Query 002040
Match_columns 976
No_of_seqs 826 out of 5236
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 15:09:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0334 RNA helicase [RNA proc 100.0 3E-101 6E-106 897.0 54.6 732 201-976 139-997 (997)
2 KOG0339 ATP-dependent RNA heli 100.0 9.2E-83 2E-87 680.4 34.4 441 407-850 163-604 (731)
3 KOG0331 ATP-dependent RNA heli 100.0 1.4E-75 3.1E-80 653.6 34.9 427 422-851 16-478 (519)
4 KOG0336 ATP-dependent RNA heli 100.0 3.3E-73 7.1E-78 592.7 32.6 436 416-855 161-606 (629)
5 KOG0333 U5 snRNP-like RNA heli 100.0 4.1E-71 8.8E-76 595.0 35.3 407 435-845 213-649 (673)
6 KOG0341 DEAD-box protein abstr 100.0 1.6E-72 3.4E-77 583.9 19.0 452 422-878 125-587 (610)
7 PTZ00110 helicase; Provisional 100.0 3E-69 6.6E-74 637.9 49.7 436 413-851 75-514 (545)
8 KOG0330 ATP-dependent RNA heli 100.0 6E-68 1.3E-72 553.2 31.8 365 465-837 59-423 (476)
9 PLN00206 DEAD-box ATP-dependen 100.0 9.3E-65 2E-69 598.3 46.4 433 412-848 64-502 (518)
10 COG0513 SrmB Superfamily II DN 100.0 1.3E-62 2.8E-67 575.7 41.2 363 467-836 29-396 (513)
11 KOG0338 ATP-dependent RNA heli 100.0 1.9E-63 4.2E-68 533.4 30.2 383 466-853 180-570 (691)
12 KOG0335 ATP-dependent RNA heli 100.0 6.5E-63 1.4E-67 542.1 31.4 391 455-848 62-471 (482)
13 KOG0328 Predicted ATP-dependen 100.0 1.1E-61 2.5E-66 485.1 26.7 375 461-844 21-396 (400)
14 KOG0342 ATP-dependent RNA heli 100.0 3.4E-60 7.3E-65 510.0 32.3 373 465-841 80-456 (543)
15 KOG0340 ATP-dependent RNA heli 100.0 5.8E-60 1.2E-64 487.9 28.1 366 466-836 6-376 (442)
16 PRK04837 ATP-dependent RNA hel 100.0 2.6E-58 5.7E-63 534.0 40.9 368 466-837 7-378 (423)
17 KOG0345 ATP-dependent RNA heli 100.0 8.6E-59 1.9E-63 495.1 33.5 359 467-827 4-370 (567)
18 KOG0326 ATP-dependent RNA heli 100.0 5.2E-60 1.1E-64 480.4 19.3 368 467-844 85-452 (459)
19 KOG0343 RNA Helicase [RNA proc 100.0 1.3E-58 2.8E-63 500.3 30.5 364 464-832 66-434 (758)
20 PRK11634 ATP-dependent RNA hel 100.0 3.5E-57 7.6E-62 539.1 44.6 363 466-837 5-368 (629)
21 PRK04537 ATP-dependent RNA hel 100.0 1.7E-57 3.7E-62 539.4 41.6 368 466-836 8-379 (572)
22 PRK10590 ATP-dependent RNA hel 100.0 3.3E-57 7.1E-62 528.1 41.3 365 468-836 2-367 (456)
23 PRK11776 ATP-dependent RNA hel 100.0 7.4E-57 1.6E-61 527.5 41.5 359 467-835 4-363 (460)
24 KOG0348 ATP-dependent RNA heli 100.0 9.5E-57 2.1E-61 484.7 29.4 367 464-832 133-565 (708)
25 PRK11192 ATP-dependent RNA hel 100.0 3.2E-55 7E-60 510.6 42.5 362 468-834 2-365 (434)
26 KOG0347 RNA helicase [RNA proc 100.0 8.6E-57 1.9E-61 486.3 22.3 373 463-837 177-586 (731)
27 KOG0346 RNA helicase [RNA proc 100.0 4.2E-55 9E-60 462.5 30.0 367 467-835 19-424 (569)
28 PRK01297 ATP-dependent RNA hel 100.0 8.2E-54 1.8E-58 503.0 43.2 369 465-837 85-458 (475)
29 PTZ00424 helicase 45; Provisio 100.0 2.4E-52 5.3E-57 482.8 40.2 368 465-841 26-394 (401)
30 KOG0344 ATP-dependent RNA heli 100.0 9E-52 2E-56 455.7 26.4 401 446-848 111-522 (593)
31 KOG0337 ATP-dependent RNA heli 100.0 2.6E-52 5.6E-57 439.6 19.6 363 466-835 20-382 (529)
32 KOG0332 ATP-dependent RNA heli 100.0 6E-51 1.3E-55 423.2 28.9 374 462-846 85-470 (477)
33 KOG0327 Translation initiation 100.0 1.2E-50 2.5E-55 426.4 24.2 367 466-843 25-392 (397)
34 KOG4284 DEAD box protein [Tran 100.0 3.4E-50 7.4E-55 440.8 22.7 352 462-823 20-381 (980)
35 KOG0350 DEAD-box ATP-dependent 100.0 7.1E-49 1.5E-53 421.5 28.4 361 475-842 145-565 (620)
36 TIGR03817 DECH_helic helicase/ 100.0 3.8E-47 8.1E-52 461.8 39.4 347 473-834 20-401 (742)
37 PLN03137 ATP-dependent DNA hel 100.0 1.8E-46 4E-51 449.6 37.6 345 468-830 436-796 (1195)
38 TIGR00580 mfd transcription-re 100.0 2.7E-45 5.9E-50 448.5 35.7 367 476-896 438-818 (926)
39 PRK10689 transcription-repair 100.0 3.7E-45 8E-50 456.6 36.0 365 478-896 590-967 (1147)
40 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-44 3.1E-49 423.1 37.6 328 484-831 6-343 (470)
41 PRK11057 ATP-dependent DNA hel 100.0 6.3E-43 1.4E-47 419.5 37.9 328 479-830 14-352 (607)
42 KOG0924 mRNA splicing factor A 100.0 1.3E-44 2.7E-49 398.8 19.6 497 248-821 169-697 (1042)
43 PRK10917 ATP-dependent DNA hel 100.0 8.5E-43 1.8E-47 422.5 37.5 360 479-897 252-633 (681)
44 TIGR00643 recG ATP-dependent D 100.0 3.5E-42 7.7E-47 414.7 36.0 363 477-897 224-610 (630)
45 PRK13767 ATP-dependent helicas 100.0 1E-41 2.2E-46 422.6 40.5 343 474-820 18-397 (876)
46 PRK02362 ski2-like helicase; P 100.0 5.3E-42 1.1E-46 421.8 35.8 335 468-821 2-397 (737)
47 TIGR01389 recQ ATP-dependent D 100.0 5.5E-42 1.2E-46 412.9 35.2 326 481-830 4-340 (591)
48 TIGR02621 cas3_GSU0051 CRISPR- 100.0 7.3E-42 1.6E-46 405.9 35.0 317 485-820 12-390 (844)
49 PRK00254 ski2-like helicase; P 100.0 8.3E-41 1.8E-45 410.2 35.7 338 468-822 2-389 (720)
50 KOG0329 ATP-dependent RNA heli 100.0 3.5E-42 7.7E-47 340.2 14.0 334 466-843 41-378 (387)
51 PRK01172 ski2-like helicase; P 100.0 1.2E-38 2.6E-43 389.7 34.8 331 468-821 2-378 (674)
52 PHA02653 RNA helicase NPH-II; 100.0 1.5E-38 3.2E-43 376.9 31.9 310 492-822 167-515 (675)
53 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.1E-38 4.5E-43 384.5 32.4 303 493-822 6-337 (819)
54 PRK11664 ATP-dependent RNA hel 100.0 6.6E-38 1.4E-42 381.2 30.8 305 493-822 9-340 (812)
55 PRK09401 reverse gyrase; Revie 100.0 1.1E-37 2.4E-42 390.5 33.1 296 485-806 77-429 (1176)
56 KOG0349 Putative DEAD-box RNA 100.0 2.5E-39 5.5E-44 340.6 15.4 317 541-860 287-686 (725)
57 COG1200 RecG RecG-like helicas 100.0 1.6E-37 3.5E-42 352.4 31.0 362 479-899 253-637 (677)
58 COG0514 RecQ Superfamily II DN 100.0 1.6E-37 3.4E-42 354.7 30.2 329 480-832 7-348 (590)
59 COG1201 Lhr Lhr-like helicases 100.0 4.1E-37 8.8E-42 363.5 33.7 340 474-820 8-361 (814)
60 PRK12898 secA preprotein trans 100.0 4.3E-37 9.4E-42 358.2 31.4 322 485-823 100-588 (656)
61 PRK09751 putative ATP-dependen 100.0 8.4E-37 1.8E-41 382.4 36.1 307 509-819 1-383 (1490)
62 PRK14701 reverse gyrase; Provi 100.0 8E-37 1.7E-41 389.7 30.9 322 478-823 68-458 (1638)
63 COG1197 Mfd Transcription-repa 100.0 1.5E-36 3.2E-41 362.3 30.5 361 483-897 589-962 (1139)
64 COG1111 MPH1 ERCC4-like helica 100.0 4E-35 8.6E-40 319.4 32.9 323 487-822 13-482 (542)
65 TIGR01587 cas3_core CRISPR-ass 100.0 9.3E-36 2E-40 338.8 27.0 304 506-823 1-338 (358)
66 PHA02558 uvsW UvsW helicase; P 100.0 2.6E-35 5.7E-40 346.6 30.9 301 487-812 112-443 (501)
67 PRK09200 preprotein translocas 100.0 3.5E-35 7.6E-40 349.3 32.1 325 484-824 74-544 (790)
68 TIGR03714 secA2 accessory Sec 100.0 6.6E-35 1.4E-39 343.5 31.7 321 491-824 70-540 (762)
69 TIGR01054 rgy reverse gyrase. 100.0 7E-35 1.5E-39 365.9 33.5 290 480-794 69-410 (1171)
70 TIGR00963 secA preprotein tran 100.0 2.2E-34 4.8E-39 336.8 30.6 323 485-824 53-520 (745)
71 COG1202 Superfamily II helicas 100.0 2E-34 4.3E-39 314.2 26.5 338 468-821 195-553 (830)
72 PRK13766 Hef nuclease; Provisi 100.0 3.7E-33 7.9E-38 347.9 37.3 323 487-822 13-480 (773)
73 PRK11131 ATP-dependent RNA hel 100.0 1.2E-33 2.6E-38 348.0 30.9 302 492-822 77-412 (1294)
74 KOG0352 ATP-dependent DNA heli 100.0 2.7E-33 5.8E-38 295.4 23.0 334 478-832 7-373 (641)
75 COG1204 Superfamily II helicas 100.0 1.3E-32 2.9E-37 330.5 29.7 332 473-819 15-406 (766)
76 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.8E-33 1.3E-37 343.5 27.0 303 495-822 73-405 (1283)
77 KOG0351 ATP-dependent DNA heli 100.0 6.4E-33 1.4E-37 334.6 26.6 332 481-831 256-602 (941)
78 TIGR03158 cas3_cyano CRISPR-as 100.0 5.4E-32 1.2E-36 304.9 32.3 292 493-806 1-357 (357)
79 KOG0354 DEAD-box like helicase 100.0 1.6E-32 3.5E-37 316.4 27.7 320 488-820 61-528 (746)
80 TIGR00603 rad25 DNA repair hel 100.0 1.7E-31 3.7E-36 314.9 30.6 309 488-823 254-609 (732)
81 COG1205 Distinct helicase fami 100.0 3.5E-31 7.6E-36 322.8 32.9 336 475-819 56-420 (851)
82 PRK04914 ATP-dependent helicas 100.0 2.7E-30 5.8E-35 315.2 36.9 332 489-834 152-616 (956)
83 KOG0952 DNA/RNA helicase MER3/ 100.0 9.6E-31 2.1E-35 303.3 28.5 362 484-857 105-524 (1230)
84 KOG0353 ATP-dependent DNA heli 100.0 1.5E-30 3.3E-35 270.3 21.7 337 471-823 75-469 (695)
85 KOG0922 DEAH-box RNA helicase 100.0 1.2E-29 2.6E-34 285.2 26.3 309 492-823 54-392 (674)
86 KOG0923 mRNA splicing factor A 100.0 4.4E-30 9.5E-35 284.3 20.9 309 491-821 267-606 (902)
87 PRK05580 primosome assembly pr 100.0 8.2E-29 1.8E-33 299.3 33.0 309 489-820 144-548 (679)
88 PRK12899 secA preprotein trans 100.0 2.2E-28 4.7E-33 289.0 32.0 183 436-630 32-228 (970)
89 PRK13104 secA preprotein trans 100.0 2.3E-28 5E-33 289.9 32.0 321 485-824 79-590 (896)
90 COG1643 HrpA HrpA-like helicas 100.0 1.6E-28 3.4E-33 293.3 29.7 322 492-845 53-402 (845)
91 PRK09694 helicase Cas3; Provis 100.0 2.2E-27 4.9E-32 288.1 36.3 313 486-810 283-664 (878)
92 PRK12906 secA preprotein trans 100.0 1.2E-27 2.5E-32 282.9 30.8 323 485-824 77-556 (796)
93 PRK12904 preprotein translocas 100.0 1.4E-27 3.1E-32 283.3 30.4 323 485-824 78-576 (830)
94 PLN03142 Probable chromatin-re 100.0 2.5E-27 5.4E-32 290.0 31.5 317 489-821 169-599 (1033)
95 cd00268 DEADc DEAD-box helicas 100.0 1.3E-27 2.8E-32 249.5 24.5 202 469-676 1-202 (203)
96 KOG0951 RNA helicase BRR2, DEA 100.0 1.7E-27 3.6E-32 279.2 25.9 362 485-858 305-736 (1674)
97 COG1061 SSL2 DNA or RNA helica 100.0 3.1E-27 6.7E-32 272.7 27.3 298 488-813 35-382 (442)
98 TIGR00595 priA primosomal prot 100.0 5.3E-27 1.1E-31 273.8 28.3 288 508-818 1-378 (505)
99 KOG0385 Chromatin remodeling c 100.0 8.9E-27 1.9E-31 262.5 25.5 314 489-821 167-599 (971)
100 PRK13107 preprotein translocas 99.9 1E-25 2.3E-30 266.3 28.6 322 485-823 79-593 (908)
101 KOG0947 Cytoplasmic exosomal R 99.9 9.5E-26 2.1E-30 258.9 24.7 324 483-831 292-732 (1248)
102 PRK11448 hsdR type I restricti 99.9 2E-25 4.4E-30 278.8 29.1 306 488-809 412-801 (1123)
103 KOG0926 DEAH-box RNA helicase 99.9 3.3E-26 7.2E-31 257.8 19.6 307 494-820 261-703 (1172)
104 COG4098 comFA Superfamily II D 99.9 1.8E-24 4E-29 224.2 29.0 299 489-818 97-413 (441)
105 KOG0384 Chromodomain-helicase 99.9 3.5E-26 7.6E-31 269.5 18.1 373 426-821 310-811 (1373)
106 KOG0920 ATP-dependent RNA heli 99.9 1.5E-24 3.2E-29 257.6 26.0 313 490-821 174-544 (924)
107 COG4581 Superfamily II RNA hel 99.9 2.9E-24 6.4E-29 257.7 27.4 315 483-820 114-536 (1041)
108 KOG0948 Nuclear exosomal RNA h 99.9 3.1E-25 6.7E-30 248.8 16.7 308 489-821 129-539 (1041)
109 KOG0387 Transcription-coupled 99.9 4.7E-24 1E-28 242.1 24.1 328 489-832 205-672 (923)
110 KOG0925 mRNA splicing factor A 99.9 2.7E-23 5.9E-28 223.4 22.4 329 465-821 23-387 (699)
111 PF00270 DEAD: DEAD/DEAH box h 99.9 2.2E-23 4.7E-28 210.8 18.9 165 491-664 1-168 (169)
112 KOG0950 DNA polymerase theta/e 99.9 1.2E-23 2.6E-28 244.2 18.5 348 469-831 203-621 (1008)
113 PRK12900 secA preprotein trans 99.9 5.7E-22 1.2E-26 235.4 25.9 128 695-824 578-714 (1025)
114 TIGR00631 uvrb excinuclease AB 99.9 5.7E-21 1.2E-25 228.3 31.2 130 695-825 422-557 (655)
115 KOG2340 Uncharacterized conser 99.9 8.8E-23 1.9E-27 221.9 14.2 346 486-832 213-679 (698)
116 COG1203 CRISPR-associated heli 99.9 9.8E-22 2.1E-26 240.2 24.3 337 489-832 195-561 (733)
117 KOG0392 SNF2 family DNA-depend 99.9 1.3E-21 2.8E-26 230.0 23.6 321 489-820 975-1453(1549)
118 PRK12326 preprotein translocas 99.9 1.1E-20 2.4E-25 218.8 30.2 321 485-823 75-549 (764)
119 KOG1002 Nucleotide excision re 99.9 2.3E-21 4.9E-26 208.7 20.8 124 698-821 619-749 (791)
120 COG0556 UvrB Helicase subunit 99.9 3.4E-20 7.4E-25 202.9 29.6 189 649-845 387-590 (663)
121 COG1110 Reverse gyrase [DNA re 99.9 1.6E-20 3.6E-25 219.1 28.3 280 485-792 79-416 (1187)
122 KOG0389 SNF2 family DNA-depend 99.9 5.8E-21 1.3E-25 216.8 22.6 318 490-821 400-888 (941)
123 KOG0390 DNA repair protein, SN 99.9 2.8E-20 6.1E-25 218.0 28.3 320 489-818 238-702 (776)
124 PRK13103 secA preprotein trans 99.9 8.9E-20 1.9E-24 216.5 28.7 322 485-824 79-594 (913)
125 TIGR01407 dinG_rel DnaQ family 99.9 3.3E-19 7.1E-24 222.7 34.7 342 476-834 233-829 (850)
126 TIGR00348 hsdR type I site-spe 99.9 1E-19 2.3E-24 220.2 27.8 301 490-808 239-634 (667)
127 COG1198 PriA Primosomal protei 99.8 4.7E-19 1E-23 209.5 31.2 309 488-819 197-601 (730)
128 PRK05298 excinuclease ABC subu 99.8 5.2E-19 1.1E-23 213.3 31.1 148 697-845 428-590 (652)
129 PF06862 DUF1253: Protein of u 99.8 2.8E-19 6E-24 200.0 25.7 293 539-832 36-426 (442)
130 KOG1000 Chromatin remodeling p 99.8 1.2E-18 2.5E-23 188.5 26.2 312 488-819 197-599 (689)
131 PRK12903 secA preprotein trans 99.8 2.8E-18 6.1E-23 201.4 30.8 322 485-824 75-542 (925)
132 COG4096 HsdR Type I site-speci 99.8 2.9E-19 6.3E-24 206.3 22.0 298 488-808 164-525 (875)
133 KOG1123 RNA polymerase II tran 99.8 3.7E-19 8E-24 192.2 17.8 310 488-823 301-655 (776)
134 smart00487 DEXDc DEAD-like hel 99.8 2.2E-18 4.8E-23 178.1 21.3 188 484-680 3-192 (201)
135 KOG0386 Chromatin remodeling c 99.8 2.2E-19 4.7E-24 208.8 12.9 322 489-831 394-846 (1157)
136 KOG0391 SNF2 family DNA-depend 99.8 7.1E-18 1.5E-22 196.4 24.4 121 701-821 1262-1387(1958)
137 PRK07246 bifunctional ATP-depe 99.8 8.7E-17 1.9E-21 198.0 33.9 329 485-835 242-799 (820)
138 CHL00122 secA preprotein trans 99.8 2.5E-17 5.4E-22 195.0 26.8 280 485-781 73-491 (870)
139 KOG0949 Predicted helicase, DE 99.8 2.6E-17 5.7E-22 190.3 23.8 163 489-661 511-674 (1330)
140 KOG0388 SNF2 family DNA-depend 99.8 1.7E-17 3.7E-22 185.4 19.1 124 697-820 1026-1153(1185)
141 PRK12902 secA preprotein trans 99.7 9E-16 1.9E-20 181.3 30.7 279 485-781 82-506 (939)
142 COG4889 Predicted helicase [Ge 99.7 5.5E-18 1.2E-22 193.0 11.3 325 468-808 141-572 (1518)
143 KOG4150 Predicted ATP-dependen 99.7 8.3E-17 1.8E-21 176.1 17.3 345 480-834 277-655 (1034)
144 cd00079 HELICc Helicase superf 99.7 6.5E-17 1.4E-21 155.7 14.3 120 698-817 11-131 (131)
145 PRK08074 bifunctional ATP-depe 99.7 3.9E-15 8.5E-20 186.9 31.0 133 702-834 738-908 (928)
146 TIGR03117 cas_csf4 CRISPR-asso 99.7 1.3E-14 2.7E-19 171.1 31.9 107 713-821 469-616 (636)
147 KOG4439 RNA polymerase II tran 99.7 3E-15 6.5E-20 168.6 19.6 121 697-817 727-852 (901)
148 KOG0953 Mitochondrial RNA heli 99.7 1.5E-15 3.3E-20 167.2 16.0 266 505-820 192-476 (700)
149 PF00271 Helicase_C: Helicase 99.6 4.5E-16 9.8E-21 135.5 8.7 78 732-809 1-78 (78)
150 PRK12901 secA preprotein trans 99.6 1.5E-14 3.2E-19 172.6 22.4 129 694-824 607-744 (1112)
151 cd00046 DEXDc DEAD-like helica 99.6 1.1E-14 2.4E-19 141.4 16.5 144 505-658 1-144 (144)
152 COG0553 HepA Superfamily II DN 99.6 7.2E-14 1.6E-18 178.3 26.5 121 699-819 692-818 (866)
153 KOG1015 Transcription regulato 99.6 3E-14 6.4E-19 164.1 20.0 119 700-818 1127-1272(1567)
154 KOG0951 RNA helicase BRR2, DEA 99.6 1.7E-14 3.7E-19 171.1 16.4 311 491-828 1145-1501(1674)
155 PF04851 ResIII: Type III rest 99.6 1E-14 2.2E-19 149.3 11.6 156 489-660 3-184 (184)
156 TIGR00604 rad3 DNA repair heli 99.6 1.8E-12 3.9E-17 159.4 32.2 74 485-563 6-83 (705)
157 COG1199 DinG Rad3-related DNA 99.6 1.7E-12 3.7E-17 159.6 31.6 117 701-820 464-616 (654)
158 PRK11747 dinG ATP-dependent DN 99.6 3.3E-12 7.1E-17 155.8 33.0 116 714-833 534-688 (697)
159 PRK14873 primosome assembly pr 99.5 1.3E-12 2.9E-17 156.2 25.6 272 511-818 167-536 (665)
160 TIGR02562 cas3_yersinia CRISPR 99.5 5.5E-13 1.2E-17 160.3 22.0 313 488-810 407-881 (1110)
161 smart00490 HELICc helicase sup 99.5 1.3E-13 2.9E-18 120.7 8.7 81 729-809 2-82 (82)
162 COG0610 Type I site-specific r 99.4 4.9E-11 1.1E-15 149.1 29.5 308 505-834 274-661 (962)
163 KOG0921 Dosage compensation co 99.4 1.3E-12 2.9E-17 150.6 12.2 307 495-819 384-772 (1282)
164 PF02399 Herpes_ori_bp: Origin 99.4 5.3E-11 1.2E-15 140.2 24.8 326 506-859 51-434 (824)
165 COG0653 SecA Preprotein transl 99.3 9.4E-11 2E-15 139.1 19.1 316 492-822 81-546 (822)
166 PF00176 SNF2_N: SNF2 family N 99.3 1.8E-11 3.9E-16 135.8 11.4 161 493-660 1-174 (299)
167 PF07652 Flavi_DEAD: Flaviviru 99.2 6.7E-11 1.4E-15 111.6 8.8 135 504-662 4-140 (148)
168 KOG1016 Predicted DNA helicase 99.1 3.4E-09 7.4E-14 120.8 20.2 115 715-829 720-855 (1387)
169 PF07517 SecA_DEAD: SecA DEAD- 99.0 1.3E-08 2.8E-13 108.4 17.5 133 485-630 74-210 (266)
170 PRK15483 type III restriction- 99.0 2.2E-07 4.7E-12 113.4 29.1 73 764-836 501-583 (986)
171 smart00489 DEXDc3 DEAD-like he 99.0 5.9E-09 1.3E-13 114.1 14.5 76 485-563 5-84 (289)
172 smart00488 DEXDc2 DEAD-like he 99.0 5.9E-09 1.3E-13 114.1 14.5 76 485-563 5-84 (289)
173 KOG1001 Helicase-like transcri 98.7 1.4E-07 3E-12 112.8 12.6 118 699-816 522-643 (674)
174 TIGR00596 rad1 DNA repair prot 98.5 1.6E-06 3.5E-11 106.0 17.7 68 589-659 6-73 (814)
175 COG3587 Restriction endonuclea 98.5 9.6E-06 2.1E-10 95.4 21.2 74 763-836 482-568 (985)
176 KOG0952 DNA/RNA helicase MER3/ 98.4 1.3E-07 2.8E-12 112.6 2.1 260 490-766 928-1207(1230)
177 KOG1802 RNA helicase nonsense 98.2 1.6E-05 3.4E-10 90.8 14.8 84 481-575 402-485 (935)
178 KOG1131 RNA polymerase II tran 98.2 0.00025 5.4E-09 79.2 23.6 149 714-863 530-730 (755)
179 PF13086 AAA_11: AAA domain; P 98.2 1.1E-05 2.5E-10 85.6 13.2 72 490-562 2-75 (236)
180 PF13872 AAA_34: P-loop contai 98.2 9.3E-06 2E-10 86.8 11.2 173 471-662 25-224 (303)
181 PF02562 PhoH: PhoH-like prote 98.1 5.5E-06 1.2E-10 84.9 7.7 146 488-657 3-155 (205)
182 PF13604 AAA_30: AAA domain; P 98.1 1.2E-05 2.7E-10 83.0 9.2 125 490-657 2-130 (196)
183 KOG0383 Predicted helicase [Ge 98.1 7.8E-07 1.7E-11 105.0 0.1 79 698-777 614-696 (696)
184 TIGR00376 DNA helicase, putati 98.1 0.0002 4.4E-09 86.9 20.5 67 488-562 156-223 (637)
185 PF13307 Helicase_C_2: Helicas 98.0 1.9E-05 4.2E-10 79.3 8.8 105 714-820 9-149 (167)
186 PF12340 DUF3638: Protein of u 98.0 9.5E-05 2.1E-09 76.5 13.7 154 468-631 4-186 (229)
187 PRK10536 hypothetical protein; 98.0 0.00012 2.6E-09 77.2 13.9 143 485-655 55-210 (262)
188 TIGR01447 recD exodeoxyribonuc 97.8 0.00015 3.3E-09 86.7 13.1 146 491-657 147-295 (586)
189 PRK10875 recD exonuclease V su 97.8 0.00015 3.3E-09 87.0 11.8 146 490-657 153-301 (615)
190 PF09848 DUF2075: Uncharacteri 97.7 0.00014 3.1E-09 82.5 9.5 108 506-644 3-117 (352)
191 KOG1803 DNA helicase [Replicat 97.6 0.00015 3.2E-09 83.0 8.8 65 488-560 184-249 (649)
192 TIGR01448 recD_rel helicase, p 97.6 0.0004 8.8E-09 85.6 13.4 131 488-657 322-452 (720)
193 PRK12723 flagellar biosynthesi 97.6 0.0017 3.7E-08 73.6 17.1 171 504-724 174-349 (388)
194 KOG1132 Helicase of the DEAD s 97.6 0.00034 7.5E-09 83.2 10.7 76 489-564 21-134 (945)
195 COG3421 Uncharacterized protei 97.5 0.00038 8.2E-09 79.2 10.3 146 509-661 2-168 (812)
196 KOG1805 DNA replication helica 97.4 0.00069 1.5E-08 81.3 11.1 145 463-630 647-809 (1100)
197 COG1419 FlhF Flagellar GTP-bin 97.4 0.0041 8.9E-08 69.4 16.3 174 502-725 201-376 (407)
198 PF13245 AAA_19: Part of AAA d 97.3 0.00088 1.9E-08 57.5 7.6 53 504-560 10-62 (76)
199 PRK08181 transposase; Validate 97.3 0.0035 7.6E-08 67.7 14.0 110 500-661 102-212 (269)
200 PRK13889 conjugal transfer rel 97.3 0.0017 3.7E-08 81.5 12.7 123 489-657 346-470 (988)
201 PRK14722 flhF flagellar biosyn 97.3 0.0029 6.2E-08 71.2 13.1 178 503-725 136-319 (374)
202 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0032 6.9E-08 78.1 14.7 124 488-657 351-476 (744)
203 PRK06526 transposase; Provisio 97.2 0.0021 4.5E-08 69.0 11.3 29 498-526 92-120 (254)
204 PRK05703 flhF flagellar biosyn 97.2 0.014 2.9E-07 67.6 18.1 170 503-725 220-395 (424)
205 PRK14974 cell division protein 97.2 0.0043 9.3E-08 69.1 13.5 132 505-670 141-276 (336)
206 PRK11889 flhF flagellar biosyn 97.2 0.011 2.4E-07 66.1 16.2 169 504-724 241-414 (436)
207 PRK11773 uvrD DNA-dependent he 97.2 0.024 5.2E-07 70.7 21.0 71 489-565 9-79 (721)
208 PF13401 AAA_22: AAA domain; P 97.1 0.00096 2.1E-08 63.9 6.7 21 504-524 4-24 (131)
209 PF00448 SRP54: SRP54-type pro 97.1 0.0037 7.9E-08 64.4 11.0 172 506-725 3-178 (196)
210 PF00580 UvrD-helicase: UvrD/R 97.1 0.0029 6.4E-08 70.4 11.2 125 490-627 1-125 (315)
211 PRK04296 thymidine kinase; Pro 97.1 0.0013 2.7E-08 67.7 7.4 109 505-657 3-114 (190)
212 COG1875 NYN ribonuclease and A 97.0 0.0034 7.4E-08 68.2 10.0 144 484-656 223-386 (436)
213 TIGR01073 pcrA ATP-dependent D 97.0 0.04 8.7E-07 68.9 20.8 71 489-565 4-74 (726)
214 PF13871 Helicase_C_4: Helicas 97.0 0.002 4.4E-08 69.0 7.7 81 755-835 52-144 (278)
215 KOG0298 DEAD box-containing he 96.9 0.0015 3.2E-08 80.7 7.2 158 503-665 373-557 (1394)
216 PRK13826 Dtr system oriT relax 96.9 0.0097 2.1E-07 75.4 14.3 124 488-657 380-505 (1102)
217 TIGR01074 rep ATP-dependent DN 96.9 0.058 1.2E-06 66.9 21.2 70 490-565 2-71 (664)
218 PF05970 PIF1: PIF1-like helic 96.9 0.0032 6.9E-08 71.7 8.8 59 490-556 2-66 (364)
219 TIGR02760 TraI_TIGR conjugativ 96.9 0.042 9.2E-07 74.9 20.6 210 489-736 429-648 (1960)
220 PRK08116 hypothetical protein; 96.8 0.023 5E-07 61.7 14.4 48 615-663 176-226 (268)
221 PRK06835 DNA replication prote 96.8 0.018 4E-07 64.1 13.8 48 615-662 244-293 (329)
222 smart00492 HELICc3 helicase su 96.8 0.0098 2.1E-07 57.7 10.1 78 742-819 25-136 (141)
223 PRK12727 flagellar biosynthesi 96.7 0.056 1.2E-06 63.0 17.5 170 503-725 349-522 (559)
224 PRK06921 hypothetical protein; 96.7 0.02 4.4E-07 62.0 13.2 27 503-530 116-142 (266)
225 cd00009 AAA The AAA+ (ATPases 96.7 0.012 2.7E-07 56.7 10.3 25 504-529 19-43 (151)
226 PRK12726 flagellar biosynthesi 96.6 0.049 1.1E-06 60.9 15.2 24 503-526 205-228 (407)
227 PRK07952 DNA replication prote 96.6 0.022 4.7E-07 60.7 11.9 48 615-662 160-209 (244)
228 smart00491 HELICc2 helicase su 96.4 0.015 3.2E-07 56.6 9.0 93 727-819 4-137 (142)
229 PF14617 CMS1: U3-containing 9 96.4 0.0061 1.3E-07 64.6 6.7 86 538-627 124-211 (252)
230 PRK14723 flhF flagellar biosyn 96.4 0.027 5.9E-07 68.6 12.9 23 504-526 185-207 (767)
231 PF03354 Terminase_1: Phage Te 96.4 0.0089 1.9E-07 70.7 8.4 151 492-655 1-160 (477)
232 PRK06731 flhF flagellar biosyn 96.4 0.15 3.2E-06 55.2 16.9 170 503-724 74-248 (270)
233 PHA02533 17 large terminase pr 96.3 0.027 5.8E-07 67.0 11.7 148 489-658 59-210 (534)
234 TIGR01547 phage_term_2 phage t 96.3 0.015 3.4E-07 67.1 9.5 145 506-670 3-152 (396)
235 PRK12724 flagellar biosynthesi 96.2 0.13 2.9E-06 58.5 16.3 167 504-724 223-396 (432)
236 smart00382 AAA ATPases associa 96.2 0.015 3.2E-07 55.6 7.5 19 504-522 2-20 (148)
237 PRK14721 flhF flagellar biosyn 96.2 0.085 1.8E-06 60.5 14.7 173 503-725 190-364 (420)
238 PRK12377 putative replication 96.2 0.037 8E-07 59.1 10.9 47 615-661 161-209 (248)
239 COG2805 PilT Tfp pilus assembl 96.2 0.0073 1.6E-07 64.2 5.3 53 460-532 99-152 (353)
240 KOG0670 U4/U6-associated splic 96.1 0.025 5.4E-07 64.0 9.5 47 516-574 492-538 (752)
241 PRK09183 transposase/IS protei 96.1 0.056 1.2E-06 58.4 11.9 26 499-524 97-122 (259)
242 PRK00771 signal recognition pa 96.0 0.07 1.5E-06 61.7 13.2 130 505-669 96-228 (437)
243 PRK06995 flhF flagellar biosyn 96.0 0.15 3.3E-06 59.5 15.8 172 504-725 256-429 (484)
244 cd01120 RecA-like_NTPases RecA 96.0 0.043 9.3E-07 54.2 10.1 20 507-526 2-21 (165)
245 PF01695 IstB_IS21: IstB-like 96.0 0.0072 1.6E-07 61.3 4.4 48 499-555 42-89 (178)
246 PRK05642 DNA replication initi 95.9 0.022 4.9E-07 60.5 8.2 45 616-660 96-141 (234)
247 TIGR01075 uvrD DNA helicase II 95.9 0.02 4.4E-07 71.4 8.9 71 488-564 3-73 (715)
248 cd01124 KaiC KaiC is a circadi 95.8 0.066 1.4E-06 54.6 10.8 48 507-563 2-49 (187)
249 PRK06893 DNA replication initi 95.8 0.025 5.3E-07 60.0 7.8 46 616-661 90-137 (229)
250 PF05127 Helicase_RecD: Helica 95.8 0.0052 1.1E-07 61.5 2.2 124 508-659 1-124 (177)
251 KOG1133 Helicase of the DEAD s 95.7 1.2 2.6E-05 52.7 21.2 122 695-819 608-778 (821)
252 PRK10867 signal recognition pa 95.7 0.13 2.7E-06 59.5 13.4 59 506-574 102-162 (433)
253 COG1484 DnaC DNA replication p 95.7 0.065 1.4E-06 57.6 10.4 51 501-560 102-152 (254)
254 PRK11054 helD DNA helicase IV; 95.6 0.043 9.3E-07 67.3 9.8 73 485-563 192-264 (684)
255 COG1444 Predicted P-loop ATPas 95.6 0.13 2.7E-06 62.4 13.2 149 482-659 207-357 (758)
256 TIGR00064 ftsY signal recognit 95.6 0.17 3.6E-06 55.1 13.1 174 505-725 73-255 (272)
257 PTZ00293 thymidine kinase; Pro 95.6 0.06 1.3E-06 55.5 9.0 38 504-549 4-41 (211)
258 PRK08084 DNA replication initi 95.5 0.047 1E-06 58.1 8.6 18 504-521 45-62 (235)
259 PRK14712 conjugal transfer nic 95.5 0.061 1.3E-06 70.6 11.0 62 489-556 835-900 (1623)
260 TIGR01425 SRP54_euk signal rec 95.5 0.16 3.4E-06 58.4 13.1 131 506-669 102-235 (429)
261 PRK13709 conjugal transfer nic 95.5 0.075 1.6E-06 70.7 11.9 65 488-556 966-1032(1747)
262 KOG0989 Replication factor C, 95.5 0.058 1.3E-06 57.7 8.7 44 614-658 126-169 (346)
263 PHA03333 putative ATPase subun 95.5 0.25 5.4E-06 59.0 14.7 148 488-659 168-333 (752)
264 PRK08727 hypothetical protein; 95.4 0.063 1.4E-06 57.1 9.1 47 616-662 92-140 (233)
265 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.079 1.7E-06 55.9 9.9 20 503-522 37-56 (226)
266 PF05621 TniB: Bacterial TniB 95.4 0.072 1.6E-06 57.7 9.3 114 505-650 62-180 (302)
267 PRK05707 DNA polymerase III su 95.4 0.088 1.9E-06 58.8 10.4 37 490-526 4-44 (328)
268 PRK14087 dnaA chromosomal repl 95.3 0.092 2E-06 61.4 10.8 110 505-662 142-253 (450)
269 PRK08903 DnaA regulatory inact 95.3 0.077 1.7E-06 56.2 9.2 42 618-660 91-133 (227)
270 PRK07003 DNA polymerase III su 95.3 0.089 1.9E-06 63.7 10.4 40 616-657 118-157 (830)
271 PF05496 RuvB_N: Holliday junc 95.3 0.067 1.5E-06 55.4 8.2 16 506-521 52-67 (233)
272 PRK10919 ATP-dependent DNA hel 95.2 0.042 9.1E-07 67.7 7.7 71 489-565 2-72 (672)
273 TIGR00959 ffh signal recogniti 95.2 0.24 5.2E-06 57.2 13.3 60 506-575 101-162 (428)
274 PRK12323 DNA polymerase III su 95.1 0.049 1.1E-06 64.9 7.6 42 615-657 122-163 (700)
275 PRK12422 chromosomal replicati 95.1 0.13 2.8E-06 60.0 11.1 50 616-665 201-252 (445)
276 PRK00149 dnaA chromosomal repl 95.1 0.096 2.1E-06 61.6 10.2 26 505-531 149-174 (450)
277 TIGR03499 FlhF flagellar biosy 95.1 0.14 3.1E-06 56.0 10.8 24 503-526 193-216 (282)
278 PRK10917 ATP-dependent DNA hel 95.1 0.082 1.8E-06 65.4 9.9 94 695-788 290-389 (681)
279 COG0552 FtsY Signal recognitio 95.1 0.46 1E-05 51.9 14.2 130 506-669 141-280 (340)
280 COG2256 MGS1 ATPase related to 95.0 0.085 1.8E-06 58.6 8.7 19 505-523 49-67 (436)
281 PHA02544 44 clamp loader, smal 95.0 0.18 3.8E-06 56.4 11.5 40 617-656 100-139 (316)
282 TIGR00362 DnaA chromosomal rep 94.9 0.1 2.2E-06 60.5 9.7 37 505-547 137-173 (405)
283 PRK08939 primosomal protein Dn 94.9 0.23 4.9E-06 55.0 11.8 26 504-530 156-181 (306)
284 PRK14086 dnaA chromosomal repl 94.9 0.15 3.2E-06 60.9 10.8 48 616-663 376-425 (617)
285 TIGR02785 addA_Gpos recombinat 94.8 0.14 3E-06 67.5 11.5 124 490-628 2-126 (1232)
286 PRK05580 primosome assembly pr 94.8 0.19 4.1E-06 62.1 12.0 93 697-790 172-266 (679)
287 COG1435 Tdk Thymidine kinase [ 94.7 0.25 5.4E-06 49.8 10.3 89 505-628 5-93 (201)
288 PRK11331 5-methylcytosine-spec 94.7 0.093 2E-06 60.2 8.4 33 490-522 180-212 (459)
289 PRK07764 DNA polymerase III su 94.6 0.13 2.8E-06 64.2 9.8 41 616-658 119-159 (824)
290 PRK12402 replication factor C 94.6 0.17 3.7E-06 57.0 10.1 39 616-655 124-162 (337)
291 TIGR01642 U2AF_lg U2 snRNP aux 94.5 0.0045 9.8E-08 74.2 -3.0 10 811-820 492-501 (509)
292 PRK08769 DNA polymerase III su 94.5 0.3 6.5E-06 54.2 11.5 42 488-530 3-51 (319)
293 COG3973 Superfamily I DNA and 94.5 0.17 3.6E-06 58.8 9.6 68 493-562 213-282 (747)
294 COG4626 Phage terminase-like p 94.5 0.24 5.3E-06 57.5 11.0 149 489-656 61-223 (546)
295 TIGR02760 TraI_TIGR conjugativ 94.4 0.17 3.6E-06 69.3 11.1 62 488-556 1018-1084(1960)
296 PF13173 AAA_14: AAA domain 94.4 0.28 6E-06 46.8 9.7 38 617-657 61-98 (128)
297 cd03115 SRP The signal recogni 94.4 0.89 1.9E-05 45.7 14.0 53 617-669 82-135 (173)
298 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.48 1E-05 46.8 11.4 53 615-667 93-147 (159)
299 PRK07994 DNA polymerase III su 94.4 0.42 9.1E-06 57.9 13.1 19 507-525 41-59 (647)
300 PTZ00112 origin recognition co 94.4 0.35 7.6E-06 59.2 12.2 23 507-530 784-806 (1164)
301 PRK14088 dnaA chromosomal repl 94.3 0.34 7.4E-06 56.6 12.1 49 617-665 194-244 (440)
302 TIGR02640 gas_vesic_GvpN gas v 94.3 0.33 7.1E-06 52.7 11.2 28 495-522 12-39 (262)
303 TIGR00643 recG ATP-dependent D 94.3 0.14 3.1E-06 62.8 9.2 92 697-788 266-363 (630)
304 TIGR00595 priA primosomal prot 94.2 0.22 4.7E-06 59.2 10.3 92 697-789 7-100 (505)
305 TIGR02881 spore_V_K stage V sp 94.2 0.14 3.1E-06 55.4 8.3 18 505-522 43-60 (261)
306 PRK14960 DNA polymerase III su 94.2 0.22 4.7E-06 59.7 10.1 40 616-657 117-156 (702)
307 KOG2036 Predicted P-loop ATPas 94.2 0.82 1.8E-05 53.8 14.1 142 491-659 255-412 (1011)
308 PRK10416 signal recognition pa 94.2 0.86 1.9E-05 50.7 14.3 133 504-669 114-255 (318)
309 PRK14956 DNA polymerase III su 94.2 0.12 2.6E-06 60.0 7.7 19 507-525 43-61 (484)
310 PRK08691 DNA polymerase III su 94.1 0.4 8.7E-06 58.0 12.2 40 615-655 117-156 (709)
311 PRK05986 cob(I)alamin adenolsy 94.1 0.63 1.4E-05 47.3 11.8 147 502-668 20-168 (191)
312 PRK00411 cdc6 cell division co 94.1 0.29 6.3E-06 56.5 10.9 26 505-531 56-81 (394)
313 KOG0298 DEAD box-containing he 94.0 0.078 1.7E-06 66.2 6.0 96 714-813 1221-1316(1394)
314 COG1474 CDC6 Cdc6-related prot 94.0 0.43 9.4E-06 54.1 11.7 26 505-531 43-68 (366)
315 PRK08533 flagellar accessory p 94.0 0.32 7E-06 51.5 10.1 51 503-562 23-73 (230)
316 TIGR03689 pup_AAA proteasome A 94.0 0.3 6.5E-06 57.5 10.6 61 465-529 177-240 (512)
317 PRK14964 DNA polymerase III su 94.0 0.35 7.6E-06 56.7 11.1 21 505-525 36-56 (491)
318 PRK04195 replication factor C 93.9 0.3 6.6E-06 57.9 10.8 18 504-521 39-56 (482)
319 KOG2028 ATPase related to the 93.9 0.26 5.6E-06 53.8 8.9 17 506-522 164-180 (554)
320 cd01122 GP4d_helicase GP4d_hel 93.9 0.13 2.8E-06 56.1 7.0 40 502-548 28-67 (271)
321 TIGR00708 cobA cob(I)alamin ad 93.9 0.16 3.4E-06 50.8 6.9 52 616-667 96-149 (173)
322 PF00308 Bac_DnaA: Bacterial d 93.8 0.14 3.1E-06 53.8 6.9 48 615-662 95-144 (219)
323 PRK14958 DNA polymerase III su 93.8 0.25 5.4E-06 58.6 9.6 39 616-655 118-156 (509)
324 PRK13342 recombination factor 93.7 0.45 9.7E-06 55.3 11.5 17 506-522 38-54 (413)
325 KOG0733 Nuclear AAA ATPase (VC 93.7 0.2 4.3E-06 58.3 8.1 55 464-521 505-562 (802)
326 PRK06645 DNA polymerase III su 93.7 0.33 7.1E-06 57.4 10.4 20 506-525 45-64 (507)
327 TIGR03015 pepcterm_ATPase puta 93.7 0.98 2.1E-05 49.0 13.7 33 490-522 24-61 (269)
328 PF00004 AAA: ATPase family as 93.7 0.19 4.1E-06 47.7 7.1 14 507-520 1-14 (132)
329 TIGR00580 mfd transcription-re 93.6 0.23 4.9E-06 63.0 9.3 93 696-788 481-579 (926)
330 TIGR03877 thermo_KaiC_1 KaiC d 93.6 0.22 4.7E-06 53.1 8.0 51 504-563 21-71 (237)
331 PRK09111 DNA polymerase III su 93.5 0.31 6.7E-06 58.8 10.0 41 614-655 129-169 (598)
