BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002040
(976 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 303 bits (775), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 171/408 (41%), Positives = 246/408 (60%), Gaps = 22/408 (5%)
Query: 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKT 518
G + P I+++ + IM I Y +P P+Q A+P+I RD + A+TGSGKT
Sbjct: 7 GNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKT 66
Query: 519 LAFVLPMLRHIKDQPPVAAGDG-------------PVGLIMAPTRELVQQIHSDIRKFAK 565
AF+LP+L I P A P+ L++APTREL QI+ + RKF+
Sbjct: 67 AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSY 126
Query: 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625
VR VYGG+ + QQI +L+RG ++V TPGR++D++ GKI L YLV+DE
Sbjct: 127 RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMM--ERGKI-GLDFCKYLVLDE 183
Query: 626 ADRMFDMGFEPQITRIV-QNIRPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681
ADRM DMGFEPQI RIV Q+ P R T++FSATFP+++++LAR L++ + + VG
Sbjct: 184 ADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRV 243
Query: 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYP 740
+++ITQ V ESD+ LL+LL + L+FV +++ D+L D L H GY
Sbjct: 244 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGYA 302
Query: 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800
C S+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YVH
Sbjct: 303 CTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVH 362
Query: 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
R+GRTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 363 RIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 410
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 279 bits (714), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 158/399 (39%), Positives = 240/399 (60%), Gaps = 10/399 (2%)
Query: 452 QLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVA 511
+ +K+ G DVP+PI+ + L I++ + K Y+ P PIQ ++PVI SGRD + A
Sbjct: 41 NIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACA 100
Query: 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571
+TGSGKT AF+LP+L + + P P +I++PTREL QI ++ RKFA ++
Sbjct: 101 QTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKI 160
Query: 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631
VYGG+ Q + RG +V+ TPGR++D + + + R ++V+DEADRM D
Sbjct: 161 GIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTR---FVVLDEADRMLD 217
Query: 632 MGFEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIT 689
MGF + RI+ ++ RP+ QT++FSATFP +++ +A + L V + +G D+
Sbjct: 218 MGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVK 277
Query: 690 QLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAK 748
Q + EV + R +L+E+L E + ++FV ++ D L L + +P S+HG +
Sbjct: 278 QTIYEVNKYAKR-SKLIEILSE--QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDR 334
Query: 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808
Q+ RE + DFK+ +LIATSVA+RGLD+K ++ VIN+D P+ +DYVHR+GRTGR
Sbjct: 335 LQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRV 394
Query: 809 GRKGCAITFIS-EEDAKYSPDLVKALELSEQVVPDDLKA 846
G G A +F E+D + DLVK LE S Q VPD L+
Sbjct: 395 GNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 254 bits (649), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/254 (47%), Positives = 171/254 (67%), Gaps = 3/254 (1%)
Query: 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486
F KNFY E ++AR T +EV YR+ E+ + G + PKP+ +++ + +M+ I + N
Sbjct: 3 FEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQN 62
Query: 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546
+ +P IQAQ PV +SG D +GVA+TGSGKTL+++LP + HI QP + GDGP+ L++
Sbjct: 63 FTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVL 122
Query: 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILC 606
APTREL QQ+ ++ + ++ +YGG+ QI +L+RG EI + TPGR+ID L
Sbjct: 123 APTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL- 181
Query: 607 TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILA 666
GK TNLRR TYLV+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V LA
Sbjct: 182 -ECGK-TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLA 239
Query: 667 RKVLNKPVEIQVGG 680
L + I +G
Sbjct: 240 EDFLKDYIHINIGA 253
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 238 bits (608), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 161/239 (67%), Gaps = 3/239 (1%)
Query: 442 TPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI 501
T +EV YR+ E+ + G + PKP+ +++ + +M+ I + N+ +P IQAQ PV
Sbjct: 4 TAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVA 63
Query: 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561
+SG D +GVA+TGSGKTL+++LP + HI QP + GDGP+ L++APTREL QQ+
Sbjct: 64 LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAA 123
Query: 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621
++ + ++ +YGG+ QI +L+RG EI + TPGR+ID L GK TNLRR TYL
Sbjct: 124 EYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL--ECGK-TNLRRTTYL 180
Query: 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680
V+DEADRM DMGFEPQI +IV IRPDRQT+++SAT+P++V LA L + I +G
Sbjct: 181 VLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 16/366 (4%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ GL ++ I +EKP IQ +A+ I+ GRD I +++G+GKT F + +L+
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ Q LI+APTREL QI + M V+C GG+ V + I +L
Sbjct: 99 CLDIQVRETQA-----LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 153
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +V TPGR+ D++ + R + LV+DEAD M + GF+ QI + + + P
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 210
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 706
Q VL SAT P ++ + K + P+ I V + + I Q V V E +F L +
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270
Query: 707 LLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L Y+ I +IF +++ K D L + + + S+HG Q +RES + +F+S
Sbjct: 271 L----YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 326
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR+GR GRKG AI F+ +D
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Query: 824 KYSPDL 829
+ D+
Sbjct: 387 RILRDI 392
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 216 bits (549), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 16/366 (4%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ GL ++ I +EKP IQ +A+ I+ GRD I +++G+GKT F + +L+
Sbjct: 38 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 97
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ Q LI+APTREL QI + M V+C GG+ V + I +L
Sbjct: 98 CLDIQVRETQA-----LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 152
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +V TPGR+ D++ + R + LV+DEAD M + GF+ QI + + + P
Sbjct: 153 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 209
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 706
Q VL SAT P ++ + K + P+ I V + + I Q V V E +F L +
Sbjct: 210 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 269
Query: 707 LLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L Y+ I +IF +++ K D L + + + S+HG Q +RES + +F+S
Sbjct: 270 L----YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 325
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR+GR GRKG AI F+ +D
Sbjct: 326 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 385
Query: 824 KYSPDL 829
+ D+
Sbjct: 386 RILRDI 391
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 216 bits (549), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 16/366 (4%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ GL ++ I +EKP IQ +A+ I+ GRD I +++G+GKT F + +L+
Sbjct: 39 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 98
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ Q LI+APTREL QI + M V+C GG+ V + I +L
Sbjct: 99 CLDIQVRETQA-----LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 153
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +V TPGR+ D++ + R + LV+DEAD M + GF+ QI + + + P
Sbjct: 154 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 210
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 706
Q VL SAT P ++ + K + P+ I V + + I Q V V E +F L +
Sbjct: 211 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 270
Query: 707 LLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L Y+ I +IF +++ K D L + + + S+HG Q +RES + +F+S
Sbjct: 271 L----YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 326
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR+GR GRKG AI F+ +D
Sbjct: 327 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 386
Query: 824 KYSPDL 829
+ D+
Sbjct: 387 RILRDI 392
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 215 bits (547), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 128/366 (34%), Positives = 197/366 (53%), Gaps = 16/366 (4%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ GL ++ I +EKP IQ +A+ I+ GRD I +++G+GKT F + +L+
Sbjct: 17 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQ 76
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ Q LI+APTREL QI + M V+C GG+ V + I +L
Sbjct: 77 CLDIQVRETQA-----LILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 131
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +V TPGR+ D++ + R + LV+DEAD M + GF+ QI + + + P
Sbjct: 132 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 188
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 706
Q VL SAT P ++ + K + P+ I V + + I Q V V E +F L +
Sbjct: 189 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 248
Query: 707 LLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L Y+ I +IF +++ K D L + + + S+HG Q +RES + +F+S
Sbjct: 249 L----YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 304
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR+GR GRKG AI F+ +D
Sbjct: 305 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDI 364
Query: 824 KYSPDL 829
+ D+
Sbjct: 365 RILRDI 370
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 213 bits (542), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 197/366 (53%), Gaps = 16/366 (4%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ GL ++ I +EKP IQ +A+ I+ GRD I +++G+GKT F + +L+
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ Q LI+APTREL Q+ + M V+C GG+ V + I +L
Sbjct: 62 CLDIQVRETQA-----LILAPTRELAVQVQKGLLALGDYMNVQCHACIGGTNVGEDIRKL 116
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +V TPGR+ D++ + R + LV+DEAD M + GF+ QI + + + P
Sbjct: 117 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 173
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 706
Q VL SAT P ++ + K + P+ I V + + I Q V V E +F L +
Sbjct: 174 ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 233
Query: 707 LLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L Y+ I +IF +++ K D L + + + S+HG Q +RES + +F+S
Sbjct: 234 L----YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 289
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR+GR GRKG A+ F+ +D
Sbjct: 290 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDI 349
Query: 824 KYSPDL 829
+ D+
Sbjct: 350 RVLRDI 355
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/355 (34%), Positives = 186/355 (52%), Gaps = 10/355 (2%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ L +++ I + +EKP PIQ +A+PV ++GRD + AK G+GKT AFV+P L
Sbjct: 22 TFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLE 81
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+K + + LIM PTREL Q +R K G+ C+ GG+ + I L
Sbjct: 82 KVKPKL-----NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL 136
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
I+V TPGR++D+ + K+ +L + +MDEAD+M F+ I +I+ + P
Sbjct: 137 NETVHILVGTPGRVLDL---ASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPP 193
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707
Q++LFSATFP V+ K L+KP EI + + K ITQ E + L L
Sbjct: 194 THQSLLFSATFPLTVKEFMVKHLHKPYEINLM-EELTLKGITQYYAFVEERQK-LHCLNT 251
Query: 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNL 767
L + + +IF +S + + L + + GY C H Q +R +F+
Sbjct: 252 LFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRT 311
Query: 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
L+ + + RG+D++ + +VINFD P E Y+HR+GR+GR G G AI I+ D
Sbjct: 312 LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWND 366
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 196/366 (53%), Gaps = 16/366 (4%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLR 527
T+ GL ++ I +EKP IQ +A+ I+ GRD I +++G+GKT F + +L+
Sbjct: 2 TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQ 61
Query: 528 HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587
+ Q LI+APTREL Q+ + M V+ GG+ V + I +L
Sbjct: 62 CLDIQVRETQA-----LILAPTRELAVQVQKGLLALGDYMNVQSHACIGGTNVGEDIRKL 116
Query: 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647
G +V TPGR+ D++ + R + LV+DEAD M + GF+ QI + + + P
Sbjct: 117 DYGQHVVAGTPGRVFDMIRRRSLRT---RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 173
Query: 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLE 706
Q VL SAT P +V + K + P+ I V + + I Q V V E +F L +
Sbjct: 174 ATQVVLISATLPHEVLEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCD 233
Query: 707 LLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
L Y+ I +IF +++ K D L + + + S+HG Q +RES + +F+S
Sbjct: 234 L----YDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG 289
