 259
Query: 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622
F+ GV+ V YGG+ + QQ+ EL+RG +I+V TPGR+ D+L +++ ++ + +L
Sbjct: 260 FSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLNDLL--ERARVS-MQMIRFLA 316
Query: 623 MDEADRMFDMGFEPQITRIVQNI----RPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+DEADRM DMGFEPQI +IV+ + R RQT+LFSATFPR+++ LA L + + V
Sbjct: 317 LDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYIFLAV 376
Query: 679 GGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE---KGK---ILIFVHSQEKCDALFR 732
G I Q VE +SD+ L++LL E +GK L+FV ++ D+L
Sbjct: 377 GRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGADSLEN 436
Query: 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP 792
L +G+P S+HG + Q +RE + FKS +L+AT VAARGLD+ + V+NFD P
Sbjct: 437 WLCINGFPATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLP 496
Query: 793 NHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM 852
N +DYVHR+GRTGRAG+ G A F ++ + + L + ++ + Q VP+ L A
Sbjct: 497 NDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASR-- 554
Query: 853 AKVNQGLEQAHGTGYGGSGFK 873
+ G + G +GG F+
Sbjct: 555 SSFGGGKNRRSGGRFGGRDFR 575
>WB|WBGene00017162 [details] [associations]
symbol:ddx-23 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0040011 "locomotion" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0010172 "embryonic body morphogenesis" evidence=IMP]
[GO:0048589 "developmental growth" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0040021 "hermaphrodite germ-line sex determination"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0002009 GO:GO:0002119 GO:GO:0040011
GO:GO:0003676 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281
GO:GO:0048589 EMBL:FO080705 GO:GO:0010172 GO:GO:0040020
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 HSSP:Q58083 HOGENOM:HOG000268796
OMA:PIRNWKE GO:GO:0040021 RefSeq:NP_498260.2
ProteinModelPortal:Q95QN2 SMR:Q95QN2 STRING:Q95QN2 PaxDb:Q95QN2
EnsemblMetazoa:F01F1.7 GeneID:175818 KEGG:cel:CELE_F01F1.7
CTD:175818 WormBase:F01F1.7 InParanoid:Q95QN2 NextBio:889790
Uniprot:Q95QN2
Length = 730
Score = 467 (169.5 bits), Expect = 3.1e-75, Sum P(3) = 3.1e-75
Identities = 87/218 (39%), Positives = 140/218 (64%)
Query: 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQ 494
+KE++ M+ + +R+ + I G VP+P++ W + G ++ + ++++ Y +P PIQ
Sbjct: 269 MKELSEMSDRDWRIFREDFNISIKGGRVPRPLRNWEEAGFPDEVYQAVKEIGYLEPTPIQ 328
Query: 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD----GPVGLIMAPTR 550
QA+P+ + RD IGVA+TGSGKT AF+LP+L I P + + GP +IMAPTR
Sbjct: 329 RQAIPIGLQNRDVIGVAETGSGKTAAFLLPLLVWITSLPKMERQEHRDLGPYAIIMAPTR 388
Query: 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG 610
EL QQI + KF K++G++ V V GG+ Q +L+ G E+V+ TPGR++D+L
Sbjct: 389 ELAQQIEEETNKFGKLLGIKTVSVIGGASREDQGMKLRMGVEVVIATPGRLLDVL---EN 445
Query: 611 KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648
+ L + TY+++DEADRM DMGFEP + ++++ + PD
Sbjct: 446 RYLLLNQCTYVILDEADRMLDMGFEPDVQKVLEYM-PD 482
Score = 353 (129.3 bits), Expect = 3.1e-75, Sum P(3) = 3.1e-75
Identities = 73/185 (39%), Positives = 111/185 (60%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 708
RQTV+F+AT +E LAR+ L +P + +G + + Q+V + PE + +L+E+L
Sbjct: 509 RQTVMFTATMSSAIERLARQYLRRPAVVHIGSAGKPTERVEQVVYMVPEDRKRKKLVEVL 568
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
++ I+IFV+ ++ D L + L K G+ LHG K Q RE + K ++L
Sbjct: 569 ESQFQP-PIIIFVNQKKGADMLSKGLTKLGFKPTVLHGGKGQDQREYALQALKEGTSDIL 627
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
+AT VA RG+DVK++ LV+N+D EDY HR+GRTGRAG+ G AITF++ +D D
Sbjct: 628 VATDVAGRGIDVKDVSLVLNYDMAKSIEDYTHRIGRTGRAGKHGKAITFLTPDDTAVYFD 687
Query: 829 LVKAL 833
L + L
Sbjct: 688 LKQVL 692
Score = 39 (18.8 bits), Expect = 3.1e-75, Sum P(3) = 3.1e-75
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 167 SRSNRHRDENDESPR 181
SRS RD ND+ R
Sbjct: 126 SRSRDRRDRNDDRKR 140
>RGD|1311758 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035458 "cellular response to interferon-beta"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0051607
"defense response to virus" evidence=IEA;ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 RGD:1311758 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0051607
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH474032 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOVERGEN:HBG015893 KO:K13116 CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:BC166825 IPI:IPI00565869
RefSeq:NP_001101516.1 UniGene:Rn.114971 SMR:B2RYL8
Ensembl:ENSRNOT00000018114 GeneID:314336 KEGG:rno:314336
UCSC:RGD:1311758 NextBio:667511 Genevestigator:B2RYL8
Uniprot:B2RYL8
Length = 622
Score = 736 (264.1 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 174/473 (36%), Positives = 264/473 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 127 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 186
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L + I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 187 KLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ +RC GG V +Q
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 423
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 424 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 482 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 541
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
DL KAL L ++Q VP L+ L + ++ G E+ G + GG G +
Sbjct: 542 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLDIGGER--GCAFCGGLGHR 591
Score = 41 (19.5 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 24/93 (25%), Positives = 35/93 (37%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEE------PKPSENQVG-DAMLVDSDGGSAAPALQIG 306
+R+ + E G D D D+E P Q+ +L G+A Q
Sbjct: 7 ERKRARTNEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRKGAAEEEQQDS 66
Query: 307 AAE---DEDIDPLDAFMNSMVLPEVEKLKNTVE 336
+E DED PL N +L + + LK E
Sbjct: 67 GSEPRGDEDDIPLGPQSNVSLLDQHQHLKEKAE 99
>SGD|S000005730 [details] [associations]
symbol:DED1 "ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA
helicase" species:4932 "Saccharomyces cerevisiae" [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA;IC]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IMP;IDA]
[GO:0033592 "RNA strand annealing activity" evidence=IDA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000005730 GO:GO:0005524 GO:GO:0005737
EMBL:BK006948 GO:GO:0006413 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4 OMA:GNWANAN
EMBL:X57278 EMBL:Z75110 EMBL:X03245 PIR:S13653 RefSeq:NP_014847.3
RefSeq:NP_014849.3 ProteinModelPortal:P06634 SMR:P06634
DIP:DIP-5820N IntAct:P06634 MINT:MINT-697363 STRING:P06634
PaxDb:P06634 PeptideAtlas:P06634 EnsemblFungi:YOR204W GeneID:854379
GeneID:854381 KEGG:sce:YOR204W KEGG:sce:YOR206W CYGD:YOR204w
KO:K14833 SABIO-RK:P06634 NextBio:976514 Genevestigator:P06634
GermOnline:YOR204W GO:GO:0033592 Uniprot:P06634
Length = 604
Score = 734 (263.4 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 170/424 (40%), Positives = 246/424 (58%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
GKDVP+PI + L ++E I+ + KP P+Q ++P++ +GRD + A+TGSGKT
Sbjct: 134 GKDVPEPITEFTSPPLDGLLLENIKLARFTKPTPVQKYSVPIVANGRDLMACAQTGSGKT 193
Query: 519 LAFVLPMLRH-IKDQP-PVAAGDG--------PVGLIMAPTRELVQQIHSDIRKFAKVMG 568
F+ P+L K P P G P +IMAPTREL QI + +KF
Sbjct: 194 GGFLFPVLSESFKTGPSPQPESQGSFYQRKAYPTAVIMAPTRELATQIFDEAKKFTYRSW 253
Query: 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628
V+ VYGGS + Q+ E++RG +++V TPGR+ D+L GKI+ L V YLV+DEADR
Sbjct: 254 VKACVVYGGSPIGNQLREIERGCDLLVATPGRLNDLL--ERGKIS-LANVKYLVLDEADR 310
Query: 629 MFDMGFEPQITRIVQN--IRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV 684
M DMGFEPQI IV++ + P +RQT++FSATFP ++ LAR L+ + + VG
Sbjct: 311 MLDMGFEPQIRHIVEDCDMTPVGERQTLMFSATFPADIQHLARDFLSDYIFLSVGRVGST 370
Query: 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+++ITQ V D+ LL+LL + G LIFV ++ D L L+ + ++
Sbjct: 371 SENITQKVLYVENQDKKSALLDLLSASTD-GLTLIFVETKRMADQLTDFLIMQNFRATAI 429
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG + Q++RE ++ F+S LL+AT+VAARGLD+ + VIN+D P+ +DYVHR+GR
Sbjct: 430 HGDRTQSERERALAAFRSGAATLLVATAVAARGLDIPNVTHVINYDLPSDVDDYVHRIGR 489
Query: 805 TGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHG 864
TGRAG G A F + E++ L + L + Q VP LK D+ M+ G
Sbjct: 490 TGRAGNTGLATAFFNSENSNIVKGLHEILTEANQEVPSFLK---DAMMSAPGSRSNSRRG 546
Query: 865 TGYG 868
G+G
Sbjct: 547 -GFG 549
Score = 43 (20.2 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 339 FTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDY 384
F GNN S+ R G R +G+ N+ I G D ++
Sbjct: 70 FFGGNNGGSRSNGRSGGRWIDGKHVPAPRNEKAEIAIFGVPEDPNF 115
>UNIPROTKB|F1NIX2 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 EMBL:AADN02011031 IPI:IPI00579247
Ensembl:ENSGALT00000026171 ArrayExpress:F1NIX2 Uniprot:F1NIX2
Length = 636
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 177/410 (43%), Positives = 251/410 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 148 GSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 207
Query: 519 LAFVLPMLRHI-KDQPPVA-----AGDG--------PVGLIMAPTRELVQQIHSDIRKFA 564
AF+LP+L I D P A A +G P+ L++APTREL QI+ + RKFA
Sbjct: 208 AAFLLPILSQIYADGPGDALRAMKATNGRYGRRKQYPISLVLAPTRELAVQIYEEARKFA 267
Query: 565 KVMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+
Sbjct: 268 YRSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVL 323
Query: 624 DEADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
DEADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 324 DEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVG 383
Query: 680 GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-G 738
+++ITQ V E D+ LL+LL + L+FV +++ DAL D L H G
Sbjct: 384 RVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADAL-EDFLYHEG 442
Query: 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDY 798
Y C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+Y
Sbjct: 443 YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEY 502
Query: 799 VHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
VHR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 503 VHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 552
>UNIPROTKB|D6RJA6 [details] [associations]
symbol:DDX46 "Probable ATP-dependent RNA helicase DDX46"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 GO:GO:0005730
EMBL:CH471062 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:Hs.406549 HGNC:HGNC:18681 ChiTaRS:DDX46 EMBL:AC006077
EMBL:AC010301 IPI:IPI00967303 SMR:D6RJA6 Ensembl:ENST00000507392
Uniprot:D6RJA6
Length = 471
Score = 684 (245.8 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 145/321 (45%), Positives = 199/321 (61%)
Query: 293 DSDGGSAAPALQIG-AAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMD 351
D D A A + G E E++DPLDA+M V EV+K N GN +S
Sbjct: 156 DDDEDDPAEAEKEGNEMEGEELDPLDAYMEE-VKEEVKKF-NMRSVKGGGGNEKKSGPTV 213
Query: 352 RKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKA 411
K ++ S+K G ++ + +Y +TK
Sbjct: 214 TKVVTVVTTKKAVVDSDKKKGELMENDQDAMEYSSEEEEVDLQTALTGY-------QTKQ 266
Query: 412 EKL-SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTW 469
KL VDH KI+Y+PFRKNFY+EV E+A+M+ EEV+ +R ++E + + GK PKPIK+W
Sbjct: 267 RKLLEPVDHGKIEYEPFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSW 326
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
Q G++ KI+ +++K YEKP PIQ QA+P IMSGRD IG+AKTGSGKT+AF+LPM RHI
Sbjct: 327 VQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHI 386
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
DQ + G+GP+ +IM PTREL QI + +KF+K +G+R V VYGG+G+++QI+ELKR
Sbjct: 387 MDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGGTGISEQIAELKR 446
Query: 590 GTEIVVCTPGRMIDILCTSGG 610
G EI+VCTPGRMID+L + G
Sbjct: 447 GAEIIVCTPGRMIDMLAANSG 467
Score = 92 (37.4 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 212 MEKRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSDDEEVPQTGKSET 271
M KR+ RV++W+ +EE K G+ W+L+ +D D+++ + K
Sbjct: 112 MRKRKERVEKWREEQRKKAMENIGEL-KKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGN 170
Query: 272 DMDADE 277
+M+ +E
Sbjct: 171 EMEGEE 176
Score = 40 (19.1 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 261 EEVPQTGKSETDMDADEEPKPSE-NQVGDAM 290
EE+ Q K + D D+E P+E + G+ M
Sbjct: 142 EEMKQGKKWSLEDDDDDEDDPAEAEKEGNEM 172
Score = 38 (18.4 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSE 283
D++D +DE+ G + + +E K E
Sbjct: 88 DKDDKEDEKEKDAGNFDQNKLEEEMRKRKE 117
Score = 37 (18.1 bits), Expect = 2.6e-69, Sum P(2) = 2.6e-69
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 255 REDSDDEEVPQTGKSETDMDADEEPKPSEN 284
+E +D E + K + D DE+ K + N
Sbjct: 73 KEKTDGGESSKEKKKDKDDKEDEKEKDAGN 102
>MGI|MGI:91842 [details] [associations]
symbol:D1Pas1 "DNA segment, Chr 1, Pasteur Institute 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0030154 "cell differentiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:91842
GO:GO:0007275 GO:GO:0005524 GO:GO:0030154 GO:GO:0003677
GO:GO:0007283 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
KO:K11594 HOVERGEN:HBG015893 EMBL:J04847 EMBL:AK029542
IPI:IPI00133708 PIR:A32378 RefSeq:NP_149068.1 UniGene:Mm.108054
ProteinModelPortal:P16381 SMR:P16381 IntAct:P16381 STRING:P16381
PhosphoSite:P16381 PaxDb:P16381 PRIDE:P16381
Ensembl:ENSMUST00000045108 GeneID:110957 KEGG:mmu:110957 CTD:110957
InParanoid:P16381 OMA:HIVQECD OrthoDB:EOG4S7JPR NextBio:365019
Bgee:P16381 CleanEx:MM_D1PAS1 Genevestigator:P16381
GermOnline:ENSMUSG00000039224 Uniprot:P16381
Length = 660
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 174/409 (42%), Positives = 251/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 171 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 230
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 231 AAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 290
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 291 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 346
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V E+D+ LL+LL + IL+FV +++ D+L D L H GY
Sbjct: 407 VGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSL-EDFLYHEGY 465
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 466 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 525
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 526 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 574
>RGD|1309586 [details] [associations]
symbol:RGD1309586 "similar to probable ATP-dependent RNA
helicase - mouse" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309586 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 OMA:HIVQECD
OrthoDB:EOG4S7JPR EMBL:CH473985 IPI:IPI00954695
RefSeq:NP_001102328.1 UniGene:Rn.218622 Ensembl:ENSRNOT00000003378
GeneID:364073 KEGG:rno:364073 UCSC:RGD:1309586 CTD:364073
NextBio:684798 Uniprot:D3ZN21
Length = 659
Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
Identities = 174/409 (42%), Positives = 251/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 170 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 229
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 230 AAFLLPILSQIYTDGPGEALRAMKENGKYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 289
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 290 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 345
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V E+D+ LL+LL + IL+FV +++ D+L D L H GY
Sbjct: 406 VGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSL-EDFLYHEGY 464
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 524
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 525 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 573
>UNIPROTKB|G5E631 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2001243 "negative regulation of intrinsic apoptotic
signaling pathway" evidence=IEA] [GO:1900087 "positive regulation
of G1/S transition of mitotic cell cycle" evidence=IEA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=IEA] [GO:0071470
"cellular response to osmotic stress" evidence=IEA] [GO:0071243
"cellular response to arsenic-containing substance" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0045948
"positive regulation of translational initiation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043280 "positive regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IEA] [GO:0043154 "negative regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043065 "positive regulation of apoptotic
process" evidence=IEA] [GO:0043024 "ribosomal small subunit
binding" evidence=IEA] [GO:0042256 "mature ribosome assembly"
evidence=IEA] [GO:0035613 "RNA stem-loop binding" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0031333
"negative regulation of protein complex assembly" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=IEA]
[GO:0030307 "positive regulation of cell growth" evidence=IEA]
[GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008625 "extrinsic apoptotic
signaling pathway via death domain receptors" evidence=IEA]
[GO:0008190 "eukaryotic initiation factor 4E binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0007243
"intracellular protein kinase cascade" evidence=IEA] [GO:0007059
"chromosome segregation" evidence=IEA] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654
OMA:KYERGGN EMBL:DAAA02073612 RefSeq:NP_001179891.1 UniGene:Bt.9783
PRIDE:G5E631 Ensembl:ENSBTAT00000050399 GeneID:510093
KEGG:bta:510093 NextBio:20869274 Uniprot:G5E631
Length = 661
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 174/409 (42%), Positives = 250/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 171 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 230
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 231 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 290
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 291 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 346
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 347 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 406
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V ESD+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 407 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGY 465
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 466 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 525
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 526 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 574
>UNIPROTKB|J9P0V9 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K11594 CTD:1654 EMBL:AAEX03026295
RefSeq:XP_861268.1 Ensembl:ENSCAFT00000045177 GeneID:480886
KEGG:cfa:480886 Uniprot:J9P0V9
Length = 662
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 174/409 (42%), Positives = 250/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 232 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 292 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 347
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V ESD+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 408 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGY 466
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 526
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 527 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 575
>UNIPROTKB|O00571 [details] [associations]
symbol:DDX3X "ATP-dependent RNA helicase DDX3X"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0030307 "positive
regulation of cell growth" evidence=IMP] [GO:0005852 "eukaryotic
translation initiation factor 3 complex" evidence=IDA] [GO:1900087
"positive regulation of G1/S transition of mitotic cell cycle"
evidence=IMP] [GO:0045948 "positive regulation of translational
initiation" evidence=IMP] [GO:0031333 "negative regulation of
protein complex assembly" evidence=IDA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IMP] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0071470 "cellular response to osmotic
stress" evidence=IDA] [GO:0071243 "cellular response to
arsenic-containing substance" evidence=IDA] [GO:2001243 "negative
regulation of intrinsic apoptotic signaling pathway" evidence=IMP]
[GO:0007059 "chromosome segregation" evidence=IMP] [GO:0022627
"cytosolic small ribosomal subunit" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0042256 "mature
ribosome assembly" evidence=IMP] [GO:0043024 "ribosomal small
subunit binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0009615 "response to virus" evidence=IDA] [GO:0007243
"intracellular protein kinase cascade" evidence=IDA] [GO:0032728
"positive regulation of interferon-beta production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=IMP] [GO:0071651
"positive regulation of chemokine (C-C motif) ligand 5 production"
evidence=TAS] [GO:0035613 "RNA stem-loop binding" evidence=IDA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0008134
"transcription factor binding" evidence=IDA] [GO:0030308 "negative
regulation of cell growth" evidence=IDA] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043154 "negative regulation of
cysteine-type endopeptidase activity involved in apoptotic process"
evidence=IMP] [GO:0097193 "intrinsic apoptotic signaling pathway"
evidence=IMP] [GO:0043280 "positive regulation of cysteine-type
endopeptidase activity involved in apoptotic process" evidence=IMP]
[GO:0043065 "positive regulation of apoptotic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0019048
GO:GO:0043066 GO:GO:0043154 GO:GO:0030307 GO:GO:0007059
GO:GO:0030308 GO:GO:0005741 GO:GO:0017148 GO:GO:0003677
GO:GO:0031333 GO:GO:0016607 GO:GO:0045944 GO:GO:0045087
GO:GO:0007243 GO:GO:0006351 GO:GO:0009615 GO:GO:0043065
GO:GO:0048027 GO:GO:0043280 GO:GO:0071470 GO:GO:0004003
GO:GO:0097193 GO:GO:1900087 GO:GO:0008134 EMBL:CH471141
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
KO:K11594 HOVERGEN:HBG015893 EMBL:U50553 EMBL:AF061337
EMBL:AF000983 EMBL:AF000982 EMBL:AK291153 EMBL:AK304689
EMBL:AL391647 EMBL:Z93015 EMBL:BC011819 IPI:IPI00215637
IPI:IPI00985384 RefSeq:NP_001180346.1 RefSeq:NP_001347.3
UniGene:Hs.380774 PDB:2I4I PDB:2JGN PDB:3JRV PDBsum:2I4I
PDBsum:2JGN PDBsum:3JRV ProteinModelPortal:O00571 SMR:O00571
DIP:DIP-27551N IntAct:O00571 MINT:MINT-93217 STRING:O00571
PhosphoSite:O00571 REPRODUCTION-2DPAGE:IPI00215637
SWISS-2DPAGE:O00571 PaxDb:O00571 PeptideAtlas:O00571 PRIDE:O00571
Ensembl:ENST00000399959 Ensembl:ENST00000457138 GeneID:1654
KEGG:hsa:1654 UCSC:uc004dfe.3 CTD:1654 GeneCards:GC0XP041192
HGNC:HGNC:2745 HPA:HPA001648 HPA:HPA005631 MIM:300160
neXtProt:NX_O00571 PharmGKB:PA27216 InParanoid:O00571 OMA:KYERGGN
OrthoDB:EOG47D9FV PhylomeDB:O00571 BindingDB:O00571
ChEMBL:CHEMBL5553 ChiTaRS:DDX3X EvolutionaryTrace:O00571
GenomeRNAi:1654 NextBio:6810 ArrayExpress:O00571 Bgee:O00571
CleanEx:HS_DDX3X Genevestigator:O00571 GermOnline:ENSG00000124487
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 GO:GO:0071651
GO:GO:0032728 Uniprot:O00571
Length = 662
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 174/409 (42%), Positives = 250/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 232 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 292 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 347
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V ESD+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 408 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGY 466
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 526
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 527 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 575
>UNIPROTKB|F1NIX1 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AADN02011031
IPI:IPI00822944 Ensembl:ENSGALT00000026172 ArrayExpress:F1NIX1
Uniprot:F1NIX1
Length = 638
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 176/409 (43%), Positives = 250/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 150 GSNCPPHIESFSDVDMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 209
Query: 519 LAFVLPMLRHI-KDQPPVAAG----DG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I D P A +G P+ L++APTREL QI+ + RKFA
Sbjct: 210 AAFLLPILSQIYADGPGDALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFAY 269
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 270 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 325
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 326 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 385
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V E D+ LL+LL + L+FV +++ DAL D L H GY
Sbjct: 386 VGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADAL-EDFLYHEGY 444
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 445 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 504
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 505 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 553
>UNIPROTKB|E2RRQ7 [details] [associations]
symbol:DDX3X "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KYERGGN EMBL:AAEX03026295
Ensembl:ENSCAFT00000022643 Uniprot:E2RRQ7
Length = 706
Score = 755 (270.8 bits), Expect = 7.3e-75, P = 7.3e-75
Identities = 177/412 (42%), Positives = 252/412 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 214 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 273
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 274 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 333
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 334 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 389
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 390 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 449
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK---ILIFVHSQEKCDALFRDLLKH 737
+++ITQ V ESD+ LL+LL E GK L+FV +++ D+L D L H
Sbjct: 450 VGSTSENITQKVVWVEESDKRSFLLDLLNAT-ESGKDSLTLVFVETKKGADSL-EDFLYH 507
Query: 738 -GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796
GY C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E
Sbjct: 508 EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIE 567
Query: 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
+YVHR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 568 EYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 619
>UNIPROTKB|B4DLW8 [details] [associations]
symbol:DDX5 "Probable ATP-dependent RNA helicase DDX5"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003712 "transcription cofactor activity"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR012587 Pfam:PF00270 Pfam:PF00271
Pfam:PF08061 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003676 GO:GO:0003712
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AC009994 GO:GO:0003724 HOVERGEN:HBG015893 UniGene:Hs.279806
HGNC:HGNC:2746 ChiTaRS:DDX5 EMBL:AK297192 IPI:IPI00798375
STRING:B4DLW8 Ensembl:ENST00000450599 UCSC:uc010wqa.1
Uniprot:B4DLW8
Length = 535
Score = 686 (246.5 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 138/316 (43%), Positives = 205/316 (64%)
Query: 538 GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCT 597
GDGP+ L++APTREL QQ+ ++ + ++ +YGG+ QI +L+RG EI + T
Sbjct: 86 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIAT 145
Query: 598 PGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656
PGR+ID L C GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SA
Sbjct: 146 PGRLIDFLEC---GK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSA 201
Query: 657 TFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGE-WYEK 714
T+P++V LA L + I +G + N +I Q+V+V + ++ +L+ L+ E EK
Sbjct: 202 TWPKEVRQLAEDFLKDYIHINIGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEK 261
Query: 715 -GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773
K ++FV ++ +CD L R + + G+P + +HG K Q +R+ +++FK +LIAT V
Sbjct: 262 ENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGKAPILIATDV 321
Query: 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833
A+RGLDV++++ VIN+D PN EDY+HR+GRT R+ + G A TF + + K DL+ L
Sbjct: 322 ASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVSDLISVL 381
Query: 834 ELSEQVVPDDLKALAD 849
+ Q + L L +
Sbjct: 382 REANQAINPKLLQLVE 397
Score = 86 (35.3 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 412 EKLSIVDHSKIDYQP-FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVP 463
EKL + +D P F KNFY E ++AR T +EV YR+ E+ + G D P
Sbjct: 39 EKL-VKKKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRG-DGP 89
>RGD|2314437 [details] [associations]
symbol:Ddx3y "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3 Y-linked"
species:10116 "Rattus norvegicus" [GO:0005737 "cytoplasm"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:2314437 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K11594 CTD:8653
EMBL:FJ775727 IPI:IPI00196210 RefSeq:NP_001161137.1
UniGene:Rn.95841 ProteinModelPortal:C9WPN2 PRIDE:C9WPN2
GeneID:100312982 KEGG:rno:100312982 UCSC:RGD:2314437 Uniprot:C9WPN2
Length = 652
Score = 734 (263.4 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 174/435 (40%), Positives = 256/435 (58%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+ + + IM I Y +P P+Q A+P+I RD + A+TGSG T
Sbjct: 165 GNNCPPHIENFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGCT 224
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 225 AAFLLPILSQIYTDGPGEALKAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 284
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 285 RSRVRPCV-VYGGADTVQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 340
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 341 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 400
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740
+++ITQ V E D+ LL+LL L+FV +++ D+L L + Y
Sbjct: 401 VGSTSENITQKVVWVEELDKRSFLLDLLNATGRDSLTLVFVETKKGADSLENFLFQERYA 460
Query: 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YVH
Sbjct: 461 CTSIHGDRSQKDREEALHQFRSGRKPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 520
Query: 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN-QGL 859
R+GRTGR G G A +F +E + + DL+ L ++Q VP L+++A K N +G
Sbjct: 521 RIGRTGRVGNLGLATSFFNERNLNITKDLLDLLVEAKQEVPSWLESMAYEHHYKGNSRGR 580
Query: 860 EQAHGTG-YGGSGFK 873
++ +G +G ++
Sbjct: 581 SKSRFSGGFGARDYR 595
Score = 37 (18.1 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 5/10 (50%), Positives = 7/10 (70%)
Query: 863 HGTGYGGSGF 872
H G+GG G+
Sbjct: 620 HNRGFGGGGY 629
>MGI|MGI:1920185 [details] [associations]
symbol:Ddx41 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 41"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0035458 "cellular response to
interferon-beta" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
MGI:MGI:1920185 GO:GO:0005783 GO:GO:0005524 GO:GO:0005634
GO:GO:0008380 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006397 GO:GO:0045944 GO:GO:0051607 GO:GO:0003723
GO:GO:0035458 GO:GO:0071013 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HOVERGEN:HBG015893
KO:K13116 OMA:KDQEERS CTD:51428 HOGENOM:HOG000268792
OrthoDB:EOG4CVG6K EMBL:AK156957 EMBL:BC011308 IPI:IPI00127071
RefSeq:NP_598820.2 UniGene:Mm.205045 ProteinModelPortal:Q91VN6
SMR:Q91VN6 IntAct:Q91VN6 STRING:Q91VN6 PhosphoSite:Q91VN6
PaxDb:Q91VN6 PRIDE:Q91VN6 Ensembl:ENSMUST00000021956 GeneID:72935
KEGG:mmu:72935 InParanoid:Q3U0E0 NextBio:337171 Bgee:Q91VN6
CleanEx:MM_DDX41 Genevestigator:Q91VN6
GermOnline:ENSMUSG00000021494 Uniprot:Q91VN6
Length = 622
Score = 732 (262.7 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 173/473 (36%), Positives = 263/473 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 127 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 186
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
+ I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 187 KFPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 246
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ +RC GG V +Q
Sbjct: 247 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLRCALCIGGMSVKEQ 306
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 307 METIRHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 363
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 364 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 423
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 424 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 481
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 482 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 541
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
DL KAL L ++Q VP L+ L + ++ G E+ G + GG G +
Sbjct: 542 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLDIGGER--GCAFCGGLGHR 591
Score = 39 (18.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
Identities = 24/97 (24%), Positives = 38/97 (39%)
Query: 240 ANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSA 299
A +E AG + + D ++ D++ VP + ++ + G D GS
Sbjct: 11 ARADEATAGGSRSEDEDEDDEDYVPYVPLRQRRQLLLQKLLQRRRK-GATEEEQQDSGSE 69
Query: 300 APALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVE 336
P G DED PL N +L + + LK E
Sbjct: 70 -PR---G---DEDDIPLGPQSNVSLLDQHQHLKEKAE 99
>DICTYBASE|DDB_G0283661 [details] [associations]
symbol:ddx3 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0283661 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000056 GenomeReviews:CM000153_GR GO:GO:0006397
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K11594 HSSP:P09052 RefSeq:XP_638950.1 ProteinModelPortal:Q54QS3
SMR:Q54QS3 PRIDE:Q54QS3 EnsemblProtists:DDB0233447 GeneID:8624189
KEGG:ddi:DDB_G0283661 OMA:SEHICAP Uniprot:Q54QS3
Length = 712
Score = 728 (261.3 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 160/392 (40%), Positives = 233/392 (59%)
Query: 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLP 524
P+ ++ L ++ I+ Y KP P+Q ALP+I+ RD + A+TGSGKT AF+ P
Sbjct: 245 PLNSFADVDLGDVLLGNIKHAKYTKPTPVQKSALPIILKNRDLMACAQTGSGKTAAFLFP 304
Query: 525 MLRHI-----KDQPP-----VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574
++ I + PP V P L++APTREL QQI + KF+ V V +
Sbjct: 305 IISGILLDGAPEAPPAYKPGVPRAACPRALVLAPTRELAQQIFDEANKFSYGSPVSSVVI 364
Query: 575 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF 634
YGG+ V QI+EL RG +I+V T GR++D+L G+++ L ++ YLV+DEADRM DMGF
Sbjct: 365 YGGAEVFHQINELDRGCDILVATTGRLVDLLMR--GRVS-LSKIKYLVLDEADRMLDMGF 421
Query: 635 EPQITRIVQNI-RP---DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ 690
EPQI +I+ P DRQT++FSATFP+Q++ LA L + ++VG ++ITQ
Sbjct: 422 EPQIRQIISEFDMPGCRDRQTLMFSATFPKQIQNLAADFLYNYIFLKVGVVGTT-QNITQ 480
Query: 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750
+E E D+ LL+ L G LIFV ++ CD L L + +P +HG Q
Sbjct: 481 RIEYVVEEDKNSYLLDYLSGLKSDGLCLIFVETKRSCDTLTYFLNQRNFPTTCIHGDLTQ 540
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810
+RE+ + F+S L+AT +A+RGL + + LVINFD P YVHR+GRTGRAG+
Sbjct: 541 PERENALQSFRSFATPFLVATDIASRGLHIGNVNLVINFDLPTDIHIYVHRIGRTGRAGK 600
Query: 811 KGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
KG AI+F +E++ +L+K ++ S Q +PD
Sbjct: 601 KGLAISFFNEKNKPVGAELLKLMKASNQDIPD 632
Score = 42 (19.8 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 336 EPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKS 370