332 PRK13833 conjugal transfer pro 93.5 0.25 5.5E-06 54.8 8.5 58 490-553 129-187 (323)
333 PRK14873 primosome assembly pr 93.5 0.39 8.4E-06 58.7 10.8 94 697-791 170-266 (665)
334 KOG0738 AAA+-type ATPase [Post 93.5 0.19 4.2E-06 55.4 7.2 16 505-520 246-261 (491)
335 PLN03025 replication factor C 93.5 0.55 1.2E-05 52.5 11.3 39 617-657 99-137 (319)
336 PRK13341 recombination factor 93.4 0.46 9.9E-06 58.7 11.3 40 617-661 109-148 (725)
337 cd00984 DnaB_C DnaB helicase C 93.4 0.25 5.3E-06 52.8 8.0 46 503-555 12-60 (242)
338 PRK14949 DNA polymerase III su 93.4 0.53 1.2E-05 58.3 11.6 38 616-654 118-155 (944)
339 PF05876 Terminase_GpA: Phage 93.3 0.16 3.5E-06 60.9 7.2 70 489-565 16-88 (557)
340 PF02456 Adeno_IVa2: Adenoviru 93.3 0.41 8.9E-06 51.4 9.1 39 507-551 90-128 (369)
341 PHA03368 DNA packaging termina 93.2 0.48 1E-05 56.4 10.3 136 502-660 252-392 (738)
342 PRK14961 DNA polymerase III su 93.1 0.65 1.4E-05 52.9 11.4 38 616-654 118-155 (363)
343 PRK13894 conjugal transfer ATP 93.1 0.27 5.9E-06 54.6 8.0 64 481-552 126-190 (319)
344 COG3972 Superfamily I DNA and 93.1 0.13 2.9E-06 58.1 5.3 133 490-629 163-307 (660)
345 COG0541 Ffh Signal recognition 93.0 1.2 2.6E-05 50.4 12.7 131 506-669 102-235 (451)
346 PRK07471 DNA polymerase III su 93.0 0.57 1.2E-05 53.2 10.5 43 615-658 139-181 (365)
347 PF03969 AFG1_ATPase: AFG1-lik 93.0 1.2 2.6E-05 50.4 13.0 44 617-661 127-171 (362)
348 PHA00729 NTP-binding motif con 92.9 0.68 1.5E-05 48.4 10.1 75 591-668 59-138 (226)
349 PRK14955 DNA polymerase III su 92.9 0.61 1.3E-05 53.9 10.8 20 506-525 40-59 (397)
350 PRK14952 DNA polymerase III su 92.9 0.66 1.4E-05 55.8 11.4 43 615-659 116-158 (584)
351 TIGR02928 orc1/cdc6 family rep 92.9 0.46 1E-05 54.2 9.9 25 505-530 41-65 (365)
352 PF13177 DNA_pol3_delta2: DNA 92.9 0.48 1E-05 47.2 8.7 43 616-659 101-143 (162)
353 PRK14959 DNA polymerase III su 92.9 0.43 9.2E-06 57.4 9.6 20 506-525 40-59 (624)
354 PF00265 TK: Thymidine kinase; 92.9 0.2 4.3E-06 50.6 5.9 35 507-549 4-38 (176)
355 PF02572 CobA_CobO_BtuR: ATP:c 92.9 0.8 1.7E-05 45.8 10.1 52 615-666 94-147 (172)
356 PRK14951 DNA polymerase III su 92.8 0.23 5E-06 59.9 7.3 19 507-525 41-59 (618)
357 COG0593 DnaA ATPase involved i 92.8 0.43 9.4E-06 54.2 9.0 47 617-663 175-223 (408)
358 PTZ00454 26S protease regulato 92.8 0.32 7E-06 55.8 8.2 54 465-521 140-196 (398)
359 PRK14957 DNA polymerase III su 92.8 0.66 1.4E-05 55.3 10.9 40 615-655 117-156 (546)
360 PF05707 Zot: Zonular occluden 92.7 0.23 5.1E-06 51.1 6.3 50 617-667 79-134 (193)
361 TIGR03878 thermo_KaiC_2 KaiC d 92.6 0.71 1.5E-05 49.9 10.3 37 503-547 35-71 (259)
362 PRK07940 DNA polymerase III su 92.6 0.22 4.7E-06 57.1 6.5 44 615-660 115-158 (394)
363 COG2255 RuvB Holliday junction 92.6 0.3 6.4E-06 51.9 6.8 27 597-630 90-116 (332)
364 CHL00181 cbbX CbbX; Provisiona 92.6 0.89 1.9E-05 49.9 11.1 21 504-524 59-79 (287)
365 PRK14969 DNA polymerase III su 92.6 0.8 1.7E-05 54.8 11.5 40 615-655 117-156 (527)
366 PF06745 KaiC: KaiC; InterPro 92.6 0.28 6.1E-06 51.8 7.0 51 504-562 19-69 (226)
367 PRK09112 DNA polymerase III su 92.5 0.75 1.6E-05 52.0 10.5 41 615-656 139-179 (351)
368 PRK06964 DNA polymerase III su 92.5 0.72 1.6E-05 51.7 10.2 35 491-525 3-42 (342)
369 PRK14965 DNA polymerase III su 92.4 0.54 1.2E-05 56.9 9.8 43 615-659 117-159 (576)
370 PRK14963 DNA polymerase III su 92.2 0.59 1.3E-05 55.4 9.6 23 507-530 39-61 (504)
371 PRK11823 DNA repair protein Ra 92.2 0.68 1.5E-05 54.2 10.0 50 504-562 80-129 (446)
372 TIGR02782 TrbB_P P-type conjug 92.1 0.51 1.1E-05 52.1 8.5 64 482-553 111-175 (299)
373 PRK05563 DNA polymerase III su 92.1 0.49 1.1E-05 57.0 9.0 21 505-525 39-59 (559)
374 COG2909 MalT ATP-dependent tra 92.1 0.26 5.7E-06 59.7 6.4 44 617-660 129-172 (894)
375 COG2109 BtuR ATP:corrinoid ade 92.1 0.84 1.8E-05 45.7 8.9 53 617-669 122-176 (198)
376 PRK11034 clpA ATP-dependent Cl 92.1 1.1 2.3E-05 55.8 11.9 45 618-662 279-327 (758)
377 PRK06871 DNA polymerase III su 92.0 1 2.2E-05 50.2 10.6 42 615-657 105-146 (325)
378 PRK08699 DNA polymerase III su 92.0 1.3 2.7E-05 49.6 11.4 36 491-526 3-43 (325)
379 PRK14962 DNA polymerase III su 91.9 1 2.2E-05 53.0 11.1 18 506-523 38-55 (472)
380 PRK05896 DNA polymerase III su 91.9 0.72 1.6E-05 55.2 9.9 21 505-525 39-59 (605)
381 KOG1513 Nuclear helicase MOP-3 91.9 0.19 4E-06 59.7 4.7 80 757-836 850-941 (1300)
382 COG4962 CpaF Flp pilus assembl 91.9 0.39 8.3E-06 52.8 6.9 60 486-554 154-214 (355)
383 COG0470 HolB ATPase involved i 91.8 0.53 1.1E-05 52.6 8.4 26 505-531 24-50 (325)
384 KOG0739 AAA+-type ATPase [Post 91.7 2.5 5.4E-05 45.3 12.3 127 498-678 155-298 (439)
385 COG1110 Reverse gyrase [DNA re 91.7 0.42 9E-06 58.9 7.6 62 713-774 124-191 (1187)
386 KOG1133 Helicase of the DEAD s 91.7 0.23 4.9E-06 58.5 5.2 42 489-530 15-60 (821)
387 PF10593 Z1: Z1 domain; Inter 91.6 0.38 8.2E-06 51.1 6.5 87 738-829 110-201 (239)
388 KOG0741 AAA+-type ATPase [Post 91.6 3.3 7.1E-05 47.8 13.9 69 471-549 493-573 (744)
389 TIGR02880 cbbX_cfxQ probable R 91.6 0.59 1.3E-05 51.2 8.2 19 504-522 58-76 (284)
390 COG2804 PulE Type II secretory 91.6 0.32 6.9E-06 56.1 6.2 46 482-531 237-284 (500)
391 TIGR02639 ClpA ATP-dependent C 91.5 2.1 4.5E-05 53.7 13.9 21 504-524 203-223 (731)
392 PRK14950 DNA polymerase III su 91.5 2 4.4E-05 52.2 13.4 19 506-524 40-58 (585)
393 PF05872 DUF853: Bacterial pro 91.5 0.38 8.3E-06 54.5 6.5 45 614-658 251-300 (502)
394 cd03239 ABC_SMC_head The struc 91.4 0.18 3.9E-06 51.2 3.6 42 616-657 115-157 (178)
395 PF03237 Terminase_6: Terminas 91.3 1.8 3.8E-05 49.2 12.3 145 508-673 1-154 (384)
396 TIGR00767 rho transcription te 91.3 0.57 1.2E-05 53.1 7.7 28 502-530 166-193 (415)
397 PRK06067 flagellar accessory p 91.3 1.5 3.3E-05 46.5 10.9 50 504-562 25-74 (234)
398 KOG0670 U4/U6-associated splic 91.3 0.17 3.6E-06 57.7 3.4 10 665-674 596-605 (752)
399 PRK10689 transcription-repair 91.3 0.75 1.6E-05 59.8 9.8 76 713-788 648-728 (1147)
400 KOG2543 Origin recognition com 91.2 1.3 2.8E-05 49.1 10.0 143 491-661 11-161 (438)
401 COG1198 PriA Primosomal protei 91.2 0.79 1.7E-05 56.1 9.4 94 694-788 224-319 (730)
402 PRK04841 transcriptional regul 91.2 1 2.2E-05 58.3 11.2 45 616-660 120-164 (903)
403 TIGR02524 dot_icm_DotB Dot/Icm 91.0 0.5 1.1E-05 53.5 7.1 28 503-531 133-160 (358)
404 KOG0344 ATP-dependent RNA heli 91.0 3.7 7.9E-05 48.0 13.8 98 512-627 365-466 (593)
405 KOG0339 ATP-dependent RNA heli 90.9 1.1 2.5E-05 50.9 9.4 71 714-788 295-376 (731)
406 PRK03992 proteasome-activating 90.9 0.72 1.6E-05 53.1 8.3 16 505-520 166-181 (389)
407 TIGR03346 chaperone_ClpB ATP-d 90.7 2.1 4.6E-05 54.5 13.1 20 504-523 194-213 (852)
408 PRK04328 hypothetical protein; 90.6 1 2.2E-05 48.5 8.7 51 504-563 23-73 (249)
409 TIGR03880 KaiC_arch_3 KaiC dom 90.6 1.2 2.6E-05 46.9 9.3 51 504-563 16-66 (224)
410 cd01121 Sms Sms (bacterial rad 90.6 1.4 3.1E-05 50.1 10.3 50 504-562 82-131 (372)
411 PRK08451 DNA polymerase III su 90.5 1.7 3.8E-05 51.5 11.1 40 615-655 115-154 (535)
412 TIGR02688 conserved hypothetic 90.5 0.58 1.3E-05 53.2 6.8 27 497-523 202-228 (449)
413 PRK00440 rfc replication facto 90.3 2.8 6.2E-05 46.6 12.4 39 617-656 102-140 (319)
414 KOG0991 Replication factor C, 90.3 0.84 1.8E-05 47.0 7.0 18 505-522 49-66 (333)
415 PRK14948 DNA polymerase III su 90.2 0.68 1.5E-05 56.3 7.7 21 505-525 39-59 (620)
416 TIGR03600 phage_DnaB phage rep 90.2 1.1 2.4E-05 52.3 9.2 38 503-547 193-230 (421)
417 PRK14954 DNA polymerase III su 90.2 2.2 4.9E-05 51.7 12.0 20 506-525 40-59 (620)
418 PHA00350 putative assembly pro 90.2 1.1 2.4E-05 51.0 8.7 25 507-531 4-29 (399)
419 PRK07413 hypothetical protein; 90.2 1.7 3.8E-05 48.9 10.2 53 616-668 124-178 (382)
420 COG1200 RecG RecG-like helicas 90.1 1.2 2.7E-05 53.0 9.3 89 700-788 297-390 (677)
421 KOG0740 AAA+-type ATPase [Post 90.1 1.1 2.4E-05 51.1 8.6 81 615-711 243-336 (428)
422 PRK06090 DNA polymerase III su 90.1 1.7 3.6E-05 48.3 10.0 43 614-657 105-147 (319)
423 PRK07993 DNA polymerase III su 90.1 1.2 2.5E-05 50.1 8.8 43 614-657 105-147 (334)
424 TIGR02525 plasmid_TraJ plasmid 90.0 0.8 1.7E-05 52.0 7.6 27 504-531 149-175 (372)
425 KOG0742 AAA+-type ATPase [Post 90.0 1.2 2.6E-05 49.5 8.5 16 505-520 385-400 (630)
426 PF05729 NACHT: NACHT domain 90.0 1.7 3.7E-05 42.9 9.2 25 506-531 2-26 (166)
427 TIGR00635 ruvB Holliday juncti 89.9 0.79 1.7E-05 50.8 7.5 17 505-521 31-47 (305)
428 KOG0058 Peptide exporter, ABC 89.9 0.59 1.3E-05 56.0 6.5 146 501-657 491-661 (716)
429 PRK07414 cob(I)yrinic acid a,c 89.9 1.1 2.3E-05 45.1 7.4 51 616-666 114-166 (178)
430 TIGR03345 VI_ClpV1 type VI sec 89.9 2.8 6E-05 53.2 12.9 17 505-521 209-225 (852)
431 KOG0701 dsRNA-specific nucleas 89.8 0.22 4.7E-06 64.9 3.1 92 717-808 295-398 (1606)
432 PRK07413 hypothetical protein; 89.8 0.54 1.2E-05 52.9 5.8 53 616-668 304-359 (382)
433 PRK09376 rho transcription ter 89.7 0.78 1.7E-05 51.8 6.9 30 501-531 166-195 (416)
434 PRK07133 DNA polymerase III su 89.7 0.55 1.2E-05 57.4 6.2 20 506-525 42-61 (725)
435 COG1222 RPT1 ATP-dependent 26S 89.7 1.6 3.4E-05 48.2 8.9 18 504-521 185-202 (406)
436 KOG0734 AAA+-type ATPase conta 89.6 1.4 3E-05 50.7 8.8 45 617-661 396-450 (752)
437 TIGR00665 DnaB replicative DNA 89.6 1.6 3.4E-05 51.2 9.9 37 504-547 195-231 (434)
438 COG1485 Predicted ATPase [Gene 89.5 1.2 2.7E-05 49.0 8.1 109 505-662 66-175 (367)
439 PRK13851 type IV secretion sys 89.4 0.61 1.3E-05 52.4 5.9 46 499-553 157-202 (344)
440 TIGR02012 tigrfam_recA protein 89.3 0.8 1.7E-05 50.8 6.7 42 504-553 55-96 (321)
441 TIGR01243 CDC48 AAA family ATP 89.3 1.1 2.3E-05 56.3 8.8 54 464-520 447-503 (733)
442 PF03266 NTPase_1: NTPase; In 89.2 0.12 2.5E-06 51.9 0.1 119 506-643 1-123 (168)
443 TIGR01243 CDC48 AAA family ATP 89.2 0.74 1.6E-05 57.7 7.2 53 465-520 173-228 (733)
444 COG0513 SrmB Superfamily II DN 89.1 1.3 2.8E-05 52.9 8.9 68 717-788 102-180 (513)
445 TIGR01241 FtsH_fam ATP-depende 89.1 0.98 2.1E-05 53.9 7.8 54 464-520 49-104 (495)
446 KOG1132 Helicase of the DEAD s 89.1 7.1 0.00015 47.9 14.6 104 716-820 563-721 (945)
447 PRK10865 protein disaggregatio 89.0 2.7 5.9E-05 53.4 12.0 19 504-522 199-217 (857)
448 PRK06647 DNA polymerase III su 89.0 3 6.5E-05 50.2 11.8 19 506-524 40-58 (563)
449 TIGR00678 holB DNA polymerase 88.9 2.9 6.3E-05 42.7 10.2 24 506-530 16-39 (188)
450 PF01443 Viral_helicase1: Vira 88.9 0.53 1.2E-05 49.8 4.9 19 507-526 1-19 (234)
451 PF12846 AAA_10: AAA-like doma 88.8 1.2 2.5E-05 49.1 7.7 41 505-553 2-42 (304)
452 PRK13900 type IV secretion sys 88.8 1.3 2.9E-05 49.6 8.0 45 500-553 156-200 (332)
453 TIGR02858 spore_III_AA stage I 88.7 1.7 3.6E-05 47.2 8.5 24 497-520 101-127 (270)
454 PRK06904 replicative DNA helic 88.7 3.9 8.4E-05 48.3 12.2 49 504-560 221-269 (472)
455 PRK14953 DNA polymerase III su 88.6 2.1 4.6E-05 50.6 10.0 28 928-955 416-443 (486)
456 cd01128 rho_factor Transcripti 88.6 1.7 3.7E-05 46.5 8.4 20 501-520 13-32 (249)
457 CHL00095 clpC Clp protease ATP 88.6 2.7 5.9E-05 53.3 11.6 23 504-526 200-222 (821)
458 PRK00080 ruvB Holliday junctio 88.5 0.83 1.8E-05 51.3 6.4 18 505-522 52-69 (328)
459 CHL00176 ftsH cell division pr 88.4 1.2 2.6E-05 54.4 7.9 17 505-521 217-233 (638)
460 TIGR03881 KaiC_arch_4 KaiC dom 88.4 3.5 7.5E-05 43.5 10.7 49 503-560 19-67 (229)
461 PRK13764 ATPase; Provisional 88.3 0.93 2E-05 54.4 6.8 27 503-530 256-282 (602)
462 KOG1513 Nuclear helicase MOP-3 88.3 1.1 2.4E-05 53.5 7.1 228 488-750 263-528 (1300)
463 PF03796 DnaB_C: DnaB-like hel 88.3 1.1 2.3E-05 48.5 6.9 111 505-632 20-145 (259)
464 TIGR00614 recQ_fam ATP-depende 88.2 2.1 4.5E-05 50.8 9.7 76 713-788 50-133 (470)
465 cd01129 PulE-GspE PulE/GspE Th 88.2 1.3 2.9E-05 47.9 7.4 37 492-529 66-104 (264)
466 PRK05416 glmZ(sRNA)-inactivati 88.2 2.1 4.5E-05 46.9 8.9 26 723-749 259-284 (288)
467 TIGR00763 lon ATP-dependent pr 88.1 2.2 4.8E-05 53.8 10.3 17 504-520 347-363 (775)
468 TIGR01242 26Sp45 26S proteasom 88.0 1.2 2.5E-05 50.9 7.2 17 504-520 156-172 (364)
469 COG5008 PilU Tfp pilus assembl 88.0 0.42 9.1E-06 50.1 3.1 45 464-528 105-150 (375)
470 COG1618 Predicted nucleotide k 87.9 0.2 4.3E-06 48.8 0.7 119 506-644 7-129 (179)
471 cd00983 recA RecA is a bacter 87.8 1.4 3E-05 49.0 7.3 43 504-554 55-97 (325)
472 PRK14971 DNA polymerase III su 87.8 4.3 9.2E-05 49.5 12.1 42 614-657 118-159 (614)
473 KOG0333 U5 snRNP-like RNA heli 87.8 2.1 4.5E-05 49.2 8.6 71 539-622 516-590 (673)
474 COG3598 RepA RecA-family ATPas 87.7 3 6.6E-05 45.2 9.4 77 493-570 77-156 (402)
475 TIGR02868 CydC thiol reductant 87.7 1.3 2.8E-05 53.4 7.7 41 615-655 486-526 (529)
476 PRK09354 recA recombinase A; P 87.7 1.1 2.4E-05 50.2 6.4 42 504-553 60-101 (349)
477 PHA00012 I assembly protein 87.6 4.5 9.7E-05 44.4 10.7 25 507-531 4-28 (361)
478 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.6 2.4 5.2E-05 41.3 8.2 40 615-657 86-125 (144)
479 TIGR02237 recomb_radB DNA repa 87.5 2.6 5.6E-05 43.8 9.0 38 504-549 12-49 (209)
480 PF01637 Arch_ATPase: Archaeal 87.5 0.39 8.3E-06 50.6 2.7 25 504-529 20-44 (234)
481 PRK06305 DNA polymerase III su 87.4 2.5 5.3E-05 49.6 9.5 20 506-525 41-60 (451)
482 PRK07004 replicative DNA helic 87.4 2.5 5.5E-05 49.7 9.6 23 504-526 213-235 (460)
483 COG1219 ClpX ATP-dependent pro 87.4 0.42 9.2E-06 51.5 2.8 21 502-522 95-115 (408)
484 TIGR02655 circ_KaiC circadian 87.3 2.8 6E-05 49.8 10.1 59 496-563 250-313 (484)
485 KOG0737 AAA+-type ATPase [Post 87.1 2.7 5.8E-05 46.6 8.7 53 467-522 89-145 (386)
486 PRK09435 membrane ATPase/prote 87.0 11 0.00025 42.0 14.0 23 507-530 59-81 (332)
487 KOG0060 Long-chain acyl-CoA tr 87.0 0.71 1.5E-05 53.8 4.5 48 595-646 570-617 (659)
488 PRK08506 replicative DNA helic 86.9 3.6 7.9E-05 48.6 10.6 48 504-560 192-239 (472)
489 PRK10436 hypothetical protein; 86.9 1.1 2.3E-05 52.5 6.1 38 492-530 204-243 (462)
490 cd01125 repA Hexameric Replica 86.9 3.1 6.8E-05 44.3 9.3 61 506-567 3-67 (239)
491 PHA03372 DNA packaging termina 86.9 6 0.00013 46.9 11.9 134 502-658 200-337 (668)
492 PF02534 T4SS-DNA_transf: Type 86.9 0.7 1.5E-05 54.7 4.7 56 505-574 45-100 (469)
493 cd01126 TraG_VirD4 The TraG/Tr 86.7 0.62 1.3E-05 53.6 4.0 55 506-574 1-55 (384)
494 TIGR01420 pilT_fam pilus retra 86.6 1.7 3.7E-05 49.1 7.4 27 503-530 121-147 (343)
495 PRK05595 replicative DNA helic 86.6 2.3 4.9E-05 50.0 8.7 157 486-655 183-358 (444)
496 cd03289 ABCC_CFTR2 The CFTR su 86.5 0.84 1.8E-05 49.8 4.7 149 501-655 27-194 (275)
497 KOG0780 Signal recognition par 86.5 4.5 9.9E-05 45.0 10.0 132 507-669 104-236 (483)
498 TIGR02533 type_II_gspE general 86.4 1.4 3.1E-05 52.0 6.8 54 482-546 221-276 (486)
499 PRK14701 reverse gyrase; Provi 86.4 2.9 6.3E-05 56.3 10.3 81 691-772 98-186 (1638)
500 KOG0733 Nuclear AAA ATPase (VC 86.2 3.3 7.2E-05 48.7 9.2 144 457-657 177-336 (802)
No 1
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-101 Score=897.03 Aligned_cols=732 Identities=57% Similarity=0.885 Sum_probs=626.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCccCCCCccCCCCCcCccCccCC-CCCCCCCCCCCC
Q 002040 201 LEDEQRKLDEEMEKRRRRVQEWQELKRKKEESERENRGDANVEEPKAGRNWTLDREDSDDEEVPQTG-KSETDMDADEEP 279 (976)
Q Consensus 201 ~e~~~~~~~ee~~kr~~~~~e~~~~~~~~e~~e~e~~~~~~~~~~~~~r~~~~~~e~~de~~~~~~~-~~e~~~~~~e~~ 279 (976)
....+.++.+++.+++++++.|.+.+++.+.+...+..+.....+...+.|+++++++++..+|... .++.+...
T Consensus 139 ~~~~~~~l~e~l~~rr~~~e~~~e~k~k~e~~~~~t~~~~~~~~~~s~k~~~l~~~~d~~~~~~~~~~~s~q~~~~---- 214 (997)
T KOG0334|consen 139 YGSIQARLAEELRKRRERVEKWKELKRKEEKEKVVTLMLNVSDEKNSKKLWELEDEDDDDSANPAELGWSEQDVPE---- 214 (997)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhhcchHHhhhhhhcccccccccccceEecCCCCccccCccccchhhccchh----
Confidence 3456678899999999999999999999888887776666667778889999999988777554321 11111000
Q ss_pred CCCCccccccccccCCCCCCChhhhcCCCCCCCCChhHHHHhcccchhHHhhhccCCCCCCCCCccccccccccCCCCCC
Q 002040 280 KPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPEVEKLKNTVEPSFTDGNNVESKKMDRKGDRRSN 359 (976)
Q Consensus 280 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~~~ 359 (976)
.| ..| ..-..++++||+|+||..++.+.+..+... .+. +.. ....
T Consensus 215 --~~----~~p--------------~~~~~dd~~d~ld~~m~~~~~~~~~~~~~~-~~~--~~~------------~~~~ 259 (997)
T KOG0334|consen 215 --LM----KAP--------------NLMLVDDEEDPLDAFMEQMVGKVLAKFSNS-SHS--KAQ------------VVEV 259 (997)
T ss_pred --hc----cCc--------------cccccccccchHHHHHHHHHHHHHHHhcCC-Ccc--ccc------------cccc
Confidence 00 000 012346789999999999765444332111 010 000 0011
Q ss_pred CCCCCccc-ccccCCCCCCCCCCcccCCcccCCCCCCCcchHHHHHHHHHHhhccCCcCCCcccccCcccccccccchhh
Q 002040 360 GEQPKKSS-NKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVKKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEI 438 (976)
Q Consensus 360 ~~~~~~~~-~~~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 438 (976)
+....+.. .+..+.+++..+...|..+.+.+++ ++....++..+.+..+.+..++||.+.|.||+++||++..++
T Consensus 260 s~~~~~~~~~~~~g~v~e~~~~~~D~~e~~~~~~----~d~~~~~~~~~~~~~~~~~~~~~S~~~~epFRknfy~e~~di 335 (997)
T KOG0334|consen 260 SKDARKGLNPKLSGFVIEPGLVNGDNEEVELNGS----FDNRNAAKNMNLKAKKNLIQVDHSKISYEPFRKNFYIEVRDI 335 (997)
T ss_pred chhhhccCCccccceeccCCcCCcchhhhhhccc----cchHHHHHHhccccccceeecccccccchhhhhcccccchhH
Confidence 22222332 2355677777666666554444333 445566666666666788999999999999999999999999
Q ss_pred hcCCHHHHHHHHhhcC-ceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCch
Q 002040 439 ARMTPEEVSAYRKQLE-LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGK 517 (976)
Q Consensus 439 ~~~~~~~~~~~~~~~~-i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGK 517 (976)
..|+.+++..|+..+. |.+.|..+|.|+.+|.++|++..++..++++||.+|+|||.+|||+|++|+|||++|.|||||
T Consensus 336 ~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGK 415 (997)
T KOG0334|consen 336 KRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGK 415 (997)
T ss_pred HHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCcc
Confidence 9999999999999998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeC
Q 002040 518 TLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCT 597 (976)
Q Consensus 518 T~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~T 597 (976)
|++|++||+.|++.+++...+.||.+||||||++||.||+.++.+|++.+++.++|+|||..+.+++..+++++.|+|||
T Consensus 416 T~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~t 495 (997)
T KOG0334|consen 416 TLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCT 495 (997)
T ss_pred chhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEE
Q 002040 598 PGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (976)
Q Consensus 598 p~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~ 677 (976)
||+++++++.+.+++++|.++.|||+||||+|++++|.|++..|+.++++++|+++||||+|..+..++...+..|+.+.
T Consensus 496 pGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveii 575 (997)
T KOG0334|consen 496 PGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEII 575 (997)
T ss_pred cchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcccccCCceEEEEecC-cchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHH
Q 002040 678 VGGRSVVNKDITQLVEVRP-ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDREST 756 (976)
Q Consensus 678 ~~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~ 756 (976)
+++.++++..+.|.+.++. ...||..|+++|..+...+++||||.++..|+.|...|.+.||+|..|||+.++.+|..+
T Consensus 576 v~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~st 655 (997)
T KOG0334|consen 576 VGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSST 655 (997)
T ss_pred EccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhH
Confidence 9999999999999999988 899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhc
Q 002040 757 ISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (976)
Q Consensus 757 ~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (976)
+..|++|.+.+||||+++++|||++.+.+||||++|+++.+|+||+||+||+|.+|.||+|+++.+..++.+|+++|..+
T Consensus 656 i~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~ 735 (997)
T KOG0334|consen 656 IEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELS 735 (997)
T ss_pred HHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHhhhhhhccCCC-CCCCCcccchhHHHHHHHHHHHHHHHcCCCCCCCCCCccccccccc---
Q 002040 837 EQVVPDDLKALADSFMAKVNQGLEQAHGTG-YGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDKSDSDDEDEGIRKA--- 912 (976)
Q Consensus 837 ~~~vp~~l~~l~~~~~~~~~~~~~~~~~~~-~~g~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--- 912 (976)
++++|..|.+|+..|+++.+.+....+++| |+|+||.|.+...+.++..+.++...+|+.+...+++........+
T Consensus 736 ~~~~P~~l~~l~~~f~~~~~~~~s~~~~~Gg~~G~g~~~~~~~~~~~~~~ke~q~~~~g~~~~d~e~d~~~~~~~~~~~~ 815 (997)
T KOG0334|consen 736 KQPVPKLLQALSERFKAKQKAGGSQVHGGGGFGGKGLKFDEVEEELRQERKEAQRKDLGLKEGDNESDIEVDNSDKASQP 815 (997)
T ss_pred cCCCchHHHHHHHHHHhhhhcccccccccCcccCCcccccHHHHHHHHHHhhccccCcCCCCCCcccccccccchhhccc
Confidence 999999999999999999999988888888 9999999998888899999999999999987666543322210000
Q ss_pred -------------CCC--------------------------------Cc------------------------------
Q 002040 913 -------------GGD--------------------------------IS------------------------------ 917 (976)
Q Consensus 913 -------------~~~--------------------------------~~------------------------------ 917 (976)
+.. ++
T Consensus 816 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~A~~~~~~l~~~~~~~s~d~~~~ 895 (997)
T KOG0334|consen 816 RESIQNPTFLQVEAESKTQEKTLLLGGELNAARPMVPYPVPGTAEFQVIAARDDAEIKALLLNAQLNYQLIDTSSDLILQ 895 (997)
T ss_pred cccccCcccccccccccchhhhhhcccccccccccccccccccccccccchhhhHHHHHhhccccceeecccCCcccccc
Confidence 000 00
Q ss_pred ------------HHHH---------HHHhh----------------------hccceeeeecCCcHHHHHHHHHHHHHHH
Q 002040 918 ------------QQDA---------LAKIS----------------------AIRKLYLFIEGPTEQSVKRAKAELKRVL 954 (976)
Q Consensus 918 ------------~~~~---------~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 954 (976)
||.+ |..|. +++||||||||.++.+|+.|+.+|.++|
T Consensus 896 ~~y~~~~~inD~Pq~~r~~vt~~~~L~~i~e~~~~~it~rg~f~~~gk~p~~gErklyl~ve~~~e~~vqra~~e~~r~l 975 (997)
T KOG0334|consen 896 FIYEAELEINDFPQNARWRVTYKEALLRISEPTAAGITTRGKFNPPGKEPKPGERKLYLLVEGPDELSVQRAIEELERLL 975 (997)
T ss_pred ceeeeeccccccchhcceeeechhhhhhccCccccceeeccccCCCCCCCCCcchhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 1111 22222 2889999999999999999999999999
Q ss_pred HHHHHHhhc-CCCCCCCcceeeC
Q 002040 955 EDFTNQALS-LPGGAQPGRYSVV 976 (976)
Q Consensus 955 ~~~~~~~~~-~~~~~~~~~~~~~ 976 (976)
++++.++.. ...+. +|||.||
T Consensus 976 ~e~~~~~~~~~~~~~-~~~y~~~ 997 (997)
T KOG0334|consen 976 EEEVVNLFSSLQPSC-KGRYLVV 997 (997)
T ss_pred HHHHHHHHhccCCCc-cceeecC
Confidence 999999985 44444 8999986
No 2
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-83 Score=680.40 Aligned_cols=441 Identities=49% Similarity=0.807 Sum_probs=426.2
Q ss_pred HHHhhccCCcCCCcccccCcccccccccchhhhcCCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHcC
Q 002040 407 KKTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLN 486 (976)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~ 486 (976)
.+++.+++++++|+.+.|.||.++||.++..|..++..++..++..+++++.|..+|+|+++|.+||+...|+.++.+..
T Consensus 163 ~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s~~rpvtsfeh~gfDkqLm~airk~E 242 (731)
T KOG0339|consen 163 DKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSSPPRPVTSFEHFGFDKQLMTAIRKSE 242 (731)
T ss_pred ccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCCCCCCcchhhhcCchHHHHHHHhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
|.+|||+|+++||..++|+++|.+|.||||||.+|++|++-|+++++.+..++||..||||||++||.|++.++++|++.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ 322 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKA 322 (731)
T ss_pred cccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
+|++++++|||.+..+|+..|+.++.||||||++|++++... .++|.+++|||||||++|+++||.+++..|..+++
T Consensus 323 ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmK---atn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir 399 (731)
T KOG0339|consen 323 YGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMK---ATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR 399 (731)
T ss_pred ccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhh---cccceeeeEEEEechhhhhccccHHHHHHHHhhcC
Confidence 999999999999999999999999999999999999999764 47899999999999999999999999999999999
Q ss_pred CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc-chHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
|++|+|+|||||+..++.+++.+|.+|+.+..+.....+..|+|.+.+++. ..|+.+|+..|..+...|++|||+....
T Consensus 400 pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~ 479 (731)
T KOG0339|consen 400 PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKA 479 (731)
T ss_pred CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccC
Confidence 999999999999999999999999999999988888889999999987765 5789999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhccc
Q 002040 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (976)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~ 805 (976)
.++.++..|.-.+|.|..+||+|.|.+|..++..|+.+.+.|||||+++++||||+.+.+|||||+-.++..|.||+||+
T Consensus 480 ~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 480 DAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred CHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHH
Q 002040 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADS 850 (976)
Q Consensus 806 gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~ 850 (976)
||+|.+|.+|+|+|+.|..++..|++.|+.++|.||+.|..|+-.
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~LVnnLe~agQnVP~~l~dlamk 604 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAGQNVPDELMDLAMK 604 (731)
T ss_pred ccccccceeeEEechhhHHHhhHHHHHHhhccccCChHHHHHHhh
Confidence 999999999999999999999999999999999999999766643
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-75 Score=653.61 Aligned_cols=427 Identities=47% Similarity=0.851 Sum_probs=394.6
Q ss_pred cccCcccccccccchhhhcCCHHHHHHHHhhcCceeccCC-CCCcccccc-----------------------------c
Q 002040 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKD-VPKPIKTWH-----------------------------Q 471 (976)
Q Consensus 422 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~-~p~pi~~~~-----------------------------~ 471 (976)
..+.+|.++||.+++........+...++....+.+.+.. +|.|+.+|. .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4677899999998888877777777777777777777755 677666554 4
Q ss_pred CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhc-CCCCCCCCCCeEEEEccCH
Q 002040 472 TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD-QPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 472 ~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~-~~~~~~~~~~~vLIl~Ptr 550 (976)
++|+..+...|+..||..|||||+++||.+++|+|+|++|.||||||++|++|++.|+.. ++....+.+|+||||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 556666777778999999999999999999999999999999999999999999999998 6777788899999999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccc
Q 002040 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (976)
Q Consensus 551 ~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~ 630 (976)
+||.|+...+..|+..++++++|+|||.+...|+..+..+++|+|+|||+|++++.... .+|++++|+||||||+|+
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~---~~l~~v~ylVLDEADrMl 252 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGS---LNLSRVTYLVLDEADRML 252 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCC---ccccceeEEEeccHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998754 789999999999999999
Q ss_pred ccCCchHHHHHHHhc-CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcc--cccCCceEEEEecCcchHHHHHHHH
Q 002040 631 DMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS--VVNKDITQLVEVRPESDRFLRLLEL 707 (976)
Q Consensus 631 ~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~--~~~~~i~q~~~~~~~~~k~~~l~~~ 707 (976)
+|||.+++..|+..+ ++.+|+|++|||||..+..++..|+.+|+.+.++... ..+.+|.|++.++....|...|..+
T Consensus 253 dmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~l 332 (519)
T KOG0331|consen 253 DMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKL 332 (519)
T ss_pred ccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHH
Confidence 999999999999999 7778999999999999999999999999999988654 5677899999999999999999999
Q ss_pred HHhhh--cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE
Q 002040 708 LGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (976)
Q Consensus 708 l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~ 785 (976)
|..+. ..+++||||+|+..|+.|+..|...++++.+|||+++|.+|..+++.|++|++.|||||++|+||||||+|++
T Consensus 333 L~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~l 412 (519)
T KOG0331|consen 333 LEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDL 412 (519)
T ss_pred HHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccE
Confidence 99886 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHH
Q 002040 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851 (976)
Q Consensus 786 VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~ 851 (976)
|||||+|.+.++|+||+|||||+|++|.+++|++..+...+..+++.+....+.+|+.|..+...-
T Consensus 413 VInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~l~~~~~~~ 478 (519)
T KOG0331|consen 413 VINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPDLLEYARVS 478 (519)
T ss_pred EEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999887776543
No 4
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.3e-73 Score=592.71 Aligned_cols=436 Identities=42% Similarity=0.709 Sum_probs=402.0
Q ss_pred cCCCcccccCcccccccccchhhhcCCHHHHHHHHhhcC-ceec------cCCCCCccccccc-CCCCHHHHHHHHHcCC
Q 002040 416 IVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLE-LKIH------GKDVPKPIKTWHQ-TGLTSKIMETIRKLNY 487 (976)
Q Consensus 416 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~------g~~~p~pi~~~~~-~~l~~~l~~~l~~~~~ 487 (976)
..+..|...+|..++||.+..+.+.|+..++..++++.. |.+. ...+|+|..+|++ |...+.++..+.+.||
T Consensus 161 ~e~~kW~~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GF 240 (629)
T KOG0336|consen 161 DEKFKWAKLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGF 240 (629)
T ss_pred hhhcccccCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccC
Confidence 345567788999999999999999999999999998655 6543 2457999999987 6778999999999999
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCC-CCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~-~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
.+|||||.||||.+++|.|+|++|.||+|||++|++|.+-|+..++.. ...++|.+|+++||++||.|+.-++.++. .