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LI+T V ARGLDV ++ L+IN+D PN+ E Y+HR+GR+GR GRKG A+ F+ +D
Sbjct: 290 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAVNFVKNDDI 349
Query: 824 KYSPDL 829
+ D+
Sbjct: 350 RVLRDI 355
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 202 bits (515), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 194/361 (53%), Gaps = 23/361 (6%)
Query: 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPML 526
+++ L+ I+ IR +EKP IQ + +P+ ++ + + A+TGSGKT +F +P++
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQXKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + + A +I+ PTREL Q+ +I ++ +YGG + QI
Sbjct: 67 ELVNENNGIEA------IILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 120
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
LK IVV TPGR++D + NL+ V Y ++DEAD + GF + +I+
Sbjct: 121 LKNAN-IVVGTPGRILDHINRG---TLNLKNVKYFILDEADEXLNXGFIKDVEKILNACN 176
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRPESDRFLRLL 705
D++ +LFSAT PR++ LA+K I ++ +N +I Q VEV E++RF L
Sbjct: 177 KDKRILLFSATXPREILNLAKKYXGDYSFI----KAKINANIEQSYVEVN-ENERFEALC 231
Query: 706 ELLG--EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN 763
LL E+Y L+F ++ L L G+ ++HG Q+ RE I FK
Sbjct: 232 RLLKNKEFYG----LVFCKTKRDTKELASXLRDIGFKAGAIHGDLSQSQREKVIRLFKQK 287
Query: 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823
+LIAT V +RG+DV +L VIN+ P + E Y HR+GRTGRAG+KG AI+ I+ +
Sbjct: 288 KIRILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKGKAISIINRREY 347
Query: 824 K 824
K
Sbjct: 348 K 348
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 191 bits (485), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 194/350 (55%), Gaps = 29/350 (8%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
+ KI + IR++ ++ +Q++ +P+++ G++ + AKTGSGKT A+ +P+L
Sbjct: 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL----- 55
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
G L++ PTREL +Q+ S IR + M + VYGG QI+ + R +I
Sbjct: 56 ------GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV-RNADI 108
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
VV TPGR++D L + G + +L +++DEAD MF+MGF I I+ + T L
Sbjct: 109 VVATPGRLLD-LWSKG--VIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGL 165
Query: 654 FSATFPRQVEILARKVLNKPVEIQ--VGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW 711
FSAT P ++ + + + EI+ +G +V +K V V+ D + ++ L E
Sbjct: 166 FSATIPEEIRKVVKDFITNYEEIEACIGLANVEHK----FVHVK---DDWRSKVQALREN 218
Query: 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771
+KG +++FV ++ + L R L + + L G Q+ R I F+ ++LI T
Sbjct: 219 KDKG-VIVFVRTRNRVAKLVR-LFDN---AIELRGDLPQSVRNRNIDAFREGEYDMLITT 273
Query: 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821
VA+RGLD+ +E VINFDAP Y+HR+GRTGR GRKG AITFI E
Sbjct: 274 DVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNE 323
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 205/387 (52%), Gaps = 14/387 (3%)
Query: 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522
P + + L +++ I +E P +Q + +P + G D + AK+G GKT FV
Sbjct: 3 PGHMSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFV 62
Query: 523 LPMLRHIKDQPPVAAGDGPVG-LIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGV 580
L L+ ++ PV G V L+M TREL QI + +F+K M V+ +GG +
Sbjct: 63 LATLQQLE---PVT---GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSI 116
Query: 581 AQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQI 638
+ LK+ IVV TPGR IL + K NL+ + + ++DEAD+M + + +
Sbjct: 117 KKDEEVLKKNCPHIVVGTPGR---ILALARNKSLNLKHIKHFILDEADKMLEQLDMRRDV 173
Query: 639 TRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES 698
I + ++Q ++FSAT +++ + RK + P+EI V + + Q V+ +
Sbjct: 174 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 233
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
+ R L L + E +++IFV S ++C AL + L++ +P +++H Q +R S
Sbjct: 234 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 293
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818
FK +L+AT++ RG+D++ + + N+D P + Y+HRV R GR G KG AITF+
Sbjct: 294 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 353
Query: 819 SEE-DAKYSPDLVKALELSEQVVPDDL 844
S+E DAK D+ E++ +PD++
Sbjct: 354 SDENDAKILNDVQDRFEVNISELPDEI 380
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 201/376 (53%), Gaps = 14/376 (3%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L +++ I +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 15 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE--- 71
Query: 534 PVAAGDGPVG-LIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
PV G V L+M TREL QI + +F+K M V+ +GG + + LK+
Sbjct: 72 PVT---GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC 128
Query: 592 -EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDR 649
IVV TPGR IL + K NL+ + + ++DE D+M + + + I + ++
Sbjct: 129 PHIVVGTPGR---ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 185
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
Q ++FSAT +++ + RK + P+EI V + + Q V+ + + R L L
Sbjct: 186 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E +++IFV S ++C AL + L++ +P +++H Q +R S FK +L+
Sbjct: 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 305
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPD 828
AT++ RG+D++ + + N+D P + Y+HRV R GR G KG AITF+S+E DAK D
Sbjct: 306 ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILND 365
Query: 829 LVKALELSEQVVPDDL 844
+ E++ +PD++
Sbjct: 366 VQDRFEVNISELPDEI 381
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 184 bits (467), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 201/376 (53%), Gaps = 14/376 (3%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L +++ I +E P +Q + +P + G D + AK+G GKT FVL L+ ++
Sbjct: 15 LKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLE--- 71
Query: 534 PVAAGDGPVG-LIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGT 591
PV G V L+M TREL QI + +F+K M V+ +GG + + LK+
Sbjct: 72 PVT---GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNC 128
Query: 592 -EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDR 649
IVV TPGR IL + K NL+ + + ++DE D+M + + + I + ++
Sbjct: 129 PHIVVGTPGR---ILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK 185
Query: 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709
Q ++FSAT +++ + RK + P+EI V + + Q V+ + + R L L
Sbjct: 186 QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245
Query: 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769
+ E +++IFV S ++C AL + L++ +P +++H Q +R S FK +L+
Sbjct: 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 305
Query: 770 ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPD 828
AT++ RG+D++ + + N+D P + Y+HRV R GR G KG AITF+S+E DAK D
Sbjct: 306 ATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILND 365
Query: 829 LVKALELSEQVVPDDL 844
+ E++ +PD++
Sbjct: 366 VQDRFEVNISELPDEI 381
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 198/370 (53%), Gaps = 19/370 (5%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+ ++ L+ ++ I +EKP IQ +A+ + G D I A++G+GKT F + +
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 526 LRHIK-DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584
L+ I+ D A L++APTREL QQI + MG C GG+ V ++
Sbjct: 99 LQQIELDLKATQA------LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV 152
Query: 585 SELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+L+ I+V TPGR+ D+L + + + + V+DEAD M GF+ QI I Q
Sbjct: 153 QKLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFL 702
+ + Q VL SAT P V + +K + P+ I V + + I Q + V E +
Sbjct: 210 KLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK-- 267
Query: 703 RLLELLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759
L+ L + YE I +IF++++ K D L + + ++HG DQ +R+ + +
Sbjct: 268 --LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMRE 325
Query: 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819
F+S +LI T + ARG+DV+++ LVIN+D P + E+Y+HR+GR GR GRKG AI ++
Sbjct: 326 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 385
Query: 820 EEDAKYSPDL 829
EED + D+
Sbjct: 386 EEDKRTLRDI 395
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 182 bits (462), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 198/370 (53%), Gaps = 19/370 (5%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+ ++ L+ ++ I +EKP IQ +A+ + G D I A++G+GKT F + +
Sbjct: 13 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 72
Query: 526 LRHIK-DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584
L+ I+ D A L++APTREL QQI + MG C GG+ V ++
Sbjct: 73 LQQIELDLKATQA------LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEV 126
Query: 585 SELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
+L+ I+V TPGR+ D+L + + + + V+DEAD M GF+ QI I Q
Sbjct: 127 QKLQMEAPHIIVGTPGRVFDML---NRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 183
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFL 702
+ + Q VL SAT P V + +K + P+ I V + + I Q + V E +
Sbjct: 184 KLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWK-- 241
Query: 703 RLLELLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759
L+ L + YE I +IF++++ K D L + + ++HG DQ +R+ + +
Sbjct: 242 --LDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMRE 299
Query: 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819
F+S +LI T + ARG+DV+++ LVIN+D P + E+Y+HR+GR GR GRKG AI ++
Sbjct: 300 FRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVT 359
Query: 820 EEDAKYSPDL 829
EED + D+
Sbjct: 360 EEDKRTLRDI 369
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 121/370 (32%), Positives = 204/370 (55%), Gaps = 29/370 (7%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLP 524
K++ + GL ++++ I + ++KP IQ +ALP+++ R+ I +++G+GKT AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 525 MLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ---IHSDIRKFAKVMGVRCVPVYGGSGVA 581
ML + P A+ P + +AP+REL +Q + ++ KF K+ VP
Sbjct: 65 MLTRV--NPEDAS---PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKN 117
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITR 640
+QI+ +++V TPG ++D++ K+ L+++ V+DEAD M D G Q R
Sbjct: 118 KQIN-----AQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 169
Query: 641 IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESD 699
+ + + D Q VLFSATF V A+K++ +++ V I QL ++ + E+D
Sbjct: 170 VKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEAD 229
Query: 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759
+F L EL G G +IFV +++ + L+ L G+ LHG +R+ I D
Sbjct: 230 KFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDD 288
Query: 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAP---NHYED---YVHRVGRTGRAGRKGC 813
F+ +LI T+V ARG+D+ + +V+N+D P N D Y+HR+GRTGR GRKG
Sbjct: 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348
Query: 814 AITFISEEDA 823
AI+F+ ++++
Sbjct: 349 AISFVHDKNS 358
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 180 bits (456), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 202/370 (54%), Gaps = 29/370 (7%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLP 524
K++ + GL ++++ I + ++KP IQ +ALP+++ R+ I +++G+GKT AF L
Sbjct: 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 64
Query: 525 MLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ---IHSDIRKFAKVMGVRCVPVYGGSGVA 581
ML + + P + +AP+REL +Q + ++ KF K+ VP
Sbjct: 65 MLTRVNPEDA-----SPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKN 117
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITR 640
+QI+ +++V TPG ++D++ K+ L+++ V+DEAD M D G Q R
Sbjct: 118 KQIN-----AQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 169
Query: 641 IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPESD 699
+ + + D Q VLFSATF V A+K++ +++ V I QL ++ + E+D
Sbjct: 170 VKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEAD 229
Query: 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISD 759
+F L EL G G +IFV +++ + L+ L G+ LHG +R+ I D
Sbjct: 230 KFDVLTELYG-VMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDD 288
Query: 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAP---NHYED---YVHRVGRTGRAGRKGC 813
F+ +LI T+V ARG+D+ + +V+N+D P N D Y+HR+GRTGR GRKG
Sbjct: 289 FREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348
Query: 814 AITFISEEDA 823
AI+F+ ++++
Sbjct: 349 AISFVHDKNS 358
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 84/202 (41%), Positives = 132/202 (65%), Gaps = 5/202 (2%)
Query: 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP-PVA 536
++++I ++ KP PIQ+QA P+I+ G D I VA+TG+GKTL++++P H+ QP
Sbjct: 31 LLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVC 596
+GP L++ PTREL + ++ K++ G++ + +YGG QI ++ +G +I++
Sbjct: 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIA 149
Query: 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656
TPGR+ D+ + NLR +TYLV+DEAD+M DM FEPQI +I+ ++RPDRQTV+ SA
Sbjct: 150 TPGRLNDLQMNNS---VNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSA 206
Query: 657 TFPRQVEILARKVLNKPVEIQV 678
T+P V LA L P+ + V
Sbjct: 207 TWPDTVRQLALSYLKDPMIVYV 228
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/222 (40%), Positives = 134/222 (60%), Gaps = 11/222 (4%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
I+ + + L I I +Y++P PIQ A+P I+ RD + A+TGSGKT AF++P+