+ + GNN + + R N + P S N +
Sbjct: 84 DDGYRGGNNFRENNSNNNNNSRDNYKSPSFSRNNN 118
>DICTYBASE|DDB_G0293064 [details] [associations]
symbol:DDB_G0293064 species:44689 "Dictyostelium
discoideum" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0293064 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AAFI02000199
RefSeq:XP_629301.1 ProteinModelPortal:Q54CB8
EnsemblProtists:DDB0191757 GeneID:8629024 KEGG:ddi:DDB_G0293064
InParanoid:Q54CB8 OMA:VLYWSAT Uniprot:Q54CB8
Length = 573
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 168/441 (38%), Positives = 261/441 (59%)
Query: 444 EEVSAYRKQLELKIHGKD---VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV 500
+E + K+ E+ I ++ +PKPI T S I + K +EKP P+Q+ P+
Sbjct: 114 QETMDFIKEFEISIKKENNFYLPKPIDTIESVPFQSTIKNFLSK-KFEKPTPVQSLGWPI 172
Query: 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560
+SG D +G++KTGSGKTL+F+LP + HI QP + GP L++APTREL QI+ +
Sbjct: 173 ALSGSDMLGISKTGSGKTLSFILPAIEHILAQPRQSYYPGPSVLVVAPTRELANQINQEA 232
Query: 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620
++ +++ + +YGG+ Q +L R +IVV TPGR+ID + SG +L+ +++
Sbjct: 233 EQYLRLVNIEIATIYGGAPRRSQQLQLSRRPKIVVGTPGRIIDFM-ESGD--LSLKNISF 289
Query: 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
LV+DEADR+ +MGFE QI I +IRPDRQ + +SAT+P++V A K + P+ +Q+G
Sbjct: 290 LVVDEADRLMEMGFEQQIDGIFNSIRPDRQVLYWSATWPKKVSSFAEKHIRTPIRLQIGS 349
Query: 681 RSVV-NKDITQLVEVRP-ESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLL 735
+ NK+I+Q ++ P ++D+ L++ LGE Y EK + LIF +++ D L +
Sbjct: 350 SQLTANKNISQKFKIVPTDADKVDALMDTLGEIYSADEKAQTLIFTMTKKGADTLKHYIQ 409
Query: 736 KHGYPCL--SLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
+G +LHG DQ RE + DFK+ ++++AT VA+RGLD+K + VINF P+
Sbjct: 410 SNGDNVRIDTLHGDVDQNRRERIVQDFKNKRLDIVVATDVASRGLDIKGISHVINFSLPS 469
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISE---EDAKYSPDLVKALELSEQVVPDDLKALADS 850
E YVHR+GRTGRAG G + + +S +D + DL L+ SEQ VP + D
Sbjct: 470 DCETYVHRIGRTGRAGALGTSHSILSNNSLDDMELVGDLTNLLQRSEQEVPSEF---LDI 526
Query: 851 FMAKVNQGLEQAHGTGYGGSG 871
+ Q ++ +G G G G
Sbjct: 527 NAIRNRQNMKGGNGGGRNGGG 547
>UNIPROTKB|I3LDV0 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:TILWVYE EMBL:FP565155
Ensembl:ENSSSCT00000028884 Uniprot:I3LDV0
Length = 667
Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
Identities = 179/436 (41%), Positives = 261/436 (59%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P+ I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 173 GNNCPRHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 232
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 233 AAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 292
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 293 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 348
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 349 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 408
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V ESD+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 409 VGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGY 467
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 468 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 527
Query: 800 HRVGRTGRAGRKGC---AITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAK-V 855
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A K
Sbjct: 528 HRIGRTGRVGNLGLIGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYKGS 587
Query: 856 NQGLEQAHGTGYGGSG 871
++G +++ GG G
Sbjct: 588 SRGRSKSYNRFSGGFG 603
>DICTYBASE|DDB_G0277857 [details] [associations]
symbol:helB2 "putative U5 small nuclear
ribonucleoprotein" species:44689 "Dictyostelium discoideum"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0277857 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0006397
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 GO:GO:0000375 HSSP:P09052 EMBL:X81824
RefSeq:XP_642321.1 ProteinModelPortal:Q54Y81 STRING:Q54Y81
EnsemblProtists:DDB0219950 GeneID:8621527 KEGG:ddi:DDB_G0277857
OMA:DRYRDND Uniprot:Q54Y81
Length = 834
Score = 483 (175.1 bits), Expect = 1.9e-74, Sum P(3) = 1.9e-74
Identities = 92/210 (43%), Positives = 134/210 (63%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K + MT + +++ + G P PI+TW ++ L +I+E IR+L YEKP PIQ
Sbjct: 382 KPLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKPSPIQM 441
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA---GDGPVGLIMAPTREL 552
Q++P+ ++GRD +G+A+TGSGKT AFV+PML +I QP + DGP L+MAPTREL
Sbjct: 442 QSIPISLTGRDILGIAETGSGKTCAFVIPMLIYISKQPRLTKDTEADGPYALVMAPTREL 501
Query: 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612
VQQI + R FA+ G R V + GG + Q ++ +G EI++ TPGR+ D C +
Sbjct: 502 VQQIEKETRNFAQHFGFRVVSLVGGQSIEDQAYQVSKGCEIIIATPGRLND--CLEKRYL 559
Query: 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
L + Y+V+DEAD M D+GFEPQ+T ++
Sbjct: 560 V-LNQCNYIVLDEADMMIDLGFEPQVTSVL 588
Score = 326 (119.8 bits), Expect = 1.9e-74, Sum P(3) = 1.9e-74
Identities = 76/197 (38%), Positives = 113/197 (57%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLEL 707
R T+LFSAT P VE L++K L +P I +G V I Q ++ V+ E+D+ L +L
Sbjct: 616 RTTILFSATMPPLVEKLSKKYLRRPCTITIGEAGKVVDRIRQTVIFVKSENDKKEHLTQL 675
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
+ + I+IFV+ ++ CD + L + LH + Q RE+ + FK +
Sbjct: 676 IKDG-PPPPIIIFVNKKKHCDIIAPVLEECRVSYTILHSGRSQEQREAALEGFKKRKYEV 734
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
LIAT VA+RG+ V + VINFD P + EDY HR+GRTGRAG G A +FI+++D +
Sbjct: 735 LIATGVASRGIHVDGVTHVINFDIPKNIEDYTHRIGRTGRAGSAGLASSFITDKDVEIMY 794
Query: 828 DLVKALELSEQVVPDDL 844
DL + L + +VP +L
Sbjct: 795 DLKQILTSTNNIVPIEL 811
Score = 47 (21.6 bits), Expect = 1.9e-74, Sum P(3) = 1.9e-74
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 351 DRKGDRRSNGEQPKKSSNKSLG 372
DR+ DRR NG + + N G
Sbjct: 189 DRRDDRRDNGRYGRDNDNSGGG 210
Score = 47 (21.6 bits), Expect = 1.9e-74, Sum P(3) = 1.9e-74
Identities = 25/127 (19%), Positives = 50/127 (39%)
Query: 259 DDEEVPQTGKSETDM-DADEEPKPSEN-QVGDAMLVDSDGGSAAPALQIGAAEDE--DID 314
D ++ K +T D + +P++N ++ D D + + +++ ++D
Sbjct: 2 DPPKLTFISKRDTKKKDEVNKEQPTKNLKILDLFSNDEEFSNPTQEEPTNTLQEKLMNVD 61
Query: 315 PLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRI 374
PL+ F + E +K ++ + D DR D R NG + + + G
Sbjct: 62 PLEFFSKGGLKEEQKKERDDHRDDYRDSR-------DRDRDYRDNGGRDRDRDYRDGGGG 114
Query: 375 IPGEDSD 381
G D D
Sbjct: 115 GGGRDRD 121
Score = 40 (19.1 bits), Expect = 1.7e-25, Sum P(3) = 1.7e-25
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 409 TKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTP----EEVSAYRKQLE-LKIHGKDVP 463
T K + +K D+ F+++F I K P +E + R+ LE ++ G + P
Sbjct: 377 THWSKKPLKSMTKRDWHIFKEDFNISTKGGIAPNPIRTWQESNLPREILEAIRQLGYEKP 436
Query: 464 KPIK 467
PI+
Sbjct: 437 SPIQ 440
Score = 38 (18.4 bits), Expect = 1.7e-73, Sum P(3) = 1.7e-73
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 257 DSDDEEVPQTGKSETDMDADEEPKPSENQVG-DAMLVDSDGGSAAPALQIGAAEDEDIDP 315
D+D+ +GK+ +D + P + N + D + D+ S QI D + DP
Sbjct: 203 DNDNSGGGGSGKNSSDKKEEINPVSNNNDIHKDRIKRDTTQFSHKVFEQINNKRDRE-DP 261
>SGD|S000006040 [details] [associations]
symbol:DBP1 "Putative ATP-dependent RNA helicase of the
DEAD-box protein family" species:4932 "Saccharomyces cerevisiae"
[GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0006413
"translational initiation" evidence=IEA;IMP] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000006040 GO:GO:0005524
GO:GO:0005737 GO:GO:0006413 EMBL:BK006949 GO:GO:0003743 EMBL:U43503
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
EMBL:X55993 PIR:S62003 RefSeq:NP_015206.1 ProteinModelPortal:P24784
SMR:P24784 DIP:DIP-2576N IntAct:P24784 MINT:MINT-426870
STRING:P24784 PaxDb:P24784 EnsemblFungi:YPL119C GeneID:855984
KEGG:sce:YPL119C CYGD:YPL119c GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN OrthoDB:EOG4XPTQ4
NextBio:980825 Genevestigator:P24784 GermOnline:YPL119C
Uniprot:P24784
Length = 617
Score = 732 (262.7 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 174/432 (40%), Positives = 255/432 (59%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
GKDVP+PI + L +ME I+ ++ KP P+Q ++P++ GRD + A+TGSGKT
Sbjct: 146 GKDVPEPILDFSSPPLDELLMENIKLASFTKPTPVQKYSIPIVTKGRDLMACAQTGSGKT 205
Query: 519 LAFVLPMLRHI-KDQP-PVA-------AGDG-PVGLIMAPTRELVQQIHSDIRKFAKVMG 568
F+ P+ + + P PV + G P L++APTREL QI + RKF
Sbjct: 206 GGFLFPLFTELFRSGPSPVPEKAQSFYSRKGYPSALVLAPTRELATQIFEEARKFTYRSW 265
Query: 569 VR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627
VR CV VYGG+ + Q+ E+ RG +++V TPGR+ D+L GK++ L + YLV+DEAD
Sbjct: 266 VRPCV-VYGGAPIGNQMREVDRGCDLLVATPGRLNDLL--ERGKVS-LANIKYLVLDEAD 321
Query: 628 RMFDMGFEPQITRIVQNI-RP---DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV 683
RM DMGFEPQI IV+ P +RQT++FSATFP ++ LAR L+ + + VG
Sbjct: 322 RMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGS 381
Query: 684 VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLS 743
+++ITQ + + D+ LL+LL + KG LIFV ++ D L L+ + +
Sbjct: 382 TSENITQRILYVDDMDKKSALLDLLSAEH-KGLTLIFVETKRMADQLTDFLIMQNFKATA 440
Query: 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803
+HG + Q +RE +S FK+NV ++L+AT+VAARGLD+ + VIN+D P+ +DYVHR+G
Sbjct: 441 IHGDRTQAERERALSAFKANVADILVATAVAARGLDIPNVTHVINYDLPSDIDDYVHRIG 500
Query: 804 RTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAH 863
RTGRAG G A +F + + L++ L + Q VP L L+ + ++G
Sbjct: 501 RTGRAGNTGVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLS----RQNSRG----- 551
Query: 864 GTGYGGSGFKFN 875
G GG GF FN
Sbjct: 552 GRTRGGGGF-FN 562
Score = 37 (18.1 bits), Expect = 2.3e-74, Sum P(2) = 2.3e-74
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 343 NNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDY 384
N S G+R NG+ N L + G D DY
Sbjct: 86 NRGGSSNYKSSGNRWVNGKHIPGPKNAKLEAELFGVHDDPDY 127
>WB|WBGene00019245 [details] [associations]
symbol:sacy-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0005737
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0003676 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 HSSP:P10081 KO:K13116
OMA:KDQEERS HOGENOM:HOG000268792 EMBL:FO081567 RefSeq:NP_491962.1
ProteinModelPortal:Q9N5K1 SMR:Q9N5K1 PaxDb:Q9N5K1
EnsemblMetazoa:H27M09.1 GeneID:172413 KEGG:cel:CELE_H27M09.1
UCSC:H27M09.1 CTD:172413 WormBase:H27M09.1 InParanoid:Q9N5K1
NextBio:875413 Uniprot:Q9N5K1
Length = 630
Score = 750 (269.1 bits), Expect = 2.5e-74, P = 2.5e-74
Identities = 175/449 (38%), Positives = 254/449 (56%)
Query: 438 IARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN-YEKPMPIQAQ 496
I R + E+ RK+L + G +P PI ++ + ++E ++K P IQ Q
Sbjct: 160 IRRQSQEDYEIQRKRLGISCEGDHIPPPIGSFLEMKFPKSLLEFMQKQKGIVTPTAIQIQ 219
Query: 497 ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP---PVAAGDGPVGLIMAPTRELV 553
+PV +SGRD IG+A TGSGKT+ FVLP++ +Q P +GP GLI+ P+REL
Sbjct: 220 GIPVALSGRDMIGIASTGSGKTMTFVLPLVMFCLEQEMKLPFMRSEGPFGLIIVPSRELA 279
Query: 554 QQIHSDIRKFAKVMGVRCVP------VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
+QI I + +G +P GG + +Q +++ G IVV TPGR+ D+L
Sbjct: 280 RQIFDLIIEMFDALGKAGLPEMRAGLCIGGVPIGEQAKDVRDGIHIVVATPGRLSDMLTK 339
Query: 608 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667
KI NL YLV+DEADRM DMGFE +I I + RQT+LFSAT PR+++ A+
Sbjct: 340 ---KIINLEVCRYLVLDEADRMLDMGFEDEIKSIFYFFKAQRQTLLFSATMPRKIQFFAK 396
Query: 668 KVLNKPVEIQVGGRSVVNKDITQLVE-VRPESDRFLRLLELLGEWYEKGKILIFVHSQEK 726
L KP+ + VG + ++ Q +E VR E+ + +R+LE L + K+LIF +
Sbjct: 397 SALVKPIVVNVGRAGAASLNVLQELEFVRSEN-KLVRVLECLQK--TSPKVLIFAEKKVD 453
Query: 727 CDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786
D ++ LL G S+HG KDQ+DR + I F+ N ++L+AT VA++GLD + +E V
Sbjct: 454 VDNIYEYLLVKGVEVASIHGGKDQSDRHAGIEAFRKNEKDVLVATDVASKGLDFQGIEHV 513
Query: 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDLK 845
INFD P E+YVHR+GRTGR+GRKG A TFI+++ + DL + L + Q +P+ LK
Sbjct: 514 INFDMPEDIENYVHRIGRTGRSGRKGLATTFINKKSEMSVLSDLKQLLAEAGQELPEFLK 573
Query: 846 ALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
LA G G Y G G +
Sbjct: 574 MLAGDEEGTAPAGTNAEKGCAYCSGLGHR 602
>POMBASE|SPCC63.11 [details] [associations]
symbol:prp28 "U5 snRNP-associated protein Prp28
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000354
"cis assembly of pre-catalytic spliceosome" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPCC63.11
GO:GO:0005524 GO:GO:0005737 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0000354 KO:K12858 HOGENOM:HOG000268796
OMA:PIRNWKE OrthoDB:EOG4KPXK0 PIR:T41512 RefSeq:NP_587984.1
ProteinModelPortal:Q9Y7T7 STRING:Q9Y7T7 EnsemblFungi:SPCC63.11.1
GeneID:2538728 KEGG:spo:SPCC63.11 NextBio:20799913 Uniprot:Q9Y7T7
Length = 662
Score = 463 (168.0 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 91/230 (39%), Positives = 145/230 (63%)
Query: 421 KIDYQ--PFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKI 478
KID+ P+R+ K + M P + ++ + I G D+P P++ W + GL S++
Sbjct: 207 KIDWDDVPWRE------KPLEAMKPRDWRILKEDYNISIKGDDLPNPLRNWEEAGLPSEM 260
Query: 479 METIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538
++ ++K+NY++P IQ A+PV++ +D IG+A+TGSGKT AF++P++ I PP+
Sbjct: 261 LKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLPPLTES 320
Query: 539 D---GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVV 595
+ GP +++APTREL QQI + KFA+ +G RCV V GG +Q ++ +G IVV
Sbjct: 321 NMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQGAHIVV 380
Query: 596 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
TPGR++D L ++ L + TY+VMDEADRM DMGFE + +I+ ++
Sbjct: 381 ATPGRLLDCL---ERRLFVLSQCTYVVMDEADRMLDMGFEDDVNKILSSL 427
Score = 343 (125.8 bits), Expect = 2.9e-74, Sum P(2) = 2.9e-74
Identities = 73/199 (36%), Positives = 116/199 (58%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE-VRPESDRFLRLLEL 707
RQT++FSAT P +V LA+ L +PV + +G + Q VE + +S ++ R+ E+
Sbjct: 450 RQTIMFSATLPPRVANLAKSYLIEPVMLTIGNIGQAVDRVEQRVEMISDDSKKWRRVEEI 509
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
L I+IFV+ + +A+ + L G+ ++LHG+K Q RE I ++ ++
Sbjct: 510 LESNRFSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADI 569
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
L+AT +A RG+D+ + LV+N++ EDY HR+GRTGRAG+ G AITF+ ED
Sbjct: 570 LVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGRTGRAGKSGTAITFLGPEDTDVYY 629
Query: 828 DLVKALELSEQV-VPDDLK 845
DL L S + +PD+L+
Sbjct: 630 DLRVLLSRSAKAHIPDELR 648
>UNIPROTKB|B4DXX7 [details] [associations]
symbol:DDX3Y "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG015893
UniGene:Hs.99120 HGNC:HGNC:2699 EMBL:AC004474 EMBL:AK302172
IPI:IPI00646152 SMR:B4DXX7 STRING:B4DXX7 Ensembl:ENST00000537441
UCSC:uc011nar.1 Uniprot:B4DXX7
Length = 657
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 172/409 (42%), Positives = 248/409 (60%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+ + + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 167 GSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKT 226
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 227 AAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 286
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 287 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 342
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 343 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 402
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V + D+ LL++LG L+FV +++ D+L D L H GY
Sbjct: 403 VGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSL-EDFLYHEGY 461
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ + VINFD P+ E+YV
Sbjct: 462 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYV 521
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E++ + DL+ L ++Q VP L+ +A
Sbjct: 522 HRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMA 570
>UNIPROTKB|O15523 [details] [associations]
symbol:DDX3Y "ATP-dependent RNA helicase DDX3Y"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 Orphanet:1646
HOGENOM:HOG000268804 KO:K11594 HOVERGEN:HBG015893 HPA:HPA001648
HPA:HPA005631 OrthoDB:EOG47D9FV EMBL:AF000985 EMBL:AF000984
EMBL:BC034942 IPI:IPI00293616 RefSeq:NP_001116137.1
RefSeq:NP_004651.2 UniGene:Hs.99120 ProteinModelPortal:O15523
SMR:O15523 IntAct:O15523 MINT:MINT-2999090 STRING:O15523
PhosphoSite:O15523 PaxDb:O15523 PRIDE:O15523
Ensembl:ENST00000336079 Ensembl:ENST00000360160 GeneID:8653
KEGG:hsa:8653 UCSC:uc004fsu.1 CTD:8653 GeneCards:GC0YP015016
HGNC:HGNC:2699 MIM:400010 neXtProt:NX_O15523 PharmGKB:PA27168
InParanoid:O15523 OMA:GNWANAN PhylomeDB:O15523 GenomeRNAi:8653
NextBio:32449 ArrayExpress:O15523 Bgee:O15523 CleanEx:HS_DDX3Y
Genevestigator:O15523 GermOnline:ENSG00000067048 Uniprot:O15523
Length = 660
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 172/409 (42%), Positives = 248/409 (60%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+ + + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 170 GSNCPPHIENFSDIDMGEIIMGNIELTRYTRPTPVQKHAIPIIKGKRDLMACAQTGSGKT 229
Query: 519 LAFVLPMLRHIKDQPPVAA-----GDG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 230 AAFLLPILSQIYTDGPGEALKAVKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 289
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 290 RSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 345
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 346 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 405
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V + D+ LL++LG L+FV +++ D+L D L H GY
Sbjct: 406 VGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSL-EDFLYHEGY 464
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ + VINFD P+ E+YV
Sbjct: 465 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVRHVINFDLPSDIEEYV 524
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E++ + DL+ L ++Q VP L+ +A
Sbjct: 525 HRIGRTGRVGNLGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMA 573
>MGI|MGI:103064 [details] [associations]
symbol:Ddx3x "DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3,
X-linked" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0005741
"mitochondrial outer membrane" evidence=IEA] [GO:0006200 "ATP
catabolic process" evidence=IEA;ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0007059 "chromosome segregation" evidence=ISO]
[GO:0007243 "intracellular protein kinase cascade" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008152
"metabolic process" evidence=IEA] [GO:0008190 "eukaryotic
initiation factor 4E binding" evidence=ISO] [GO:0008625 "extrinsic
apoptotic signaling pathway via death domain receptors"
evidence=ISO] [GO:0009615 "response to virus" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016020
"membrane" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0031333 "negative regulation of protein complex assembly"
evidence=ISO] [GO:0031369 "translation initiation factor binding"
evidence=ISO] [GO:0034063 "stress granule assembly" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0042256 "mature ribosome
assembly" evidence=ISO] [GO:0043024 "ribosomal small subunit
binding" evidence=ISO] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0043154 "negative
regulation of cysteine-type endopeptidase activity involved in
apoptotic process" evidence=ISO] [GO:0043280 "positive regulation
of cysteine-type endopeptidase activity involved in apoptotic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=ISO] [GO:0045727 "positive regulation of translation"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0045948
"positive regulation of translational initiation" evidence=ISO]
[GO:0048027 "mRNA 5'-UTR binding" evidence=ISO] [GO:0071243
"cellular response to arsenic-containing substance" evidence=ISO]
[GO:0071470 "cellular response to osmotic stress" evidence=ISO]
[GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO]
[GO:1900087 "positive regulation of G1/S transition of mitotic cell
cycle" evidence=ISO] [GO:2001243 "negative regulation of intrinsic
apoptotic signaling pathway" evidence=ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:103064
GO:GO:0005524 GO:GO:0005634 GO:GO:0043066 GO:GO:0043154
GO:GO:0030307 GO:GO:0007059 GO:GO:0005741 GO:GO:0017148
GO:GO:0003677 GO:GO:0031333 GO:GO:0016607 GO:GO:0045944
GO:GO:0045087 GO:GO:0007243 GO:GO:0006351 GO:GO:0009615
GO:GO:0043065 GO:GO:0048027 GO:GO:0043280 GO:GO:0071470
GO:GO:0004003 GO:GO:0097193 GO:GO:1900087 GO:GO:0008134
GO:GO:0071243 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0034063 GO:GO:2001243 GO:GO:0008625
GO:GO:0045948 GO:GO:0004004 GO:GO:0042256 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0008143
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804 KO:K11594
HOVERGEN:HBG015893 CTD:1654 OrthoDB:EOG47D9FV ChiTaRS:DDX3X
GO:GO:0008190 GO:GO:0043024 GO:GO:0035613 EMBL:Z38117 EMBL:L25126
IPI:IPI00230035 PIR:I84741 RefSeq:NP_034158.1 UniGene:Mm.289662
ProteinModelPortal:Q62167 SMR:Q62167 IntAct:Q62167
MINT:MINT-1870173 STRING:Q62167 PhosphoSite:Q62167
REPRODUCTION-2DPAGE:Q62167 PaxDb:Q62167 PRIDE:Q62167
Ensembl:ENSMUST00000000804 GeneID:13205 KEGG:mmu:13205
InParanoid:Q62167 NextBio:283364 Bgee:Q62167 CleanEx:MM_ERH
Genevestigator:Q62167 GermOnline:ENSMUSG00000000787 Uniprot:Q62167
Length = 662
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 174/409 (42%), Positives = 250/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 519 LAFVLPMLRHI-KDQPPVAAG----DG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I D P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 232 AAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 292 RSRVRPCV-VYGGAEIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 347
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V E D+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 408 VGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGY 466
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 526
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 527 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 575
>RGD|1564771 [details] [associations]
symbol:Ddx3x "DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,
X-linked" species:10116 "Rattus norvegicus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1564771 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:KYERGGN OrthoDB:EOG47D9FV IPI:IPI00362534 PhosphoSite:D4ADE8
PRIDE:D4ADE8 Ensembl:ENSRNOT00000039551 UCSC:RGD:1564771
Uniprot:D4ADE8
Length = 662
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 174/409 (42%), Positives = 250/409 (61%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 172 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 231
Query: 519 LAFVLPMLRHI-KDQPPVAAG----DG--------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I D P A +G P+ L++APTREL QI+ + RKF+
Sbjct: 232 AAFLLPILSQIYADGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 291
Query: 566 VMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624
VR CV VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+D
Sbjct: 292 RSRVRPCV-VYGGAEIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLD 347
Query: 625 EADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
EADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 348 EADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 407
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GY 739
+++ITQ V E D+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 408 VGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGY 466
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YV
Sbjct: 467 ACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYV 526
Query: 800 HRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
HR+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 527 HRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 575
>SGD|S000003046 [details] [associations]
symbol:DBP3 "RNA-Dependent ATPase, member of DExD/H-box
family" species:4932 "Saccharomyces cerevisiae" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IDA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0042254 "ribosome biogenesis" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000464
"endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA from
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000003046 GO:GO:0005524
GO:GO:0005730 EMBL:BK006941 GO:GO:0003723 GO:GO:0030687
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S EMBL:M80437
EMBL:Z72600 PIR:S30805 RefSeq:NP_011437.3 RefSeq:NP_011442.3
ProteinModelPortal:P20447 SMR:P20447 DIP:DIP-2668N IntAct:P20447
MINT:MINT-1164200 STRING:P20447 PaxDb:P20447 PeptideAtlas:P20447
EnsemblFungi:YGL078C GeneID:852802 GeneID:852806 KEGG:sce:YGL073W
KEGG:sce:YGL078C CYGD:YGL078c GeneTree:ENSGT00680000100003
KO:K09419 OMA:EEEWPEK NextBio:972321 Genevestigator:P20447
GermOnline:YGL078C GO:GO:0000464 Uniprot:P20447
Length = 523
Score = 725 (260.3 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 171/456 (37%), Positives = 266/456 (58%)
Query: 404 KRVKKTKAEKLSIVDHSKIDYQP-----FRKNFYIEVKEIARMTPEEVSAYRKQLELKIH 458
K K+ K EK V + + +P FY++ + + + ++ Y K+ E+ +
Sbjct: 44 KHKKEKKGEKEVEVPEKESEKKPEPTSAVASEFYVQSEALTSLPQSDIDEYFKENEIAVE 103
Query: 459 GK-DVP-KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSG 516
D+ +P+ ++ L S I I K + KP PIQA A P ++SG+D +GVA+TGSG
Sbjct: 104 DSLDLALRPLLSFDYLSLDSSIQAEISK--FPKPTPIQAVAWPYLLSGKDVVGVAETGSG 161
Query: 517 KTLAFVLPMLRHI-KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575
KT AF +P + H+ DQ G L+++PTREL QI+ ++ +G++C VY
Sbjct: 162 KTFAFGVPAISHLMNDQKK----RGIQVLVISPTRELASQIYDNLIVLTDKVGMQCCCVY 217
Query: 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE 635
GG +Q +LK+ +++VV TPGR++D+L G + +L +V YLV+DEADRM + GFE
Sbjct: 218 GGVPKDEQRIQLKK-SQVVVATPGRLLDLL--QEGSV-DLSQVNYLVLDEADRMLEKGFE 273
Query: 636 PQITRIVQNIRPD-RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLV 692
I I++ RQT++F+AT+P++V LA +N P+++ +G NK ITQ+V
Sbjct: 274 EDIKNIIRETDASKRQTLMFTATWPKEVRELASTFMNNPIKVSIGNTDQLTANKRITQIV 333
Query: 693 EVRPESDRFLRLLELLGEWY---EKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAK 748
EV + +LLELL +++ +K K+LIF +++ + R+L +GY ++HG
Sbjct: 334 EVVDPRGKERKLLELLKKYHSGPKKNEKVLIFALYKKEAARVERNLKYNGYNVAAIHGDL 393
Query: 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808
Q R +++FKS NLL+AT VAARGLD+ ++ VIN P EDYVHR+GRTGRA
Sbjct: 394 SQQQRTQALNEFKSGKSNLLLATDVAARGLDIPNVKTVINLTFPLTVEDYVHRIGRTGRA 453
Query: 809 GRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
G+ G A T +E++ + LV L + Q VP+DL
Sbjct: 454 GQTGTAHTLFTEQEKHLAGGLVNVLNGANQPVPEDL 489
Score = 40 (19.1 bits), Expect = 5.9e-74, Sum P(2) = 5.9e-74
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 323 MVLPEV-EKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRI---IPGE 378
M E+ +K + V+ + + K D+K + ++ KK + G +P +
Sbjct: 1 MTKEEIADKKRKVVDEEVIEKKKSKKHKKDKKDKKEKKDKKHKKHKKEKKGEKEVEVPEK 60
Query: 379 DSD 381
+S+
Sbjct: 61 ESE 63
>TAIR|locus:2119176 [details] [associations]
symbol:AT4G33370 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0008270 EMBL:AL035678 EMBL:AL161583
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13116 HOGENOM:HOG000268792 ProtClustDB:CLSN2685494
IPI:IPI00545227 PIR:T05988 RefSeq:NP_195063.1 UniGene:At.65448
ProteinModelPortal:Q9SZB4 SMR:Q9SZB4 PaxDb:Q9SZB4 PRIDE:Q9SZB4
EnsemblPlants:AT4G33370.1 GeneID:829474 KEGG:ath:AT4G33370
GeneFarm:1022 TAIR:At4g33370 InParanoid:Q9SZB4 OMA:MEETETI
PhylomeDB:Q9SZB4 Genevestigator:Q9SZB4 GermOnline:AT4G33370
Uniprot:Q9SZB4
Length = 542
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 161/420 (38%), Positives = 250/420 (59%)
Query: 438 IARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQA 497
+ +M+ +++ RKQ + ++G+D+P PIK + S ++ ++ P PIQ Q
Sbjct: 68 VRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQG 127
Query: 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPML-RHIKDQ--PPVAAGDGPVGLIMAPTRELVQ 554
LPV++SGRD IG+A TGSGKTL FVLPM+ ++++ P+AAG+GP+ L++ P+REL +
Sbjct: 128 LPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAK 187
Query: 555 QIHSDIRKFAKVM---G---VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
Q + + +F + G +R + GG + Q+ +K+G IVV TPGR+ DIL
Sbjct: 188 QTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVATPGRLKDILAK- 246
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668
K +L L +DEADR+ D+GFE I + + + RQT+LFSAT P +++I A
Sbjct: 247 --KKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATS 304
Query: 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCD 728
L KPV + VG N D+ Q VE + + + LLE L + +LIF ++ D
Sbjct: 305 ALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQK--TTPPVLIFCENKADVD 362
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
+ LL G +++HG KDQ DR+ IS FK+ ++L+AT VA++GLD +++ VIN
Sbjct: 363 DIHEYLLLKGVEAVAIHGGKDQEDRDYAISLFKAGKKDVLVATDVASKGLDFPDIQHVIN 422
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP-DLVKALELSEQVVPDDLKAL 847
+D P E+YVHR+GRTGR G+ G A TFI++ ++ + DL L+ ++Q +P L L
Sbjct: 423 YDMPGEIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAEL 482
>ASPGD|ASPL0000051195 [details] [associations]
symbol:AN1634 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 EMBL:BN001307
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000026 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:P09052
HOGENOM:HOG000268796 OMA:PIRNWKE RefSeq:XP_659238.1
ProteinModelPortal:Q5BCU6 EnsemblFungi:CADANIAT00008272
GeneID:2874876 KEGG:ani:AN1634.2 OrthoDB:EOG4KPXK0 Uniprot:Q5BCU6
Length = 782
Score = 437 (158.9 bits), Expect = 6.6e-74, Sum P(3) = 6.6e-74
Identities = 86/237 (36%), Positives = 138/237 (58%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K++ M + +++ + G VP P+++W ++GL +++E + ++ Y++P PIQ
Sbjct: 315 KKLEHMRERDWRIFKEDFNIATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQR 374
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-----AAGDGPVGLIMAPTR 550
A+P+ M RD IGVA TGSGKT AF+LP+L +I + P + DGP +++APTR
Sbjct: 375 AAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTR 434
Query: 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG 610
EL QQI + +KF + +G V + GG +Q L+ G EI++ TPGR++D C
Sbjct: 435 ELAQQIEIEAKKFTEPLGFNVVSIVGGHSFEEQAYSLRNGAEIIIATPGRLVD--CIERR 492
Query: 611 KITNLRRVTYLVMDEADRMFDMGFEPQITRI-----VQNIRPDRQTVLFSATFPRQV 662
+ L + Y++MDEADRM D+GFE + +I V N +PD + S+ R +
Sbjct: 493 MLV-LSQCCYVIMDEADRMIDLGFEEPVNKILDALPVTNEKPDTEEAEDSSAMSRHL 548
Score = 379 (138.5 bits), Expect = 6.6e-74, Sum P(3) = 6.6e-74
Identities = 85/228 (37%), Positives = 135/228 (59%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE-VRPESDRFLRLLEL 707
RQT++++AT P VE +ARK L +P + +G + Q VE + E R RL E+
Sbjct: 555 RQTMMYTATMPTAVERIARKYLRRPAIVTIGSAGEAVDTVEQRVEMIAGEDKRKKRLGEI 614
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
L + I++FV+ + CDA+ R++ + G+ ++LHG+K Q RE+ ++ ++ ++
Sbjct: 615 LSSGDFRPPIIVFVNIKRNCDAIAREIKQWGFSSVTLHGSKTQEQREAALASVRNGSTDV 674
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
L+AT +A RG+DV ++ LVINF+ E Y HR+GRTGRAG+ G AITF+ EDA
Sbjct: 675 LVATDLAGRGIDVPDVSLVINFNMATSIESYTHRIGRTGRAGKSGVAITFLGNEDADVMY 734
Query: 828 DLVKALELSE-QVVPDDLKALADSFMAKVNQG----LEQAHG-TGYGG 869
DL + L S VP++L+ ++ +K +G +E+A G G GG
Sbjct: 735 DLKQMLIKSPISRVPEELRK-HEAAQSKPTRGAGKKIEEASGFAGKGG 781
Score = 43 (20.2 bits), Expect = 6.6e-74, Sum P(3) = 6.6e-74
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 343 NNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDY 384
N+ + K D+K D+R N E + + + G D S++
Sbjct: 171 NDSGTTKSDKKVDKRFNEEDEAAAQAALIKQRYMGADQTSNF 212
>UNIPROTKB|Q86TM3 [details] [associations]
symbol:DDX53 "Probable ATP-dependent RNA helicase DDX53"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR011545
Pfam:PF00013 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50084 PROSITE:PS51194 SMART:SM00322 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268804
HOVERGEN:HBG015893 OrthoDB:EOG43BMNQ EMBL:AY039237 EMBL:BC051703
EMBL:BC067878 IPI:IPI00328813 PIR:JC7831 RefSeq:NP_874358.2
UniGene:Hs.434416 PDB:3IUY PDBsum:3IUY ProteinModelPortal:Q86TM3
SMR:Q86TM3 STRING:Q86TM3 PhosphoSite:Q86TM3 DMDM:143811384
PaxDb:Q86TM3 PRIDE:Q86TM3 Ensembl:ENST00000327968 GeneID:168400
KEGG:hsa:168400 UCSC:uc004daj.3 CTD:168400 GeneCards:GC0XP023018
HGNC:HGNC:20083 HPA:HPA003186 neXtProt:NX_Q86TM3
PharmGKB:PA134863598 InParanoid:Q86TM3 OMA:GLKSICI
EvolutionaryTrace:Q86TM3 GenomeRNAi:168400 NextBio:88718
Bgee:Q86TM3 CleanEx:HS_DDX53 Genevestigator:Q86TM3
GermOnline:ENSG00000184735 Uniprot:Q86TM3
Length = 631
Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
Identities = 164/445 (36%), Positives = 262/445 (58%)
Query: 423 DYQPFRKNFYIEVKEIARMTPEEVSAYRKQL------ELKIHGKD-VPKPIKTWHQTGLT 475
D P +KNFYIE K + M+ +V +RK+ +LK K +PKP +
Sbjct: 170 DLPPVKKNFYIESKATSCMSEMQVINWRKENFNITCDDLKSGEKRLIPKPTCRFKDAFQQ 229
Query: 476 -SKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP- 533
++++I ++ KP PIQ+QA P+I+ G D I VA+TG+GKTL++++P H+ QP
Sbjct: 230 YPDLLKSIIRVGIVKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 289
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
+GP L++ PTREL + ++ K++ G++ + +YGG QI ++ +G +I
Sbjct: 290 SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDI 348
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
++ TPGR+ D+ + NLR +TYLV+DEAD+M DM FEPQI +I+ ++RPDRQTV+
Sbjct: 349 IIATPGRLNDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVM 405
Query: 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD-ITQLVEVRPESDRFLRLLELLGEWY 712
SAT+P V LA L P+ + VG ++V + + Q + V E ++ E +
Sbjct: 406 TSATWPDTVRQLALSYLKDPMIVYVGNLNLVAVNTVKQNIIVTTEKEKRALTQEFVENMS 465
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
K+++FV + D L D G SLHG +Q+D+E + DFKS +LI T
Sbjct: 466 PNDKVIMFVSQKHIADDLSSDFNIQGISAESLHGNSEQSDQERAVEDFKSGNIKILITTD 525
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832
+ +RGLD+ ++ V N+D P + + YVHRVG GR G+ G ++T I++ D+K + +L+K
Sbjct: 526 IVSRGLDLNDVTHVYNYDFPRNIDVYVHRVGYIGRTGKTGTSVTLITQRDSKMAGELIKI 585
Query: 833 LELSEQVVPDDLKALADSFMAKVNQ 857
L+ + Q VP+DL +A+ + K+NQ
Sbjct: 586 LDRANQSVPEDLVVMAEQY--KLNQ 608
>CGD|CAL0004832 [details] [associations]
symbol:orf19.7392 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0033592 "RNA strand annealing activity"
evidence=IEA] [GO:0006413 "translational initiation" evidence=IEA]
[GO:0071470 "cellular response to osmotic stress" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IEA] [GO:2000765 "regulation of cytoplasmic translation"
evidence=IEA] [GO:0031047 "gene silencing by RNA" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0004832 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:AACQ01000066 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K11594 RefSeq:XP_716633.1
ProteinModelPortal:Q5A4E2 SMR:Q5A4E2 PRIDE:Q5A4E2 GeneID:3641752
KEGG:cal:CaO19.7392 Uniprot:Q5A4E2
Length = 672
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 163/421 (38%), Positives = 250/421 (59%)
Query: 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAK 512
+ ++ G VP+PI ++ L ++E I+ + KP P+Q ++P++ +GRD + A+
Sbjct: 172 IPVEASGDKVPEPITSFTAPPLDELLVENIQLSRFTKPTPVQKYSVPIVAAGRDLMACAQ 231
Query: 513 TGSGKTLAFVLPMLR--HIKDQPPVAAGDG--------PVGLIMAPTRELVQQIHSDIRK 562