T Consensus 241 qKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-y 319 (629)
T KOG0336|consen 241 QKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-Y 319 (629)
T ss_pred CCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-h
Confidence 999999999999999999999999999999999999999998877543 23468999999999999999988888764 4
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
.|+..+|+|||.+..+++..++.+.+|+|+||++|.++...+ ..+|..++||||||||+|++|||.+++..|+-.++
T Consensus 320 ng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n---~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR 396 (629)
T KOG0336|consen 320 NGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDN---VINLASITYLVLDEADRMLDMGFEPQIRKILLDIR 396 (629)
T ss_pred cCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcC---eeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC
Confidence 689999999999999999999999999999999999988654 47899999999999999999999999999999999
Q ss_pred CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccc-ccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~-~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
|++|++++|||||..+..|+..|+..|+.+.++.... ....+.|.+.+.....|+..+..++....+..++||||..+.
T Consensus 397 PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~ 476 (629)
T KOG0336|consen 397 PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKV 476 (629)
T ss_pred CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechh
Confidence 9999999999999999999999999999998887654 455788999888888888877777777777889999999999
Q ss_pred HHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhccc
Q 002040 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (976)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~ 805 (976)
.++.|...|.-.|+.+..|||+-.|.+|+..+..|++|.++|||||+++++|||++++++|+|||+|.+++.|+||+||+
T Consensus 477 ~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 477 MADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred hhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 002040 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKV 855 (976)
Q Consensus 806 gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~ 855 (976)
||+|.+|++++|++-.|...+..|++.|+.+.|.||+.|..|+..|..+.
T Consensus 557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevPdeL~~mAeryk~~q 606 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVPDELVRMAERYKLKQ 606 (629)
T ss_pred ccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999998874
No 5
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=4.1e-71 Score=595.02 Aligned_cols=407 Identities=42% Similarity=0.727 Sum_probs=382.4
Q ss_pred chhhhcCCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCC
Q 002040 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTG 514 (976)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TG 514 (976)
...+..|++..|..|+..++|.+.|..+|.|+.+|.+.+||..++..+...||..|+|||.++||..++++|+|++|+||
T Consensus 213 ~k~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETg 292 (673)
T KOG0333|consen 213 EKVLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETG 292 (673)
T ss_pred hhhHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEecc
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCCCCC----CCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcC
Q 002040 515 SGKTLAFVLPMLRHIKDQPPVAA----GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG 590 (976)
Q Consensus 515 sGKT~~~~l~il~~l~~~~~~~~----~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~ 590 (976)
||||++|++|++..|...|+... ..||.++||+|||+||.|+..+-.+|++.+|++++.++||.+..++--.+..|
T Consensus 293 sGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 293 SGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhcc
Confidence 99999999999999998876543 35899999999999999999999999999999999999999999998899999
Q ss_pred CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCC----------------------
Q 002040 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD---------------------- 648 (976)
Q Consensus 591 ~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~---------------------- 648 (976)
|+|+|+|||+|++.|.+. .+-|..+.|||+|||++|++|||.+++..||.+++..
T Consensus 373 ceiviatPgrLid~Lenr---~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~ 449 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLENR---YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSS 449 (673)
T ss_pred ceeeecCchHHHHHHHHH---HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccc
Confidence 999999999999999774 3678899999999999999999999999999887531
Q ss_pred ---CcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 649 ---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 649 ---~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
+|+++||||+|+.+..++..||..|+.++++..+.+...+.|.+.....+.++..|.++|... ...++|||+|+++
T Consensus 450 k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk 528 (673)
T KOG0333|consen 450 KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKK 528 (673)
T ss_pred cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechh
Confidence 799999999999999999999999999999999999999999999999999999999999876 4569999999999
Q ss_pred HHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhccc
Q 002040 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (976)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~ 805 (976)
.|+.|++.|.+.||.|..|||+.++++|+.++..|++|...|||||+++++|||||+|.+|||||++.++.+|+||||||
T Consensus 529 ~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRT 608 (673)
T KOG0333|consen 529 GADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRT 608 (673)
T ss_pred hHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCCcCchHHHHHHHh-hccCCCChHHH
Q 002040 806 GRAGRKGCAITFISEEDAKYSPDLVKALE-LSEQVVPDDLK 845 (976)
Q Consensus 806 gR~g~~g~~~~~~~~~d~~~~~~i~~~l~-~~~~~vp~~l~ 845 (976)
||+|+.|++++|+++.+...+++|...|- ......|+.|.
T Consensus 609 gRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela 649 (673)
T KOG0333|consen 609 GRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELA 649 (673)
T ss_pred cccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhc
Confidence 99999999999999999999999998876 44556676654
No 6
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.6e-72 Score=583.86 Aligned_cols=452 Identities=39% Similarity=0.667 Sum_probs=413.1
Q ss_pred cccCcccccccccchhhhcCCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 002040 422 IDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVI 501 (976)
Q Consensus 422 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~i 501 (976)
+.|..--+..|.++--+..|+.++.+..++.|.|.+.|..+|+||.+|.++.++..++..|++.|+..|||||.|.||.+
T Consensus 125 i~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv 204 (610)
T KOG0341|consen 125 ITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV 204 (610)
T ss_pred CcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE
Confidence 45655556678888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEcCCCCchHHHHHHHHHHHHhcC---CCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc------CcEEE
Q 002040 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ---PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM------GVRCV 572 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~---~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~------~~~~~ 572 (976)
++|+|+|++|-||||||++|.+|++...+.+ -++..+.||..|||||+|+||.|++..+..|+..+ .+++.
T Consensus 205 LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~ 284 (610)
T KOG0341|consen 205 LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSL 284 (610)
T ss_pred eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 9999999999999999999999998877654 35667889999999999999999999999887654 36788
Q ss_pred EeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEE
Q 002040 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTV 652 (976)
Q Consensus 573 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i 652 (976)
++.||.+..++...++.|.+|+|+|||+|.++|.. +..+|.-+.|+++||||+|+++||...+..|+.++...+|++
T Consensus 285 LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K---K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTL 361 (610)
T KOG0341|consen 285 LCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK---KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTL 361 (610)
T ss_pred hhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH---hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhee
Confidence 89999999999999999999999999999999976 457888899999999999999999999999999999999999
Q ss_pred EEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHH
Q 002040 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (976)
Q Consensus 653 ~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~ 732 (976)
+||||||..+..++...+-.|+.++++..+..+.++.|.+.++....|+.+|++.|++. ..++||||..+.+++.+..
T Consensus 362 LFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT--~PpVLIFaEkK~DVD~IhE 439 (610)
T KOG0341|consen 362 LFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKT--SPPVLIFAEKKADVDDIHE 439 (610)
T ss_pred eeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccC--CCceEEEeccccChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999875 5689999999999999999
Q ss_pred HHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCcc
Q 002040 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (976)
Q Consensus 733 ~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g 812 (976)
||.-.|+.++.|||+.+|++|...+..|+.|+.+|||||++++.|||+|++.+|||||+|..+++|+|||||+||.|++|
T Consensus 440 YLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~G 519 (610)
T KOG0341|consen 440 YLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTG 519 (610)
T ss_pred HHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCC-CcCchHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhhhhccCCCC-CCCCcccchhH
Q 002040 813 CAITFISEE-DAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGY-GGSGFKFNEEE 878 (976)
Q Consensus 813 ~~~~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~~~~~~~~~~~~-~g~g~~~~~~~ 878 (976)
.+.+|+... +...+.+|...|....|.+|+.|..|+...-..--.+.....|+.| ||-|+.+.++.
T Consensus 520 iATTfINK~~~esvLlDLK~LL~EakQ~vP~~L~~L~~~~E~~~~a~~~~~kGCayCgGLGHRItdCP 587 (610)
T KOG0341|consen 520 IATTFINKNQEESVLLDLKHLLQEAKQEVPPVLAELAGPMEEETIADAGGEKGCAYCGGLGHRITDCP 587 (610)
T ss_pred eeeeeecccchHHHHHHHHHHHHHhhccCCHHHHHhCCCccccccccCCCccccccccCCCcccccCc
Confidence 999999975 5567778888889999999999988876544322223444456665 66799998774
No 7
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3e-69 Score=637.91 Aligned_cols=436 Identities=46% Similarity=0.785 Sum_probs=404.1
Q ss_pred cCCcCCCcccccCcccccccccchhhhcCCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHHHcCCCCCc
Q 002040 413 KLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPM 491 (976)
Q Consensus 413 ~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~ 491 (976)
.+..++|....+.||.++||.+++.+..++..++..++....+.+ .|..+|+|+.+|.+++|++.+++.|..+||..||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~pt 154 (545)
T PTZ00110 75 RLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTEPT 154 (545)
T ss_pred ccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCCCC
Confidence 456788888889999999999999999999999999999988875 7999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEE
Q 002040 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (976)
Q Consensus 492 ~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~ 571 (976)
|+|.++||.+++|+|+|++|+||||||++|++|++.++..++....+.+|.+|||+||++||.|++..+..|+...++.+
T Consensus 155 ~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~ 234 (545)
T PTZ00110 155 PIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRN 234 (545)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccE
Confidence 99999999999999999999999999999999999999877655566789999999999999999999999999899999
Q ss_pred EEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcE
Q 002040 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQT 651 (976)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~ 651 (976)
.+++||.....+...+..+++|||+||++|++++... ..+|.++.+|||||||+|++++|.+++..|+..+++++|+
T Consensus 235 ~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~---~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~ 311 (545)
T PTZ00110 235 TVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN---VTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQT 311 (545)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC---CCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeE
Confidence 9999999999998889999999999999999999754 3578899999999999999999999999999999999999
Q ss_pred EEEeccCcHHHHHHHHHHcC-CCeEEEeCCcc-cccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHH
Q 002040 652 VLFSATFPRQVEILARKVLN-KPVEIQVGGRS-VVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCD 728 (976)
Q Consensus 652 i~~SAT~~~~~~~l~~~~l~-~~~~i~~~~~~-~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~ 728 (976)
|+||||+|..+..++..++. .++.+.++... .....+.+.+.+.....|...|..+|.... ...++||||+++..|+
T Consensus 312 l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~ 391 (545)
T PTZ00110 312 LMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGAD 391 (545)
T ss_pred EEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHH
Confidence 99999999999999998886 57777776543 334567788888888888888888887765 5679999999999999
Q ss_pred HHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC
Q 002040 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (976)
Q Consensus 729 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~ 808 (976)
.|+..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++|||||+|++||+||+|.++..|+||+||+||+
T Consensus 392 ~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~ 471 (545)
T PTZ00110 392 FLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRA 471 (545)
T ss_pred HHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHH
Q 002040 809 GRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSF 851 (976)
Q Consensus 809 g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~ 851 (976)
|..|.|++|+++.+...+..|++.|..+.+.+|++|..|+...
T Consensus 472 G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp~~l~~~~~~~ 514 (545)
T PTZ00110 472 GAKGASYTFLTPDKYRLARDLVKVLREAKQPVPPELEKLSNER 514 (545)
T ss_pred CCCceEEEEECcchHHHHHHHHHHHHHccCCCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887654
No 8
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-68 Score=553.17 Aligned_cols=365 Identities=36% Similarity=0.616 Sum_probs=346.8
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
...+|.++++.+.+++++...+|..||++|.++||.++.|+|||+.|+||||||.+|++|++++|+..+. .+.+|
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~l 133 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFAL 133 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEE
Confidence 3468999999999999999999999999999999999999999999999999999999999999998753 48899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
||+|||+||.||...|..+...+|+.+.+++||.+...+...+.+.++|||||||+|.+++.+. +.++|..+.|+|+|
T Consensus 134 VLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T--kgf~le~lk~LVlD 211 (476)
T KOG0330|consen 134 VLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENT--KGFSLEQLKFLVLD 211 (476)
T ss_pred EecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc--cCccHHHhHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999999999865 34788999999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHH
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (976)
|||++++++|.+.+..|+..++..+|+++||||||..+..+....+.+|+.+.+.........+.|.|.+.+...|..+|
T Consensus 212 EADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 212 EADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred hHHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999888888888999999999999999999
Q ss_pred HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCc
Q 002040 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~ 784 (976)
+.+|... .++.+||||++...+..++-.|...|+.+..+||.|++..|.-+++.|++|.+.|||||++++||||||.|+
T Consensus 292 V~ll~e~-~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd 370 (476)
T KOG0330|consen 292 VYLLNEL-AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVD 370 (476)
T ss_pred HHHHHhh-cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCce
Confidence 9999875 458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhcc
Q 002040 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (976)
Q Consensus 785 ~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (976)
+|||||+|.+..+|+||+||+||+|..|.+++|++..|...+..|...+....
T Consensus 371 ~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 371 VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred EEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999888888888876554
No 9
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=9.3e-65 Score=598.33 Aligned_cols=433 Identities=31% Similarity=0.539 Sum_probs=393.4
Q ss_pred ccCCcCCCccccc-Ccccccccccchhhhc-CCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHcCCCC
Q 002040 412 EKLSIVDHSKIDY-QPFRKNFYIEVKEIAR-MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEK 489 (976)
Q Consensus 412 ~~~~~~~~~~~~~-~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~ 489 (976)
.....++|+...+ .+|.++||...+.... ++..++..+++.++|.+.|..+|.|+.+|.+++|++.+++.|...||..
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ 143 (518)
T PLN00206 64 KSRVAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEF 143 (518)
T ss_pred hccCCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCC
Confidence 3456678876665 7789999998887755 9999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCC--CCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP--VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~--~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
|||+|.++||.+++|+|+|++|+||||||++|++|++.++..... .....++++|||+||++||.|++..+..++..+
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~ 223 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL 223 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999998865321 122367899999999999999999999999888
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~ 647 (976)
++.+++++||.....++..+..+++|||+||++|++++... ...+.++.+|||||||+|++++|..++..++..+ +
T Consensus 224 ~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~---~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~ 299 (518)
T PLN00206 224 PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH---DIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-S 299 (518)
T ss_pred CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC---CccchheeEEEeecHHHHhhcchHHHHHHHHHhC-C
Confidence 99999999999999988888889999999999999998764 3578899999999999999999999999999888 5
Q ss_pred CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHH
Q 002040 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEK 726 (976)
Q Consensus 648 ~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~ 726 (976)
..|+|+||||+++.+..++..++.+++.+.++........+.+.+.+.....+...|..+|..... .+++||||+++..
T Consensus 300 ~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~ 379 (518)
T PLN00206 300 QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLG 379 (518)
T ss_pred CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchh
Confidence 689999999999999999999999999988887777777788888888877888888888765432 3589999999999
Q ss_pred HHHHHHHHHH-CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhccc
Q 002040 727 CDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (976)
Q Consensus 727 ~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~ 805 (976)
++.|+..|.. .++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||++++||+||+|.++..|+||+|||
T Consensus 380 a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRa 459 (518)
T PLN00206 380 ADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459 (518)
T ss_pred HHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 9999999975 589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHH
Q 002040 806 GRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALA 848 (976)
Q Consensus 806 gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~ 848 (976)
||.|..|.|++|+++.+...+..|++.|..+++.+|++|..+.
T Consensus 460 GR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~~ 502 (518)
T PLN00206 460 SRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIPRELANSR 502 (518)
T ss_pred ccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCCHHHHhCh
Confidence 9999999999999999999999999999999999999887644
No 10
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-62 Score=575.72 Aligned_cols=363 Identities=44% Similarity=0.740 Sum_probs=336.3
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
..|..++|+..++++|...||..|||||.++||.++.|+|++++|+||||||++|++|++..+..... ....+ +|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--RKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--cCCCc-eEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999774311 11112 9999
Q ss_pred ccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
+|||+||.|+++.+..++... ++.+++++||.+...+...+..+++|||+|||+|++++... ..++..+.++||||
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~---~l~l~~v~~lVlDE 182 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG---KLDLSGVETLVLDE 182 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC---CcchhhcCEEEecc
Confidence 999999999999999999998 79999999999999999999999999999999999999875 47899999999999
Q ss_pred cccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccc--ccCCceEEEEecCcch-HHH
Q 002040 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESD-RFL 702 (976)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~--~~~~i~q~~~~~~~~~-k~~ 702 (976)
||+|+++||...+..|+..++.++|+++||||+|..+..++..++.+|..+.+..... ....|.|.+..+.... |+.
T Consensus 183 ADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~ 262 (513)
T COG0513 183 ADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLE 262 (513)
T ss_pred HhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888875444 7788999998888765 888
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~ 782 (976)
.|..+|... ...++||||+++..|+.|+..|...|+.+..|||+|+|.+|..++..|++|.+.|||||++++||||||+
T Consensus 263 ~L~~ll~~~-~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 263 LLLKLLKDE-DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHHHHHhcC-CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 888888764 3457999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CcCchHHHHHHHhhc
Q 002040 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELS 836 (976)
Q Consensus 783 v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~i~~~l~~~ 836 (976)
+.+|||||+|.+++.|+||+|||||+|..|.+++|+++. +...+..|.+.+...
T Consensus 342 v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 342 VSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred cceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999986 888888888887555
No 11
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-63 Score=533.38 Aligned_cols=383 Identities=35% Similarity=0.535 Sum_probs=344.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
..+|.++.|+..|+.+|..+||..|||||..+||..+-|+|++.||.||||||.+|++|+|..|+-.|.. ....+|||
T Consensus 180 ~~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLV 257 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLV 257 (691)
T ss_pred hhhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEE
Confidence 4589999999999999999999999999999999999999999999999999999999999999876643 23568999
Q ss_pred EccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
|||||+||.|++..+++++.+..+.|++++||.+...|-..|...++|||+|||+|+++|.+.. .++|+++.++||||
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~--sf~ldsiEVLvlDE 335 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSP--SFNLDSIEVLVLDE 335 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCC--CccccceeEEEech
Confidence 9999999999999999999999999999999999999999999999999999999999997754 36899999999999
Q ss_pred cccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecC---cchHHH
Q 002040 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP---ESDRFL 702 (976)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~---~~~k~~ 702 (976)
||+|++.+|..++..|+..++.++|+++|||||+..+..|+...|..|+.|.+.........+.|.|...- ...+-.
T Consensus 336 ADRMLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea 415 (691)
T KOG0338|consen 336 ADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREA 415 (691)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999888777777777665332 234445
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~ 782 (976)
.|..++...+ ...+|||+.++..|..|.-.|--.|+.+.-+||.++|.+|-..+..|+++.++|||||+++++||||++
T Consensus 416 ~l~~l~~rtf-~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 416 MLASLITRTF-QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHHHhc-ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 5556665554 678999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHh-----hccCCCChHHHHHHHHHHH
Q 002040 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE-----LSEQVVPDDLKALADSFMA 853 (976)
Q Consensus 783 v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~-----~~~~~vp~~l~~l~~~~~~ 853 (976)
|.+||||++|.++..|+||+||+.|+|+.|.+++|+.+.+...+..|++.-. +.+-.||+....-+...+.
T Consensus 495 V~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ie 570 (691)
T KOG0338|consen 495 VQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIE 570 (691)
T ss_pred eeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998743 2344566654443333333
No 12
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.5e-63 Score=542.05 Aligned_cols=391 Identities=42% Similarity=0.711 Sum_probs=365.8
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCC
Q 002040 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (976)
Q Consensus 455 i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~ 534 (976)
+.+.|..+|.++.+|..-.+...+...+...+|..|||+|+.+||.|..|+++++||+||||||.+|++|++.+++....
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 46789999999999999899999999999999999999999999999999999999999999999999999999987643
Q ss_pred CCC-----CCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcC
Q 002040 535 VAA-----GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG 609 (976)
Q Consensus 535 ~~~-----~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~ 609 (976)
... +..|.+|||+|||+||.|+++++.+|....++.++.+|||.+...+...+..+|+|+|||||+|.+++...
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g- 220 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG- 220 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc-
Confidence 221 13599999999999999999999999999999999999999999999999999999999999999999764
Q ss_pred CcccccCCceEEEecCcccccc-cCCchHHHHHHHhcCC----CCcEEEEeccCcHHHHHHHHHHcCC-CeEEEeCCccc
Q 002040 610 GKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRP----DRQTVLFSATFPRQVEILARKVLNK-PVEIQVGGRSV 683 (976)
Q Consensus 610 ~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~~~~~----~~q~i~~SAT~~~~~~~l~~~~l~~-~~~i~~~~~~~ 683 (976)
...|..+.||||||||+|++ ++|.++|..|+.+... .+|+++||||+|..+..++..++.+ ++.+.++....
T Consensus 221 --~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 221 --KISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred --eeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 36789999999999999999 9999999999988754 6899999999999999999999886 88888988889
Q ss_pred ccCCceEEEEecCcchHHHHHHHHHHhhh---cCC-----cEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHH
Q 002040 684 VNKDITQLVEVRPESDRFLRLLELLGEWY---EKG-----KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755 (976)
Q Consensus 684 ~~~~i~q~~~~~~~~~k~~~l~~~l~~~~---~~~-----kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 755 (976)
...++.|.+.++....|...|+.+|.... ..+ +++|||.++..|+.|+.+|...++++..|||..++.+|..
T Consensus 299 ~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~ 378 (482)
T KOG0335|consen 299 TSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQ 378 (482)
T ss_pred ccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHH
Confidence 99999999999999999999999998655 344 8999999999999999999999999999999999999999
Q ss_pred HHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhh
Q 002040 756 TISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (976)
Q Consensus 756 ~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (976)
++..|++|.+.|||||+|+++|||||+|++|||||+|.+..+|+||||||||.|+.|.++.|+...+......|++.|..
T Consensus 379 al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~e 458 (482)
T KOG0335|consen 379 ALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTE 458 (482)
T ss_pred HHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChHHHHHH
Q 002040 836 SEQVVPDDLKALA 848 (976)
Q Consensus 836 ~~~~vp~~l~~l~ 848 (976)
+++.+|.+|.+++
T Consensus 459 a~q~vP~wl~~~~ 471 (482)
T KOG0335|consen 459 ANQEVPQWLSELS 471 (482)
T ss_pred hcccCcHHHHhhh
Confidence 9999999998743
No 13
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-61 Score=485.06 Aligned_cols=375 Identities=34% Similarity=0.579 Sum_probs=346.2
Q ss_pred CCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 002040 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (976)
Q Consensus 461 ~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~ 540 (976)
.-..++.+|+++||...++..+...||.+|+.+|+.||+.|+.|+|+|+++..|+|||.+|.+.++..+.-. ...
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~ 95 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRE 95 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cce
Confidence 335678899999999999999999999999999999999999999999999999999999998888665432 224
Q ss_pred CeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 541 ~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
.++|||.|||+||.|+.+.+..++..+++.+..+.||.+..+.+..+..|.++|.+|||++++++.... ..-..+.+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~---L~tr~vkm 172 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS---LRTRAVKM 172 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc---ccccceeE
Confidence 689999999999999999999999999999999999999999999999999999999999999998754 45677999
Q ss_pred EEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcc-h
Q 002040 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-D 699 (976)
Q Consensus 621 vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~-~ 699 (976)
|||||||.|++.||..++..|+..++|+.|++++|||+|..+.....+|+.+|+.+.+.....+...|.|++.-.... .
T Consensus 173 lVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~Eew 252 (400)
T KOG0328|consen 173 LVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEW 252 (400)
T ss_pred EEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhh
Confidence 999999999999999999999999999999999999999999999999999999999998888888899888666554 4
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCC
Q 002040 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (976)
Q Consensus 700 k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlD 779 (976)
|+..|..+... +.-.+++|||||+..++.|.+.+...++.+.++||+|++.+|+.++..|++|..+|||+|++.++|+|
T Consensus 253 KfdtLcdLYd~-LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiD 331 (400)
T KOG0328|consen 253 KFDTLCDLYDT-LTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGID 331 (400)
T ss_pred hHhHHHHHhhh-hehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCC
Confidence 88888877654 34568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHH
Q 002040 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (976)
Q Consensus 780 i~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (976)
+|.|++|||||.|.+.+.|+||+||.||.|++|.++-|+..++-..+.+|.+.+.......|..+
T Consensus 332 v~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~nv 396 (400)
T KOG0328|consen 332 VQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPMNV 396 (400)
T ss_pred cceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccchh
Confidence 99999999999999999999999999999999999999999999999999999888777777543
No 14
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=3.4e-60 Score=509.95 Aligned_cols=373 Identities=33% Similarity=0.562 Sum_probs=339.9
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
+...|....|++..+.+|+.+||..+|++|..+|+.++.|+|+|+.|.||+|||++|++|+++++.+.+... .++..||
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~-r~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKP-RNGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCC-CCCeeEE
Confidence 345678889999999999999999999999999999999999999999999999999999999999876543 3677899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEe
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVl 623 (976)
||||||+||.|++.+++.+.+.. ++.+..+.||+........+..+++|+|+|||+|+++|.+..+. .+..+.++||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f--~~r~~k~lvl 236 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGF--LFRNLKCLVL 236 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcc--hhhccceeEe
Confidence 99999999999999999999988 99999999999988888888889999999999999999887653 3455689999
Q ss_pred cCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCC-CeEEEeCC--cccccCCceEEEEecCcchH
Q 002040 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNK-PVEIQVGG--RSVVNKDITQLVEVRPESDR 700 (976)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~-~~~i~~~~--~~~~~~~i~q~~~~~~~~~k 700 (976)
||||+++++||...+..|+..++..+|+++||||.|+.+..++...+.. |+++.+.. .......+.|.+.+.+...+
T Consensus 237 DEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~ 316 (543)
T KOG0342|consen 237 DEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSR 316 (543)
T ss_pred ecchhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccch
Confidence 9999999999999999999999999999999999999999999988866 77776644 34456678899999999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCC
Q 002040 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (976)
Q Consensus 701 ~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi 780 (976)
|..++.+|.+.....++||||+|...+..++..|....++|..|||+++|..|..++..|.+.+..|||||+|++||+|+
T Consensus 317 f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 317 FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 99999999998777899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCC
Q 002040 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (976)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (976)
|+|++||.||+|.++.+||||+|||||.|..|.+++|+.+++..++..|. .+.+.....|
T Consensus 397 P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK-~lpl~~~e~~ 456 (543)
T KOG0342|consen 397 PDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK-KLPLEEFEFP 456 (543)
T ss_pred CCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh-hCCCcccCCC
Confidence 99999999999999999999999999999999999999999888877776 4444444444
No 15
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-60 Score=487.86 Aligned_cols=366 Identities=36% Similarity=0.575 Sum_probs=335.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
...|..+||++++.+.|+.+|+.+|||+|..|||.|+.|+|+|++|.||||||++|.+|+++.+...| +|..+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999998764 5788999
Q ss_pred EccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCc-ccccCCceEEEec
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGK-ITNLRRVTYLVMD 624 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~-~~~l~~~~~vVlD 624 (976)
++|||+||.|+.+.|.-+.+.+++++.+++||...-.+...|....+|||+|||+|.+++..+.+. ...+.++.|+|||
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 999999999999999999999999999999999999998899999999999999999999776332 3457899999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCC--eEEEeCCcccccCCceEEEEecCcchHHH
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKP--VEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~--~~i~~~~~~~~~~~i~q~~~~~~~~~k~~ 702 (976)
||++|++.+|...+..++..++..+|+++||||++..+..+.......+ ..+.......+...+.|.+.+++...+-.
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 9999999999999999999999999999999999999887766555553 33333334445667888899999999999
Q ss_pred HHHHHHHhhhc--CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCC
Q 002040 703 RLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (976)
Q Consensus 703 ~l~~~l~~~~~--~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi 780 (976)
+|+.+|..+.. .+.++||+++..+|+.|+..|...++.++.+||.|+|.+|...+..|+++..+|||||+++++||||
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999988776 6799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhc
Q 002040 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (976)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (976)
|.|.+|||||.|.+|.+|+||+||+.|+|+.|.++.|+++.|...+..|...+...
T Consensus 321 P~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 321 PTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred CceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998888888876544
No 16
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-58 Score=533.98 Aligned_cols=368 Identities=34% Similarity=0.561 Sum_probs=331.4
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCC--CCCCCeE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPVG 543 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~--~~~~~~v 543 (976)
-.+|.+++|++.++++|..+||..|||+|.++||.+++|+|+|++||||||||++|++|++..+...+... ...++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36899999999999999999999999999999999999999999999999999999999999987654321 1346899
Q ss_pred EEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEe
Q 002040 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 544 LIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVl 623 (976)
|||+||++||.|++..+..++..+++.+.+++||.....+...+..+++||||||++|.+++... ...+..+.+|||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~---~~~l~~v~~lVi 163 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN---HINLGAIQVVVL 163 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcccccccEEEE
Confidence 99999999999999999999999999999999999988888888888999999999999998653 357889999999
Q ss_pred cCcccccccCCchHHHHHHHhcCC--CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHH
Q 002040 624 DEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 701 (976)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~--~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~ 701 (976)
||||+|++++|...+..++..++. .+++++||||++..+..++..++.+|..+.+.........+.+.+.+.....|.
T Consensus 164 DEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~ 243 (423)
T PRK04837 164 DEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKM 243 (423)
T ss_pred ecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHH
Confidence 999999999999999999998874 567899999999999999999999998887766555556677777777677788
Q ss_pred HHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCC
Q 002040 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (976)
Q Consensus 702 ~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~ 781 (976)
..|..++... ...++||||+++..|+.|+..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++|||||
T Consensus 244 ~~l~~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip 322 (423)
T PRK04837 244 RLLQTLIEEE-WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIP 322 (423)
T ss_pred HHHHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCcc
Confidence 7777777653 457899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhcc
Q 002040 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (976)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (976)
++++||+||+|.++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....
T Consensus 323 ~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~ 378 (423)
T PRK04837 323 AVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSI 378 (423)
T ss_pred ccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999988888888877665553
No 17
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-59 Score=495.05 Aligned_cols=359 Identities=34% Similarity=0.563 Sum_probs=322.3
Q ss_pred cccccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 467 ~~~~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
..|..++ |+++|++++..+||...||+|..+||.++.++|+++.++||||||++|++|++..+............-+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 4566665 45999999999999999999999999999999999999999999999999999999654322221124689
Q ss_pred EEccCHHHHHHHHHHHHHHHhh-cCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEE
Q 002040 545 IMAPTRELVQQIHSDIRKFAKV-MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~-~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vV 622 (976)
||+|||+||.||.+.+..|... .++++.+++||....+.+..++. +++|+|||||+|.+++..... .+++.++.++|
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~-~l~~rsLe~LV 162 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAE-KLSFRSLEILV 162 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhh-hccccccceEE
Confidence 9999999999999999999887 68999999999999999888775 678999999999999977442 24567999999
Q ss_pred ecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccc--ccCCceEEEEecCcchH
Q 002040 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRPESDR 700 (976)
Q Consensus 623 lDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~--~~~~i~q~~~~~~~~~k 700 (976)
|||||++++|||..++..|+..++.++.+=+||||....+..++...+.+|+.+.+..... .+..+...+.++.+..|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999999887765 66667788889999999
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccC
Q 002040 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (976)
Q Consensus 701 ~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~Gl 778 (976)
+..|+.+|.. ....++|||++|...++.....|... ++.++.+||.|.+..|..++..|.+..-.||+||++++|||
T Consensus 243 ~~~lv~~L~~-~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 243 LSQLVHLLNN-NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHHHhc-cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 9999999987 35679999999999999988888764 67899999999999999999999998889999999999999
Q ss_pred CCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchH
Q 002040 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (976)
Q Consensus 779 Di~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~ 827 (976)
|||+|++||+||+|.++..|+||+|||||+|+.|.+++|+.+.+..|..
T Consensus 322 Dip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYve 370 (567)
T KOG0345|consen 322 DIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVE 370 (567)
T ss_pred CCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHH
Confidence 9999999999999999999999999999999999999999986655544
No 18
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.2e-60 Score=480.38 Aligned_cols=368 Identities=31% Similarity=0.576 Sum_probs=346.0
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
..|++++|...++..+...||..|+|+|.++||.+++|+|+|+-|..|+|||.+|++|+++.+... .+.-+++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999987643 345689999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+|||+||.|+...++.+++.+++.+.+.+||++....+-.+..+++++|+|||++++++.. .+..++++.++|+|||
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K---gVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK---GVADLSDCVILVMDEA 236 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc---ccccchhceEEEechh
Confidence 9999999999999999999999999999999999999999999999999999999999865 4567899999999999
Q ss_pred ccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHH
Q 002040 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~ 706 (976)
|.+++..|.+.+..++..++..+|++++|||||-.+..+...++.+|..|++- .......+.|++.++.+..|+..|-.
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM-~eLtl~GvtQyYafV~e~qKvhCLnt 315 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLM-EELTLKGVTQYYAFVEERQKVHCLNT 315 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehh-hhhhhcchhhheeeechhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999998875 34566789999999999999988888
Q ss_pred HHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEE
Q 002040 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (976)
Q Consensus 707 ~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~V 786 (976)
++..+ .-.+.|||||+...++.|+..+.+.||+|..+|+.|.|..|..++..|++|.++.||||+.+.+||||+.+++|
T Consensus 316 LfskL-qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvV 394 (459)
T KOG0326|consen 316 LFSKL-QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVV 394 (459)
T ss_pred HHHHh-cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEE
Confidence 77764 45689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHH
Q 002040 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDL 844 (976)
Q Consensus 787 I~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l 844 (976)
||||+|.+.++|+||+||.||.|..|.++.|++-+|...+..|...|.....++|..+
T Consensus 395 INFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~i 452 (459)
T KOG0326|consen 395 INFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSNI 452 (459)
T ss_pred EecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCcC
Confidence 9999999999999999999999999999999999999999999999999989998643
No 19
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-58 Score=500.27 Aligned_cols=364 Identities=32% Similarity=0.533 Sum_probs=333.2
Q ss_pred CcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeE
Q 002040 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~v 543 (976)
..+..|.+|+|+...+..|+..+|..||.+|.++||..++|+|+|+.|.||||||++|++|+|.+|.... +....|.-|
T Consensus 66 ~~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~~DGlGa 144 (758)
T KOG0343|consen 66 TTIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSPTDGLGA 144 (758)
T ss_pred hhhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-CCCCCCcee
Confidence 3457899999999999999999999999999999999999999999999999999999999999997542 345678889
Q ss_pred EEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEe
Q 002040 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 544 LIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVl 623 (976)
|||.|||+||.|++..+.++++..++.+.++.||.........+. +++|+|||||+|+.++..+. .++..++.++||
T Consensus 145 lIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~--~f~t~~lQmLvL 221 (758)
T KOG0343|consen 145 LIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENP--NFSTSNLQMLVL 221 (758)
T ss_pred EEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcC--CCCCCcceEEEe
Confidence 999999999999999999999999999999999998877766665 48999999999999997653 255678899999
Q ss_pred cCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCc--ccccCCceEEEEecCcchHH
Q 002040 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR--SVVNKDITQLVEVRPESDRF 701 (976)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~--~~~~~~i~q~~~~~~~~~k~ 701 (976)
||||+|++|||...+..|+.++++.+|+++||||.+..+..+++..+.+|.+|.+... ...+..+.|.|.+++...|+
T Consensus 222 DEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki 301 (758)
T KOG0343|consen 222 DEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKI 301 (758)
T ss_pred ccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHH
Confidence 9999999999999999999999999999999999999999999999999988887632 45677899999999999999
Q ss_pred HHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCC
Q 002040 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (976)
Q Consensus 702 ~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlD 779 (976)
..|..+|..+. ..++|||+.|.+.+..++..|... |+++.++||.|+|..|..++..|......||+||++++||||
T Consensus 302 ~~L~sFI~shl-k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLD 380 (758)
T KOG0343|consen 302 DMLWSFIKSHL-KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLD 380 (758)
T ss_pred HHHHHHHHhcc-ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCC
Confidence 99999998754 678999999999999999999875 899999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCC-cCchHHHHHH
Q 002040 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKA 832 (976)
Q Consensus 780 i~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~ 832 (976)
+|.|++||.||+|.+..+|+||+||+.|.+..|.+++|+++.+ +.++..|.+.
T Consensus 381 FpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 381 FPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred CcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999987 5555555554
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.5e-57 Score=539.08 Aligned_cols=363 Identities=38% Similarity=0.640 Sum_probs=332.6
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
..+|.+++|++.++++|..+||..|+|+|.++||.++.++|+|++|+||||||++|++|++..+... ..++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3569999999999999999999999999999999999999999999999999999999999887542 24689999
Q ss_pred EccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
||||++||.|++..+..|...+ ++.++.+|||.....++..+..+++|||+||++|++++... ...|+++.+||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~---~l~l~~l~~lVlD 156 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG---TLDLSKLSGLVLD 156 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---CcchhhceEEEec
Confidence 9999999999999999998775 79999999999999998889889999999999999998754 2568899999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHH
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (976)
|||.|++++|...+..|+..++...|+++||||+|..+..++..++.+|..+.+.........+.+.+.......|...|
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L 236 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEAL 236 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHH
Confidence 99999999999999999999999999999999999999999999999998888776666667788888777777888888
Q ss_pred HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCc
Q 002040 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~ 784 (976)
..+|... ...++||||+++..+..|+..|...|+.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|+
T Consensus 237 ~~~L~~~-~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~ 315 (629)
T PRK11634 237 VRFLEAE-DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS 315 (629)
T ss_pred HHHHHhc-CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC
Confidence 8887653 456899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhcc
Q 002040 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (976)
Q Consensus 785 ~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (976)
+|||||+|.++..|+||+|||||+|+.|.|++|+++.+...+..|.+.+....
T Consensus 316 ~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i 368 (629)
T PRK11634 316 LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTI 368 (629)
T ss_pred EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999988888888887765543
No 21
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.7e-57 Score=539.38 Aligned_cols=368 Identities=36% Similarity=0.598 Sum_probs=331.3
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCC--CCCCCeE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPVG 543 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~--~~~~~~v 543 (976)
..+|.+++|++.|++.|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++..+...+... ...++++
T Consensus 8 ~~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~ra 87 (572)
T PRK04537 8 DLTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRA 87 (572)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 34799999999999999999999999999999999999999999999999999999999999987543221 1235899
Q ss_pred EEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEe
Q 002040 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 544 LIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVl 623 (976)
|||+||++||.|++..+..|+..+++.+..++||.....+...+..+++|||+||++|++++... ....+..+.+|||
T Consensus 88 LIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~--~~~~l~~v~~lVi 165 (572)
T PRK04537 88 LILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH--KVVSLHACEICVL 165 (572)
T ss_pred EEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--cccchhheeeeEe
Confidence 99999999999999999999999999999999999998888888888999999999999988653 2356788999999
Q ss_pred cCcccccccCCchHHHHHHHhcCC--CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHH
Q 002040 624 DEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRF 701 (976)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~--~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~ 701 (976)
||||+|++++|...+..|+..++. .+|+|+||||++..+..++..++..|..+.+.........+.+.+.+.....++
T Consensus 166 DEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~ 245 (572)
T PRK04537 166 DEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQ 245 (572)
T ss_pred cCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHH
Confidence 999999999999999999998876 789999999999999999999999987777666555666778888877777888
Q ss_pred HHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCC
Q 002040 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (976)
Q Consensus 702 ~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~ 781 (976)
..|+.+|.. ....++||||+++..|+.|+..|...++.+..|||+|++.+|..+++.|++|.++|||||+++++|||||
T Consensus 246 ~~L~~ll~~-~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 246 TLLLGLLSR-SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHHHhc-ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 888777754 3456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhc
Q 002040 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (976)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (976)
+|++|||||+|+++..|+||+||+||.|..|.|++|+++.+...+..|.+.+...
T Consensus 325 ~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~ 379 (572)
T PRK04537 325 GVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQK 379 (572)
T ss_pred CCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999988887888887776544
No 22
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.3e-57 Score=528.13 Aligned_cols=365 Identities=38% Similarity=0.674 Sum_probs=329.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCC-CCCCeEEEE
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAA-GDGPVGLIM 546 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~-~~~~~vLIl 546 (976)
+|..++|++.++..|..+||..|||+|.++||.++.|+|+|+++|||||||++|++|++..+........ ...+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999999875432211 234589999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+||++||.|+++.+..++..+++.+..++||.+...+...+..+++||||||++|++++.... ..++.+.+||||||
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~---~~l~~v~~lViDEa 158 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNA---VKLDQVEILVLDEA 158 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCC---cccccceEEEeecH
Confidence 999999999999999999999999999999999998888888889999999999999886532 56889999999999
Q ss_pred ccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHH
Q 002040 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE 706 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~ 706 (976)
|+|++++|...+..++..++...|+|+||||++..+..++..++.+|..+.+.........+.+.+.+.....+...|..
T Consensus 159 h~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 159 DRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HHHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888776666666677787777776666655555
Q ss_pred HHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEE
Q 002040 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (976)
Q Consensus 707 ~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~V 786 (976)
++.. ....++||||+++..++.|+..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||||+|++|
T Consensus 239 l~~~-~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~V 317 (456)
T PRK10590 239 MIGK-GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHV 317 (456)
T ss_pred HHHc-CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEE
Confidence 5543 344689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhc
Q 002040 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (976)
Q Consensus 787 I~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (976)
|+|++|.++..|+||+||+||+|..|.|++|++..+...+..|.+.+...
T Consensus 318 I~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~ 367 (456)
T PRK10590 318 VNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKE 367 (456)
T ss_pred EEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888888888876544
No 23
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.4e-57 Score=527.55 Aligned_cols=359 Identities=36% Similarity=0.619 Sum_probs=327.7
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
.+|..++|++.++.+|..+||..|||+|.+|||.++.|+|+|++||||||||++|++|++..+... ..++++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~-----~~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK-----RFRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc-----cCCceEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999988542 235689999
Q ss_pred ccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
|||++||.|+...+..++..+ ++.+..++||.+...+...+..+++|+||||++|.+++.... ..+.++.+|||||
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~---~~l~~l~~lViDE 155 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGT---LDLDALNTLVLDE 155 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCC---ccHHHCCEEEEEC
Confidence 999999999999999988765 789999999999999998999999999999999999987532 5678899999999
Q ss_pred cccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHH
Q 002040 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (976)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~ 705 (976)
||+|++++|...+..++..+++.+|+|+||||+|+.+..++..++.+|..+.+.... ....+.+.+.......++..|.
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~ 234 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQ 234 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776543 3445778887777777888888
Q ss_pred HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE
Q 002040 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (976)
Q Consensus 706 ~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~ 785 (976)
.+|... ..+++||||+++..++.++..|...++.+..+||+|++.+|..++..|++|.++|||||+++++|||||++++
T Consensus 235 ~ll~~~-~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~ 313 (460)
T PRK11776 235 RLLLHH-QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEA 313 (460)
T ss_pred HHHHhc-CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCe
Confidence 877643 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhh
Q 002040 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (976)
Q Consensus 786 VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (976)
||+|++|.++..|+||+|||||+|..|.|++|+++.+...+..|.+.+..