Sbjct: 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPI 81
Query: 526 LRHIK----DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581
+ H+ +Q + P LI+APTREL QI S+ +KF+ +R VYGG+
Sbjct: 82 INHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTH 141
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
QI E++ G ++V TPGR++D + KI+ L Y+V+DEADRM DMGFEPQI +I
Sbjct: 142 SQIREVQMGCHLLVATPGRLVDFI--EKNKIS-LEFCKYIVLDEADRMLDMGFEPQIRKI 198
Query: 642 VQNIRP----DRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679
++ +RQT++FSATFP++++ LA L + + VG
Sbjct: 199 IEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 240
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 121/397 (30%), Positives = 199/397 (50%), Gaps = 31/397 (7%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
K + + L ++ + +E+P IQ +A+ I+ G D + A++G+GKT F +
Sbjct: 19 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 78
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
L+ I + P L++APTREL QI + A M ++ GG+ +
Sbjct: 79 AALQRID-----TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 133
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR-------VTYLVMDEADRMFDMGFEP 636
+E R +IVV TPGR+ D N++R + ++DEAD M GF+
Sbjct: 134 -AEGLRDAQIVVGTPGRVFD----------NIQRRRFRTDKIKMFILDEADEMLSSGFKE 182
Query: 637 QITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVR 695
QI +I + P Q VL SAT P V + K + PV I V + + I Q V V
Sbjct: 183 QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVE 242
Query: 696 PESDRFLRLLELLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
E ++ E L + Y+ + +IF +++ K + L L + +++ Q +
Sbjct: 243 EEEYKY----ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 298
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
R++ + +F+S +LI+T + ARG+DV+++ LVIN+D P + E+Y+HR+GR GR GRKG
Sbjct: 299 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 358
Query: 813 CAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849
AI F++ ED +L K + +P D+ L +
Sbjct: 359 VAINFVTNEDVGAMRELEKFYSTQIEELPSDIATLLN 395
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 158 bits (399), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 205/404 (50%), Gaps = 55/404 (13%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKD 531
L +I + I ++ + P+Q + + I+S D I AKTG+GKT AF++P+ +H+ +
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 532 -----QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV-MGVR---CVPVYGGSGVAQ 582
Q V A +I+APTR+L QI ++++K + G++ CV + GG+
Sbjct: 88 TKFDSQYMVKA------VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141
Query: 583 QISEL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
++++ K IV+ TPGR+ID+L K R V Y V+DEADR+ ++GF + I
Sbjct: 142 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF--FRFVDYKVLDEADRLLEIGFRDDLETI 199
Query: 642 --VQNIRPDR-----QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD------- 687
+ N + + +T+LFSAT +V+ LA ++NK + V+K+
Sbjct: 200 SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK---ECLFLDTVDKNEPEAHER 256
Query: 688 ITQLVEVRPESDRFLRLLELLGEWYEKG--------KILIF---VHSQEKCDALFRDLLK 736
I Q V + S++F + E +K K +IF V ++ ++ K
Sbjct: 257 IDQSVVI---SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK 313
Query: 737 HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796
P L HG Q R S + FK + +L+ T V ARG+D + V+ P+
Sbjct: 314 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 373
Query: 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
+Y+HR+GRT R+G++G ++ FI +++ + V+ LE ++ +V
Sbjct: 374 NYIHRIGRTARSGKEGSSVLFICKDELPF----VRELEDAKNIV 413
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 156 bits (394), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 205/404 (50%), Gaps = 55/404 (13%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKD 531
L +I + I ++ + P+Q + + I+S D I AKTG+GKT AF++P+ +H+ +
Sbjct: 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 138
Query: 532 -----QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV-MGVR---CVPVYGGSGVAQ 582
Q V A +I+APTR+L QI ++++K + G++ CV + GG+
Sbjct: 139 TKFDSQYMVKA------VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 192
Query: 583 QISEL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
++++ K IV+ TPGR+ID+L K R V Y V+DEADR+ ++GF + I
Sbjct: 193 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF--FRFVDYKVLDEADRLLEIGFRDDLETI 250
Query: 642 --VQNIRPDR-----QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD------- 687
+ N + + +T+LFSAT +V+ LA ++NK + V+K+
Sbjct: 251 SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK---ECLFLDTVDKNEPEAHER 307
Query: 688 ITQLVEVRPESDRFLRLLELLGEWYEKG--------KILIF---VHSQEKCDALFRDLLK 736
I Q V + S++F + E +K K +IF V ++ ++ K
Sbjct: 308 IDQSVVI---SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK 364
Query: 737 HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796
P L HG Q R S + FK + +L+ T V ARG+D + V+ P+
Sbjct: 365 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 424
Query: 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
+Y+HR+GRT R+G++G ++ FI +++ + V+ LE ++ +V
Sbjct: 425 NYIHRIGRTARSGKEGSSVLFICKDELPF----VRELEDAKNIV 464
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 155 bits (392), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/404 (29%), Positives = 205/404 (50%), Gaps = 55/404 (13%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKD 531
L +I + I ++ + P+Q + + I+S D I AKTG+GKT AF++P+ +H+ +
Sbjct: 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLIN 87
Query: 532 -----QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV-MGVR---CVPVYGGSGVAQ 582
Q V A +I+APTR+L QI ++++K + G++ CV + GG+
Sbjct: 88 TKFDSQYMVKA------VIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA 141
Query: 583 QISEL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641
++++ K IV+ TPGR+ID+L K R V Y V+DEADR+ ++GF + I
Sbjct: 142 AMNKMNKLRPNIVIATPGRLIDVLEKYSNKF--FRFVDYKVLDEADRLLEIGFRDDLETI 199
Query: 642 --VQNIRPDR-----QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD------- 687
+ N + + +T+LFSAT +V+ LA ++NK + V+K+
Sbjct: 200 SGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKK---ECLFLDTVDKNEPEAHER 256
Query: 688 ITQLVEVRPESDRFLRLLELLGEWYEKG--------KILIF---VHSQEKCDALFRDLLK 736
I Q V + S++F + E +K K +IF V ++ ++ K
Sbjct: 257 IDQSVVI---SEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK 313
Query: 737 HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE 796
P L HG Q R S + FK + +L+ T V ARG+D + V+ P+
Sbjct: 314 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 373
Query: 797 DYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
+Y+HR+GRT R+G++G ++ FI +++ + V+ LE ++ +V
Sbjct: 374 NYIHRIGRTARSGKEGSSVLFICKDELPF----VRELEDAKNIV 413
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 122/212 (57%), Gaps = 7/212 (3%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPML 526
KT+ G+T + E +L + KP IQ +A+P+ + GRD IG+A+TGSGKT AF LP+L
Sbjct: 43 KTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL 102
Query: 527 RHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586
+ + P L++ PTREL QI +GV+ + GG Q
Sbjct: 103 NALLETP-----QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLA 157
Query: 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646
L + I++ TPGR+ID L + G NLR + YLVMDEADR+ +M FE ++ +I++ I
Sbjct: 158 LAKKPHIIIATPGRLIDHLENTKG--FNLRALKYLVMDEADRILNMDFETEVDKILKVIP 215
Query: 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
DR+T LFSAT ++V+ L R L PV+ V
Sbjct: 216 RDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 105/340 (30%), Positives = 177/340 (52%), Gaps = 25/340 (7%)
Query: 493 IQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550
IQ +ALP+++S R+ IG +++G+GKT AF L ML + P P + +AP+R
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVP-----KPQAICLAPSR 199
Query: 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE-LKRGTEIVVCTPGRMIDILCTSG 609
EL +QI + + K V+ G+ + + K +IV+ TPG ++D++
Sbjct: 200 ELARQIMDVVTEMGKYTEVKT-----AFGIKDSVPKGAKIDAQIVIGTPGTVMDLM---K 251
Query: 610 GKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARK 668
+ + R + V+DEAD M D G Q RI + + Q VLFSATF +VE A +
Sbjct: 252 RRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAER 311
Query: 669 VLNKPVEIQVGGRSVVNKDITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKC 727
EI++ + + I QL ++ + E ++ L+EL G G+ +IF ++
Sbjct: 312 FAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYG-LLTIGQSIIFCKKKDTA 370
Query: 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787
+ + R + G+ L G + R++ + F+ +L+ T+V ARG+DV ++ LV+
Sbjct: 371 EEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430
Query: 788 NFDAPNHY------EDYVHRVGRTGRAGRKGCAITFISEE 821
N+D P + Y+HR+GRTGR GR G +I F+ ++
Sbjct: 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDK 470
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 119/397 (29%), Positives = 194/397 (48%), Gaps = 31/397 (7%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
K + + L ++ + +E+P IQ +A+ I+ G D + A++G+GKT F +
Sbjct: 18 KVVYKFDDXELDENLLRGVFGYGFEEPSAIQQRAIXPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
L+ I + P L +APTREL QI + A ++ GG+ +
Sbjct: 78 AALQRID-----TSVKAPQALXLAPTRELALQIQKVVXALAFHXDIKVHACIGGTSFVED 132
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR-------VTYLVMDEADRMFDMGFEP 636
+E R +IVV TPGR+ D N++R + ++DEAD GF+
Sbjct: 133 -AEGLRDAQIVVGTPGRVFD----------NIQRRRFRTDKIKXFILDEADEXLSSGFKE 181
Query: 637 QITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVR 695
QI +I + P Q VL SAT P V + K PV I V + + I Q V V
Sbjct: 182 QIYQIFTLLPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKDELTLEGIKQFYVNVE 241
Query: 696 PESDRFLRLLELLGEWYEKGKI---LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
E ++ E L + Y+ + +IF +++ K + L L + +++ Q +
Sbjct: 242 EEEYKY----ECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQE 297
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
R++ +F+S +LI+T + ARG+DV+++ LVIN+D P + E+Y+HR+GR GR GRKG
Sbjct: 298 RDTIXKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 357
Query: 813 CAITFISEEDAKYSPDLVKALELSEQVVPDDLKALAD 849
AI F++ ED +L K + +P D+ L +
Sbjct: 358 VAINFVTNEDVGAXRELEKFYSTQIEELPSDIATLLN 394
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 152 bits (385), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 85/205 (41%), Positives = 117/205 (57%), Gaps = 7/205 (3%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L +I+E + P PIQA ALP+ + G+D IG A+TG+GKTLAF LP+ + P
Sbjct: 8 LKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA--P 65
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
G P L++ PTREL Q+ S++ A ++ V VYGG+G +Q L RG +
Sbjct: 66 SQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADA 123
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
VV TPGR +D L + +L RV V+DEAD M MGFE ++ ++ P RQT+L
Sbjct: 124 VVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 654 FSATFPRQVEILARKVLNKPVEIQV 678
FSAT P + LA + + PV I V
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 151 bits (381), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/205 (40%), Positives = 117/205 (57%), Gaps = 7/205 (3%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L +I+E + P PI+A ALP+ + G+D IG A+TG+GKTLAF LP+ + P
Sbjct: 8 LKPEILEALHGRGLTTPTPIEAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLA--P 65
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
G P L++ PTREL Q+ S++ A ++ V VYGG+G +Q L RG +
Sbjct: 66 SQERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEALLRGADA 123
Query: 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVL 653
VV TPGR +D L + +L RV V+DEAD M MGFE ++ ++ P RQT+L
Sbjct: 124 VVATPGRALDYLRQG---VLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLL 180
Query: 654 FSATFPRQVEILARKVLNKPVEIQV 678
FSAT P + LA + + PV I V
Sbjct: 181 FSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 150 bits (379), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 29/382 (7%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVL 523
+K++ + L ++++ + + + +P IQ ALP++++ ++ I +++G+GKT AFVL
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGV-- 580
ML ++ A P L ++PT EL Q I + K ++ G+ +
Sbjct: 151 AMLSQVE-----PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQIT 639
Q+ISE +IV+ TPG ++D S K + +++ V+DEAD M G + Q
Sbjct: 206 GQKISE-----QIVIGTPGTVLD--WCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPES 698
RI + + + Q +LFSATF V A+KV+ P I++ I Q V
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 318
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
++F L L G + +IF H+++ L +L K G+ L G R + I
Sbjct: 319 EKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 377
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKG 812
F+ +L+ T+V ARG+DV+++ +VINFD P E Y+HR+GRTGR G++G
Sbjct: 378 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG 437
Query: 813 CAITFISEEDAKYSPDLVKALE 834
A+ + D+K+S +++ ++
Sbjct: 438 LAVNMV---DSKHSMNILNRIQ 456
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 29/382 (7%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVL 523
+K++ + L ++++ + + + +P IQ ALP++++ ++ I +++G+GKT AFVL
Sbjct: 61 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 120
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGV-- 580