TGSGKT F+ P+L ++K PV +G P L+MAPTRELV QI+ + +K
Sbjct: 232 TGSGKTGGFLFPVLSESYMKGPAPVPESNGAFSSHKVYPTILVMAPTRELVSQIYEESKK 291
Query: 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622
F+ VR VYGG+ + QQ+ + RG +++V TPGR+ D+L GK++ L + YLV
Sbjct: 292 FSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLL--DRGKVS-LANIRYLV 348
Query: 623 MDEADRMFDMGFEPQITRIVQNI-RP---DRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+DEADRM DMGFEPQI IV+ P DRQT++FSATFPR +++LAR L V + V
Sbjct: 349 LDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSV 408
Query: 679 GGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG 738
G +++ITQ + + ++ +L+LL E G ++F ++ D L L G
Sbjct: 409 GRVGSTSENITQKILYVEDDEKKSVILDLLSA-NENGLTIVFTETKRMADNLADYLYDQG 467
Query: 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDY 798
+P ++HG + Q +RE ++ FK+ +L+AT+VAARGLD+ + VIN+D P+ +DY
Sbjct: 468 FPATAIHGDRSQYEREKALAAFKNGAAPILVATAVAARGLDIPNVSHVINYDLPSDIDDY 527
Query: 799 VHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA-DSFMAKVNQ 857
VHR+GRTGRAG G A F + + L++ L + Q VPD L +A + K+ +
Sbjct: 528 VHRIGRTGRAGNVGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTKIAREGAFGKMTR 587
Query: 858 G 858
G
Sbjct: 588 G 588
>POMBASE|SPCC1795.11 [details] [associations]
symbol:sum3 "translation initiation RNA helicase Sum3"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=IMP] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0031047
"gene silencing by RNA" evidence=IDA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IGI] [GO:0071470
"cellular response to osmotic stress" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPCC1795.11 GO:GO:0005829 GO:GO:0005524
GO:GO:0007346 GO:GO:0051301 GO:GO:0007067 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0071470 GO:GO:0010628 GO:GO:0031047
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0031137 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0002183 HOGENOM:HOG000268804 KO:K11594 OrthoDB:EOG4XPTQ4
OMA:KYERGGN EMBL:AF025536 EMBL:AF084222 EMBL:AB012389 EMBL:AJ237697
EMBL:AB027871 PIR:T43543 RefSeq:NP_588033.1
ProteinModelPortal:O13370 SMR:O13370 IntAct:O13370
MINT:MINT-4666622 STRING:O13370 PRIDE:O13370
EnsemblFungi:SPCC1795.11.1 GeneID:2538689 KEGG:spo:SPCC1795.11
NextBio:20799875 Uniprot:O13370
Length = 636
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 167/439 (38%), Positives = 257/439 (58%)
Query: 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAK 512
+ +++ G D+ +P+ + L S +++ I+ Y +P P+Q ++P++ SGRD + A+
Sbjct: 156 IPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQ 214
Query: 513 TGSGKTLAFVLPMLRHIKDQPPVA------AGDG-------PVGLIMAPTRELVQQIHSD 559
TGSGKT F+ P+L D+ P A AG G P LI+APTRELV QIH +
Sbjct: 215 TGSGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEE 274
Query: 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619
RKF VR VYGG+ + QI ++ +G +++ TPGR++D++ G+I+ L +
Sbjct: 275 SRKFCYRSWVRPCAVYGGADIRAQIRQIDQGCDLLSATPGRLVDLI--DRGRIS-LANIK 331
Query: 620 YLVMDEADRMFDMGFEPQITRIVQNIR----PDRQTVLFSATFPRQVEILARKVLNKPVE 675
+LV+DEADRM DMGFEPQI IV+ +RQT++FSATFPR +++LAR L V
Sbjct: 332 FLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVF 391
Query: 676 IQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL 735
+ VG +++ITQ V +S++ LL++L +G LIFV ++ D L LL
Sbjct: 392 LSVGRVGSTSENITQKVVHVEDSEKRSYLLDILHTLPPEGLTLIFVETKRMADTLTDYLL 451
Query: 736 KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHY 795
+P S+HG + Q +RE + F+S ++++AT+VA+RGLD+ + VIN+D P
Sbjct: 452 NSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDI 511
Query: 796 EDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA--DSFMA 853
+DYVHR+GRTGRAG G A+ F + + + +L++ L+ + Q P L A+A SF
Sbjct: 512 DDYVHRIGRTGRAGNTGQAVAFFNRNNKGIAKELIELLQEANQECPSFLIAMARESSFGG 571
Query: 854 KVNQGLEQAHGTGYGGSGF 872
G G G GG+ +
Sbjct: 572 NGRGGRYSGRG-GRGGNAY 589
>UNIPROTKB|F1NAH6 [details] [associations]
symbol:LOC100859810 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0035458 "cellular response to interferon-beta" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051607 "defense response
to virus" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005783 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0045944 GO:GO:0035458
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 OMA:KDQEERS EMBL:AADN02028748
EMBL:AADN02028749 EMBL:AADN02068652 IPI:IPI00576331
Ensembl:ENSGALT00000004794 Uniprot:F1NAH6
Length = 607
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 173/470 (36%), Positives = 262/470 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + I M+ + RK+ + + G+ +P PIK++ +
Sbjct: 123 MSVKEMAKGITYDDPIKTSWRAPRYILAMSEARHNRVRKKYHILVEGEGIPPPIKSFKEM 182
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
+ I+ ++K ++P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 183 KFPAAILRGLKKKGIQQPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 242
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H I + +++ +RC GG V +Q
Sbjct: 243 EKRLPFSKREGPYGLIICPSRELARQTHGIIEYYCRLLQEDSLPPLRCALCIGGMSVKEQ 302
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ +K G ++V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 303 METIKHGVHMMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 359
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KP+ I VG + D+ Q VE E + +
Sbjct: 360 YFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVGRAGAASLDVVQEVEYVKEEAKMVY 419
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 420 LLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFRDG 477
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 478 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 537
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKAL--ADSFMAKVN--QGLEQAHGTGY 867
DL KAL L ++Q VP L+ L D M + +G G G+
Sbjct: 538 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDETMLDIGGERGCAFCGGLGH 586
>RGD|1559513 [details] [associations]
symbol:RGD1559513 "similar to DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:10116 "Rattus norvegicus" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 RGD:1559513 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4CVG6K OMA:MEETETI
IPI:IPI00958592 Ensembl:ENSRNOT00000033492 UCSC:RGD:1559513
NextBio:667517 Uniprot:D4ADJ9
Length = 621
Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
Identities = 174/473 (36%), Positives = 263/473 (55%)
Query: 414 LSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQT 472
+S+ + +K I Y K + + + M+ E RK+ + + G +P PIK++ +
Sbjct: 126 MSVKEMAKGITYDDPIKTSWTPPRYVLSMSEERHERVRKKYHILVEGDGIPPPIKSFKEM 185
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
L + I+ ++K P PIQ Q +P I+SGRD IG+A TGSGKTL F LP++ +Q
Sbjct: 186 KLPAAILRGLKKKGILHPTPIQIQGIPTILSGRDMIGIAFTGSGKTLVFTLPVIMFCLEQ 245
Query: 533 P---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG------VRCVPVYGGSGVAQQ 583
P + +GP GLI+ P+REL +Q H + + +++ + C GG + +Q
Sbjct: 246 EKRLPFSKREGPYGLIICPSRELARQTHGILEYYCRLLQEDSSPLLHCALCIGGVSLKEQ 305
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+ ++ G I+V TPGR++D+L K+ +L YL +DEADRM DMGFE I I
Sbjct: 306 METMRHGVHIMVATPGRLMDLLQK---KMVSLDICRYLALDEADRMIDMGFEGDIRTIFS 362
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703
+ RQT+LFSAT P++++ A+ L KPV I VG + D+ Q VE E + +
Sbjct: 363 YFKGQRQTLLFSATMPKKIQNFAKSALVKPVTINVGRAGAASLDVIQEVEYVKEEAKMVY 422
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LLE L + +LIF + DA+ LL G +++HG KDQ +R I F+
Sbjct: 423 LLECLQK--TPPPVLIFAKKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG 480
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-D 822
++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTGR+G G A TFI++ D
Sbjct: 481 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGRSGNTGIATTFINKACD 540
Query: 823 AKYSPDLVKALEL-SEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFK 873
DL KAL L ++Q VP L+ L + ++ G EQ G + GG G +
Sbjct: 541 ESVLMDL-KALLLEAKQKVPPVLQVLHCGDESMLDIGGEQ--GCAFCGGLGHR 590
>FB|FBgn0015331 [details] [associations]
symbol:abs "abstrakt" species:7227 "Drosophila melanogaster"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=NAS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0030010
"establishment of cell polarity" evidence=NAS] [GO:0007399 "nervous
system development" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0009653 "anatomical structure morphogenesis"
evidence=NAS] [GO:0006915 "apoptotic process" evidence=NAS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0004386 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 KO:K13116 EMBL:AF212866 EMBL:AF187729
EMBL:AY051752 RefSeq:NP_524220.1 UniGene:Dm.3300
ProteinModelPortal:Q9V3C0 SMR:Q9V3C0 DIP:DIP-21861N IntAct:Q9V3C0
MINT:MINT-341079 STRING:Q9V3C0 PaxDb:Q9V3C0 PRIDE:Q9V3C0
EnsemblMetazoa:FBtr0078967 GeneID:40530 KEGG:dme:Dmel_CG14637
UCSC:CG14637-RA CTD:40530 FlyBase:FBgn0015331 InParanoid:Q9V3C0
OMA:KDQEERS OrthoDB:EOG4KWH7Z PhylomeDB:Q9V3C0 GenomeRNAi:40530
NextBio:819209 Bgee:Q9V3C0 GermOnline:CG14637 Uniprot:Q9V3C0
Length = 619
Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
Identities = 174/483 (36%), Positives = 265/483 (54%)
Query: 403 MKRVKKTKAEKLSIVDHSK-IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD 461
M+ + + KA + + + +K I Y+ K + + I M+ EE A R +L + + G+
Sbjct: 113 MESIAQQKA-LMGVAELAKGIQYEQPIKTAWKPPRYIREMSEEEREAVRHELRILVEGET 171
Query: 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
PI+++ + I+ + + P PIQ Q LP +++GRD IG+A TGSGKTL F
Sbjct: 172 PSPPIRSFREMKFPKGILNGLAAKGIKNPTPIQVQGLPTVLAGRDLIGIAFTGSGKTLVF 231
Query: 522 VLPMLRHIKDQP---PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM---G---VRCV 572
VLP++ +Q P +GP GLI+ P+REL +Q H I+ ++K + G +R
Sbjct: 232 VLPVIMFALEQEYSLPFERNEGPYGLIICPSRELAKQTHEIIQHYSKHLQACGMPEIRSC 291
Query: 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632
GG V++ + + RG IVV TPGR++D+L KI L YL MDEADRM DM
Sbjct: 292 LAMGGLPVSEALDVISRGVHIVVATPGRLMDML---DKKILTLDMCRYLCMDEADRMIDM 348
Query: 633 GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV 692
GFE + I + RQT+LFSAT P++++ AR L KPV I VG + ++TQ V
Sbjct: 349 GFEEDVRTIFSFFKGQRQTLLFSATMPKKIQNFARSALVKPVTINVGRAGAASMNVTQQV 408
Query: 693 EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
E + + + LL+ L + +LIF ++ D + LL G +++HG KDQ +
Sbjct: 409 EYVKQEAKVVYLLDCLQK--TAPPVLIFAEKKQDVDCIHEYLLLKGVEAVAIHGGKDQEE 466
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
R + ++ ++L+AT VA++GLD ++ VIN+D P+ E+YVHR+GRTGR+ KG
Sbjct: 467 RSRAVDAYRVGKKDVLVATDVASKGLDFPNVQHVINYDMPDDIENYVHRIGRTGRSNTKG 526
Query: 813 CAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGS 870
A T I++ + DL L +Q VPD L LA + + L +HG Y GG
Sbjct: 527 LATTLINKTTEQSVLLDLKHLLIEGKQEVPDFLDELAPETEHQ-HLDLGDSHGCTYCGGL 585
Query: 871 GFK 873
G +
Sbjct: 586 GHR 588
>UNIPROTKB|F1MYC6 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0032880 "regulation of protein localization"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000237 "leptotene" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0048471
GO:GO:0032880 GO:GO:0007283 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 IPI:IPI00689085 UniGene:Bt.35994
OMA:RDAGESN GO:GO:0000237 EMBL:DAAA02050339 EMBL:DAAA02050337
EMBL:DAAA02050338 EMBL:JX437185 Ensembl:ENSBTAT00000011682
Uniprot:F1MYC6
Length = 729
Score = 697 (250.4 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 155/407 (38%), Positives = 247/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P+I GRD + A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI+ + RKF+ VR
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++D++ G + LR+V YLV+DEADRM
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVI---GKEKIGLRQVKYLVLDEADRML 454
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT++FSATFP +++ LA + L + + VG
Sbjct: 455 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 514
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q +++V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 515 RDVQQTILQVGQYSKRE-KLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 572
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 573 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 632
Query: 805 TGRAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F E D++ + LVK L ++Q VP L+ +A S
Sbjct: 633 TGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFS 679
Score = 46 (21.3 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 339 FTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYG 385
+ DGN+ E+ R+G R S + GR P D + D G
Sbjct: 135 YQDGNDSEALGSSRRGGRGSF-----RGCRGGFGRGSPNSDYEQDEG 176
Score = 41 (19.5 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 309 EDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNV--ESKKMDRKGDRRSNGEQPKKS 366
ED + + + ++S V P EK + + + N S +M RR + + +
Sbjct: 4 EDWEAEIIKPHISSYV-PVFEKDRYSSGANGDTFNRTPASSSEMGDGSSRRDHFMRSGFA 62
Query: 367 SNKSLGRIIPGEDS 380
S +SLG PGE +
Sbjct: 63 SGRSLGNRDPGESN 76
>UNIPROTKB|Q5W5U4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9913 "Bos taurus" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 EMBL:AF541971
IPI:IPI00689085 RefSeq:NP_001007820.1 UniGene:Bt.35994
ProteinModelPortal:Q5W5U4 SMR:Q5W5U4 STRING:Q5W5U4 PRIDE:Q5W5U4
GeneID:493725 KEGG:bta:493725 CTD:54514 InParanoid:Q5W5U4 KO:K13982
OrthoDB:EOG4W6NVF NextBio:20865468 GO:GO:0071547 Uniprot:Q5W5U4
Length = 729
Score = 697 (250.4 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 155/407 (38%), Positives = 247/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P+I GRD + A+TG
Sbjct: 278 VEVSGHDPPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIIQGGRDLMACAQTG 337
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI+ + RKF+ VR
Sbjct: 338 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 397
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++D++ G + LR+V YLV+DEADRM
Sbjct: 398 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDVI---GKEKIGLRQVKYLVLDEADRML 454
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT++FSATFP +++ LA + L + + VG
Sbjct: 455 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 514
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q +++V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 515 RDVQQTILQVGQYSKRE-KLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 572
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 573 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 632
Query: 805 TGRAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F E D++ + LVK L ++Q VP L+ +A S
Sbjct: 633 TGRCGNTGRAISFFDLESDSQLAQPLVKVLSDAQQDVPAWLEEIAFS 679
Score = 46 (21.3 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 339 FTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYG 385
+ DGN+ E+ R+G R S + GR P D + D G
Sbjct: 135 YQDGNDSEALGSSRRGGRGSF-----RGCRGGFGRGSPNSDYEQDEG 176
Score = 41 (19.5 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 309 EDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNV--ESKKMDRKGDRRSNGEQPKKS 366
ED + + + ++S V P EK + + + N S +M RR + + +
Sbjct: 4 EDWEAEIIKPHISSYV-PVFEKDRYSSGANGDTFNRTPASSSEMGDGSSRRDHFMRSGFA 62
Query: 367 SNKSLGRIIPGEDS 380
S +SLG PGE +
Sbjct: 63 SGRSLGNRDPGESN 76
>UNIPROTKB|E2RMU5 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0033391 "chromatoid body" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0007283
GO:GO:0003676 GO:GO:0030317 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
OMA:RDAGESN GO:GO:0000237 EMBL:AAEX03001439
Ensembl:ENSCAFT00000011062 Uniprot:E2RMU5
Length = 728
Score = 698 (250.8 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 156/407 (38%), Positives = 247/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P+I++GRD + A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI+ + RKF+ VR
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 396
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++DI+ G + LR+V YLV+DEADRM
Sbjct: 397 AVVIYGGTQLGYSIRQIVQGCNILCATPGRLMDII---GKEKIGLRQVKYLVLDEADRML 453
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT++FSATFP +++ LA + L + + VG
Sbjct: 454 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 513
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q +++V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 514 RDVQQTILQVGQYSKRE-KLVEILRSIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 571
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 572 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 631
Query: 805 TGRAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F E D + LVK L ++Q VP L+ +A S
Sbjct: 632 TGRCGNTGRAISFFDPESDNHLAQPLVKVLSDAQQDVPAWLEEIAFS 678
Score = 44 (20.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 339 FTDGNNVESKKMDRKGDRRS 358
F DGN+ E+ R+G R S
Sbjct: 134 FQDGNDSEASGSSRRGGRGS 153
Score = 44 (20.5 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 223 SGKNSWKSEAEGGESGDTQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 282
Query: 298 SAAPAL 303
A PA+
Sbjct: 283 DAPPAI 288
>UNIPROTKB|Q6GWX0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9823 "Sus scrofa" [GO:0033391 "chromatoid body"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] [GO:0071546 "pi-body" evidence=ISS]
[GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 EMBL:AY626785 RefSeq:NP_001001910.1 UniGene:Ssc.42782
ProteinModelPortal:Q6GWX0 SMR:Q6GWX0 STRING:Q6GWX0 GeneID:431672
KEGG:ssc:431672 Uniprot:Q6GWX0
Length = 722
Score = 695 (249.7 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 156/407 (38%), Positives = 246/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P+I++GRD + A+TG
Sbjct: 274 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 333
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTRELV QI+ + RKF+ VR
Sbjct: 334 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 393
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++DI+ G + L+++ YLV+DEADRM
Sbjct: 394 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDII---GKEKIGLKQIKYLVLDEADRML 450
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT++FSATFP +++ LA + L + + VG
Sbjct: 451 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 510
Query: 686 KDITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q ++V S R +LLE+L ++ + ++FV +++K D + L + S+
Sbjct: 511 RDVQQADLQVGQYSKRE-KLLEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 568
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 569 HGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 628
Query: 805 TGRAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F E D + LVK L ++Q VP L+ +A S
Sbjct: 629 TGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFS 675
Score = 45 (20.9 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 220 SGKNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 279
Query: 298 SAAPAL 303
A PA+
Sbjct: 280 DAPPAI 285
>UNIPROTKB|Q4R5S7 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9541 "Macaca fascicularis" [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0071546 "pi-body" evidence=ISS] [GO:0071547
"piP-body" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0048471 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AB169466
ProteinModelPortal:Q4R5S7 SMR:Q4R5S7 Uniprot:Q4R5S7
Length = 725
Score = 694 (249.4 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 156/407 (38%), Positives = 246/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P+I++GRD + A+TG
Sbjct: 277 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 336
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTRELV QI+ + RKF+ VR
Sbjct: 337 SGKTAAFLLPILAHMMHDGITASCFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 396
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++DI+ G + L+++ YLV+DEADRM
Sbjct: 397 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDII---GKEKIGLKQIKYLVLDEADRML 453
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT++FSATFP +++ LA + L + + VG
Sbjct: 454 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 513
Query: 686 KDITQLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q V +V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 514 RDVQQTVLQVGQFSKRE-KLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 571
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 572 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 631
Query: 805 TGRAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F E D + LVK L ++Q VP L+ +A S
Sbjct: 632 TGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFS 678
Score = 46 (21.3 bits), Expect = 2.6e-71, Sum P(2) = 2.6e-71
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 339 FTDGNNVESKKMDRKGDRRS 358
+ DGNN E+ R+G R S
Sbjct: 134 YRDGNNSEASGPSRRGGRSS 153
Score = 45 (20.9 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 223 SGKNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGISFDKYDTILVEVSGH 282
Query: 298 SAAPAL 303
A PA+
Sbjct: 283 DAPPAI 288
Score = 40 (19.1 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 310 DEDIDP-LDAFMNSMVLPEVEKLKNTVEPSFTDGNNV--ESKKMDRKGDRRSNGEQPKKS 366
DED + ++ M+S V P EK + + + + N S +MD RR + + +
Sbjct: 3 DEDWEAEINPHMSSYV-PIFEKDRYSSGENGDNFNRTPTSSSEMDDGPSRRDHFMKSGFA 61
Query: 367 SNKSLGRIIPGEDSDSD 383
S ++ G GE + D
Sbjct: 62 SGRNFGNRDAGESNKRD 78
>UNIPROTKB|D4ADV9 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 IPI:IPI00782021 Ensembl:ENSRNOT00000060732
Uniprot:D4ADV9
Length = 674
Score = 696 (250.1 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 156/410 (38%), Positives = 248/410 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P++++GRD + A+TG
Sbjct: 250 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 309
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI+ + RKF+ VR
Sbjct: 310 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 369
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ I ++ +G I+ TPGR++DI+ G + L++V YLV+DEADRM
Sbjct: 370 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDII---GKEKIGLKQVKYLVLDEADRML 426
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT+LFSATFP +++ LA + L + + VG
Sbjct: 427 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 486
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q +++V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 487 RDVQQSILQVGQYSKRE-KLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 544
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 545 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 604
Query: 805 TGRAGRKGCAITFI-SEEDAKYSPDLVKALELSEQVVPDDLKALADSFMA 853
TGR G G AI+F +E D + LVK L ++Q VP L+ +A S A
Sbjct: 605 TGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYA 654
Score = 43 (20.2 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 196 SGKNSWKSEAEGGESSDIQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 255
Query: 298 SAAPAL 303
A PA+
Sbjct: 256 DAPPAI 261
Score = 42 (19.8 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 339 FTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYG 385
+ DGN+ E+ R+G R G LGR P + D D G
Sbjct: 109 YPDGNDSEASGPFRRGGR---GSFRGCRGGFGLGR--PNSEYDQDQG 150
>UNIPROTKB|D6RDK4 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 CTD:54514 KO:K13982 RefSeq:NP_001160005.1
UniGene:Hs.223581 GeneID:54514 KEGG:hsa:54514 HGNC:HGNC:18700
GenomeRNAi:54514 NextBio:56900 EMBL:AC016632 IPI:IPI00953956
ProteinModelPortal:D6RDK4 SMR:D6RDK4 PRIDE:D6RDK4
Ensembl:ENST00000514278 UCSC:uc010ivz.3 ArrayExpress:D6RDK4
Bgee:D6RDK4 Uniprot:D6RDK4
Length = 704
Score = 694 (249.4 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 156/407 (38%), Positives = 246/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P+I++GRD + A+TG
Sbjct: 256 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 315
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTRELV QI+ + RKF+ VR
Sbjct: 316 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 375
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++DI+ G + L+++ YLV+DEADRM
Sbjct: 376 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDII---GKEKIGLKQIKYLVLDEADRML 432
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT++FSATFP +++ LA + L + + VG
Sbjct: 433 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 492
Query: 686 KDITQLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q V +V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 493 RDVQQTVLQVGQFSKRE-KLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 550
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 551 HGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 610
Query: 805 TGRAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F E D + LVK L ++Q VP L+ +A S
Sbjct: 611 TGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFS 657
Score = 45 (20.9 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 202 SGKNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 261
Query: 298 SAAPAL 303
A PA+
Sbjct: 262 DAPPAI 267
Score = 42 (19.8 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 339 FTDGNNVESKKMDRKGDRRS 358
+ DGNN E+ R+G R S
Sbjct: 113 YRDGNNSEASGPYRRGGRGS 132
>UNIPROTKB|Q9NQI0 [details] [associations]
symbol:DDX4 "Probable ATP-dependent RNA helicase DDX4"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0000237
"leptotene" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007141 "male meiosis I" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0032880 "regulation of protein
localization" evidence=IEA] [GO:0033391 "chromatoid body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0071546 "pi-body" evidence=ISS] [GO:0071547 "piP-body"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 EMBL:CH471123 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268804 HOVERGEN:HBG015893 CTD:54514 KO:K13982
OrthoDB:EOG4W6NVF GO:GO:0071547 EMBL:AY004154 EMBL:AF262962
EMBL:AK292417 EMBL:BC047455 EMBL:BC088362 EMBL:AL137462
IPI:IPI00071483 IPI:IPI00456933 PIR:T46407 RefSeq:NP_001136021.1
RefSeq:NP_001160005.1 RefSeq:NP_077726.1 UniGene:Hs.223581
ProteinModelPortal:Q9NQI0 SMR:Q9NQI0 IntAct:Q9NQI0 STRING:Q9NQI0
PhosphoSite:Q9NQI0 DMDM:20138033 REPRODUCTION-2DPAGE:IPI00456933
PaxDb:Q9NQI0 PRIDE:Q9NQI0 Ensembl:ENST00000353507
Ensembl:ENST00000354991 Ensembl:ENST00000505374 GeneID:54514
KEGG:hsa:54514 UCSC:uc003jqg.4 UCSC:uc003jqh.4
GeneCards:GC05P055069 HGNC:HGNC:18700 HPA:CAB026170 HPA:HPA037763
HPA:HPA037764 MIM:605281 neXtProt:NX_Q9NQI0 PharmGKB:PA38646
InParanoid:Q9NQI0 OMA:RDAGESN PhylomeDB:Q9NQI0 GenomeRNAi:54514
NextBio:56900 ArrayExpress:Q9NQI0 Bgee:Q9NQI0 CleanEx:HS_DDX4
Genevestigator:Q9NQI0 GermOnline:ENSG00000152670 GO:GO:0000237
Uniprot:Q9NQI0
Length = 724
Score = 694 (249.4 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 156/407 (38%), Positives = 246/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P+I++GRD + A+TG
Sbjct: 276 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIILAGRDLMACAQTG 335
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTRELV QI+ + RKF+ VR
Sbjct: 336 SGKTAAFLLPILAHMMHDGITASRFKELQEPECIIVAPTRELVNQIYLEARKFSFGTCVR 395
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++DI+ G + L+++ YLV+DEADRM
Sbjct: 396 AVVIYGGTQLGHSIRQIVQGCNILCATPGRLMDII---GKEKIGLKQIKYLVLDEADRML 452
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT++FSATFP +++ LA + L + + VG
Sbjct: 453 DMGFGPEMKKLISCPGMPSKEQRQTLMFSATFPEEIQRLAAEFLKSNYLFVAVGQVGGAC 512
Query: 686 KDITQLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q V +V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 513 RDVQQTVLQVGQFSKRE-KLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 570
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 571 HGDREQREREQALGDFRFGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 630
Query: 805 TGRAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F E D + LVK L ++Q VP L+ +A S
Sbjct: 631 TGRCGNTGRAISFFDLESDNHLAQPLVKVLTDAQQDVPAWLEEIAFS 677
Score = 45 (20.9 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 222 SGKNSWKSEAEGGESSDTQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 281
Query: 298 SAAPAL 303
A PA+
Sbjct: 282 DAPPAI 287
Score = 42 (19.8 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 339 FTDGNNVESKKMDRKGDRRS 358
+ DGNN E+ R+G R S
Sbjct: 133 YRDGNNSEASGPYRRGGRGS 152
>MGI|MGI:102670 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0007141 "male meiosis I" evidence=IMP]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0032880 "regulation of protein localization" evidence=IMP]
[GO:0033391 "chromatoid body" evidence=ISO;IDA] [GO:0044464 "cell
part" evidence=IDA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0071546 "pi-body" evidence=IDA] [GO:0071547
"piP-body" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:102670 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0048471 GO:GO:0032880
GO:GO:0007283 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0033391 GO:GO:0007141
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 HOGENOM:HOG000268804
HOVERGEN:HBG015893 CTD:54514 KO:K13982 GO:GO:0071547 GO:GO:0000237
EMBL:AK014844 EMBL:D14859 IPI:IPI00121394 RefSeq:NP_034159.1
UniGene:Mm.12818 ProteinModelPortal:Q61496 SMR:Q61496 STRING:Q61496
PhosphoSite:Q61496 REPRODUCTION-2DPAGE:IPI00121394
REPRODUCTION-2DPAGE:Q61496 PaxDb:Q61496 PRIDE:Q61496
Ensembl:ENSMUST00000075748 GeneID:13206 KEGG:mmu:13206
UCSC:uc007rwm.2 ChiTaRS:DDX4 NextBio:283368 Bgee:Q61496
CleanEx:MM_DDX4 Genevestigator:Q61496 GermOnline:ENSMUSG00000021758
Uniprot:Q61496
Length = 702
Score = 690 (248.0 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 153/407 (37%), Positives = 246/407 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P++++GRD + A+TG
Sbjct: 249 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 308
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI+ + RKF+ VR
Sbjct: 309 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 368
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + ++ +G I+ TPGR++DI+ G + L++V YLV+DEADRM
Sbjct: 369 AVVIYGGTQFGHSVRQIVQGCNILCATPGRLMDII---GKEKIGLKQVKYLVLDEADRML 425
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT+LFSATFP +++ LA L + + VG
Sbjct: 426 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGDFLKSSYLFVAVGQVGGAC 485
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q +++V S R +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 486 RDVQQTILQVGQYSKRE-KLVEILRNIGDE-RTMVFVETKKKADFIATFLCQEKISTTSI 543
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YVHR+GR
Sbjct: 544 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYVHRIGR 603
Query: 805 TGRAGRKGCAITFI-SEEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F ++ D + LVK L ++Q VP L+ +A S
Sbjct: 604 TGRCGNTGRAISFFDTDSDNHLAQPLVKVLSDAQQDVPAWLEEIAFS 650
Score = 46 (21.3 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 341 DGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYG 385
DGN+ E+ R+G R G LGR P +SD D G
Sbjct: 110 DGNDSEASGPFRRGGR---GSFRGCRGGFGLGR--PNSESDQDQG 149
Score = 46 (21.3 bits), Expect = 6.8e-71, Sum P(2) = 6.8e-71
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 195 SGKNSWKSETEGGESSDSQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 254
Query: 298 SAAPAL 303
A PA+
Sbjct: 255 DAPPAI 260
>ZFIN|ZDB-GENE-990415-272 [details] [associations]
symbol:vasa "vasa homolog" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008406 "gonad development" evidence=IEP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-990415-272 GO:GO:0005524 GO:GO:0008406
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HSSP:Q58083 HOGENOM:HOG000268804 HOVERGEN:HBG015893 KO:K13982
EMBL:AB005147 IPI:IPI00495861 RefSeq:NP_571132.1 UniGene:Dr.559
ProteinModelPortal:O42107 SMR:O42107 STRING:O42107 PRIDE:O42107
GeneID:30263 KEGG:dre:30263 CTD:30263 InParanoid:O42107
NextBio:20806710 ArrayExpress:O42107 Bgee:O42107 Uniprot:O42107
Length = 716
Score = 714 (256.4 bits), Expect = 1.6e-70, P = 1.6e-70
Identities = 160/405 (39%), Positives = 244/405 (60%)
Query: 457 IHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSG 516
+ G + PK I T+ + GL + + + K Y KP P+Q +P+I +GRD + A+TGSG
Sbjct: 267 VSGSNPPKAIMTFEEAGLCDSLSKNVSKSGYVKPTPVQKHGIPIISAGRDLMACAQTGSG 326
Query: 517 KTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572
KT AF+LP+L+ A+ P +I+APTREL+ QI+ + RKFA VR V
Sbjct: 327 KTAAFLLPILQRFMTDGVAASKFSEIQEPEAIIVAPTRELINQIYLEARKFAYGTCVRPV 386
Query: 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632
VYGG I E+ +G ++ TPGR+ D++ GKI L +V YLV+DEADRM DM
Sbjct: 387 VVYGGINTGYTIREVLKGCNVLCATPGRLHDLI--GRGKI-GLSKVRYLVLDEADRMLDM 443
Query: 633 GFEPQITRIVQN----IRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKD 687
GFEP++ ++V + + +RQT++FSAT+P ++ +A L + + VG D
Sbjct: 444 GFEPEMRKLVASPGMPSKEERQTLMFSATYPEDIQRMAADFLKVDYIFLAVGVVGGACSD 503
Query: 688 ITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
+ Q +V+V S R +LLELL + + ++FV ++ D + L + S+HG
Sbjct: 504 VEQTVVQVDQYSKRD-QLLELLRATGNE-RTMVFVETKRSADFIATFLCQEKISTTSIHG 561
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806
++Q +RE +SDF+ C +L+ATSVAARGLD+++++ V+NFD P+ ++YVHR+GRTG
Sbjct: 562 DREQREREKALSDFRLGHCPVLVATSVAARGLDIEQVQHVVNFDMPSSIDEYVHRIGRTG 621
Query: 807 RAGRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
R G G A++F + E D + LVK L ++QVVP L+ +A S
Sbjct: 622 RCGNTGRAVSFFNPESDTPLARSLVKVLSGAQQVVPKWLEEVAFS 666
>RGD|1308793 [details] [associations]
symbol:Ddx4 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000237 "leptotene"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=ISO;ISS]
[GO:0007141 "male meiosis I" evidence=IEA;ISO] [GO:0007275
"multicellular organismal development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA;ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA;ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0032880 "regulation of protein localization"
evidence=IEA;ISO] [GO:0033391 "chromatoid body" evidence=IEA;ISO]
[GO:0044464 "cell part" evidence=ISO] [GO:0048471 "perinuclear
region of cytoplasm" evidence=IEA;ISO] [GO:0071546 "pi-body"
evidence=ISO;ISS] [GO:0071547 "piP-body" evidence=ISO;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 689 (247.6 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 154/410 (37%), Positives = 248/410 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P++++GRD + A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI+ + RKF+ VR
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ I ++ +G I+ TPGR++DI+ G + L++V YLV+DEADRM
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDII---GKEKIGLKQVKYLVLDEADRML 437
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT+LFSATFP +++ LA + L + + VG
Sbjct: 438 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 497
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q +++V P + +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 498 RDVQQSILQVGPVFKK-RKLVEILRNIGDE-RPMVFVETKKKADFIATFLCQEKISTTSI 555
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINF+ P+ ++YVHR+GR
Sbjct: 556 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGR 615
Query: 805 TGRAGRKGCAITFI-SEEDAKYSPDLVKALELSEQVVPDDLKALADSFMA 853
TGR G G AI+F +E D + LVK L ++Q VP L+ +A S A
Sbjct: 616 TGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYA 665