T Consensus 314 VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 314 VINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999887777777776654
No 24
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.5e-57 Score=484.66 Aligned_cols=367 Identities=34% Similarity=0.572 Sum_probs=321.2
Q ss_pred CcccccccCCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCC-CCCCCCCC
Q 002040 464 KPIKTWHQTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP-PVAAGDGP 541 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~-~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~-~~~~~~~~ 541 (976)
-.-..|..+||.+.+...|. .+++..||.+|.++||.|++|+|++|.++||||||++|++|++.+|.... .+....|+
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~ 212 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGP 212 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCc
Confidence 33457999999999999998 59999999999999999999999999999999999999999999998654 34566899
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhcC-cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVMG-VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~~-~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
.+|||||||+||.|+|+.+.++.+.+. +..+.+.||.........|.+|++|+|+|||+|+++|.+. ..+.++.+.+
T Consensus 213 ~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--~~i~~s~LRw 290 (708)
T KOG0348|consen 213 YALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--KSIKFSRLRW 290 (708)
T ss_pred eEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc--chheeeeeeE
Confidence 999999999999999999999987654 4445678999888888999999999999999999999765 3456788999
Q ss_pred EEecCcccccccCCchHHHHHHHhcC-------------CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCC-------
Q 002040 621 LVMDEADRMFDMGFEPQITRIVQNIR-------------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG------- 680 (976)
Q Consensus 621 vVlDEah~~~~~~f~~~i~~il~~~~-------------~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~------- 680 (976)
||+||||+++++||...|..|+..+. +..|.+++|||++..+..|+...+.+|+.|....
T Consensus 291 lVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p 370 (708)
T KOG0348|consen 291 LVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNP 370 (708)
T ss_pred EEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCc
Confidence 99999999999999999999988762 2368899999999999999999999999887211
Q ss_pred ------------------cccccCCceEEEEecCcchHHHHHHHHHHhhh---cCCcEEEEecCHHHHHHHHHHHHHC--
Q 002040 681 ------------------RSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH-- 737 (976)
Q Consensus 681 ------------------~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~---~~~kvLIF~~s~~~~~~l~~~L~~~-- 737 (976)
....+..+.|.|.++++.-++..|..+|.... ...++|||+.+...++.-+..|...
T Consensus 371 ~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~ 450 (708)
T KOG0348|consen 371 KDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALL 450 (708)
T ss_pred chhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhh
Confidence 01234456788889999889888888887644 3458999999999999888777643
Q ss_pred --------------------CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHH
Q 002040 738 --------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYED 797 (976)
Q Consensus 738 --------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~ 797 (976)
+..+..+||+|.|.+|..+++.|......||+||+|++||||+|.|.+||.||+|.++++
T Consensus 451 ~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ad 530 (708)
T KOG0348|consen 451 SHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTAD 530 (708)
T ss_pred cccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHH
Confidence 356889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEecCCCcCchHHHHHH
Q 002040 798 YVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (976)
Q Consensus 798 y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~ 832 (976)
|+||+||+.|+|.+|.+++|+.|.+..|+..|...
T Consensus 531 ylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 531 YLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 99999999999999999999999988877666554
No 25
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.2e-55 Score=510.56 Aligned_cols=362 Identities=36% Similarity=0.586 Sum_probs=323.0
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
+|.+++|++.+++.|..+||..|+++|.++|+.++.|+|+|++||||+|||++|++|++.++...+.. ...++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~-~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRR-KSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhcccc-CCCCceEEEEC
Confidence 68999999999999999999999999999999999999999999999999999999999998764321 23357899999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 548 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
||++||.|+++.+..++..+++.+..++||.....+...+..+++|||+||++|++++.... ..+..+.+|||||||
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~---~~~~~v~~lViDEah 157 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEEN---FDCRAVETLILDEAD 157 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---cCcccCCEEEEECHH
Confidence 99999999999999999999999999999999988888888889999999999999986543 567889999999999
Q ss_pred cccccCCchHHHHHHHhcCCCCcEEEEeccCcH-HHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc-chHHHHHH
Q 002040 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLRLL 705 (976)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~-~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~-~~k~~~l~ 705 (976)
+|++++|...+..+...++...|+++||||++. .+..+...++.+|+.+.+.........+.+.+..... ..+...|.
T Consensus 158 ~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~ 237 (434)
T PRK11192 158 RMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLC 237 (434)
T ss_pred HHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHH
Confidence 999999999999999999999999999999985 5788888889999888776655556667777665553 45555555
Q ss_pred HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE
Q 002040 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (976)
Q Consensus 706 ~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~ 785 (976)
.++.. ...+++||||++...|..|+..|...++.+..+||+|++.+|..++..|++|.++|||||+++++|||||++++
T Consensus 238 ~l~~~-~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~ 316 (434)
T PRK11192 238 HLLKQ-PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSH 316 (434)
T ss_pred HHHhc-CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCE
Confidence 55543 34579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHh
Q 002040 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (976)
Q Consensus 786 VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (976)
||+|++|.+...|+||+||+||+|..|.|++|++..+...+..|.+.+.
T Consensus 317 VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 317 VINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred EEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999888777777766543
No 26
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.6e-57 Score=486.34 Aligned_cols=373 Identities=32% Similarity=0.525 Sum_probs=321.1
Q ss_pred CCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCC------
Q 002040 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV------ 535 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~------ 535 (976)
+..++.|.+|+|+..++.+|..+||..||+||.-.||+++.| .|+|+.|.||||||++|.+||+..+......
T Consensus 177 ~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~ 256 (731)
T KOG0347|consen 177 KVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSN 256 (731)
T ss_pred ccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhh
Confidence 566889999999999999999999999999999999999999 7999999999999999999999955432111
Q ss_pred --CCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCccc
Q 002040 536 --AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKIT 613 (976)
Q Consensus 536 --~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~ 613 (976)
.....|.+||++|||+||.|+.+.|..++...++.+..++||.....|-..|....+|||+|||+|..++......+.
T Consensus 257 ~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~ 336 (731)
T KOG0347|consen 257 TSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLG 336 (731)
T ss_pred HHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhh
Confidence 111234599999999999999999999999999999999999999999888888899999999999999988776677
Q ss_pred ccCCceEEEecCcccccccCCchHHHHHHHhcC-----CCCcEEEEeccCcHH---------------------HHHHHH
Q 002040 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-----PDRQTVLFSATFPRQ---------------------VEILAR 667 (976)
Q Consensus 614 ~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~-----~~~q~i~~SAT~~~~---------------------~~~l~~ 667 (976)
++..+.++||||||+|+..|+...+..|+..+. ..+|+++||||++-. ++.+..
T Consensus 337 ~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 337 NFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 899999999999999999998888888887765 568999999997422 333333
Q ss_pred H--HcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceecc
Q 002040 668 K--VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (976)
Q Consensus 668 ~--~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lh 745 (976)
. +..+|.+|.+.....+...+....+.|+...|-.+|+.+|..+ +|++|||||++..+..|+-+|...+++.+.||
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry--PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY--PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec--CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 3 3355666665554444444444444556666666666666654 79999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCc
Q 002040 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (976)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 825 (976)
+.|.|.+|-..++.|++....|||||+||+||||||+|.+||||-.|.+.+.|+||.||++|++..|..++|+.|.+...
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred hHHHHHHHhhcc
Q 002040 826 SPDLVKALELSE 837 (976)
Q Consensus 826 ~~~i~~~l~~~~ 837 (976)
+..|++-|....
T Consensus 575 ~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 575 LKKLCKTLKKKE 586 (731)
T ss_pred HHHHHHHHhhcc
Confidence 889998886553
No 27
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-55 Score=462.45 Aligned_cols=367 Identities=31% Similarity=0.519 Sum_probs=329.2
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCC-CCCCCCeEEE
Q 002040 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLI 545 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~-~~~~~~~vLI 545 (976)
.+|++++|.+.|++++.++||.+||-+|..|||.++.|+|+++.|.||||||.+|++|+++.|...... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999876544 3446899999
Q ss_pred EccCHHHHHHHHHHHHHHHhhcC--cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEe
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVl 623 (976)
|+||++||.|+|+.+.++....+ ++++.+....+.......|...++|||+||+.|+.++.... ...+..+.++||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~--~~~~~~l~~LVv 176 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGV--LEYLDSLSFLVV 176 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhcc--chhhhheeeEEe
Confidence 99999999999999998876653 55566665555555556777789999999999999987643 356788999999
Q ss_pred cCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccc-cCCceEEEEecCcchHHH
Q 002040 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPESDRFL 702 (976)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~-~~~i~q~~~~~~~~~k~~ 702 (976)
||||.++..||...+..+...+++..|.++||||+...+..+-..++++|+.+.+.....+ +..+.|+...+...+|+.
T Consensus 177 DEADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKfl 256 (569)
T KOG0346|consen 177 DEADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFL 256 (569)
T ss_pred chhhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHH
Confidence 9999999999999999999999999999999999999999999999999999888766554 456788888888999999
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC----------
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS---------- 772 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~---------- 772 (976)
.++.+|.-..-.|++|||+|++..|..|.-.|...|+..++++|.||...|-.++..|+.|-++|||||+
T Consensus 257 llyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 257 LLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 9999998877889999999999999999999999999999999999999999999999999999999998
Q ss_pred -------------------------cccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchH
Q 002040 773 -------------------------VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSP 827 (976)
Q Consensus 773 -------------------------v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~ 827 (976)
-++||||+.+|.+|||||+|.+...|+||+|||+|++++|++++|+.+.+.....
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~ 416 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKE 416 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhh
Confidence 1358999999999999999999999999999999999999999999998777555
Q ss_pred HHHHHHhh
Q 002040 828 DLVKALEL 835 (976)
Q Consensus 828 ~i~~~l~~ 835 (976)
.|...+..
T Consensus 417 ~le~~~~d 424 (569)
T KOG0346|consen 417 SLESILKD 424 (569)
T ss_pred HHHHHHhh
Confidence 55555543
No 28
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.2e-54 Score=503.02 Aligned_cols=369 Identities=35% Similarity=0.577 Sum_probs=328.5
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCC--CCCCCe
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPV 542 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~--~~~~~~ 542 (976)
....|..++|++.+.++|..+||..|+++|.++|+.++.|+|+|++++||||||++|++|++..+...+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 346789999999999999999999999999999999999999999999999999999999999987653211 112579
Q ss_pred EEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEE
Q 002040 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (976)
Q Consensus 543 vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~v 621 (976)
+|||+||++||.|++..+..++..+++.+..++||.....+...+.. .++|||+||++|+.++... ...|.++.+|
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~---~~~l~~l~~l 241 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG---EVHLDMVEVM 241 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC---CcccccCceE
Confidence 99999999999999999999999899999999999888877777654 5899999999998877543 2568889999
Q ss_pred EecCcccccccCCchHHHHHHHhcCC--CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcch
Q 002040 622 VMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD 699 (976)
Q Consensus 622 VlDEah~~~~~~f~~~i~~il~~~~~--~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~ 699 (976)
||||||.+++++|...+..++..+.. ..|+|+||||++..+..++..++.++..+.+.........+.+.+.......
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 321 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD 321 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchh
Confidence 99999999999999999999998854 5799999999999999999999999988877666666666777777777777
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCC
Q 002040 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (976)
Q Consensus 700 k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlD 779 (976)
+...|..++... ...++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|.+.|||||+++++|||
T Consensus 322 k~~~l~~ll~~~-~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GID 400 (475)
T PRK01297 322 KYKLLYNLVTQN-PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIH 400 (475)
T ss_pred HHHHHHHHHHhc-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCc
Confidence 777777776542 3468999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhcc
Q 002040 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (976)
Q Consensus 780 i~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (976)
|+++++||+|++|.+...|+||+||+||.|..|.+++|++..|..++..+.+.+....
T Consensus 401 i~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~ 458 (475)
T PRK01297 401 IDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKI 458 (475)
T ss_pred ccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999988888888888776654
No 29
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.4e-52 Score=482.77 Aligned_cols=368 Identities=33% Similarity=0.570 Sum_probs=322.8
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
.+.+|.++++++.+.++|..+||..|+|+|.++|+.++.|+|+|++||||||||++|++|++.++... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887532 2467899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
||+||++||.|+...+..++...++.+..++||.....++..+..+++|+|+||++|.+++.... ..+.++++||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~---~~l~~i~lvViD 177 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRH---LRVDDLKLFILD 177 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCC---cccccccEEEEe
Confidence 99999999999999999999888899999999998888888888889999999999998886543 468889999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc-chHHHH
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SDRFLR 703 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~-~~k~~~ 703 (976)
|||++++.+|...+..++..+++..|+|++|||+|+.+..+...++..|..+.+.........+.+.+..... ..+...
T Consensus 178 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (401)
T PTZ00424 178 EADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDT 257 (401)
T ss_pred cHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHH
Confidence 9999999999999999999999999999999999999988888999888777665555455556665554443 334444
Q ss_pred HHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCC
Q 002040 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL 783 (976)
Q Consensus 704 l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v 783 (976)
+..++.. ....++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++
T Consensus 258 l~~~~~~-~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 258 LCDLYET-LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHHHh-cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 5544433 345689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCC
Q 002040 784 ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (976)
Q Consensus 784 ~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (976)
++||+|++|.+...|+||+||+||.|..|.|++|+++.+...+..+.+.+.......|
T Consensus 337 ~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 337 SLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred CEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999999999999999999999999888777777776655444443
No 30
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-52 Score=455.65 Aligned_cols=401 Identities=33% Similarity=0.547 Sum_probs=348.4
Q ss_pred HHHHHhhcCceeccCCCCCccccccc----CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHH
Q 002040 446 VSAYRKQLELKIHGKDVPKPIKTWHQ----TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 446 ~~~~~~~~~i~~~g~~~p~pi~~~~~----~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~ 521 (976)
....|+.+.+.+.|..+|+|+.+|.+ +.+...+++.+...+|..|+|+|.+|||.++.+++++.|||||||||++|
T Consensus 111 ~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 111 LLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAF 190 (593)
T ss_pred cccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhh
Confidence 44567788899999999999999997 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH--hhcCcEEEEeeCCCChHHHH-HHHhcCCeEEEeCc
Q 002040 522 VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA--KVMGVRCVPVYGGSGVAQQI-SELKRGTEIVVCTP 598 (976)
Q Consensus 522 ~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~--~~~~~~~~~~~gg~~~~~~~-~~l~~~~~Iiv~Tp 598 (976)
++|++.+|..........|-+++|+.||++||.|++.++.++. ...++.+..+.......... ......++|+|+||
T Consensus 191 ~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP 270 (593)
T KOG0344|consen 191 NLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTP 270 (593)
T ss_pred hhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCH
Confidence 9999999987643333557899999999999999999999998 55555554433322111111 11122479999999
Q ss_pred hhHHHHHHhcCCcccccCCceEEEecCccccccc-CCchHHHHHHHhcC-CCCcEEEEeccCcHHHHHHHHHHcCCCeEE
Q 002040 599 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (976)
Q Consensus 599 ~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~-~f~~~i~~il~~~~-~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i 676 (976)
.+|..++.... ....|..+.++|+||||+++.. .|..|+..|+..+. ++..+-+||||++..++.++...+.+++.+
T Consensus 271 ~ri~~~~~~~~-~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~v 349 (593)
T KOG0344|consen 271 MRIVGLLGLGK-LNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRV 349 (593)
T ss_pred HHHHHHhcCCC-ccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeE
Confidence 99988885532 2247889999999999999998 89999999988775 556677899999999999999999999999
Q ss_pred EeCCcccccCCceEEE-EecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHH-HHCCCCceeccCCCCHHHHH
Q 002040 677 QVGGRSVVNKDITQLV-EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL-LKHGYPCLSLHGAKDQTDRE 754 (976)
Q Consensus 677 ~~~~~~~~~~~i~q~~-~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~ 754 (976)
.++..+.....|.|.. .+.....|+..+.+++.... ..++|||+++.+.|..|+..| .-.++.+.+|||..++.+|.
T Consensus 350 ivg~~~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~-~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrd 428 (593)
T KOG0344|consen 350 IVGLRNSANETVDQELVFCGSEKGKLLALRQLVASGF-KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRD 428 (593)
T ss_pred EEecchhHhhhhhhhheeeecchhHHHHHHHHHhccC-CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHH
Confidence 9998888777777765 45567789999999888753 569999999999999999999 66789999999999999999
Q ss_pred HHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHh
Q 002040 755 STISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (976)
Q Consensus 755 ~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (976)
.++..|+.|++.|||||+++++|||+.++++|||||+|.+...|+||+||+||+|+.|.||+||+..+..++..|...+.
T Consensus 429 e~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 429 ETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCChHHHHHH
Q 002040 835 LSEQVVPDDLKALA 848 (976)
Q Consensus 835 ~~~~~vp~~l~~l~ 848 (976)
.++..||.++..+.
T Consensus 509 ~sG~evpe~~m~~~ 522 (593)
T KOG0344|consen 509 QSGCEVPEKIMGIK 522 (593)
T ss_pred HcCCcchHHHHhhh
Confidence 99999999876555
No 31
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-52 Score=439.56 Aligned_cols=363 Identities=33% Similarity=0.553 Sum_probs=341.9
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
--.|..+||...++.+|.+.||..|||+|...||.|+.+++++..+-||||||.+|++||+.++.... ..|.++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 45799999999999999999999999999999999999999999999999999999999999998752 45789999
Q ss_pred EccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
+.||++||.|....++.++...++++++++||....+++..+..+.+||++||++++.+.... ...|+.+.|||+||
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem---~l~l~sveyVVfdE 172 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM---TLTLSSVEYVVFDE 172 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe---eccccceeeeeehh
Confidence 999999999999999999999999999999999999999999989999999999997765432 25788999999999
Q ss_pred cccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHH
Q 002040 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (976)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~ 705 (976)
|++++.|||.+++..++..++..+|+++||||+|..+..+++..+.+|+.+.+...+-+...+...+..+...+|...|+
T Consensus 173 adrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl 252 (529)
T KOG0337|consen 173 ADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALL 252 (529)
T ss_pred hhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888888888888899999999999
Q ss_pred HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE
Q 002040 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (976)
Q Consensus 706 ~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~ 785 (976)
.++.......+++|||.+...++.+...|...|+.+..++|.|++.-|...+..|..++..+||.|+++++|+|||.+..
T Consensus 253 ~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldn 332 (529)
T KOG0337|consen 253 SILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDN 332 (529)
T ss_pred HHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccc
Confidence 99998877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhh
Q 002040 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (976)
Q Consensus 786 VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (976)
|||||+|.....|+||+||+.|+|..|.+|.|+.+.+..++-+|.-++..
T Consensus 333 vinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 333 VINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999999999999999999999999999999999999998888877644
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-51 Score=423.23 Aligned_cols=374 Identities=30% Similarity=0.521 Sum_probs=322.9
Q ss_pred CCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 002040 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (976)
Q Consensus 462 ~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~ 539 (976)
+.-.+++|.+++|.+.+++.|..++|.+|+.||..|+|.++.. +++|.++..|+|||.+|.|.||..+.-. .-
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~ 159 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VV 159 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----cc
Confidence 3456789999999999999999999999999999999999976 7999999999999999999999886532 23
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCce
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~ 619 (976)
.|+++.|+||++||.|+.+.+.+.++..++.+...+.|..... .-.-..+|+|+|||.+.+++..- +...+..+.
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r---G~~i~eqIviGTPGtv~Dlm~kl--k~id~~kik 234 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR---GNKLTEQIVIGTPGTVLDLMLKL--KCIDLEKIK 234 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc---CCcchhheeeCCCccHHHHHHHH--HhhChhhce
Confidence 6889999999999999999999999888888888777761110 00112589999999999998652 346788899
Q ss_pred EEEecCccccccc-CCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecC-c
Q 002040 620 YLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-E 697 (976)
Q Consensus 620 ~vVlDEah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~-~ 697 (976)
++|+|||+.|++. ||..+-..|...++++.|+|+||||+...+..++..++.++..+.+........+|.|.+..+. .
T Consensus 235 vfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~ 314 (477)
T KOG0332|consen 235 VFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR 314 (477)
T ss_pred EEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch
Confidence 9999999988875 6999999999999999999999999999999999999999999999888888889999886665 5
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccccc
Q 002040 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (976)
Q Consensus 698 ~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~G 777 (976)
.+|+..|.. |.....-|+.||||.++..+..|+..|...|+.+.++||.|...+|..++..|+.|..+|||+|++++||
T Consensus 315 ~~K~~~l~~-lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARG 393 (477)
T KOG0332|consen 315 DDKYQALVN-LYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARG 393 (477)
T ss_pred hhHHHHHHH-HHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcc
Confidence 678888888 4444566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCC------CHHHHHHHhcccCCCCCccEEEEEecCC-CcCchHHHHHHHhhcc-CCCChHHHH
Q 002040 778 LDVKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSE-QVVPDDLKA 846 (976)
Q Consensus 778 lDi~~v~~VI~~d~p~------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~i~~~l~~~~-~~vp~~l~~ 846 (976)
||++.|++|||||+|. +++.|+||+||+||.|++|.++.|+... ....+..|.+.+.... ...|+++..
T Consensus 394 iDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~i~~~~~~d~~E 470 (477)
T KOG0332|consen 394 IDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMKIKRLDPDDLDE 470 (477)
T ss_pred cccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhcceecCCccHHH
Confidence 9999999999999996 5899999999999999999999999754 4455557777664432 344554443
No 33
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-50 Score=426.43 Aligned_cols=367 Identities=34% Similarity=0.579 Sum_probs=337.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
+.+|++++|+..|+..+..+||.+|+.+|+.||+.+..|.|+++.+++|+|||.+|+++++.++.-. ....+|||
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999999999999887421 23567999
Q ss_pred EccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
++||++||.|+......+...+++.+..++||.....+...++. +.+|+|+|||++.+++... ......+.++|+|
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~---~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG---SLSTDGIKMFVLD 176 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc---cccccceeEEeec
Confidence 99999999999999999999999999999999988866655554 5899999999999998654 2456779999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHH
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (976)
||+.|+..||..++..|+..++++.|++++|||+|.++..+...|+.+|+.+.+.........+.|.+.......|+..|
T Consensus 177 EaDEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l 256 (397)
T KOG0327|consen 177 EADEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTL 256 (397)
T ss_pred chHhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHH
Confidence 99999999999999999999999999999999999999999999999999999998888888899999888777899888
Q ss_pred HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCc
Q 002040 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~ 784 (976)
..+.. .-.+.+||||+...+..|...|..+++.+.++||.|.+.+|..++..|+.|..+|||.|+.+++|+||..+.
T Consensus 257 ~dl~~---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~s 333 (397)
T KOG0327|consen 257 CDLYR---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVS 333 (397)
T ss_pred HHHHH---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcc
Confidence 88877 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChH
Q 002040 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (976)
Q Consensus 785 ~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (976)
.||||+.|.+..+|+||+||+||.|.+|.++.|++..+...+.++.+++.......|..
T Consensus 334 lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 334 LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 99999999999999999999999999999999999999999999998887666666653
No 34
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=3.4e-50 Score=440.77 Aligned_cols=352 Identities=30% Similarity=0.514 Sum_probs=316.2
Q ss_pred CCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 002040 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (976)
Q Consensus 462 ~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~ 541 (976)
.|.-...|.++.|...++..|...+|..||++|..|||.++++.|+||++..|+|||++|.+.++..+.- ....+
T Consensus 20 ~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~-----~~~~~ 94 (980)
T KOG4284|consen 20 QSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDS-----RSSHI 94 (980)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCc-----ccCcc
Confidence 3556678999999999999999999999999999999999999999999999999999999888876653 34578
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
++|||+|||++|.|+...+..++..+ |++|.+++||+........|+. +.|+|+|||+|..++... ..+.+++.+
T Consensus 95 q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~---~~n~s~vrl 170 (980)
T KOG4284|consen 95 QKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELG---AMNMSHVRL 170 (980)
T ss_pred eeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhc---CCCccceeE
Confidence 89999999999999999999999754 8999999999999988888775 899999999999998764 478899999
Q ss_pred EEecCccccccc-CCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcch
Q 002040 621 LVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD 699 (976)
Q Consensus 621 vVlDEah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~ 699 (976)
+||||||.+++. .|..+|..|+..++..+|++.||||-|..+..++.+||.+|..+...........|.|++.......
T Consensus 171 fVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~n 250 (980)
T KOG4284|consen 171 FVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPN 250 (980)
T ss_pred EEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCc
Confidence 999999999884 5999999999999999999999999999999999999999999998888888888999887655432
Q ss_pred --------HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEec
Q 002040 700 --------RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (976)
Q Consensus 700 --------k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 771 (976)
|+..|..++.. .+-.++||||+.+..|+-++.+|...|+.|.+|.|.|+|.+|..++..+++-.++|||+|
T Consensus 251 nsveemrlklq~L~~vf~~-ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsT 329 (980)
T KOG4284|consen 251 NSVEEMRLKLQKLTHVFKS-IPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVST 329 (980)
T ss_pred chHHHHHHHHHHHHHHHhh-CchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEec
Confidence 33444444433 234589999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 002040 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (976)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~ 823 (976)
+..+||||-+.+++|||.|+|.+..+|.||||||||.|..|.+++|+....+
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred chhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999999999999999999999999999999999999999999976543
No 35
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-49 Score=421.52 Aligned_cols=361 Identities=28% Similarity=0.477 Sum_probs=297.5
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHh---------cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 475 TSKIMETIRKLNYEKPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 475 ~~~l~~~l~~~~~~~p~~~Q~~~i~~il---------~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
...+.+.|.++++...+|+|..++|+++ ..+|+.|.||||||||++|.+||++.+...+. +..++||
T Consensus 145 ea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavV 220 (620)
T KOG0350|consen 145 EATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVV 220 (620)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEE
Confidence 3455677899999999999999999996 25799999999999999999999999887532 3468999
Q ss_pred EccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcC-----CeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-----TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
|+||++|+.|++..|..++...|+.|+.+.|..+......+|... .+|+|+|||+|+++|.+. +-++|.++.|
T Consensus 221 ivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~--k~f~Lk~Lrf 298 (620)
T KOG0350|consen 221 IVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT--KSFDLKHLRF 298 (620)
T ss_pred EeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC--CCcchhhceE
Confidence 999999999999999999999999999999988887777776652 389999999999999753 4478999999
Q ss_pred EEecCcccccccCCchHHHHHHHhc----------------------------------CCCCcEEEEeccCcHHHHHHH
Q 002040 621 LVMDEADRMFDMGFEPQITRIVQNI----------------------------------RPDRQTVLFSATFPRQVEILA 666 (976)
Q Consensus 621 vVlDEah~~~~~~f~~~i~~il~~~----------------------------------~~~~q~i~~SAT~~~~~~~l~ 666 (976)
+||||||||++..|..-+-.++..+ .+..+.++||||++.....+.
T Consensus 299 LVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~ 378 (620)
T KOG0350|consen 299 LVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLK 378 (620)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHh
Confidence 9999999998765433322222111 122347889999887777788
Q ss_pred HHHcCCCeEEEeC----CcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHH----HCC
Q 002040 667 RKVLNKPVEIQVG----GRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLL----KHG 738 (976)
Q Consensus 667 ~~~l~~~~~i~~~----~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~----~~~ 738 (976)
..-++.|..+.+. +....+..+.+...+....-+...+..+|..+ .-.++|||+++...+..|+..|. ..+
T Consensus 379 ~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~-k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~ 457 (620)
T KOG0350|consen 379 DLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN-KLNRTLCFVNSVSSANRLAHVLKVEFCSDN 457 (620)
T ss_pred hhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh-hcceEEEEecchHHHHHHHHHHHHHhcccc
Confidence 8788888544443 34445556666666666666777777777654 45699999999999999999887 235
Q ss_pred CCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEe
Q 002040 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (976)
Q Consensus 739 ~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~ 818 (976)
+.+-.+.|+++...|...+..|..|.+.|||||++++||+||.++++|||||+|.+...|+||+||++|+|+.|+||+++
T Consensus 458 ~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll 537 (620)
T KOG0350|consen 458 FKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLL 537 (620)
T ss_pred chhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEee
Confidence 67777999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCchHHHHHHHhh----ccCCCCh
Q 002040 819 SEEDAKYSPDLVKALEL----SEQVVPD 842 (976)
Q Consensus 819 ~~~d~~~~~~i~~~l~~----~~~~vp~ 842 (976)
+..+...+..+++.... ..+++|.
T Consensus 538 ~~~~~r~F~klL~~~~~~d~~~i~~~e~ 565 (620)
T KOG0350|consen 538 DKHEKRLFSKLLKKTNLWDGVEIQPIEY 565 (620)
T ss_pred ccccchHHHHHHHHhcccCCcceeecCc
Confidence 99999988888887654 3455554
No 36
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.8e-47 Score=461.80 Aligned_cols=347 Identities=20% Similarity=0.261 Sum_probs=274.4
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHH
Q 002040 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (976)
Q Consensus 473 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~L 552 (976)
.|++.+.+.|...||..|+++|.++|+.++.|+|+|+++|||||||++|++|++..+... .++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 478999999999999999999999999999999999999999999999999999998753 25789999999999
Q ss_pred HHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhc-CCcccccCCceEEEecCcccccc
Q 002040 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS-GGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 553 a~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~-~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
|.|++..+..+. ..++.+..+.|+.+. .+...+..+++|||+||++|...+... ......|+++.+|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 457888777777664 444566677999999999986533221 11112478899999999999876
Q ss_pred cCCchHHHHHHHh-------cCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc-------
Q 002040 632 MGFEPQITRIVQN-------IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------- 697 (976)
Q Consensus 632 ~~f~~~i~~il~~-------~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~------- 697 (976)
.|..++..++.. ....+|+|+||||+++... ++..++..++.+ +.....+.... +.+.+.+.
T Consensus 172 -~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~-~~~~~~p~~~~~~~~ 247 (742)
T TIGR03817 172 -VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGAR-TVALWEPPLTELTGE 247 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCce-EEEEecCCccccccc
Confidence 377665555443 3567899999999998865 567777777544 32222222222 22211111
Q ss_pred ----------chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC--------CCCceeccCCCCHHHHHHHHHH
Q 002040 698 ----------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--------GYPCLSLHGAKDQTDRESTISD 759 (976)
Q Consensus 698 ----------~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~~~~ 759 (976)
..+...+..++. ...++||||+|+..++.++..|... +..+..+||++++.+|..+++.
T Consensus 248 ~~~~~r~~~~~~~~~~l~~l~~---~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~ 324 (742)
T TIGR03817 248 NGAPVRRSASAEAADLLADLVA---EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERA 324 (742)
T ss_pred cccccccchHHHHHHHHHHHHH---CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHH
Confidence 123333333333 3579999999999999999988763 5688999999999999999999
Q ss_pred hccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecC--CCcCchHHHHHHHh
Q 002040 760 FKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE--EDAKYSPDLVKALE 834 (976)
Q Consensus 760 F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~--~d~~~~~~i~~~l~ 834 (976)
|++|.++|||||+++++||||+++++||+|++|.+...|+||+|||||.|+.|.+++|++. .|..++..+.+.+.
T Consensus 325 f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~ 401 (742)
T TIGR03817 325 LRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFD 401 (742)
T ss_pred HHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999863 35555555555554
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.8e-46 Score=449.61 Aligned_cols=345 Identities=20% Similarity=0.310 Sum_probs=268.5
Q ss_pred cccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 468 TWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 468 ~~~~--~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
.|.. ++....+...++. +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. ++.+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 4664 4455666666654 89999999999999999999999999999999999999999843 35799
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHh------cCCeEEEeCchhHHH--HHHhcCCcccccC
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK------RGTEIVVCTPGRMID--ILCTSGGKITNLR 616 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~------~~~~Iiv~Tp~~L~~--~l~~~~~~~~~l~ 616 (976)
||+|+++|+.++...+.. .++.+..+.++....++...+. ..++|||+||++|.. .+......+....
T Consensus 505 VISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 999999999855444433 5899999999988776654433 357999999999852 2221111112234
Q ss_pred CceEEEecCcccccccC--CchHHHHH--HHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEE
Q 002040 617 RVTYLVMDEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV 692 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~--f~~~i~~i--l~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~ 692 (976)
.+.+|||||||++++|| |.+.+..+ +....+..++++||||+++.+...+...+.....+.+ ..++...++...
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vf-r~Sf~RpNL~y~- 658 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVF-RQSFNRPNLWYS- 658 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEe-ecccCccceEEE-
Confidence 58899999999999998 77776653 5555577899999999999887766555543221111 122333344322
Q ss_pred EecCcch-HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEec
Q 002040 693 EVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (976)
Q Consensus 693 ~~~~~~~-k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 771 (976)
+..... .+..+..+|.........||||.++..|+.|+..|...|+.+..+||+|++.+|..+++.|..|.++|||||
T Consensus 659 -Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVAT 737 (1195)
T PLN03137 659 -VVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICAT 737 (1195)
T ss_pred -EeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 222222 234566666554445688999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHH
Q 002040 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (976)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 830 (976)
+++++|||+|+|++||||++|.+++.|+|++|||||.|..|.|++||+..|...+..++
T Consensus 738 dAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 738 VAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred chhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999887765555554
No 38
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.7e-45 Score=448.52 Aligned_cols=367 Identities=19% Similarity=0.205 Sum_probs=282.5
Q ss_pred HHHHHHH-HHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 476 SKIMETI-RKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 476 ~~l~~~l-~~~~~~~p~~~Q~~~i~~il~g------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
..+...+ ..++|. |||+|.+||+.|+.+ +|+|++|+||||||++|++|++..+.. +++++||||
T Consensus 438 ~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLvP 508 (926)
T TIGR00580 438 LEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLVP 508 (926)
T ss_pred HHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEeC
Confidence 3444444 457884 999999999999975 799999999999999999999988753 578999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH---HHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 549 tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
|++||.|++..|.+++..+++.+..++|+.+..+. +..+.. .++|||+||..| . ....+.++++||||
T Consensus 509 T~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll----~----~~v~f~~L~llVID 580 (926)
T TIGR00580 509 TTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL----Q----KDVKFKDLGLLIID 580 (926)
T ss_pred cHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh----h----CCCCcccCCEEEee
Confidence 99999999999999998889999999888765443 344544 489999999432 2 12467889999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHH
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (976)
|+|++ .......+..+.++.|+|+||||+++....++...+.++..+..... ....+.+.+.......-...
T Consensus 581 Eahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~--~R~~V~t~v~~~~~~~i~~~- 652 (926)
T TIGR00580 581 EEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPE--DRLPVRTFVMEYDPELVREA- 652 (926)
T ss_pred ccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCC--CccceEEEEEecCHHHHHHH-
Confidence 99984 44556677778888999999999888766565555556655543221 12234333322221111112
Q ss_pred HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC
Q 002040 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~ 782 (976)
++.....+++++|||+++..++.++..|... ++.+..+||+|++.+|..++..|.+|+++|||||+++++|||||+
T Consensus 653 --i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~ 730 (926)
T TIGR00580 653 --IRRELLRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPN 730 (926)
T ss_pred --HHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccccccc
Confidence 2233345789999999999999999999885 789999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhhhh
Q 002040 783 LELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQ 861 (976)
Q Consensus 783 v~~VI~~d~p~-s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~~~~~~ 861 (976)
+++||++++|. ....|+|++||+||.|..|+||+|++...... ..-.+. |.. + ..
T Consensus 731 v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~~~l~-~~~~~R-----------L~~--------~----~~ 786 (926)
T TIGR00580 731 ANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQKALT-EDAQKR-----------LEA--------I----QE 786 (926)
T ss_pred CCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCcccCC-HHHHHH-----------HHH--------H----HH
Confidence 99999999976 57799999999999999999999987643210 111111 111 1 11
Q ss_pred ccCCCCCCCCcccchhHHHHHHHHHHHHHHHcCCC
Q 002040 862 AHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFE 896 (976)
Q Consensus 862 ~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~g~~ 896 (976)
..-.|+||.+++.++++||+|..+|..|+|+-
T Consensus 787 ---~~~~g~gf~ia~~Dl~~Rg~G~~lG~~QsG~~ 818 (926)
T TIGR00580 787 ---FSELGAGFKIALHDLEIRGAGNLLGEEQSGHI 818 (926)
T ss_pred ---hhcchhhHHHHHHHHHhcCCcCCCCCcccCch
Confidence 11237899999999999999999999999964
No 39
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=3.7e-45 Score=456.57 Aligned_cols=365 Identities=18% Similarity=0.183 Sum_probs=286.3
Q ss_pred HHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH
Q 002040 478 IMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (976)
Q Consensus 478 l~~~l~~~~~~~p~~~Q~~~i~~il~g------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~ 551 (976)
.......++| .||++|.+||+.++.+ .|+|++|+||+|||.+|+.+++..+. .+++|||||||++
T Consensus 590 ~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT~e 660 (1147)
T PRK10689 590 YQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPTTL 660 (1147)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCcHH
Confidence 3455677898 6999999999999987 89999999999999999988876653 3678999999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHH---h-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL---K-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 552 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
||.|++..|..++..+++.+.+++|+.+..++...+ . ..++|||+||+.|. . ...+.++++|||||+|
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~----~----~v~~~~L~lLVIDEah 732 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ----S----DVKWKDLGLLIVDEEH 732 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh----C----CCCHhhCCEEEEechh
Confidence 999999999998887889999999988877765443 3 35899999997431 1 1456789999999999
Q ss_pred cccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHH
Q 002040 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707 (976)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~ 707 (976)
++ |+ ....++..++++.|+|+||||+++.+..++...+.++..+...... ...+.+.+....... ....+
T Consensus 733 rf---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~~~~~~~~~~~---~k~~i 802 (1147)
T PRK10689 733 RF---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSLV---VREAI 802 (1147)
T ss_pred hc---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCceEEEEecCcHH---HHHHH
Confidence 96 33 3356677788899999999999888877888888888766543221 223444333222211 12233
Q ss_pred HHhhhcCCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE
Q 002040 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (976)
Q Consensus 708 l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~ 785 (976)
+..+..+++++|||+++..++.++..|... ++.+..+||+|++.+|..++..|.+|+++|||||+++++|||||++++
T Consensus 803 l~el~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~ 882 (1147)
T PRK10689 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 (1147)
T ss_pred HHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCE
Confidence 444445789999999999999999999887 789999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhhhhccC
Q 002040 786 VINFDAP-NHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHG 864 (976)
Q Consensus 786 VI~~d~p-~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~~~~~~~~~ 864 (976)
||+.+++ .+...|+|++||+||.|..|+||+++....... ..+..-+..+ ..
T Consensus 883 VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~~~~~~--------------------~~~~~rl~~~----~~--- 935 (1147)
T PRK10689 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT--------------------TDAQKRLEAI----AS--- 935 (1147)
T ss_pred EEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCCCcccC--------------------HHHHHHHHHH----HH---
Confidence 9976664 356789999999999999999998875432111 1111111111 11
Q ss_pred CCCCCCCcccchhHHHHHHHHHHHHHHHcCCC
Q 002040 865 TGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFE 896 (976)
Q Consensus 865 ~~~~g~g~~~~~~~~~~~~~~~~~~~~~~g~~ 896 (976)
..-.|+||.+++.|+++||+|..+|..|+|+-
T Consensus 936 ~~~lg~gf~~a~~dl~~rg~g~~~g~~q~g~~ 967 (1147)
T PRK10689 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGQM 967 (1147)
T ss_pred hcCCcchHHHHHHHHHhcCCccCCCCccCCCc
Confidence 12238899999999999999999999999964
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-44 Score=423.09 Aligned_cols=328 Identities=20% Similarity=0.334 Sum_probs=259.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ++.+|||+||++|+.|++..+..
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~- 73 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKA- 73 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHH-
Confidence 589999999999999999999999999999999999999998842 45689999999999998887765
Q ss_pred HhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC--CchH
Q 002040 564 AKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQ 637 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~--f~~~ 637 (976)
+|+.+..+.++....+.. ..+.. ..+|+|+||+.|........ .+..+..+.+|||||||++++|| |.+.
T Consensus 74 ---~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~-~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 74 ---SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQ-TLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred ---cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHH-HHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 578888887777655332 22333 47999999998753220000 01145779999999999999987 6666
Q ss_pred HHHH--HHhcCCCCcEEEEeccCcHHHHHHHHHHc--CCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc
Q 002040 638 ITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (976)
Q Consensus 638 i~~i--l~~~~~~~q~i~~SAT~~~~~~~l~~~~l--~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~ 713 (976)
+..+ +....++.++++||||+++.+.......+ ..|..+.. .....++...+.. .....+..++.+|.....
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~---s~~r~nl~~~v~~-~~~~~~~~l~~~l~~~~~ 225 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT---SFDRPNLYYEVRR-KTPKILEDLLRFIRKEFK 225 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC---CCCCCCcEEEEEe-CCccHHHHHHHHHHHhcC
Confidence 6544 33344778999999999998766555554 34443322 1222333322222 222455566777765445
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (976)
...+||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|+|++||+|++|.
T Consensus 226 ~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~ 305 (470)
T TIGR00614 226 GKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPK 305 (470)
T ss_pred CCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCC
Confidence 55679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHH
Q 002040 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (976)
Q Consensus 794 s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 831 (976)
++..|+|++||+||.|..|.|++|+++.+...+..++.
T Consensus 306 s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~~ 343 (470)
T TIGR00614 306 SMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLLM 343 (470)
T ss_pred CHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHHh
Confidence 99999999999999999999999999988766666554
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=6.3e-43 Score=419.48 Aligned_cols=328 Identities=20% Similarity=0.338 Sum_probs=257.0
Q ss_pred HHHHH-HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHH
Q 002040 479 METIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (976)
Q Consensus 479 ~~~l~-~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 557 (976)
...|+ .+||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.. +..+|||+|+++|+.|+.
T Consensus 14 ~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 14 KQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHHHHH
Confidence 34444 389999999999999999999999999999999999999999843 346899999999999998
Q ss_pred HHHHHHHhhcCcEEEEeeCCCChHHHHHH---Hh-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC
Q 002040 558 SDIRKFAKVMGVRCVPVYGGSGVAQQISE---LK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (976)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~ 633 (976)
..+.. .|+.+.++.++......... +. ...+|+|+||++|....... .....++++|||||||++++||
T Consensus 83 ~~l~~----~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~---~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 83 DQLLA----NGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLE---HLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHH----cCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHH---HHhhCCCCEEEEeCcccccccc
Confidence 88775 47888888777766554322 22 24689999999986322111 1234468999999999999987
Q ss_pred --CchHHHHH--HHhcCCCCcEEEEeccCcHHHHHHHHHHc--CCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHH
Q 002040 634 --FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707 (976)
Q Consensus 634 --f~~~i~~i--l~~~~~~~q~i~~SAT~~~~~~~l~~~~l--~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~ 707 (976)
|.+.+..+ +....+..++|+||||++..+...+...+ .+|..+ +.. ....++. +.+.........++..