ML ++ A P L ++PT EL Q I + K ++ G+ +
Sbjct: 121 AMLSQVE-----PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 175
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQIT 639
Q+ISE +IV+ TPG ++D S K + +++ V+DEAD M G + Q
Sbjct: 176 GQKISE-----QIVIGTPGTVLD--WCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 228
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPES 698
RI + + + Q +LFSATF V A+KV+ P I++ I Q V
Sbjct: 229 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 288
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
++F L L G + +IF H+++ L +L K G+ L G R + I
Sbjct: 289 EKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 347
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKG 812
F+ +L+ T+V ARG+DV+++ +VINFD P E Y+HR+GRTGR G++G
Sbjct: 348 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG 407
Query: 813 CAITFISEEDAKYSPDLVKALE 834
A+ + D+K+S +++ ++
Sbjct: 408 LAVNMV---DSKHSMNILNRIQ 426
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 149 bits (376), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 29/382 (7%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVL 523
+K++ + L ++++ + + + +P IQ ALP++++ ++ I +++G+GKT AFVL
Sbjct: 40 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 99
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGV-- 580
ML ++ A P L ++PT EL Q I + K ++ G+ +
Sbjct: 100 AMLSQVE-----PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 154
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQIT 639
Q+ISE +IV+ TPG ++D S K + +++ V+DEAD M G + Q
Sbjct: 155 GQKISE-----QIVIGTPGTVLD--WCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 207
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPES 698
RI + + + Q +LFSATF V A+KV+ P I++ I Q V
Sbjct: 208 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 267
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
++F L L G + +IF H+++ L +L K G+ L G R + I
Sbjct: 268 EKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 326
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKG 812
F+ +L+ T+V ARG+DV+++ +VINFD P E Y+HR+GRTGR G++G
Sbjct: 327 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG 386
Query: 813 CAITFISEEDAKYSPDLVKALE 834
A+ + D+K+S +++ ++
Sbjct: 387 LAVNMV---DSKHSMNILNRIQ 405
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 113/382 (29%), Positives = 195/382 (51%), Gaps = 29/382 (7%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVL 523
+K++ + L ++++ + + + +P IQ ALP++++ ++ I +++G+GKT AFVL
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGV-- 580
ML ++ A P L ++PT EL Q I + K ++ G+ +
Sbjct: 84 AMLSQVE-----PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 138
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQIT 639
Q+ISE +IV+ TPG ++D S K + +++ V+DEAD M G + Q
Sbjct: 139 GQKISE-----QIVIGTPGTVLD--WCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL-VEVRPES 698
RI + + + Q +LFSATF V A+KV+ P I++ I Q V
Sbjct: 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 251
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
++F L L G + +IF H+++ L +L K G+ L G R + I
Sbjct: 252 EKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIE 310
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKG 812
F+ +L+ T+V ARG+DV+++ +VINFD P E Y+HR+GRTGR G++G
Sbjct: 311 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRG 370
Query: 813 CAITFISEEDAKYSPDLVKALE 834
A+ + D+K+S +++ ++
Sbjct: 371 LAVNMV---DSKHSMNILNRIQ 389
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 139/247 (56%), Gaps = 14/247 (5%)
Query: 445 EVSAYRKQLELKIHGKDVPKPIKTWHQTG----LTSKIMETIRKLNYEKPMPIQAQALPV 500
+++ R + ++ + G D+P PI T+ Q + S++++ I ++ P PIQ QA+PV
Sbjct: 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPV 62
Query: 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560
++ GR+ + A TGSGKTLAF +P+L +K QP A G LI++PTREL QIH ++
Sbjct: 63 MLHGRELLASAPTGSGKTLAFSIPILMQLK-QP---ANKGFRALIISPTRELASQIHREL 118
Query: 561 RKFAKVMGVRCVPVYGGSGVAQQIS-ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619
K ++ G R ++ + A++ + + +I+V TP R+I +L I +L V
Sbjct: 119 IKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGI-DLASVE 177
Query: 620 YLVMDEADRMFD---MGFEPQITRIVQNIRPDR-QTVLFSATFPRQVEILARKVLNKPVE 675
+LV+DE+D++F+ GF Q+ I + + +FSATF VE + L+ +
Sbjct: 178 WLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237
Query: 676 IQVGGRS 682
+ +G R+
Sbjct: 238 VSIGARN 244
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 103/165 (62%), Gaps = 2/165 (1%)
Query: 685 NKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYPCLS 743
+++ITQ V ESD+ LL+LL + L+FV +++ D+L D L H GY C S
Sbjct: 17 SENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSL-EDFLYHEGYACTS 75
Query: 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803
+HG + Q DRE + F+S +L+AT+VAARGLD+ ++ VINFD P+ E+YVHR+G
Sbjct: 76 IHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIG 135
Query: 804 RTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848
RTGR G G A +F +E + + DL+ L ++Q VP L+ +A
Sbjct: 136 RTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMA 180
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/206 (36%), Positives = 116/206 (56%), Gaps = 6/206 (2%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L+ K ++ +++ Y IQ Q + + + G+D +G AKTGSGKTLAF++P+L + +
Sbjct: 32 LSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALY-RL 90
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEI 593
+ DG LI++PTREL Q +RK K + GG + + +E I
Sbjct: 91 QWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHE-AERINNINI 149
Query: 594 VVCTPGRMIDILC-TSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
+VCTPGR++ + T T+L+ LV+DEADR+ DMGF + +++N+ RQT+
Sbjct: 150 LVCTPGRLLQHMDETVSFHATDLQ---MLVLDEADRILDMGFADTMNAVIENLPKKRQTL 206
Query: 653 LFSATFPRQVEILARKVLNKPVEIQV 678
LFSAT + V+ LAR L P + V
Sbjct: 207 LFSATQTKSVKDLARLSLKNPEYVWV 232
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 115/197 (58%), Gaps = 9/197 (4%)
Query: 479 METIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLP---MLRHIKDQPPV 535
++ I+++ + IQ +++ ++ GRD + AKTGSGKTLAF++P ++ ++ P
Sbjct: 66 LKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRN 125
Query: 536 AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVV 595
G LI++PTREL Q +++ + GGS + + +L G I+V
Sbjct: 126 GTGV----LILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIV 181
Query: 596 CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655
TPGR++D + + G + + + LV+DEADR+ D+GFE ++ +I++ + RQT+LFS
Sbjct: 182 ATPGRLLDHMQNTPGFM--YKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFS 239
Query: 656 ATFPRQVEILARKVLNK 672
AT R+VE LAR L K
Sbjct: 240 ATQTRKVEDLARISLKK 256
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 112/204 (54%), Gaps = 9/204 (4%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L +++ I ++ +EKP PIQ +++P+ +SGRD + AK G+GK+ A+++P+L +
Sbjct: 10 LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLD--- 66
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTE 592
D +++ PTREL Q+ + +K M G + + GG+ + I L
Sbjct: 67 --LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVH 124
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
+V+ TPGR++D++ K+ + V +V+DEAD++ F + I+ + +RQ +
Sbjct: 125 VVIATPGRILDLIKKGVAKVDH---VQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQIL 181
Query: 653 LFSATFPRQVEILARKVLNKPVEI 676
L+SATFP V+ L KP EI
Sbjct: 182 LYSATFPLSVQKFMNSHLEKPYEI 205
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 104/206 (50%), Gaps = 9/206 (4%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L ++ I +EKP IQ +A+ + G D I A++G+GKT F + +L+ ++ +
Sbjct: 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEF 96
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTE 592
L++APTREL QQI I MG C GG+ V ++ +L+
Sbjct: 97 KETQA-----LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPH 151
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652
IVV TPGR+ D+L + + + + V+DEAD M GF+ QI I Q + Q V
Sbjct: 152 IVVGTPGRVFDML---NRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVV 208
Query: 653 LFSATFPRQVEILARKVLNKPVEIQV 678
L SAT P V + +K + P+ I V
Sbjct: 209 LLSATMPTDVLEVTKKFMRDPIRILV 234
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 107 bits (267), Expect = 3e-23, Method: Composition-based stats.
Identities = 67/215 (31%), Positives = 103/215 (47%), Gaps = 11/215 (5%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPM 525
+ ++ L+ ++ I +E P IQ +A+ + G D I A++G+G T F + +
Sbjct: 14 VDSFDDMNLSESLLRGIYAYGFEXPSAIQQRAILPCIXGYDVIAQAQSGTGXTATFAISI 73
Query: 526 LRHIK-DQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584
L+ I+ D A L++APTREL QQI + MG C GG+ V ++
Sbjct: 74 LQQIELDLXATQA------LVLAPTRELAQQIQXVVMALGDYMGASCHACIGGTNVRAEV 127
Query: 585 SELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643
L+ I+V TPGR+ D+L + + + V+DEAD M GF QI I Q
Sbjct: 128 QXLQMEAPHIIVGTPGRVFDML---NRRYLSPXYIXMFVLDEADEMLSRGFXDQIYDIFQ 184
Query: 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+ + Q VL SAT P V + + P+ I V
Sbjct: 185 XLNSNTQVVLLSATMPSDVLEVTXXFMRDPIRILV 219
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 71/112 (63%)
Query: 718 LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777
+IF ++E + L +L GYPC +HG Q DR +++FK L+AT VAARG
Sbjct: 39 IIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARG 98
Query: 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829
+D++ + LVIN+D P E YVHR GRTGRAG KG AI+F++ + ++ D+
Sbjct: 99 IDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADI 150
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 90/162 (55%), Gaps = 3/162 (1%)
Query: 687 DITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746
D+ Q VE E + + LLE L + +LIF + DA+ LL G +++HG
Sbjct: 29 DVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86
Query: 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806
KDQ +R I F+ ++L+AT VA++GLD ++ VIN+D P E+YVHR+GRTG
Sbjct: 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTG 146
Query: 807 RAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDLKAL 847
+G G A TFI++ D DL L ++Q VP L+ L
Sbjct: 147 CSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 188
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 99.8 bits (247), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 18/229 (7%)
Query: 459 GKDVPKPIKTWHQTG-----LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKT 513
G DV + H +G L +++ I +E P +Q + +P + G D + AK+
Sbjct: 1 GSDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 60
Query: 514 GSGKTLAFVLPMLRHIKDQPPVAAGDGPVG-LIMAPTRELVQQIHSDIRKFAKVM-GVRC 571
G GKT FVL L+ ++ PV G V L+M TREL QI + +F+K M V+
Sbjct: 61 GMGKTAVFVLATLQQLE---PVT---GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKV 114
Query: 572 VPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630
+GG + + LK+ IVV TPGR IL + K NL+ + + ++DE D+M
Sbjct: 115 AVFFGGLSIKKDEEVLKKNCPHIVVGTPGR---ILALARNKSLNLKHIKHFILDECDKML 171
Query: 631 D-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
+ + + I + ++Q ++FSAT +++ + RK + P+EI V
Sbjct: 172 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 220
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762
+L +LL + E +++IFV S ++C AL + L++ +P +++H Q +R S FK
Sbjct: 21 KLFDLL-DVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD 79
Query: 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE- 821
+L+AT++ RG+D++ + + N+D P + Y+HRV R GR G KG AITF+S+E
Sbjct: 80 FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 139
Query: 822 DAKYSPDLVKALELSEQVVPDDL 844
DAK D+ E++ +PD++
Sbjct: 140 DAKILNDVQDRFEVNISELPDEI 162
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 105/222 (47%), Gaps = 23/222 (10%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
K + + L ++ + +E+P IQ +A+ I+ G D + A++G+GKT F +
Sbjct: 11 KVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 70
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
L+ I + P L++APTREL QI + A M ++ GG+ +
Sbjct: 71 AALQRID-----TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 125
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR-------VTYLVMDEADRMFDMGFEP 636
+E R +IVV TPGR+ D N++R + ++DEAD M GF+
Sbjct: 126 -AEGLRDAQIVVGTPGRVFD----------NIQRRRFRTDKIKMFILDEADEMLSSGFKE 174
Query: 637 QITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
QI +I + P Q VL SAT P V + K + PV I V
Sbjct: 175 QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 23/222 (10%)
Query: 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVL 523
K + + L +++ + +E+P IQ +A+ I+ G D + A++G+GKT F +
Sbjct: 18 KVVYKFDDMELDEQLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSI 77
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583
L+ I + P L++APTREL QI + A M ++ GG+ +
Sbjct: 78 AALQRID-----TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVED 132
Query: 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR-------VTYLVMDEADRMFDMGFEP 636
+E R +IVV TPGR+ D N++R + ++DEAD M GF+
Sbjct: 133 -AEGLRDAQIVVGTPGRVFD----------NIQRRRFRTDKIKMFILDEADEMLSSGFKE 181
Query: 637 QITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
QI +I + P Q VL SAT P V + K + PV I V
Sbjct: 182 QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 96.7 bits (239), Expect = 6e-20, Method: Composition-based stats.