Score = 43 (20.2 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 207 SGKNSWKSEAEGGESSDIQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 266
Query: 298 SAAPAL 303
A PA+
Sbjct: 267 DAPPAI 272
>UNIPROTKB|Q64060 [details] [associations]
symbol:Ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1308793 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0007283 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0071546 GO:GO:0033391 GO:GO:0007141 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 CTD:54514 KO:K13982 OrthoDB:EOG4W6NVF
GO:GO:0071547 GO:GO:0000237 EMBL:S75275 IPI:IPI00208943 PIR:JC2534
RefSeq:NP_001071115.1 UniGene:Rn.198577 ProteinModelPortal:Q64060
SMR:Q64060 STRING:Q64060 PRIDE:Q64060 GeneID:310090 KEGG:rno:310090
NextBio:661610 Genevestigator:Q64060 Uniprot:Q64060
Length = 713
Score = 689 (247.6 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 154/410 (37%), Positives = 248/410 (60%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ + L + I K Y K P+Q ++P++++GRD + A+TG
Sbjct: 261 VEVSGHDAPPAILTFEEANLCQTLNNNIAKAGYTKLTPVQKYSIPIVLAGRDLMACAQTG 320
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI+ + RKF+ VR
Sbjct: 321 SGKTAAFLLPILAHMMRDGITASRFKELQEPECIIVAPTRELINQIYLEARKFSFGTCVR 380
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ I ++ +G I+ TPGR++DI+ G + L++V YLV+DEADRM
Sbjct: 381 AVVIYGGTQFGHSIRQIVQGCNILCATPGRLMDII---GKEKIGLKQVKYLVLDEADRML 437
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF P++ +++ + RQT+LFSATFP +++ LA + L + + VG
Sbjct: 438 DMGFGPEMKKLISCPGMPSKEQRQTLLFSATFPEEIQRLAGEFLKSNYLFVAVGQVGGAC 497
Query: 686 KDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+D+ Q +++V P + +L+E+L ++ + ++FV +++K D + L + S+
Sbjct: 498 RDVQQSILQVGPVFKK-RKLVEILRNIGDE-RPMVFVETKKKADFIATFLCQEKISTTSI 555
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINF+ P+ ++YVHR+GR
Sbjct: 556 HGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFNLPSTIDEYVHRIGR 615
Query: 805 TGRAGRKGCAITFI-SEEDAKYSPDLVKALELSEQVVPDDLKALADSFMA 853
TGR G G AI+F +E D + LVK L ++Q VP L+ +A S A
Sbjct: 616 TGRCGNTGRAISFFDTESDNHLAQPLVKVLSDAQQDVPAWLEEIAFSSYA 665
Score = 43 (20.2 bits), Expect = 1.8e-70, Sum P(2) = 1.8e-70
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+G+N W + E +S D + P+ DE+ + Q G D +LV+ G
Sbjct: 207 SGKNSWKSEAEGGESSDIQGPKVTYIPPPPPEDEDSIFAHYQTGINFDKYDTILVEVSGH 266
Query: 298 SAAPAL 303
A PA+
Sbjct: 267 DAPPAI 272
>CGD|CAL0005460 [details] [associations]
symbol:DBP3 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0030687 "preribosome, large subunit
precursor" evidence=IEA] [GO:0000464 "endonucleolytic cleavage in
ITS1 upstream of 5.8S rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0005460
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 EMBL:AACQ01000001
EMBL:AACQ01000002 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 RefSeq:XP_723365.1 RefSeq:XP_723554.1
ProteinModelPortal:Q5APT8 STRING:Q5APT8 GeneID:3634868
GeneID:3635070 KEGG:cal:CaO19.12334 KEGG:cal:CaO19.4870 KO:K14811
Uniprot:Q5APT8
Length = 564
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 170/452 (37%), Positives = 262/452 (57%)
Query: 404 KRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVP 463
K+ KK K + S V+ + D Y + +++ ++ ++ + E+ +
Sbjct: 92 KKEKKHKDSESSPVEPAANDSSSSTN--YTQSSKLSSVSQSDIDKFLSDNEITVEDPSSS 149
Query: 464 --KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521
+PI ++ Q LTS I + K ++KP PIQ+ + P ++SG+D IGVA+TGSGKT AF
Sbjct: 150 SLRPILSFDQVQLTSAITSKLSK--FDKPTPIQSVSWPFLLSGKDVIGVAETGSGKTFAF 207
Query: 522 VLPMLRHIKDQPPVAAGDGPV--GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579
+P + +I + G+ L ++PTREL QI+ ++ + GV CV VYGG
Sbjct: 208 GVPAINNI-----ITTGNTKTLSVLCISPTRELALQIYDNLIELTADSGVNCVAVYGGVS 262
Query: 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639
QI ++K +VV TPGR++D++ + G I NL +V YLV+DEADRM + GFE I
Sbjct: 263 KDDQIRKIKTAN-VVVATPGRLVDLI--NDGAI-NLGKVNYLVLDEADRMLEKGFEEDIK 318
Query: 640 RIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV--NKDITQLVEVRP 696
I+ N +RQT++F+AT+P++V LA +N PV++ VG R + NK ITQ+VEV
Sbjct: 319 TIISNTSNSERQTLMFTATWPKEVRELANNFMNSPVKVTVGDRDELSANKRITQVVEVIN 378
Query: 697 ESDRFLRLLELLGEWYEK----GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
+ D+ +L++LL ++ KILIF +++ + L ++ + ++HG Q
Sbjct: 379 KFDKEKKLIQLLRKYNANESSDNKILIFALYKKEASRIENFLKRNRFSVAAIHGDLSQQQ 438
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
R + +S FKS NLL+AT VAARGLD+ +++VIN P EDYVHR+GRTGRAG KG
Sbjct: 439 RTAALSAFKSGQSNLLLATDVAARGLDIPNVKVVINLTFPLTIEDYVHRIGRTGRAGAKG 498
Query: 813 CAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
A T +E++ S L L + Q VP++L
Sbjct: 499 TAHTLFTEDEKHLSGALCNILRGANQPVPEEL 530
>UNIPROTKB|Q91372 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:8355 "Xenopus laevis" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005635
"nuclear envelope" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS] [GO:0032019
"mitochondrial cloud" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005635 GO:GO:0048477 GO:GO:0007283
GO:GO:0003676 GO:GO:0007281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0071546 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P09052 HOVERGEN:HBG015893 CTD:54514 KO:K13982
GO:GO:0071547 EMBL:AF046043 PIR:I51235 RefSeq:NP_001081728.1
UniGene:Xl.256 ProteinModelPortal:Q91372 SMR:Q91372 GeneID:398019
KEGG:xla:398019 Xenbase:XB-GENE-1016814 Uniprot:Q91372
Length = 700
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 186/543 (34%), Positives = 303/543 (55%)
Query: 348 KKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVK 407
+ D +GD ++GE+ + +S GR G ++SD G + R +
Sbjct: 153 RNFDNRGDFGNSGEEEDRP--RSYGR---GGFNNSDTGGRGRRGGRGGGSQYGGYKGRNE 207
Query: 408 KTKAEK-LSIVDHSKIDYQPFRKNFYIEVK------EIARMTPEEVSAYR-KQLELKIHG 459
+ E S + ++ D +P +K YI I R ++ + ++ + + G
Sbjct: 208 EVGVESGKSQEEGNEKDEKP-KKVTYIPPPPPDGEDNIFRQYQSGINFDKYDEILVDVTG 266
Query: 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTL 519
KDVP I T+ + L + + + Y K P+Q ++P+IM+GRD + A+TGSGKT
Sbjct: 267 KDVPPAILTFEEANLCETLRRNVARAGYVKLTPVQKHSIPIIMAGRDLMACAQTGSGKTA 326
Query: 520 AFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575
AF+LP+L ++ ++ A+ P +I+APTREL+ QI+ D RKF+ VR V VY
Sbjct: 327 AFLLPILSYMMNEGITASQYLQLQEPEAIIIAPTRELINQIYLDARKFSYGTCVRPVVVY 386
Query: 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE 635
GG + ++++G I+ TPGR++DI+ S KI L ++ YLV+DEADRM DMGF
Sbjct: 387 GGIQPVHAMRDVEKGCNILCATPGRLLDIV--SKEKI-GLSKLRYLVLDEADRMLDMGFA 443
Query: 636 PQITRIVQN----IRPDRQTVLFSATFPRQVEILARKVL-NKPVEIQVGGRSVVNKDITQ 690
P+I +++ + RQT++FSAT+P ++ LA L ++ + + VG D+ Q
Sbjct: 444 PEIEKLMTKPGMPTKEKRQTLMFSATYPEEIRRLASNYLKSEHLFVVVGLVGGACSDVAQ 503
Query: 691 LV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749
V E+R E+ + +LLE+L EK + +IFV++++K D + L + + S+HG ++
Sbjct: 504 TVLEMR-ENGKMEKLLEILKS-SEKERTMIFVNTKKKADFIAGYLCQEKFSSTSIHGDRE 561
Query: 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809
Q RES + DF++ C +++ T+VAARGLD++ ++ VIN+D P ++YVHR+GRTGR G
Sbjct: 562 QYQRESALWDFRTGKCTVIVCTAVAARGLDIENVQHVINYDVPKEVDEYVHRIGRTGRCG 621
Query: 810 RKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALA-------DSFMAKVNQGLEQ 861
G A +F + ++D + LVK L + Q VP L+ +A +SF A + G EQ
Sbjct: 622 NTGKATSFFNVQDDHVIARPLVKILTDAHQEVPAWLEEIAFGGHGALNSFYAADSMG-EQ 680
Query: 862 AHG 864
A G
Sbjct: 681 AGG 683
>DICTYBASE|DDB_G0281925 [details] [associations]
symbol:DDB_G0281925 "DEAD/DEAH box helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0281925 GO:GO:0005524 GO:GO:0003676
EMBL:AAFI02000043 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 RefSeq:XP_640502.1
ProteinModelPortal:Q54T87 PRIDE:Q54T87 EnsemblProtists:DDB0304645
GeneID:8623317 KEGG:ddi:DDB_G0281925 InParanoid:Q54T87 OMA:SWGNRDN
Uniprot:Q54T87
Length = 586
Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
Identities = 191/537 (35%), Positives = 282/537 (52%)
Query: 347 SKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRV 406
S RK + S + ++SS+K L + D SD K
Sbjct: 3 STSSKRKTEDESLEVKVEQSSSKKLK--MSKRDESSDESSSSDSEVESKSKSIKKSSKSE 60
Query: 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPI 466
+K K+EK S SK D + K E KE ++P E +RK+ + I GK P P
Sbjct: 61 EK-KSEKKS--SSSKEDKEEEVKE---ETKEDIVLSPTE---WRKKHNVLIEGKSQPNPF 111
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
+ + + + P IQ Q+ P+I+ G D +G+A TGSGKTLAF+LP L
Sbjct: 112 QKFTDYEFPRMFQHIFQ--GFTAPTVIQGQSWPIILGGNDLVGLAATGSGKTLAFLLPAL 169
Query: 527 RHIKDQPPVAA-GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
I P + G P+ L+MAPTREL QQI + + +R + YGG G Q
Sbjct: 170 LKIISLPKRPSYGATPLVLVMAPTRELAQQIEEVCKTSIRGTSIRQLCAYGGLGKIDQSR 229
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
L+ G +IV+ TPGR+ D+L + +L V YLV+DEADRM DMGF PQI ++ I
Sbjct: 230 ILRNGVDIVIGTPGRLNDLL-----RKHHLSSVQYLVLDEADRMLDMGFMPQIESLIDQI 284
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DITQ-LVEVRPESDRFLR 703
+RQT++FSAT+P++V++LA K L P++I VG + + ++TQ +V + SD L+
Sbjct: 285 PKERQTLMFSATWPKEVKLLASKFLKDPIKITVGSQELTGSINVTQHIVNIDDLSD--LQ 342
Query: 704 LLELLGEWYEK-------GKILIFVHSQEKCDALFRDLL--KHGYPCLSLHGAKDQTDRE 754
+L+ + K +++F + + KCD F+ L + + LH KDQ RE
Sbjct: 343 SDDLIYDEINKILTADPTNTVIVFCNEKYKCDD-FQHYLSTQKNVKSIVLHSGKDQRMRE 401
Query: 755 STISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA 814
S + F+ + +LIAT VAARGLD+ ++ V N+ P + EDYVHR+GRTGRAG+ G A
Sbjct: 402 SGLKLFRDHRIRILIATDVAARGLDIPSVKAVFNYRLPGNIEDYVHRIGRTGRAGKTGDA 461
Query: 815 ITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSG 871
++++ + DLVK L+ + Q +PD L + F QG+ + G G GG G
Sbjct: 462 WSYVTTQTPNLR-DLVKILQRTNQKIPDFL----EKFAVHSRQGISRYGGGGRGGRG 513
>UNIPROTKB|Q3MSQ8 [details] [associations]
symbol:ddx4 "Probable ATP-dependent RNA helicase DDX4"
species:45623 "Pelophylax lessonae" [GO:0071546 "pi-body"
evidence=ISS] [GO:0071547 "piP-body" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0007275 GO:GO:0005524 GO:GO:0005634
GO:GO:0030154 GO:GO:0048477 GO:GO:0007283 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0071546
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
HOVERGEN:HBG015893 GO:GO:0071547 EMBL:AJ841700
ProteinModelPortal:Q3MSQ8 SMR:Q3MSQ8 Uniprot:Q3MSQ8
Length = 724
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 155/409 (37%), Positives = 250/409 (61%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G DVP I T+ + L + + + K Y K PIQ ++P+I++GRD + A+TG
Sbjct: 274 VEVSGSDVPPAILTFEEANLCDSLAKNVCKSGYVKLTPIQKHSIPIIVAGRDLMACAQTG 333
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ + ++ P +I+APTREL+ QI+ D RKF+ VR
Sbjct: 334 SGKTAAFLLPILAHLMVKGVESSAFQTLKEPEAIIVAPTRELINQIYLDARKFSYGTCVR 393
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + + ++ G I+ TPGR++D++ +T LR YLV+DEADRM
Sbjct: 394 PVVIYGGTQMFHSLKQISEGCNILCATPGRLLDVIRKEKIGLTKLR---YLVLDEADRML 450
Query: 631 DMGFEPQITRIVQNI----RPDRQTVLFSATFPRQVEILARKVLNKP--VEIQVGGRSVV 684
DMGF I ++++ + +RQT++FSATFP ++ LAR++L KP + + VG
Sbjct: 451 DMGFREDIENLLKSSGMPSKEERQTLMFSATFPSSIQSLAREIL-KPDYLFVVVGQVGGA 509
Query: 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
D+ Q+V E + +L+E+L E + + ++FV +++K D + L + P S+
Sbjct: 510 CSDVEQMVIEVDEFGKKDKLMEILQEIGSE-RTMVFVKTKKKADFIATFLCQEKVPSTSI 568
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE+ + DF++ C +++ATSVAARGLD++ + VINFD P+ ++YVHR+GR
Sbjct: 569 HGDREQKERETALRDFRTGQCPVIVATSVAARGLDIENVSYVINFDIPDDIDEYVHRIGR 628
Query: 805 TGRAGRKGCAITFIS---EEDAKYSPDLVKALELSEQVVPDDLKALADS 850
TGR G G AI+F +++ + + LVK L + Q VP L+ +A S
Sbjct: 629 TGRCGNTGRAISFFDKRGDDEQRIARSLVKVLSDAHQEVPAWLEEVAFS 677
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 155/406 (38%), Positives = 236/406 (58%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL+ I+ + + Y +P PIQ QA+P ++ GRD + A+TG+GKT F LP+L+H+ +
Sbjct: 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITR 66
Query: 533 PPVAAGDGPV-GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
P A G PV LI+ PTREL QI ++R ++K + +R + V+GG + Q+ +L+ G
Sbjct: 67 QPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGV 126
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
+++V TPGR++D+ + K L +V LV+DEADRM DMGF I R++ + RQ
Sbjct: 127 DVLVATPGRLLDLEHQNAVK---LDQVEILVLDEADRMLDMGFIHDIRRVLTKLPAKRQN 183
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW 711
+LFSATF ++ LA K+L+ P+EI+V R+ + +TQ V + R ELL
Sbjct: 184 LLFSATFSDDIKALAEKLLHNPLEIEVARRNTASDQVTQHVHFVDKK----RKRELLSHM 239
Query: 712 YEKG---KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
KG ++L+F ++ + L L K G ++HG K Q R ++DFKS +L
Sbjct: 240 IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
+AT +AARGLD++EL V+N++ PN EDYVHR+GRTGRA G A++ + ++ K D
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359
Query: 829 LVKAL--ELSEQVVPDDLKALADSFMAK-VNQGLEQAHGTGYGGSG 871
+ K L E+ +P S A+ + G +Q G G G G
Sbjct: 360 IEKLLKKEIPRIAIPG--YEPDPSIKAEPIQNGRQQRGGGGRGQGG 403
>UNIPROTKB|F1N991 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000237 "leptotene"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male
meiosis I" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030317 "sperm motility" evidence=IEA]
[GO:0032880 "regulation of protein localization" evidence=IEA]
[GO:0033391 "chromatoid body" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0048471 GO:GO:0032880 GO:GO:0003676
GO:GO:0030317 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00620000087942 GO:GO:0000237
OMA:GINFDKF EMBL:AADN02054551 EMBL:AADN02054552 EMBL:AADN02054553
IPI:IPI00819436 ProteinModelPortal:F1N991
Ensembl:ENSGALT00000023724 Uniprot:F1N991
Length = 568
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 155/404 (38%), Positives = 239/404 (59%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P P+ + + + + I K Y K P+Q ++PVI +GRD + A+TG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 515 SGKTLAFVLPML-RHIKDQPPVAA---GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP++ R +KD +A P +I+APTREL+ QI + RKF +R
Sbjct: 215 SGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR 274
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ I ++ +G I+ TPGR++DI+ GKI+ L V YLV+DEADRM
Sbjct: 275 PVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDII--EKGKIS-LVEVKYLVLDEADRML 331
Query: 631 DMGFEPQITRIVQNIR-PD---RQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF + +++ P RQT++FSATFP +V+ LA + L + + +G
Sbjct: 332 DMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGAC 391
Query: 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
D+ Q + P + +L+E+L + + ++FV +++K D L L + P S+H
Sbjct: 392 SDVQQNILQVPRLSKRDKLIEILQSTGGE-RTMVFVDTKKKADYLAAFLCQENLPSTSIH 450
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805
G ++Q +RE + DF+S C +L+ATSVA+RGLD++ ++ VINFD PN EDYVHR+GRT
Sbjct: 451 GDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRT 510
Query: 806 GRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALA 848
GR G G A++F ++ D L+K L ++Q VP L+ +A
Sbjct: 511 GRCGNTGKAVSFFDDQSDGHLVQSLLKVLSEAQQEVPVWLEEMA 554
>UNIPROTKB|B2C6E9 [details] [associations]
symbol:B2C6E9 "VASA" species:9337 "Trichosurus vulpecula"
[GO:0033391 "chromatoid body" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033391 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG015893 EMBL:EU278597 Uniprot:B2C6E9
Length = 704
Score = 662 (238.1 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 156/403 (38%), Positives = 239/403 (59%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P I T+ +T L + I K Y K P+Q +P+I++GRD + A+TG
Sbjct: 254 VEVSGHDAPPAILTFEETDLCQTLNNDITKAGYTKLTPVQKYGIPIILAGRDLMACAQTG 313
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP+L H+ A+ P +I+APTREL+ QI + RKF+ VR
Sbjct: 314 SGKTAAFLLPILAHMMRDGVTASRFKDQQEPECIIVAPTRELINQIFLEARKFSFGTCVR 373
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ + I ++ +G I+ TPGR++DI+ G + L ++ YLV+DEADRM
Sbjct: 374 PVVIYGGTQLGHSIRQIMQGCNILCATPGRLMDII---GKEKIGLGQIRYLVLDEADRML 430
Query: 631 DMGFEPQITRIVQ----NIRPDRQTVLFSATFPR-QVEILARKVL-NKPVEI----QVGG 680
DMGF P++ +++ + RQT++FSATFPR + A + L N + + QVGG
Sbjct: 431 DMGFGPEMKKLISFPGMPSKEQRQTLMFSATFPRGNFKDWAGEFLKNLTICLVAVGQVGG 490
Query: 681 RSVVNKDITQLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY 739
D+ Q V +V S R +L+E+L E+ + ++FV +++K D + L +
Sbjct: 491 AC---SDVQQTVLQVGQYSKRE-KLVEILRNIGEE-RTMVFVETKKKADFIATFLCQEKI 545
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
S+HG ++Q +RE + DF+ C +L+ATSVAARGLD++ ++ VINFD P+ ++YV
Sbjct: 546 STTSIHGDREQREREQALGDFRCGKCPVLVATSVAARGLDIENVQHVINFDLPSTIDEYV 605
Query: 800 HRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVP 841
HR+GRTGR G G AI+F E D+ + LVK L ++Q P
Sbjct: 606 HRIGRTGRCGNTGKAISFFDPEPDSHLAQPLVKVLSDAQQGCP 648
Score = 46 (21.3 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 339 FTDGNNVESKKMDRKGDRRS 358
+ DGNN E+ R+G R S
Sbjct: 113 YQDGNNSEASGSSRRGGRGS 132
Score = 45 (20.9 bits), Expect = 7.7e-68, Sum P(2) = 7.7e-68
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 247 AGRN-WTLDRE--DSDDEEVPQTGKSETDMDADEEPKPSENQVG------DAMLVDSDGG 297
+GRN W + E +S D + P+ +EE + Q G D +LV+ G
Sbjct: 200 SGRNPWKSETEGGESGDIQGPKVTYIPPPPPENEEATFAHYQTGINFDKYDTILVEVSGH 259
Query: 298 SAAPAL 303
A PA+
Sbjct: 260 DAPPAI 265
>POMBASE|SPBC17D1.06 [details] [associations]
symbol:dbp3 "ATP-dependent RNA helicase Dbp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000027
"ribosomal large subunit assembly" evidence=ISO] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005730 "nucleolus" evidence=ISO;IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPBC17D1.06 GO:GO:0005524
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268804 KO:K14811 OrthoDB:EOG42JS0S
PIR:T39709 RefSeq:NP_596388.1 ProteinModelPortal:Q10202
STRING:Q10202 PRIDE:Q10202 EnsemblFungi:SPBC17D1.06.1
GeneID:2540213 KEGG:spo:SPBC17D1.06 OMA:DRILVFC NextBio:20801345
Uniprot:Q10202
Length = 578
Score = 660 (237.4 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 154/404 (38%), Positives = 240/404 (59%)
Query: 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLP 524
PI + + +++K+ E ++ NY++P PIQA P +++GRD +G+A+TGSGKT+AF +P
Sbjct: 165 PILQFDELDVSAKLREGLK--NYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIP 222
Query: 525 MLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584
L+++ + P L+++PTREL Q + ++ + ++ V VYGG+ ++Q
Sbjct: 223 ALQYLNGLSDNKSV--PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQA 280
Query: 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644
K + +++ TPGR++D++ + G I + +V YLV+DEADRM D GFE I I+ +
Sbjct: 281 RAAKNAS-VIIGTPGRLLDLI--NDGSI-DCSQVGYLVLDEADRMLDTGFEQDIRNIISH 336
Query: 645 IRPD------RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPE 697
PD RQTV FSAT+P V LA L PV+I +G + +++ITQ+VE+ +
Sbjct: 337 T-PDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDD 395
Query: 698 SDRFLRLLE-LLGEWYEKG----KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
R+L+ LL + G KILIFV +++ A L Y + +HG Q
Sbjct: 396 PRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEA-ARVEGTLARKYNVVGIHGDMSQGA 454
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
R ++DFKS C +L+AT VAARGLD+ +++LVIN P EDYVHR+GRTGRA KG
Sbjct: 455 RLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGRTGRANTKG 514
Query: 813 CAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN 856
AITF + +D ++ +LV L ++Q +P+ L + K+N
Sbjct: 515 TAITFFTPQDKSHAGELVNVLRQAKQDIPEGLFKFGTAVKPKLN 558
Score = 48 (22.0 bits), Expect = 6.0e-68, Sum P(2) = 6.0e-68
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 435 VKEIARMTPEEVSAYRKQL----ELKIHGKDVPKPIK 467
V+E+ R EE S RK+ E K H KD P K
Sbjct: 55 VEELKRSADEEASVKRKEKKSKHEHKKHKKDKPSADK 91
Score = 43 (20.2 bits), Expect = 2.0e-67, Sum P(2) = 2.0e-67
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 254 DREDSDDEEVPQTGKSET-----DMDADEEPKPSENQVGDA 289
DR D++ + GKS+T +++A+E K ++ +G A
Sbjct: 92 DRISKKDKKKSKKGKSKTKEESIEINAEEGAKIAQPAIGSA 132
Score = 38 (18.4 bits), Expect = 6.8e-67, Sum P(2) = 6.8e-67
Identities = 13/52 (25%), Positives = 28/52 (53%)
Query: 318 AFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
AF+ M VE+LK + + + +V+ K+ K + + + ++ K S++K
Sbjct: 45 AFLLKMAKRSVEELKRSAD----EEASVKRKEKKSKHEHKKH-KKDKPSADK 91
>UNIPROTKB|Q90ZF6 [details] [associations]
symbol:olvas "VASA" species:8090 "Oryzias latipes"
[GO:0043186 "P granule" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 HSSP:Q58083 HOVERGEN:HBG015893 EMBL:AB063484
RefSeq:NP_001098146.1 UniGene:Ola.181 ProteinModelPortal:Q90ZF6
SMR:Q90ZF6 GeneID:100049226 CTD:100049226 Uniprot:Q90ZF6
Length = 617
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 153/405 (37%), Positives = 242/405 (59%)
Query: 457 IHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSG 516
+ G ++P I T+ + L + I + Y KP P+Q LP+I +GRD + A+TGSG
Sbjct: 171 VSGTNLPAAIMTFEEAKLCESLENNISRSGYVKPTPVQKYGLPIISAGRDLMACAQTGSG 230
Query: 517 KTLAFVLPMLRHIKDQPPVAAG----DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572
KT AF+LP+L+ + A+ P +I+APTREL+ QI+ + RKF+ VR V
Sbjct: 231 KTAAFLLPILQQLMADGVAASRFSEIQEPEAVIVAPTRELINQIYQEARKFSFGTCVRPV 290
Query: 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632
VYGG Q+ E+++G ++ TPGR++D++ GK+ L +V +LV+DEADRM DM
Sbjct: 291 VVYGGVNTGYQMREIEKGCNVLCGTPGRLLDMI--GRGKV-GLSKVRHLVLDEADRMLDM 347
Query: 633 GFEPQITRIVQN----IRPDRQTVLFSATFPRQVEILARKVLNKP---VEIQVGGRSVVN 685
GFEP + R+V + + +RQT++FSATFP ++ LA L V + V G + +
Sbjct: 348 GFEPDMRRLVGSPGMPSKEERQTLMFSATFPEDIQRLAADFLKVDYLFVAVGVVGGACTD 407
Query: 686 KDITQLVEVR-PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSL 744
+ T L + + ++ L LL +G + ++FV ++ + D + L + P S+
Sbjct: 408 VEQTFLQVTKFNKREQLLDLLRTIGS----ERTMVFVETKRQADFIAAFLCQEKVPTTSI 463
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGR 804
HG ++Q +RE ++DF+S C +L+ATSVA+RGLD+ +++ V+NFD PN +DYVHR+GR
Sbjct: 464 HGDREQREREKALADFRSGKCPVLVATSVASRGLDIPDVQHVVNFDLPNTIDDYVHRIGR 523
Query: 805 TGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALA 848
TGR G G A++F + D++ + LV L ++Q VP L+ A
Sbjct: 524 TGRCGNTGRAVSFYDPDVDSQLARSLVGILAKAQQEVPSWLEESA 568
>WB|WBGene00006888 [details] [associations]
symbol:vbh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0032502 "developmental process"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0042006 "masculinization of hermaphroditic
germ-line" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003676 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
HOGENOM:HOG000268804 KO:K11594 OMA:DELLMEN EMBL:FO081614
GO:GO:0042006 RefSeq:NP_001021793.1 UniGene:Cel.16952
ProteinModelPortal:Q65XX1 SMR:Q65XX1 IntAct:Q65XX1
MINT:MINT-6669731 STRING:Q65XX1 PaxDb:Q65XX1 PRIDE:Q65XX1
EnsemblMetazoa:Y54E10A.9c.1 EnsemblMetazoa:Y54E10A.9c.2
GeneID:171888 KEGG:cel:CELE_Y54E10A.9 UCSC:Y54E10A.9a CTD:171888
WormBase:Y54E10A.9c InParanoid:Q65XX1 NextBio:873115
ArrayExpress:Q65XX1 Uniprot:Q65XX1
Length = 660
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 152/413 (36%), Positives = 243/413 (58%)
Query: 451 KQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGV 510
+ + +++ G VP I+ +++ G +ME + + Y KP P+Q ++P +++ RD +
Sbjct: 123 ENIPVEVSGDSVPAAIEHFNEAGFGPAVMENVNRSGYSKPTPVQKHSIPTLLANRDLMSC 182
Query: 511 AKTGSGKTLAFVLPMLRHI----KDQ-PPVAAGDG-----PVGLIMAPTRELVQQIHSDI 560
A+TGSGKT AF+LP+++HI D P A +G P L+++PTREL QIH +
Sbjct: 183 AQTGSGKTAAFLLPIIQHILAGGPDMVKPPAFTNGRRTYYPCALVLSPTRELAIQIHKEA 242
Query: 561 RKFAKVMGVRCVPVYGG-SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619
KF+ ++ +YGG Q++ L+ GT I++ TPGR+IDI+ G I L
Sbjct: 243 TKFSYKSNIQTAILYGGRENYRDQVNRLRAGTHILIATPGRLIDII--EQGFI-GLAGCR 299
Query: 620 YLVMDEADRMFDMGFEPQITRIV-QNIRPD--RQTVLFSATFPRQVEILARKVL-NKPVE 675
YLV+DEADRM DMGFEPQI +IV Q + P R T +FSATFP+++++LA+ L + +
Sbjct: 300 YLVLDEADRMLDMGFEPQIRKIVGQGMPPKTARTTAMFSATFPKEIQVLAKDFLKDNYIF 359
Query: 676 IQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL 735
+ VG +++I Q + E ++ L+E+L + + +L+FV ++ + L L
Sbjct: 360 LAVGRVGSTSENIEQRLLWVNEMEKRSNLMEILMNEHSENLVLVFVETKRGANELAYFLN 419
Query: 736 KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHY 795
+ +S+HG Q +RE + F+S C +L+AT+VAARGLD+ + VIN+D P
Sbjct: 420 RQQIRSVSIHGDLKQIERERNLELFRSGQCPILVATAVAARGLDIPNVRHVINYDLPGDS 479
Query: 796 EDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
++YVHR+GRTGR G G A +F ++++ DL + S Q VP+ L +A
Sbjct: 480 DEYVHRIGRTGRCGNLGIATSFFNDKNRGIGRDLKNLIVESNQEVPEWLHQVA 532
>ZFIN|ZDB-GENE-030131-1565 [details] [associations]
symbol:ddx3 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-030131-1565 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
KO:K11594 HOVERGEN:HBG015893 EMBL:BX545856 IPI:IPI00639693
RefSeq:NP_001119895.1 UniGene:Dr.104653 SMR:B0S6P6
Ensembl:ENSDART00000006867 GeneID:566947 KEGG:dre:566947 CTD:566947
OMA:IIMGNIN NextBio:20888452 Uniprot:B0S6P6
Length = 709
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 149/339 (43%), Positives = 217/339 (64%)
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPG 599
P+ L++APTREL QI+ + RKFA VR CV VYGG+ + QQI +L+RG ++V TPG
Sbjct: 315 PISLVLAPTRELALQIYDEARKFAYRSRVRPCV-VYGGADIGQQIRDLERGCHLLVATPG 373
Query: 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV-QNIRP---DRQTVLFS 655
R++D++ GKI L YLV+DEADRM DMGFEPQI RIV Q+ P RQT++FS
Sbjct: 374 RLVDMM--ERGKI-GLDYCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGSRQTMMFS 430
Query: 656 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKG 715
ATFP++++ILAR L + + + VG +++ITQ V E+D+ LL+LL +
Sbjct: 431 ATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDS 490
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
L+FV +++ DAL L + GY C S+HG + Q DRE + F+S C +++AT+VAA
Sbjct: 491 LTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSGRCPIMVATAVAA 550
Query: 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835
RGLD+ ++ VINFD P+ E+YVHR+GRTGR G G A +F +++++ + DL+ L
Sbjct: 551 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFYNDKNSNITKDLLDILVE 610
Query: 836 SEQVVPDDLKALADSFMAK-VNQGLEQAHGTGYGGSGFK 873
++Q VP L+ LA K N+G + G+G ++
Sbjct: 611 AKQEVPSWLENLAYEHQHKSTNRGRPKRFSGGFGARDYR 649
Score = 200 (75.5 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 62/207 (29%), Positives = 96/207 (46%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++H + IM I Y +P P+Q A+P+I + RD + A+TGSGKT
Sbjct: 215 GTNSPGHIESFHDVDMGEIIMGNITLSRYTRPTPVQKYAIPIIKTKRDLMACAQTGSGKT 274
Query: 519 LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS 578
AF+LP+L I + P A + V++ I + +Y +
Sbjct: 275 AAFLLPVLSQIYSEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEA 334
Query: 579 GVAQQISELKR-----GTEI--VVCTPGRMIDILCTSGGKITNLRR--------VTYLVM 623
S ++ G +I + R +L + G++ ++ YLV+
Sbjct: 335 RKFAYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVL 394
Query: 624 DEADRMFDMGFEPQITRIV-QNIRPDR 649
DEADRM DMGFEPQI RIV Q+ P +
Sbjct: 395 DEADRMLDMGFEPQIRRIVEQDTMPPK 421
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 146/377 (38%), Positives = 229/377 (60%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI-KD 531
GL+++++ IR+ Y +P P+Q QA+PVI+ RD + A+TG+GKT F LP+L+ +
Sbjct: 16 GLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVS 75
Query: 532 QPPVAAGDGPV--GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
+PP+ PV LI+ PTREL Q+ +R + K + ++ V+GG + QI+ L+R
Sbjct: 76 RPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRR 135
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G +I+V TPGR++D++ G + NL RV + V+DEADRM DMGF P I RI++ + R
Sbjct: 136 GVDILVATPGRLLDLV-NQG--VLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR 192
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE-LL 708
Q +LFSATF ++++ L K+L+ P I+V R+ IT +V + R LL ++
Sbjct: 193 QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHP-VDRQRKRELLSFMI 251
Query: 709 GE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
G W + +L+F ++ + L + L G ++HG K Q R ++ FK
Sbjct: 252 GSKNWRQ---VLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+L+AT VAARGLD+ +L VINF+ P+ +DYVHRVGRTGRA G AI+ +S ++ +
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLL 368
Query: 827 PDLVKALE--LSEQVVP 841
D+ K L+ + ++V+P
Sbjct: 369 RDIEKLLQSKMPQEVIP 385
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 146/377 (38%), Positives = 229/377 (60%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI-KD 531
GL+++++ IR+ Y +P P+Q QA+PVI+ RD + A+TG+GKT F LP+L+ +
Sbjct: 16 GLSAELLRAIREQGYVEPTPVQRQAIPVILQARDVMVTAQTGTGKTAGFTLPLLQRLFVS 75
Query: 532 QPPVAAGDGPV--GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
+PP+ PV LI+ PTREL Q+ +R + K + ++ V+GG + QI+ L+R
Sbjct: 76 RPPLQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRR 135
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G +I+V TPGR++D++ G + NL RV + V+DEADRM DMGF P I RI++ + R
Sbjct: 136 GVDILVATPGRLLDLV-NQG--VLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLLPESR 192
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE-LL 708
Q +LFSATF ++++ L K+L+ P I+V R+ IT +V + R LL ++
Sbjct: 193 QNLLFSATFSKEIKELTDKLLHSPALIEVARRNTAAARITHVVHP-VDRQRKRELLSFMI 251
Query: 709 GE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
G W + +L+F ++ + L + L G ++HG K Q R ++ FK
Sbjct: 252 GSKNWRQ---VLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQGKIR 308
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+L+AT VAARGLD+ +L VINF+ P+ +DYVHRVGRTGRA G AI+ +S ++ +
Sbjct: 309 VLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEVRLL 368
Query: 827 PDLVKALE--LSEQVVP 841
D+ K L+ + ++V+P
Sbjct: 369 RDIEKLLQSKMPQEVIP 385
>ZFIN|ZDB-GENE-030131-1927 [details] [associations]
symbol:ddx41 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 41" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS50158
PROSITE:PS51194 SMART:SM00343 SMART:SM00490
ZFIN:ZDB-GENE-030131-1927 GO:GO:0005524 GO:GO:0008270 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00620000087942
EMBL:CABZ01072950 EMBL:CABZ01072951 EMBL:CABZ01072952
IPI:IPI00961669 Ensembl:ENSDART00000061987 Bgee:F1QQ09
Uniprot:F1QQ09
Length = 473
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 160/435 (36%), Positives = 240/435 (55%)
Query: 450 RKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIG 509
RK+ + + G+ +P PIK++ + I++ ++K P PIQ Q +P I+SGRD IG
Sbjct: 20 RKKYHILVEGEGIPAPIKSFREMKFPQAILKGLKKKGIVHPTPIQIQGIPTILSGRDMIG 79
Query: 510 VAKTGSGKTLAFVLPMLRHIKDQP---PVAAGDGPVGLIMAPTRELVQQIHSDIRKF-AK 565
+A TGSGKTL F LP++ +Q P +GP GLI+ P+ + + H I ++ K
Sbjct: 80 IAFTGSGKTLVFTLPIIMFCLEQEKRLPFCKREGPYGLIICPSVNVAKHTHHGIIEYYCK 139
Query: 566 VM---G---VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619
++ G +RC GG V +Q+ +K + TPGR++D+L K+ +L
Sbjct: 140 LLEDEGAPQMRCALCIGGMSVKEQMEVVK------LATPGRLMDLL---NKKMVSLDICR 190
Query: 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
YL +DEADRM DMGFE I I + RQT+LFSAT P++++ A+ L KP+ I VG
Sbjct: 191 YLALDEADRMIDMGFEEDIRTIFSYFKGQRQTLLFSATMPKKIQNFAKSALVKPITINVG 250
Query: 680 GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY 739
+ D+ Q VE E + + LLE L + +LIF + DA+ LL G
Sbjct: 251 RAGAASLDVIQEVEYVKEEAKMVYLLECLQK--TPPPVLIFAEKKADVDAIHEYLLLKGV 308
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYV 799
+++HG KDQ +R I FK ++L+AT VA++GLD ++ V+N+D P E+YV
Sbjct: 309 EAVAIHGGKDQEERTKAIEAFKEGKKDVLVATDVASKGLDFPAIQHVVNYDMPEEIENYV 368
Query: 800 HRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQG 858
HR+GRTGR+G+ G A TFI++ D DL L ++Q VP L+ L ++ G
Sbjct: 369 HRIGRTGRSGKTGIATTFINKGCDESVLMDLKALLVEAKQKVPPVLQVLHTGDETMLDIG 428
Query: 859 LEQAHGTGYGGSGFK 873
E+ T GG G +
Sbjct: 429 GERGC-TFCGGLGHR 442
>UNIPROTKB|F1NL04 [details] [associations]
symbol:DDX4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000237 "leptotene" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007141 "male meiosis I"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0030317 "sperm motility" evidence=IEA] [GO:0032880 "regulation
of protein localization" evidence=IEA] [GO:0033391 "chromatoid
body" evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0048471 GO:GO:0032880 GO:GO:0003676 GO:GO:0030317
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0033391
GO:GO:0007141 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00620000087942 GO:GO:0000237 EMBL:AADN02054551
EMBL:AADN02054552 EMBL:AADN02054553 IPI:IPI00578446
Ensembl:ENSGALT00000038830 Uniprot:F1NL04
Length = 542
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 150/389 (38%), Positives = 230/389 (59%)
Query: 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+++ G D P P+ + + + + I K Y K P+Q ++PVI +GRD + A+TG
Sbjct: 155 VEMSGLDPPAPLLAFEEANFAQTLRKNISKTGYSKLTPVQKHSIPVIQAGRDLMSCAQTG 214
Query: 515 SGKTLAFVLPML-RHIKDQPPVAA---GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
SGKT AF+LP++ R +KD +A P +I+APTREL+ QI + RKF +R
Sbjct: 215 SGKTAAFLLPIVDRMMKDGVTASAFQKQQEPQCIIVAPTRELINQIFLEARKFVYGTCIR 274
Query: 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
V +YGG+ I ++ +G I+ TPGR++DI+ GKI+ L V YLV+DEADRM
Sbjct: 275 PVVIYGGTQTGHSIRQIMQGCNILCATPGRLLDII--EKGKIS-LVEVKYLVLDEADRML 331
Query: 631 DMGFEPQITRIVQNIR-PD---RQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVN 685
DMGF + +++ P RQT++FSATFP +V+ LA + L + + +G
Sbjct: 332 DMGFGLDMKKLISYPEMPSKDRRQTLMFSATFPEEVQRLAGEFLKTDYIFLVIGNTCGAC 391
Query: 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
D+ Q + P + +L+E+L + + ++FV +++K D L L + P S+H
Sbjct: 392 SDVQQNILQVPRLSKRDKLIEILQSTGGE-RTMVFVDTKKKADYLAAFLCQENLPSTSIH 450
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805
G ++Q +RE + DF+S C +L+ATSVA+RGLD++ ++ VINFD PN EDYVHR+GRT
Sbjct: 451 GDREQREREIALRDFRSGKCQILVATSVASRGLDIENVQHVINFDLPNTIEDYVHRIGRT 510
Query: 806 GRAGRKGCAITFISEE-DAKYSPDLVKAL 833
GR G G A++F ++ D L+K L
Sbjct: 511 GRCGNTGKAVSFFDDQSDGHLVQSLLKVL 539
>UNIPROTKB|Q9KLH6 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD box
family" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 149/390 (38%), Positives = 238/390 (61%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ Q GL S+++ T+ +L P PIQ QA+P ++ G+D + A+TG+GKT AF LP+++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 528 HIKDQP-PVAAGDGPV-GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
+QP A + L++ PTREL QQ+ ++ +AK ++ V VYGG+ + Q++
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
L+ G +I++ TPGR++D + K L +V LV+DEADRM DMGF P + R+++ +
Sbjct: 127 HLRGGVDILIATPGRLLD---HAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRL 704
P RQT+ FSATF +++ +A +++ P+E+QV + + + Q+V V + R L L
Sbjct: 184 SPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKREL-L 242
Query: 705 LELLGE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
L+G W + +L+F +++ DAL +L G +S++G K Q R+ + DFK+
Sbjct: 243 SYLIGSKNWQQ---VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA 299
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
LIAT VAARGLD+ +LE V+N+D P EDYVHR+GRTGRAG G A++ +S ++
Sbjct: 300 GKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Query: 823 AKYSPDLVKALE--LSEQVVPDDLKALADS 850
P L +A+E L+ ++ + LK S
Sbjct: 360 ---QPQL-EAIERLLNTRLPQEWLKGFEPS 385
>TIGR_CMR|VC_A0768 [details] [associations]
symbol:VC_A0768 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K11927
OMA:LECVINY PIR:H82418 RefSeq:NP_233154.1 ProteinModelPortal:Q9KLH6
DNASU:2612338 GeneID:2612338 KEGG:vch:VCA0768 PATRIC:20086092