T Consensus 156 ~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~--~~r~nl~--~~v~~~~~~~~~l~~~ 230 (607)
T PRK11057 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YTLVEKFKPLDQLMRY 230 (607)
T ss_pred CcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECC--CCCCcce--eeeeeccchHHHHHHH
Confidence 66665544 33334678999999999988765444433 344432 221 2222332 2222223344555555
Q ss_pred HHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEE
Q 002040 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787 (976)
Q Consensus 708 l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI 787 (976)
+.. ....++||||+++..|+.++..|...|+.+..+||+|++.+|..+++.|..|.++|||||+++++|||+|+|++||
T Consensus 231 l~~-~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI 309 (607)
T PRK11057 231 VQE-QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVV 309 (607)
T ss_pred HHh-cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEE
Confidence 543 3457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHH
Q 002040 788 NFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (976)
Q Consensus 788 ~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 830 (976)
+|++|.+...|+|++|||||.|.+|.|++||++.|...+..++
T Consensus 310 ~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 310 HFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred EeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999988765544443
No 42
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-44 Score=398.85 Aligned_cols=497 Identities=20% Similarity=0.254 Sum_probs=369.2
Q ss_pred CCCCccCCCCCcCccCccCCCCCCCCCCCCCCCCCCccccccccccCCCCCCChhhhcCCCCCCCCChhHHHHhcccchh
Q 002040 248 GRNWTLDREDSDDEEVPQTGKSETDMDADEEPKPSENQVGDAMLVDSDGGSAAPALQIGAAEDEDIDPLDAFMNSMVLPE 327 (976)
Q Consensus 248 ~r~~~~~~e~~de~~~~~~~~~e~~~~~~e~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~e~d~~~~~~~~~~~~~ 327 (976)
+|.||+.+++.|+.++||+.-+.+ . ...+.+..++.|++.|+.+.+.+||++..-|+.+ .|... ...+
T Consensus 169 dR~WYdnde~~d~~~npf~~~~~E-~--------~l~~~~~ki~~dn~~we~nrl~~sgvv~~~e~~~--~f~~~-e~~~ 236 (1042)
T KOG0924|consen 169 DREWYDNDEGGDEVHNPFSELSRE-A--------ELLEKIQKINNDNALWETNRLLTSGVVQRMEVIS--DFLSD-EARE 236 (1042)
T ss_pred chhhhhcCCccccccCchhcchhH-H--------HHHHHHHhhcchhhhhhhhcccchhhhhcccccC--ccchh-hHHH
Confidence 599999999999999999864411 1 1222334489999999999999999999888876 56554 3333
Q ss_pred HHhhhccCCCCCCCCCccccccccccCCCCCCCCCCCcccccccCCCCCCCCCCcccCCcccCCCCCCCcchHHHHHHHH
Q 002040 328 VEKLKNTVEPSFTDGNNVESKKMDRKGDRRSNGEQPKKSSNKSLGRIIPGEDSDSDYGDLENDEKPLEDEDDDEFMKRVK 407 (976)
Q Consensus 328 ~~~~~~~~~~~~~d~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 407 (976)
+|||+++|+|+||..+++|+..+ +++..|.++|++..++.++.+ +...+
T Consensus 237 --llv~~i~~~fld~r~~~~k~~~~---------------------v~pv~d~~sd~a~~a~~gs~l--------v~~~r 285 (1042)
T KOG0924|consen 237 --LLVHNIVPPFLDGREVFTKQAEP---------------------VIPVRDPTSDLAISARRGSKL--------VRERR 285 (1042)
T ss_pred --hhhhcccCCccccceeeeccccc---------------------ccccCCCchhhhhhhhccccH--------HHHHH
Confidence 99999999999999999999766 899999999999998888865 66677
Q ss_pred HHhhccCCcCCCcccccCcccccccccchhhhcCCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHcCC
Q 002040 408 KTKAEKLSIVDHSKIDYQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNY 487 (976)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~ 487 (976)
.+...+.+..+||.+.++.++..+.++.+.- .....+|+.......+.+.. .....|. ....+. ....+
T Consensus 286 ~~~~~~k~~~~~~~~~~~~lgn~~glek~~~----ed~~~~~~~~~~~a~h~k~~-~a~~~fa---~~k~i~---eqrq~ 354 (1042)
T KOG0924|consen 286 EKEERKKAQKKHWKLAGTALGNVMGLEKKND----EDGKVAYRGSVKFASHMKKS-EAVSEFA---SKKSIR---EQRQY 354 (1042)
T ss_pred HhhhhhhhhhhhhhhcchhhccccccccCcc----cccccccccchhhhhccccc-ccccccc---ccchHH---HHHhh
Confidence 7778888889999999999988887765432 11111122111111111100 0111111 111122 22344
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
...+.++.+.+..|..++-+||+|+||||||++....++..= .+++..+.+..|.|..|+.+ .+.++..+
T Consensus 355 LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edG-------Y~~~GmIGcTQPRRvAAiSV---AkrVa~EM 424 (1042)
T KOG0924|consen 355 LPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDG-------YADNGMIGCTQPRRVAAISV---AKRVAEEM 424 (1042)
T ss_pred cchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcc-------cccCCeeeecCchHHHHHHH---HHHHHHHh
Confidence 455678889999999999999999999999998655554331 12334566677999998855 55566678
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~ 646 (976)
++.+.+-+|.+..++.... ..+.|-++|.|.|+...... ..|..+++||||||| +.++.+....+...+..-+
T Consensus 425 ~~~lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d----~~L~kYSviImDEAHERslNtDilfGllk~~larR 498 (1042)
T KOG0924|consen 425 GVTLGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKD----RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARR 498 (1042)
T ss_pred CCccccccceEEEeeecCC--CceeEEEeccchHHHHHhhh----hhhhheeEEEechhhhcccchHHHHHHHHHHHHhh
Confidence 8888888888777766433 55789999999998766543 478899999999999 8888888888888888888
Q ss_pred CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh---cCCcEEEEecC
Q 002040 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHS 723 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~---~~~kvLIF~~s 723 (976)
.+.++|++||||... .+ ..|+++...+++.+++++.. ..+...+-.+.+.+.+......+ ..|.+|||++.
T Consensus 499 rdlKliVtSATm~a~--kf-~nfFgn~p~f~IpGRTyPV~---~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 499 RDLKLIVTSATMDAQ--KF-SNFFGNCPQFTIPGRTYPVE---IMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred ccceEEEeeccccHH--HH-HHHhCCCceeeecCCccceE---EEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 899999999999543 34 45556555567777776643 23333444555555444333322 35789999999
Q ss_pred HHHHHHHHHHHHHC----------CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC--
Q 002040 724 QEKCDALFRDLLKH----------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-- 791 (976)
Q Consensus 724 ~~~~~~l~~~L~~~----------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~-- 791 (976)
+..++..+..+... ++.++.|++.|++..+.++++....|..+|||||++|++.|.||++.+||+.++
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 98877766666542 678999999999999999999999999999999999999999999999997433
Q ss_pred ----------------CCCHHHHHHHhcccCCCCCccEEEEEecCC
Q 002040 792 ----------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (976)
Q Consensus 792 ----------------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~ 821 (976)
|.|.++..||.|||||+| +|+||.+||..
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 678888999999999998 99999999874
No 43
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=8.5e-43 Score=422.51 Aligned_cols=360 Identities=18% Similarity=0.266 Sum_probs=271.0
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHH
Q 002040 479 METIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (976)
Q Consensus 479 ~~~l~~~~~~~p~~~Q~~~i~~il~g------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~L 552 (976)
...+..++| .||++|.++|+.|..+ .++|++|+||||||++|++|++..+. +|+++|||+||++|
T Consensus 252 ~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT~~L 322 (681)
T PRK10917 252 KKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPTEIL 322 (681)
T ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEeccHHH
Confidence 334556888 5999999999999976 47999999999999999999998764 36789999999999
Q ss_pred HHHHHHHHHHHHhhcCcEEEEeeCCCChHH---HHHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccc
Q 002040 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (976)
Q Consensus 553 a~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~ 628 (976)
|.|++..+.+++..+|+.+.+++|+.+..+ .+..+..| ++||||||+.|.+. ..+.++++|||||+|+
T Consensus 323 A~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 323 AEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD--------VEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc--------chhcccceEEEechhh
Confidence 999999999999999999999999998544 34455554 89999999877432 3577899999999998
Q ss_pred ccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHH
Q 002040 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELL 708 (976)
Q Consensus 629 ~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l 708 (976)
+. ......+.......++|+||||+.+....+. .+.......+...+.....+.+.+... .....++..+
T Consensus 395 fg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~---~~~~~~~~~i 464 (681)
T PRK10917 395 FG-----VEQRLALREKGENPHVLVMTATPIPRTLAMT--AYGDLDVSVIDELPPGRKPITTVVIPD---SRRDEVYERI 464 (681)
T ss_pred hh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHH--HcCCCceEEEecCCCCCCCcEEEEeCc---ccHHHHHHHH
Confidence 53 2334444455556899999999877654333 233322222222222223344333322 2223344444
Q ss_pred Hhhh-cCCcEEEEecCH--------HHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccccc
Q 002040 709 GEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (976)
Q Consensus 709 ~~~~-~~~kvLIF~~s~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~G 777 (976)
.... ...+++|||+.+ ..+..++..|... ++.+..+||+|++.+|..+++.|.+|.++|||||+++++|
T Consensus 465 ~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 544 (681)
T PRK10917 465 REEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVG 544 (681)
T ss_pred HHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeC
Confidence 4333 456999999964 3456677777765 5789999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCC-HHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHHHHHh
Q 002040 778 LDVKELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVN 856 (976)
Q Consensus 778 lDi~~v~~VI~~d~p~s-~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~ 856 (976)
||||++++||+|++|.. .+.|.|++||+||.|..|+|+++++.........-++. |.
T Consensus 545 iDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~--------------~~-------- 602 (681)
T PRK10917 545 VDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKI--------------MR-------- 602 (681)
T ss_pred cccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHH--------------HH--------
Confidence 99999999999999974 67888999999999999999999963211111111111 11
Q ss_pred hhhhhccCCCCCCCCcccchhHHHHHHHHHHHHHHHcCCCC
Q 002040 857 QGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (976)
Q Consensus 857 ~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~g~~~ 897 (976)
+ ...||.+++.++.+|+.+..++..|+|+..
T Consensus 603 ~----------~~dgf~iae~dl~~rg~g~~~g~~q~g~~~ 633 (681)
T PRK10917 603 E----------TNDGFVIAEKDLELRGPGELLGTRQSGLPE 633 (681)
T ss_pred H----------hcchHHHHHHhHhhCCCccccCceecCCCC
Confidence 0 145789999999999999999999999654
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.5e-42 Score=414.70 Aligned_cols=363 Identities=21% Similarity=0.275 Sum_probs=267.5
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCH
Q 002040 477 KIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 477 ~l~~~l~~~~~~~p~~~Q~~~i~~il~g------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr 550 (976)
.+...+..++| .||++|..||+.|+.+ .++|++|+||||||++|++|++..+. +|++++||+||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHH
Confidence 34556778999 6999999999999876 36899999999999999999998765 367899999999
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEeeCCCChHH---HHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 551 ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ---QISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 551 ~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+||.|++..+.+++..+|+.+.+++|+..... .+..+.. .++|||+||+.|.+. ..+.++++|||||+
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~--------~~~~~l~lvVIDEa 366 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK--------VEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc--------ccccccceEEEech
Confidence 99999999999999989999999999987665 3344443 479999999876432 35778999999999
Q ss_pred ccccccCCchHHHHHHHhcC--CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHH
Q 002040 627 DRMFDMGFEPQITRIVQNIR--PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~--~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (976)
|++... +...+..... ..+++|+||||+.+....+. .+.......+...+.....+...+. .... ...+
T Consensus 367 H~fg~~----qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~--~~~~l~~~~i~~~p~~r~~i~~~~~--~~~~-~~~~ 437 (630)
T TIGR00643 367 HRFGVE----QRKKLREKGQGGFTPHVLVMSATPIPRTLALT--VYGDLDTSIIDELPPGRKPITTVLI--KHDE-KDIV 437 (630)
T ss_pred hhccHH----HHHHHHHhcccCCCCCEEEEeCCCCcHHHHHH--hcCCcceeeeccCCCCCCceEEEEe--Ccch-HHHH
Confidence 985321 2222222222 26789999999876543332 2222211111111111223333222 2222 2444
Q ss_pred HHHHHhhh-cCCcEEEEecCH--------HHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc
Q 002040 705 LELLGEWY-EKGKILIFVHSQ--------EKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (976)
Q Consensus 705 ~~~l~~~~-~~~kvLIF~~s~--------~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v 773 (976)
+..+.... ...+++|||+.. ..+..++..|... ++.|..+||+|++.+|..+++.|++|.++|||||++
T Consensus 438 ~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 438 YEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred HHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 55554433 456899999876 4566677777653 788999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeCCCC-CHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHH
Q 002040 774 AARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFM 852 (976)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~ 852 (976)
+++|||+|++++||+|++|. ..+.|.|++||+||.|.+|.|++++........... |.
T Consensus 518 ie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~~~~~~~~~~r--------------l~------- 576 (630)
T TIGR00643 518 IEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYKNPKSESAKKR--------------LR------- 576 (630)
T ss_pred eecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEECCCCCHHHHHH--------------HH-------
Confidence 99999999999999999997 577888999999999999999999843211110000 00
Q ss_pred HHHhhhhhhccCCCCCCCCcccchhHHHHHHHHHHHHHHHcCCCC
Q 002040 853 AKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (976)
Q Consensus 853 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~g~~~ 897 (976)
.+.. ...||.+++.++++|+.+..++.+|+|+..
T Consensus 577 -~~~~----------~~dgf~iae~dl~~Rg~g~~~g~~QsG~~~ 610 (630)
T TIGR00643 577 -VMAD----------TLDGFVIAEEDLELRGPGDLLGTKQSGYPE 610 (630)
T ss_pred -HHHh----------hcccHHHHHHHHhcCCCcccCCCcccCCCc
Confidence 1100 145788999999999999999999999654
No 45
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1e-41 Score=422.59 Aligned_cols=343 Identities=22% Similarity=0.316 Sum_probs=251.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCC-CCCCCCeEEEEccCHHH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV-AAGDGPVGLIMAPTREL 552 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~-~~~~~~~vLIl~Ptr~L 552 (976)
|++.+...+.. +|..|+|+|.++|+.+++|+|+|++||||||||++|++|++.++...... ....++.+|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 45556555554 78899999999999999999999999999999999999999988753211 11346789999999999
Q ss_pred HHHHHHHHHH-------HHh----hc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 553 VQQIHSDIRK-------FAK----VM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 553 a~Q~~~~~~~-------~~~----~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
|.|++..+.. ++. .+ ++.+.+++|+.+.......+...++|+||||++|..++... .....|.++.+
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~-~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSP-KFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcCh-hHHHHHhcCCE
Confidence 9999886653 221 22 67888899999888877777778999999999997766432 11235788999
Q ss_pred EEecCcccccccCCchHHHHHH----HhcCCCCcEEEEeccCcHHHHHHHHHHcCC-----C--eEEEeCCcccccCCce
Q 002040 621 LVMDEADRMFDMGFEPQITRIV----QNIRPDRQTVLFSATFPRQVEILARKVLNK-----P--VEIQVGGRSVVNKDIT 689 (976)
Q Consensus 621 vVlDEah~~~~~~f~~~i~~il----~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~-----~--~~i~~~~~~~~~~~i~ 689 (976)
|||||||.+++..+..++..++ ....+..|+|+||||+++. ..++..+... + +.+ +.........+.
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va~~L~~~~~~~~~r~~~i-v~~~~~k~~~i~ 253 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVAKFLVGYEDDGEPRDCEI-VDARFVKPFDIK 253 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHHHHhcCccccCCCCceEE-EccCCCccceEE
Confidence 9999999998776665544333 3334678999999999763 2333332221 1 111 111111111111
Q ss_pred EEEE-----ecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHC------CCCceeccCCCCHHHHHHHH
Q 002040 690 QLVE-----VRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQTDRESTI 757 (976)
Q Consensus 690 q~~~-----~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~~R~~~~ 757 (976)
.... ..........+...|.... ..+++||||+|+..|+.++..|... +..+..+||+|++.+|..++
T Consensus 254 v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve 333 (876)
T PRK13767 254 VISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVE 333 (876)
T ss_pred EeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHH
Confidence 0000 0111112223333333332 3578999999999999999999873 46899999999999999999
Q ss_pred HHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC-CCccEEEEEecC
Q 002040 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFISE 820 (976)
Q Consensus 758 ~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~-g~~g~~~~~~~~ 820 (976)
+.|++|.++|||||+++++|||||++++||+|++|.+...|+||+||+||. |..+.++++++.
T Consensus 334 ~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 334 EKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred HHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 999999999999999999999999999999999999999999999999986 444445555443
No 46
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-42 Score=421.84 Aligned_cols=335 Identities=24% Similarity=0.370 Sum_probs=258.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
.|.+++|++.+.+.+...||..|+|+|.+|++. +++|+|+|++||||||||++|.+|++.++.. +.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7799999999999999999999999998752 5689999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+||++||.|++..|..+.. +|+++..++|+...... ....++|+||||+++..++.... ..+..+++|||||+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~---~~l~~v~lvViDE~ 146 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGA---PWLDDITCVVVDEV 146 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcCh---hhhhhcCEEEEECc
Confidence 9999999999999998653 58999999998754432 22457999999999988776432 34678999999999
Q ss_pred ccccccCCchHHHHHHHhc---CCCCcEEEEeccCcHHHHHHHHHHcCC-------CeEEEeC--CcccccCCceEE-EE
Q 002040 627 DRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNK-------PVEIQVG--GRSVVNKDITQL-VE 693 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~---~~~~q~i~~SAT~~~~~~~l~~~~l~~-------~~~i~~~--~~~~~~~~i~q~-~~ 693 (976)
|.+.+.++++.+..++..+ .+..|+|+||||+++. ..++..+... |+.+..+ ..........+. +.
T Consensus 147 H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 147 HLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred cccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCC
Confidence 9999888888887776554 5788999999999864 2233322111 1111100 000000000000 00
Q ss_pred ecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC------------------------------------
Q 002040 694 VRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------------ 737 (976)
Q Consensus 694 ~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~------------------------------------ 737 (976)
.......+..+...+ ..++++||||+++..|..++..|...
T Consensus 226 ~~~~~~~~~~~~~~~---~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l 302 (737)
T PRK02362 226 VPSKDDTLNLVLDTL---EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCV 302 (737)
T ss_pred CccchHHHHHHHHHH---HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHH
Confidence 000111222222222 25689999999999999998887643
Q ss_pred CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eC-----CCCCHHHHHHHhcccCCC
Q 002040 738 GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-----APNHYEDYVHRVGRTGRA 808 (976)
Q Consensus 738 ~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d-----~p~s~~~y~Qr~GR~gR~ 808 (976)
...+..+||+|++.+|..++..|++|.++|||||+++++|||+|.+.+||+ |+ .|.+..+|+||+|||||.
T Consensus 303 ~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 303 AKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRP 382 (737)
T ss_pred HhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCC
Confidence 136788999999999999999999999999999999999999999999997 76 588999999999999999
Q ss_pred CCc--cEEEEEecCC
Q 002040 809 GRK--GCAITFISEE 821 (976)
Q Consensus 809 g~~--g~~~~~~~~~ 821 (976)
|.. |.|++++...
T Consensus 383 g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 383 GLDPYGEAVLLAKSY 397 (737)
T ss_pred CCCCCceEEEEecCc
Confidence 865 8999988654
No 47
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=5.5e-42 Score=412.88 Aligned_cols=326 Identities=22% Similarity=0.350 Sum_probs=259.7
Q ss_pred HHH-HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 481 TIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 481 ~l~-~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
.|+ .+||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|++..
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 344 399999999999999999999999999999999999999998842 33589999999999998887
Q ss_pred HHHHHhhcCcEEEEeeCCCChHHHHH---HHh-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC--
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVAQQIS---ELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-- 633 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-- 633 (976)
+.. +|+.+..+.++....+... .+. ...+|+++||++|....... ......+++|||||||++..||
T Consensus 73 l~~----~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~---~l~~~~l~~iViDEaH~i~~~g~~ 145 (591)
T TIGR01389 73 LRA----AGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLN---MLQRIPIALVAVDEAHCVSQWGHD 145 (591)
T ss_pred HHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHH---HHhcCCCCEEEEeCCcccccccCc
Confidence 776 4788888888876655432 222 35799999999986432221 1345679999999999999887
Q ss_pred CchHHHHHHHh--cCCCCcEEEEeccCcHHHHHHHHHHcC--CCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHH
Q 002040 634 FEPQITRIVQN--IRPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLG 709 (976)
Q Consensus 634 f~~~i~~il~~--~~~~~q~i~~SAT~~~~~~~l~~~~l~--~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~ 709 (976)
|.+.+..+... .-+..++|+||||+++.+...+...+. .+..+. . .....++. +.+.....+...+...|.
T Consensus 146 frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~--~~~r~nl~--~~v~~~~~~~~~l~~~l~ 220 (591)
T TIGR01389 146 FRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFI-T--SFDRPNLR--FSVVKKNNKQKFLLDYLK 220 (591)
T ss_pred cHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-c--CCCCCCcE--EEEEeCCCHHHHHHHHHH
Confidence 66666554332 224556999999999988766666554 333221 1 22223332 223334456667777776
Q ss_pred hhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEe
Q 002040 710 EWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF 789 (976)
Q Consensus 710 ~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~ 789 (976)
.. ...++||||+++..|+.++..|...|+.+..+||+|+..+|..+++.|.+|.++|||||+++++|||+|++++||+|
T Consensus 221 ~~-~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~ 299 (591)
T TIGR01389 221 KH-RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHY 299 (591)
T ss_pred hc-CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEc
Confidence 53 35789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHH
Q 002040 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (976)
Q Consensus 790 d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 830 (976)
++|.++..|+|++||+||.|..|.|++||++.+...+..++
T Consensus 300 ~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 300 DMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 99999999999999999999999999999987765555444
No 48
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=7.3e-42 Score=405.94 Aligned_cols=317 Identities=20% Similarity=0.277 Sum_probs=249.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE-EccCHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI-MAPTRELVQQIHSDIRK 562 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~-d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI-l~Ptr~La~Q~~~~~~~ 562 (976)
.||. |||||.++|+.++.|+ ++++++|||||||.+|+++++.. .. ....|+.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 5887 9999999999999998 57778999999999776555532 11 123566666 66999999999999999
Q ss_pred HHhhc-----------------------CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC---------
Q 002040 563 FAKVM-----------------------GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------- 610 (976)
Q Consensus 563 ~~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~--------- 610 (976)
+++.+ ++.+.+++||.+...++..+..+++|||+|+ +++.+...
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 98865 4889999999999999999999999999995 44433211
Q ss_pred ----cccccCCceEEEecCcccccccCCchHHHHHHHhc--CCC---CcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCc
Q 002040 611 ----KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPD---RQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (976)
Q Consensus 611 ----~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~--~~~---~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~ 681 (976)
....|.++.+||||||| ++++|...+..|+..+ ++. +|+++||||++..+..++..++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 00126789999999999 6799999999999975 332 699999999999888888888878876666544
Q ss_pred ccccCCceEEEEecCcchHHHHHHHHHHhh--hcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHH-----
Q 002040 682 SVVNKDITQLVEVRPESDRFLRLLELLGEW--YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRE----- 754 (976)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~--~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~----- 754 (976)
......+.+.+. .....++..++..|... ...+++||||||+..|..|+..|...++ ..|||.|++.+|.
T Consensus 239 ~l~a~ki~q~v~-v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~ 315 (844)
T TIGR02621 239 RLAAKKIVKLVP-PSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKK 315 (844)
T ss_pred cccccceEEEEe-cChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHH
Confidence 444445555433 23334444444333222 2357899999999999999999998876 8999999999999
Q ss_pred HHHHHhcc----CC-------ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCc-cEEEEEecC
Q 002040 755 STISDFKS----NV-------CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISE 820 (976)
Q Consensus 755 ~~~~~F~~----g~-------~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~-g~~~~~~~~ 820 (976)
.+++.|++ |. ..|||||+++++||||+. ++||++..| .+.|+||+||+||.|.. +..+++++.
T Consensus 316 ~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 316 EIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 88999987 54 689999999999999986 888888777 68999999999999985 344555543
No 49
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=8.3e-41 Score=410.24 Aligned_cols=338 Identities=20% Similarity=0.278 Sum_probs=260.9
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
+|.++++++.+.+.|...||..|+|+|.++++. +++|+++|+++|||||||++|.+|++.++.. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 577889999999999999999999999999986 7899999999999999999999999988764 25689999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+|+++||.|++..|..+. .+|+.+..++|+...... ....++|+|+||+++..++.... ..++++++|||||+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~---~~l~~l~lvViDE~ 147 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKLVVADEI 147 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCc---hhhhcCCEEEEcCc
Confidence 999999999999998864 478999999998765432 22458999999999987775432 34788999999999
Q ss_pred ccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccC-C-ceEEEEecCcc--hHH-
Q 002040 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-D-ITQLVEVRPES--DRF- 701 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~-~-i~q~~~~~~~~--~k~- 701 (976)
|.+.+.++...+..++..+....|+|+||||+++. ..++. |+...... ....+.+.. . +.+.+...... .++
T Consensus 148 H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~ 224 (720)
T PRK00254 148 HLIGSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVV-SDWRPVKLRKGVFYQGFLFWEDGKIERFP 224 (720)
T ss_pred CccCCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCcccc-CCCCCCcceeeEecCCeeeccCcchhcch
Confidence 99998899999999999998899999999999864 44444 44433211 111111110 0 11111111111 111
Q ss_pred HHHHHHHHhh-hcCCcEEEEecCHHHHHHHHHHHHHC---------------------------------CCCceeccCC
Q 002040 702 LRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCLSLHGA 747 (976)
Q Consensus 702 ~~l~~~l~~~-~~~~kvLIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~~lhg~ 747 (976)
..+...+... ..++++||||+++..|..++..|... ...+.++||+
T Consensus 225 ~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag 304 (720)
T PRK00254 225 NSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG 304 (720)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC
Confidence 1111222221 23679999999999998877666421 2358899999
Q ss_pred CCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE-------eCCCC-CHHHHHHHhcccCCCC--CccEEEEE
Q 002040 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------FDAPN-HYEDYVHRVGRTGRAG--RKGCAITF 817 (976)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~-------~d~p~-s~~~y~Qr~GR~gR~g--~~g~~~~~ 817 (976)
|++.+|..+...|++|.++|||||+++++|||+|.+.+||. ++.|. ....|+||+|||||.| ..|.|++|
T Consensus 305 l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~ 384 (720)
T PRK00254 305 LGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIV 384 (720)
T ss_pred CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEE
Confidence 99999999999999999999999999999999999999994 45444 4679999999999965 57999999
Q ss_pred ecCCC
Q 002040 818 ISEED 822 (976)
Q Consensus 818 ~~~~d 822 (976)
++..+
T Consensus 385 ~~~~~ 389 (720)
T PRK00254 385 ATTEE 389 (720)
T ss_pred ecCcc
Confidence 87644
No 50
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-42 Score=340.19 Aligned_cols=334 Identities=31% Similarity=0.523 Sum_probs=287.0
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
.+.|.++-|.+.++.++-..||..|+.+|.++||...-|.|+|.+|..|.|||.+|.+..++.+.-- .....+||
T Consensus 41 ssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv-----~g~vsvlv 115 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV-----DGQVSVLV 115 (387)
T ss_pred ccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----CCeEEEEE
Confidence 3568889999999999999999999999999999999999999999999999999999888776532 22456899
Q ss_pred EccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 546 MAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
+|.||+||.|+.+++.+|++++ ++++.++|||..+......++.-++|+|+|||+++.+.... ..+|+++..+|||
T Consensus 116 mchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k---~l~lk~vkhFvlD 192 (387)
T KOG0329|consen 116 MCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR---SLNLKNVKHFVLD 192 (387)
T ss_pred EeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc---cCchhhcceeehh
Confidence 9999999999999999999987 58899999999998888888887899999999999888764 3788999999999
Q ss_pred Cccccccc-CCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccc-ccCCceEEEEecCcchHHH
Q 002040 625 EADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV-VNKDITQLVEVRPESDRFL 702 (976)
Q Consensus 625 Eah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~-~~~~i~q~~~~~~~~~k~~ 702 (976)
||+.|+.+ +....+..|+...+...|+.+||||++..+.....+|+.+|..|.+..... ....+.|++.......|..
T Consensus 193 Ecdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNr 272 (387)
T KOG0329|consen 193 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNR 272 (387)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 99988653 457788899999999999999999999999999999999999988876543 4455677777777778887
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~ 782 (976)
.+..+|..+ .-++++||+.+...+. | ..+ ||||+++++|+||..
T Consensus 273 kl~dLLd~L-eFNQVvIFvKsv~Rl~-------------------------------f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 273 KLNDLLDVL-EFNQVVIFVKSVQRLS-------------------------------F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhhhh-hhcceeEeeehhhhhh-------------------------------h---hhh-hHHhhhhccccCccc
Confidence 877777653 4679999999876510 2 122 899999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecC-CCcCchHHHHHHHhhccCCCChH
Q 002040 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDD 843 (976)
Q Consensus 783 v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~vp~~ 843 (976)
++.|||||.|.+..+|+||+|||||.|.+|.+++|++. ++...+..+...+......+|+.
T Consensus 317 vNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLpde 378 (387)
T KOG0329|consen 317 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELPDE 378 (387)
T ss_pred ceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcCcc
Confidence 99999999999999999999999999999999999974 57777777777777776677764
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-38 Score=389.73 Aligned_cols=331 Identities=18% Similarity=0.266 Sum_probs=251.5
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
.|.+++|++.+.+.+...+|. |+|+|.++++.+.+++++|+++|||||||++|.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 467889999999999999987 999999999999999999999999999999999999988753 45789999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 548 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
|+++||.|+++.|.++. .+|+.+..++|+...... +...++|+|+||+++..++.... ..+.++++|||||||
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~---~~l~~v~lvViDEaH 145 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDP---YIINDVGLIVADEIH 145 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCCh---hHHhhcCEEEEecch
Confidence 99999999999999864 478889888887654322 22458999999999977775432 357889999999999
Q ss_pred cccccCCchHHHHHHH---hcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEE------EecCcc
Q 002040 628 RMFDMGFEPQITRIVQ---NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV------EVRPES 698 (976)
Q Consensus 628 ~~~~~~f~~~i~~il~---~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~------~~~~~~ 698 (976)
.+.+.++++.+..++. .+++..|+|+||||+++. ..++. |+..... .....+. .+...+ ......
T Consensus 146 ~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~-~~~~r~v---pl~~~i~~~~~~~~~~~~ 219 (674)
T PRK01172 146 IIGDEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLI-KSNFRPV---PLKLGILYRKRLILDGYE 219 (674)
T ss_pred hccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCcc-CCCCCCC---CeEEEEEecCeeeecccc
Confidence 9988888877776654 456788999999999764 33444 3332221 1111111 111100 110111
Q ss_pred hHHHHHHHHHHhh-hcCCcEEEEecCHHHHHHHHHHHHHC-------------------------CCCceeccCCCCHHH
Q 002040 699 DRFLRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKH-------------------------GYPCLSLHGAKDQTD 752 (976)
Q Consensus 699 ~k~~~l~~~l~~~-~~~~kvLIF~~s~~~~~~l~~~L~~~-------------------------~~~~~~lhg~~~~~~ 752 (976)
.....+..++... ..++++||||+++..|..++..|... ...+..+||+|++.+
T Consensus 220 ~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~e 299 (674)
T PRK01172 220 RSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQ 299 (674)
T ss_pred cccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHH
Confidence 1111133333332 34679999999999999999888653 124778999999999
Q ss_pred HHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC---------CCCHHHHHHHhcccCCCCC--ccEEEEEecCC
Q 002040 753 RESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (976)
Q Consensus 753 R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~---------p~s~~~y~Qr~GR~gR~g~--~g~~~~~~~~~ 821 (976)
|..+++.|++|.++|||||+++++|||+|+..+|| ++. |.+..+|.||+|||||.|. .|.+++|+...
T Consensus 300 R~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 300 RRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999999865444 432 5678899999999999984 57788776543
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=1.5e-38 Score=376.94 Aligned_cols=310 Identities=16% Similarity=0.215 Sum_probs=233.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCchHHH---------HHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLA---------FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 492 ~~Q~~~i~~il~g~d~i~~a~TGsGKT~~---------~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
.+|.++++.+++|+++|++|+||||||++ |++|.+..+.... ....+++++|++||++||.|+...+..
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999997 3334444332110 022356899999999999999999887
Q ss_pred HHhh---cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHH
Q 002040 563 FAKV---MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (976)
Q Consensus 563 ~~~~---~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~ 639 (976)
.... .++.+.+.+||... .+......+.+|+|+|++.. ...|.++++|||||||.+..++ ..+.
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~----------l~~L~~v~~VVIDEaHEr~~~~--DllL 311 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT----------LNKLFDYGTVIIDEVHEHDQIG--DIII 311 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc----------ccccccCCEEEccccccCccch--hHHH
Confidence 5543 36678889999873 22222233679999997631 1357889999999999877655 3455
Q ss_pred HHHHhcC-CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc---------chHHHHHHHHHH
Q 002040 640 RIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---------SDRFLRLLELLG 709 (976)
Q Consensus 640 ~il~~~~-~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~---------~~k~~~l~~~l~ 709 (976)
.++..+. ..+|+|+||||++..+..+ ..++.+|..+.+.+.. ...+.+.+..... ......++..+.
T Consensus 312 ~llk~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~grt--~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~ 388 (675)
T PHA02653 312 AVARKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGGT--LFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALK 388 (675)
T ss_pred HHHHHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCCc--CCCeEEEEeecCcccccchhhhHHHHHHHHHHHH
Confidence 5555443 3359999999999888776 5788888888776432 2345554432211 111122333343
Q ss_pred hhh--cCCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHh-ccCCccEEEecCcccccCCCCCCc
Q 002040 710 EWY--EKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDF-KSNVCNLLIATSVAARGLDVKELE 784 (976)
Q Consensus 710 ~~~--~~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F-~~g~~~vLVaT~v~~~GlDi~~v~ 784 (976)
... ..+.+||||+++..|+.++..|... ++.+..+||+|++. ++++..| ++|..+|||||++|++|||||+|.
T Consensus 389 ~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~ 466 (675)
T PHA02653 389 KYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT 466 (675)
T ss_pred HhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee
Confidence 322 3468999999999999999999887 79999999999975 4667777 789999999999999999999999
Q ss_pred EEEEeC---CCC---------CHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 785 LVINFD---APN---------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 785 ~VI~~d---~p~---------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
+||+++ .|. |.+.|+||+|||||. ++|.||.|+++.+
T Consensus 467 ~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~ 515 (675)
T PHA02653 467 HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDL 515 (675)
T ss_pred EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHH
Confidence 999998 554 888999999999999 7999999999765
No 53
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.1e-38 Score=384.51 Aligned_cols=303 Identities=20% Similarity=0.272 Sum_probs=239.2
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH-HHhhcCcEE
Q 002040 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMGVRC 571 (976)
Q Consensus 493 ~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~-~~~~~~~~~ 571 (976)
+-.+.+..|.+++++|++|+||||||++|.++++..+. .++++||++|||++|.|++..+.. +....|..|
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 34566777788999999999999999999999997752 246899999999999999998854 333456666
Q ss_pred EEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHH-HHHHHhcCCCC
Q 002040 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQI-TRIVQNIRPDR 649 (976)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i-~~il~~~~~~~ 649 (976)
.+.+++.. .+...+.|+|+|||+|++++... ..|.++++||||||| ++++.+|...+ ..+...++++.
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~d----~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dl 147 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQDD----PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDL 147 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhhC----cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCc
Confidence 66655542 23456899999999999988653 468999999999999 78888776544 34556678899
Q ss_pred cEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHH-----HHHHHHHhhhcCCcEEEEecCH
Q 002040 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL-----RLLELLGEWYEKGKILIFVHSQ 724 (976)
Q Consensus 650 q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~-----~l~~~l~~~~~~~kvLIF~~s~ 724 (976)
|+|+||||++... +..++.++..+.+.+...+ +.+.+.......++. .+..++.. ..+.+||||+++
T Consensus 148 qlIlmSATl~~~~---l~~~l~~~~vI~~~gr~~p---Ve~~y~~~~~~~~~~~~v~~~l~~~l~~--~~g~iLVFlpg~ 219 (819)
T TIGR01970 148 KILAMSATLDGER---LSSLLPDAPVVESEGRSFP---VEIRYLPLRGDQRLEDAVSRAVEHALAS--ETGSILVFLPGQ 219 (819)
T ss_pred eEEEEeCCCCHHH---HHHHcCCCcEEEecCccee---eeeEEeecchhhhHHHHHHHHHHHHHHh--cCCcEEEEECCH
Confidence 9999999998763 3567776666666555432 444444333333332 22222222 358999999999
Q ss_pred HHHHHHHHHHHH---CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC--------
Q 002040 725 EKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN-------- 793 (976)
Q Consensus 725 ~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~-------- 793 (976)
.++..++..|.. .++.++.+||+|++.+|..++..|.+|..+|||||+++++|||||+|++||+++.|.
T Consensus 220 ~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~ 299 (819)
T TIGR01970 220 AEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKT 299 (819)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCccccccccccc
Confidence 999999999987 478999999999999999999999999999999999999999999999999999874
Q ss_pred ----------CHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 794 ----------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 794 ----------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
|.++|+||+|||||. .+|.||.||++.+
T Consensus 300 g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 300 GITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred CCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 345699999999999 6999999998753
No 54
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=6.6e-38 Score=381.21 Aligned_cols=305 Identities=19% Similarity=0.289 Sum_probs=237.7
Q ss_pred HHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH-HhhcCcEE
Q 002040 493 IQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF-AKVMGVRC 571 (976)
Q Consensus 493 ~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~-~~~~~~~~ 571 (976)
+-.+.+..+.+++++|++|+||||||++|.++++.... .++++||++|||++|.|++..+... ....|..+
T Consensus 9 ~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~V 80 (812)
T PRK11664 9 VLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETV 80 (812)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceE
Confidence 34566777788999999999999999999999886521 1347999999999999999988643 34457777
Q ss_pred EEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchH-HHHHHHhcCCCC
Q 002040 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQ-ITRIVQNIRPDR 649 (976)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~-i~~il~~~~~~~ 649 (976)
...+++... ....+.|+|+|||+|++++... ..|.++++||||||| ++++.++... +..++..++++.
T Consensus 81 Gy~vr~~~~------~~~~t~I~v~T~G~Llr~l~~d----~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~l 150 (812)
T PRK11664 81 GYRMRAESK------VGPNTRLEVVTEGILTRMIQRD----PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDL 150 (812)
T ss_pred EEEecCccc------cCCCCcEEEEChhHHHHHHhhC----CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccc
Confidence 777776532 2345789999999999988653 468999999999999 4666654333 345667788899
Q ss_pred cEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHH-HHHHHHhhh--cCCcEEEEecCHHH
Q 002040 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR-LLELLGEWY--EKGKILIFVHSQEK 726 (976)
Q Consensus 650 q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~-l~~~l~~~~--~~~kvLIF~~s~~~ 726 (976)
|+|+||||++.. ....++.++..+.+.+..+ .+.+.+.......++.. +...|.... ..+.+||||+++.+
T Consensus 151 qlilmSATl~~~---~l~~~~~~~~~I~~~gr~~---pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~e 224 (812)
T PRK11664 151 KLLIMSATLDND---RLQQLLPDAPVIVSEGRSF---PVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGE 224 (812)
T ss_pred eEEEEecCCCHH---HHHHhcCCCCEEEecCccc---cceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHH
Confidence 999999999875 2356676666666655433 35555544444444431 111222221 35899999999999
Q ss_pred HHHHHHHHHH---CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC----------
Q 002040 727 CDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (976)
Q Consensus 727 ~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~---------- 793 (976)
+..++..|.. .++.+..+||+|++.+|..++..|.+|..+|||||+++++||||++|++||+++.+.
T Consensus 225 i~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 225 IQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 9999999987 578899999999999999999999999999999999999999999999999977664
Q ss_pred --------CHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 794 --------HYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 794 --------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
|.++|+||+||+||. .+|.||.||++.+
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~ 340 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQ 340 (812)
T ss_pred ceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHH
Confidence 336899999999999 5999999999753
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.1e-37 Score=390.45 Aligned_cols=296 Identities=24% Similarity=0.309 Sum_probs=241.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|+++|..++|.++.|+|++++||||||||+ |+++++..+.. .++++|||+||++||.|++..++.++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 576 7999999999999999999999999999996 55665555432 37889999999999999999999999
Q ss_pred hhcCcEEEEeeCCCCh-----HHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-------
Q 002040 565 KVMGVRCVPVYGGSGV-----AQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD------- 631 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~-----~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~------- 631 (976)
...++.+.+++|+.+. ..+...+.. +++|+|+||++|.+++.. ..+..+++|||||||+|++
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~-----l~~~~~~~lVvDEaD~~L~~~k~id~ 222 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE-----LPKKKFDFVFVDDVDAVLKSSKNIDK 222 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh-----ccccccCEEEEEChHHhhhcccchhh
Confidence 9889888888877642 333445554 589999999999988752 3456699999999999986
Q ss_pred ----cCCc-hHHHHHHHhcCC------------------------CCcEEEEeccCcHH-HHHHHHHHcCCCeEEEeCCc
Q 002040 632 ----MGFE-PQITRIVQNIRP------------------------DRQTVLFSATFPRQ-VEILARKVLNKPVEIQVGGR 681 (976)
Q Consensus 632 ----~~f~-~~i~~il~~~~~------------------------~~q~i~~SAT~~~~-~~~l~~~~l~~~~~i~~~~~ 681 (976)
+||. ..+..++..++. ..|+|+||||+++. +.. .++..+..+.++..