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 478 IMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIK-DQPPVA 536
I+E I+ L + KP IQ + +P + G +G ++TG+GKT A++LP+ IK ++ V
Sbjct: 15 IIEAIKTLRFYKPTEIQERIIPGALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQ 74
Query: 537 AGDGPVGLIMAPTRELVQQIHSDIRKFAK------VMGVRCVPVYGGSGVAQQISELKRG 590
A +I APTREL QI+ + K K + RC + GG+ + + +L
Sbjct: 75 A------VITAPTRELATQIYHETLKITKFCPKDRXIVARC--LIGGTDKQKALEKLNVQ 126
Query: 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ 650
IV+ TPGR+ D + ++ LV+DEAD D GF + +I D Q
Sbjct: 127 PHIVIGTPGRINDFIREQA---LDVHTAHILVVDEADLXLDXGFITDVDQIAARXPKDLQ 183
Query: 651 TVLFSATFPRQVEILARKVLNKPVEIQV 678
++FSAT P +++ +K P + V
Sbjct: 184 XLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 95.9 bits (237), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 114/210 (54%), Gaps = 21/210 (10%)
Query: 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLP 524
K++ + GL ++++ I + ++KP IQ +ALP+++ R+ I +++G+GKT AF L
Sbjct: 22 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLT 81
Query: 525 MLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ---IHSDIRKFAKVMGVRCVPVYGGSGVA 581
ML + + P + +AP+REL +Q + ++ KF K+ VP
Sbjct: 82 MLTRVNPE-----DASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVP--DSFEKN 134
Query: 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITR 640
+QI+ +++V TPG ++D++ K+ L+++ V+DEAD M D G Q R
Sbjct: 135 KQIN-----AQVIVGTPGTVLDLM---RRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIR 186
Query: 641 IVQNIRPDRQTVLFSATFPRQVEILARKVL 670
+ + + D Q VLFSATF V A+K++
Sbjct: 187 VKRFLPKDTQLVLFSATFADAVRQYAKKIV 216
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 87/148 (58%), Gaps = 9/148 (6%)
Query: 684 VNKD-ITQL-VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741
VN D I QL ++ + E+D+F L EL G G +IFV +++ + L+ L G+
Sbjct: 4 VNVDAIKQLYMDCKNEADKFDVLTELYG-LMTIGSSIIFVATKKTANVLYGKLKSEGHEV 62
Query: 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP---NHYED- 797
LHG +R+ I DF+ +LI T+V ARG+D+ + +V+N+D P N D
Sbjct: 63 SILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADP 122
Query: 798 --YVHRVGRTGRAGRKGCAITFISEEDA 823
Y+HR+GRTGR GRKG AI+F+ ++++
Sbjct: 123 ATYIHRIGRTGRFGRKGVAISFVHDKNS 150
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 57/153 (37%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 679 GGRSVVNKD-ITQLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK 736
G + VN D I QL + + E+D+F L EL G G +IFV +++ + L+ L
Sbjct: 1 GATNEVNVDAIKQLYXDCKNEADKFDVLTELYG-LXTIGSSIIFVATKKTANVLYGKLKS 59
Query: 737 HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP---N 793
G+ LHG +R+ I DF+ +LI T+V ARG+D+ + V+N+D P N
Sbjct: 60 EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLAN 119
Query: 794 HYED---YVHRVGRTGRAGRKGCAITFISEEDA 823
D Y+HR+GRTGR GRKG AI+F+ ++++
Sbjct: 120 GQADPATYIHRIGRTGRFGRKGVAISFVHDKNS 152
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 87/152 (57%), Gaps = 9/152 (5%)
Query: 680 GRSVVNKD-ITQLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH 737
G + VN D I QL + + E+D+F L EL G G +IFV +++ + L+ L
Sbjct: 1 GANEVNVDAIKQLYXDCKNEADKFDVLTELYG-VXTIGSSIIFVATKKTANVLYGKLKSE 59
Query: 738 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP---NH 794
G+ LHG +R+ I DF+ +LI T+V ARG+D+ + V+N+D P N
Sbjct: 60 GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSXVVNYDLPTLANG 119
Query: 795 YED---YVHRVGRTGRAGRKGCAITFISEEDA 823
D Y+HR+GRTGR GRKG AI+F+ ++++
Sbjct: 120 QADPATYIHRIGRTGRFGRKGVAISFVHDKNS 151
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 73/137 (53%), Gaps = 1/137 (0%)
Query: 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745
K +TQ E + + L L + + +IF +S ++ + L + + + GY C +H
Sbjct: 17 KGVTQYYAYVTERQK-VHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 75
Query: 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805
Q R DF++ +C L+ T + RG+D++ + +VINFD P E Y+HR+GR+
Sbjct: 76 AKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRS 135
Query: 806 GRAGRKGCAITFISEED 822
GR G G AI I+ +D
Sbjct: 136 GRFGHLGLAINLITYDD 152
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/207 (30%), Positives = 106/207 (51%), Gaps = 11/207 (5%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
L+ ++E +R +E+P P+Q +A+P+ G D I AK+G+GKT F L +
Sbjct: 31 LSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSL---- 86
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFA-KVMGVRCVPVYGGSGVAQQISELKRGTE 592
V LI+APTRE+ QIHS I K+ G+ C GG+ ++Q + LK+
Sbjct: 87 -VLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-CH 144
Query: 593 IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQT 651
I V +PGR+ ++ N + ++DEAD++ + G F+ QI I ++ +Q
Sbjct: 145 IAVGSPGRIKQLIELD---YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQM 201
Query: 652 VLFSATFPRQVEILARKVLNKPVEIQV 678
+ SAT+P + K + P +++
Sbjct: 202 LAVSATYPEFLANALTKYMRDPTFVRL 228
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 84.3 bits (207), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 18/219 (8%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVL 523
+K++ + L ++++ + + + +P IQ ALP++++ ++ I +++G+GKT AFVL
Sbjct: 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 150
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGV-- 580
ML ++ A P L ++PT EL Q I + K ++ G+ +
Sbjct: 151 AMLSQVE-----PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 205
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQIT 639
Q+ISE +IV+ TPG ++D S K + +++ V+DEAD M G + Q
Sbjct: 206 GQKISE-----QIVIGTPGTVLD--WCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 258
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
RI + + + Q +LFSATF V A+KV+ P I++
Sbjct: 259 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 297
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 115/219 (52%), Gaps = 18/219 (8%)
Query: 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVL 523
+K++ + L ++++ + + + +P IQ ALP++++ ++ I +++G+GKT AFVL
Sbjct: 24 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVL 83
Query: 524 PMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGV-- 580
ML ++ A P L ++PT EL Q I + K ++ G+ +
Sbjct: 84 AMLSQVE-----PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER 138
Query: 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQIT 639
Q+ISE +IV+ TPG ++D S K + +++ V+DEAD M G + Q
Sbjct: 139 GQKISE-----QIVIGTPGTVLD--WCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSI 191
Query: 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678
RI + + + Q +LFSATF V A+KV+ P I++
Sbjct: 192 RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKL 230
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 59/110 (53%)
Query: 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772
E + ++FV +E+ L L + G L G Q R I N+L+AT
Sbjct: 29 EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD 88
Query: 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822
VAARG+D+ ++ V NFD P + Y+HR+GRT RAGRKG AI+ + D
Sbjct: 89 VAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHD 138
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 10/139 (7%)
Query: 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758
D++ L + G G+ +IF ++ L ++++ G+ L G R S I
Sbjct: 20 DKYQALCNIYGS-ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQ 78
Query: 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNH------YEDYVHRVGRTGRAGRKG 812
F+ +LI T+V ARG+DVK++ +V+NFD P YE Y+HR+GRTGR G+KG
Sbjct: 79 RFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKG 138
Query: 813 CAITFISEEDAKYSPDLVK 831
A I ++ P L+K
Sbjct: 139 LAFNMIEVDEL---PSLMK 154
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
++ ++ K P L HG Q R S + FK + +L+ T V ARG+D + V+
Sbjct: 51 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 110
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
P+ +Y+HR+GRT R+G++G ++ FI +++ + V+ LE ++ +V
Sbjct: 111 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF----VRELEDAKNIV 158
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
++ ++ K P L HG Q R S + FK + +L+ T V ARG+D + V+
Sbjct: 51 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 110
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
P+ +Y+HR+GRT R+G++G ++ FI +++ + V+ LE ++ +V
Sbjct: 111 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF----VRELEDAKNIV 158
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 74.3 bits (181), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 62/112 (55%), Gaps = 4/112 (3%)
Query: 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN 788
++ ++ K P L HG Q R S + FK + +L+ T V ARG+D + V+
Sbjct: 51 SILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ 110
Query: 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVV 840
P+ +Y+HR+GRT R+G++G ++ FI +++ + V+ LE ++ +V
Sbjct: 111 IGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPF----VRELEDAKNIV 158
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
+ ++F ++ + + + + LL+ G+P +LHG Q +RE + F+ +L+AT VAA
Sbjct: 30 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAA 89
Query: 776 RGLDVKELELVINFDAPNHYEDYVH 800
RGLD+ +++LV+++ P+ E Y H
Sbjct: 90 RGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 78/130 (60%)
Query: 718 LIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777
+IF +++ K + L L + +++ Q +R++ + +F+S +LI+T + ARG
Sbjct: 34 VIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARG 93
Query: 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837
+DV+++ LVIN+D P + E+Y+HR+GR GR GRKG AI F++ ED +L K
Sbjct: 94 IDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQI 153
Query: 838 QVVPDDLKAL 847
+ +P D+ L
Sbjct: 154 EELPSDIATL 163
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 53/85 (62%)
Query: 716 KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775
+ ++F ++ + + + + LL+ G+P +LHG Q +RE + F+ +L+AT VAA
Sbjct: 33 RAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAA 92
Query: 776 RGLDVKELELVINFDAPNHYEDYVH 800
RGLD+ +++LV+++ P+ E Y H
Sbjct: 93 RGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 98/440 (22%), Positives = 174/440 (39%), Gaps = 91/440 (20%)
Query: 506 DCIGVAKTGSGKTLAFVLPMLR----HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561
+ + A TG+GKT ++ MLR HI + D + + +AP R LVQ++ +
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKI-IYIAPMRSLVQEM---VG 152
Query: 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621
F K + + V +G Q E T+I+VCTP + DI+ GG+ T + V +
Sbjct: 153 SFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLI 211
Query: 622 VMDEADRMFD---MGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLN---- 671
++DE + D E + R ++NI + D + + SAT P ++ ++
Sbjct: 212 ILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKG 271
Query: 672 --------KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723
+PV ++ + K + ++ E + +++E G K ++L+FVHS
Sbjct: 272 LFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEI-VYEKIMEHAG----KNQVLVFVHS 326
Query: 724 Q--------------------------------------EKCDAL-FRDLLKHGYPCLSL 744
+ E+C L +DLL +G+
Sbjct: 327 RKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI--H 384
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE-------- 796
H + DR F +L++T+ A G+++ ++I E
Sbjct: 385 HAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELG 444