ProtClustDB:CLSK869757 Uniprot:Q9KLH6
Length = 422
Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
Identities = 149/390 (38%), Positives = 238/390 (61%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ Q GL S+++ T+ +L P PIQ QA+P ++ G+D + A+TG+GKT AF LP+++
Sbjct: 7 TFSQLGLDSRLLNTLSELGIANPTPIQQQAIPHVLQGKDVLAGAQTGTGKTAAFGLPLIQ 66
Query: 528 HIKDQP-PVAAGDGPV-GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
+QP A + L++ PTREL QQ+ ++ +AK ++ V VYGG+ + Q++
Sbjct: 67 RFIEQPWQREANSKEIRALVLVPTRELAQQVLDSLQAYAKGTELKIVAVYGGTSMKVQLN 126
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
L+ G +I++ TPGR++D + K L +V LV+DEADRM DMGF P + R+++ +
Sbjct: 127 HLRGGVDILIATPGRLLD---HAHVKSLFLGKVEVLVLDEADRMLDMGFMPDLQRVLRRL 183
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRL 704
P RQT+ FSATF +++ +A +++ P+E+QV + + + Q+V V + R L L
Sbjct: 184 SPLRQTLFFSATFDSKIKAVAYRIMRDPIEVQVTPSNSTAETVQQMVYPVDKKRKREL-L 242
Query: 705 LELLGE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
L+G W + +L+F +++ DAL +L G +S++G K Q R+ + DFK+
Sbjct: 243 SYLIGSKNWQQ---VLVFTKTRQGSDALAEELKLDGIKAVSINGDKSQGARQKALDDFKA 299
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
LIAT VAARGLD+ +LE V+N+D P EDYVHR+GRTGRAG G A++ +S ++
Sbjct: 300 GKVRALIATDVAARGLDIAQLEQVVNYDMPFKAEDYVHRIGRTGRAGLAGLAVSLLSHDE 359
Query: 823 AKYSPDLVKALE--LSEQVVPDDLKALADS 850
P L +A+E L+ ++ + LK S
Sbjct: 360 ---QPQL-EAIERLLNTRLPQEWLKGFEPS 385
>CGD|CAL0001091 [details] [associations]
symbol:orf19.672 species:5476 "Candida albicans" [GO:0005682
"U5 snRNP" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116 RefSeq:XP_713805.1
RefSeq:XP_713845.1 ProteinModelPortal:Q59W52 GeneID:3644491
GeneID:3644552 KEGG:cal:CaO19.672 KEGG:cal:CaO19.8289
Uniprot:Q59W52
Length = 581
Score = 407 (148.3 bits), Expect = 1.7e-65, Sum P(2) = 1.7e-65
Identities = 80/221 (36%), Positives = 135/221 (61%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K + MT + +++ + GK++P P++ W++ + K++ I +L YE+P +Q
Sbjct: 137 KNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQR 196
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK--DQPPVA---AGDGPVGLIMAPTR 550
++P+ + RD +GVA+TGSGKTLAF++P+L +I D+ + + PVGLI+APTR
Sbjct: 197 ASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTR 256
Query: 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSG 609
EL QI + KF K +G + +P+ GG I+++ + G ++V TPGR++D +
Sbjct: 257 ELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI---E 313
Query: 610 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
KI +L + LVMDEADRM DMGFE + +++ + ++Q
Sbjct: 314 RKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQ 354
Score = 319 (117.4 bits), Expect = 1.7e-65, Sum P(2) = 1.7e-65
Identities = 71/201 (35%), Positives = 118/201 (58%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE----VRPESDRFLRL 704
R T++F+AT VE L +K L P + +GG +I+Q E E+ +F +L
Sbjct: 369 RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEATKFNKL 428
Query: 705 LELL-GEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
++++ W E I+IF + + CD+L ++L + + +HG+K Q RE I++F+
Sbjct: 429 IKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFR 488
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
++ +LIAT VAARG+D+ + LVIN+ +++Y+HR+GRTGRAG G + TFIS++
Sbjct: 489 NHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQ 548
Query: 822 DAKYSPDLVKALELSEQVVPD 842
D + L K L+ + +PD
Sbjct: 549 DTEIFTPLKKFLKKGGKRLPD 569
>UNIPROTKB|Q59W52 [details] [associations]
symbol:PRP28 "Pre-mRNA-splicing ATP-dependent RNA helicase
PRP28" species:237561 "Candida albicans SC5314" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0001091
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12858 EMBL:AACQ01000117 EMBL:AACQ01000116
RefSeq:XP_713805.1 RefSeq:XP_713845.1 ProteinModelPortal:Q59W52
GeneID:3644491 GeneID:3644552 KEGG:cal:CaO19.672
KEGG:cal:CaO19.8289 Uniprot:Q59W52
Length = 581
Score = 407 (148.3 bits), Expect = 1.7e-65, Sum P(2) = 1.7e-65
Identities = 80/221 (36%), Positives = 135/221 (61%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K + MT + +++ + GK++P P++ W++ + K++ I +L YE+P +Q
Sbjct: 137 KNLEEMTDRDWRIFKEDYNITTKGKNIPNPLRYWNEGSINDKLVSIISQLGYEEPTSVQR 196
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK--DQPPVA---AGDGPVGLIMAPTR 550
++P+ + RD +GVA+TGSGKTLAF++P+L +I D+ + + PVGLI+APTR
Sbjct: 197 ASIPLALKKRDVVGVAETGSGKTLAFLIPVLNYILSIDENYLKYEKISNEPVGLILAPTR 256
Query: 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSG 609
EL QI + KF K +G + +P+ GG I+++ + G ++V TPGR++D +
Sbjct: 257 ELALQITKEAEKFCKKLGYQVLPIIGGHHYQDTINKIDQTGVHLIVATPGRLVDSI---E 313
Query: 610 GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
KI +L + LVMDEADRM DMGFE + +++ + ++Q
Sbjct: 314 RKIVDLSKCYCLVMDEADRMIDMGFEKDLNKVLDKLPTEKQ 354
Score = 319 (117.4 bits), Expect = 1.7e-65, Sum P(2) = 1.7e-65
Identities = 71/201 (35%), Positives = 118/201 (58%)
Query: 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE----VRPESDRFLRL 704
R T++F+AT VE L +K L P + +GG +I+Q E E+ +F +L
Sbjct: 369 RSTMMFTATISPTVEKLTKKYLIDPGYLYIGGAGEALDNISQSFEFLSSATTEATKFNKL 428
Query: 705 LELL-GEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
++++ W E I+IF + + CD+L ++L + + +HG+K Q RE I++F+
Sbjct: 429 IKIIRSHWRVTENPLIIIFANFKHVCDSLSQELSSNDINNVVIHGSKSQDMREQAITNFR 488
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
++ +LIAT VAARG+D+ + LVIN+ +++Y+HR+GRTGRAG G + TFIS++
Sbjct: 489 NHESEVLIATDVAARGIDIPNVTLVINYQMVKKFDEYIHRIGRTGRAGNLGESFTFISDQ 548
Query: 822 DAKYSPDLVKALELSEQVVPD 842
D + L K L+ + +PD
Sbjct: 549 DTEIFTPLKKFLKKGGKRLPD 569
>TIGR_CMR|GSU_0914 [details] [associations]
symbol:GSU_0914 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE017180
GenomeReviews:AE017180_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 OMA:KHRAKRV RefSeq:NP_951968.1
ProteinModelPortal:Q74EP8 GeneID:2687174 KEGG:gsu:GSU0914
PATRIC:22024603 ProtClustDB:CLSK924451
BioCyc:GSUL243231:GH27-925-MONOMER Uniprot:Q74EP8
Length = 447
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 151/368 (41%), Positives = 216/368 (58%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
G + I YE P PIQAQA+P +M+GRD +G+A+TG+GKT AF LP+L ++
Sbjct: 7 GFHPAVATGIAAAGYETPTPIQAQAIPAVMAGRDVMGLAQTGTGKTAAFALPILHRLQQ- 65
Query: 533 PPVAAGD-GPV-GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
G+ G V L++APTREL +QI+ + +R V VYGG GV Q+ +LK G
Sbjct: 66 -----GERGRVRALVIAPTRELAEQINDSFVTLGRQTRLRSVTVYGGVGVNPQVQKLKAG 120
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
E+VV PGR++D + G I +L R+ LV+DEAD+MFDMGF P I R+++++ P RQ
Sbjct: 121 AEVVVACPGRLLDHIAQ--GTI-DLSRLEVLVLDEADQMFDMGFLPDIRRVLKHLPPRRQ 177
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR--LLELL 708
T+LFSAT P + LA+ +L PV +QVG V +T + P LLELL
Sbjct: 178 TLLFSATMPIDIRTLAQDILVDPVTVQVG---TVAPAVTVAHALYPVEQHLKTPLLLELL 234
Query: 709 GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768
+ +LIF ++ + L L K GY SL G Q R++ + F+ +L
Sbjct: 235 RHT-DTESVLIFTRTKHRAKRLGEQLEKAGYRAASLQGNLSQNRRQAALDGFRDGTFQIL 293
Query: 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828
+AT +AARG+DV ++ VIN+D P+ E Y+HR+GRTGRA R G A T ++ +D
Sbjct: 294 VATDIAARGIDVSQVSHVINYDIPDTAEAYIHRIGRTGRAARSGDAFTLVTSDDGA---- 349
Query: 829 LVKALELS 836
+V+A+E S
Sbjct: 350 MVRAIERS 357
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 143/360 (39%), Positives = 211/360 (58%)
Query: 477 KIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA 536
+I+ I Y+K PIQ QA+P I G+D + A+TG+GKT AF LP+L+ + + P
Sbjct: 11 EILRAISDCGYQKMTPIQQQAIPAIRRGQDVLASAQTGTGKTAAFALPILQKMVENPSET 70
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVC 596
LI+ PTREL Q+ ++ ++K + + +YGG V Q +LKRG +I+V
Sbjct: 71 LKSNTRVLILTPTRELAAQVAENVEAYSKYLNFSVLTIYGGVKVETQAQKLKRGADIIVA 130
Query: 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656
TPGR+++ L +L V +LV+DEADRM DMGF I +I+Q + RQ +LFSA
Sbjct: 131 TPGRLLEHLTACN---LSLSSVDFLVLDEADRMLDMGFSADIQKILQAVNKKRQNLLFSA 187
Query: 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDRFLRLLELLGE--WYE 713
TF V+ LA +++ KP I ++ ++Q+V V R L L EL+G+ W +
Sbjct: 188 TFSSAVKKLANEMMIKPQVISADKQNTTADTVSQVVYPVEQRRKREL-LSELIGKKNWQQ 246
Query: 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773
+L+F +++ D L ++L G P +HG K Q R + +F S +L+AT V
Sbjct: 247 ---VLVFTATRDAADTLVKELNLDGIPSEVVHGEKAQGSRRRALREFVSGKVRVLVATEV 303
Query: 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833
AARGLD+ LE V+NFD P EDYVHR+GRTGRAG+ G AI+F+S E+ + D+ K +
Sbjct: 304 AARGLDIPSLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGVAISFVSREEERTLADIEKLI 363
>WB|WBGene00002244 [details] [associations]
symbol:laf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0042006
"masculinization of hermaphroditic germ-line" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0043186 "P granule"
evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
HOGENOM:HOG000268804 KO:K11594 GO:GO:0042006 EMBL:FO081822
EMBL:FJ348231 RefSeq:NP_001254859.1 UniGene:Cel.25045
ProteinModelPortal:D0PV95 SMR:D0PV95 GeneID:190611
KEGG:cel:CELE_Y71H2AM.19 CTD:190611 WormBase:Y71H2AM.19b
ArrayExpress:D0PV95 Uniprot:D0PV95
Length = 708
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 151/443 (34%), Positives = 251/443 (56%)
Query: 451 KQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGV 510
+++ ++ G DVP+PI + L I E I+ Y++P P+Q ++P + GRD +
Sbjct: 215 EEIPVEATGDDVPQPISLFSDLSLHEWIEENIKTAGYDRPTPVQKYSIPALQGGRDLMSC 274
Query: 511 AKTGSGKTLAFVLPMLRHI-KDQPP-----VAAGDG-----PVGLIMAPTRELVQQIHSD 559
A+TGSGKT AF++P++ I +D P V + G P L+++PTREL QI ++
Sbjct: 275 AQTGSGKTAAFLVPLVNAILQDGPDAVHRSVTSSGGRKKQYPSALVLSPTRELSLQIFNE 334
Query: 560 IRKFAKVMGVRCVPVYGG-SGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618
RKFA + +YGG QI +L+ G I++ TPGR+ID++ G I +
Sbjct: 335 SRKFAYRTPITSALLYGGRENYKDQIHKLRLGCHILIATPGRLIDVM--DQGLI-GMEGC 391
Query: 619 TYLVMDEADRMFDMGFEPQITRIVQ-NIRPDRQ---TVLFSATFPRQVEILARKVLNKP- 673
YLV+DEADRM DMGFEPQI +IV+ N P ++ T +FSATFP+++++LA+ L +
Sbjct: 392 RYLVLDEADRMLDMGFEPQIRQIVECNRMPSKEERITAMFSATFPKEIQLLAQDFLKENY 451
Query: 674 VEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
V + VG +++I Q + E ++ L++LL + L+FV ++ L
Sbjct: 452 VFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYY 511
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
L + Y +++HG Q +RE + F++ +L+AT+VAARGLD+ ++ VIN+D P+
Sbjct: 512 LNRQNYEVVTIHGDLKQFEREKHLDLFRTGTAPILVATAVAARGLDIPNVKHVINYDLPS 571
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMA 853
++YVHR+GRTGR G G A +F ++++ + +L+ + + Q +PD L+ ++ +
Sbjct: 572 DVDEYVHRIGRTGRVGNVGLATSFFNDKNRNIARELMDLIVEANQELPDWLEGMSGDMRS 631
Query: 854 KVNQGLEQAHGTG--YGGSGFKF 874
G G +GG ++
Sbjct: 632 GGGYRGRGGRGNGQRFGGRDHRY 654
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 621 (223.7 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 156/428 (36%), Positives = 236/428 (55%)
Query: 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520
D KT+ + L ++E+I + + KP PIQ++A+P + G+D IG+A+TGSGKT A
Sbjct: 117 DAELKFKTFKELNLVPDLLESIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAA 176
Query: 521 FVLPMLRHI-KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579
F +P+L+ + Q P A L++APTREL QI MG+R + GG
Sbjct: 177 FAIPILQSLWHAQQPYFA------LVLAPTRELTFQIKDTFDALGSSMGLRSSCIVGGMD 230
Query: 580 VAQQISELKRGTEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQI 638
+ Q +L R ++V TPGR++D L T G + NL+ YLVMDEADR+ DM F P +
Sbjct: 231 MMDQARDLMRKPHVIVATPGRIMDHLEHTKGFSLKNLK---YLVMDEADRLLDMDFGPAL 287
Query: 639 TRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES 698
+I++ I R T LFSAT ++E L R L+ PV + V + ++ Q + + +
Sbjct: 288 DKILKVIPIKRTTYLFSATMTNKIEKLQRASLHNPVRVAVSSKYQTADNLVQSMMLVNDG 347
Query: 699 DRFLRLLELLGEWYEKGKILIFV----HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE 754
+ L+ LL E+ K I++F H+Q AL +L G+ + LHG Q+ R
Sbjct: 348 YKNTILIHLLNEFMGKS-IIVFTRTVAHAQRT--ALLARIL--GFNAVPLHGQLSQSQRL 402
Query: 755 STISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA 814
+++ FKSN N+L+AT VAARGLD+ +++VIN+D P + Y+HRVGRT RAGR G +
Sbjct: 403 GSLNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKS 462
Query: 815 ITFISEEDAK-Y---SPDLVKALELSEQVVPDDLKAL---ADSFMAKVNQGLEQAHGTGY 867
I+ I++ D + Y L K L ++ + L AL D A+ + ++ H
Sbjct: 463 ISLITQYDLEMYLRIESVLGKKLPKEDKPPKEVLDALHVHVDKATAEAIRQTKEIHDKRN 522
Query: 868 GGSGFKFN 875
GG G + N
Sbjct: 523 GGGGRRRN 530
Score = 46 (21.3 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 463 PKPIKTWH-----QTGLTSKIMETIRKLNYEKPMP--IQAQAL 498
P+ I T H G+T K +++++ L+Y K + I+ QAL
Sbjct: 34 PRIINTVHLIIMSSKGITKKKVKSLKNLDYTKKLAEKIKQQAL 76
>TIGR_CMR|CPS_3401 [details] [associations]
symbol:CPS_3401 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_270076.1 ProteinModelPortal:Q47YP4
STRING:Q47YP4 GeneID:3521057 KEGG:cps:CPS_3401 PATRIC:21469753
OMA:HLIKEHQ ProtClustDB:CLSK907013
BioCyc:CPSY167879:GI48-3430-MONOMER Uniprot:Q47YP4
Length = 432
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 149/409 (36%), Positives = 237/409 (57%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ + GL + ++ + +L Y +P PIQA+A+P + +GRD I A TGSGKT F LPML+
Sbjct: 9 TFTELGLITPLLARLAELEYHQPTPIQARAIPSVFAGRDLIAGANTGSGKTATFALPMLQ 68
Query: 528 HIKDQPPVAA----GDGPVGLIMAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVA 581
+++ + G+ GL++ PTREL +Q+ I+ +A ++ + V+GG V
Sbjct: 69 KLREDISSGSKNSKGNFVTGLVLVPTRELAKQVADSIKSYAVHFNGEIKTLAVFGGVSVN 128
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
Q+ L+ G +I+V TPGR++D++ ++ K L +V LV+DEADRM +GF ++T +
Sbjct: 129 IQMLALRGGVDILVATPGRLLDLISSNAIK---LDKVKTLVLDEADRMLSLGFTEELTAL 185
Query: 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 701
+ +QT+LFSATFP QV L +++LN P+EIQ+ +S + Q V + ++
Sbjct: 186 LALTPKKKQTLLFSATFPEQVTTLTQELLNNPIEIQL--QSADASTLVQRVFTVNKGEKT 243
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
L L+ + + + LIFV+++ C+ L L K G HG K Q++R + FK
Sbjct: 244 AVLAHLIQQEQWR-QALIFVNAKHHCEHLAEKLAKRGITAAVFHGDKGQSERSRVLDGFK 302
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
+ +LIAT +AARGLD+++L +VINF+ P DY+HR+GR+GRAG G AI+ I E
Sbjct: 303 AGDIEVLIATDIAARGLDIEKLPVVINFNLPRSPSDYMHRIGRSGRAGEVGLAISLIDHE 362
Query: 822 DAKYSPDLVKALELS---EQVVPDDLKALA-DSFMAKVNQGLEQAHGTG 866
D + + K + EQV + + DS +A V + + GTG
Sbjct: 363 DYHHFSVIEKKNKFRLKREQVEGFEAAEITGDSILA-VEKPMAAPEGTG 410
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
Identities = 154/404 (38%), Positives = 238/404 (58%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ GL + I+E + L YEKP PIQA+ +P +++GRD +G+A+TGSGKT AF LP+L+
Sbjct: 7 TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQ 66
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISE 586
++ P + A P L++APTREL Q+ + F+K M GV V +YGG Q+
Sbjct: 67 NL--DPELKA---PQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA 121
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L++G +IVV TPGR++D L G + +L +++ LV+DEAD M MGF + I+ I
Sbjct: 122 LRQGPQIVVGTPGRLLDHL--KRGTL-DLSKLSGLVLDEADEMLRMGFIEDVETIMAQIP 178
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ---LVEVRPESDRFLR 703
QT LFSAT P + + R+ + +P E+++ DI+Q V +++ +R
Sbjct: 179 EGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVR 238
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LE E ++ +IFV ++ + L ++GY +L+G +Q RE T+ K
Sbjct: 239 FLE--AEDFDAA--IIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG 294
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
++LIAT VAARGLDV+ + LV+N+D P E YVHR+GRTGRAGR G A+ F+ +
Sbjct: 295 RLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRER 354
Query: 824 KYSPDLVKALELS--EQVVPD-DL--KALADSFMAKVNQGLEQA 862
+ ++ + ++L+ E +P+ +L K + F AKV Q LE +
Sbjct: 355 RLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESS 398
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 130/363 (35%), Positives = 216/363 (59%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL++ + + + + Y+ P PIQAQA+P +++G+D + A+TG+GKT F LP+L +
Sbjct: 7 GLSAPLQKAVSEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKG 66
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
+G L++ PTREL Q+ + + K + +R V+GG + QI++L+ G +
Sbjct: 67 HKAKSGQTRA-LVLTPTRELAAQVGESVETYGKYLPLRSAVVFGGVPINPQINKLRHGVD 125
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
++V TPGR++D++ + K L LV+DEADRM DMGF I +I+ + RQ +
Sbjct: 126 VLVATPGRLLDLVQQNAVKFNQLE---ILVLDEADRMLDMGFIRDIKKILALLPAKRQNL 182
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE-- 710
+FSATF ++ LA+ ++N PVEI V R+ + Q + ++ + L++L+ +
Sbjct: 183 MFSATFSDEIRELAKGLVNHPVEISVTPRNAAATTVKQWICPVDKTQKSALLIQLIKQEN 242
Query: 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
W + +L+F ++ + L + L++ ++HG K Q R ++DFKS +L+A
Sbjct: 243 WQQ---VLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVA 299
Query: 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830
T +AARGLD+ +L V+NFD PN EDYVHR+GRTGRAG G A++ +S E+ K D+
Sbjct: 300 TDIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGATGQAVSLVSSEEIKLLKDIE 359
Query: 831 KAL 833
+ +
Sbjct: 360 RLI 362
>UNIPROTKB|I3LNN1 [details] [associations]
symbol:DDX23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005886
GO:GO:0005524 GO:GO:0005682 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00690000102171 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:PIRNWKE Ensembl:ENSSSCT00000027880 Uniprot:I3LNN1
Length = 801
Score = 453 (164.5 bits), Expect = 9.1e-63, Sum P(4) = 9.1e-63
Identities = 93/219 (42%), Positives = 133/219 (60%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQA 495
K++ MT + +R+ + G +P PI++W + L I+E I K Y++P PIQ
Sbjct: 360 KKLDEMTDRDWRIFREDYSITTKGGKIPNPIRSWKDSSLPPHILEVIDKCGYKEPTPIQR 419
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV----AAGDGPVGLIMAPTRE 551
QA+P+ + RD IGVA+TGSGKT AF++P+L I P + + GP +I+APTRE
Sbjct: 420 QAIPIGLQNRDIIGVAETGSGKTAAFLIPLLVWITTLPKIDRIEESDQGPYAIILAPTRE 479
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK 611
L QQI + KF K +G+R V V GG Q L+ G EIV+ TPGR+ID+L +
Sbjct: 480 LAQQIEEETIKFGKPLGIRPVAVIGGISREDQGFRLRMGCEIVIATPGRLIDVL---ENR 536
Query: 612 ITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
L R TY+V+DEADRM DMGFEP + +I++++ Q
Sbjct: 537 YLVLSRCTYVVLDEADRMIDMGFEPDVQKILEHMPVSNQ 575
Score = 249 (92.7 bits), Expect = 9.1e-63, Sum P(4) = 9.1e-63
Identities = 46/108 (42%), Positives = 73/108 (67%)
Query: 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDY 798
Y +LHG K Q RE +S+ K+ ++L+AT VA RG+D++++ +V+N+D + EDY
Sbjct: 670 YNACTLHGGKGQEQREFALSNLKAGAKDILVATDVAGRGIDIQDVSMVVNYDMAKNIEDY 729
Query: 799 VHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA-LELSEQVVPDDLK 845
+HR+GRTGRAG+ G AITF+++ED+ +L +A LE +P L+
Sbjct: 730 IHRIGRTGRAGKSGVAITFLTKEDSAVFYELKQAILESPVSAIPPALE 777
Score = 43 (20.2 bits), Expect = 9.1e-63, Sum P(4) = 9.1e-63
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 254 DREDS---DDEEVPQTGKSETDMDADEEPKPSENQ 285
DR+ S D+ + +T E D D D + PS+++
Sbjct: 10 DRDASPSKDERKRSRTPDRERDRDRDRKSSPSKDR 44
Score = 40 (19.1 bits), Expect = 9.1e-63, Sum P(4) = 9.1e-63
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 346 ESKKMDRKGDRRSNGEQPK-KSSNKSLGR 373
+ +K R DRR G + + +S +KS R
Sbjct: 42 KDRKRHRSRDRRRGGSRSRSRSRSKSTER 70
>FB|FBgn0263231 [details] [associations]
symbol:bel "belle" species:7227 "Drosophila melanogaster"
[GO:0007286 "spermatid development" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0043186 "P granule" evidence=IDA] [GO:0007283
"spermatogenesis" evidence=IMP] [GO:0002168 "instar larval
development" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0016442 "RNA-induced silencing complex" evidence=IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0043025 "neuronal cell body" evidence=IDA] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:AE014297
GO:GO:0005524 GO:GO:0005875 GO:GO:0016246 GO:GO:0007286
GO:GO:0005811 GO:GO:0043025 GO:GO:0048477 GO:GO:0003723
GO:GO:0000070 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0002168 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 KO:K11594 HSSP:P09052 EMBL:AY089613
RefSeq:NP_536783.1 UniGene:Dm.7823 ProteinModelPortal:Q9VHP0
SMR:Q9VHP0 IntAct:Q9VHP0 STRING:Q9VHP0 PaxDb:Q9VHP0 PRIDE:Q9VHP0
EnsemblMetazoa:FBtr0081888 GeneID:45826 KEGG:dme:Dmel_CG9748
UCSC:CG9748-RA CTD:100035747 FlyBase:FBgn0263231 InParanoid:Q9VHP0
OMA:TILWVYE OrthoDB:EOG4DNCKG PhylomeDB:Q9VHP0 GenomeRNAi:45826
NextBio:838377 Bgee:Q9VHP0 Uniprot:Q9VHP0
Length = 798
Score = 618 (222.6 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 142/345 (41%), Positives = 217/345 (62%)
Query: 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600
P+GL++APTREL QI + +KFA +R +YGG+ ++Q+ EL RG ++V TPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ--NIRP--DRQTVLFSA 656
+ D++ + GK+ L + +LV+DEADRM DMGFEPQI RIV+ N+ P RQT++FSA
Sbjct: 439 LEDMI--TRGKV-GLENIRFLVLDEADRMLDMGFEPQIRRIVEQLNMPPTGQRQTLMFSA 495
Query: 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL-----GEW 711
TFP+Q++ LA L+ + + VG +++ITQ + E D+ LL+LL G
Sbjct: 496 TFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGPE 555
Query: 712 YEKGKI-LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
Y K + LIFV +++ D+L L + +P S+HG + Q +RE + F+S C +L+A
Sbjct: 556 YTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRSGDCPILVA 615
Query: 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830
T+VAARGLD+ ++ VINFD P+ E+YVHR+GRTGR G G A +F +E++ DL+
Sbjct: 616 TAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICSDLL 675
Query: 831 KALELSEQVVPDDLKALADSFMAKVNQGLEQA-HGTG--YGGSGF 872
+ L ++Q +P ++ ++ + + G ++A G G YGG GF
Sbjct: 676 ELLIETKQEIPSFMEDMSSD---RGHGGAKRAGRGGGGRYGG-GF 716
Score = 482 (174.7 bits), Expect = 2.0e-43, P = 2.0e-43
Identities = 116/308 (37%), Positives = 183/308 (59%)
Query: 415 SIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGL 474
S VD++K+ + R +E+ + T Y + + ++ G++VP I ++ L
Sbjct: 247 SNVDYTKLGARDERLE--VELFGVGN-TGINFDKY-EDIPVEATGQNVPPNITSFDDVQL 302
Query: 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD--- 531
T I + Y+KP P+Q A+P+I++GRD + A+TGSGKT AF++P+L + +
Sbjct: 303 TEIIRNNVALARYDKPTPVQKHAIPIIINGRDLMACAQTGSGKTAAFLVPILNQMYELGH 362
Query: 532 -QPPVAAGDG------PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584
PP + P+GL++APTREL QI + +KFA +R +YGG+ ++Q+
Sbjct: 363 VPPPQSTRQYSRRKQYPLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQM 422
Query: 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ- 643
EL RG ++V TPGR+ D++ + GK+ L + +LV+DEADRM DMGFEPQI RIV+
Sbjct: 423 RELDRGCHLIVATPGRLEDMI--TRGKV-GLENIRFLVLDEADRMLDMGFEPQIRRIVEQ 479
Query: 644 -NIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700
N+ P RQT++FSATFP+Q++ LA L+ + + VG +++ITQ + E D+
Sbjct: 480 LNMPPTGQRQTLMFSATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDK 539
Query: 701 FLRLLELL 708
LL+LL
Sbjct: 540 RSYLLDLL 547
Score = 40 (19.1 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 328 VEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGED 379
VE V P+ T ++V+ ++ R + ++P ++ II G D
Sbjct: 283 VEATGQNVPPNITSFDDVQLTEIIRNNVALARYDKPTPVQKHAIPIIINGRD 334
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 591 (213.1 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 131/358 (36%), Positives = 204/358 (56%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
TW GL + + +L ++ P IQ +A+PV + G+D IG+A+TGSGKT AF LP+L
Sbjct: 62 TWKDLGLNEALCQACDELKWKAPSKIQREAIPVALQGKDVIGLAETGSGKTGAFALPILH 121
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ + P L++ PTREL QI +G++C V GG + Q +L
Sbjct: 122 ALLENP-----QRYFALVLTPTRELAFQIGEQFEALGSGIGIKCCVVVGGMDMVAQGLQL 176
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
+ I++ TPGR++D L G NL+ + YLVMDEADR+ +M FE ++ +I++ +
Sbjct: 177 AKKPHIIIATPGRLVDHLENMKG--FNLKAIKYLVMDEADRILNMDFEVELDKILKVLPR 234
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707
+R+T LFSAT ++V+ L R L PV+++V + + + Q P + + L+ +
Sbjct: 235 ERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQTVEQLQQSYLFIPVKYKDVYLVHI 294
Query: 708 LGEWYEKGKILIFV---HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764
L E +IF ++ K + R L G + LHG Q R + ++ FK+
Sbjct: 295 LNE-LAGNSFMIFCSTCNNTVKTALMLRAL---GLAAIPLHGQMSQNKRLAALNKFKAKN 350
Query: 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
++LI+T VA+RGLD+ +++V+NFD P H +DY+HRVGRT RAGR G AIT +S+ D
Sbjct: 351 RSILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITLVSQYD 408
Score = 67 (28.6 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 24/83 (28%), Positives = 42/83 (50%)
Query: 256 EDSDDEEVP-QTGKSETDMDADEEPKPSEN--QVGD---AMLVDSDGGSAAPALQIGAAE 309
E S+DE+ QT E D+ ++EE + +N + GD A+ + D GS + AAE
Sbjct: 3 ETSEDEQTQLQTSDEEEDLGSEEEQEDEDNNHKEGDSEAALSGEDDKGS-----EDDAAE 57
Query: 310 DEDIDPLDAFMNSMVLPEVEKLK 332
++ + D +N + ++LK
Sbjct: 58 EQKLTWKDLGLNEALCQACDELK 80
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 619 (223.0 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 142/403 (35%), Positives = 231/403 (57%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML-RHI 529
+ G++ +I++ + EK PIQ L M GRD IG A+TG+GKTLAF +P++ + I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKII 167
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
K G P+ L++APTREL +Q+ + R+ A + C+ YGG+ + QQ+ +L
Sbjct: 168 KYNAKHGRGRNPLCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRQLDY 225
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G ++ V TPGR+ID++ G + NL V ++V+DEAD+M +GF + I++ + R
Sbjct: 226 GVDVAVGTPGRVIDLM--KRGAL-NLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKR 282
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLVEVRPESDRFLRLLEL 707
Q+++FSAT P + L +K LN P+ + + G S + IT + R + L
Sbjct: 283 QSMMFSATMPSWIRSLTKKYLNNPLTVDLVGDSDQKLADGITTYSIIADSYGRASIIGPL 342
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
+ E + GK ++F ++ D L L + + C +LHG Q+ RE T++ F+ N+
Sbjct: 343 VTEHAKGGKCIVFTQTKRDADRLSYALAR-SFKCEALHGDISQSQRERTLAGFRDGHFNI 401
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
L+AT VAARGLDV ++L+I+++ PN+ E +VHR GRTGRAG+KG AI S++ ++
Sbjct: 402 LVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKKGSAILIYSQDQSR--- 458
Query: 828 DLVKALELSEQVVPDDLKALA-DSFMAKVNQGLEQAHGTGYGG 869
VK +E +L ++A + A + +G+ G +GG
Sbjct: 459 -AVKIIEREVGSRFTELPSIAVERGSASMFEGIGSRSGGSFGG 500
Score = 38 (18.4 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 282 SENQVGDAMLVDSDG 296
SE +VGD+ V DG
Sbjct: 89 SERRVGDSESVGGDG 103
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 603 (217.3 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 140/397 (35%), Positives = 230/397 (57%)
Query: 440 RMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALP 499
+ T +++ + +LK K V + + T+ + L+ +++ ++KL + +P PIQA+A+P
Sbjct: 166 KQTTDKIKVLQSNRKLK---KIVEEELPTFEELHLSRPLLKAVQKLGFSQPTPIQAKAIP 222
Query: 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHI--KDQPPVAAGDGPVGLIMAPTRELVQQIH 557
+ ++G+D + A TGSGKT AF+LP+L + +D A LI+ PTREL Q
Sbjct: 223 LALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRV----LILLPTRELALQCQ 278
Query: 558 SDIRKFAKVMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616
S + A+ + C+ V G S AQ++ EL++ ++V+ TPGR+ID L + G L
Sbjct: 279 SVMENLAQFSNITSCLIVGGLSNKAQEV-ELRKSPDVVIATPGRLIDHLLNAHG--IGLD 335
Query: 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676
+ L++DEADR+ DMGF+ +I +IV++ +RQT+LFSAT +V+ LA+ L +P+ +
Sbjct: 336 DLEILILDEADRLLDMGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRV 395
Query: 677 QVGGRSVVNKDITQ-LVEVRPE--SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733
QV V + Q V+++P+ SDR LL L + +G +IF S+++ L
Sbjct: 396 QVDALMQVTSTLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRII 455
Query: 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793
LHG Q R ++ F+ N L+A+ VA+RGLD+ ++ VIN++ PN
Sbjct: 456 FGLSDLKAAELHGNLSQEQRFDSLQQFRDGQVNYLLASDVASRGLDIIGVKTVINYNMPN 515
Query: 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830
+ +Y+HRVGRT RAG G + +FI++ D K D+V
Sbjct: 516 NMANYIHRVGRTARAGMDGKSCSFITDNDRKLLKDIV 552
Score = 54 (24.1 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 17/63 (26%), Positives = 29/63 (46%)
Query: 326 PEVEKLKNTVEPSFTDGN-NVESKKMDRKGDRRSNGEQPK----KSSNKSLGRIIPGEDS 380
P +EK+K TDG ++E K RK ++ + K K++N + + D+
Sbjct: 69 PTIEKMKQQTHKK-TDGQTSLEDKINQRKTVKKLKADDDKSVTTKTTNNNKSKKSNNNDN 127
Query: 381 DSD 383
D D
Sbjct: 128 DDD 130
Score = 45 (20.9 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 241 NVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPK 280
N + K+ N D +D DDEEV + + E + + +E K
Sbjct: 116 NNKSKKSNNN---DNDD-DDEEVNEEEEEEEEEEDNENEK 151
Score = 40 (19.1 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLV 292
+ E+ ++EE + E + ++ + S Q D + V
Sbjct: 136 EEEEEEEEEEDNENEKEINKKQQQQQQQSNKQTTDKIKV 174
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 151/428 (35%), Positives = 233/428 (54%)
Query: 454 ELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKT 513
E + G++ P P K++ + G+ ++ E + Y+ P PIQ+QA+P+ + GRD IG+A+T
Sbjct: 34 ETQTSGEE-PAPAKSFKELGIIDQLCEACENMGYKAPTPIQSQAIPLALEGRDVIGLAET 92
Query: 514 GSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573
GSGKT AF LPML+ + + P GL++APTREL QI +GVRC
Sbjct: 93 GSGKTAAFALPMLQALMEAPQTL-----FGLVLAPTRELAYQISQAFETLGSTIGVRCAV 147
Query: 574 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633
+ GG + Q L + I+V TPGR++D L + G +LR + YL +DEADR+ DM
Sbjct: 148 IVGGMDMVAQSIALGKKPHIIVATPGRLLDHLENTKG--FSLRNLKYLAIDEADRLLDMD 205
Query: 634 FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE 693
F + +I++ + R T LFSAT +VE L R L+ PV + V + +
Sbjct: 206 FGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQTVSTLQSSYI 265
Query: 694 VRPESDRFLRLLELLGEWYEKGKILIF--VHSQEKCDALFRDLLKHGYPCLSLHGAKDQT 751
P + L L+ LL E+ + I+ VH ++ + R L G+ + LHG Q+
Sbjct: 266 CIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRAL---GFGAIPLHGQLSQS 322
Query: 752 DRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK 811
R + F+S ++L+AT VAARGLD+ +++V NFD P + Y+HRVGRT RAG+
Sbjct: 323 ARLGALGKFRSRSRDILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKS 382
Query: 812 GCAITFISEEDAKYSPDLVKAL--ELSE-QVVPDDLKALADSFMAKVNQG-LE-QAHGTG 866
G AI+F+++ D + + AL +L E QV D++ +++ Q +E ++
Sbjct: 383 GVAISFVTQYDVEVWLRIEHALSKKLPEYQVEKDEVMVMSERVAEASRQATIEMKSFDEK 442
Query: 867 YGGSGFKF 874
G G KF
Sbjct: 443 KGARGKKF 450
>UNIPROTKB|Q0C354 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_759839.1 ProteinModelPortal:Q0C354 STRING:Q0C354
GeneID:4290097 KEGG:hne:HNE_1118 PATRIC:32215041 OMA:KHGSEKL
BioCyc:HNEP228405:GI69-1155-MONOMER Uniprot:Q0C354
Length = 464
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 147/402 (36%), Positives = 228/402 (56%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GLT +I+ ++ K Y P PIQ QA+P+++ GRD +G+A+TG+GKTLAF P+L +
Sbjct: 13 GLTGRILTSLTKAGYTAPTPIQEQAIPLVIQGRDIVGLAQTGTGKTLAFAAPILDRLSRN 72
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
A G L++APTREL QI + + + +R V V GG+ + QI +L+RG
Sbjct: 73 ASPAPVRGTRVLVLAPTRELAGQIATSFGTYGAGLNLRVVMVCGGAKIGGQIRQLERGAH 132
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
I+V TPGR+ID++ + +L +V L++DEAD+M D+GF + I +N+ RQT+
Sbjct: 133 ILVATPGRLIDLM---EQRAVSLDKVETLILDEADQMLDLGFIHALRAIAKNVPSKRQTL 189
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY 712
FSAT P+ VE LA L P E+ V + I Q V + ++ L+E + +
Sbjct: 190 FFSATMPKAVESLAATFLRNPAEVSVAPPATTAGRIEQRVCFVEQPEKASLLIEKIRD-P 248
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
E ++F ++ D + + L K +++HG K Q+ RE + FK+ +L+AT
Sbjct: 249 ELRSAIVFTRTKHGADGVVKRLAKADIDSVAIHGNKSQSQREKALEAFKAGRVPILVATD 308
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832
+AARG+ V L VIN+D P+ E +VHR+GRT RAG G AI+F S ++ P L +A
Sbjct: 309 IAARGIHVDALTHVINYDLPDVPEQFVHRIGRTARAGNSGVAISFCSRDER---PTL-RA 364
Query: 833 LE--LSEQVVPDDLKALADSFMAKVN--QGLEQAHGTGYGGS 870
+E ++ P+ + +L D + K QG +G G GG+
Sbjct: 365 IEKLTGLKLAPNGV-SLPDEPLRKPGKPQGNRSGNGGGRGGA 405
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 139/393 (35%), Positives = 226/393 (57%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
++ + + GL + +++ + L +E P PIQ +A+P+I+ G + +G A TG+GKT A++LP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
L+ I+ G LI+ PTREL Q+ ++ K K + VR + VYGG + +QI
Sbjct: 61 LQRIQ------RGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIR 114
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
L++G E++V TPGR++D + G K + +++DEAD M DMGF I I+ +
Sbjct: 115 GLRQGVEVIVGTPGRILDHI---GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705
+QT+LFSAT P ++ + +K L +++ GR I Q+ PE+++ L+
Sbjct: 172 TNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLV 231
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
+L + ++F ++++ D + L GY LHG Q +R TI FK+
Sbjct: 232 SILNSELPI-QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKT 290
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
LL+AT VAARGLD+ ++ VINFD P + E Y+HR+GRTGRAGR+G AIT I+ + K
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 826 SPDLVKALE--LSEQVVPD--DLKALADSFMAK 854
+ +A+ L +++P+ DL+ +AK
Sbjct: 351 LKAIEEAINKRLKREILPEPVDLEEARFKKIAK 383
>UNIPROTKB|Q8EE19 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 131/352 (37%), Positives = 206/352 (58%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
Q GL S +++ + +L Y+ P PIQ QA+P I++G++ + A+TG+GKT +FVLP+L
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFA 64
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
D P + +I+ PTREL Q+ +I ++AK + + + +YGG A Q L G
Sbjct: 65 DAPKIRP-KRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEG 123
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
+++V TPGR++D+ + V+ LV+DEADRM DMGF I I++ + RQ
Sbjct: 124 VDLLVATPGRLLDMYTQ---RAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710
+LFSAT +QV+ LA+ + +EI++ ++ + I Q + + DR LL L +
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTT-VDKDRKSALLSHLIK 239
Query: 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
+ LIF+ ++ L L K G + H + Q RE + DFK+ L+A
Sbjct: 240 ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299
Query: 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
T V +RG+D+ LE VIN+D P+ +DY+HR+GRTGRAG +G AI+F+S++D
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDD 351
>TIGR_CMR|CHY_0229 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 139/393 (35%), Positives = 226/393 (57%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
++ + + GL + +++ + L +E P PIQ +A+P+I+ G + +G A TG+GKT A++LP+
Sbjct: 1 MEEFKKLGLITPLLKAVNDLGFEMPTPIQKEAIPLILEGHNLVGQAPTGTGKTAAYLLPV 60
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
L+ I+ G LI+ PTREL Q+ ++ K K + VR + VYGG + +QI
Sbjct: 61 LQRIQ------RGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIR 114
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
L++G E++V TPGR++D + G K + +++DEAD M DMGF I I+ +
Sbjct: 115 GLRQGVEVIVGTPGRILDHI---GRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTL 171
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705
+QT+LFSAT P ++ + +K L +++ GR I Q+ PE+++ L+
Sbjct: 172 TNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETEKIEGLV 231
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
+L + ++F ++++ D + L GY LHG Q +R TI FK+
Sbjct: 232 SILNSELPI-QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKAGKT 290