T Consensus 223 ~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~ 299 (1176)
T PRK09401 223 LLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP 299 (1176)
T ss_pred HHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc
Confidence 6785 567777777654 68999999999874 332 23445555666666
Q ss_pred ccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHH---HHHHHHHHHHCCCCceeccCCCCHHHHHHHHH
Q 002040 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (976)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~---~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~ 758 (976)
.....+|.+.+.... .+...|..++... +.++||||++... ++.|+.+|...|+.+..+||+| ...++
T Consensus 300 ~~~~rnI~~~yi~~~--~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 300 VFYLRNIVDSYIVDE--DSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFE 370 (1176)
T ss_pred ccccCCceEEEEEcc--cHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHH
Confidence 556667877776554 5677777777654 3579999999776 9999999999999999999999 33469
Q ss_pred HhccCCccEEEe----cCcccccCCCCC-CcEEEEeCCCC------CHHHHHHHhcccC
Q 002040 759 DFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPN------HYEDYVHRVGRTG 806 (976)
Q Consensus 759 ~F~~g~~~vLVa----T~v~~~GlDi~~-v~~VI~~d~p~------s~~~y~Qr~GR~g 806 (976)
.|++|+++|||| |++++||||+|+ |.+||||+.|. ....|.|++||+-
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 999999999999 699999999999 89999999999 5678999999985
No 56
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=340.64 Aligned_cols=317 Identities=32% Similarity=0.548 Sum_probs=250.7
Q ss_pred CeEEEEccCHHHHHHHHHHHHHHHhhc---CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCC
Q 002040 541 PVGLIMAPTRELVQQIHSDIRKFAKVM---GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (976)
Q Consensus 541 ~~vLIl~Ptr~La~Q~~~~~~~~~~~~---~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~ 617 (976)
|.+||+-|.++||.|.++.|.+|-..+ .++..++.||.-...|...++.|++|||+||++|.+.+... +..|.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g---~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKG---LVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhcc---ceeeee
Confidence 788999999999999999888775443 45666889999999999999999999999999999998653 367889
Q ss_pred ceEEEecCcccccccCCchHHHHHHHhcCC------CCcEEEEeccCcH-HHHHHHHHHcCCCeEEEeCCcccccCCceE
Q 002040 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRP------DRQTVLFSATFPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (976)
Q Consensus 618 ~~~vVlDEah~~~~~~f~~~i~~il~~~~~------~~q~i~~SAT~~~-~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q 690 (976)
+.++|+|||+.++..++...|..+..+++. ..|.++.|||+.. .+..+...+++.|..+.+.+...++..+.+
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHh 443 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHH 443 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhcc
Confidence 999999999999998998888888877753 3689999999754 455677888999999888888777776666
Q ss_pred EEEecCcc--hHHHHH----------------------------HHHHHh--------hhcCCcEEEEecCHHHHHHHHH
Q 002040 691 LVEVRPES--DRFLRL----------------------------LELLGE--------WYEKGKILIFVHSQEKCDALFR 732 (976)
Q Consensus 691 ~~~~~~~~--~k~~~l----------------------------~~~l~~--------~~~~~kvLIF~~s~~~~~~l~~ 732 (976)
.+....+. .-+..| ..+|.- .+...++||||.++.+|+.|..
T Consensus 444 vv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer 523 (725)
T KOG0349|consen 444 VVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLER 523 (725)
T ss_pred ceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHH
Confidence 55432221 111111 111110 1123589999999999999999
Q ss_pred HHHHCC---CCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCC
Q 002040 733 DLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (976)
Q Consensus 733 ~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g 809 (976)
++.+.| |.|+++||+..+.+|...++.|+.+.+++||||+++++||||.++-+|||..+|..-.+|+|||||+||+.
T Consensus 524 ~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 524 MMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred HHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhh
Confidence 999864 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEecCCCcC--------------------------------chHHHHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 002040 810 RKGCAITFISEEDAK--------------------------------YSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (976)
Q Consensus 810 ~~g~~~~~~~~~d~~--------------------------------~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~~ 857 (976)
+-|.++.++....++ .+..+...|....++|...+.-..+.|-.++-.
T Consensus 604 rmglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~vpv~~fdgkv~y 683 (725)
T KOG0349|consen 604 RMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMDVPVNDFDGKVVY 683 (725)
T ss_pred hcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCCCcccccCCeEEe
Confidence 899999887543332 344455555555555555555555555555544
Q ss_pred hhh
Q 002040 858 GLE 860 (976)
Q Consensus 858 ~~~ 860 (976)
+..
T Consensus 684 gqk 686 (725)
T KOG0349|consen 684 GQK 686 (725)
T ss_pred ccc
Confidence 433
No 57
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.6e-37 Score=352.41 Aligned_cols=362 Identities=20% Similarity=0.282 Sum_probs=282.4
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHH
Q 002040 479 METIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (976)
Q Consensus 479 ~~~l~~~~~~~p~~~Q~~~i~~il~g------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~L 552 (976)
...+..++|. ||..|..++..|... .+-|++|..|||||++++++|+..+.. |.++.+|+||--|
T Consensus 253 ~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAPTEIL 323 (677)
T COG1200 253 AKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAPTEIL 323 (677)
T ss_pred HHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEeccHHHH
Confidence 3445678875 999999999999854 468999999999999999999988653 7889999999999
Q ss_pred HHHHHHHHHHHHhhcCcEEEEeeCCCChH---HHHHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccc
Q 002040 553 VQQIHSDIRKFAKVMGVRCVPVYGGSGVA---QQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (976)
Q Consensus 553 a~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~ 628 (976)
|.|++..+.+++..+|+.|..++|...-. .....+..| .+|||+|+.-+.+- ..++++.+||+||-||
T Consensus 324 A~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~--------V~F~~LgLVIiDEQHR 395 (677)
T COG1200 324 AEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK--------VEFHNLGLVIIDEQHR 395 (677)
T ss_pred HHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc--------eeecceeEEEEecccc
Confidence 99999999999999999999999976543 345566666 79999998766443 4688899999999999
Q ss_pred ccccCCchHHHHHHHhcCC-CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHH
Q 002040 629 MFDMGFEPQITRIVQNIRP-DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLEL 707 (976)
Q Consensus 629 ~~~~~f~~~i~~il~~~~~-~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~ 707 (976)
|+-.....+..... .+.+|+|||||-|.. ++...+++.....+...+.....|...+.. ..+...+++.
T Consensus 396 -----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdElP~GRkpI~T~~i~---~~~~~~v~e~ 465 (677)
T COG1200 396 -----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDELPPGRKPITTVVIP---HERRPEVYER 465 (677)
T ss_pred -----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccCCCCCCceEEEEec---cccHHHHHHH
Confidence 66677777777777 789999999987764 555566665444444444444455443332 2344455555
Q ss_pred HHhh-hcCCcEEEEecCHH--------HHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccc
Q 002040 708 LGEW-YEKGKILIFVHSQE--------KCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (976)
Q Consensus 708 l~~~-~~~~kvLIF~~s~~--------~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~ 776 (976)
+... ..+.++.|.|+-++ .+..++..|... ++.+..+||.|+..+++.+|..|++|+++|||||.+++.
T Consensus 466 i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEV 545 (677)
T COG1200 466 IREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEV 545 (677)
T ss_pred HHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEe
Confidence 5443 34568999999765 445666677643 667999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCCC-HHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 002040 777 GLDVKELELVINFDAPNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKV 855 (976)
Q Consensus 777 GlDi~~v~~VI~~d~p~s-~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~ 855 (976)
|||+|+++++|++++-.. .++.-|--||+||.+.+++|++++.+........-+ ..|.
T Consensus 546 GVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~~~~a~~RL--------------~im~------- 604 (677)
T COG1200 546 GVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPLSEVAKQRL--------------KIMR------- 604 (677)
T ss_pred cccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCCChhHHHHH--------------HHHH-------
Confidence 999999999999999876 455666679999999999999999764322211111 1111
Q ss_pred hhhhhhccCCCCCCCCcccchhHHHHHHHHHHHHHHHcCCCCCC
Q 002040 856 NQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGFEEDK 899 (976)
Q Consensus 856 ~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 899 (976)
-+..||.+++.|+++||.|..++.+|+|+.+..
T Consensus 605 -----------~t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f~ 637 (677)
T COG1200 605 -----------ETTDGFVIAEEDLKLRGPGELLGTRQSGLPEFR 637 (677)
T ss_pred -----------hcCCcceehhhhHhccCCccccCCcccCCcceE
Confidence 136799999999999999999999999976543
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-37 Score=354.72 Aligned_cols=329 Identities=23% Similarity=0.373 Sum_probs=259.3
Q ss_pred HHHH-HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHH
Q 002040 480 ETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (976)
Q Consensus 480 ~~l~-~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 558 (976)
..|+ -+||..+.|-|.++|..+++|+|+|++.|||.||+++|.+|++-. .| .+|||.|..+|......
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 3454 389999999999999999999999999999999999999999843 23 68999999999876666
Q ss_pred HHHHHHhhcCcEEEEeeCCCChHHHH---HHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-
Q 002040 559 DIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG- 633 (976)
Q Consensus 559 ~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~- 633 (976)
.+.. .|+.+.++.+..+..+.. ..+..| .+|++.+|++|..-..... ..-..+.+|||||||++.+||
T Consensus 76 ~l~~----~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~---L~~~~i~l~vIDEAHCiSqWGh 148 (590)
T COG0514 76 QLEA----AGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL---LKRLPISLVAIDEAHCISQWGH 148 (590)
T ss_pred HHHH----cCceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH---HHhCCCceEEechHHHHhhcCC
Confidence 6665 688888888887666553 344444 6999999999854322110 123458899999999999998
Q ss_pred -CchHHHHHHHhc--CCCCcEEEEeccCcHHHHHHHHHHcCCCe-EEEeCCcccccCCceEEEEecC-cchHHHHHHHHH
Q 002040 634 -FEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLNKPV-EIQVGGRSVVNKDITQLVEVRP-ESDRFLRLLELL 708 (976)
Q Consensus 634 -f~~~i~~il~~~--~~~~q~i~~SAT~~~~~~~l~~~~l~~~~-~i~~~~~~~~~~~i~q~~~~~~-~~~k~~~l~~~l 708 (976)
|.+.+..+-... -++..++.||||.++.+...+...|.-.. .+.+. ++..++|...+.... ...++. +|
T Consensus 149 dFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~--sfdRpNi~~~v~~~~~~~~q~~----fi 222 (590)
T COG0514 149 DFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRG--SFDRPNLALKVVEKGEPSDQLA----FL 222 (590)
T ss_pred ccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEe--cCCCchhhhhhhhcccHHHHHH----HH
Confidence 999888764433 24788999999999988766665554322 22222 233333332222211 222222 33
Q ss_pred Hh--hhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEE
Q 002040 709 GE--WYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV 786 (976)
Q Consensus 709 ~~--~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~V 786 (976)
.. ....+..||||.|+..++.++..|...|+.+..+||+|+..+|..+.+.|..+.++|||||.++++|||-|+|.+|
T Consensus 223 ~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfV 302 (590)
T COG0514 223 ATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFV 302 (590)
T ss_pred HhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEE
Confidence 32 2345678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHH
Q 002040 787 INFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (976)
Q Consensus 787 I~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~ 832 (976)
|||++|.+++.|+|-+|||||.|.+..|++||++.|......++..
T Consensus 303 iH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 303 IHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred EEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 9999999999999999999999999999999999987766666554
No 59
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=4.1e-37 Score=363.50 Aligned_cols=340 Identities=24% Similarity=0.333 Sum_probs=267.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
|++.+.+.+... |..|||.|.+|||.|.+|+++|++||||||||+++.+|++..|..........+-.||+|+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 577788888877 9999999999999999999999999999999999999999999886322234567899999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC
Q 002040 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (976)
Q Consensus 554 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~ 633 (976)
..+...+..+...+|+.+.+-+|.++..+....+++.++|+|+||+.|.-+|... .....|.++.+|||||+|.+....
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~-~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSP-KFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCH-HHHHHhcCCcEEEeehhhhhhccc
Confidence 9999999999999999999999999988888888888999999999997666442 233568899999999999887655
Q ss_pred CchHHHHH---HHhcCCCCcEEEEeccCcHHHHHHHHHHcCC--CeEEEeCCcccccCCceEEEEecC-------cchHH
Q 002040 634 FEPQITRI---VQNIRPDRQTVLFSATFPRQVEILARKVLNK--PVEIQVGGRSVVNKDITQLVEVRP-------ESDRF 701 (976)
Q Consensus 634 f~~~i~~i---l~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~--~~~i~~~~~~~~~~~i~q~~~~~~-------~~~k~ 701 (976)
-+.++.-- +..+.++.|.|++|||..+.. .+++.+.+. +..|... .......+.-...... ....+
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~-~varfL~g~~~~~~Iv~~-~~~k~~~i~v~~p~~~~~~~~~~~~~~~ 243 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVGPPE-EVAKFLVGFGDPCEIVDV-SAAKKLEIKVISPVEDLIYDEELWAALY 243 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccCCHH-HHHHHhcCCCCceEEEEc-ccCCcceEEEEecCCccccccchhHHHH
Confidence 44443322 333344899999999987543 345544444 3333211 1111111211111111 11223
Q ss_pred HHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCC-CCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCC
Q 002040 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (976)
Q Consensus 702 ~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi 780 (976)
..+.+++.+ ...+|||+||+..++.|+..|.+.+ ..+..+||.++...|..+.+.|++|..+++|||+.++-||||
T Consensus 244 ~~i~~~v~~---~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDi 320 (814)
T COG1201 244 ERIAELVKK---HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDI 320 (814)
T ss_pred HHHHHHHhh---cCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhcccc
Confidence 333444433 3589999999999999999999886 899999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHhcccCC-CCCccEEEEEecC
Q 002040 781 KELELVINFDAPNHYEDYVHRVGRTGR-AGRKGCAITFISE 820 (976)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~Qr~GR~gR-~g~~g~~~~~~~~ 820 (976)
.+++.||+|+.|.+...++||+||+|. .|....++++...
T Consensus 321 G~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 321 GDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred CCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999996 4555666665544
No 60
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.3e-37 Score=358.18 Aligned_cols=322 Identities=21% Similarity=0.236 Sum_probs=249.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|+|+|..+++.++.|+ |+.+.||+|||++|++|++.++. .|+.|+||+||++||.|.+.++..++
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 565 58999999999999999 99999999999999999998754 36789999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCC----------------------cccccCCceEE
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG----------------------KITNLRRVTYL 621 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~----------------------~~~~l~~~~~v 621 (976)
..+|+.+.+++||.+.. ...+..+++|+|+|..-| .++|..+-. .......+.|+
T Consensus 169 ~~lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~a 246 (656)
T PRK12898 169 EALGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFA 246 (656)
T ss_pred hhcCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccccee
Confidence 99999999999998654 344556799999999987 455543310 01124567899
Q ss_pred EecCccccc-cc----------------------------------CCc---------------hHHHHH----------
Q 002040 622 VMDEADRMF-DM----------------------------------GFE---------------PQITRI---------- 641 (976)
Q Consensus 622 VlDEah~~~-~~----------------------------------~f~---------------~~i~~i---------- 641 (976)
||||+|.++ |. .|. ..+..+
T Consensus 247 IvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~ 326 (656)
T PRK12898 247 IVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRG 326 (656)
T ss_pred EeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhccc
Confidence 999999652 10 000 000000
Q ss_pred --------HHhc------CCC-----------------------------------------------------------
Q 002040 642 --------VQNI------RPD----------------------------------------------------------- 648 (976)
Q Consensus 642 --------l~~~------~~~----------------------------------------------------------- 648 (976)
...+ ..+
T Consensus 327 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr 406 (656)
T PRK12898 327 AVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFR 406 (656)
T ss_pred chHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHH
Confidence 0000 000
Q ss_pred --CcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHH
Q 002040 649 --RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQE 725 (976)
Q Consensus 649 --~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~ 725 (976)
.++.+||||.+.....+...|..+++.|...... .....+.+.+.....|+..|...+..... +.++||||+|+.
T Consensus 407 ~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 407 RYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred hhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 2367999999988888888887777655433222 11233444556677899999998877542 468999999999
Q ss_pred HHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCC---CCc-----EEEEeCCCCCHHH
Q 002040 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYED 797 (976)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~---~v~-----~VI~~d~p~s~~~ 797 (976)
.++.|+..|...|+++..|||.++ .++..+..|..+...|||||++++||+||+ +|. +||+|+.|.+...
T Consensus 485 ~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~ 562 (656)
T PRK12898 485 ASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARI 562 (656)
T ss_pred HHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHH
Confidence 999999999999999999999865 455556666666667999999999999999 665 9999999999999
Q ss_pred HHHHhcccCCCCCccEEEEEecCCCc
Q 002040 798 YVHRVGRTGRAGRKGCAITFISEEDA 823 (976)
Q Consensus 798 y~Qr~GR~gR~g~~g~~~~~~~~~d~ 823 (976)
|+|++|||||.|.+|.|++|++.+|.
T Consensus 563 y~hr~GRTGRqG~~G~s~~~is~eD~ 588 (656)
T PRK12898 563 DRQLAGRCGRQGDPGSYEAILSLEDD 588 (656)
T ss_pred HHHhcccccCCCCCeEEEEEechhHH
Confidence 99999999999999999999998664
No 61
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=8.4e-37 Score=382.44 Aligned_cols=307 Identities=21% Similarity=0.261 Sum_probs=227.2
Q ss_pred EEcCCCCchHHHHHHHHHHHHhcCCCC-----CCCCCCeEEEEccCHHHHHHHHHHHHHHHh------------hcCcEE
Q 002040 509 GVAKTGSGKTLAFVLPMLRHIKDQPPV-----AAGDGPVGLIMAPTRELVQQIHSDIRKFAK------------VMGVRC 571 (976)
Q Consensus 509 ~~a~TGsGKT~~~~l~il~~l~~~~~~-----~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~------------~~~~~~ 571 (976)
|++|||||||++|.+|++..+...+.. ....+.++|||+|+++|+.|+++.++..+. .+++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 112468999999999999999998875321 247889
Q ss_pred EEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchH----HHHHHHhcCC
Q 002040 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ----ITRIVQNIRP 647 (976)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~----i~~il~~~~~ 647 (976)
..++|+++..++...++..++|||+||++|..+|.+. ....|+++.+|||||+|.|++..++.+ +..+...+..
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk--~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR--ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh--hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCC
Confidence 9999999998887777778999999999998877542 224689999999999999987654444 4445455567
Q ss_pred CCcEEEEeccCcHHHHHHHHHHcC-CCeEEEeCCcccccCCceEEEEecCc------------------c-hHHHHH-HH
Q 002040 648 DRQTVLFSATFPRQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVRPE------------------S-DRFLRL-LE 706 (976)
Q Consensus 648 ~~q~i~~SAT~~~~~~~l~~~~l~-~~~~i~~~~~~~~~~~i~q~~~~~~~------------------~-~k~~~l-~~ 706 (976)
..|+|+||||+++. ..++..+.. .++.+.. ........+...+..... . .....+ ..
T Consensus 159 ~~QrIgLSATI~n~-eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~ 236 (1490)
T PRK09751 159 SAQRIGLSATVRSA-SDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETG 236 (1490)
T ss_pred CCeEEEEEeeCCCH-HHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHH
Confidence 78999999999874 455544333 3444422 211112222221211110 0 000111 12
Q ss_pred HHHhhhcCCcEEEEecCHHHHHHHHHHHHHCC---------------------------------CCceeccCCCCHHHH
Q 002040 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHG---------------------------------YPCLSLHGAKDQTDR 753 (976)
Q Consensus 707 ~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~---------------------------------~~~~~lhg~~~~~~R 753 (976)
++.......++||||||+..|+.++..|.+.. +.+..+||+|++.+|
T Consensus 237 il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR 316 (1490)
T PRK09751 237 ILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQR 316 (1490)
T ss_pred HHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHH
Confidence 33333446789999999999999999997631 125689999999999
Q ss_pred HHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC-CCccEEEEEec
Q 002040 754 ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-GRKGCAITFIS 819 (976)
Q Consensus 754 ~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~-g~~g~~~~~~~ 819 (976)
..+++.|++|.++|||||+++++||||+.+++||+|+.|.+...|+||+||+||. |..+.++++..
T Consensus 317 ~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 317 AITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred HHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999996 33445554333
No 62
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=8e-37 Score=389.73 Aligned_cols=322 Identities=20% Similarity=0.239 Sum_probs=251.1
Q ss_pred HHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH
Q 002040 478 IMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (976)
Q Consensus 478 l~~~l~~-~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 556 (976)
+.+.++. +|| .|+++|.++|+.+++|+|++++||||+|||++++++++.... .++++|||+||++|+.|+
T Consensus 68 ~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Qi 138 (1638)
T PRK14701 68 FEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQT 138 (1638)
T ss_pred HHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHHH
Confidence 3455655 899 699999999999999999999999999999965655554321 367899999999999999
Q ss_pred HHHHHHHHhhc--CcEEEEeeCCCChHHHH---HHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccc
Q 002040 557 HSDIRKFAKVM--GVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (976)
Q Consensus 557 ~~~~~~~~~~~--~~~~~~~~gg~~~~~~~---~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~ 630 (976)
+..+..++..+ ++.+.+++||.+..++. ..+..+ ++|+|+||++|.+.+... . ..++++|||||||+|+
T Consensus 139 ~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~-~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 139 VEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----K-HLKFDFIFVDDVDAFL 213 (1638)
T ss_pred HHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----h-hCCCCEEEEECceecc
Confidence 99999998875 46677888998877663 345554 899999999998776431 1 2678999999999998
Q ss_pred c-----------cCCchHHHH----HHH----------------------hcCCCCc-EEEEeccCcHHHHHHHHHHcCC
Q 002040 631 D-----------MGFEPQITR----IVQ----------------------NIRPDRQ-TVLFSATFPRQVEILARKVLNK 672 (976)
Q Consensus 631 ~-----------~~f~~~i~~----il~----------------------~~~~~~q-~i~~SAT~~~~~~~l~~~~l~~ 672 (976)
. +||.+.+.. |+. .++...| ++++|||+++... ...++..
T Consensus 214 ~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~--~~~l~~~ 291 (1638)
T PRK14701 214 KASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGD--RVKLYRE 291 (1638)
T ss_pred ccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhH--HHHHhhc
Confidence 6 588887764 332 2334455 6779999986422 1234566
Q ss_pred CeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHH---HHHHHHHHHHCCCCceeccCCCC
Q 002040 673 PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEK---CDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 673 ~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~---~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
+..+.++.......++.+.+.......+ ..|+.+|... +.++||||++... |+.|+..|...|+.+..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 7777777666566677777766554444 4677777654 4578999999775 589999999999999999995
Q ss_pred HHHHHHHHHHhccCCccEEEec----CcccccCCCCC-CcEEEEeCCCC---CHHHHHHHh-------------cccCCC
Q 002040 750 QTDRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAPN---HYEDYVHRV-------------GRTGRA 808 (976)
Q Consensus 750 ~~~R~~~~~~F~~g~~~vLVaT----~v~~~GlDi~~-v~~VI~~d~p~---s~~~y~Qr~-------------GR~gR~ 808 (976)
|..+++.|++|.++||||| ++++||||+|+ |.+|||||+|. +...|.|-. ||+||.
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 8899999999999999999 58999999999 99999999999 777666554 999999
Q ss_pred CCccEEEEEecCCCc
Q 002040 809 GRKGCAITFISEEDA 823 (976)
Q Consensus 809 g~~g~~~~~~~~~d~ 823 (976)
|.++.+++.+...+.
T Consensus 444 g~~~~~~~~~~~~~~ 458 (1638)
T PRK14701 444 GIPIEGVLDVFPEDV 458 (1638)
T ss_pred CCcchhHHHhHHHHH
Confidence 988777654444433
No 63
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.5e-36 Score=362.33 Aligned_cols=361 Identities=20% Similarity=0.246 Sum_probs=287.6
Q ss_pred HHcCCCCCcHHHHHHHHHHhc----C--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH
Q 002040 483 RKLNYEKPMPIQAQALPVIMS----G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (976)
Q Consensus 483 ~~~~~~~p~~~Q~~~i~~il~----g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 556 (976)
..|+|. .||-|..||..|.. + .|-||||..|.|||.+++-+++..++ +|++|.|||||.-||.|+
T Consensus 589 ~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--------~GKQVAvLVPTTlLA~QH 659 (1139)
T COG1197 589 ASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--------DGKQVAVLVPTTLLAQQH 659 (1139)
T ss_pred hcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--------CCCeEEEEcccHHhHHHH
Confidence 356765 79999999999874 3 58999999999999999999998865 478999999999999999
Q ss_pred HHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc
Q 002040 557 HSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (976)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~ 632 (976)
++.|+.-+..+++++..+..-.+..++. ..++.| .+|||+|+-.| . +...+.++++|||||-|+
T Consensus 660 y~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL----~----kdv~FkdLGLlIIDEEqR---- 727 (1139)
T COG1197 660 YETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLL----S----KDVKFKDLGLLIIDEEQR---- 727 (1139)
T ss_pred HHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhh----C----CCcEEecCCeEEEechhh----
Confidence 9999999999999999988877777664 444444 69999997644 2 225788899999999998
Q ss_pred CCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh
Q 002040 633 GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY 712 (976)
Q Consensus 633 ~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~ 712 (976)
|+-.....+..++.+..+|.|||||-|..-.++...+.+...|.. .+.....|..++.-. +-...-..++.+..
T Consensus 728 -FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T--PP~~R~pV~T~V~~~---d~~~ireAI~REl~ 801 (1139)
T COG1197 728 -FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT--PPEDRLPVKTFVSEY---DDLLIREAILRELL 801 (1139)
T ss_pred -cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccC--CCCCCcceEEEEecC---ChHHHHHHHHHHHh
Confidence 677778889999999999999999988777777666665544332 122222333222222 22222234445556
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD 790 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d 790 (976)
.+|++...+|.++.+..++..|... ...+++.||.|+..+-+.+|..|.+|.++|||||.+++.|||||+++++|+.+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~ 881 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIER 881 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEec
Confidence 6899999999999999999999886 56789999999999999999999999999999999999999999999999988
Q ss_pred CCCC-HHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHHHHHhhhhhhccCCCCCC
Q 002040 791 APNH-YEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGG 869 (976)
Q Consensus 791 ~p~s-~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~~~~~~~~~~~~~g 869 (976)
.... .++..|.-||+||..+.++||.+|.+... |...+..-+..+++ ...-|
T Consensus 882 AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~--------------------lT~~A~kRL~aI~~-------~~~LG 934 (1139)
T COG1197 882 ADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKA--------------------LTEDAEKRLEAIAS-------FTELG 934 (1139)
T ss_pred cccccHHHHHHhccccCCccceEEEEEeecCccc--------------------cCHHHHHHHHHHHh-------hhhcC
Confidence 8775 67888999999999999999999976432 22233333333321 22348
Q ss_pred CCcccchhHHHHHHHHHHHHHHHcCCCC
Q 002040 870 SGFKFNEEEDEKRKAAKKAQAKEYGFEE 897 (976)
Q Consensus 870 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~ 897 (976)
+||.++.+|+++||+|..+|..|+|+-.
T Consensus 935 aGf~lA~~DLeIRGaGNlLG~eQSG~I~ 962 (1139)
T COG1197 935 AGFKLAMHDLEIRGAGNLLGEEQSGHIE 962 (1139)
T ss_pred chHHHHhcchhccccccccCccccCchh
Confidence 9999999999999999999999999754
No 64
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-35 Score=319.37 Aligned_cols=323 Identities=23% Similarity=0.292 Sum_probs=238.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
...++.+|.......+.+ ++|++.|||.|||+++++.|.+.+... .+ ++|+|+||+.|+.|++..|.+++..
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 346788999888887765 999999999999999999998887764 23 8999999999999999999998776
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
....++.++|.....+....+ ....|+|+||..+.+-|..+ ..++.++.+||+||||+-....-...+...+....
T Consensus 85 p~~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~G---rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~ 160 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKAG---RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSA 160 (542)
T ss_pred ChhheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhcC---ccChHHceEEEechhhhccCcchHHHHHHHHHHhc
Confidence 666788888887776654444 44799999999998877653 37889999999999997543221222333333344
Q ss_pred CCCcEEEEeccCcHHHHHH---HHHHcCCCeEEEe---------------------------------------------
Q 002040 647 PDRQTVLFSATFPRQVEIL---ARKVLNKPVEIQV--------------------------------------------- 678 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l---~~~~l~~~~~i~~--------------------------------------------- 678 (976)
.++.+|++||||....+.+ +..+.-..+.+..
T Consensus 161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999974432211 1111000000000
Q ss_pred ------CCcccccC--------------C---------------------------------------------------
Q 002040 679 ------GGRSVVNK--------------D--------------------------------------------------- 687 (976)
Q Consensus 679 ------~~~~~~~~--------------~--------------------------------------------------- 687 (976)
........ .
T Consensus 241 ~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~ 320 (542)
T COG1111 241 ELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA 320 (542)
T ss_pred HcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHH
Confidence 00000000 0
Q ss_pred ----------------ceEEEEecCcchHHHHHHHHHHhhhc---CCcEEEEecCHHHHHHHHHHHHHCCCCce-ecc--
Q 002040 688 ----------------ITQLVEVRPESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCL-SLH-- 745 (976)
Q Consensus 688 ----------------i~q~~~~~~~~~k~~~l~~~l~~~~~---~~kvLIF~~s~~~~~~l~~~L~~~~~~~~-~lh-- 745 (976)
............|+..+..++...+. ..++|||++.+.+++.+.++|...+..+. .+-
T Consensus 321 a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQ 400 (542)
T COG1111 321 AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQ 400 (542)
T ss_pred HHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeec
Confidence 00000011123355555666665552 34899999999999999999999887774 333
Q ss_pred ------CCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 002040 746 ------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 746 ------g~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
.||+|.++..++..|++|.++|||||++++.|||||.+++||+|++..|+..++||.|||||. +.|.+|+|++
T Consensus 401 a~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 401 ASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred cccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEe
Confidence 479999999999999999999999999999999999999999999999999999999999998 7999999999
Q ss_pred CCC
Q 002040 820 EED 822 (976)
Q Consensus 820 ~~d 822 (976)
...
T Consensus 480 ~gt 482 (542)
T COG1111 480 EGT 482 (542)
T ss_pred cCc
Confidence 873
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.3e-36 Score=338.81 Aligned_cols=304 Identities=21% Similarity=0.239 Sum_probs=214.1
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH----
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA---- 581 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---- 581 (976)
+++++||||||||++|++|++..+... .+.+++|++|+++|+.|++..+..++. ..+..++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~---~~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFG---SNLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhC---cccEEeeccHHHHHHhc
Confidence 589999999999999999999876532 356899999999999999999998753 2344444433211
Q ss_pred -------HH-HHHHh------cCCeEEEeCchhHHHHHHhcCC-cccccC--CceEEEecCcccccccCCchHHHHHHHh
Q 002040 582 -------QQ-ISELK------RGTEIVVCTPGRMIDILCTSGG-KITNLR--RVTYLVMDEADRMFDMGFEPQITRIVQN 644 (976)
Q Consensus 582 -------~~-~~~l~------~~~~Iiv~Tp~~L~~~l~~~~~-~~~~l~--~~~~vVlDEah~~~~~~f~~~i~~il~~ 644 (976)
.. ...+. ...+|+|+||+.++..+..... ....+. ..++|||||||.++.+++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 01 01111 1368999999999887754211 111111 23799999999998765443 5555554
Q ss_pred cC-CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEE--ecCcchHHHHHHHHHHhhhcCCcEEEEe
Q 002040 645 IR-PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE--VRPESDRFLRLLELLGEWYEKGKILIFV 721 (976)
Q Consensus 645 ~~-~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~--~~~~~~k~~~l~~~l~~~~~~~kvLIF~ 721 (976)
+. .+.|+|+||||+|..+..++..+...+....+...... ....+.+. ......+...+..++.....++++||||
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~ 229 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEER-RFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIV 229 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcccc-ccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEE
Confidence 43 57899999999998776666555433221111111100 00112221 1122344555555555545578999999
Q ss_pred cCHHHHHHHHHHHHHCCC--CceeccCCCCHHHHHHH----HHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCH
Q 002040 722 HSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDREST----ISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHY 795 (976)
Q Consensus 722 ~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~----~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~ 795 (976)
+++..|+.++..|.+.+. .+..+||++++.+|..+ +..|++|...|||||+++++||||+ +++||++..| +
T Consensus 230 ~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~ 306 (358)
T TIGR01587 230 NTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--I 306 (358)
T ss_pred CCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--H
Confidence 999999999999988766 49999999999999764 8999999999999999999999995 8899988776 7
Q ss_pred HHHHHHhcccCCCCCc----cEEEEEecCCCc
Q 002040 796 EDYVHRVGRTGRAGRK----GCAITFISEEDA 823 (976)
Q Consensus 796 ~~y~Qr~GR~gR~g~~----g~~~~~~~~~d~ 823 (976)
..|+||+||+||.|.. |.+|+|....+.
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8999999999998754 367777765444
No 66
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.6e-35 Score=346.64 Aligned_cols=301 Identities=16% Similarity=0.148 Sum_probs=221.6
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
...|+++|.++++.++.+.++|+++|||+|||++++..+...+.. ...++||||||++|+.||.+.|.+++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~-------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLEN-------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 457999999999999999999999999999999765433222222 1347999999999999999999998754
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
....+..+++|.... .+.+|+|+||++|..... ..+.++++|||||||++.. ..+..++..++
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~------~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~ 247 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK------EWFDQFGMVIVDECHLFTG----KSLTSIITKLD 247 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh------hhccccCEEEEEchhcccc----hhHHHHHHhhh
Confidence 445566677776432 347999999999865431 2467899999999999864 45667777777
Q ss_pred CCCcEEEEeccCcHHHHH-H-HHHHcCCCeEEEeCCcccc------cCCceEEEE---------------------ecCc
Q 002040 647 PDRQTVLFSATFPRQVEI-L-ARKVLNKPVEIQVGGRSVV------NKDITQLVE---------------------VRPE 697 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~-l-~~~~l~~~~~i~~~~~~~~------~~~i~q~~~---------------------~~~~ 697 (976)
+.+++|+||||++..... + ...+++ |+...+...... ...+..... +...
T Consensus 248 ~~~~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~ 326 (501)
T PHA02558 248 NCKFKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSH 326 (501)
T ss_pred ccceEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhcc
Confidence 778999999999753221 1 111222 222222111000 000000000 0111
Q ss_pred chHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEec-Cccc
Q 002040 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAA 775 (976)
Q Consensus 698 ~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT-~v~~ 775 (976)
..+...+..++..+. .+.++||||++...++.|+..|...|+++..+||+|++.+|..+++.|++|...||||| ++++
T Consensus 327 ~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~ 406 (501)
T PHA02558 327 TKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceec
Confidence 122233333333332 34689999999999999999999999999999999999999999999999999999998 8999
Q ss_pred ccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCcc
Q 002040 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (976)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g 812 (976)
+|+|+|++++||++.++.+...|+|++||++|.+..+
T Consensus 407 eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 407 TGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred cccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 9999999999999999999999999999999986544
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.5e-35 Score=349.34 Aligned_cols=325 Identities=20% Similarity=0.250 Sum_probs=243.7
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.+|+ .|+++|..+++.++.|+ |+.+.||+|||++|++|++..... |+.|+||+||+.||.|.+.++..+
T Consensus 74 ~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l 142 (790)
T PRK09200 74 VLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQV 142 (790)
T ss_pred HhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 3676 69999999999998876 999999999999999999866553 678999999999999999999999
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcC---CcccccCCceEEEecCccccc-ccC-----
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG----- 633 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~---~~~~~l~~~~~vVlDEah~~~-~~~----- 633 (976)
+..+|+.+.+++||.+...+... ..+++|+||||+.| .++|..+- .....+..+.++||||||.|+ +..
T Consensus 143 ~~~lGl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpli 221 (790)
T PRK09200 143 YEFLGLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLI 221 (790)
T ss_pred HhhcCCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCcee
Confidence 99999999999999984333333 34699999999999 56554421 111346788999999999873 100
Q ss_pred ----------CchHHHHHHHhcCCC-------------------------------------------------------
Q 002040 634 ----------FEPQITRIVQNIRPD------------------------------------------------------- 648 (976)
Q Consensus 634 ----------f~~~i~~il~~~~~~------------------------------------------------------- 648 (976)
+...+..++..+...
T Consensus 222 isg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~ 301 (790)
T PRK09200 222 ISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKR 301 (790)
T ss_pred eeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhc
Confidence 000111111111000
Q ss_pred --------------------------------------------------------------CcEEEEeccCcHHHHHHH
Q 002040 649 --------------------------------------------------------------RQTVLFSATFPRQVEILA 666 (976)
Q Consensus 649 --------------------------------------------------------------~q~i~~SAT~~~~~~~l~ 666 (976)
..+.+||+|....-..+
T Consensus 302 d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~- 380 (790)
T PRK09200 302 DVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF- 380 (790)
T ss_pred CCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH-
Confidence 12456666654433333
Q ss_pred HHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceecc
Q 002040 667 RKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (976)
Q Consensus 667 ~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lh 745 (976)
...++-.+...+...+....... ...+.....|+..|+..+.... ...++||||+|+..++.|+..|...|+++..+|
T Consensus 381 ~~~Y~l~v~~IPt~kp~~r~d~~-~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~ 459 (790)
T PRK09200 381 FEVYNMEVVQIPTNRPIIRIDYP-DKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLN 459 (790)
T ss_pred HHHhCCcEEECCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEec
Confidence 23333333322222222222221 1234455778888988887643 456999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCccEEEecCcccccCCC---CCCc-----EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEE
Q 002040 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV---KELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (976)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi---~~v~-----~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~ 817 (976)
|.+.+.++..+...+..| .|||||++++||+|| ++|. +||+|++|.+...|+|++||+||.|.+|.+++|
T Consensus 460 ~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~ 537 (790)
T PRK09200 460 AKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFF 537 (790)
T ss_pred CCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEE
Confidence 999998888888777766 699999999999999 6898 999999999999999999999999999999999
Q ss_pred ecCCCcC
Q 002040 818 ISEEDAK 824 (976)
Q Consensus 818 ~~~~d~~ 824 (976)
++..|..
T Consensus 538 is~eD~l 544 (790)
T PRK09200 538 ISLEDDL 544 (790)
T ss_pred EcchHHH
Confidence 9986553
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=6.6e-35 Score=343.49 Aligned_cols=321 Identities=20% Similarity=0.241 Sum_probs=232.0
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcE
Q 002040 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (976)
Q Consensus 491 ~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~ 570 (976)
+|+|.|++..+..++..|+.++||+|||++|++|++.+++. ++.|+||+||+.||.|+++++..++..+|+.
T Consensus 70 rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLs 141 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLT 141 (762)
T ss_pred CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCCc
Confidence 45555555555555558999999999999999998776553 4569999999999999999999999999999
Q ss_pred EEEeeCCCC---hHHHHHHHhcCCeEEEeCchhH-HHHHHhc---CCcccccCCceEEEecCcccccc-cCC--------
Q 002040 571 CVPVYGGSG---VAQQISELKRGTEIVVCTPGRM-IDILCTS---GGKITNLRRVTYLVMDEADRMFD-MGF-------- 634 (976)
Q Consensus 571 ~~~~~gg~~---~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~---~~~~~~l~~~~~vVlDEah~~~~-~~f-------- 634 (976)
+.+++++.. ..........+++|+||||+.| .++|..+ ......+..+.++||||||.|+- ...
T Consensus 142 v~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~ 221 (762)
T TIGR03714 142 VSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGA 221 (762)
T ss_pred EEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCC
Confidence 999887632 2222233345799999999999 5655432 11123467899999999998731 100
Q ss_pred -------chHHHHHHHhcCCC-----------------------------------------------------------
Q 002040 635 -------EPQITRIVQNIRPD----------------------------------------------------------- 648 (976)
Q Consensus 635 -------~~~i~~il~~~~~~----------------------------------------------------------- 648 (976)
...+..++..+...
T Consensus 222 ~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dY 301 (762)
T TIGR03714 222 PRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDY 301 (762)
T ss_pred CccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCce
Confidence 00011111111110
Q ss_pred ----------------------------------------------------------CcEEEEeccCcHHHHHHHHHHc
Q 002040 649 ----------------------------------------------------------RQTVLFSATFPRQVEILARKVL 670 (976)
Q Consensus 649 ----------------------------------------------------------~q~i~~SAT~~~~~~~l~~~~l 670 (976)
.++.+||+|.......+. ..+
T Consensus 302 iV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~-~iY 380 (762)
T TIGR03714 302 VVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFI-ETY 380 (762)
T ss_pred EEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHH-HHh
Confidence 124566666544334443 233
Q ss_pred CCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCC
Q 002040 671 NKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 671 ~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
+-.+...+...+...... ....+.....|+..++..+.... ...++||||+++..++.|+..|...|+++..+||.+.
T Consensus 381 ~l~v~~IPt~kp~~r~d~-~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~ 459 (762)
T TIGR03714 381 SLSVVKIPTNKPIIRIDY-PDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNA 459 (762)
T ss_pred CCCEEEcCCCCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCCh
Confidence 333332222222221111 11344556778998988887653 4569999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCccEEEecCcccccCCCC---------CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecC
Q 002040 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVK---------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 750 ~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~---------~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
+.++..+...|+.| .|+|||++++||+||+ ++.+||+|++|....+ +|++|||||.|.+|.+++|++.
T Consensus 460 ~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~ 536 (762)
T TIGR03714 460 AKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSL 536 (762)
T ss_pred HHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEcc
Confidence 99988888777777 6999999999999999 9999999999998766 9999999999999999999998
Q ss_pred CCcC
Q 002040 821 EDAK 824 (976)
Q Consensus 821 ~d~~ 824 (976)
.|..
T Consensus 537 eD~l 540 (762)
T TIGR03714 537 EDDL 540 (762)
T ss_pred chhh
Confidence 7553
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=7e-35 Score=365.89 Aligned_cols=290 Identities=22% Similarity=0.338 Sum_probs=226.4
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 480 ~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
+.+.......|+++|..+++.++.|++++++||||||||+ |++|++..+.. .++++|||+||++||.|++..