Query: 797 --DYVHRVGRTGR--AGRKGCAITFISEEDAKYSPDLV-KALELSEQVV---PDDLKALA 848
D + +GR GR KG I S + +Y L+ + L + Q+V PD L A
Sbjct: 445 ALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN--A 502
Query: 849 DSFMAKVNQGLEQAHGTGYG 868
+ + V + + GY
Sbjct: 503 EIVLGNVQNAKDAVNWLGYA 522
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 492 PIQAQALPVIMSGRDCIGV-AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550
PIQ Q + + D + V A TGSGKT+ +LR + + + +G I P
Sbjct: 929 PIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRML-----LQSSEGRCVYI-TPME 982
Query: 551 ELVQQIHSD-IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609
L +Q++ D KF + + V + G + ++ L +G I++ TP + DIL
Sbjct: 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL--LGKGN-IIISTPEKW-DILSRRW 1038
Query: 610 GKITNLRRVTYLVMDEA 626
+ N++ + V+DE
Sbjct: 1039 KQRKNVQNINLFVVDEV 1055
>pdb|4F92|B Chain B, Brr2 Helicase Region S1087l
pdb|4F93|B Chain B, Brr2 Helicase Region S1087l, Mg-Atp
Length = 1724
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 98/440 (22%), Positives = 174/440 (39%), Gaps = 91/440 (20%)
Query: 506 DCIGVAKTGSGKTLAFVLPMLR----HIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561
+ + A TG+GKT ++ MLR HI + D + + +AP R LVQ++ +
Sbjct: 97 NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKI-IYIAPMRSLVQEM---VG 152
Query: 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621
F K + + V +G Q E T+I+VCTP + DI+ GG+ T + V +
Sbjct: 153 SFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKW-DIITRKGGERTYTQLVRLI 211
Query: 622 VMDEADRMFD---MGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLN---- 671
++DE + D E + R ++NI + D + + SAT P ++ ++
Sbjct: 212 ILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKG 271
Query: 672 --------KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723
+PV ++ + K + ++ E + +++E G K ++L+FVHS
Sbjct: 272 LFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEI-VYEKIMEHAG----KNQVLVFVHS 326
Query: 724 Q--------------------------------------EKCDAL-FRDLLKHGYPCLSL 744
+ E+C L +DLL +G+
Sbjct: 327 RKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAI--H 384
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYE-------- 796
H + DR F +L++T+ A G+++ ++I E
Sbjct: 385 HAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELG 444
Query: 797 --DYVHRVGRTGR--AGRKGCAITFISEEDAKYSPDLV-KALELSEQVV---PDDLKALA 848
D + +GR GR KG I S + +Y L+ + L + Q+V PD L A
Sbjct: 445 ALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN--A 502
Query: 849 DSFMAKVNQGLEQAHGTGYG 868
+ + V + + GY
Sbjct: 503 EIVLGNVQNAKDAVNWLGYA 522
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 492 PIQAQALPVIMSGRDCIGV-AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550
PIQ Q + + D + V A TGSGKT+ +LR + + + +G I P
Sbjct: 929 PIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRML-----LQSSEGRCVYI-TPME 982
Query: 551 ELVQQIHSD-IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609
L +Q++ D KF + + V + G + ++ L +G I++ TP + DIL
Sbjct: 983 ALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL--LGKGN-IIISTPEKW-DILSRRW 1038
Query: 610 GKITNLRRVTYLVMDEA 626
+ N++ + V+DE
Sbjct: 1039 KQRKNVQNINLFVVDEV 1055
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 42/365 (11%)
Query: 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531
+G I++ + KL EK P+Q + + V M+G++ V TG GK+L + LP L
Sbjct: 29 SGKVKDILQNVFKL--EKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPAL----- 81
Query: 532 QPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG----------VA 581
DG L++ P L++ D K +G+ + S +
Sbjct: 82 -----CSDG-FTLVICPLISLME----DQLMVLKQLGISATMLNASSSKEHVKWVHAEMV 131
Query: 582 QQISELKRGTEIVVCTPGRMID--ILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEP- 636
+ SELK ++ TP ++ + + K RR T + +DE G F P
Sbjct: 132 NKNSELK----LIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPD 187
Query: 637 -QITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DITQLVEV 694
+ I++ P+ + +AT V A+K+L +E + N+ ++ V
Sbjct: 188 YKALGILKRQFPNASLIGLTATATNHVLTDAQKIL--CIEKCFTFTASFNRPNLYYEVRQ 245
Query: 695 RPES--DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTD 752
+P + D +++L+ Y+ +I+ SQ+ + + L G + H + D
Sbjct: 246 KPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPED 305
Query: 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812
+ + + +N +++AT G+D ++ VI+ E+Y GR GR K
Sbjct: 306 KTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKA 365
Query: 813 CAITF 817
I +
Sbjct: 366 DCILY 370
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 84/378 (22%), Positives = 146/378 (38%), Gaps = 63/378 (16%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF--------- 521
++G + ET Y++ P Q + + ++SGRDC+ V TG GK+L +
Sbjct: 10 ESGAKQVLQET---FGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNG 66
Query: 522 ----VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGG 577
V P++ +KDQ +G + T+ QQ+ V G
Sbjct: 67 LTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLE----------------VMTG 110
Query: 578 SGVAQQISELKRGTEIVVCTPGR-MIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--F 634
Q ++ P R M+D + L +DEA + G F
Sbjct: 111 CRTGQ--------IRLLYIAPERLMLDNFLEHLAHWNPV----LLAVDEAHCISQWGHDF 158
Query: 635 EPQITRIVQNIRPDRQTVLFSATFP------RQVEILARKVLNKPVEIQVGGRSVVNKDI 688
P+ + Q +R T+ F A RQ +I+ LN P+ IQ+ N
Sbjct: 159 RPEYAALGQ-LRQRFPTLPFMALTATADDTTRQ-DIVRLLGLNDPL-IQISSFDRPNIRY 215
Query: 689 TQLVEVRPESDRFLRLLELLGEWYEKGKI-LIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747
+ + +P D+ +R ++ ++GK +I+ +S+ K + L G + H
Sbjct: 216 MLMEKFKP-LDQLMRYVQ-----EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAG 269
Query: 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
+ R F+ + +++AT G++ + V++FD P + E Y GR GR
Sbjct: 270 LENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
Query: 808 AGRKGCAITFISEEDAKY 825
G A+ F D +
Sbjct: 330 DGLPAEAMLFYDPADMAW 347
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 83/378 (21%), Positives = 142/378 (37%), Gaps = 63/378 (16%)
Query: 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF--------- 521
++G + ET Y++ P Q + + ++SGRDC+ V TG GK+L +
Sbjct: 10 ESGAKQVLQET---FGYQQFRPGQEEIIDTVLSGRDCLVVXPTGGGKSLCYQIPALLLNG 66
Query: 522 ----VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGG 577
V P++ KDQ +G + T+ QQ+ V G
Sbjct: 67 LTVVVSPLISLXKDQVDQLQANGVAAACLNSTQTREQQLE----------------VXTG 110
Query: 578 SGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGKITNLRRVTYLVMDEADRMFDMG--F 634
Q ++ P R+ +D + L +DEA + G F
Sbjct: 111 CRTGQ--------IRLLYIAPERLXLDNFLEHLAHWNPV----LLAVDEAHCISQWGHDF 158
Query: 635 EPQITRIVQNIRPDRQTVLFSATFP------RQVEILARKVLNKPVEIQVGGRSVVNKDI 688
P+ + Q +R T+ F A RQ +I+ LN P+ IQ+ N
Sbjct: 159 RPEYAALGQ-LRQRFPTLPFXALTATADDTTRQ-DIVRLLGLNDPL-IQISSFDRPNIRY 215
Query: 689 TQLVEVRPESDRFLRLLELLGEWYEKGKI-LIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747
+ +P D+ R ++ ++GK +I+ +S+ K + L G + H
Sbjct: 216 XLXEKFKP-LDQLXRYVQ-----EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAG 269
Query: 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
+ R F+ + +++AT G++ + V++FD P + E Y GR GR
Sbjct: 270 LENNVRADVQEKFQRDDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGR 329
Query: 808 AGRKGCAITFISEEDAKY 825
G A F D +
Sbjct: 330 DGLPAEAXLFYDPADXAW 347
>pdb|1WP9|A Chain A, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|B Chain B, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|C Chain C, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|D Chain D, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|E Chain E, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
pdb|1WP9|F Chain F, Crystal Structure Of Pyrococcus Furiosus Hef Helicase
Domain
Length = 494
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 14/138 (10%)
Query: 684 VNKDITQLVEVR------PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH 737
+ K I+ LV+ + P+ D+ ++ + + KI++F + +E + +L+K
Sbjct: 325 MKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD 384
Query: 738 GYPCLSLHG-AKDQTDR-------ESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
G G A + DR + + +F N+L+ATSV GLDV E++LV+ +
Sbjct: 385 GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFY 444
Query: 790 DAPNHYEDYVHRVGRTGR 807
+ + R GRTGR
Sbjct: 445 EPVPSAIRSIQRRGRTGR 462
>pdb|2YKG|A Chain A, Structural Insights Into Rna Recognition By Rig-I
Length = 696
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 489 KPMPIQAQ-ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
KP Q + ALP M G++ I A TG GKT +L H+K P G + A
Sbjct: 13 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFA 68
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
+ +Q S K+ + G R + G + + ++ +I++ TP +++ L
Sbjct: 69 NQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 126
Query: 608 SGGKITNLRRVTYLVMDEA 626
G I +L T ++ DE
Sbjct: 127 KKGTIPSLSIFTLMIFDEC 145
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI 815
N+LIATSVA G+D+ + LVI ++ + + GR GRA C +
Sbjct: 463 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 511
>pdb|3TMI|A Chain A, Structural Basis For Rna Recognition And Activation Of
Rig-I
Length = 695
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 489 KPMPIQAQ-ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
KP Q + ALP M G++ I A TG GKT +L H+K P G + A
Sbjct: 12 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFA 67
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
+ +Q S K+ + G R + G + + ++ +I++ TP +++ L
Sbjct: 68 NQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 125
Query: 608 SGGKITNLRRVTYLVMDEA 626
G I +L T ++ DE
Sbjct: 126 KKGTIPSLSIFTLMIFDEC 144
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI 815
N+LIATSVA G+D+ + LVI ++ + + GR GRA C +
Sbjct: 462 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 510
>pdb|4AY2|A Chain A, Capturing 5' Tri-Phosphorylated Rna Duplex By Rig-I
Length = 687
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 489 KPMPIQAQ-ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
KP Q + ALP M G++ I A TG GKT +L H+K P G + A
Sbjct: 4 KPRNYQLELALPA-MKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFA 59
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
+ +Q S K+ + G R + G + + ++ +I++ TP +++ L
Sbjct: 60 NQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNL-- 117
Query: 608 SGGKITNLRRVTYLVMDEA 626
G I +L T ++ DE
Sbjct: 118 KKGTIPSLSIFTLMIFDEC 136
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI 815
N+LIATSVA G+D+ + LVI ++ + + GR GRA C +
Sbjct: 454 NILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFL 502
>pdb|4GL2|A Chain A, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
pdb|4GL2|B Chain B, Structural Basis For Dsrna Duplex Backbone Recognition By
Mda5
Length = 699
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
Q +++ IS F++ NLLIAT+VA GLD+KE +VI +
Sbjct: 450 QNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRY 489
>pdb|4I1S|A Chain A, Melanoma Differentiation Associated Protein-5 Helicase
Domain Complex With Inhibitor Non-structural Protein V
Length = 243
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789
Q ++ IS F++ NLLIAT+VA GLD+KE +VI +
Sbjct: 200 QNEQREVISKFRTGKINLLIATTVAEEGLDIKECNIVIRY 239
>pdb|3TBK|A Chain A, Mouse Rig-I Atpase Domain