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
LL+AT VAARGLD+ ++ VINFD P + E Y+HR+GRTGRAGR+G AIT I+ + K
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 826 SPDLVKALE--LSEQVVPD--DLKALADSFMAK 854
+ +A+ L +++P+ DL+ +AK
Sbjct: 351 LKAIEEAINKRLKREILPEPVDLEEARFKKIAK 383
>TIGR_CMR|SO_2571 [details] [associations]
symbol:SO_2571 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:NP_718157.1 ProteinModelPortal:Q8EE19
GeneID:1170275 KEGG:son:SO_2571 PATRIC:23524769
ProtClustDB:CLSK906777 Uniprot:Q8EE19
Length = 475
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 131/352 (37%), Positives = 206/352 (58%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
Q GL S +++ + +L Y+ P PIQ QA+P I++G++ + A+TG+GKT +FVLP+L
Sbjct: 5 QLGLHSALVKAVTELGYQSPTPIQTQAIPSILAGKNVLAAAQTGTGKTASFVLPLLHRFA 64
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
D P + +I+ PTREL Q+ +I ++AK + + + +YGG A Q L G
Sbjct: 65 DAPKIRP-KRVRSIILTPTRELALQVEQNINQYAKYLPLTAMAMYGGVDAAPQKKRLIEG 123
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
+++V TPGR++D+ + V+ LV+DEADRM DMGF I I++ + RQ
Sbjct: 124 VDLLVATPGRLLDMYTQ---RAIRFDEVSVLVLDEADRMLDMGFIEDINNIIEKLPEQRQ 180
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE 710
+LFSAT +QV+ LA+ + +EI++ ++ + I Q + + DR LL L +
Sbjct: 181 NLLFSATLSKQVKALAKTAIPDAIEIEISRKNAASTQIDQWLTT-VDKDRKSALLSHLIK 239
Query: 711 WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770
+ LIF+ ++ L L K G + H + Q RE + DFK+ L+A
Sbjct: 240 ENNWAQALIFIQTKHGAAKLVSQLEKRGIVAEAFHSGRSQAIREQLLIDFKAGKVPFLVA 299
Query: 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
T V +RG+D+ LE VIN+D P+ +DY+HR+GRTGRAG +G AI+F+S++D
Sbjct: 300 TGVVSRGIDIDALERVINYDLPDEADDYIHRIGRTGRAGNQGEAISFVSKDD 351
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 617 (222.3 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 138/361 (38%), Positives = 208/361 (57%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
KT+ G+T + E +L + KP IQ +A+P+ + GRD IG+A+TGSGKT AF LP+L
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + P L++ PTREL QI +GV+C + GG Q
Sbjct: 84 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L + IV+ TPGR+ID L + G NLR + YLVMDEADR+ +M FE ++ +I++ I
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVIP 196
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706
DR+T LFSAT ++V+ L R L PV+ V + + + Q P + L+
Sbjct: 197 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 707 LLGEWYEKGKILIFV---HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
+L E +IF ++ ++ L R+L G+ + LHG Q+ R +++ FK+
Sbjct: 257 ILNE-LAGNSFMIFCSTCNNTQRTALLLRNL---GFTAIPLHGQMSQSKRLGSLNKFKAK 312
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
++L+AT VA+RGLD+ +++V+NFD P H +DY+HRVGRT RAGR G AITF+++ D
Sbjct: 313 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV 372
Query: 824 K 824
+
Sbjct: 373 E 373
Score = 38 (18.4 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 290 MLVDSDGGSAAPALQIGAAEDE 311
M D + S + ALQ A E+E
Sbjct: 1 MAADEEPDSPSGALQTAAEEEE 22
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 617 (222.3 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 138/361 (38%), Positives = 208/361 (57%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
KT+ G+T + E +L + KP IQ +A+P+ + GRD IG+A+TGSGKT AF LP+L
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWAKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + P L++ PTREL QI +GV+C + GG Q
Sbjct: 84 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 138
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L + IV+ TPGR+ID L + G NLR + YLVMDEADR+ +M FE ++ +I++ I
Sbjct: 139 LAKKPHIVIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVIP 196
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706
DR+T LFSAT ++V+ L R L PV+ V + + + Q P + L+
Sbjct: 197 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 256
Query: 707 LLGEWYEKGKILIFV---HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
+L E +IF ++ ++ L R+L G+ + LHG Q+ R +++ FK+
Sbjct: 257 ILNE-LAGNSFMIFCSTCNNTQRTALLLRNL---GFTAIPLHGQMSQSKRLGSLNKFKAK 312
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
++L+AT VA+RGLD+ +++V+NFD P H +DY+HRVGRT RAGR G AITF+++ D
Sbjct: 313 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV 372
Query: 824 K 824
+
Sbjct: 373 E 373
Score = 38 (18.4 bits), Expect = 2.3e-62, Sum P(2) = 2.3e-62
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 290 MLVDSDGGSAAPALQIGAAEDE 311
M D + S ALQ A E+E
Sbjct: 1 MAADEEPDSPTEALQTAAEEEE 22
>UNIPROTKB|Q4K4H4 [details] [associations]
symbol:rhlE_2 "Putative ATP-dependent RNA helicase"
species:220664 "Pseudomonas protegens Pf-5" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006139 GO:GO:0003676
EMBL:CP000076 GenomeReviews:CP000076_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:DGDLMGF ProtClustDB:CLSK865855 RefSeq:YP_262859.1
ProteinModelPortal:Q4K4H4 GeneID:3480173 KEGG:pfl:PFL_5801
PATRIC:19881109 BioCyc:PFLU220664:GIX8-5841-MONOMER Uniprot:Q4K4H4
Length = 622
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 139/381 (36%), Positives = 222/381 (58%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI--K 530
GL+ ++ I Y +P P+Q +A+P ++ GRD + A+TG+GKT F LP+L +
Sbjct: 7 GLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPN 66
Query: 531 DQPPVAAGDGPVG---LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
P + GP L++ PTREL Q+H + +A+ + ++GG G+ Q+ +
Sbjct: 67 GHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMNPQVQAM 126
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
RG +++V PGR++D+ +G +L V LV+DEADRM DMGF + +++ +
Sbjct: 127 ARGVDVLVACPGRLLDL---AGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPA 183
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707
RQ +LFSATF + + LA K+L+ P I+V + + I Q V P S + L L
Sbjct: 184 KRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLPASHKRALLAHL 243
Query: 708 L--GEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
+ G W + +L+F ++ + L L KHG +++HG K Q R ++DFK+
Sbjct: 244 ITAGAWEQ---VLVFTRTKHGANRLAEYLDKHGLSAVAIHGNKSQNARTKALADFKAGEV 300
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
+L+AT +AARGLD+ +L V+NF+ PN EDYVHR+GRTGRAGR G AI+ ++ ++ K
Sbjct: 301 RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK- 359
Query: 826 SPDLVKALE-LSEQVVPD-DL 844
L+K++E +++Q + D DL
Sbjct: 360 ---LLKSIERMTKQKIADGDL 377
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 144/396 (36%), Positives = 231/396 (58%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ L S +++ I + Y++P IQ Q++P+I++ D + A+TG+GKT AF LP+L+
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ P L++ PTREL QQ+H + + V YGG +QISEL
Sbjct: 66 QLISVQPCKPELR--ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
K G +I++ TPGR++D+L T ++N+ LV DEADRM DMGF+ +I +I Q +
Sbjct: 124 KVGVDILIATPGRLLDLLRTESVSLSNIET---LVFDEADRMLDMGFKEEIDQITQYLPK 180
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE- 706
+QT+LFSATF + +++ +L +P +++ ++ D+ QLV ++DR L
Sbjct: 181 TKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLV-YGVDADRKRELTSF 239
Query: 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
L+G K ++L+F +++ D L +++ K G L++HG K Q RE + +FK
Sbjct: 240 LIGSRNWK-QVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVR 298
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS--EEDAK 824
LIAT VAARG+D+K L VIN++ P + EDYVHR+GRT RAG G A++ +S EE
Sbjct: 299 ALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLL 358
Query: 825 YSPDLVKALELSEQVVPD---DLKALADSFMAKVNQ 857
+ + + ++L +Q +P DL +A+S +N+
Sbjct: 359 TAIEELLDIQLLQQWLPGYELDLTKIANSNKRPINK 394
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 636 (228.9 bits), Expect = 3.0e-62, P = 3.0e-62
Identities = 144/396 (36%), Positives = 231/396 (58%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ L S +++ I + Y++P IQ Q++P+I++ D + A+TG+GKT AF LP+L+
Sbjct: 6 TFSSFSLDSTLLKAITESAYDEPTEIQKQSIPLILAKHDVMARAQTGTGKTAAFALPILQ 65
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ P L++ PTREL QQ+H + + V YGG +QISEL
Sbjct: 66 QLISVQPCKPELR--ALVLTPTRELAQQVHKSFCHYGQFTDVTIGIAYGGVSTKKQISEL 123
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
K G +I++ TPGR++D+L T ++N+ LV DEADRM DMGF+ +I +I Q +
Sbjct: 124 KVGVDILIATPGRLLDLLRTESVSLSNIET---LVFDEADRMLDMGFKEEIDQITQYLPK 180
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE- 706
+QT+LFSATF + +++ +L +P +++ ++ D+ QLV ++DR L
Sbjct: 181 TKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAADDVEQLV-YGVDADRKRELTSF 239
Query: 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
L+G K ++L+F +++ D L +++ K G L++HG K Q RE + +FK
Sbjct: 240 LIGSRNWK-QVLVFTRTKQCADDLAKEMTKDGVKSLAIHGDKSQGAREKALHEFKEGKVR 298
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS--EEDAK 824
LIAT VAARG+D+K L VIN++ P + EDYVHR+GRT RAG G A++ +S EE
Sbjct: 299 ALIATDVAARGIDIKGLSHVINYELPYNAEDYVHRIGRTARAGNSGLAVSLVSPGEEWLL 358
Query: 825 YSPDLVKALELSEQVVPD---DLKALADSFMAKVNQ 857
+ + + ++L +Q +P DL +A+S +N+
Sbjct: 359 TAIEELLDIQLLQQWLPGYELDLTKIANSNKRPINK 394
>UNIPROTKB|E1BXX5 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:AADN02033796 IPI:IPI00587299
RefSeq:XP_422189.2 ProteinModelPortal:E1BXX5
Ensembl:ENSGALT00000003389 GeneID:424346 KEGG:gga:424346
NextBio:20826688 Uniprot:E1BXX5
Length = 625
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 175/598 (29%), Positives = 296/598 (49%)
Query: 263 VPQTGKSETDMDADEEPKPSENQV--GDAMLVDS----DGGSAAPALQIGAAEDEDI--- 313
+P++ K + D D+ N++ G + L +S DG SA A + ++
Sbjct: 3 LPRSVKVKRSADEDKSCTAKRNRLSSGGSSLEESTEFQDGKSAGTATSTSKCDSNEVVQH 62
Query: 314 -DPLDAFMNSMVLPEV---EKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNK 369
+P+ A + + +P+ E NT E D ++ E K K R + +P
Sbjct: 63 TEPVTA-PSDLGVPDASSGEDKGNTAE----DSSSEEPVKSFSKSQRWAEPGEPVCVVCG 117
Query: 370 SLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRK 429
G I + +D D ++ +K K+ L+ + + +
Sbjct: 118 RYGEYIC-DKTDEDV-----CSLECKAKHLLQMQEKEEKLKSAHLAKGESQEESHLLNTA 171
Query: 430 NFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489
FY + I + E+V + QL + I G+ VP+PI + G + ++ YE
Sbjct: 172 YFYKDHSFILSLQDEQVENLKLQLGIAIQGQQVPRPIIEFEHCGFPETLNSNLKNSGYEV 231
Query: 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549
P PIQ Q +PV + GRD + A TGSGKT AF+LP++ + ++ + P LI+APT
Sbjct: 232 PTPIQMQMIPVGLLGRDIVASADTGSGKTAAFLLPVIMKVLNET-----ETPSALILAPT 286
Query: 550 RELVQQIHSDIRKF-AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608
REL QI ++ A + +R V + GG + Q+ LK+ ++++ TPGR+++IL S
Sbjct: 287 RELAIQIERQAKELMAGLPNMRTVLLVGGLPLPPQLHRLKQSVKVIIATPGRLLEILRQS 346
Query: 609 GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668
L + +V+DE D M MGF+ Q+ I+++I D QT+L SAT P +E LA +
Sbjct: 347 S---VQLHGIKIVVVDEVDTMLKMGFQQQVLDILEDISHDHQTILVSATIPVGIEHLANQ 403
Query: 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW-YEKGKILIFVHSQEKC 727
+L+ V I +G +++ ++ Q++ E + +L E+L + K +L+FV +
Sbjct: 404 LLHNFVRITIGEKNLPCSNVRQIILWVEEPSKKKKLFEILNDKKLFKPPVLVFVDCKLGA 463
Query: 728 DALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786
D L + K G C S+H K Q +R + + ++++T V RGLD+ ++LV
Sbjct: 464 DLLSDAVHKITGLQCTSMHSEKSQVERTAILQGLLQEKYEVIVSTGVLGRGLDLVNVKLV 523
Query: 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
+NFD P+ ++YVH+VGR GR G G AITFI+ K D+VK ++ + ++P L
Sbjct: 524 VNFDMPSSMDEYVHQVGRAGRLGHSGTAITFINNNSKKLFWDVVKRVKPTGTILPPQL 581
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 146/399 (36%), Positives = 225/399 (56%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
+T+ + GL+ ++ + +L YEKP PIQ+ ++ +M+G+D +G A+TG+GKT AF LP+L
Sbjct: 6 RTFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLL 65
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQIS 585
+ Q P L++APTREL Q+ +AK M +P+YGG + QQ++
Sbjct: 66 NKVTSQTT------PQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLN 119
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
LKRG +++V TPGR++D + K+ L+ LV+DEAD M MGF I I+++
Sbjct: 120 ALKRGPQVIVGTPGRVMDHMRRGTLKLETLQA---LVLDEADEMLKMGFIDDIEWILEHT 176
Query: 646 RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRL 704
P RQ LFSAT P Q++ +A K L I + I Q V+V + ++ L
Sbjct: 177 PPQRQLALFSATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVS-QHNKLEAL 235
Query: 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764
+ +L +G I+IFV ++ C L L GY LHG +Q RE + K+
Sbjct: 236 VRVLEVENTEG-IIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGK 294
Query: 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824
++LIAT VAARGLDV+ + V+N+D P E YVHR+GRTGRAGR G AI F++ + +
Sbjct: 295 LDILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMR 354
Query: 825 YSPDLVKALE--LSEQVVPDDLKALADSFMAKVNQGLEQ 861
+ +A +S VP + +A+ ++++ + L Q
Sbjct: 355 MLRTIERATNSRISPMKVPSP-ETVAERRLSRLGEQLAQ 392
>WB|WBGene00001598 [details] [associations]
symbol:glh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0009791
"post-embryonic development" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0016070 "RNA metabolic process"
evidence=ISS] [GO:0043186 "P granule" evidence=IDA] [GO:0003724
"RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0008432 "JUN kinase binding" evidence=IPI]
[GO:0043621 "protein self-association" evidence=IPI] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR001878 InterPro:IPR011545
Pfam:PF00098 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343 SMART:SM00490
GO:GO:0005524 GO:GO:0006915 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0009791 GO:GO:0007281 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772 EMBL:FO080897
PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 170/430 (39%), Positives = 236/430 (54%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
KP KT+ + LT + + + Y K PIQ ALP++ G D + A+TGSGKT AF+L
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 524 P-MLRHIKDQPPVAAGDG---PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579
P M R I D AG+G P +I+ PTREL QI+++ RKFA + PVYGG
Sbjct: 398 PIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLA 457
Query: 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQI 638
V ++++G I+V T GR I C G L + + V+DEADRM D MGF I
Sbjct: 458 VGYNKGQIEKGATIIVGTVGR-IKHFCEEG--TIKLDKCRFFVLDEADRMIDAMGFGTDI 514
Query: 639 TRIVQ-NIRP---DRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVE 693
IV + P +RQT++FSATFP V+ AR L + V I + NK + Q E
Sbjct: 515 ETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFE 574
Query: 694 VRPESDRFLRLLELLG---EWY--EKG------KILIFVHSQEKCDALFRDLLKHGYPCL 742
S++ +LLELLG + Y EK K ++FV + D L L P +
Sbjct: 575 RCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAI 634
Query: 743 SLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRV 802
++HGA++Q +R + F++ +LIAT+VA RGLD+K ++ VIN+D P++ +DY+HR+
Sbjct: 635 TIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRI 694
Query: 803 GRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQA 862
GRTGR G G A +FISE D +LV L ++Q+VPD +M QG A
Sbjct: 695 GRTGRVGNSGRATSFISE-DCSLLSELVGVLADAQQIVPD--------WM----QG---A 738
Query: 863 HGTGYGGSGF 872
G YG SGF
Sbjct: 739 AGGNYGASGF 748
>UNIPROTKB|P34689 [details] [associations]
symbol:glh-1 "ATP-dependent RNA helicase glh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0046872 GO:GO:0008270 GO:GO:0003723 GO:GO:0009791
GO:GO:0007281 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043186 GeneTree:ENSGT00620000087942 EMBL:L19948 EMBL:U62772
EMBL:FO080897 PIR:A48686 PIR:C87818 PIR:T15132 RefSeq:NP_491963.1
ProteinModelPortal:P34689 SMR:P34689 IntAct:P34689 STRING:P34689
PaxDb:P34689 EnsemblMetazoa:T21G5.3 GeneID:172414
KEGG:cel:CELE_T21G5.3 UCSC:T21G5.3 CTD:172414 WormBase:T21G5.3
InParanoid:P34689 OMA:HRSNECT NextBio:875417 Uniprot:P34689
Length = 763
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 170/430 (39%), Positives = 236/430 (54%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
KP KT+ + LT + + + Y K PIQ ALP++ G D + A+TGSGKT AF+L
Sbjct: 338 KPCKTFAEANLTETMQKNVAHAGYSKTTPIQQYALPLVHQGYDIMACAQTGSGKTAAFLL 397
Query: 524 P-MLRHIKDQPPVAAGDG---PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579
P M R I D AG+G P +I+ PTREL QI+++ RKFA + PVYGG
Sbjct: 398 PIMTRLIDDNNLNTAGEGGCYPRCIILTPTRELADQIYNEGRKFAYQTMMEIKPVYGGLA 457
Query: 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQI 638
V ++++G I+V T GR I C G L + + V+DEADRM D MGF I
Sbjct: 458 VGYNKGQIEKGATIIVGTVGR-IKHFCEEG--TIKLDKCRFFVLDEADRMIDAMGFGTDI 514
Query: 639 TRIVQ-NIRP---DRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVE 693
IV + P +RQT++FSATFP V+ AR L + V I + NK + Q E
Sbjct: 515 ETIVNYDSMPRKENRQTLMFSATFPDSVQEAARAFLRENYVMIAIDKIGAANKCVLQEFE 574
Query: 694 VRPESDRFLRLLELLG---EWY--EKG------KILIFVHSQEKCDALFRDLLKHGYPCL 742
S++ +LLELLG + Y EK K ++FV + D L L P +
Sbjct: 575 RCERSEKKDKLLELLGIDIDSYTTEKSAEVYTKKTMVFVSQRAMADTLASILSSAQVPAI 634
Query: 743 SLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRV 802
++HGA++Q +R + F++ +LIAT+VA RGLD+K ++ VIN+D P++ +DY+HR+
Sbjct: 635 TIHGAREQRERSEALRQFRNGSKPVLIATAVAERGLDIKGVDHVINYDMPDNIDDYIHRI 694
Query: 803 GRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQA 862
GRTGR G G A +FISE D +LV L ++Q+VPD +M QG A
Sbjct: 695 GRTGRVGNSGRATSFISE-DCSLLSELVGVLADAQQIVPD--------WM----QG---A 738
Query: 863 HGTGYGGSGF 872
G YG SGF
Sbjct: 739 AGGNYGASGF 748
>UNIPROTKB|E2R4Y9 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00610000086076 OMA:VTRPIID EMBL:AAEX03005031
Ensembl:ENSCAFT00000017696 Uniprot:E2R4Y9
Length = 623
Score = 611 (220.1 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 156/508 (30%), Positives = 261/508 (51%)
Query: 349 KMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSD---SDYGXXXXXXXXXXXXXXXXFMKR 405
+ D KG S E+P KS +K+ PGE YG K
Sbjct: 79 EQDSKGSDLS--EEPVKSFSKTQRWAEPGEPVCVVCGRYGEYICDKTDEDVCSLECKAKH 136
Query: 406 VK--KTKAEKLSIVDHSKIDYQPFRK-NFYIEVKE---IARMTPEEVSAYRKQLELKIHG 459
+ K K E+L + K + +P N KE I + +++ ++QL + + G
Sbjct: 137 LLQVKEKEERLKLSAPHKANSEPESPLNTLYVYKEHPFILNLQEDQIENLKRQLGIVVQG 196
Query: 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTL 519
+DV +PI + G + ++ YE P PIQ Q +PV + GRD + A TGSGKT
Sbjct: 197 QDVTRPIIDFEHCGFPEALNHNLKTSGYEVPTPIQMQMIPVGLLGRDVLASADTGSGKTA 256
Query: 520 AFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGS 578
AF+LP++ + P LI+ PTREL QI + ++ + ++ V + GG
Sbjct: 257 AFLLPVITRA-----LCESKTPSALILTPTRELAIQIENQAKELMSGLPRMKTVLLVGGL 311
Query: 579 GVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQI 638
+ Q+ L++ ++++ TPGR++DI+ S ++ ++ V V+DEAD M MGF+ Q+
Sbjct: 312 PLPPQLYRLRQHVKVIIATPGRLLDIIKQSSVELCGIKIV---VVDEADTMLKMGFQQQV 368
Query: 639 TRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES 698
I++++ D QT+L SAT P +E LA ++L+ PV I G +++ + Q++ E
Sbjct: 369 LDILEHVPNDSQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCSSVRQIILWVEEP 428
Query: 699 DRFLRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDREST 756
+ +L E+L + K +L+FV + D L + K G +S+H K QT+R++
Sbjct: 429 AKKKKLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSVSIHSEKSQTERKNI 488
Query: 757 ISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT 816
+ ++++T V RGLD+ + LV+NFD P+ ++YVH+VGR GR G+ G AIT
Sbjct: 489 LKGLLEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQVGRVGRLGQNGTAIT 548
Query: 817 FISEEDAKYSPDLVKALELSEQVVPDDL 844
FI+ + D+ K ++ + ++P L
Sbjct: 549 FINNNSKRLFWDIAKRVKPTGSILPPQL 576
Score = 37 (18.1 bits), Expect = 1.3e-61, Sum P(2) = 1.3e-61
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 240 ANVEEPKAGRNWTLD--REDSDDEEVPQTGKSETDMDADEEPKPS 282
A +P+A + LD R+D D VP ++ A+ P PS
Sbjct: 22 AKKTKPEA-EDLQLDEGRDDPADALVPGAARTADRCSAEPCPFPS 65
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 134/372 (36%), Positives = 220/372 (59%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL++ I++ I + Y P PIQ QA+P +++G+D + A+TG+GKT F LP+L +
Sbjct: 7 GLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKG 66
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
P V A LI+ PTREL QI ++ + + + ++ V+GG + Q+ + +G +
Sbjct: 67 PKVRANQVRA-LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
I+V TPGR++D+ + K L LV+DEADRM DMGF I +I++ + RQ +
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLE---ILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV---EVRPESDRFLRLLELLG 709
LFSATF ++ LA+ ++N PVEI V + + + Q + +V+ + D ++L++ G
Sbjct: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE-G 241
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
W + +L+F+ ++ + L L + G ++HG K Q R ++DFK+ +L+
Sbjct: 242 NWQQ---VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
AT +AARG+D+ +L V+NF+ P EDYVHR+GRTGRAG G AI+ +S +A P+L
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA---PEL 355
Query: 830 VKALELSEQVVP 841
L++ ++P
Sbjct: 356 FAIERLTQALLP 367
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 142/408 (34%), Positives = 224/408 (54%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL+ +++ +R YE P PIQAQA+P ++SGRD + A+TG+GKT F LP+L+ +
Sbjct: 12 GLSEALLKAVRDKGYETPSPIQAQAIPAVISGRDVMAAAQTGTGKTAGFTLPLLQRLSSS 71
Query: 533 PPVAAGDGPV-GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
V LI+ PTREL QI I + K + + + V+GG + QI+ L++G
Sbjct: 72 KGNKVSSNNVRALILTPTRELAAQISESIEVYGKYLNLHSMVVFGGVKINPQIARLRQGV 131
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
+++V TPGR++D+ K + L ++DEADRM DMGF I +++ + DRQ
Sbjct: 132 DVLVATPGRLLDLYNQRAVKFSQLE---VFILDEADRMLDMGFIRDIKKLMTALPKDRQN 188
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGE- 710
+LFSATF ++ LA+ ++N P+EI V + + +TQ + + + L L+ E
Sbjct: 189 LLFSATFSPEIRALAKGMVNNPLEISVDAENSTAEKVTQWLTAVDKKRKPAVLTHLIKEN 248
Query: 711 -WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
W + +L+F ++ + L + L G ++HG K Q R ++ FK +L+
Sbjct: 249 NWQQ---VLVFTKTKHGANKLTKHLEAEGLTAAAIHGNKSQGARTKALAAFKDGSVKILV 305
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI--SEEDAKYSP 827
AT +AARG+D+ L V+NFD PN EDYVHR+GRT RAG G A++ + E D +
Sbjct: 306 ATDIAARGIDIDLLPQVVNFDLPNVPEDYVHRIGRTARAGNTGQALSLVCADELDLLWGI 365
Query: 828 DLVKALELSEQVVPDDLKA--LADSFMAK-VNQGLE----QAHGTGYG 868
+ V + +V+ + A L +S + K + QG + HG G G
Sbjct: 366 EHVIQQHIERKVIEKFIPANELGESRVIKPLKQGKPPKSAKPHGAGKG 413
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
Identities = 134/372 (36%), Positives = 220/372 (59%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL++ I++ I + Y P PIQ QA+P +++G+D + A+TG+GKT F LP+L +
Sbjct: 7 GLSAPILKAIEEKGYNTPSPIQLQAIPAVLAGKDVMAAAQTGTGKTAGFTLPILELLAKG 66
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
P V A LI+ PTREL QI ++ + + + ++ V+GG + Q+ + +G +
Sbjct: 67 PKVRANQVRA-LILTPTRELAAQIQDNVMLYGRHLPLKSAVVFGGVKINPQMQRMCKGAD 125
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
I+V TPGR++D+ + K L LV+DEADRM DMGF I +I++ + RQ +
Sbjct: 126 ILVATPGRLMDLYNQNAVKFDQLE---ILVLDEADRMLDMGFIRDIHKILKLLPEKRQNL 182
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV---EVRPESDRFLRLLELLG 709
LFSATF ++ LA+ ++N PVEI V + + + Q + +V+ + D ++L++ G
Sbjct: 183 LFSATFSTEIRELAKGLVNNPVEISVSPANSTARTVEQCIYPADVKKKPDMLVKLVKE-G 241
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
W + +L+F+ ++ + L L + G ++HG K Q R ++DFK+ +L+
Sbjct: 242 NWQQ---VLVFMRTKHGANRLATYLNEQGLTAAAIHGNKSQGARTRALADFKAGEVRILV 298
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
AT +AARG+D+ +L V+NF+ P EDYVHR+GRTGRAG G AI+ +S +A P+L
Sbjct: 299 ATDIAARGIDIPQLPQVVNFELPKIAEDYVHRIGRTGRAGEVGKAISLVSAIEA---PEL 355
Query: 830 VKALELSEQVVP 841
L++ ++P
Sbjct: 356 FAIERLTQALLP 367
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 136/370 (36%), Positives = 216/370 (58%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI-KDQ 532
L I++ + Y++P PIQ + +P +++G D +G+A+TG+GKT AF LP++ +++
Sbjct: 9 LLESIIDRVNLKGYKQPTPIQKECIPALINGNDLLGIAQTGTGKTAAFSLPIINKFGRNK 68
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
+ A LI+ PTREL QI +I ++ +G++ VYGG G Q+ ++ G +
Sbjct: 69 IDIKA-KSTRSLILTPTRELASQIMQNIDDYSDGLGLKTKVVYGGVGRQAQVDSIELGLD 127
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
I+V TPGR++D++ T G I N + + V+DEAD M DMGF + I+ + RQT+
Sbjct: 128 ILVATPGRLLDLIET--GDI-NFKALEVFVLDEADTMLDMGFFKDVQSIISKLPKSRQTL 184
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW- 711
LFSAT P ++EILA +L P +IQ+ +V + Q V +S++ L +L +
Sbjct: 185 LFSATMPAEIEILAEAILTDPTKIQITAETVTIDLVNQSVYHLDKSNKVPLLFNILTKAD 244
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
YEK +LIF ++ D + + L K SLH K Q RE + +FK + +L+AT
Sbjct: 245 YEK--VLIFCKTKYGADIIVKALEKASITAASLHSGKTQAVREEALQNFKDSTLRVLVAT 302
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831
VAARG+DV + LVIN++ P +Y+HR+GRT RAG+ G AI+F E D + ++
Sbjct: 303 DVAARGIDVDNITLVINYNLPEDPRNYIHRIGRTARAGKSGMAISFAVENDIRQLTNIEN 362
Query: 832 ALELSEQVVP 841
++ QV+P
Sbjct: 363 SIG---QVIP 369
>UNIPROTKB|A4QYM6 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
EMBL:CM001233 GO:GO:0042254 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K13181 RefSeq:XP_003712922.1
ProteinModelPortal:A4QYM6 STRING:A4QYM6 GeneID:2683645
KEGG:mgr:MGG_07718 OrthoDB:EOG4B01XM Uniprot:A4QYM6
Length = 790
Score = 592 (213.5 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 153/422 (36%), Positives = 226/422 (53%)
Query: 444 EEVSAYRKQLELKIHGK-DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM 502
EE +A K+ K D K ++ L+ I+ + + + KP PIQ++ +P+ +
Sbjct: 231 EEEAAKMKEFFAADEPKSDTNKGNASFQSMSLSRPILRGLTSVGFAKPTPIQSKTIPIAL 290
Query: 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562
G+D +G A TGSGKT AFV+P+L + +P V I+APTREL Q H+ K
Sbjct: 291 MGKDVVGGAVTGSGKTAAFVVPILERLLYRPKKVPTSRVV--ILAPTRELAIQCHAVATK 348
Query: 563 FAKVMGVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621
A ++ C+ V GG + Q SEL+ ++++ TPGR ID + S + V L
Sbjct: 349 LASHTDIKFCLAV-GGLSLKVQESELRLRPDVIIATPGRFIDHMRNSASFAVDT--VEIL 405
Query: 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681
V+DEADRM + GF ++ I+ + RQT+LFSAT V+ L R LNKPV + V +
Sbjct: 406 VLDEADRMLEDGFADELNEILTTLPKSRQTMLFSATMTSSVDNLIRVGLNKPVRLMVDSQ 465
Query: 682 SVVNKDITQ-LVEVRP--ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH- 737
+TQ V +RP E R L+ L Y + +++IF Q+K R +
Sbjct: 466 KKTVVTLTQEFVRLRPGREEKRMGYLVYLCKNLYTE-RVIIFFR-QKKIAHHARIIFGLL 523
Query: 738 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYED 797
G C LHG+ Q R ++ F+ + L+AT +A+RGLD+K ++ VIN++AP E
Sbjct: 524 GLSCAELHGSMSQIQRIQSVEAFRDGKVSFLLATDLASRGLDIKGVDTVINYEAPQSLEI 583
Query: 798 YVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL--KALADSFMAKV 855
YVHRVGRT RAGR G AIT +E D K VKA + + + A ADS+ AK+
Sbjct: 584 YVHRVGRTARAGRSGTAITLAAEPDRKVVKAAVKAGKAQGAKISSRIIDAADADSWQAKI 643
Query: 856 NQ 857
++
Sbjct: 644 DE 645
Score = 53 (23.7 bits), Expect = 2.6e-61, Sum P(2) = 2.6e-61
Identities = 23/71 (32%), Positives = 31/71 (43%)
Query: 240 ANVEEPKAGRNWTLDRE-DSDDEEV--P-------QTGKSETDMDADEEPKPSENQVGDA 289
A E + G + E DSDDE V P Q +SE D D +E K E D
Sbjct: 186 AEASEGQDGSEASEGEEGDSDDESVASPVPHPDDDQESESEQDEDEEEAAKMKEFFAADE 245
Query: 290 MLVDSDGGSAA 300
D++ G+A+
Sbjct: 246 PKSDTNKGNAS 256
Score = 49 (22.3 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 268 KSETDMDADEEPKPSENQVGDAMLVDSDGGS--AAPALQIGA-AEDED 312
K E EP+ + G+A+ +D D A A +GA ++DED
Sbjct: 137 KKEGGTKGAAEPEAKAEEEGEALGLDDDDDEVLARDAFGMGAGSDDED 184
Score = 45 (20.9 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 239 DANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDA 289
D +V P + + E DE+ + K + ADE PK N+ G+A
Sbjct: 207 DESVASPVPHPDDDQESESEQDEDEEEAAKMKEFFAADE-PKSDTNK-GNA 255
Score = 43 (20.2 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 16/84 (19%), Positives = 32/84 (38%)
Query: 300 APALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSN 359
AP+ + A D+ I + + E E ++ P + KK R + SN
Sbjct: 2 APSSKRKAINDDFITTISDNEADEFVEEEEVIQEEAPPK-KKSKTIPKKKQKRSSKKASN 60
Query: 360 GEQPKKSSNKSLGRIIPGEDSDSD 383
+ + + + + G++ D D
Sbjct: 61 DDDAEDEEDGHIEGVW-GQNDDDD 83
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 605 (218.0 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 139/361 (38%), Positives = 211/361 (58%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
KT+ + G+ ++ E KL ++ P PIQ +A+PV+++ RD IG+A+TGSGKT AF LP++
Sbjct: 46 KTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVI 105
Query: 527 RHIKDQP-PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
+ + + P P A +++APTREL QI +GVR V + GG + Q
Sbjct: 106 QELWNNPSPFFA------VVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAV 159
Query: 586 ELKRGTEIVVCTPGRMIDIL-CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644
L + ++VCTPGR++D L T G + NL+ YL+MDEADR+ DM F P I +I++
Sbjct: 160 ALSKKPHVLVCTPGRLMDHLENTKGFSLKNLK---YLIMDEADRLLDMDFGPIIDKILKI 216
Query: 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704
I +R+T+LFSAT +VE L R L++PV + V + + Q P + L
Sbjct: 217 IPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYL 276
Query: 705 LELLGEWYEKGKILIF---VHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
+ L+ E I+IF V+ ++ L R L G+ + LHG Q++R ++ FK
Sbjct: 277 VYLVNE-LAGNSIIIFARTVNDTQRLAILLRTL---GFSAIPLHGQLSQSNRLGALNKFK 332
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
S + L+AT VAARGLD+ +++VIN+D P + Y+HRVGRT RAGR G +I +++
Sbjct: 333 SGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIALVTQY 392
Query: 822 D 822
D
Sbjct: 393 D 393
Score = 38 (18.4 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 340 TDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRI 374
T ++ E + GD ++N E PK + K LG I
Sbjct: 23 TSNSSSEKSSENNNGDSQNN-EAPK--TFKELGVI 54
>MGI|MGI:1925644 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1925644 GO:GO:0005524
GO:GO:0005730 GO:GO:0003723 EMBL:CH466556 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 CTD:11056
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AK080767 EMBL:AK133545 EMBL:AL645615 EMBL:BC029094
IPI:IPI00336965 RefSeq:NP_084372.2 UniGene:Mm.280544
ProteinModelPortal:Q8K301 SMR:Q8K301 STRING:Q8K301
PhosphoSite:Q8K301 PaxDb:Q8K301 PRIDE:Q8K301
Ensembl:ENSMUST00000049257 GeneID:78394 KEGG:mmu:78394
InParanoid:Q3UZY9 NextBio:348796 Bgee:Q8K301 CleanEx:MM_DDX52
Genevestigator:Q8K301 GermOnline:ENSMUSG00000020677 Uniprot:Q8K301
Length = 598
Score = 595 (214.5 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 138/419 (32%), Positives = 239/419 (57%)
Query: 437 EIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTG----LTSKIMETIRKLNYEKPMP 492
++ + E+V+ +R + ++ + G D+P PI T+ Q + S++++ I ++ P P
Sbjct: 132 KLEHLRKEKVNFFRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQVPTP 191
Query: 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552
IQ QA+PV++ GR+ + A TGSGKTLAF +P+L +K QP G L+++PTREL
Sbjct: 192 IQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK-QP---TNKGFRALVISPTREL 247
Query: 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS-ELKRGTEIVVCTPGRMIDILCTSGGK 611
QIH ++ K ++ G R ++ + A++ + + +I+V TP R+I +L
Sbjct: 248 ASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPG 307
Query: 612 ITNLRRVTYLVMDEADRMFD---MGFEPQITRI-VQNIRPDRQTVLFSATFPRQVEILAR 667
I +L V +LV+DE+D++F+ GF Q+ I + P + +FSATF VE +
Sbjct: 308 I-DLTNVEWLVVDESDKLFEDGKTGFREQLASIFLACTSPKVRRAMFSATFAYDVEQWCK 366
Query: 668 KVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK 726
L+ V + +G R+ + + Q L+ V E+ + L + EL+ + + K +L+FV S E+
Sbjct: 367 LNLDNVVSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGF-KPPVLVFVQSIER 425
Query: 727 CDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786
LF +L+ G +H + Q R++T+ F++ +LI T++ ARG+D K + LV
Sbjct: 426 AKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNLV 485
Query: 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
IN+D P +Y+HR+GRTGRAG +G A+TF +E+D + ++ + VP+ +K
Sbjct: 486 INYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 544
Score = 48 (22.0 bits), Expect = 4.2e-61, Sum P(2) = 4.2e-61
Identities = 21/101 (20%), Positives = 42/101 (41%)
Query: 361 EQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHS 420
++PKK K + +P ++ D D G + KK + KL +
Sbjct: 83 KEPKKKKRKKMTSEVPAQE-DFDGGIQWTSSVEAKLQDEK--VSGEKKLTSGKLEHLRKE 139
Query: 421 KIDYQPFRKNFYIEVKEIARMTPEEVSAYRK-QLELKIHGK 460
K+++ FR I V+ P+ ++ +++ E KI+ +
Sbjct: 140 KVNF--FRNKHKIHVQ--GTDLPDPIATFQQLDQEYKINSR 176
>UNIPROTKB|Q48PB7 [details] [associations]
symbol:PSPPH_0449 "ATP-dependent RNA helicase RhlE,
putative" species:264730 "Pseudomonas syringae pv. phaseolicola
1448A" [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000058 GenomeReviews:CP000058_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
RefSeq:YP_272752.1 ProteinModelPortal:Q48PB7 GeneID:3558820
KEGG:psp:PSPPH_0449 PATRIC:19969930 OMA:DGDLMGF
ProtClustDB:CLSK865855 Uniprot:Q48PB7
Length = 625
Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
Identities = 137/381 (35%), Positives = 220/381 (57%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI--K 530
GL+ ++ I Y +P P+Q +A+P ++ GRD + A+TG+GKT F LP+L +
Sbjct: 7 GLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILERLFPN 66
Query: 531 DQPPVAAGDGPVG---LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
P + GP L++ PTREL Q+H + +A+ + ++GG G+ Q+ +
Sbjct: 67 GVPDKSQRHGPRQPRVLVLTPTRELAAQVHESFKLYARDLKFVSACIFGGVGMNPQVQAM 126
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
RG +++V PGR++D+ +G +L V LV+DEADRM DMGF + +++ +
Sbjct: 127 SRGVDVLVACPGRLLDL---AGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARLPA 183
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV-EVRPESDR-FLRLL 705
RQ +LFSATF + LA K+L+ P I+V + + I Q V + R L L
Sbjct: 184 KRQNLLFSATFSNDITSLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAANHKRSLLAHL 243
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
+G W + +L+F ++ + L L KHG +++HG K Q R ++DFK+
Sbjct: 244 ITVGAWEQ---VLVFTRTKHGANRLAEYLDKHGLAAVAIHGNKSQNARTKALADFKAGDV 300
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
+++AT +AARGLD+ +L V+NF+ PN EDYVHR+GRTGRAGR G AI+ ++ ++ K
Sbjct: 301 RIMVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEK- 359
Query: 826 SPDLVKALE-LSEQVVPD-DL 844
L+K++E +++Q + D DL
Sbjct: 360 ---LLKSIERMTKQKIADGDL 377
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 142/408 (34%), Positives = 232/408 (56%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+ ++ + G+ + + + +L Y P P+QA +P ++SGRD + A TGSGKT AF LP+
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 526 LRHIKDQPPVAAGDGPVG-LIMAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQ 582
L+ + + G V L++ PTREL QQ+ +A ++ V +GG V
Sbjct: 68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127
Query: 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
Q+ L+ G +++V TPGR++D+L ++ K+T +V+ V+DEADRM +GF ++ +++
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLT---QVSAFVLDEADRMLSLGFTEELEQVL 184
Query: 643 QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 702
+ +QT+LFSATFP +V L K+L++P+E + +S I Q V + ++
Sbjct: 185 AALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHL--QSEQESTIEQRV-ITVNREQKT 241
Query: 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
LL L + ++ + LIFV ++ C+ L + L K G HG K Q R + FK+
Sbjct: 242 ALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKN 301
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
++LIAT +AARG+D+ +L +VINFD P DY+HR+GR+GRAG G A+T IS E+
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
Query: 823 AKYSPDLVKA--LELSEQVVPDDLKALADSFMAKVNQGLEQA--HGTG 866