T Consensus 69 ~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~~~ 140 (1171)
T TIGR01054 69 EFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVAEK 140 (1171)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHHHH
Confidence 3444434457999999999999999999999999999997 66777666543 268899999999999999999
Q ss_pred HHHHHhhcCcEEE---EeeCCCChHHH---HHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-
Q 002040 560 IRKFAKVMGVRCV---PVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD- 631 (976)
Q Consensus 560 ~~~~~~~~~~~~~---~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~- 631 (976)
+..++..+++.+. +++||.+..++ +..+.. +++|||+||++|.+.+... .. ++.+|||||||+|++
T Consensus 141 l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l-----~~-~~~~iVvDEaD~~L~~ 214 (1171)
T TIGR01054 141 ISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL-----GP-KFDFIFVDDVDALLKA 214 (1171)
T ss_pred HHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh-----cC-CCCEEEEeChHhhhhc
Confidence 9999988776654 46788877654 334444 4899999999998877531 11 799999999999998
Q ss_pred ----------cCCchH-HHHHH----------------------HhcCCCCc--EEEEecc-CcHHHHHHHHHHcCCCeE
Q 002040 632 ----------MGFEPQ-ITRIV----------------------QNIRPDRQ--TVLFSAT-FPRQVEILARKVLNKPVE 675 (976)
Q Consensus 632 ----------~~f~~~-i~~il----------------------~~~~~~~q--~i~~SAT-~~~~~~~l~~~~l~~~~~ 675 (976)
+||... +..++ ..++..+| +++|||| +|..+. ..++..+..
T Consensus 215 ~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~---~~l~r~ll~ 291 (1171)
T TIGR01054 215 SKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR---AKLFRELLG 291 (1171)
T ss_pred cccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH---HHHcccccc
Confidence 788774 44443 23444455 5779999 565433 234556666
Q ss_pred EEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCH---HHHHHHHHHHHHCCCCceeccCCCCHHH
Q 002040 676 IQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ---EKCDALFRDLLKHGYPCLSLHGAKDQTD 752 (976)
Q Consensus 676 i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~---~~~~~l~~~L~~~~~~~~~lhg~~~~~~ 752 (976)
+.++.......++.+.+..... +...|..+|... +.++||||++. +.|+.|+..|...|+.+..+||++++
T Consensus 292 ~~v~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~-- 365 (1171)
T TIGR01054 292 FEVGGGSDTLRNVVDVYVEDED--LKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK-- 365 (1171)
T ss_pred eEecCccccccceEEEEEeccc--HHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH--
Confidence 6776665556677777654432 245566666554 35799999999 99999999999999999999999973
Q ss_pred HHHHHHHhccCCccEEEe----cCcccccCCCCC-CcEEEEeCCCCC
Q 002040 753 RESTISDFKSNVCNLLIA----TSVAARGLDVKE-LELVINFDAPNH 794 (976)
Q Consensus 753 R~~~~~~F~~g~~~vLVa----T~v~~~GlDi~~-v~~VI~~d~p~s 794 (976)
.+++.|++|+++|||| |++++||||||+ |++|||||+|..
T Consensus 366 --~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 366 --EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred --HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCCE
Confidence 7899999999999999 589999999999 899999999973
No 70
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.2e-34 Score=336.76 Aligned_cols=323 Identities=22% Similarity=0.288 Sum_probs=246.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|+++|..+++.+..|+ |+.++||+|||++|++|++..... |..|+||+||..||.|.++++..++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 564 48899999888887776 999999999999999999644432 4469999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCC---cccccCCceEEEecCcccccc-c-------
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMFD-M------- 632 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~---~~~~l~~~~~vVlDEah~~~~-~------- 632 (976)
..+|+.+.+++||.+.......+ .++|+|+||++| +++|..+.. ....+..+.++||||+|+|+- .
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLii 199 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLII 199 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhh
Confidence 99999999999998876654443 489999999999 888865421 123578899999999998731 0
Q ss_pred -C------------------------Cc------------h---HHHHH------------------HHhc------CCC
Q 002040 633 -G------------------------FE------------P---QITRI------------------VQNI------RPD 648 (976)
Q Consensus 633 -~------------------------f~------------~---~i~~i------------------l~~~------~~~ 648 (976)
| |. . .+..+ ...+ ..+
T Consensus 200 sg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d 279 (745)
T TIGR00963 200 SGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKD 279 (745)
T ss_pred cCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 0 00 0 00000 0000 000
Q ss_pred -------------------------------------------------------------CcEEEEeccCcHHHHHHHH
Q 002040 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (976)
Q Consensus 649 -------------------------------------------------------------~q~i~~SAT~~~~~~~l~~ 667 (976)
..+.+||+|.......+..
T Consensus 280 ~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 359 (745)
T TIGR00963 280 VDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEK 359 (745)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHH
Confidence 2356777777655444433
Q ss_pred HHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccC
Q 002040 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (976)
Q Consensus 668 ~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg 746 (976)
.++-++...+...+....... ...+.....|+..++..+.... .+.++||||+++..++.|+..|...|+++..+||
T Consensus 360 -iY~l~vv~IPtnkp~~R~d~~-d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna 437 (745)
T TIGR00963 360 -IYNLEVVVVPTNRPVIRKDLS-DLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNA 437 (745)
T ss_pred -HhCCCEEEeCCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeC
Confidence 334444333333332222211 2234556678888887775554 3559999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC-------CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 002040 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE-------LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~-------v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
. +..|+..+..|..+...|+|||++|+||+||+. ..+||+++.|.|...|.|++||+||.|.+|.+..|++
T Consensus 438 ~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls 515 (745)
T TIGR00963 438 K--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLS 515 (745)
T ss_pred C--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEe
Confidence 8 889999999999999999999999999999998 5699999999999999999999999999999999999
Q ss_pred CCCcC
Q 002040 820 EEDAK 824 (976)
Q Consensus 820 ~~d~~ 824 (976)
..|.-
T Consensus 516 ~eD~l 520 (745)
T TIGR00963 516 LEDNL 520 (745)
T ss_pred ccHHH
Confidence 87654
No 71
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2e-34 Score=314.23 Aligned_cols=338 Identities=21% Similarity=0.290 Sum_probs=272.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
....+.++.++...|+..|+..++|+|.-++.. ++.|.|.+++++|+||||++.-++-+..++. .|.+.|+|
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 456788999999999999999999999999987 6799999999999999999988887777664 36789999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH----HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEE
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI----SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~----~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vV 622 (976)
||..+||+|-|..|+.-...+|+.+.+-+|-.-+...- ......++|||+|++.+-.+|... ..+.+++.||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg----~~lgdiGtVV 343 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG----KDLGDIGTVV 343 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC----CcccccceEE
Confidence 99999999999999998888999998877765333221 112235799999999986666543 4788999999
Q ss_pred ecCcccccccCCchH---HHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcch
Q 002040 623 MDEADRMFDMGFEPQ---ITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD 699 (976)
Q Consensus 623 lDEah~~~~~~f~~~---i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~ 699 (976)
|||+|.+-+...++. +..-+..+-+..|+|++|||..+.. .++..+...++.+. .++++ --.+.+.......
T Consensus 344 IDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~-elA~~l~a~lV~y~--~RPVp--lErHlvf~~~e~e 418 (830)
T COG1202 344 IDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPE-ELAKKLGAKLVLYD--ERPVP--LERHLVFARNESE 418 (830)
T ss_pred eeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChH-HHHHHhCCeeEeec--CCCCC--hhHeeeeecCchH
Confidence 999998776554444 4445566678999999999987654 47777766665443 22222 2234455556788
Q ss_pred HHHHHHHHHHhhh-------cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC
Q 002040 700 RFLRLLELLGEWY-------EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (976)
Q Consensus 700 k~~~l~~~l~~~~-------~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~ 772 (976)
|+..+..+...-. -.|++|||++|+..|..|+.+|...|+.+.++|++|+..+|..+...|.++.+.++|+|-
T Consensus 419 K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTA 498 (830)
T COG1202 419 KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTA 498 (830)
T ss_pred HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehh
Confidence 8877777665432 247999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCCcEEE----EeCCCCCHHHHHHHhcccCCCCC--ccEEEEEecCC
Q 002040 773 VAARGLDVKELELVI----NFDAPNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (976)
Q Consensus 773 v~~~GlDi~~v~~VI----~~d~p~s~~~y~Qr~GR~gR~g~--~g~~~~~~~~~ 821 (976)
+++.|+|+|.-.+|+ +-.-+.++..|.|++|||||.+- .|.+|+++-+.
T Consensus 499 AL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 499 ALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 999999999755443 23446689999999999999764 69999998764
No 72
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3.7e-33 Score=347.89 Aligned_cols=323 Identities=23% Similarity=0.312 Sum_probs=241.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
...|+++|.+++..++.+ ++|+++|||+|||++++++++..+.. .+.++||||||++|+.||...+..++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 346899999999988877 99999999999999999998887742 2568999999999999999999998755
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
.+..++.++|+...... ..+..+++|+|+||+.|...+... ...+..+++|||||||++........+...+....
T Consensus 85 ~~~~v~~~~g~~~~~~r-~~~~~~~~iiv~T~~~l~~~l~~~---~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~ 160 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKR-AELWEKAKVIVATPQVIENDLIAG---RISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDA 160 (773)
T ss_pred CCceEEEEeCCCCHHHH-HHHHhCCCEEEECHHHHHHHHHcC---CCChhhCcEEEEECCccccccccHHHHHHHHHhcC
Confidence 45577778887766543 344456899999999998776543 24677899999999998765433333444444555
Q ss_pred CCCcEEEEeccCcHHH---HHHHHHHcCCCeEE--------------------EeCCc----------------------
Q 002040 647 PDRQTVLFSATFPRQV---EILARKVLNKPVEI--------------------QVGGR---------------------- 681 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~---~~l~~~~l~~~~~i--------------------~~~~~---------------------- 681 (976)
+..++++||||+.... ..+...+....+.+ .+...
T Consensus 161 ~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~ 240 (773)
T PRK13766 161 KNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLK 240 (773)
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999974221 11111111000000 00000
Q ss_pred --ccc--cC-------------Cce-------------------------------------------------------
Q 002040 682 --SVV--NK-------------DIT------------------------------------------------------- 689 (976)
Q Consensus 682 --~~~--~~-------------~i~------------------------------------------------------- 689 (976)
... .. .+.
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~ 320 (773)
T PRK13766 241 ELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGS 320 (773)
T ss_pred HCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCc
Confidence 000 00 000
Q ss_pred -----------------EEEEecCcchHHHHHHHHHHhhh---cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCC--
Q 002040 690 -----------------QLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA-- 747 (976)
Q Consensus 690 -----------------q~~~~~~~~~k~~~l~~~l~~~~---~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~-- 747 (976)
....+.....|+..|..+|.... ..+++||||++...|..|+.+|...++.+..+||.
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~ 400 (773)
T PRK13766 321 KASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQAS 400 (773)
T ss_pred HHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccc
Confidence 00001122345666666666543 45799999999999999999999999999999986
Q ss_pred ------CCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCC
Q 002040 748 ------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (976)
Q Consensus 748 ------~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~ 821 (976)
|++.+|..++..|++|.++|||||+++++|+|+|.+++||+||+|+++..|+||+||+||.| .|.+|+|++..
T Consensus 401 ~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~ 479 (773)
T PRK13766 401 KDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKG 479 (773)
T ss_pred ccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999987 58899888765
Q ss_pred C
Q 002040 822 D 822 (976)
Q Consensus 822 d 822 (976)
.
T Consensus 480 t 480 (773)
T PRK13766 480 T 480 (773)
T ss_pred C
Confidence 3
No 73
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.2e-33 Score=348.03 Aligned_cols=302 Identities=23% Similarity=0.297 Sum_probs=213.3
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC----HHHHHHHHHHHHHHHhhc
Q 002040 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT----RELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 492 ~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt----r~La~Q~~~~~~~~~~~~ 567 (976)
.+..+.+..|..++.+||+|+||||||++ +|.+..... .+....+++..|. ++||.++..++..- +
T Consensus 77 ~~r~~Il~ai~~~~VviI~GeTGSGKTTq--lPq~lle~g-----~g~~g~I~~TQPRRlAArsLA~RVA~El~~~---l 146 (1294)
T PRK11131 77 QKKQDILEAIRDHQVVIVAGETGSGKTTQ--LPKICLELG-----RGVKGLIGHTQPRRLAARTVANRIAEELETE---L 146 (1294)
T ss_pred HHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHcC-----CCCCCceeeCCCcHHHHHHHHHHHHHHHhhh---h
Confidence 34456667777788889999999999994 664433221 1112234455575 46666666655531 2
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~ 646 (976)
|..+.+-+... .....++.|+|||||+|++.+... ..|..+++||||||| ++++++|...+..-+...+
T Consensus 147 G~~VGY~vrf~------~~~s~~t~I~v~TpG~LL~~l~~d----~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~r 216 (1294)
T PRK11131 147 GGCVGYKVRFN------DQVSDNTMVKLMTDGILLAEIQQD----RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRR 216 (1294)
T ss_pred cceeceeecCc------cccCCCCCEEEEChHHHHHHHhcC----CccccCcEEEecCccccccccchHHHHHHHhhhcC
Confidence 32222211111 122457899999999999998653 358999999999999 7999998765433333345
Q ss_pred CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc------chHHHHHHHHHHhh--hcCCcEE
Q 002040 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEW--YEKGKIL 718 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~------~~k~~~l~~~l~~~--~~~~kvL 718 (976)
++.|+|+||||++.. .+...|.+.|+ +.+.+...+ +.+.+..... .+.+..++..+... ...|.+|
T Consensus 217 pdlKvILmSATid~e--~fs~~F~~apv-I~V~Gr~~p---Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 217 PDLKVIITSATIDPE--RFSRHFNNAPI-IEVSGRTYP---VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred CCceEEEeeCCCCHH--HHHHHcCCCCE-EEEcCcccc---ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 788999999999753 45555555554 566555433 3333332221 12333444433322 2457899
Q ss_pred EEecCHHHHHHHHHHHHHCCCC---ceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC----
Q 002040 719 IFVHSQEKCDALFRDLLKHGYP---CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---- 791 (976)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~~~~---~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~---- 791 (976)
|||++..+++.++..|...++. +..+||+|++.+|..+++. .|..+|||||+++++|||||+|.+||+++.
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999988765 6789999999999999886 478999999999999999999999999862
Q ss_pred --------------CCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 792 --------------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 792 --------------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
|.|.++|+||+|||||. .+|.||.||++.+
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d 412 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDD 412 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHH
Confidence 34568999999999999 5999999999754
No 74
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-33 Score=295.42 Aligned_cols=334 Identities=21% Similarity=0.351 Sum_probs=248.7
Q ss_pred HHHHHHH-cCCCCC-cHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHH
Q 002040 478 IMETIRK-LNYEKP-MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (976)
Q Consensus 478 l~~~l~~-~~~~~p-~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~ 554 (976)
+..+|++ ||+.++ ++.|.+|+..+..+ +||.|++|||+||+++|.||+|.+ +.+.||+.|..+|+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 4455654 676654 79999999998865 699999999999999999999865 348899999999987
Q ss_pred HHHHHHHHHHhhcCcEEEEeeCCCChHHH---H---HHHhcCCeEEEeCchhH-----HHHHHhcCCcccccCCceEEEe
Q 002040 555 QIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---I---SELKRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 555 Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~---~~l~~~~~Iiv~Tp~~L-----~~~l~~~~~~~~~l~~~~~vVl 623 (976)
.....+.+ +.+.+..+....+..+. + ...+....|++.||+.- ..+|.. +.+-.-+.||||
T Consensus 76 DQiDHL~~----LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~----L~~r~~L~Y~vV 147 (641)
T KOG0352|consen 76 DQIDHLKR----LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG----LANRDVLRYIVV 147 (641)
T ss_pred HHHHHHHh----cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH----HhhhceeeeEEe
Confidence 66666665 34445444444433332 2 23344679999999873 333322 123345789999
Q ss_pred cCcccccccC--CchHHHHHH--HhcCCCCcEEEEeccCcHHHHHH--HHHHcCCCeEEEeCCcccccCCceEEEEe-cC
Q 002040 624 DEADRMFDMG--FEPQITRIV--QNIRPDRQTVLFSATFPRQVEIL--ARKVLNKPVEIQVGGRSVVNKDITQLVEV-RP 696 (976)
Q Consensus 624 DEah~~~~~~--f~~~i~~il--~~~~~~~q~i~~SAT~~~~~~~l--~~~~l~~~~~i~~~~~~~~~~~i~q~~~~-~~ 696 (976)
||||+..+|| |.+.+..+- ...-+...-|.+|||.++.+..- +...+.+|+.+.-. +....++...+.+ ..
T Consensus 148 DEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkT--P~FR~NLFYD~~~K~~ 225 (641)
T KOG0352|consen 148 DEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKT--PTFRDNLFYDNHMKSF 225 (641)
T ss_pred chhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccC--cchhhhhhHHHHHHHH
Confidence 9999999997 888887663 33446677899999999988654 34456777654321 1111111100000 00
Q ss_pred cchHHHHHHHHHHhhhc------------CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCC
Q 002040 697 ESDRFLRLLELLGEWYE------------KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV 764 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~~------------~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~ 764 (976)
-.+-+..|..+....+. .|-.||||.|+..|+.++-.|...|+++..+|.++...+|..+-+.|++|+
T Consensus 226 I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~ 305 (641)
T KOG0352|consen 226 ITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE 305 (641)
T ss_pred hhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC
Confidence 11222333333222211 246799999999999999999999999999999999999999999999999
Q ss_pred ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHH
Q 002040 765 CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKA 832 (976)
Q Consensus 765 ~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~ 832 (976)
+.||+||..+++|+|-|+|.+||++++|.|++.|.|-.||+||.|...+|.+||+.+|...+..|+..
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999988777766653
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=330.53 Aligned_cols=332 Identities=22% Similarity=0.266 Sum_probs=247.6
Q ss_pred CCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH
Q 002040 473 GLTSKIMETIRKLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (976)
Q Consensus 473 ~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il-~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~ 551 (976)
.+...+...+...++..++|.|+.++...+ .+.|+|+++|||||||+++++.|++.+.+. +.++|+|||+++
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 356677777788888788888888887655 569999999999999999999999998864 567999999999
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc
Q 002040 552 LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 552 La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
||.+.+.+|+ .+..+|++|...+|+...... ...+++|||+||+.+-.++.+... .+..+++|||||+|.+.+
T Consensus 88 La~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~---~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 88 LAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS---WIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc---hhhcccEEEEeeeeecCC
Confidence 9999999999 456789999999998864431 224599999999999777665432 566899999999998877
Q ss_pred cCCchHHHHHHHhc---CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcc-cccCCceEEEEecCcch------H-
Q 002040 632 MGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESD------R- 700 (976)
Q Consensus 632 ~~f~~~i~~il~~~---~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~-~~~~~i~q~~~~~~~~~------k- 700 (976)
...++.+..|+... ....|+|++|||+|+..+ ++...-.+++.......+ .......+.+....... .
T Consensus 161 ~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e-vA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~ 239 (766)
T COG1204 161 RTRGPVLESIVARMRRLNELIRIVGLSATLPNAEE-VADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLID 239 (766)
T ss_pred cccCceehhHHHHHHhhCcceEEEEEeeecCCHHH-HHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccch
Confidence 75666666665544 445799999999987644 555554444411111111 11112223333222222 1
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC-------------------------------------CCCcee
Q 002040 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLS 743 (976)
Q Consensus 701 ~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~ 743 (976)
...+...+.....++++||||+++..+...+..|... -..+..
T Consensus 240 ~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~Gvaf 319 (766)
T COG1204 240 NLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAF 319 (766)
T ss_pred HHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccc
Confidence 2223333333345779999999999999888888731 124678
Q ss_pred ccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEE----EeC-----CCCCHHHHHHHhcccCCCCC--cc
Q 002040 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----NFD-----APNHYEDYVHRVGRTGRAGR--KG 812 (976)
Q Consensus 744 lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI----~~d-----~p~s~~~y~Qr~GR~gR~g~--~g 812 (976)
+|++++..+|..+...|+.|.++|||||+.++.|+|+|.-.+|| .|+ .+.+..+|+|++|||||.|- .|
T Consensus 320 HhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G 399 (766)
T COG1204 320 HHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYG 399 (766)
T ss_pred cccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCC
Confidence 99999999999999999999999999999999999999877777 377 56678899999999999875 46
Q ss_pred EEEEEec
Q 002040 813 CAITFIS 819 (976)
Q Consensus 813 ~~~~~~~ 819 (976)
.++++.+
T Consensus 400 ~~~i~~~ 406 (766)
T COG1204 400 EAIILAT 406 (766)
T ss_pred cEEEEec
Confidence 6666663
No 76
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.8e-33 Score=343.47 Aligned_cols=303 Identities=24% Similarity=0.307 Sum_probs=219.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEe
Q 002040 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (976)
Q Consensus 495 ~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 574 (976)
.+.+..|..++.+||+|+||||||++ +|.+..-.. .+....++++.|.|..|..+...+ +..+|..+...
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~-----~~~~~~I~~tQPRRlAA~svA~Rv---A~elg~~lG~~ 142 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELG-----RGSHGLIGHTQPRRLAARTVAQRI---AEELGTPLGEK 142 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcC-----CCCCceEecCCccHHHHHHHHHHH---HHHhCCCcceE
Confidence 35666677778889999999999995 454432211 112235666779988877665444 44456666666
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcCCCCcEEE
Q 002040 575 YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVL 653 (976)
Q Consensus 575 ~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~~~~q~i~ 653 (976)
+|+...... ....++.|+|||+|+|+..+... ..|..+++||||||| ++++.+|...+..-+...+++.|+|+
T Consensus 143 VGY~vR~~~--~~s~~T~I~~~TdGiLLr~l~~d----~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIl 216 (1283)
T TIGR01967 143 VGYKVRFHD--QVSSNTLVKLMTDGILLAETQQD----RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIII 216 (1283)
T ss_pred EeeEEcCCc--ccCCCceeeeccccHHHHHhhhC----cccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEE
Confidence 665322221 23456899999999999988654 358899999999999 79999988764443444567899999
Q ss_pred EeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc------chHHHHHHHHHHhhh--cCCcEEEEecCHH
Q 002040 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE------SDRFLRLLELLGEWY--EKGKILIFVHSQE 725 (976)
Q Consensus 654 ~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~------~~k~~~l~~~l~~~~--~~~kvLIF~~s~~ 725 (976)
||||++. ..++..|...|+ +.+.+...+ +...+..... ..+...++..+.... ..|.+||||++..
T Consensus 217 mSATld~--~~fa~~F~~apv-I~V~Gr~~P---Vev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~ 290 (1283)
T TIGR01967 217 TSATIDP--ERFSRHFNNAPI-IEVSGRTYP---VEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGER 290 (1283)
T ss_pred EeCCcCH--HHHHHHhcCCCE-EEECCCccc---ceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHH
Confidence 9999975 345555544554 556555443 2222221111 123444444444332 4589999999999
Q ss_pred HHHHHHHHHHHCC---CCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC-----------
Q 002040 726 KCDALFRDLLKHG---YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA----------- 791 (976)
Q Consensus 726 ~~~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~----------- 791 (976)
++..++..|...+ +.+..+||.|++.++..++..+ +..+|||||+++++|||||+|.+||+++.
T Consensus 291 EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~ 368 (1283)
T TIGR01967 291 EIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTK 368 (1283)
T ss_pred HHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccC
Confidence 9999999998864 4588999999999999997654 34789999999999999999999999884
Q ss_pred -------CCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 792 -------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 792 -------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
|.|.++|+||+|||||.| +|.||.||++.+
T Consensus 369 ~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~ 405 (1283)
T TIGR01967 369 VQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEED 405 (1283)
T ss_pred ccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHH
Confidence 346689999999999998 999999998654
No 77
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=6.4e-33 Score=334.61 Aligned_cols=332 Identities=22% Similarity=0.340 Sum_probs=269.8
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 481 ~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
....+|+..++|-|.++|..++.|+|+++.+|||.||+++|.+|++-. ++.+|||.|..+|..-+ +
T Consensus 256 l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQ---v 321 (941)
T KOG0351|consen 256 LKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQ---V 321 (941)
T ss_pred HHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHH---H
Confidence 344699999999999999999999999999999999999999998733 45889999999997644 4
Q ss_pred HHHHhhcCcEEEEeeCCCChHHHH---HHHhcC---CeEEEeCchhHHHHHHhcCCcccccCC---ceEEEecCcccccc
Q 002040 561 RKFAKVMGVRCVPVYGGSGVAQQI---SELKRG---TEIVVCTPGRMIDILCTSGGKITNLRR---VTYLVMDEADRMFD 631 (976)
Q Consensus 561 ~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~~---~~Iiv~Tp~~L~~~l~~~~~~~~~l~~---~~~vVlDEah~~~~ 631 (976)
..+ ...++...++.++....++. ..+..+ ++|++.||+.+...-... .....|.. +.++||||||+...
T Consensus 322 ~~L-~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~-~~~~~L~~~~~lal~vIDEAHCVSq 399 (941)
T KOG0351|consen 322 THL-SKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLL-ESLADLYARGLLALFVIDEAHCVSQ 399 (941)
T ss_pred Hhh-hhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchh-hHHHhccCCCeeEEEEecHHHHhhh
Confidence 444 34689999999988876543 344443 699999999875422110 01234445 88999999999999
Q ss_pred cC--CchHHHHHHH--hcCCCCcEEEEeccCcHHHHHHHHHHcC--CCeEEEeCCcccccCCceEEEEecCcchHHHHHH
Q 002040 632 MG--FEPQITRIVQ--NIRPDRQTVLFSATFPRQVEILARKVLN--KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (976)
Q Consensus 632 ~~--f~~~i~~il~--~~~~~~q~i~~SAT~~~~~~~l~~~~l~--~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~ 705 (976)
|| |.+.+..+.. ...+...+|.+|||.+..+..-+...|+ ++.. ....+...++...|...........++
T Consensus 400 WgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~---~~~sfnR~NL~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 400 WGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPEL---FKSSFNRPNLKYEVSPKTDKDALLDIL 476 (941)
T ss_pred hcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcce---ecccCCCCCceEEEEeccCccchHHHH
Confidence 97 8888876543 3334578999999998887665555544 4442 235566667766555555456666777
Q ss_pred HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE
Q 002040 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (976)
Q Consensus 706 ~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~ 785 (976)
..+..+.+.+.+||||.++.+|+.++..|...|+.+..||++|+..+|..+-..|..++++|+|||=++++|||.|+|..
T Consensus 477 ~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ 556 (941)
T KOG0351|consen 477 EESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRF 556 (941)
T ss_pred HHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeE
Confidence 77788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHH
Q 002040 786 VINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (976)
Q Consensus 786 VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 831 (976)
||||..|.+++.|.|-+|||||.|....|++||...|...+..++.
T Consensus 557 ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 557 VIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred EEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999876655544443
No 78
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.4e-32 Score=304.85 Aligned_cols=292 Identities=19% Similarity=0.224 Sum_probs=202.9
Q ss_pred HHHHHHHHHhcCCC--EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc---
Q 002040 493 IQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM--- 567 (976)
Q Consensus 493 ~Q~~~i~~il~g~d--~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~--- 567 (976)
+|.++++.+..+.+ +++++|||||||++|++|++.. +.++++++|+++|+.|+++.+..++..+
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999998842 3357999999999999999999988544
Q ss_pred -CcEEEEeeCCCChH--HHH-----------------HHH-hcCCeEEEeCchhHHHHHHhcCC-----cccccCCceEE
Q 002040 568 -GVRCVPVYGGSGVA--QQI-----------------SEL-KRGTEIVVCTPGRMIDILCTSGG-----KITNLRRVTYL 621 (976)
Q Consensus 568 -~~~~~~~~gg~~~~--~~~-----------------~~l-~~~~~Iiv~Tp~~L~~~l~~~~~-----~~~~l~~~~~v 621 (976)
++.+..+.|..... ... ..+ ...+.|+++||+.|..++..... ....+..+++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 45555555542211 000 011 12568888889888655432110 01125789999
Q ss_pred EecCcccccccC-----CchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHH--cCCCeEEEeCCccc-----------
Q 002040 622 VMDEADRMFDMG-----FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV--LNKPVEIQVGGRSV----------- 683 (976)
Q Consensus 622 VlDEah~~~~~~-----f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~--l~~~~~i~~~~~~~----------- 683 (976)
||||+|.+..++ |......++.......++|++|||+++.+....... ++.++... .+...
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v-~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPI-DGEKYQFPDNPELEAD 228 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeee-cCcccccCCChhhhcc
Confidence 999999865433 222334444444445799999999999877766654 44444322 22200
Q ss_pred --------ccCCceEEEEecCcchHHHH---HHHHHHhhh---cCCcEEEEecCHHHHHHHHHHHHHCC--CCceeccCC
Q 002040 684 --------VNKDITQLVEVRPESDRFLR---LLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHG--YPCLSLHGA 747 (976)
Q Consensus 684 --------~~~~i~q~~~~~~~~~k~~~---l~~~l~~~~---~~~kvLIF~~s~~~~~~l~~~L~~~~--~~~~~lhg~ 747 (976)
+.+.+.+.+.. ....+... ++..+.+.. ..+++||||+++..++.++..|...+ +.+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 00234443333 22233322 333333322 45699999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccC
Q 002040 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG 806 (976)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~g 806 (976)
+++..|..+ +...|||||+++++||||+.+ +|| ++ |.++..|+||+||+|
T Consensus 308 ~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 308 APKKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 999998765 378899999999999999987 666 55 889999999999997
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=316.38 Aligned_cols=320 Identities=24% Similarity=0.300 Sum_probs=227.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
..++.+|.+.+...| |+++||++|||+|||++++..|++|+...+ ..++|+++||+.|+.|....+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 468899999999999 999999999999999999999999988764 368999999999999998777766543
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHHHHHHHhcC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIR 646 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~ 646 (976)
..+....||.........+-...+|+|+||..|.+.|..... ..|+.|.+|||||||+-.... |...+..++....
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~--~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~ 209 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH--DELSDFSLIVFDECHRTSKNHPYNNIMREYLDLKN 209 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc--cccceEEEEEEcccccccccccHHHHHHHHHHhhh
Confidence 455555666333222334555689999999999988865432 237889999999999765433 3334435554444
Q ss_pred CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEe------------------------------------------------
Q 002040 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQV------------------------------------------------ 678 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~------------------------------------------------ 678 (976)
...|+|++|||+...+.....-..+-.+.+.+
T Consensus 210 ~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~ 289 (746)
T KOG0354|consen 210 QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEE 289 (746)
T ss_pred ccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 45599999999865433221111000000000
Q ss_pred -------CC------------cccccCCceEE--------------------EE--------------------------
Q 002040 679 -------GG------------RSVVNKDITQL--------------------VE-------------------------- 693 (976)
Q Consensus 679 -------~~------------~~~~~~~i~q~--------------------~~-------------------------- 693 (976)
.. .......-.+. +.
T Consensus 290 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e 369 (746)
T KOG0354|consen 290 GLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELE 369 (746)
T ss_pred CccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhc
Confidence 00 00000000000 00
Q ss_pred ------------------ec--CcchHHHHHHHHHHhhhc---CCcEEEEecCHHHHHHHHHHHHHC---CCCceecc--
Q 002040 694 ------------------VR--PESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKH---GYPCLSLH-- 745 (976)
Q Consensus 694 ------------------~~--~~~~k~~~l~~~l~~~~~---~~kvLIF~~s~~~~~~l~~~L~~~---~~~~~~lh-- 745 (976)
.. ....|+..|.+.|...+. ..++||||.++..|..|..+|... |+....+-
T Consensus 370 ~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq 449 (746)
T KOG0354|consen 370 ARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQ 449 (746)
T ss_pred chhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeec
Confidence 00 012344445555544432 348999999999999999999832 33333333
Q ss_pred ------CCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 002040 746 ------GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 746 ------g~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
.+|++.++..+++.|++|.++|||||+|++.||||+.|++||.||...|+...+||+|| ||+ ..|.|+++++
T Consensus 450 ~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t 527 (746)
T KOG0354|consen 450 GKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTT 527 (746)
T ss_pred cccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEc
Confidence 37999999999999999999999999999999999999999999999999999999999 998 4788998888
Q ss_pred C
Q 002040 820 E 820 (976)
Q Consensus 820 ~ 820 (976)
.
T Consensus 528 ~ 528 (746)
T KOG0354|consen 528 G 528 (746)
T ss_pred c
Confidence 4
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.7e-31 Score=314.94 Aligned_cols=309 Identities=17% Similarity=0.197 Sum_probs=212.5
Q ss_pred CCCcHHHHHHHHHHhc-C--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMS-G--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~-g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
..|+|+|.+++..++. | +..|+++|||+|||++.+..+.. + +..+|||||+..|+.||.++|.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 3589999999999884 3 37899999999999997755543 2 2358999999999999999999987
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC-----cccccCCceEEEecCcccccccCCchHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG-----KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-----~~~~l~~~~~vVlDEah~~~~~~f~~~i~ 639 (976)
......+..++|+.... +.....|+|+|+..+......... ..+.-..|++||+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54455566666653221 112368999999877432111000 011224689999999998753 4555
Q ss_pred HHHHhcCCCCcEEEEeccCcHHHHH--HHHHHcCCCeEEEeCCcccccC----Cce-EEEE-------------------
Q 002040 640 RIVQNIRPDRQTVLFSATFPRQVEI--LARKVLNKPVEIQVGGRSVVNK----DIT-QLVE------------------- 693 (976)
Q Consensus 640 ~il~~~~~~~q~i~~SAT~~~~~~~--l~~~~l~~~~~i~~~~~~~~~~----~i~-q~~~------------------- 693 (976)
.++..+. ....|+|||||...-.. ....+++ |..+...-...... .+. ..+.
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~~LiG-P~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLNFLIG-PKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhhhhcC-CeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 5666653 34579999998643211 1222222 32222211111000 000 0000
Q ss_pred ---ecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccC-CccEE
Q 002040 694 ---VRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNLL 768 (976)
Q Consensus 694 ---~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vL 768 (976)
......|+..+..+|..+. .+.++||||.+...+..++..| .+..|||.+++.+|..+++.|++| .+++|
T Consensus 472 ~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vL 546 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTI 546 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEE
Confidence 1112234444444554332 4569999999999999888877 356799999999999999999865 88999
Q ss_pred EecCcccccCCCCCCcEEEEeCCCC-CHHHHHHHhcccCCCCCccEE-------EEEecCCCc
Q 002040 769 IATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCA-------ITFISEEDA 823 (976)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GR~gR~g~~g~~-------~~~~~~~d~ 823 (976)
|+|+++.+|||+|++++||++++|. |...|+||+||++|.+..|.+ |+|++....
T Consensus 547 v~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 547 FLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred EEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999999999985 999999999999998766554 888887643
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.5e-31 Score=322.79 Aligned_cols=336 Identities=22% Similarity=0.340 Sum_probs=261.6
Q ss_pred CHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHH
Q 002040 475 TSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (976)
Q Consensus 475 ~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~ 554 (976)
...+...|.+.|+..|++||.+|+..+.+|+++||+.+||||||.+|++||+.++...+. .++|+|.||.+||+
T Consensus 56 ~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa~ 129 (851)
T COG1205 56 DESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALAN 129 (851)
T ss_pred hhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhHh
Confidence 344577888899999999999999999999999999999999999999999999997642 27899999999999
Q ss_pred HHHHHHHHHHhhcC--cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHh-cCCcccccCCceEEEecCcccccc
Q 002040 555 QIHSDIRKFAKVMG--VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCT-SGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 555 Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~-~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
...+.|.++...++ +.+....|.+...+....+...++||++||.+|-.++.. .......+.++.||||||+|..-
T Consensus 130 DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr- 208 (851)
T COG1205 130 DQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR- 208 (851)
T ss_pred hHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc-
Confidence 99999999999888 777777777777666566778899999999999764443 33334557789999999999532
Q ss_pred cCCchHHHHHH-------HhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecC--------
Q 002040 632 MGFEPQITRIV-------QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-------- 696 (976)
Q Consensus 632 ~~f~~~i~~il-------~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~-------- 696 (976)
-.|+..+..++ ...+...|+|++|||+....+ ++..+++......+.....+....... ...+
T Consensus 209 Gv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~~~f~~~v~~~g~~~~~~~~~-~~~p~~~~~~~~ 286 (851)
T COG1205 209 GVQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE-FAEELFGRDFEVPVDEDGSPRGLRYFV-RREPPIRELAES 286 (851)
T ss_pred ccchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH-HHHHhcCCcceeeccCCCCCCCceEEE-EeCCcchhhhhh
Confidence 22444443333 333457899999999876544 666777666655444444443333322 2222
Q ss_pred -cchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHH----HHHHHCC----CCceeccCCCCHHHHHHHHHHhccCCcc
Q 002040 697 -ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALF----RDLLKHG----YPCLSLHGAKDQTDRESTISDFKSNVCN 766 (976)
Q Consensus 697 -~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~----~~L~~~~----~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 766 (976)
...+...+..++.... .+-++|+|+.+...++.+. ..+...+ ..+..++|+|...+|..+...|+.|+..
T Consensus 287 ~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~ 366 (851)
T COG1205 287 IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELL 366 (851)
T ss_pred cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCcc
Confidence 1133333333333333 3459999999999999987 4444445 5688999999999999999999999999
Q ss_pred EEEecCcccccCCCCCCcEEEEeCCCC-CHHHHHHHhcccCCCCCccEEEEEec
Q 002040 767 LLIATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 767 vLVaT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
++|+|++++.|+||-++..||+++.|. +...++|+.||+||.++.+..++++.
T Consensus 367 ~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 367 GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred EEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeC
Confidence 999999999999999999999999999 89999999999999997776666654
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=2.7e-30 Score=315.24 Aligned_cols=332 Identities=15% Similarity=0.167 Sum_probs=219.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
.|.|||..++..++.. ..+|++.++|.|||+.+++.+...+... ....+|||||+ .|+.||..++.+.+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~kF-- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRRF-- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHHh--
Confidence 5889999998887654 4799999999999999877666554432 23469999997 79999999987653
Q ss_pred cCcEEEEeeCCCChHHHHH--HHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHHHHHHH
Q 002040 567 MGVRCVPVYGGSGVAQQIS--ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQ 643 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~--~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i~~il~ 643 (976)
++.+.++.++........ ......+++|||++.|...-... ....-..|++|||||||++-+.. ........+.
T Consensus 223 -~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~--~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~ 299 (956)
T PRK04914 223 -NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRL--EQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVE 299 (956)
T ss_pred -CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHH--HHHhhcCCCEEEEechhhhccCCCCcCHHHHHHH
Confidence 455444333221110000 01113689999998775411000 00112368999999999986321 1111122333
Q ss_pred hc-CCCCcEEEEeccCcHH-H------------------HHH-------------HH-----------------HHcCC-
Q 002040 644 NI-RPDRQTVLFSATFPRQ-V------------------EIL-------------AR-----------------KVLNK- 672 (976)
Q Consensus 644 ~~-~~~~q~i~~SAT~~~~-~------------------~~l-------------~~-----------------~~l~~- 672 (976)
.+ .....+|++||||-.. . ..+ +. .++..
T Consensus 300 ~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 300 QLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred HHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 33 2345789999997320 0 000 00 00000
Q ss_pred ----------------------------------CeEEEeCC---cccccCCceEEEEe---------------------
Q 002040 673 ----------------------------------PVEIQVGG---RSVVNKDITQLVEV--------------------- 694 (976)
Q Consensus 673 ----------------------------------~~~i~~~~---~~~~~~~i~q~~~~--------------------- 694 (976)
.+.+.-.. ..++ ....+.+.+
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp-~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFP-KRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCC-cCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 00000000 0000 001111111
Q ss_pred ----------------cCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHH-HHCCCCceeccCCCCHHHHHHHH
Q 002040 695 ----------------RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL-LKHGYPCLSLHGAKDQTDRESTI 757 (976)
Q Consensus 695 ----------------~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L-~~~~~~~~~lhg~~~~~~R~~~~ 757 (976)
...+.|+..|+.+|... ...++||||+++..+..|+..| ...|+.+..|||+|++.+|..++
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~-~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~ 537 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH-RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAA 537 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHH
Confidence 11233555666666543 3579999999999999999999 46799999999999999999999
Q ss_pred HHhccC--CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHh
Q 002040 758 SDFKSN--VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (976)
Q Consensus 758 ~~F~~g--~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (976)
..|+++ .+.|||||+++++|+|++.+++|||||+||||..|+||+||+||.|+++.+.+++..........|...+.
T Consensus 538 ~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 538 AYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred HHHhcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHh
Confidence 999974 69999999999999999999999999999999999999999999999999888876655555555555443
No 83
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.98 E-value=9.6e-31 Score=303.34 Aligned_cols=362 Identities=22% Similarity=0.291 Sum_probs=258.7
Q ss_pred HcCCCCCcHHHHHHHHHHh-cCCCEEEEcCCCCchHHHHHHHHHHHHhcC--CCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ--PPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il-~g~d~i~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
-++|..+..+|..++|.+. ++.|+|||||||||||.+|+|.||+.+..+ +.....++.++++|+|+++||..++..|
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 4778889999999999987 567999999999999999999999998852 2223345789999999999999999999
Q ss_pred HHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhc-CCcccccCCceEEEecCcccccccCCchHHH
Q 002040 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS-GGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (976)
Q Consensus 561 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~-~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~ 639 (976)
.+-+..+|+.|..++|.+.....- + ..++|||+||+.+ |.+.+. .+....+..+.+|||||+|. +....++.+.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te--i-~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHl-Lhd~RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE--I-ADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHL-LHDDRGPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH--H-HhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehh-hcCcccchHH
Confidence 988888999999999988554432 2 3499999999987 444332 22233467799999999994 4555677777
Q ss_pred HHHHhc-------CCCCcEEEEeccCcHHHHHHHHHHcCCC-eEEEeCCcccccCCceEEEEecCcc-----------hH
Q 002040 640 RIVQNI-------RPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPES-----------DR 700 (976)
Q Consensus 640 ~il~~~-------~~~~q~i~~SAT~~~~~~~l~~~~l~~~-~~i~~~~~~~~~~~i~q~~~~~~~~-----------~k 700 (976)
.|+... ....++|++|||+|+-.. ++..+-.+| .-+......+.+..+.+.+.-.... ..
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~eD-vA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~ 338 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYED-VARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVC 338 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHHH-HHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHH
Confidence 776543 345689999999997644 554444432 2233233334444555555433322 11
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC-----------------------CCCceeccCCCCHHHHHHHH
Q 002040 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-----------------------GYPCLSLHGAKDQTDRESTI 757 (976)
Q Consensus 701 ~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~-----------------------~~~~~~lhg~~~~~~R~~~~ 757 (976)
+..+.+.+ ..+.+++|||.++......+..|.+. ...+...|++|.-.+|..+.