Length = 555
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 489 KPMPIQAQ-ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547
KP Q + ALP G++ I A TG GKT +L H+K P G + A
Sbjct: 4 KPRNYQLELALPA-KKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFA 59
Query: 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT 607
+ +Q + ++ + +G + G + + + + +I++ TP +++ L
Sbjct: 60 NQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNL-- 117
Query: 608 SGGKITNLRRVTYLVMDEA 626
+ G I +L T + DE
Sbjct: 118 NNGAIPSLSVFTLXIFDEC 136
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI 815
N+LIATSVA G+D+ E LVI ++ + + GR GRA C +
Sbjct: 454 NILIATSVADEGIDIAECNLVILYEYVGNVIKXIQTRGR-GRARDSKCFL 502
>pdb|3DIN|A Chain A, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
pdb|3DIN|B Chain B, Crystal Structure Of The Protein-Translocation Complex
Formed By The Secy Channel And The Seca Atpase
Length = 871
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQEKCDALFRDLLKHGY 739
+ ++ KD LV R + +++ +++E + + Y+KG+ +L+ S EK + L L K G
Sbjct: 441 KPMIRKDHDDLV-FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGI 499
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK------ELELVINFDAPN 793
P L+ + + E + + IAT++A RG D+K EL +
Sbjct: 500 PHQVLNAKYHEKEAEIVAKAGQKGMVT--IATNMAGRGTDIKLGPGVAELGGLCIIGTER 557
Query: 794 HYEDYV--HRVGRTGRAGRKGCAITFISEED 822
H + GR GR G G +I F+S ED
Sbjct: 558 HESRRIDNQLRGRAGRQGDPGESIFFLSLED 588
>pdb|3JUX|A Chain A, Structure Of The Translocation Atpase Seca From Thermotoga
Maritima
Length = 822
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 12/151 (7%)
Query: 681 RSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQEKCDALFRDLLKHGY 739
+ ++ KD LV R + +++ +++E + + Y+KG+ +L+ S EK + L L K G
Sbjct: 441 KPMIRKDHDDLV-FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGI 499
Query: 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK------ELELVINFDAPN 793
P L+ + + E + + IAT++A RG D+K EL +
Sbjct: 500 PHQVLNAKYHEKEAEIVAKAGQKGMVT--IATNMAGRGTDIKLGPGVAELGGLCIIGTER 557
Query: 794 HYEDYV--HRVGRTGRAGRKGCAITFISEED 822
H + GR GR G G +I F+S ED
Sbjct: 558 HESRRIDNQLRGRAGRQGDPGESIFFLSLED 588
>pdb|4A2P|A Chain A, Structure Of Duck Rig-I Helicase Domain
pdb|4A36|A Chain A, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
pdb|4A36|B Chain B, Structure Of Duck Rig-I Helicase Domain Bound To 19-Mer
Dsrna And Atp Transition State Analogue
Length = 556
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 479 METIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538
MET + +Y+ + A P I +G++ + A TGSGKT +L H ++ P AG
Sbjct: 3 METKKARSYQIEL-----AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP---AG 53
Query: 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTP 598
+ +A + +Q + + + G + G + + ++ ++I+V TP
Sbjct: 54 RKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTP 113
Query: 599 GRMIDILCTSGGKITNLRRVTYLVMDEA 626
+++ G +T+L T ++ DE
Sbjct: 114 QILVNSF--EDGTLTSLSIFTLMIFDEC 139
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 746 GAKDQT------DRESTISDFKSNVCN-LLIATSVAARGLDVKELELVINFDAPNHYEDY 798
G +DQT ++ + FK++ N LLIATSVA G+D+ + LV+ ++ +
Sbjct: 428 GRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKM 487
Query: 799 VHRVGRTGRAGRKGCAIT 816
+ GR AG K +T
Sbjct: 488 IQVRGRGRAAGSKCILVT 505
>pdb|4A2W|A Chain A, Structure Of Full-Length Duck Rig-I
pdb|4A2W|B Chain B, Structure Of Full-Length Duck Rig-I
Length = 936
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 497 ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556
A P I +G++ + A TGSGKT +L H ++ P AG + +A + +Q
Sbjct: 257 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQ 312
Query: 557 HSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616
+ + + G + G + + ++ ++I+V TP +++ G +T+L
Sbjct: 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSF--EDGTLTSLS 370
Query: 617 RVTYLVMDEA 626
T ++ DE
Sbjct: 371 IFTLMIFDEC 380
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 746 GAKDQT------DRESTISDFKSNVCN-LLIATSVAARGLDVKELELVINFDAPNHYEDY 798
G +DQT ++ + FK++ N LLIATSVA G+D+ + LV+ ++ +
Sbjct: 669 GRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKM 728
Query: 799 VHRVGRTGRAGRKGCAITFISE 820
+ GR AG K +T +E
Sbjct: 729 IQVRGRGRAAGSKCILVTSKTE 750
>pdb|4A2Q|A Chain A, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|B Chain B, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|D Chain D, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
pdb|4A2Q|E Chain E, Structure Of Duck Rig-I Tandem Cards And Helicase Domain
Length = 797
Score = 37.4 bits (85), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 497 ALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556
A P I +G++ + A TGSGKT +L H ++ P AG + +A + +Q
Sbjct: 257 AQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQ 312
Query: 557 HSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR 616
+ + + G + G + + ++ ++I+V TP +++ G +T+L
Sbjct: 313 KNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSF--EDGTLTSLS 370
Query: 617 RVTYLVMDEA 626
T ++ DE
Sbjct: 371 IFTLMIFDEC 380
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 746 GAKDQT------DRESTISDFKSNVCN-LLIATSVAARGLDVKELELVINFDAPNHYEDY 798
G +DQT ++ + FK++ N LLIATSVA G+D+ + LV+ ++ +
Sbjct: 669 GRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKM 728
Query: 799 VHRVGRTGRAGRKGCAITFISE 820
+ GR AG K +T +E
Sbjct: 729 IQVRGRGRAAGSKCILVTSKTE 750
>pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In
Complex With Unwound Dna
pdb|2P6U|A Chain A, Apo Structure Of The Hel308 Superfamily 2 Helicase
Length = 702
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP 533
++S + +++ E+ P QA+A+ + SG++ + T +GKTL + M+R
Sbjct: 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVRE----- 64
Query: 534 PVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570
A G L + P R L + + +K+ K+ G+R
Sbjct: 65 ---AIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLR 97
>pdb|3YPI|A Chain A, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
pdb|3YPI|B Chain B, Electrophilic Catalysis In Triosephosphase Isomerase: The
Role Of Histidine-95
Length = 247
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 496 QALPVIMSGRDCIG--VAKTGSGKTLAFVL----PMLRHIKDQPPVAAGDGPVGLI---M 546
Q + VI+ CIG + + +GKTL V +L +KD V PV I +
Sbjct: 118 QGVGVIL----CIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGL 173
Query: 547 APTRELVQQIHSDIRKF-AKVMGVRCVP----VYGGS 578
A T E Q IH+ IRKF A +G + +YGGS
Sbjct: 174 AATPEDAQDIHASIRKFLASKLGDKAASELRILYGGS 210
>pdb|1YPI|A Chain A, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|1YPI|B Chain B, Structure Of Yeast Triosephosphate Isomerase At 1.9-
Angstroms Resolution
pdb|2YPI|A Chain A, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|2YPI|B Chain B, Crystallographic Analysis Of The Complex Between
Triosephosphate Isomerase And 2-Phosphoglycolate At 2.5-
Angstroms Resolution. Implications For Catalysis
pdb|7TIM|A Chain A, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
pdb|7TIM|B Chain B, Structure Of The Triosephosphate Isomerase-
Phosphoglycolohydroxamate Complex: An Analogue Of The
Intermediate On The Reaction Pathway
Length = 247
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 496 QALPVIMSGRDCIG--VAKTGSGKTLAFVL----PMLRHIKDQPPVAAGDGPVGLI---M 546
Q + VI+ CIG + + +GKTL V +L +KD V PV I +
Sbjct: 118 QGVGVIL----CIGETLEEKKAGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGL 173
Query: 547 APTRELVQQIHSDIRKF-AKVMGVRCVP----VYGGS 578
A T E Q IH+ IRKF A +G + +YGGS
Sbjct: 174 AATPEDAQDIHASIRKFLASKLGDKAASELRILYGGS 210
>pdb|2FZL|A Chain A, Structure Of C-Terminal Domain Of Archaeoglobus Fulgidus
Xpb
Length = 219
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
+R L + E + K KI+IF E + + L P ++ +++ +RE + F+
Sbjct: 102 IRKLREILERHRKDKIIIFTRHNELVYRISKVFL---IPAITHRTSRE--EREEILEGFR 156
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
+ ++++ V G+DV + + + +Y+ R+GR R
Sbjct: 157 TGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR 202
>pdb|2FWR|A Chain A, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|B Chain B, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|C Chain C, Structure Of Archaeoglobus Fulgidis Xpb
pdb|2FWR|D Chain D, Structure Of Archaeoglobus Fulgidis Xpb
Length = 472
Score = 33.1 bits (74), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761
+R L + E + K KI+IF E + + L P ++ ++++ RE + F+
Sbjct: 337 IRKLREILERHRKDKIIIFTRHNELVYRISKVFL---IPAITHRTSREE--REEILEGFR 391
Query: 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR 807
+ ++++ V G+DV + + + +Y+ R+GR R
Sbjct: 392 TGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILR 437
>pdb|1NF0|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NF0|B Chain B, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|A Chain A, Triosephosphate Isomerase In Complex With Dhap
pdb|1NEY|B Chain B, Triosephosphate Isomerase In Complex With Dhap
Length = 247
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 496 QALPVIMSGRDCIG--VAKTGSGKTLAFVL----PMLRHIKDQPPVAAGDGPVGLI---M 546
Q + VI+ CIG + + +GKTL V +L +KD V PV I +
Sbjct: 118 QGVGVIL----CIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGL 173
Query: 547 APTRELVQQIHSDIRKF-AKVMGVRCVP----VYGGS 578
A T E Q IH+ IRKF A +G + +YGGS
Sbjct: 174 AATPEDAQDIHASIRKFLASKLGDKAASELRILYGGS 210
>pdb|1I45|A Chain A, Yeast Triosephosphate Isomerase (Mutant)
pdb|1I45|B Chain B, Yeast Triosephosphate Isomerase (Mutant)
Length = 248
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 18/97 (18%)
Query: 496 QALPVIMSGRDCIG--VAKTGSGKTLAFVL----PMLRHIKDQPPVAAGDGPVGLI---M 546
Q + VI+ CIG + + +GKTL V +L +KD V PV I +
Sbjct: 119 QGVGVIL----CIGETLEEKKAGKTLDVVERQLNAVLEEVKDFTNVVVAYEPVXAIGTGL 174
Query: 547 APTRELVQQIHSDIRKF-AKVMGVRCVP----VYGGS 578
A T E Q IH+ IRKF A +G + +YGGS
Sbjct: 175 AATPEDAQDIHASIRKFLASKLGDKAASELRILYGGS 211
>pdb|2EYQ|A Chain A, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
pdb|2EYQ|B Chain B, Crystal Structure Of Escherichia Coli Transcription-Repair
Coupling Factor
Length = 1151
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 745 HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRV-G 803
HG + + E ++DF N+L+ T++ G+D+ +I A + +H++ G
Sbjct: 845 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 904
Query: 804 RTGRAGRKGCA 814
R GR+ + A
Sbjct: 905 RVGRSHHQAYA 915
>pdb|3UWX|B Chain B, Crystal Structure Of Uvra-Uvrb Complex
Length = 683
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 19/155 (12%)
Query: 692 VEVRPESDRFLRLLELLGEWYEK----GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747
++VRP + + +L+GE +E+ + L+ +++ + L L + G LH
Sbjct: 447 IDVRPTKGQ---IDDLIGEIHERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSE 503
Query: 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR----VG 803
+R I D + ++L+ ++ GLD+ E+ LV DA E ++ +
Sbjct: 504 IKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK--EGFLRSERSLIQ 561
Query: 804 RTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838
GRA R + Y+ + K++E++ Q
Sbjct: 562 TIGRAARNANGHVIM------YADTITKSMEIAIQ 590
>pdb|1NKT|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NKT|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis Complex With Adpbs