+ + K ++L + +P +A A+ + + Q QA GTG
Sbjct: 362 YHHFGVIEKKNKIKLVREQIPG-FEANAEIPLEVLAQEKPQAKPEGTG 408
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 142/408 (34%), Positives = 232/408 (56%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+ ++ + G+ + + + +L Y P P+QA +P ++SGRD + A TGSGKT AF LP+
Sbjct: 8 VASFAELGIIAPLGNRLTELGYVSPTPVQAATIPAVLSGRDVLAGANTGSGKTAAFALPL 67
Query: 526 LRHIKDQPPVAAGDGPVG-LIMAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQ 582
L+ + + G V L++ PTREL QQ+ +A ++ V +GG V
Sbjct: 68 LQRLSEAKSADKSAGVVRCLVLVPTRELAQQVADSFLSYASHFNGQLKIVAAFGGVSVNL 127
Query: 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
Q+ L+ G +++V TPGR++D+L ++ K+T +V+ V+DEADRM +GF ++ +++
Sbjct: 128 QMQSLRAGADVLVATPGRLLDLLASNALKLT---QVSAFVLDEADRMLSLGFTEELEQVL 184
Query: 643 QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 702
+ +QT+LFSATFP +V L K+L++P+E + +S I Q V + ++
Sbjct: 185 AALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYHL--QSEQESTIEQRV-ITVNREQKT 241
Query: 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
LL L + ++ + LIFV ++ C+ L + L K G HG K Q R + FK+
Sbjct: 242 ALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKRGISAEVFHGDKAQGARTRVLDGFKN 301
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
++LIAT +AARG+D+ +L +VINFD P DY+HR+GR+GRAG G A+T IS E+
Sbjct: 302 GEISVLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAGEAGLAVTLISHEE 361
Query: 823 AKYSPDLVKA--LELSEQVVPDDLKALADSFMAKVNQGLEQA--HGTG 866
+ + K ++L + +P +A A+ + + Q QA GTG
Sbjct: 362 YHHFGVIEKKNKIKLVREQIPG-FEANAEIPLEVLAQEKPQAKPEGTG 408
>WB|WBGene00001600 [details] [associations]
symbol:glh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043186 "P granule" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008432 "JUN kinase
binding" evidence=IPI] [GO:0017151 "DEAD/H-box RNA helicase
binding" evidence=IPI] [GO:0043621 "protein self-association"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 167/478 (34%), Positives = 259/478 (54%)
Query: 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEV--SAYRKQLELKIHGKDVP-KPIKTW 469
K + + +K+ Y P EV + ++ + + ++L G+ V +P K++
Sbjct: 242 KNGVQEPTKVTYVPVVDKME-EVFSMLKINAGDFFDKFFDASVQLVSRGQPVTIQPCKSF 300
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
+ + + + + Y + PIQ LP++ G+D + A+TGSGKT AF+LP++ +
Sbjct: 301 SDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRL 360
Query: 530 ---KDQPPVAAGDG-PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
KD A G P +I+ PTREL QI+++ RKF+ + PVYGG V S
Sbjct: 361 ILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKS 420
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIV-- 642
++ +G I+V T GR + C G L + YLV+DEADRM D MGF P+I +I+
Sbjct: 421 QIMKGCTIIVGTIGR-VKHFCEDGA--IKLDKCRYLVLDEADRMIDSMGFGPEIEQIINY 477
Query: 643 QNI-RPD-RQTVLFSATFPRQVEILARKVLNKPVE-IQVGGRSVVNKDITQLVEVRPESD 699
+N+ + D RQT++FSATFP V+ ARK+L + I + NK + Q E+ +
Sbjct: 478 KNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTS 537
Query: 700 RFLRLLELLG---EWY--EKG------KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAK 748
+ +LL+LLG + Y EK K ++FV Q+ D L + P +++HGA+
Sbjct: 538 KVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAR 597
Query: 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808
+Q +R + + F+S +LIAT+V RGLD+K ++ VIN+D PN+ +DY+HR+GRTGR
Sbjct: 598 EQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRV 657
Query: 809 GRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGT 865
G G A +FIS +D + P LV+ L +EQVVP +K E A GT
Sbjct: 658 GNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMK--------------EAAGGT 701
>UNIPROTKB|O01836 [details] [associations]
symbol:glh-3 "ATP-dependent RNA helicase glh-3"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR001878 InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194
SMART:SM00343 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0008270 GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043186
EMBL:FO080197 GeneTree:ENSGT00620000087942 EMBL:AF079509 PIR:T15231
RefSeq:NP_491681.1 UniGene:Cel.19392 ProteinModelPortal:O01836
SMR:O01836 IntAct:O01836 STRING:O01836 PaxDb:O01836
EnsemblMetazoa:B0414.6.1 EnsemblMetazoa:B0414.6.2 GeneID:172245
KEGG:cel:CELE_B0414.6 UCSC:B0414.6 CTD:172245 WormBase:B0414.6
InParanoid:O01836 NextBio:874651 Uniprot:O01836
Length = 720
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 167/478 (34%), Positives = 259/478 (54%)
Query: 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEV--SAYRKQLELKIHGKDVP-KPIKTW 469
K + + +K+ Y P EV + ++ + + ++L G+ V +P K++
Sbjct: 242 KNGVQEPTKVTYVPVVDKME-EVFSMLKINAGDFFDKFFDASVQLVSRGQPVTIQPCKSF 300
Query: 470 HQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
+ + + + + Y + PIQ LP++ G+D + A+TGSGKT AF+LP++ +
Sbjct: 301 SDSDIPQSMRRNVERAGYTRTTPIQQYTLPLVADGKDILACAQTGSGKTAAFLLPIMSRL 360
Query: 530 ---KDQPPVAAGDG-PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
KD A G P +I+ PTREL QI+++ RKF+ + PVYGG V S
Sbjct: 361 ILEKDLNYGAEGGCYPRCIILTPTRELADQIYNEGRKFSYQSVMEIKPVYGGINVGYNKS 420
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIV-- 642
++ +G I+V T GR + C G L + YLV+DEADRM D MGF P+I +I+
Sbjct: 421 QIMKGCTIIVGTIGR-VKHFCEDGA--IKLDKCRYLVLDEADRMIDSMGFGPEIEQIINY 477
Query: 643 QNI-RPD-RQTVLFSATFPRQVEILARKVLNKPVE-IQVGGRSVVNKDITQLVEVRPESD 699
+N+ + D RQT++FSATFP V+ ARK+L + I + NK + Q E+ +
Sbjct: 478 KNMPKNDKRQTMMFSATFPSSVQEAARKLLREDYTMITIDKIGAANKCVIQEFELCDRTS 537
Query: 700 RFLRLLELLG---EWY--EKG------KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAK 748
+ +LL+LLG + Y EK K ++FV Q+ D L + P +++HGA+
Sbjct: 538 KVDKLLKLLGIDIDTYTTEKNSDVFVKKTIVFVAQQKMADTLASIMSAAQVPAITIHGAR 597
Query: 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808
+Q +R + + F+S +LIAT+V RGLD+K ++ VIN+D PN+ +DY+HR+GRTGR
Sbjct: 598 EQKERSAALKLFRSGAKPVLIATAVVERGLDIKGVDHVINYDMPNNIDDYIHRIGRTGRV 657
Query: 809 GRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGT 865
G G A +FIS +D + P LV+ L +EQVVP +K E A GT
Sbjct: 658 GNSGRATSFISLADDVQILPQLVRTLADAEQVVPSWMK--------------EAAGGT 701
>UNIPROTKB|A5D7C1 [details] [associations]
symbol:DDX52 "Probable ATP-dependent RNA helicase DDX52"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:BC140501 IPI:IPI00692860
RefSeq:NP_001096708.1 UniGene:Bt.51117 ProteinModelPortal:A5D7C1
SMR:A5D7C1 PRIDE:A5D7C1 Ensembl:ENSBTAT00000013622 GeneID:510826
KEGG:bta:510826 CTD:11056 GeneTree:ENSGT00550000074863
HOGENOM:HOG000242486 HOVERGEN:HBG051332 InParanoid:A5D7C1 KO:K14779
OMA:NVMKQSG OrthoDB:EOG4XKV6Q NextBio:20869637 ArrayExpress:A5D7C1
Uniprot:A5D7C1
Length = 596
Score = 602 (217.0 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 146/442 (33%), Positives = 247/442 (55%)
Query: 414 LSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTG 473
+S V+ D RKN K + ++ E+++ +R + ++ + G D+P PI T+ Q
Sbjct: 107 ISSVEAKIEDKNVKRKNKLTSGK-LEQLRKEKLNFFRNKHKIHVQGTDLPDPIATFQQLD 165
Query: 474 ----LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529
+ S++++ I ++ P PIQ QA+PV++ GR+ + A TGSGKTLAF +P+L H+
Sbjct: 166 QEYKINSRLLQNILDAGFQTPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMHL 225
Query: 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS-ELK 588
K QP G LI++PTREL QIH ++ K ++ G R ++ + A++ +
Sbjct: 226 K-QP---TNKGFRALIISPTRELASQIHRELVKLSEGTGFRIHMIHKAAVAAKKFGPKSS 281
Query: 589 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD---MGFEPQITRIVQNI 645
+ +I+V TP R+I +L I +L V +LV+DE+D++F+ GF Q+ I
Sbjct: 282 KKFDILVTTPNRLIYLLKQDPPGI-DLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLAC 340
Query: 646 RPDR-QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLR 703
+ + +FSATF VE R L+ + + VG R+ + + Q L+ V E+ + L
Sbjct: 341 TSHKVKRAMFSATFAYDVEQWCRLNLDSVITVSVGARNSAVETVEQELLFVGSETGKLLA 400
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
+ EL+ + + +L+FV S E+ LF +L+ G +H + Q R++T+ F++
Sbjct: 401 MRELVKKGFNP-PVLVFVQSIERAKELFHELIYEGINVDVIHADRTQQQRDNTVHSFRAG 459
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LI T++ ARG+D K + LVIN+D P +Y+HR+GRTGRAG KG A+TF +E+D
Sbjct: 460 KIWVLICTALLARGIDFKGVNLVINYDFPTSSVEYIHRIGRTGRAGHKGKAVTFFTEDDK 519
Query: 824 KYSPDLVKALELSEQVVPDDLK 845
+ ++ + VP+ +K
Sbjct: 520 PLLRSVANVIQQAGCPVPEYIK 541
Score = 38 (18.4 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 311 EDIDPLDAFMNSMVLP-EVEKLKNTVE-PSF--TDGNNVESKKMDRK 353
E + LD F N +P + L+ E P T+ + +E KK +RK
Sbjct: 41 EVLQGLDFFGNKKPVPGDCGALRTHQELPDEEKTEESQIERKKQNRK 87
>DICTYBASE|DDB_G0274325 [details] [associations]
symbol:ddx52 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006200 "ATP
catabolic process" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274325 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000151_GR GO:GO:0016887 GO:GO:0003723
EMBL:AAFI02000012 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K14779 RefSeq:XP_643949.1
ProteinModelPortal:Q86IZ9 EnsemblProtists:DDB0234211 GeneID:8619377
KEGG:ddi:DDB_G0274325 OMA:NGITSHE Uniprot:Q86IZ9
Length = 668
Score = 586 (211.3 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 139/419 (33%), Positives = 235/419 (56%)
Query: 436 KEIARMTPE-----EVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKI----METIRKLN 486
K++++ T E E++ +R + +K+ G D+P P+ + Q K+ + I ++
Sbjct: 159 KKVSKETQEDKHKREIATFRNKHRIKVDGTDIPDPMTEFSQLENRFKVRKYLLNNINEIG 218
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
Y++P PIQ Q +P+++ R+ + +A TGSGKT +F +P+L+ + + P G V I+
Sbjct: 219 YKEPSPIQMQVIPILLKEREVVAIAPTGSGKTASFSIPILQALYE--PKKEGFRSV--II 274
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE-LKRGTEIVVCTPGRMIDIL 605
APTREL QQI+ + R +K R + V + Q +E L + +I++ TP R++ ++
Sbjct: 275 APTRELAQQIYRNFRLLSKGKPFR-ICVLSKNLHNQSTNENLIKNYDILITTPLRLVYLI 333
Query: 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTVLFSATFPRQVEI 664
+ + +L +V YLV DEAD++FD F+ Q+ +V + P + LFSAT +QVE
Sbjct: 334 KEN---LLSLNKVEYLVFDEADKLFDKNFQEQVDIVVTACQNPKLKICLFSATMNQQVEE 390
Query: 665 LARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723
L ++ P++I +G ++ + Q L+ V E + L + +L+ + E ILIF S
Sbjct: 391 LGHSIMKNPIKIIIGEQNAAAITVDQKLIYVGKEEGKLLAVRQLIQKGLEP-PILIFTQS 449
Query: 724 QEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783
+E+ LF++L+ G +H + Q R++ + F+ +LI T + ARG+D K +
Sbjct: 450 KERAHDLFQELIFDGINVDVIHSERTQFQRDTIVKKFRMGKIWVLICTELMARGMDFKGV 509
Query: 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842
VINFD P+ Y+HR+GRTGRAGR G A T ++ D P +V A++ S VPD
Sbjct: 510 NFVINFDFPHTLASYIHRIGRTGRAGRPGVAYTLYTDADTPMLPTIVHAMKQSGSHVPD 568
Score = 54 (24.1 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 28/118 (23%), Positives = 49/118 (41%)
Query: 258 SDDEEVPQTGKSETDMDAD-EEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPL 316
S + + Q + E D D D EE K ++ V D D D ++E+ +P
Sbjct: 59 SKKDNIKQKKEEEEDNDNDNEESKEDDDFVEDDDNDDDDDDDDE--------DEENEEPK 110
Query: 317 DA-FMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGR 373
+ F+ V + E+ T+ F N E++ D D +G+ K+ NK + +
Sbjct: 111 EKEFIKHQVNNDEEEEDITL---FNKSN--ENENSDDSDDSDDSGKNKNKNKNKKVSK 163
Score = 43 (20.2 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 254 DREDS-DDEEVPQTGKSETDMDADEEPKPSE 283
D E+S +D++ + ++ D D D+E + +E
Sbjct: 77 DNEESKEDDDFVEDDDNDDDDDDDDEDEENE 107
Score = 43 (20.2 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 255 REDSDDEEVPQTGKSETDMDADEE-PKPSENQ 285
+ED D E + D D DEE +P E +
Sbjct: 82 KEDDDFVEDDDNDDDDDDDDEDEENEEPKEKE 113
Score = 40 (19.1 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 254 DREDSDDEEVPQTG--KSETDMDADEEP-----KPSENQVGDAMLVDSDGG 297
D ED ++EE + K + + D +EE K +EN+ D D G
Sbjct: 100 DDEDEENEEPKEKEFIKHQVNNDEEEEDITLFNKSNENENSDDSDDSDDSG 150
Score = 38 (18.4 bits), Expect = 4.2e-59, Sum P(2) = 4.2e-59
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 239 DANVEEPKAGRNWTLDREDSDDEEVPQT--GKS---ETDMDADEEPKPSENQ 285
D EEPK + + + ++D+EE T KS E D+D+ +N+
Sbjct: 103 DEENEEPKE-KEFIKHQVNNDEEEEDITLFNKSNENENSDDSDDSDDSGKNK 153
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 135/355 (38%), Positives = 204/355 (57%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L++ I+ I L Y KP IQ +A+PV+++G+D I A+TG+GKT +FVLP+L + Q
Sbjct: 8 LSTPILNAIADLGYTKPTAIQQKAIPVVLAGKDIIAAAQTGTGKTASFVLPLLEQLNSQY 67
Query: 534 PVAAGDGPV----GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589
LI+ PTREL Q+ + I ++AK + + + +YGG +Q L
Sbjct: 68 KETGKKLRAKRIRALILVPTRELAVQVEASISQYAKYLDISSMAMYGGVDAQEQKQRLIW 127
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649
G +I+V TPGR++D+ + ++ + + LV+DEADRM DMGF I +I++ + R
Sbjct: 128 GVDILVATPGRLLDM---THQRVLHFDELDMLVLDEADRMLDMGFIDDINKIIERLPEHR 184
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEV-RPESDRFLRLLEL 707
Q +LFSAT +V LA++ ++KPVEI +G I Q LV V + L +
Sbjct: 185 QNLLFSATMSEEVRGLAKRTIHKPVEISIGADKASKPKIEQWLVTVDKANKSALLSHIIT 244
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
W + LIF+ ++ L L K G S+H + Q RE ++DFKS
Sbjct: 245 TQNWQQA---LIFIETKHGAAKLVSQLEKRGIVAESIHSGRAQDIREKILNDFKSGKIKF 301
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
L+AT++AARGLD+ EL VIN+D P +DY+HR+GRTGRAG G AI+ +S+++
Sbjct: 302 LVATAIAARGLDIGELSRVINYDLPAQVDDYIHRIGRTGRAGASGEAISLVSKDN 356
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 136/360 (37%), Positives = 211/360 (58%)
Query: 477 KIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA 536
+++ I + YE P IQA +P +M+G D +G+A+TG+GKT AF +PML I V
Sbjct: 23 RVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSKIDITSKV- 81
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRGTEIVV 595
P L++ PTREL Q+ ++ + + +P+YGGS A Q++ L+RG ++VV
Sbjct: 82 ----PQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQVVV 137
Query: 596 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655
TPGRMID L + +L RV +LV+DEAD M MGF + RI+ +Q LFS
Sbjct: 138 GTPGRMIDHLERA---TLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFS 194
Query: 656 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEK 714
AT P + L+ K L+ P E+ ++ V ++I+Q ++V + D R+LE+ E +E
Sbjct: 195 ATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVARKMDALTRVLEV--EPFEA 252
Query: 715 GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774
+++FV +++ + + L G+ ++ G Q RE TI+ + ++L+AT VA
Sbjct: 253 --MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVA 310
Query: 775 ARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834
ARGLDV+ + V+N+D P+ E YVHR+GRTGRAGR G A+ F+S + L+KA+E
Sbjct: 311 ARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELH----LLKAIE 366
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 584 (210.6 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 139/363 (38%), Positives = 202/363 (55%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
++ L+ I++ + L +E P IQ + +P+ + G+D +G A TGSGKT AF++P+L
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ +P LI+ PTREL Q HS K A + GG + Q EL
Sbjct: 320 RLLYRPKKVPTTRV--LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQEL 377
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
++ +IV+ TPGR ID + S G T + + +VMDEADRM + GF ++ I+Q
Sbjct: 378 RKRPDIVIATPGRFIDHMRNSQG-FT-VENIEIMVMDEADRMLEDGFADELNEIIQACPK 435
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESD--RFLRL 704
RQT+LFSAT +V+ L R LN+PV + V + K +TQ V VRP+ + R L
Sbjct: 436 SRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNKKTTAKLLTQEFVRVRPQRELLRPAML 495
Query: 705 LELLGEWYEKGKILIFVHSQ---EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
+ L E + + + +IF S+ K +F LL +HG+ Q R + DF+
Sbjct: 496 IYLCKELFHR-RTIIFFRSKAFAHKMRVIF-GLLSLN--ATEIHGSLSQEQRVRALEDFR 551
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
CN L+AT VA+RG+D+K +E+VIN++AP +E Y+HRVGRT RAGR G AIT E
Sbjct: 552 DGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGRTARAGRSGRAITLAGEG 611
Query: 822 DAK 824
D K
Sbjct: 612 DRK 614
Score = 52 (23.4 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 27/123 (21%), Positives = 53/123 (43%)
Query: 257 DSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPL 316
+++DE +SE + D E P PS + D + SAA + ++E+I
Sbjct: 186 ENEDESSQDESESEEEDDITE-PVPSFANISTQ---DFNSDSAAGSSD-SEEDEEEIAKK 240
Query: 317 DAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIP 376
+AF E +K K+ + + + ++ + KG E P + +K++ +
Sbjct: 241 NAFF-----AEGDKEKSMMTTTHSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALL 295
Query: 377 GED 379
G+D
Sbjct: 296 GKD 298
Score = 49 (22.3 bits), Expect = 4.8e-60, Sum P(2) = 4.8e-60
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 259 DDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDE------- 311
DD+E P + SE ++ E+ + + + +D G A + +++DE
Sbjct: 145 DDDEFPSSFPSEEELQEPEQENIDSDD--EDLAIDGFGAGAIAENEDESSQDESESEEED 202
Query: 312 DI-DPLDAFMN 321
DI +P+ +F N
Sbjct: 203 DITEPVPSFAN 213
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 138/361 (38%), Positives = 208/361 (57%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
KT+ G+T + E +L + KP IQ +A+P+ + GRD IG+A+TGSGKT AF LP+L
Sbjct: 26 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 85
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + P L++ PTREL QI +GV+C + GG Q
Sbjct: 86 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQCAVIVGGIDSMSQSLA 140
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L + IV+ TPGR+ID L + G NLR + YLVMDEADR+ +M FE ++ +I++ I
Sbjct: 141 LAKKPHIVIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVIP 198
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706
DR+T LFSAT ++V+ L R L PV+ V + + + Q P + L+
Sbjct: 199 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 258
Query: 707 LLGEWYEKGKILIFV---HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
+L E +IF ++ ++ L R+L G+ + LHG Q+ R +++ FK+
Sbjct: 259 ILNE-LAGNSFMIFCSTCNNTQRTALLLRNL---GFTAIPLHGQMSQSKRLGSLNKFKAK 314
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
++L+AT VA+RGLD+ +++V+NFD P H +DY+HRVGRT RAGR G AITF+++ D
Sbjct: 315 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV 374
Query: 824 K 824
+
Sbjct: 375 E 375
>TAIR|locus:2087832 [details] [associations]
symbol:PMH1 "putative mitochondrial RNA helicase 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IMP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0043234 GO:GO:0003677 GO:GO:0009651
GO:GO:0009409 GO:GO:0009414 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268800 ProtClustDB:CLSN2684125 EMBL:AY091091
EMBL:AJ010461 IPI:IPI00517476 PIR:T51341 RefSeq:NP_188870.1
UniGene:At.25190 ProteinModelPortal:Q9LUW6 SMR:Q9LUW6 IntAct:Q9LUW6
STRING:Q9LUW6 PaxDb:Q9LUW6 PRIDE:Q9LUW6 EnsemblPlants:AT3G22310.1
GeneID:821800 KEGG:ath:AT3G22310 GeneFarm:922 TAIR:At3g22310
InParanoid:Q9LUW6 OMA:VSQGRQV PhylomeDB:Q9LUW6
Genevestigator:Q9LUW6 GermOnline:AT3G22310 Uniprot:Q9LUW6
Length = 610
Score = 617 (222.3 bits), Expect = 3.1e-60, P = 3.1e-60
Identities = 146/401 (36%), Positives = 229/401 (57%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML-RHIKD 531
G++ +I++ ++ EK PIQ L M GRD IG A+TG+GKTLAF +P++ + IK
Sbjct: 122 GISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKF 181
Query: 532 QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGT 591
G P L++APTREL +Q+ + R+ A + C+ YGG+ + QQ+ EL G
Sbjct: 182 NAKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICL--YGGTPIGQQMRELNYGI 239
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
++ V TPGR+ID++ G + NL V ++V+DEAD+M +GF + I+Q + RQ+
Sbjct: 240 DVAVGTPGRIIDLM--KRGAL-NLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQS 296
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPES-DRFLRLLELLG 709
++FSAT P + L +K LN P+ I + G S D + + +S R + L+
Sbjct: 297 MMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQKLADGITMYSIAADSYGRASIIGPLVK 356
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
E + GK ++F ++ D L L K Y C +LHG Q RE T++ F+ ++L+
Sbjct: 357 EHGKGGKCIVFTQTKRDADRLAFGLAK-SYKCEALHGDISQAQRERTLAGFRDGNFSILV 415
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
AT VAARGLDV ++LVI+++ PN+ E +VHR GRTGRAG+KG AI ++ +
Sbjct: 416 ATDVAARGLDVPNVDLVIHYELPNNTETFVHRTGRTGRAGKKGSAILIHGQDQTR----A 471
Query: 830 VKALELSEQVVPDDLKALA-DSFMAKVNQGLEQAHGTGYGG 869
VK +E ++L ++A + A + +G+ G +GG
Sbjct: 472 VKMIEKEVGSRFNELPSIAVERGSASMFEGVGARSGGSFGG 512
>RGD|621743 [details] [associations]
symbol:Ddx52 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 52"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003724 "RNA helicase activity" evidence=NAS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:621743
GO:GO:0005524 GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
CTD:11056 GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486
HOVERGEN:HBG051332 KO:K14779 OMA:NVMKQSG OrthoDB:EOG4XKV6Q
EMBL:AB055628 IPI:IPI00201365 RefSeq:NP_445977.1 UniGene:Rn.18605
ProteinModelPortal:Q99PT0 SMR:Q99PT0 PRIDE:Q99PT0
Ensembl:ENSRNOT00000003600 GeneID:85432 KEGG:rno:85432
InParanoid:Q99PT0 NextBio:617542 Genevestigator:Q99PT0
GermOnline:ENSRNOG00000002612 Uniprot:Q99PT0
Length = 598
Score = 585 (211.0 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 135/420 (32%), Positives = 239/420 (56%)
Query: 436 KEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTG----LTSKIMETIRKLNYEKPM 491
+++ + E+++ +R + ++ + G D+P PI T+ Q ++ ++++ I ++ P
Sbjct: 131 EKLEHLRKEKINFFRNKHKIHVQGTDLPDPIATFQQLDQEYKISPRLLQNILDAGFQVPT 190
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
PIQ QA+PV++ GR+ + A TGSGKTLAF +P+L +K QP G L+++PTRE
Sbjct: 191 PIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLK-QP---TNKGFRALVISPTRE 246
Query: 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS-ELKRGTEIVVCTPGRMIDILCTSGG 610
L QIH ++ K ++ G R ++ + A++ + + +I+V TP R+I +L
Sbjct: 247 LASQIHRELIKISEGTGFRIHMIHKAAIAAKKFGPKSSKKFDILVTTPNRLIYLLKQEPP 306
Query: 611 KITNLRRVTYLVMDEADRMFD---MGFEPQITRI-VQNIRPDRQTVLFSATFPRQVEILA 666
I +L V +LV+DE+D++F+ GF Q+ I + P + +FSATF VE
Sbjct: 307 GI-DLTSVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSPKVRRAMFSATFAYDVEQWC 365
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725
+ L+ V + +G R+ + + Q L+ V E+ + L + EL+ + + +L+FV S E
Sbjct: 366 KLNLDNIVSVSIGARNSAVETVEQELLFVGSETGKLLAMRELVKKGFNP-PVLVFVQSIE 424
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785
+ LF +L+ G +H + Q R++T+ F++ +LI T++ ARG+D K + L
Sbjct: 425 RAKELFHELIYEGINVDVIHAERTQQQRDNTVHSFRAGKIWVLICTALLARGIDFKGVNL 484
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
VIN+D P +Y+HR+GRTGRAG +G A+TF +E+D + ++ + VP+ +K
Sbjct: 485 VINYDFPTSSVEYIHRIGRTGRAGNRGKAVTFFTEDDKPLLRSVANVIQQAGCPVPEYIK 544
Score = 49 (22.3 bits), Expect = 3.8e-60, Sum P(2) = 3.8e-60
Identities = 24/106 (22%), Positives = 42/106 (39%)
Query: 353 KGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAE 412
+G ++PKK K + +P ++ D D G KK +E
Sbjct: 75 EGGLLERSKEPKKKKRKKMTADVPAQE-DLD-GTIQWTSSVEAKLQDKK-ANGEKKLTSE 131
Query: 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRK-QLELKI 457
KL + KI++ FR I V+ P+ ++ +++ E KI
Sbjct: 132 KLEHLRKEKINF--FRNKHKIHVQ--GTDLPDPIATFQQLDQEYKI 173
>ASPGD|ASPL0000069536 [details] [associations]
symbol:AN7424 species:162425 "Emericella nidulans"
[GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:AACD01000129 EMBL:BN001304 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268804 KO:K14811 RefSeq:XP_680693.1
GeneID:2869574 KEGG:ani:AN7424.2 OrthoDB:EOG42JS0S Uniprot:Q5AWA6
Length = 488
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 143/366 (39%), Positives = 212/366 (57%)
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
+ P IQ+ P++ +GRD IG+A+TGSGKTLAF LP L+ + D P+ +++
Sbjct: 93 FASPTAIQSATWPLLFAGRDVIGIAETGSGKTLAFGLPCLKKVLDLKTKQKSCRPLAVVI 152
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
+PTREL QI+ + KFA+ + ++ ++GG +Q LK +VV TPGR+ D+
Sbjct: 153 SPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDL-- 209
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD-RQTVLFSATFPRQVEIL 665
+ G + +L RV YLV+DEADRM D GFE I I+ + RQTV+F+AT+P V L
Sbjct: 210 QNDGSL-DLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNL 268
Query: 666 ARKVLNKPVEIQVGGRSVV----NKDITQLVEVRPESDRFLRLLELLGEWYEKG---KIL 718
A + PV + +GG N I Q+VEV ++ RL+++L +++G K+L
Sbjct: 269 ASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNR-HQRGTPDKVL 327
Query: 719 IFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778
F +++ + R L G+ +HG Q +R ++ FKS +L+AT VAARGL
Sbjct: 328 AFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSGAATVLVATDVAARGL 387
Query: 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838
D+ ++LV+N P EDYVHR+GRTGRAG G AIT +E D S L+ L+ + Q
Sbjct: 388 DIPHVKLVVNVTFPLTVEDYVHRIGRTGRAGADGHAITLFTETDKAQSGALINVLKAANQ 447
Query: 839 VVPDDL 844
VP+ L
Sbjct: 448 EVPEAL 453
>UNIPROTKB|Q8EGU0 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 140/355 (39%), Positives = 215/355 (60%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL+S ++ I + Y++ +Q Q +P+ + G+D + A+TG+GKT AF LP+L + +
Sbjct: 7 GLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAK 66
Query: 533 PPVAAGDGPV--GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
P D P+ L+M PTREL Q+ ++I+K+++ + ++ + VYGG+ + Q +++G
Sbjct: 67 P----ADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
+I+V TPGR+ DI+ G +L VT LV+DEADRM D+GF I ++ + I P Q
Sbjct: 123 VDILVATPGRLFDII---GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL-ELLG 709
T+LFSAT+ V+ L+ K+LN+P + V + + + QLV R + R LL EL+G
Sbjct: 180 TMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST-VEQLV-YRVDKRRKAELLSELVG 237
Query: 710 E--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
W + +L+F ++E + L ++L G HG K Q R + DFK+ +
Sbjct: 238 RNNWRQ---VLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
L+AT VAARGLD++ L LVIN + P EDYVHR+GRTGRAG G AI+F+S D
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPAD 349
>TIGR_CMR|SO_1501 [details] [associations]
symbol:SO_1501 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807
OMA:GGANMNP RefSeq:NP_717118.1 ProteinModelPortal:Q8EGU0
GeneID:1169311 KEGG:son:SO_1501 PATRIC:23522644
ProtClustDB:CLSK906294 Uniprot:Q8EGU0
Length = 456
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 140/355 (39%), Positives = 215/355 (60%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL+S ++ I + Y++ +Q Q +P+ + G+D + A+TG+GKT AF LP+L + +
Sbjct: 7 GLSSPLLNAITECGYQQLTQVQQQVIPLALVGKDIMACAQTGTGKTAAFALPVLEQLAAK 66
Query: 533 PPVAAGDGPV--GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590
P D P+ L+M PTREL Q+ ++I+K+++ + ++ + VYGG+ + Q +++G
Sbjct: 67 P----ADKPLLRALVMTPTRELAIQVCANIQKYSQFLPLKTLAVYGGANMNPQRKGVEQG 122
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
+I+V TPGR+ DI+ G +L VT LV+DEADRM D+GF I ++ + I P Q
Sbjct: 123 VDILVATPGRLFDII---GQFNLDLSSVTTLVIDEADRMLDLGFVRDIEKVKRLIAPVHQ 179
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL-ELLG 709
T+LFSAT+ V+ L+ K+LN+P + V + + + QLV R + R LL EL+G
Sbjct: 180 TMLFSATYSDAVKQLSHKMLNQPQWVNVAENTTAST-VEQLV-YRVDKRRKAELLSELVG 237
Query: 710 E--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
W + +L+F ++E + L ++L G HG K Q R + DFK+ +
Sbjct: 238 RNNWRQ---VLVFASTKECAEHLLQELTLDGISAGVFHGDKTQGARNRVLDDFKAGKLRV 294
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
L+AT VAARGLD++ L LVIN + P EDYVHR+GRTGRAG G AI+F+S D
Sbjct: 295 LVATDVAARGLDIQALPLVINLELPFLAEDYVHRIGRTGRAGLSGRAISFVSPAD 349
>SGD|S000002651 [details] [associations]
symbol:PRP28 "RNA helicase in the DEAD-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=TAS] [GO:0005681 "spliceosomal
complex" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0000354 "cis
assembly of pre-catalytic spliceosome" evidence=TAS] [GO:0005682
"U5 snRNP" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002651 GO:GO:0005524
GO:GO:0005737 EMBL:BK006938 GO:GO:0005681 GO:GO:0005682
GO:GO:0003676 EMBL:Z49701 GeneTree:ENSGT00690000102171
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000354
RefSeq:NP_010529.3 GeneID:851830 KEGG:sce:YDR243C KO:K12858
HOGENOM:HOG000268796 OrthoDB:EOG4KPXK0 EMBL:X56934 PIR:A39624
RefSeq:NP_878065.3 ProteinModelPortal:P23394 SMR:P23394
DIP:DIP-6324N IntAct:P23394 MINT:MINT-599541 STRING:P23394
PaxDb:P23394 PeptideAtlas:P23394 EnsemblFungi:YDR243C
GeneID:1466436 KEGG:sce:YDR246W-A CYGD:YDR243c OMA:HEMNERD
NextBio:969715 Genevestigator:P23394 GermOnline:YDR243C
Uniprot:P23394
Length = 588
Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
Identities = 171/541 (31%), Positives = 270/541 (49%)
Query: 319 FMNSMVLPEVEKLKNTVE---PSFTDGNNVESKKMDRKGDRRSNGEQPKKSS-NKSLGRI 374
F+N + E+LK E P+ +D VE KK++ + D N KK + +K G
Sbjct: 33 FLNKQERSKQERLKENEESLTPTQSDSAKVEIKKVNSRDDSFFNETNDKKRNPSKQNGSK 92
Query: 375 IPGEDSDSDYGXXXXXXXXXXXXXXXXFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIE 434
++S+ + + K AE + H + E
Sbjct: 93 FHFSWNESEDTLSGYDPIVSTRAIDLLWKGKTPKNAAESSYMGKH------------WTE 140
Query: 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSK--IMETIRKLNYEKPMP 492
K + M + ++ + G V P++ W + + + + I++L + P P
Sbjct: 141 -KSLHEMNERDWRILKEDYAIVTKGGTVENPLRNWEELNIIPRDLLRVIIQELRFPSPTP 199
Query: 493 IQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG----DGPVGLI 545
IQ +P + + RD +GVA TGSGKTLAFV+P+L + PP DGP LI
Sbjct: 200 IQRITIPNVCNMKQYRDFLGVASTGSGKTLAFVIPILIKMSRSPPRPPSLKIIDGPKALI 259
Query: 546 MAPTRELVQQIHSDIRKFAKVMGVR----C--VPVYGGSGVAQQISELKRGTEIVVCTPG 599
+APTRELVQQI + +K K+ C + + GG + + L G +I+V TPG
Sbjct: 260 LAPTRELVQQIQKETQKVTKIWSKESNYDCKVISIVGGHSLEEISFSLSEGCDILVATPG 319
Query: 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ--NIRPD----RQTVL 653
R+ID L + +++V LV+DEAD+M D+GFE Q+T I+ +I D RQT++
Sbjct: 320 RLIDSL---ENHLLVMKQVETLVLDEADKMIDLGFEDQVTNILTKVDINADSAVNRQTLM 376
Query: 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-ESDRFLRLLELLGEWY 712
F+AT +E +A + KPV +G + I Q+VE + D+F +L ++ + Y
Sbjct: 377 FTATMTPVIEKIAAGYMQKPVYATIGVETGSEPLIQQVVEYADNDEDKFKKLKPIVAK-Y 435
Query: 713 EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
+ I+IF++ ++ D L K LHG+K Q RE ++ F++N ++IAT
Sbjct: 436 DP-PIIIFINYKQTADWLAEKFQKETNMKVTILHGSKSQEQREHSLQLFRTNKVQIMIAT 494
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLV 830
+VAARGLD+ + LV+NF +DY+HR+GRTGRA +G A++F+S ED +L
Sbjct: 495 NVAARGLDIPNVSLVVNFQISKKMDDYIHRIGRTGRAANEGTAVSFVSAAEDESLIRELY 554
Query: 831 K 831
K
Sbjct: 555 K 555
>TIGR_CMR|GSU_0491 [details] [associations]
symbol:GSU_0491 "ATP-dependent RNA helicase RhlE"
species:243231 "Geobacter sulfurreducens PCA" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:NP_951550.1 ProteinModelPortal:Q74FW1 GeneID:2686040
KEGG:gsu:GSU0491 PATRIC:22023733 OMA:TTHEHIE ProtClustDB:CLSK827872
BioCyc:GSUL243231:GH27-490-MONOMER Uniprot:Q74FW1
Length = 450
Score = 612 (220.5 bits), Expect = 1.0e-59, P = 1.0e-59
Identities = 147/403 (36%), Positives = 211/403 (52%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ + L I++ + Y +P P+QA A+P + D + A+TG+GKT AFVLP L+
Sbjct: 2 TFAELKLAPHILKAVAACGYTEPTPVQAAAVPRALENVDLLATAQTGTGKTAAFVLPALQ 61
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ PP G GP L++ PTREL QQ+ +R + M VR + GG Q+ L
Sbjct: 62 RLSS-PPQGPGRGPRVLVLTPTRELAQQVTDAVRTYGAFMRVRSGAILGGMPYHAQLRLL 120
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
+ +V TPGR++D+L + +L R+ LV+DEADRM DMGF + RI
Sbjct: 121 SAPVDFIVATPGRLVDLL---DRRSLDLSRLELLVLDEADRMLDMGFSDDVDRIAAASPA 177
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707
RQT+LF+AT + LA ++L +P I + G ++ I Q + V + RLL
Sbjct: 178 TRQTLLFTATMDSAMARLAGRLLREPERIDIAGTKTTHEHIEQRLHVADDLHHKNRLLRH 237
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
L + +IF ++ + L +L G+ +LHG Q R TI+ K L
Sbjct: 238 LITDESLRRAIIFSATKRDAENLALELKAQGHSAAALHGDMPQNARNRTIAAMKQGRIRL 297
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827
L+AT VAARGLDV + VINFD P EDYVHR+GRTGRAG G AI+F S + Y
Sbjct: 298 LVATDVAARGLDVTGISHVINFDLPKFAEDYVHRIGRTGRAGASGIAISFASLNEVNY-- 355
Query: 828 DLVKALELSEQVVPDD-LKALADSF-MAKVNQGLEQAHGTGYG 868
L + Q +P+ + L S + +V+ G + G G G
Sbjct: 356 -LARIERYIGQTLPEHHIPGLEPSRPLRRVSAGSGRKPGMGAG 397
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 134/364 (36%), Positives = 202/364 (55%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
K++ L+ ++ + L YE P +Q + +PV + +D + ++TGSGKT +F +P+
Sbjct: 4 KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
++ + + P L++ PTREL Q+ DI + ++ +YG S A+Q E
Sbjct: 64 EMVEWEE-----NKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLE 118
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
LK+ T IVV TPGR++D + G ++ L R+ YLV+DEAD M +MGF Q+ I+ +
Sbjct: 119 LKQKTHIVVGTPGRVLDHI--EKGTLS-LERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLL 705
R T+LFSAT P VE L+R +N P I++ + I L EVR E L LL
Sbjct: 176 TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEK--LSLL 233
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
+ + +IF +QE D ++R L + YPC +HG Q DR + DF+
Sbjct: 234 KDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
L+AT VAARG+D+ + VIN+D P E YVHR GRTGRAG G AITFI+ + ++
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRF 353
Query: 826 SPDL 829
++
Sbjct: 354 LEEI 357
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 145/370 (39%), Positives = 212/370 (57%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+K + + G++ T+R+ + PIQ +A+PVI+SG+D IG AKTG+GKTLAFVLP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF-AKVMGVRCVPVYGGSGVAQQI 584
L I + + D LI+APTREL QI ++I+K + + + +YGG VAQQ+
Sbjct: 64 LEKIDPE----SSDVQA-LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQL 118
Query: 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644
+LK T IVV TPGR++D + ++NL + V+DEAD+M GF I I+
Sbjct: 119 RKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTI---VLDEADQMLYFGFLYDIEDILDE 175
Query: 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR- 703
+QT+LFSAT P+ ++ LA++ +++P IQV V I Q V +DR
Sbjct: 176 TPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ--RVIETTDRAKPD 233
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L + + + +IF ++ + L+ +L GY C LHG Q RE + F+
Sbjct: 234 ALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREA 293
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
LIAT VAARGLDV + V N+D P E Y+HR+GRTGRAG G AITF++ +D
Sbjct: 294 KIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Query: 824 KYSPDLVKAL 833
K+ ++ K L
Sbjct: 354 KHLEEIEKTL 363
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 145/370 (39%), Positives = 212/370 (57%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+K + + G++ T+R+ + PIQ +A+PVI+SG+D IG AKTG+GKTLAFVLP+
Sbjct: 4 LKNFLELGISETFNHTLRENGITEATPIQEKAIPVILSGKDIIGQAKTGTGKTLAFVLPI 63
Query: 526 LRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF-AKVMGVRCVPVYGGSGVAQQI 584
L I + + D LI+APTREL QI ++I+K + + + +YGG VAQQ+
Sbjct: 64 LEKIDPE----SSDVQA-LIVAPTRELALQITTEIKKMLVQREDINVLAIYGGQDVAQQL 118
Query: 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644
+LK T IVV TPGR++D + ++NL + V+DEAD+M GF I I+
Sbjct: 119 RKLKGNTHIVVATPGRLLDHIRRETIDLSNLSTI---VLDEADQMLYFGFLYDIEDILDE 175
Query: 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR- 703
+QT+LFSAT P+ ++ LA++ +++P IQV V I Q V +DR
Sbjct: 176 TPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSEEVTVDTIEQ--RVIETTDRAKPD 233
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L + + + +IF ++ + L+ +L GY C LHG Q RE + F+
Sbjct: 234 ALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDIPQAKRERVMKSFREA 293
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
LIAT VAARGLDV + V N+D P E Y+HR+GRTGRAG G AITF++ +D
Sbjct: 294 KIQYLIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAAKDE 353
Query: 824 KYSPDLVKAL 833
K+ ++ K L
Sbjct: 354 KHLEEIEKTL 363
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 611 (220.1 bits), Expect = 1.3e-59, P = 1.3e-59
Identities = 134/364 (36%), Positives = 202/364 (55%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
K++ L+ ++ + L YE P +Q + +PV + +D + ++TGSGKT +F +P+
Sbjct: 4 KSFSNYALSKEVRRALTGLGYEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLC 63
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
++ + + P L++ PTREL Q+ DI + ++ +YG S A+Q E
Sbjct: 64 EMVEWEE-----NKPQALVLTPTRELAVQVKEDITNIGRFKRIKAAAIYGKSPFARQKLE 118
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
LK+ T IVV TPGR++D + G ++ L R+ YLV+DEAD M +MGF Q+ I+ +
Sbjct: 119 LKQKTHIVVGTPGRVLDHI--EKGTLS-LERLKYLVIDEADEMLNMGFIDQVEAIIDELP 175
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLL 705
R T+LFSAT P VE L+R +N P I++ + I L EVR E L LL
Sbjct: 176 TKRMTMLFSATLPEDVERLSRTYMNAPTHIEIKAAGITTDKIEHTLFEVREEEK--LSLL 233
Query: 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765
+ + +IF +QE D ++R L + YPC +HG Q DR + DF+
Sbjct: 234 KDVTTIENPDSCIIFCRTQENVDHVYRQLDRVNYPCDKIHGGMVQEDRFGVMDDFRKGKF 293
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825
L+AT VAARG+D+ + VIN+D P E YVHR GRTGRAG G AITFI+ + ++
Sbjct: 294 RYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAITFITPYEDRF 353
Query: 826 SPDL 829
++
Sbjct: 354 LEEI 357
>UNIPROTKB|G3X7G8 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:DAAA02043967 EMBL:DAAA02043968
RefSeq:NP_001179318.1 UniGene:Bt.41740 Ensembl:ENSBTAT00000027398
GeneID:514901 KEGG:bta:514901 NextBio:20871562 Uniprot:G3X7G8
Length = 620
Score = 590 (212.7 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 135/416 (32%), Positives = 226/416 (54%)
Query: 432 YIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPM 491
Y E ++ + +++ R+QL + + G+ VP+PI + G + ++ YE P
Sbjct: 169 YTEHAFVSHLREDQIENLRRQLGITVRGRGVPRPIVDFEHCGFPEALNRNLKASGYEVPT 228
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
PIQ Q +PV + GRD + A TGSGKT AF+LP++ Q P GL++ PTRE
Sbjct: 229 PIQMQMIPVGLLGRDVLASADTGSGKTAAFLLPVILRALSQ-----SKSPSGLVLTPTRE 283
Query: 552 LVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG 610
L QI ++ + +R + GG Q L++ ++++ TPGR++DI+
Sbjct: 284 LAIQIERQAKELMSGLPCLRTALLVGGLPAPPQRHRLRQRIQVIIATPGRLLDIIKQRSV 343
Query: 611 KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVL 670
++ +++ V V+DEAD M MGF+ Q+ +++ + D QTVL SAT P VE LA ++L
Sbjct: 344 ELGSIKIV---VVDEADTMLKMGFQQQVLDVLEQLPHDCQTVLASATIPASVEQLACQLL 400
Query: 671 NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW-YEKGKILIFVHSQEKCDA 729
PV I G R++ + Q+V E + +L E+L + K +L+FV + D
Sbjct: 401 RDPVAITAGERNLPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLGADL 460
Query: 730 LFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
L + K G S+H K Q +R++ + +++++T V RGLD+ ++LV+N
Sbjct: 461 LSEAVQKITGLKSTSVHSDKTQMERKNILKGLLEGDYDVVVSTGVLGRGLDLVGVKLVVN 520
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
FD P+ ++YVH++GR GR G+ G AITFI+ + D+ K ++ + ++P L
Sbjct: 521 FDMPSSMDEYVHQIGRVGRLGQHGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 576
Score = 38 (18.4 bits), Expect = 1.6e-59, Sum P(2) = 1.6e-59
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 340 TDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGE 378
++G +S+ + GD E+P KS +K+ + PGE
Sbjct: 71 SEGTLPDSEPGTQAGDLP---EEPVKSFSKTQRQAEPGE 106
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 139/371 (37%), Positives = 208/371 (56%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK-DQ 532
L +++++T+ +L Y++P PIQ +A+P I++ +D + A+TG+GKT AF LP+L+ + D
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADN 67
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
A L++ PTREL Q+ K+AK +R YGG + Q + G +
Sbjct: 68 QSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGID 127
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
+++ TPGR++D L G NL ++ LV DEADRM DMGF +I +++ + RQT+
Sbjct: 128 VLIATPGRLLDHL-RQGA--LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY 712
LFSAT + ++ +L P I+V + I Q V +SDR + L
Sbjct: 185 LFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHLVRSK 243
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
++LIF +++ D L L K G S HG Q RE + +FK + +L+AT
Sbjct: 244 NWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATD 303
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832
VAARGLD+ EL+ VINF+ P EDY+HR+GRTGRAG G AIT S+EDA ++
Sbjct: 304 VAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETL 363
Query: 833 LE--LSEQVVP 841
L+ L +Q P
Sbjct: 364 LDKRLPQQWYP 374
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 610 (219.8 bits), Expect = 1.7e-59, P = 1.7e-59
Identities = 139/371 (37%), Positives = 208/371 (56%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK-DQ 532
L +++++T+ +L Y++P PIQ +A+P I++ +D + A+TG+GKT AF LP+L+ + D
Sbjct: 8 LNTQLVDTLAELGYQQPTPIQVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQLLMADN 67
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTE 592
A L++ PTREL Q+ K+AK +R YGG + Q + G +
Sbjct: 68 QSDHAAKAIRALVLVPTRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQAVFNAGID 127
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
+++ TPGR++D L G NL ++ LV DEADRM DMGF +I +++ + RQT+
Sbjct: 128 VLIATPGRLLDHL-RQGA--LNLNQLNTLVFDEADRMLDMGFMDEIQAVLKQVPAQRQTL 184
Query: 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY 712
LFSAT + ++ +L P I+V + I Q V +SDR + L
Sbjct: 185 LFSATLDDSIFSFSKNLLRDPKRIEVAKPNTTAAQIEQRVYAI-DSDRKTEFVSHLVRSK 243
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
++LIF +++ D L L K G S HG Q RE + +FK + +L+AT
Sbjct: 244 NWQQVLIFSRTKQGVDKLTAQLNKLGVATQSFHGDLSQGAREKVLQEFKQGLVQVLVATD 303
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832
VAARGLD+ EL+ VINF+ P EDY+HR+GRTGRAG G AIT S+EDA ++
Sbjct: 304 VAARGLDIAELQYVINFELPFIAEDYIHRIGRTGRAGSAGLAITLFSQEDALLLEEVETL 363
Query: 833 LE--LSEQVVP 841
L+ L +Q P
Sbjct: 364 LDKRLPQQWYP 374
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
Identities = 137/361 (37%), Positives = 207/361 (57%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
KT+ G+T + E +L + KP IQ +A+P+ + GRD IG+A+TGSGKT AF LP+L
Sbjct: 50 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 109
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + P L++ PTREL QI +GV+ + GG Q
Sbjct: 110 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 164
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L + IV+ TPGR+ID L + G NLR + YLVMDEADR+ +M FE ++ +I++ I
Sbjct: 165 LAKKPHIVIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVIP 222
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706
DR+T LFSAT ++V+ L R L PV+ V + + + Q P + L+
Sbjct: 223 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYLFIPSKFKDTYLVY 282
Query: 707 LLGEWYEKGKILIFV---HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
+L E +IF ++ ++ L R+L G+ + LHG Q+ R +++ FK+
Sbjct: 283 ILNE-LAGNSFMIFCSTCNNTQRTALLLRNL---GFTAIPLHGQMSQSKRLGSLNKFKAK 338
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
++L+AT VA+RGLD+ +++V+NFD P H +DY+HRVGRT RAGR G AITF+++ D
Sbjct: 339 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV 398
Query: 824 K 824
+
Sbjct: 399 E 399
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 136/361 (37%), Positives = 207/361 (57%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
KT+ G+T + E +L + KP IQ +A+P+ + GRD IG+A+TGSGKT AF LP+L
Sbjct: 24 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 83
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + P L++ PTREL QI +GV+ + GG Q
Sbjct: 84 NALLETPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 138
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L + I++ TPGR+ID L + G NLR + YLVMDEADR+ +M FE ++ +I++ I
Sbjct: 139 LAKKPHIIIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVIP 196
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706
DR+T LFSAT ++V+ L R L PV+ V + + + Q P + L+
Sbjct: 197 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIFIPSKFKDTYLVY 256
Query: 707 LLGEWYEKGKILIFV---HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
+L E +IF ++ ++ L R+L G+ + LHG Q+ R +++ FK+
Sbjct: 257 ILNE-LAGNSFMIFCSTCNNTQRTALLLRNL---GFTAIPLHGQMSQSKRLGSLNKFKAK 312
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
++L+AT VA+RGLD+ +++V+NFD P H +DY+HRVGRT RAGR G AITF+++ D
Sbjct: 313 ARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSGKAITFVTQYDV 372
Query: 824 K 824
+
Sbjct: 373 E 373
>ASPGD|ASPL0000062195 [details] [associations]
symbol:AN10125 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:BN001308 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
OMA:RIRKRDH EnsemblFungi:CADANIAT00001822 Uniprot:C8VQD7
Length = 814
Score = 568 (205.0 bits), Expect = 4.5e-59, Sum P(2) = 4.5e-59
Identities = 133/369 (36%), Positives = 201/369 (54%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
+++ + L+ I+ + +N+ P PIQ + +PV + G+D +G A TGSGKT AFV+P+L
Sbjct: 298 RSFQEFNLSRPILRGLAAVNFTNPTPIQQKTIPVALLGKDIVGSAVTGSGKTAAFVVPIL 357
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ +P V ++M PTREL Q ++ K A + + GG + +Q +
Sbjct: 358 ERLLFRPRKVP-TSRVAILM-PTRELAVQCYNVATKLATYTDITFCQLVGGFSLREQENV 415
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
LK+ ++++ TPGR ID + S + + LV+DEADRM + GF ++ I+ I
Sbjct: 416 LKKRPDVIIATPGRFIDHMRNSASFTVDTLEI--LVLDEADRMLEDGFADELNEILTTIP 473
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRP--ESDRFLR 703
RQT+LFSAT V+ L R LN+PV + V + + Q V +RP E R
Sbjct: 474 KSRQTMLFSATMTDSVDKLIRVGLNRPVRLMVDTKKNTAVTLVQEFVRLRPGREDKRLGY 533
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LL L E Y G++++F +++ + G LHG+ Q R ++ F+
Sbjct: 534 LLHLCKEVYT-GRVIVFFRQKKEAHRVRIVFGLLGLKAAELHGSMSQEQRIKSVESFRDG 592
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
N L+AT +A+RGLD+K +E VIN++AP +E YVHRVGRT RAGR G A T +E D
Sbjct: 593 NVNFLLATDLASRGLDIKGVETVINYEAPQSHEIYVHRVGRTARAGRSGRACTIAAEPDR 652
Query: 824 KYSPDLVKA 832
K VKA
Sbjct: 653 KVVKAAVKA 661
Score = 58 (25.5 bits), Expect = 4.5e-59, Sum P(2) = 4.5e-59
Identities = 26/76 (34%), Positives = 36/76 (47%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDI 313
+ E+ ++EE G E+D D DEE E+ DA DSD A P + +DE
Sbjct: 208 EEEEEEEEEEETEGNDESD-DEDEEE--GEDDDDDAAS-DSDS-VATP---VHHPDDEAS 259
Query: 314 DPLDAFMNSMVLPEVE 329
+P D+ S V E E
Sbjct: 260 EP-DSDAESEVDAEEE 274
Score = 46 (21.3 bits), Expect = 8.3e-58, Sum P(2) = 8.3e-58
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 259 DDEEVPQTGKSETDMDADEEPK 280
DDE +E+++DA+EE K
Sbjct: 255 DDEASEPDSDAESEVDAEEEAK 276
Score = 45 (20.9 bits), Expect = 1.1e-57, Sum P(2) = 1.1e-57
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 243 EEPKAGRNWTLDRED-SDDEEVPQTGKSETD--MDADEE 278
++ K G+ ++++E SDDEE + E D +D++ E
Sbjct: 69 QKGKKGKQASMEKEARSDDEEEEEQDAGEDDGALDSEFE 107
Score = 43 (20.2 bits), Expect = 1.7e-57, Sum P(2) = 1.7e-57
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDG-GSAAPALQIGAAEDED 312
+++ +++ + E + D DE+ S + GD L+ DG G A + E+E+
Sbjct: 154 EKKAEKEKKKKHLDECEDEKDEDEDDAMSVD-FGDDELLAKDGFGMGADGVDEEEEEEEE 212
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 604 (217.7 bits), Expect = 7.3e-59, P = 7.3e-59
Identities = 149/400 (37%), Positives = 229/400 (57%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ GL+S ++E R+L ++P P+Q +P I+ GRDC+G AKTGSGKT AFVLP+L+ +
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR-CVPVYGGSGVAQQISELKR 589
+ P G L++ PTREL QI R K +G++ C+ + GG + Q EL R
Sbjct: 66 EDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCI-IVGGMDMVAQALELSR 119
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQITRIVQNIR 646
+V+ TPGR+ D L +S +++++ +LVMDEADR+ + G F + I+ +
Sbjct: 120 KPHVVIATPGRLADHLRSSN--TFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPV--EIQVGGRSVVNKDITQLVEVRPESDRFL-R 703
RQT+LFSAT ++ L N+P E Q R+V D L+ D +L
Sbjct: 178 TRRQTLLFSATLTDTLKELQGLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L++ + +E I+IF ++ + C L L K +P ++LH Q +R + ++ FKS+
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+ +LIAT VA+RGLD+ +++VIN + P + Y+HRVGRT RAGR+G AIT +++
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ--- 354
Query: 824 KYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAH 863
Y LV A+E EQ+ L+ L+ AKV Q L Q +
Sbjct: 355 -YDIHLVHAIE--EQI-KKQLEELSVE-EAKVLQILTQVN 389
>UNIPROTKB|Q9KS53 [details] [associations]
symbol:VC1407 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 132/358 (36%), Positives = 205/358 (57%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
++ Q GL+ +++T+ +L Y+KP IQ QA+PVI+ GRD I A+TG+GKT +FVLP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
++ Q LI+ PTREL Q+ + ++ K G++ + V+GG Q L
Sbjct: 62 KLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +++V TPGR++D+ G + + +V+DEADRM DMGF I +I+ +
Sbjct: 121 IDGVDVLVATPGRLMDLY---GQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPS 177
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLE 706
+ Q +LFSAT R+V LA+ + P EI + +I+Q L+ V ++ L L
Sbjct: 178 EVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSAL-LSH 236
Query: 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
L+ E + + LIF+ ++ L L K G + H + Q R + DFKS
Sbjct: 237 LINE-QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIK 295
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824
L+AT VAARG+D+ +L V+N+D P ++YVHR+GRTGRA G AI+F+S+++ K
Sbjct: 296 YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353
>TIGR_CMR|VC_1407 [details] [associations]
symbol:VC_1407 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GenomeReviews:AE003852_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:FRNLCAI HSSP:P10081 EMBL:AE004219 PIR:D82203
RefSeq:NP_231050.1 ProteinModelPortal:Q9KS53 DNASU:2614039
GeneID:2614039 KEGG:vch:VC1407 PATRIC:20081876
ProtClustDB:CLSK874358 Uniprot:Q9KS53
Length = 397
Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
Identities = 132/358 (36%), Positives = 205/358 (57%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
++ Q GL+ +++T+ +L Y+KP IQ QA+PVI+ GRD I A+TG+GKT +FVLP+L
Sbjct: 2 SFSQLGLSDVLVQTVAQLGYQKPTHIQTQAIPVILQGRDLIAAAQTGTGKTASFVLPILE 61
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
++ Q LI+ PTREL Q+ + ++ K G++ + V+GG Q L
Sbjct: 62 KLR-QGQTQRKKRVRALILVPTRELAMQVAEKVEQYGKDTGLKSLAVFGGVDEQAQKQRL 120
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +++V TPGR++D+ G + + +V+DEADRM DMGF I +I+ +
Sbjct: 121 IDGVDVLVATPGRLMDLY---GQRAVYFEEIEMVVLDEADRMLDMGFIESINKIIDCLPS 177
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLLE 706
+ Q +LFSAT R+V LA+ + P EI + +I+Q L+ V ++ L L
Sbjct: 178 EVQFLLFSATLSRKVRELAKTAVRDPHEISIAANQASKSNISQWLITVDKDTKSAL-LSH 236
Query: 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
L+ E + + LIF+ ++ L L K G + H + Q R + DFKS
Sbjct: 237 LINE-QQWDQALIFIETKHGAAKLVSQLEKRGIHAEAFHSGRSQAIRAQLLEDFKSGKIK 295
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824
L+AT VAARG+D+ +L V+N+D P ++YVHR+GRTGRA G AI+F+S+++ K
Sbjct: 296 YLVATGVAARGIDIDQLSRVVNYDLPFPADEYVHRIGRTGRAEAVGEAISFVSKDNFK 353
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 572 (206.4 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 133/355 (37%), Positives = 192/355 (54%)
Query: 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532
GL ++ + + + IQA +P +++G+D +G A+TG+GKT AF LP L I
Sbjct: 21 GLPENLLSAVLSIGFTSATDIQALTIPPLLAGKDVLGEAQTGTGKTAAFGLPALAKID-- 78
Query: 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
+ P +++APTREL Q+ I F K M G+R +YGG Q +L+RG
Sbjct: 79 ---TSIKKPQLMVLAPTRELAMQVAEAIESFGKDMKGLRVATLYGGQSYGPQFQQLERGA 135
Query: 592 EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651
++VV TPGR++D L K+ LR V+DEAD M +MGF I I+ +I Q
Sbjct: 136 QVVVGTPGRLMDHLRRKSLKLDELR---VCVLDEADEMLNMGFLEDIQWILDHIPKTAQM 192
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW 711
LFSAT P + +A + L P I+V +ITQ + + LE + E
Sbjct: 193 CLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKANITQYAW-KVSGITKMTALERIAEV 251
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
E ++IFV ++ + L + GYP L+L+G +Q RE I KS ++L+AT
Sbjct: 252 VEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDLNQAQRERCIDQMKSGKSSILVAT 311
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
V ARGLD+ + LVIN+D P E YVHR+GRTGRAGR+G +I F+ + YS
Sbjct: 312 DVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGREGMSIAFVRPREM-YS 365
Score = 48 (22.0 bits), Expect = 1.1e-58, Sum P(2) = 1.1e-58
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845
V+N+D PN + R+ RT R A ++++D ++V+ + +V DL
Sbjct: 377 VLNYDLPNIQDIGKIRIERT----RVEVA-KIVADKDISSMREIVEGMAAESEVSMIDLA 431
Query: 846 ALADSFMAKVNQGLE 860
A A F ++ Q L+
Sbjct: 432 A-ALLFQKQMKQPLQ 445
>UNIPROTKB|Q5T1V6 [details] [associations]
symbol:DDX59 "Probable ATP-dependent RNA helicase DDX59"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0046872
GO:GO:0003723 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 PROSITE:PS51083
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AL136611 EMBL:AL445483 EMBL:BC014183 EMBL:BC041801
IPI:IPI00010449 IPI:IPI00217157 RefSeq:NP_001026895.2
UniGene:Hs.497332 PDB:2YQP PDBsum:2YQP ProteinModelPortal:Q5T1V6
SMR:Q5T1V6 PhosphoSite:Q5T1V6 DMDM:74762230 PaxDb:Q5T1V6
PRIDE:Q5T1V6 DNASU:83479 Ensembl:ENST00000331314
Ensembl:ENST00000447706 GeneID:83479 KEGG:hsa:83479 UCSC:uc009wzk.3
CTD:83479 GeneCards:GC01M200594 HGNC:HGNC:25360 HPA:HPA047166
neXtProt:NX_Q5T1V6 PharmGKB:PA142672000 HOGENOM:HOG000006599
HOVERGEN:HBG106120 InParanoid:Q5T1V6 OMA:VTRPIID PhylomeDB:Q5T1V6
EvolutionaryTrace:Q5T1V6 GenomeRNAi:83479 NextBio:72419
ArrayExpress:Q5T1V6 Bgee:Q5T1V6 CleanEx:HS_DDX59
Genevestigator:Q5T1V6 Uniprot:Q5T1V6
Length = 619
Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
Identities = 140/444 (31%), Positives = 242/444 (54%)
Query: 408 KTKAEKLSIVDHSKIDYQP---FRKNF-YIEVKEIARMTPEEVSAYRKQLELKIHGKDVP 463
K K EK + + K D +P ++ Y E I + +++ ++QL + + G++V
Sbjct: 140 KEKEEKSKLSNPQKADSEPESPLNASYVYKEHPFILNLQEDQIENLKQQLGILVQGQEVT 199
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
+PI + L + ++K YE P PIQ Q +PV + GRD + A TGSGKT AF+L
Sbjct: 200 RPIIDFEHCSLPEVLNHNLKKSGYEVPTPIQMQMIPVGLLGRDILASADTGSGKTAAFLL 259
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQ 582
P++ + P LI+ PTREL QI ++ + ++ V + GG +
Sbjct: 260 PVIMRALFESKT-----PSALILTPTRELAIQIERQAKELMSGLPRMKTVLLVGGLPLPP 314
Query: 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642
Q+ L++ ++++ TPGR++DI+ S ++ ++ V V+DEAD M MGF+ Q+ I+
Sbjct: 315 QLYRLQQHVKVIIATPGRLLDIIKQSSVELCGVKIV---VVDEADTMLKMGFQQQVLDIL 371
Query: 643 QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 702
+NI D QT+L SAT P +E LA ++L+ PV I G +++ ++ Q++ + +
Sbjct: 372 ENIPNDCQTILVSATIPTSIEQLASQLLHNPVRIITGEKNLPCANVRQIILWVEDPAKKK 431
Query: 703 RLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDF 760
+L E+L + K +L+FV + D L + K G +S+H K Q +R++ +
Sbjct: 432 KLFEILNDKKLFKPPVLVFVDCKLGADLLSEAVQKITGLKSISIHSEKSQIERKNILKGL 491
Query: 761 KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820
++++T V RGLD+ + LV+NFD P+ ++YVH++GR GR G+ G AITFI+
Sbjct: 492 LEGDYEVVVSTGVLGRGLDLISVRLVVNFDMPSSMDEYVHQIGRVGRLGQNGTAITFINN 551
Query: 821 EDAKYSPDLVKALELSEQVVPDDL 844
+ D+ K ++ + ++P L
Sbjct: 552 NSKRLFWDIAKRVKPTGSILPPQL 575
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 573 (206.8 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 147/420 (35%), Positives = 222/420 (52%)
Query: 428 RKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNY 487
++ + E E A PE+ + K + G V T+ + L+ ++ L Y
Sbjct: 132 QEEYLSEDDEAAEYKPEDATP--KPFFSTVDG--VSFHADTFMELNLSRPLLRACETLGY 187
Query: 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
+KP PIQA +P+ ++GRD A TGSGKT AF LP L + +P LI+
Sbjct: 188 KKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRV--LILT 245
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
PTREL QIHS I+ A+ ++C + GG V +Q L+ +IVV TPGRMID L
Sbjct: 246 PTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMIDHLRN 305
Query: 608 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667
S +L + L++DEADR+ GF +IT +V+ RQT+LFSAT +V+ L +
Sbjct: 306 SMS--VDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
Query: 668 KVLNKPVEIQVGGRSVVNKDITQ-LVEVRP--ESDRFLRLLELLGEWYEKGKILIFVHSQ 724
LNKP+ + + +T+ +V +R E+++ LL L + K K++IF ++
Sbjct: 364 LSLNKPLRLSADPSARRPPGLTEEVVRIRRTREANQEAVLLSLCTRTF-KSKVIIFSGTK 422
Query: 725 EKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784
+ L G LHG Q R ++ F+ + LIAT VAARGLD+ ++
Sbjct: 423 QAAHRLKILFGLAGLKAAELHGNLTQAQRLDSLELFRKQEVDFLIATDVAARGLDIIGVQ 482
Query: 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL--ELSEQVVPD 842
VIN+ P + YVHRVGRT RAGR+G A+TF+++ D + K + +L +V+P+
Sbjct: 483 TVINYACPREIDSYVHRVGRTARAGREGYAVTFVTDSDRSLLKVIAKKVGSKLKSRVIPE 542
Score = 46 (21.3 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 239 DANVEEPKAGRNWTLDRE--DSDDEEVPQTGKSETDMDA 275
+ EE +AG + + E + DD+E + K + D DA
Sbjct: 31 EGEAEEHEAGEDEDGEEEYEEEDDDEEEEDEKRKRDADA 69
Score = 46 (21.3 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 239 DANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDA 289
D++ E+ K G + E +DE+ G+ E + + D+E + E + DA
Sbjct: 23 DSSEEDVKEGE--AEEHEAGEDED----GEEEYEEEDDDEEEEDEKRKRDA 67
Score = 45 (20.9 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 239 DANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGD 288
DA+ +E + RN +EDS +E+V + E + DE+ + + D
Sbjct: 9 DASDDELELIRN----QEDSSEEDVKEGEAEEHEAGEDEDGEEEYEEEDD 54
Score = 42 (19.8 bits), Expect = 3.8e-58, Sum P(2) = 3.8e-58
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 252 TLDREDSDDEEVPQTGKSETDMDAD---EEPKPSENQVGDA 289
+++ E+ ++EE +ETD + E+ + +E + DA
Sbjct: 110 SINEEEEEEEEEEDASDAETDKQEEYLSEDDEAAEYKPEDA 150
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 552 (199.4 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 132/383 (34%), Positives = 215/383 (56%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+H L+ +++ I + +++P PIQ +PV + G+D A TG+GKT AF+LP+L
Sbjct: 202 TFHDMNLSRPLLKAISTMGFKQPTPIQKACVPVGLLGKDICACAATGTGKTAAFMLPVLE 261
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR-CVPVYGGSGVAQQISE 586
+ +P L++ PTREL Q+H+ R+ A+ + C+ V GG + Q +
Sbjct: 262 RLIYKPRETQVTRV--LVLVPTRELGIQVHTVARQLAQFTTISTCLAV-GGLDLKSQEAA 318
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L+ G ++++ TPGR+ID L + L ++ L++DEADRM D FE Q+ I++
Sbjct: 319 LRAGPDVLIATPGRLIDHLHNTPS--FELSQIEILILDEADRMLDEYFEEQMKEIIRMCA 376
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRP--ESDRFLR 703
RQT+LFSAT +V+ LA L +PV I V + V + Q V +RP E DR
Sbjct: 377 YQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNTDVAPYLRQEFVRIRPNKEGDREAI 436
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
+ LL ++ +++F ++++ + L G LHG QT R ++ FK
Sbjct: 437 VAALLTRTFQD-HVMLFTQTKKQAHRMHILLGLMGLKVGELHGNLSQTQRLESLRRFKDE 495
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
++L+AT VAARGLD++ ++ VINF PN + YVHRVGRT RAG+ G +++ + E +
Sbjct: 496 QIDILVATDVAARGLDIEGVKTVINFTMPNTVKHYVHRVGRTARAGKVGRSVSLVGETER 555
Query: 824 KYSPDLVKALE--LSEQVVPDDL 844
K ++VK + + +V+P ++
Sbjct: 556 KMLKEIVKKAKFPVKARVIPQEV 578
Score = 67 (28.6 bits), Expect = 1.4e-58, Sum P(2) = 1.4e-58
Identities = 32/118 (27%), Positives = 53/118 (44%)
Query: 253 LDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDED 312
L R DDEEVP+ S +D +AD+ P +++ A+ G A G E +
Sbjct: 3 LIRTIDDDEEVPEEPDSGSDDEADQ-PIVLKSKEKQALKARGSGHFNAD-FDFG--ERDG 58
Query: 313 IDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKS 370
+ D M V+ +++K K P+ D +E + RK + +S E K ++ S
Sbjct: 59 LYSADWAMAD-VMAQLKKRK---APTTLD-EKIEKVRKKRKVEEKSQKENKKTETSAS 111
Score = 55 (24.4 bits), Expect = 2.6e-57, Sum P(2) = 2.6e-57
Identities = 20/96 (20%), Positives = 43/96 (44%)
Query: 239 DANVEEPKAGRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGS 298
D +E+ + R ++ + + + +T S+ D +EE + E+ + D+D
Sbjct: 83 DEKIEKVRKKRK--VEEKSQKENKKTETSASKKHDDQEEEEEEEEDDEEEEEDNDADDND 140
Query: 299 AAPALQIGAAEDEDIDPLDAFMNS--MVLPEVEKLK 332
A ++ D+D D D F ++ VL + + L+
Sbjct: 141 AD---EVSGGGDDDDDDEDEFSSADEEVLKKADTLR 173
Score = 53 (23.7 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
Identities = 20/93 (21%), Positives = 37/93 (39%)
Query: 254 DREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDI 313
D ++ ++EE + E D DAD+ + GD D D + +A++E +
Sbjct: 115 DDQEEEEEEEEDDEEEEEDNDADDNDADEVSGGGD----DDDDDED----EFSSADEEVL 166
Query: 314 DPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVE 346
D + K+ +T E F D + +
Sbjct: 167 KKADTLREKQKKGK-RKMADTTEGFFEDASQYD 198
Score = 47 (21.6 bits), Expect = 1.8e-56, Sum P(2) = 1.8e-56
Identities = 15/76 (19%), Positives = 33/76 (43%)
Query: 214 KRRRRVQEWQXXXXXXXXXXXXXXGDANVEEPKAGRNWTLDREDSD--DEEVPQ-TGKSE 270
+++R+V+E D EE + + + ED+D D + + +G +
Sbjct: 90 RKKRKVEEKSQKENKKTETSASKKHDDQEEEEEEEEDDEEEEEDNDADDNDADEVSGGGD 149
Query: 271 TDMDADEEPKPSENQV 286
D D ++E ++ +V
Sbjct: 150 DDDDDEDEFSSADEEV 165
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 136/373 (36%), Positives = 212/373 (56%)
Query: 457 IHGKDVP--KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514
+ ++VP + +++ G+T + E +L ++ P IQ +A+PV + GRD IG+A+TG
Sbjct: 13 LEAEEVPVVEEARSFKDLGVTDVLCEACDQLGWKVPTKIQVEAIPVALQGRDIIGLAETG 72
Query: 515 SGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574
SGKT AF LP+L+ + D P L++ PTREL QI +GV +
Sbjct: 73 SGKTGAFALPILQALLDAPQRL-----FALVLTPTRELAFQISEQFEALGSSIGVHSAVI 127
Query: 575 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF 634
GG Q L + I++ TPGR++D L + G NLR + +LVMDEADR+ +M F
Sbjct: 128 VGGIDSMSQSLALAKKPHIIIATPGRLVDHLENTKG--FNLRALKFLVMDEADRILNMDF 185
Query: 635 EPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEV 694
E ++ +I++ I DR+T LFSAT +QV+ L R L PV+ V + + + Q
Sbjct: 186 ETEVDKILKVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQTVEKLQQYYIF 245
Query: 695 RPESDRFLRLLELLGEWYEKGKILIFV---HSQEKCDALFRDLLKHGYPCLSLHGAKDQT 751
P + L+ +L E +IF ++ ++ L R+L G+ + LHG Q
Sbjct: 246 IPSKFKDSYLVYILNE-LAGNSFMIFCSTCNNTQRTALLLRNL---GFTAIPLHGQMSQN 301
Query: 752 DRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK 811
R +++ FK+ ++L+AT VA+RGLD+ +++VINFD P H +DY+HRVGRT RAGR
Sbjct: 302 KRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRS 361
Query: 812 GCAITFISEEDAK 824
G +ITF+++ D +
Sbjct: 362 GKSITFVTQYDVE 374
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 141/376 (37%), Positives = 217/376 (57%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ GL+S ++E R+L ++P P+Q +P I+ GRDC+G AKTGSGKT AFVLP+L+ +
Sbjct: 6 EIGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR-CVPVYGGSGVAQQISELKR 589
+ P G L++ PTREL QI R K +G++ C+ + GG + Q EL R
Sbjct: 66 EDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCI-IVGGMDMVAQALELSR 119
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQITRIVQNIR 646
+V+ TPGR+ D L +S N++++ +LVMDEADR+ + G F + I+ +
Sbjct: 120 KPHVVIATPGRLADHLRSSN--TFNMKKIQFLVMDEADRLLEQGCTDFTTDLETILAAVP 177
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPV--EIQVGGRSVVNKDITQLVEVRPESDRFL-R 703
RQT+LFSAT ++ L N+P E Q R+V D L+ D +L
Sbjct: 178 ARRQTLLFSATLTDTLKELQGLATNEPFFWEAQATVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L++ + E I+IF ++ + C L L K +P ++LH Q +R + ++ FKS+
Sbjct: 238 LVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+ +LIAT VA+RGLD+ +++VIN + P + Y+HRVGRT RAGR+G AIT +++
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ--- 354
Query: 824 KYSPDLVKALELSEQV 839
Y L+ A+E EQ+
Sbjct: 355 -YDIHLLHAIE--EQI 367
>SGD|S000001107 [details] [associations]
symbol:RRP3 "Protein involved in rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000462 "maturation of
SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA,
LSU-rRNA)" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IC] [GO:0006364 "rRNA processing"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000001107 GO:GO:0005524
GO:GO:0005730 EMBL:BK006934 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:U00061 HOGENOM:HOG000268802
GO:GO:0000462 GeneTree:ENSGT00670000098028 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P EMBL:AY389302 EMBL:AY389303 PIR:S46713
RefSeq:NP_011932.2 ProteinModelPortal:P38712 SMR:P38712
DIP:DIP-6533N IntAct:P38712 MINT:MINT-518716 STRING:P38712
PaxDb:P38712 PeptideAtlas:P38712 EnsemblFungi:YHR065C GeneID:856462
KEGG:sce:YHR065C CYGD:YHR065c NextBio:982111 Genevestigator:P38712
GermOnline:YHR065C Uniprot:P38712
Length = 501
Score = 601 (216.6 bits), Expect = 1.5e-58, P = 1.5e-58
Identities = 140/402 (34%), Positives = 232/402 (57%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
+++ + L ++++ + LNY KP PIQ++A+P + G D IG+A+TGSGKT AF +P+L
Sbjct: 81 ESFSELNLVPELIQACKNLNYSKPTPIQSKAIPPALEGHDIIGLAQTGSGKTAAFAIPIL 140
Query: 527 RHI-KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585
+ DQ P A I+APTREL QQI +MGVR + GG + Q
Sbjct: 141 NRLWHDQEPYYA------CILAPTRELAQQIKETFDSLGSLMGVRSTCIVGGMNMMDQAR 194
Query: 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI 645
+L R I++ TPGR++D L + G +LR++ +LVMDEADR+ DM F P + RI++ I
Sbjct: 195 DLMRKPHIIIATPGRLMDHLENTKG--FSLRKLKFLVMDEADRLLDMEFGPVLDRILKII 252
Query: 646 -RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704
+R T LFSAT +++ L R L PV+ V + + Q + V P + L
Sbjct: 253 PTQERTTYLFSATMTSKIDKLQRASLTNPVKCAVSNKYQTVDTLVQTLMVVPGGLKNTYL 312
Query: 705 LELLGEWYEKGKILIFVHSQEKCDAL--FRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
+ LL E+ K ++IF ++ + L +LL+ + +LHG +Q R ++ FK+
Sbjct: 313 IYLLNEFIGK-TMIIFTRTKANAERLSGLCNLLE--FSATALHGDLNQNQRMGSLDLFKA 369
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
++L+AT VAARGLD+ +++V+N+D P + Y+HRVGRT RAGR G +I+ +S+ D
Sbjct: 370 GKRSILVATDVAARGLDIPSVDIVVNYDIPVDSKSYIHRVGRTARAGRSGKSISLVSQYD 429
Query: 823 AKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHG 864
+ +++ E+ + +P + ++ + + + +++A+G
Sbjct: 430 LEL---ILRIEEVLGKKLPKE--SVDKNIILTLRDSVDKANG 466
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 141/376 (37%), Positives = 217/376 (57%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530
+ GL+S ++E R+L ++P P+Q +P I+ GRDC+G AKTGSGKT AFVLP+L+ +
Sbjct: 6 ELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLS 65
Query: 531 DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR-CVPVYGGSGVAQQISELKR 589
+ P G L++ PTREL QI R K +G++ C+ + GG + Q EL R
Sbjct: 66 EDPY-----GIFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCI-IVGGMDMVAQALELSR 119
Query: 590 GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---FEPQITRIVQNIR 646
+V+ TPGR+ D L +S +++++ +LVMDEADR+ + G F + I+ +
Sbjct: 120 KPHVVIATPGRLADHLRSSN--TFSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVP 177
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPV--EIQVGGRSVVNKDITQLVEVRPESDRFL-R 703
RQT+LFSAT + L N+P E Q R+V D L+ D +L
Sbjct: 178 ARRQTLLFSATLTDTLRELQSLATNQPFFWEAQAPVRTVEQLDQRYLLVPEKVKDAYLVH 237
Query: 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L++ + +E I+IF ++ + C L L K +P ++LH Q +R + ++ FKS+
Sbjct: 238 LIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRKFNFPTVALHSMMKQKERFAALAKFKSS 297
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+ +LIAT VA+RGLD+ +++VIN + P + Y+HRVGRT RAGR+G AIT +++
Sbjct: 298 IYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAITLVTQ--- 354
Query: 824 KYSPDLVKALELSEQV 839
Y LV A+E EQ+
Sbjct: 355 -YDIHLVHAIE--EQI 367
>UNIPROTKB|I3LV06 [details] [associations]
symbol:DDX59 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0005622 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR007529 Pfam:PF04438 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00610000086076
CTD:83479 OMA:VTRPIID EMBL:FP312674 RefSeq:XP_003357711.1
Ensembl:ENSSSCT00000031167 GeneID:100621580 KEGG:ssc:100621580
Uniprot:I3LV06
Length = 607
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 138/419 (32%), Positives = 231/419 (55%)
Query: 432 YIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPM 491
Y E I+ + +++ R QL + + G+ VP+PI + G + ++ YE P
Sbjct: 156 YTEHAFISNLREDQIENLRGQLGIVVEGRGVPRPIIDFGHCGFPETLNFNLKTAGYEVPT 215
Query: 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551
PIQ Q +PV + GRD + A TGSGKT AF+LP++ Q P L++ PTRE
Sbjct: 216 PIQMQMIPVGLLGRDLLASADTGSGKTAAFLLPVITRALVQ-----SKAPSALVLTPTRE 270
Query: 552 LVQQIHSDIRKFAKVMG----VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
L QI R+ ++MG +R + GG Q+ L++ ++++ TPGR++DI+
Sbjct: 271 LAIQIE---RQAKELMGGLPRMRTALLVGGLPAPPQLHRLRQRVQVIIATPGRLLDIMKQ 327
Query: 608 SGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667
S + N++ V V+DEAD M MGF+ Q+ +++N+ D QT+L SAT P ++E LA
Sbjct: 328 SSVDLGNIKIV---VVDEADTMLKMGFQEQVLDVLENVPQDCQTILVSATIPTRIEQLAS 384
Query: 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW-YEKGKILIFVHSQEK 726
++L+ PV + G +++ + Q+V E + +L E+L + K +L+FV +
Sbjct: 385 RLLHDPVRVLAGEKNLPCPSVRQIVLWVEEPAKKKKLFEILNDKKLFKPPVLVFVDCKLG 444
Query: 727 CDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785
D L + K G S+H K Q +R++ + +++++T V RGLD+ ++L
Sbjct: 445 ADLLSEAVEKITGLKSTSMHSEKSQIERKTILEGLLEGDYDVVVSTGVLGRGLDLISVKL 504
Query: 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844
V+NFD P+ ++YVH+VGR GR G+ G AITFI+ + D+ K ++ + ++P L
Sbjct: 505 VVNFDMPSSMDEYVHQVGRVGRLGQNGTAITFINNNSKRLFWDIAKRVKPTGSLLPPQL 563
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 133/379 (35%), Positives = 213/379 (56%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ L+S +M+ I ++ +E+ PIQAQ +P+ +S +D IG A+TG+GKT AF +P++
Sbjct: 4 TFQDFNLSSDLMKAINRMGFEEATPIQAQTIPLGLSNKDVIGQAQTGTGKTAAFGIPLVE 63
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
I + P +++APTREL Q+ ++ K + + +P+YGG + +QI L
Sbjct: 64 KINPESPNIQA-----IVIAPTRELAIQVSEELYKIGQDKRAKVLPIYGGQDIGRQIRAL 118
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
K+ I+V TPGR++D + + L V +VMDEAD M +MGF I I+ N+
Sbjct: 119 KKNPNIIVGTPGRLLDHI---NRRTIRLNNVNTVVMDEADEMLNMGFIDDIESILSNVPS 175
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 706
+ QT+LFSAT P ++ +A + + +P ++V + + +I Q +EV+ E +F L
Sbjct: 176 EHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAKEMTVSNIQQFYLEVQ-ERKKFDTLTR 234
Query: 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766
LL + ++F ++ + D L L GY +HG Q R + FK
Sbjct: 235 LL-DIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQAKRMVALRKFKEGAIE 293
Query: 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826
+L+AT VAARGLD+ + V NFD P E YVHR+GRTGRAG+ G A+TFI+ +
Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKTGMAMTFITPREKS-- 351
Query: 827 PDLVKALELSEQVVPDDLK 845
+++A+E + + D +K
Sbjct: 352 --MLRAIEQTTKRKMDRMK 368
WARNING: HSPs involving 792 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 976 730 0.00086 121 3 11 22 0.43 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1042
No. of states in DFA: 618 (66 KB)
Total size of DFA: 349 KB (2175 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 68.51u 0.13s 68.64t Elapsed: 00:00:03
Total cpu time: 68.58u 0.13s 68.71t Elapsed: 00:00:03
Start: Fri May 10 06:55:10 2013 End: Fri May 10 06:55:13 2013
WARNINGS ISSUED: 2