pdb|1NL3|A Chain A, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
pdb|1NL3|B Chain B, Crystal Structure Of The Seca Protein Translocation Atpase
From Mycobacterium Tuberculosis In Apo Form
Length = 922
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 683 VVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQEKCDALFRDLLKHGYPC 741
++ +D + L+ + E +++ +++ + E Y KG+ +LI S E+ + L R K P
Sbjct: 429 MIREDQSDLI-YKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPH 487
Query: 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780
L+ + +E+TI + +AT++A RG D+
Sbjct: 488 NVLNAKYHE--QEATIIAVAGRRGGVTVATNMAGRGTDI 524
>pdb|4FF7|A Chain A, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
pdb|4FF7|B Chain B, Structure Of C126s Mutant Of Saccharomyces Cerevisiae
Triosephosphate Isomerase
Length = 248
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 496 QALPVIMSGRDCIGVAKTGSGKTLAFVL----PMLRHIKDQPPVAAGDGPVGLI---MAP 548
Q + VI+S + + K +GKTL V +L +KD V PV I +A
Sbjct: 119 QGVGVILSIGETLEEKK--AGKTLDVVERQLNAVLEEVKDWTNVVVAYEPVWAIGTGLAA 176
Query: 549 TRELVQQIHSDIRKF-AKVMGVRCVP----VYGGS 578
T E Q IH+ IRKF A +G + +YGGS
Sbjct: 177 TPEDAQDIHASIRKFLASKLGDKAASELRILYGGS 211
>pdb|1TF2|A Chain A, Crystal Structure Of Seca:adp In An Open Conformation From
Bacillus Subtilis
pdb|1TF5|A Chain A, Crystal Structure Of Seca In An Open Conformation From
Bacillus Subtilis
Length = 844
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQE 725
R + N V R VV D L+ R +F + E + + Y G+ +L+ + E
Sbjct: 385 RNIYNMQVVTIPTNRPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 443
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD------ 779
+ + + L G P L+ AK+ +RE+ I + + IAT++A RG D
Sbjct: 444 TSELISKLLKNKGIPHQVLN-AKNH-EREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEG 501
Query: 780 VKELELVINFDAPNHYEDYVHRV--GRTGRAGRKGCAITFISEED 822
VKEL + H + GR+GR G G ++S ED
Sbjct: 502 VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546
>pdb|1M6N|A Chain A, Crystal Structure Of The Seca Translocation Atpase From
Bacillus Subtilis
pdb|1M74|A Chain A, Crystal Structure Of Mg-Adp-Bound Seca From Bacillus
Subtilis
Length = 802
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQE 725
R + N V R VV D L+ R +F + E + + Y G+ +L+ + E
Sbjct: 382 RNIYNMQVVTIPTNRPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 440
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD------ 779
+ + + L G P L+ AK+ +RE+ I + + IAT++A RG D
Sbjct: 441 TSELISKLLKNKGIPHQVLN-AKNH-EREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEG 498
Query: 780 VKELELVINFDAPNHYEDYVHRV--GRTGRAGRKGCAITFISEED 822
VKEL + H + GR+GR G G ++S ED
Sbjct: 499 VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 543
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 730 LFRDLLKHGYPCLSL---HGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786
++ L K +P L HG Q +++ + +F ++L++T+V G+DV ++
Sbjct: 602 MYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVM 661
Query: 787 INFDAPNHYEDYVHRV-GRTGRAGRKGCAITFISE 820
+ + +H++ GR GR G++ + +
Sbjct: 662 VIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696
>pdb|3IQM|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 802
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQE 725
R + N V R VV D L+ R +F + E + + Y G+ +L+ + E
Sbjct: 382 RNIYNMQVVTIPTNRPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 440
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD------ 779
+ + + L G P L+ AK+ +RE+ I + + IAT++A RG D
Sbjct: 441 TSELISKLLKNKGIPHQVLN-AKNH-EREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEG 498
Query: 780 VKELELVINFDAPNHYEDYVHRV--GRTGRAGRKGCAITFISEED 822
VKEL + H + GR+GR G G ++S ED
Sbjct: 499 VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 543
>pdb|3JV2|A Chain A, Crystal Structure Of B. Subtilis Seca With Bound Peptide
pdb|3JV2|B Chain B, Crystal Structure Of B. Subtilis Seca With Bound Peptide
Length = 783
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQE 725
R + N V R VV D L+ R +F + E + + Y G+ +L+ + E
Sbjct: 385 RNIYNMQVVTIPTNRPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 443
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD------ 779
+ + + L G P L+ AK+ +RE+ I + + IAT++A RG D
Sbjct: 444 TSELISKLLKNKGIPHQVLN-AKNH-EREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEG 501
Query: 780 VKELELVINFDAPNHYEDYVHRV--GRTGRAGRKGCAITFISEED 822
VKEL + H + GR+GR G G ++S ED
Sbjct: 502 VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546
>pdb|3DL8|A Chain A, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
pdb|3DL8|B Chain B, Structure Of The Complex Of Aquifex Aeolicus Secyeg And
Bacillus Subtilis Seca
Length = 779
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQE 725
R + N V R VV D L+ R +F + E + + Y G+ +L+ + E
Sbjct: 382 RNIYNMQVVTIPTNRPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 440
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD------ 779
+ + + L G P L+ AK+ +RE+ I + + IAT++A RG D
Sbjct: 441 TSELISKLLKNKGIPHQVLN-AKNH-EREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEG 498
Query: 780 VKELELVINFDAPNHYEDYVHRV--GRTGRAGRKGCAITFISEED 822
VKEL + H + GR+GR G G ++S ED
Sbjct: 499 VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 543
>pdb|2IBM|A Chain A, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
pdb|2IBM|B Chain B, A Novel Dimer Interface And Conformational Changes
Revealed By An X- Ray Structure Of B. Subtilis Seca
Length = 780
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQE 725
R + N V R VV D L+ R +F + E + + Y G+ +L+ + E
Sbjct: 382 RNIYNMQVVTIPTNRPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 440
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD------ 779
+ + + L G P L+ AK+ +RE+ I + + IAT++A RG D
Sbjct: 441 TSELISKLLKNKGIPHQVLN-AKNH-EREAQIIEEAGQKGAVTIATNMAGRGTDIKLGEG 498
Query: 780 VKELELVINFDAPNHYEDYVHRV--GRTGRAGRKGCAITFISEED 822
VKEL + H + GR+GR G G ++S ED
Sbjct: 499 VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 543
>pdb|1T5L|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
pdb|1T5L|B Chain B, Crystal Structure Of The Dna Repair Protein Uvrb Point
Mutant Y96a Revealing A Novel Fold For Domain 2
Length = 658
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 13/152 (8%)
Query: 692 VEVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750
++VRP + L+ + E E+ + L+ +++ + L L + G LH
Sbjct: 422 IDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKT 481
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR----VGRTG 806
+R I D + ++L+ ++ GLD+ E+ LV DA E ++ + G
Sbjct: 482 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK--EGFLRSERSLIQTIG 539
Query: 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838
RA R + Y+ + K++E++ Q
Sbjct: 540 RAARNANGHVIM------YADTITKSMEIAIQ 565
>pdb|2FDC|A Chain A, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
pdb|2FDC|B Chain B, Structural Basis Of Dna Damage Recognition And Processing
By Uvrb: Crystal Structure Of A UvrbDNA COMPLEX
Length = 658
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 692 VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQ 750
++VRP + L+ + E E+ + + +K D LK G LH
Sbjct: 422 IDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKT 481
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR----VGRTG 806
+R I D + ++L+ ++ GLD+ E+ LV DA E ++ + G
Sbjct: 482 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK--EGFLRSERSLIQTIG 539
Query: 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838
RA R + Y+ + K++E++ Q
Sbjct: 540 RAARNANGHVIM------YADTITKSMEIAIQ 565
>pdb|1D9X|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb
Length = 658
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 692 VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQ 750
++VRP + L+ + E E+ + + +K D LK G LH
Sbjct: 422 IDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKT 481
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR----VGRTG 806
+R I D + ++L+ ++ GLD+ E+ LV DA E ++ + G
Sbjct: 482 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK--EGFLRSERSLIQTIG 539
Query: 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838
RA R + Y+ + K++E++ Q
Sbjct: 540 RAARNANGHVIM------YADTITKSMEIAIQ 565
>pdb|1D9Z|A Chain A, Crystal Structure Of The Dna Repair Protein Uvrb In
Complex With Atp
Length = 657
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 13/152 (8%)
Query: 692 VEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQ 750
++VRP + L+ + E E+ + + +K D LK G LH
Sbjct: 421 IDVRPTKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKT 480
Query: 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHR----VGRTG 806
+R I D + ++L+ ++ GLD+ E+ LV DA E ++ + G
Sbjct: 481 LERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADK--EGFLRSERSLIQTIG 538
Query: 807 RAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838
RA R + Y+ + K++E++ Q
Sbjct: 539 RAARNANGHVIM------YADTITKSMEIAIQ 564
>pdb|3IQY|A Chain A, Active Site Mutants Of B. Subtilis Seca
Length = 841
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 71/165 (43%), Gaps = 12/165 (7%)
Query: 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGK-ILIFVHSQE 725
R + N V R VV D L+ R +F + E + + Y G+ +L+ + E
Sbjct: 382 RNIYNMQVVTIPTNRPVVRDDRPDLI-YRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVE 440
Query: 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD------ 779
+ + + L G P L+ AK+ +RE+ I + + IAT++A +G D
Sbjct: 441 TSELISKLLKNKGIPHQVLN-AKNH-EREAQIIEEAGQKGAVTIATNMAGKGTDIKLGEG 498
Query: 780 VKELELVINFDAPNHYEDYVHRV--GRTGRAGRKGCAITFISEED 822
VKEL + H + GR+GR G G ++S ED
Sbjct: 499 VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 543
>pdb|3V4R|A Chain A, Crystal Structure Of A Uvrb Dimer-Dna Complex
pdb|3V4R|B Chain B, Crystal Structure Of A Uvrb Dimer-Dna Complex
Length = 667
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKD 749
L++VRP + L+ + E+ + ++ +K D LK G LH
Sbjct: 427 LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK 486
Query: 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA 791
+R I D + ++L+ ++ GLD+ E+ LV DA
Sbjct: 487 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 528
>pdb|2D7D|A Chain A, Structural Insights Into The Cryptic Dna Dependent Atp-Ase
Activity Of Uvrb
pdb|2NMV|A Chain A, Damage Detection By The Uvrabc Pathway: Crystal Structure
Of Uvrb Bound To Fluorescein-Adducted Dna
Length = 661
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKD 749
L++VRP + L+ + E+ + ++ +K D LK G LH
Sbjct: 421 LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK 480
Query: 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA 791
+R I D + ++L+ ++ GLD+ E+ LV DA
Sbjct: 481 TLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDA 522
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,962,664
Number of Sequences: 62578
Number of extensions: 876434
Number of successful extensions: 2388
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 2112
Number of HSP's gapped (non-prelim): 154
length of query: 976
length of database: 14,973,337
effective HSP length: 108
effective length of query: 868
effective length of database: 8,214,913
effective search space: 7130544484
effective search space used: 7130544484
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)