T Consensus 339 ~~kv~e~~---~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E 415 (1230)
T KOG0952|consen 339 YDKVVEFL---QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVE 415 (1230)
T ss_pred HHHHHHHH---HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHH
Confidence 22222332 34669999999999888888888653 13467789999999999999
Q ss_pred HHhccCCccEEEecCcccccCCCCCCcEEEE----eCCCC------CHHHHHHHhcccCCC--CCccEEEEEecCCCcCc
Q 002040 758 SDFKSNVCNLLIATSVAARGLDVKELELVIN----FDAPN------HYEDYVHRVGRTGRA--GRKGCAITFISEEDAKY 825 (976)
Q Consensus 758 ~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d~p~------s~~~y~Qr~GR~gR~--g~~g~~~~~~~~~d~~~ 825 (976)
..|..|.++||+||..++.|+|+|.--++|- ||.-. ...+.+|..|||||. +..|.++++.+.+...+
T Consensus 416 ~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~ 495 (1230)
T KOG0952|consen 416 KEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDH 495 (1230)
T ss_pred HHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHH
Confidence 9999999999999999999999997766662 44433 356789999999995 45688887766543333
Q ss_pred hHHHHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 002040 826 SPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (976)
Q Consensus 826 ~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~~ 857 (976)
.+..|......-...+..|++.+.+.+..
T Consensus 496 ---Y~sLl~~~~piES~~~~~L~dnLnAEi~L 524 (1230)
T KOG0952|consen 496 ---YESLLTGQNPIESQLLPCLIDNLNAEISL 524 (1230)
T ss_pred ---HHHHHcCCChhHHHHHHHHHHhhhhheee
Confidence 33333333222234456777777666543
No 84
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.97 E-value=1.5e-30 Score=270.29 Aligned_cols=337 Identities=19% Similarity=0.325 Sum_probs=260.4
Q ss_pred cCCCCHHHHHHHH-HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 471 QTGLTSKIMETIR-KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 471 ~~~l~~~l~~~l~-~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
.|+.+....+.|+ .+.+.+++|.|..+|++.|.|.+++++.|||.||+++|.+|+|.. ...+|||||.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 4556666666666 477889999999999999999999999999999999999999843 4578999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHH---hcCCeEEEeCchhHHHH--HHhcCCcccccCCceEE
Q 002040 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL---KRGTEIVVCTPGRMIDI--LCTSGGKITNLRRVTYL 621 (976)
Q Consensus 550 r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l---~~~~~Iiv~Tp~~L~~~--l~~~~~~~~~l~~~~~v 621 (976)
..|.....-.++. +|+....+...++..+.. ..+ .....+|+.||+.+... +.+.-.+......+.+|
T Consensus 144 islmedqil~lkq----lgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQ----LGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHH----hCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 9998766555555 577776666555544321 111 12358999999987421 11111122345678899
Q ss_pred EecCcccccccC--CchHHH--HHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecC-
Q 002040 622 VMDEADRMFDMG--FEPQIT--RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP- 696 (976)
Q Consensus 622 VlDEah~~~~~~--f~~~i~--~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~- 696 (976)
-|||+|+-..|| |.+.+. .|+..--+...+|+++||.++.+..-+...+.-...+++ ..++..+++...+...+
T Consensus 220 aidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf-~a~fnr~nl~yev~qkp~ 298 (695)
T KOG0353|consen 220 AIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF-RAGFNRPNLKYEVRQKPG 298 (695)
T ss_pred eecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee-ecccCCCCceeEeeeCCC
Confidence 999999998887 777654 455555577889999999998887777766654332222 13344455554443333
Q ss_pred -cchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 697 -ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 697 -~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
..+-+..+..+|..-+.+...||||-++.+|+.++..|..+|+.+..+|..|.+.++.-+-+.|..|++.|+|||-+++
T Consensus 299 n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafg 378 (695)
T KOG0353|consen 299 NEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFG 378 (695)
T ss_pred ChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeec
Confidence 2345556666666656666789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHHHHHH-------------------------------------------HhcccCCCCCcc
Q 002040 776 RGLDVKELELVINFDAPNHYEDYVH-------------------------------------------RVGRTGRAGRKG 812 (976)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~Q-------------------------------------------r~GR~gR~g~~g 812 (976)
+|||-|+|.+||+..+|.++++|.| -.||+||.|.+.
T Consensus 379 mgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a 458 (695)
T KOG0353|consen 379 MGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKA 458 (695)
T ss_pred ccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcc
Confidence 9999999999999999999999999 679999999999
Q ss_pred EEEEEecCCCc
Q 002040 813 CAITFISEEDA 823 (976)
Q Consensus 813 ~~~~~~~~~d~ 823 (976)
.|++||.-.|.
T Consensus 459 ~cilyy~~~di 469 (695)
T KOG0353|consen 459 DCILYYGFADI 469 (695)
T ss_pred cEEEEechHHH
Confidence 99999875443
No 85
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.2e-29 Score=285.25 Aligned_cols=309 Identities=20% Similarity=0.244 Sum_probs=237.1
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEE
Q 002040 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (976)
Q Consensus 492 ~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~ 571 (976)
.+-.+.+..+..++-+||+|+||||||++.-..++..-.. ....+.+.-|.|..|..+ .++++..++..+
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~-------~~g~I~~TQPRRVAavsl---A~RVAeE~~~~l 123 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFA-------SSGKIACTQPRRVAAVSL---AKRVAEEMGCQL 123 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccc-------cCCcEEeecCchHHHHHH---HHHHHHHhCCCc
Confidence 3445777888889999999999999999754444433221 223378888999988855 455555666666
Q ss_pred EEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcCCCCc
Q 002040 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQ 650 (976)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~~~~q 650 (976)
...+|....++.. ....+.|.++|.|.|+..+... ..|..+++||||||| |.+..+....+.+-+...+++.+
T Consensus 124 G~~VGY~IRFed~--ts~~TrikymTDG~LLRE~l~D----p~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~Lk 197 (674)
T KOG0922|consen 124 GEEVGYTIRFEDS--TSKDTRIKYMTDGMLLREILKD----PLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLK 197 (674)
T ss_pred CceeeeEEEeccc--CCCceeEEEecchHHHHHHhcC----CccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCce
Confidence 6666665554442 2235899999999999888654 578999999999999 77777766666666667778899
Q ss_pred EEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhh---hcCCcEEEEecCHHHH
Q 002040 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEW---YEKGKILIFVHSQEKC 727 (976)
Q Consensus 651 ~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~---~~~~kvLIF~~s~~~~ 727 (976)
+|+||||+... .+..|+.+...+.+.++.++. ...+...+..+.+...+..+.+. .+.|.+|||.++++++
T Consensus 198 lIimSATlda~---kfS~yF~~a~i~~i~GR~fPV---ei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEI 271 (674)
T KOG0922|consen 198 LIIMSATLDAE---KFSEYFNNAPILTIPGRTFPV---EILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEI 271 (674)
T ss_pred EEEEeeeecHH---HHHHHhcCCceEeecCCCCce---eEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHH
Confidence 99999999754 566677776667777776653 33344445555555544443333 3678999999999999
Q ss_pred HHHHHHHHHC----C--C--CceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEe--------CC
Q 002040 728 DALFRDLLKH----G--Y--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF--------DA 791 (976)
Q Consensus 728 ~~l~~~L~~~----~--~--~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~--------d~ 791 (976)
+.++..|.+. + . -++++||.++..++..++..-..|..+|+|||+++++.|.|+++.+||+- ++
T Consensus 272 e~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p 351 (674)
T KOG0922|consen 272 EAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNP 351 (674)
T ss_pred HHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeecc
Confidence 9999999875 1 1 25789999999999999999999999999999999999999999999973 33
Q ss_pred ----------CCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 002040 792 ----------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (976)
Q Consensus 792 ----------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~ 823 (976)
|.|.+...||.|||||.| +|.||.+|++.+.
T Consensus 352 ~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 352 RTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAY 392 (674)
T ss_pred ccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHH
Confidence 668889999999999997 9999999997643
No 86
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.4e-30 Score=284.33 Aligned_cols=309 Identities=19% Similarity=0.242 Sum_probs=244.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcE
Q 002040 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (976)
Q Consensus 491 ~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~ 570 (976)
+++-.+.|.+|..++-+||.|+||||||++.-..+...=+ ...|.++-+..|.|..|+.+ ..+++..+|++
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGy------tk~gk~IgcTQPRRVAAmSV---AaRVA~EMgvk 337 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGY------TKGGKKIGCTQPRRVAAMSV---AARVAEEMGVK 337 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhccc------ccCCceEeecCcchHHHHHH---HHHHHHHhCcc
Confidence 4677888999999999999999999999873333332211 12244578888999999855 45566678888
Q ss_pred EEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcCCCC
Q 002040 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDR 649 (976)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~~~~ 649 (976)
...-+|.+..++.+.. ..+-|-++|.|.|+..+... ..|.++++||||||| +-+..+....+..-+..++|+.
T Consensus 338 LG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL~e----pdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdL 411 (902)
T KOG0923|consen 338 LGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFLSE----PDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDL 411 (902)
T ss_pred cccccceEEEeccccC--cceeeeeecchhHHHHHhcc----ccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcc
Confidence 8777888777766433 45789999999999888665 689999999999999 7777777777777778889999
Q ss_pred cEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh---cCCcEEEEecCHHH
Q 002040 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY---EKGKILIFVHSQEK 726 (976)
Q Consensus 650 q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~---~~~kvLIF~~s~~~ 726 (976)
++|+.|||+... -+..|+.+...+.+.++-++ +...+...++.+.+...+..+.+.+ +.|.||||...+..
T Consensus 412 KllIsSAT~DAe---kFS~fFDdapIF~iPGRRyP---Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 412 KLLISSATMDAE---KFSAFFDDAPIFRIPGRRYP---VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eEEeeccccCHH---HHHHhccCCcEEeccCcccc---eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 999999999654 45566666555555555443 3445566677777777666665543 46899999999999
Q ss_pred HHHHHHHHHHC---------CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC------
Q 002040 727 CDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------ 791 (976)
Q Consensus 727 ~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~------ 791 (976)
++.....|... .+-+++||+.++...+..|++.-..|..+|++||++|++.|.|++|.+||+-++
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsy 565 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSY 565 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCc
Confidence 98888877653 356889999999999999999999999999999999999999999999997443
Q ss_pred ------------CCCHHHHHHHhcccCCCCCccEEEEEecCC
Q 002040 792 ------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (976)
Q Consensus 792 ------------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~ 821 (976)
|.|-++..||.||+||+| +|.||.+|+.+
T Consensus 566 nprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 566 NPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 567788899999999998 99999999854
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=8.2e-29 Score=299.31 Aligned_cols=309 Identities=20% Similarity=0.264 Sum_probs=219.7
Q ss_pred CCcHHHHHHHHHHhcC---CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 489 KPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g---~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
.|++.|.+++..+..+ +++++.|+||||||.+|+.++...+.. |.++|||+||++|+.|++..++..
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~-- 213 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRAR-- 213 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHH--
Confidence 5899999999999974 789999999999999998887766543 568999999999999999988875
Q ss_pred hcCcEEEEeeCCCChHHHHH---HHh-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCC-ch--HH
Q 002040 566 VMGVRCVPVYGGSGVAQQIS---ELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EP--QI 638 (976)
Q Consensus 566 ~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f-~~--~i 638 (976)
+|..+..++|+.+..+... .+. ...+|||+|++.+. ..+.++++|||||+|.....+. .+ ..
T Consensus 214 -fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~----------~p~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 214 -FGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF----------LPFKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred -hCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc----------ccccCCCEEEEECCCccccccCcCCCCcH
Confidence 4678899999987765433 233 34799999998762 3567899999999997543321 11 11
Q ss_pred H--HHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccccc-CCceEEEEecCc------chHHHHHHHHHH
Q 002040 639 T--RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPE------SDRFLRLLELLG 709 (976)
Q Consensus 639 ~--~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~-~~i~q~~~~~~~------~~k~~~l~~~l~ 709 (976)
. .++.....+.++|++|||++......+.. +....+.+....... ......+..... ..-...++..+.
T Consensus 283 r~va~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~ 360 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIK 360 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHH
Confidence 1 23444557889999999988665433322 222222222221100 011111111110 001134555565
Q ss_pred hhhcCC-cEEEEecCH------------------------------------------------------------HHHH
Q 002040 710 EWYEKG-KILIFVHSQ------------------------------------------------------------EKCD 728 (976)
Q Consensus 710 ~~~~~~-kvLIF~~s~------------------------------------------------------------~~~~ 728 (976)
+....+ ++|||+|.+ ..++
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e 440 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTE 440 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHH
Confidence 555444 899998752 1345
Q ss_pred HHHHHHHHC--CCCceeccCCCCH--HHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCC--CC--------
Q 002040 729 ALFRDLLKH--GYPCLSLHGAKDQ--TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP--NH-------- 794 (976)
Q Consensus 729 ~l~~~L~~~--~~~~~~lhg~~~~--~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p--~s-------- 794 (976)
.+++.|... ++++..+|+++.+ .+++.++..|.+|+++|||+|+++++|+|+|++++|++++.+ .+
T Consensus 441 ~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~E 520 (679)
T PRK05580 441 RLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASE 520 (679)
T ss_pred HHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHH
Confidence 677777765 7889999999874 578999999999999999999999999999999999766554 22
Q ss_pred --HHHHHHHhcccCCCCCccEEEEEecC
Q 002040 795 --YEDYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 795 --~~~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
...|+|++||+||.+..|.|++....
T Consensus 521 r~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 36789999999999999999876543
No 88
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.2e-28 Score=289.04 Aligned_cols=183 Identities=17% Similarity=0.248 Sum_probs=143.5
Q ss_pred hhhhcCCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHH-----HcCCCCC---cHHHHHHHHHHhcCCC
Q 002040 436 KEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIR-----KLNYEKP---MPIQAQALPVIMSGRD 506 (976)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~i~~-~g~~~p~pi~~~~~~~l~~~l~~~l~-----~~~~~~p---~~~Q~~~i~~il~g~d 506 (976)
+.+..++.+++......+...+ .|..+ .. .-...|++...+...+. ..||..| +|+|.|+||.++.+++
T Consensus 32 ~~~~~lsd~eL~~kt~~~k~~l~~~~~l-d~-~l~eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~g 109 (970)
T PRK12899 32 EKFSSLSDDELRNKTAELKQRYQDGESL-DK-LLPEAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKG 109 (970)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHcCCch-HH-HHHHHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCC
Confidence 4566777777665444443222 22211 11 11356888888887766 6899988 9999999999999999
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 586 (976)
+|+.++||+|||++|++|++..+... ..++||+||++||.|+++++..++..+|+++.+++||.+...+...
T Consensus 110 vIAeaqTGeGKTLAf~LP~l~~aL~g--------~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~ 181 (970)
T PRK12899 110 FITEMQTGEGKTLTAVMPLYLNALTG--------KPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI 181 (970)
T ss_pred eEEEeCCCCChHHHHHHHHHHHHhhc--------CCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH
Confidence 99999999999999999999887642 2389999999999999999999999999999999999999988766
Q ss_pred HhcCCeEEEeCchhH-HHHHHhcCCccc----ccCCceEEEecCccccc
Q 002040 587 LKRGTEIVVCTPGRM-IDILCTSGGKIT----NLRRVTYLVMDEADRMF 630 (976)
Q Consensus 587 l~~~~~Iiv~Tp~~L-~~~l~~~~~~~~----~l~~~~~vVlDEah~~~ 630 (976)
+ +++|+||||++| +++|..+..... -...+.++||||||.|+
T Consensus 182 y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 182 Y--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred c--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 5 499999999999 999876421111 12356899999999874
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=2.3e-28 Score=289.88 Aligned_cols=321 Identities=20% Similarity=0.233 Sum_probs=231.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|. .|++.|..+--++ +..-|+.++||+|||++|++|++..+.. |..|+||+||+.||.|.++++..++
T Consensus 79 lg~-~~ydvQliGg~~L--h~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVL--HEGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHhhhhhh--ccCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 554 3666666555444 4556899999999999999999977653 3468999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCCccccc-----CCceEEEecCccccc-ccC----
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGKITNL-----RRVTYLVMDEADRMF-DMG---- 633 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~~~~l-----~~~~~vVlDEah~~~-~~~---- 633 (976)
..+|+.+.+++||.+.......+ .++|+|+||+.| .++|..+. ...+ ..+.++||||||.|+ |..
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~--~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNM--AFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCC--ccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 99999999999999887765554 589999999999 89987542 1223 578999999999873 110
Q ss_pred -----------CchHHHHHHHhcCCC--------------Cc--------------------------------------
Q 002040 634 -----------FEPQITRIVQNIRPD--------------RQ-------------------------------------- 650 (976)
Q Consensus 634 -----------f~~~i~~il~~~~~~--------------~q-------------------------------------- 650 (976)
+...+..++..+... .+
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 011111122222111 11
Q ss_pred ------------------------------------------------------------------------------EE
Q 002040 651 ------------------------------------------------------------------------------TV 652 (976)
Q Consensus 651 ------------------------------------------------------------------------------~i 652 (976)
+-
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence 22
Q ss_pred EEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHH
Q 002040 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALF 731 (976)
Q Consensus 653 ~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~ 731 (976)
+||+|.......+.. +++-.+...+...+...... ....+.....|+..++..+...+. +.|+||||+|+..++.|+
T Consensus 384 GMTGTa~te~~Ef~~-iY~l~Vv~IPtnkp~~R~d~-~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls 461 (896)
T PRK13104 384 GMTGTADTEAYEFQQ-IYNLEVVVIPTNRSMIRKDE-ADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLS 461 (896)
T ss_pred cCCCCChhHHHHHHH-HhCCCEEECCCCCCcceecC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHH
Confidence 233332222211111 11111111111111111111 112344556788888888876654 459999999999999999
Q ss_pred HHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC-----------------------------
Q 002040 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE----------------------------- 782 (976)
Q Consensus 732 ~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~----------------------------- 782 (976)
..|...|+++..||+.+.+.++..+...|+.|. |+|||++|+||+||.=
T Consensus 462 ~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (896)
T PRK13104 462 QLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQK 539 (896)
T ss_pred HHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhh
Confidence 999999999999999999999999999999995 9999999999999972
Q ss_pred ---------CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcC
Q 002040 783 ---------LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (976)
Q Consensus 783 ---------v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~ 824 (976)
=-+||--..+.|----.|-.||+||.|.+|.+..|++-+|.-
T Consensus 540 ~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l 590 (896)
T PRK13104 540 RHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNL 590 (896)
T ss_pred hhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 236777778888888899999999999999999999977653
No 90
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.6e-28 Score=293.27 Aligned_cols=322 Identities=21% Similarity=0.252 Sum_probs=242.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEE
Q 002040 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (976)
Q Consensus 492 ~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~ 571 (976)
....+.+.+|.+++-+||+|+||||||++.-..++.... +.+..+.++-|.|..|..+ ..+++..++..+
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsv---A~RvAeel~~~~ 122 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSV---AERVAEELGEKL 122 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHH---HHHHHHHhCCCc
Confidence 445566777788889999999999999975555554432 2345678888999777655 445555667666
Q ss_pred EEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHH-HHhcCCCC
Q 002040 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRI-VQNIRPDR 649 (976)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~i-l~~~~~~~ 649 (976)
...+|.....+. .....+.|.|+|.|.|+..+... ..|+.+++||||||| +.++.+|.-.+..- +..++++.
T Consensus 123 G~~VGY~iRfe~--~~s~~Trik~mTdGiLlrei~~D----~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DL 196 (845)
T COG1643 123 GETVGYSIRFES--KVSPRTRIKVMTDGILLREIQND----PLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196 (845)
T ss_pred CceeeEEEEeec--cCCCCceeEEeccHHHHHHHhhC----cccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCc
Confidence 666666655443 33456899999999999999765 468999999999999 88888877666554 66666689
Q ss_pred cEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecC-cch-HHHHHHHHHHhhh--cCCcEEEEecCHH
Q 002040 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-ESD-RFLRLLELLGEWY--EKGKILIFVHSQE 725 (976)
Q Consensus 650 q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~-~~~-k~~~l~~~l~~~~--~~~kvLIF~~s~~ 725 (976)
++|+||||+... .+..++++...+.+.++.++.. ..|.... ... -...+...+.... ..|.+|||.+.+.
T Consensus 197 KiIimSATld~~---rfs~~f~~apvi~i~GR~fPVe---i~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 197 KLIIMSATLDAE---RFSAYFGNAPVIEIEGRTYPVE---IRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred eEEEEecccCHH---HHHHHcCCCCEEEecCCccceE---EEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 999999999765 4566677666677777776532 2231111 222 2233333333332 3689999999999
Q ss_pred HHHHHHHHHHH----CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC----------
Q 002040 726 KCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA---------- 791 (976)
Q Consensus 726 ~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~---------- 791 (976)
++..++..|.+ ..+.++++||.++..++.++++.-..|..+|++||+|++++|+|++|.+||+-+.
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999998 3477999999999999999999888898889999999999999999999997332
Q ss_pred --------CCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHH
Q 002040 792 --------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845 (976)
Q Consensus 792 --------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~ 845 (976)
|.|-++..||.|||||.+ +|.||-+|++.+. .....+..|+.|.
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~---------~~~~~~t~PEIlr 402 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDF---------LAFPEFTLPEILR 402 (845)
T ss_pred CceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHH---------HhcccCCChhhhh
Confidence 567889999999999997 9999999997432 2334456777664
No 91
>PRK09694 helicase Cas3; Provisional
Probab=99.96 E-value=2.2e-27 Score=288.11 Aligned_cols=313 Identities=20% Similarity=0.228 Sum_probs=205.4
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 486 ~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
+...|+|+|..+........-+||.||||+|||.++++++...+.. +....++|++||+++++|++..+..++.
T Consensus 283 ~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 283 NGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 3458999999886554456678999999999999987766654432 2245789999999999999999987654
Q ss_pred hc--CcEEEEeeCCCChHHHHH--------------------HHh----c---CCeEEEeCchhHHHHHHhcCCcccccC
Q 002040 566 VM--GVRCVPVYGGSGVAQQIS--------------------ELK----R---GTEIVVCTPGRMIDILCTSGGKITNLR 616 (976)
Q Consensus 566 ~~--~~~~~~~~gg~~~~~~~~--------------------~l~----~---~~~Iiv~Tp~~L~~~l~~~~~~~~~l~ 616 (976)
.+ ...+.+++|......... .+. + -.+|+|||+..++..+..... ..+.
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~lR 434 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFIR 434 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHHH
Confidence 32 345667776654221100 111 1 269999999988755433211 1222
Q ss_pred Cc----eEEEecCcccccccCCchHHHHHHHhc-CCCCcEEEEeccCcHHHHHH-HHHHcCC-Ce-------EEE-eCCc
Q 002040 617 RV----TYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEIL-ARKVLNK-PV-------EIQ-VGGR 681 (976)
Q Consensus 617 ~~----~~vVlDEah~~~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~~~~l-~~~~l~~-~~-------~i~-~~~~ 681 (976)
.+ ++|||||+|.+ +......+..++..+ .....+|+||||+|..+... ...+-.. ++ .++ ....
T Consensus 435 ~~~La~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~ 513 (878)
T PRK09694 435 GFGLGRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVN 513 (878)
T ss_pred HHhhccCeEEEechhhC-CHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccc
Confidence 22 48999999965 222233444444443 23567999999999876543 3332111 10 000 0000
Q ss_pred ---cccc------CCceEEEEe--c--CcchHHHHHHHHHHh-hhcCCcEEEEecCHHHHHHHHHHHHHCC---CCceec
Q 002040 682 ---SVVN------KDITQLVEV--R--PESDRFLRLLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKHG---YPCLSL 744 (976)
Q Consensus 682 ---~~~~------~~i~q~~~~--~--~~~~k~~~l~~~l~~-~~~~~kvLIF~~s~~~~~~l~~~L~~~~---~~~~~l 744 (976)
.... ......+.+ . ........++..|.. ...++++||||||+..|..++..|...+ +.+..+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ll 593 (878)
T PRK09694 514 GAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLF 593 (878)
T ss_pred cceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEE
Confidence 0000 001111111 1 100111233333333 3346789999999999999999999764 679999
Q ss_pred cCCCCHHHH----HHHHHHh-ccCC---ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCC
Q 002040 745 HGAKDQTDR----ESTISDF-KSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (976)
Q Consensus 745 hg~~~~~~R----~~~~~~F-~~g~---~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~ 810 (976)
||.++..+| ..+++.| ++|. ..|||||+++++|||| ++++||...+| ...++||+||+||.+.
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999999999 4678888 6776 4799999999999999 57999998888 6799999999999875
No 92
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.2e-27 Score=282.90 Aligned_cols=323 Identities=21% Similarity=0.265 Sum_probs=233.2
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|++.|.-+.-++..|+ |..+.||+|||+++++|++..... |..|-||+||--||.|.+.++..++
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHH
Confidence 564 48888888777766665 999999999999999999877664 6678999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHH-HHHHhcC---CcccccCCceEEEecCccccc-ccC------
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~-~~l~~~~---~~~~~l~~~~~vVlDEah~~~-~~~------ 633 (976)
..+|+.|.++.|+.+..+....+ .++|++||...|. ++|..+- ........+.+.||||+|.|+ +..
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLii 223 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLII 223 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceec
Confidence 99999999999887766654444 4899999998763 4443321 011124568899999999763 110
Q ss_pred ---------CchHHHHHHHhcCCC--------------------------------------------------------
Q 002040 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (976)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (976)
+...+..++..+...
T Consensus 224 sg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~ 303 (796)
T PRK12906 224 SGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQ 303 (796)
T ss_pred CCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHH
Confidence 000111111111100
Q ss_pred ------------------------------------------------------------------------CcEEEEec
Q 002040 649 ------------------------------------------------------------------------RQTVLFSA 656 (976)
Q Consensus 649 ------------------------------------------------------------------------~q~i~~SA 656 (976)
.++.+||+
T Consensus 304 Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTG 383 (796)
T PRK12906 304 ALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTG 383 (796)
T ss_pred HHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCC
Confidence 11334444
Q ss_pred cCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHH
Q 002040 657 TFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLL 735 (976)
Q Consensus 657 T~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~ 735 (976)
|.......+ ...++-++...+...+...... ....+.....|+..++..+.... .+.++||||+|+..++.|+..|.
T Consensus 384 Ta~~e~~Ef-~~iY~l~vv~IPtnkp~~r~d~-~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~ 461 (796)
T PRK12906 384 TAKTEEEEF-REIYNMEVITIPTNRPVIRKDS-PDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLD 461 (796)
T ss_pred CCHHHHHHH-HHHhCCCEEEcCCCCCeeeeeC-CCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHH
Confidence 443332222 2222222222211111111111 11234455678888888886544 45699999999999999999999
Q ss_pred HCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCC---CCc-----EEEEeCCCCCHHHHHHHhcccCC
Q 002040 736 KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGR 807 (976)
Q Consensus 736 ~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~---~v~-----~VI~~d~p~s~~~y~Qr~GR~gR 807 (976)
+.|+++..+||.+.+.++..+...++.|. |+|||++|+||+||+ +|. +||+++.|.+...|.|++||+||
T Consensus 462 ~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGR 539 (796)
T PRK12906 462 EAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGR 539 (796)
T ss_pred HCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhcc
Confidence 99999999999999888888888877777 999999999999995 788 99999999999999999999999
Q ss_pred CCCccEEEEEecCCCcC
Q 002040 808 AGRKGCAITFISEEDAK 824 (976)
Q Consensus 808 ~g~~g~~~~~~~~~d~~ 824 (976)
.|.+|.+..|++.+|.-
T Consensus 540 qG~~G~s~~~~sleD~l 556 (796)
T PRK12906 540 QGDPGSSRFYLSLEDDL 556 (796)
T ss_pred CCCCcceEEEEeccchH
Confidence 99999999999987653
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=1.4e-27 Score=283.30 Aligned_cols=323 Identities=22% Similarity=0.247 Sum_probs=238.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|++.|.-+.-.+..| .|+.+.||+|||++|++|++..... |..|-||+||..||.|.++++..++
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHH
Confidence 564 4788888777666655 5999999999999999999644332 3357799999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCCc---ccccCCceEEEecCccccc-ccC------
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGK---ITNLRRVTYLVMDEADRMF-DMG------ 633 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~---~~~l~~~~~vVlDEah~~~-~~~------ 633 (976)
..+|+.+.+++|+.+..++...+ .++|+|+||+.| .++|..+... ...+..+.++||||||.|+ +..
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLii 224 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLII 224 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceee
Confidence 99999999999999888776665 389999999999 8888654211 1236788999999999873 100
Q ss_pred ---------CchHHHHHHHhcCCC--------------------------------------------------------
Q 002040 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (976)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (976)
+...+..++..+..+
T Consensus 225 Sg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d 304 (830)
T PRK12904 225 SGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRD 304 (830)
T ss_pred ECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcC
Confidence 011111111111110
Q ss_pred -------------------------------------------------------------CcEEEEeccCcHHHHHHHH
Q 002040 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (976)
Q Consensus 649 -------------------------------------------------------------~q~i~~SAT~~~~~~~l~~ 667 (976)
.++.+||+|.......+..
T Consensus 305 ~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~ 384 (830)
T PRK12904 305 VDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFRE 384 (830)
T ss_pred CcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHH
Confidence 1245666665544433333
Q ss_pred HHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccC
Q 002040 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (976)
Q Consensus 668 ~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg 746 (976)
.| +-.+...+...+...... ....+.....|+..+...+..... +.++||||+|+..++.|+..|...|+++..|||
T Consensus 385 iY-~l~vv~IPtnkp~~r~d~-~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLna 462 (830)
T PRK12904 385 IY-NLDVVVIPTNRPMIRIDH-PDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNA 462 (830)
T ss_pred Hh-CCCEEEcCCCCCeeeeeC-CCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccC
Confidence 32 333322222222211111 112344566789999988876443 459999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCC--------------------------------------cEEEE
Q 002040 747 AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL--------------------------------------ELVIN 788 (976)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v--------------------------------------~~VI~ 788 (976)
. +.+|+..+..|..+...|+|||++|+||+||+-- -+||-
T Consensus 463 k--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVig 540 (830)
T PRK12904 463 K--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIG 540 (830)
T ss_pred c--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEe
Confidence 5 8899999999999999999999999999999643 36887
Q ss_pred eCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcC
Q 002040 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (976)
Q Consensus 789 ~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~ 824 (976)
...|.|----.|-.||+||.|.+|.+..|++-+|.-
T Consensus 541 TerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 541 TERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred cccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 888889888999999999999999999999877653
No 94
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=2.5e-27 Score=290.01 Aligned_cols=317 Identities=22% Similarity=0.291 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.+.|||.+++.+++ .|.++|++.+||.|||++++.. +.++.... +....+|||||. .|+.||..+|.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIal-L~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISL-LGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHH-HHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 58899999999986 5788999999999999985544 44443321 122347999996 56689999999997
Q ss_pred hhcCcEEEEeeCCCChHHHHH-H-H-hcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQIS-E-L-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~-~-l-~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~i 641 (976)
. .+.++.++|.......+. . + ....+|||+|+..+...... ..--.+.+|||||||++-+. ...+..+
T Consensus 243 p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~-----L~k~~W~~VIvDEAHrIKN~--~Sklska 313 (1033)
T PLN03142 243 P--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA-----LKRFSWRYIIIDEAHRIKNE--NSLLSKT 313 (1033)
T ss_pred C--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH-----hccCCCCEEEEcCccccCCH--HHHHHHH
Confidence 5 345555665443222211 1 1 23579999999988654322 12235789999999998653 3345555
Q ss_pred HHhcCCCCcEEEEeccCcHH-HHH---HHHHH------------------------------------------------
Q 002040 642 VQNIRPDRQTVLFSATFPRQ-VEI---LARKV------------------------------------------------ 669 (976)
Q Consensus 642 l~~~~~~~q~i~~SAT~~~~-~~~---l~~~~------------------------------------------------ 669 (976)
+..+.. ...|++||||-.+ +.. ++..+
T Consensus 314 lr~L~a-~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~ 392 (1033)
T PLN03142 314 MRLFST-NYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEK 392 (1033)
T ss_pred HHHhhc-CcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhh
Confidence 555543 3468899996321 111 10000
Q ss_pred -cCCCeE--EEeCCcc--------c-------ccC--------C-------------ceEE----------EEecCcchH
Q 002040 670 -LNKPVE--IQVGGRS--------V-------VNK--------D-------------ITQL----------VEVRPESDR 700 (976)
Q Consensus 670 -l~~~~~--i~~~~~~--------~-------~~~--------~-------------i~q~----------~~~~~~~~k 700 (976)
+..... +.+.-.. . ... . +... -.+...+.|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 000000 0000000 0 000 0 0000 001122456
Q ss_pred HHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccC---CccEEEecCcccc
Q 002040 701 FLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIATSVAAR 776 (976)
Q Consensus 701 ~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~vLVaT~v~~~ 776 (976)
+..|..+|..+.. +.+|||||+....++.|..+|...|+.++.|||+++..+|..++..|++. .+.|||+|.+++.
T Consensus 473 l~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGl 552 (1033)
T PLN03142 473 MVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGL 552 (1033)
T ss_pred HHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEecccccc
Confidence 6666666666543 45999999999999999999999999999999999999999999999753 3568999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEE--EecCC
Q 002040 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT--FISEE 821 (976)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~--~~~~~ 821 (976)
|||+..+++||+||+||||..+.|++||++|.|++..|++ |++..
T Consensus 553 GINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 553 GINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred CCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 9999999999999999999999999999999999866554 45543
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=1.3e-27 Score=249.50 Aligned_cols=202 Identities=51% Similarity=0.867 Sum_probs=183.7
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 469 WHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 469 ~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
|.++++++.+.+.|..+|+..|+++|.++++.+++|+++|+++|||+|||++|++|++.++.... ...++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67899999999999999999999999999999999999999999999999999999999988642 135789999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccc
Q 002040 549 TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (976)
Q Consensus 549 tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~ 628 (976)
|++|+.|+...+..+....++.+.+++|+.........+..+++|+||||+.|..++.... ..+..+.+|||||||.
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~l~~lIvDE~h~ 154 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK---LDLSKVKYLVLDEADR 154 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC---CChhhCCEEEEeChHH
Confidence 9999999999999998888899999999998877777776689999999999999887543 5678899999999999
Q ss_pred ccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEE
Q 002040 629 MFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (976)
Q Consensus 629 ~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i 676 (976)
+.+.+|...+..++..+....|+++||||+++.+..++..++.+|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 155 MLDMGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hhccChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 998889999999999999999999999999999999999999998865
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=279.17 Aligned_cols=362 Identities=23% Similarity=0.320 Sum_probs=261.0
Q ss_pred cCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCC---CCCeEEEEccCHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG---DGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~---~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
+|...+.++|..+.++.+.+ .++++|||||+|||.++++-||+.+........+ ...++++++|..+|+..|...|
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 45566889999999998866 5899999999999999999999998765432222 1348999999999999999999
Q ss_pred HHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHH
Q 002040 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (976)
Q Consensus 561 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~ 640 (976)
.+....+|+.|.-++|......+ .+ .+++||||||+.. +.+....+.....+-+.++|+||.|. +....++.+..
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~--qi-eeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHL-LhDdRGpvLES 459 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKE--QI-EETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHL-LHDDRGPVLES 459 (1674)
T ss_pred HhhccccCcEEEEecccccchhh--hh-hcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhh-cccccchHHHH
Confidence 99999999999999998654322 12 3589999999987 56666555555566688999999994 44456777766
Q ss_pred HHHhc-------CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc---chHHH----HHHH
Q 002040 641 IVQNI-------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE---SDRFL----RLLE 706 (976)
Q Consensus 641 il~~~-------~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~---~~k~~----~l~~ 706 (976)
|+... .....++++|||+|+-.. .+..+..++--+...+.++.+.++.|.++-... ..++. ...+
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLPNy~D-V~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ye 538 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATLPNYED-VASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYE 538 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccCCchhh-hHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHH
Confidence 65443 235789999999998654 344444444444444555555666666543332 22332 2334
Q ss_pred HHHhhhcCCcEEEEecCHHHHHHHHHHHHHC-------------------------------------CCCceeccCCCC
Q 002040 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAKD 749 (976)
Q Consensus 707 ~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~ 749 (976)
.+.+....+++|||+.++++....++.++.. .+.++++|+||+
T Consensus 539 KVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~ 618 (1674)
T KOG0951|consen 539 KVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN 618 (1674)
T ss_pred HHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCC
Confidence 4444455689999999998887777776521 467899999999
Q ss_pred HHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eCC------CCCHHHHHHHhcccCCCCCc--cEEEEE
Q 002040 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRK--GCAITF 817 (976)
Q Consensus 750 ~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d~------p~s~~~y~Qr~GR~gR~g~~--g~~~~~ 817 (976)
..+|..+...|.+|.++|||+|-.++.|+|+|+-+++|- ||+ +.++.+.+|++||+||.+-. |..++.
T Consensus 619 R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiii 698 (1674)
T KOG0951|consen 619 RKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIII 698 (1674)
T ss_pred cchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeec
Confidence 999999999999999999999999999999998777773 665 44789999999999997543 444433
Q ss_pred ecCCCcCchHHHHHHHhhccCCCC---hHHHHHHHHHHHHHhhh
Q 002040 818 ISEEDAKYSPDLVKALELSEQVVP---DDLKALADSFMAKVNQG 858 (976)
Q Consensus 818 ~~~~d~~~~~~i~~~l~~~~~~vp---~~l~~l~~~~~~~~~~~ 858 (976)
-...+..+ .+...++.+| ..+..+++.+.+.+-.|
T Consensus 699 t~~se~qy------yls~mn~qLpiesq~~~rl~d~lnaeiv~G 736 (1674)
T KOG0951|consen 699 TDHSELQY------YLSLMNQQLPIESQFVSRLADCLNAEIVLG 736 (1674)
T ss_pred cCchHhhh------hHHhhhhcCCChHHHHHHhhhhhhhhhhcc
Confidence 33333222 3333344444 23466666666665443
No 97
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=3.1e-27 Score=272.72 Aligned_cols=298 Identities=20% Similarity=0.273 Sum_probs=204.5
Q ss_pred CCCcHHHHHHHHHHhc----CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMS----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~----g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
..|+++|.+|+..+.. ++.+++++|||+|||++++..+... +..+||||||.+|+.||.+.+..+
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4589999999999998 8899999999999999876655533 223899999999999998777665
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHH
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~ 643 (976)
+... . .+..+||.... +.. ..|+|+|...+...... .......+++|||||||++.... ...++.
T Consensus 104 ~~~~-~-~~g~~~~~~~~-----~~~-~~i~vat~qtl~~~~~l---~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~ 168 (442)
T COG1061 104 LLLN-D-EIGIYGGGEKE-----LEP-AKVTVATVQTLARRQLL---DEFLGNEFGLIIFDEVHHLPAPS----YRRILE 168 (442)
T ss_pred cCCc-c-ccceecCceec-----cCC-CcEEEEEhHHHhhhhhh---hhhcccccCEEEEEccccCCcHH----HHHHHH
Confidence 4321 1 23334443221 111 46999999988664100 11233479999999999976433 344444
Q ss_pred hcCCCCcEEEEeccCcHHHHH---HHHHHcCCCeEEEeCCccccc-----CCceEEEEe-c-------------------
Q 002040 644 NIRPDRQTVLFSATFPRQVEI---LARKVLNKPVEIQVGGRSVVN-----KDITQLVEV-R------------------- 695 (976)
Q Consensus 644 ~~~~~~q~i~~SAT~~~~~~~---l~~~~l~~~~~i~~~~~~~~~-----~~i~q~~~~-~------------------- 695 (976)
.+.....+|+||||++..-.. ....+++ ++.+.+....... +.....+.+ .
T Consensus 169 ~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 169 LLSAAYPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred hhhcccceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 443333389999998743211 1111111 3333322211111 000000000 0
Q ss_pred -----------------CcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHH
Q 002040 696 -----------------PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (976)
Q Consensus 696 -----------------~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~ 758 (976)
....++..+..++.......++||||.+...+..++..|...++ +..+.|.++..+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 00112222223332222345999999999999999999988887 899999999999999999
Q ss_pred HhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCC-CCCccE
Q 002040 759 DFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGR-AGRKGC 813 (976)
Q Consensus 759 ~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR-~g~~g~ 813 (976)
.|+.|.+++||++.++..|+|+|+++++|...+..|+..|+||+||+-| ...++.
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 9999999999999999999999999999999999999999999999999 333443
No 98
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=5.3e-27 Score=273.84 Aligned_cols=288 Identities=18% Similarity=0.232 Sum_probs=197.0
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---
Q 002040 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI--- 584 (976)
Q Consensus 508 i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~--- 584 (976)
|+.|+||||||.+|+..+...+. .|.++|||+|+++|+.|++..|+.. ++..+..++++.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~--------~g~~vLvlvP~i~L~~Q~~~~l~~~---f~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA--------LGKSVLVLVPEIALTPQMIQRFKYR---FGSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHH---hCCcEEEEECCCCHHHHHHHH
Confidence 57899999999998766555443 2568999999999999999988875 467788888887765543
Q ss_pred HHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCC-chH--H--HHHHHhcCCCCcEEEEeccC
Q 002040 585 SELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQ--I--TRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 585 ~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f-~~~--i--~~il~~~~~~~q~i~~SAT~ 658 (976)
..+.. .++|||+|+..|. ..+.++++|||||+|....++. .+. . ..++.....+.++|++|||+
T Consensus 70 ~~~~~g~~~IVVGTrsalf----------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATP 139 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF----------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATP 139 (505)
T ss_pred HHHHcCCCCEEECChHHHc----------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCC
Confidence 33333 4799999998662 3577899999999997653331 111 1 23344445678999999998
Q ss_pred cHHHHHHHHHHcCCCeEEEeCCcccc-cCCceEEEEecCcc---hHHHHHHHHHHhhhc-CCcEEEEecCHHH-------
Q 002040 659 PRQVEILARKVLNKPVEIQVGGRSVV-NKDITQLVEVRPES---DRFLRLLELLGEWYE-KGKILIFVHSQEK------- 726 (976)
Q Consensus 659 ~~~~~~l~~~~l~~~~~i~~~~~~~~-~~~i~q~~~~~~~~---~k~~~l~~~l~~~~~-~~kvLIF~~s~~~------- 726 (976)
+......+. .+....+.+...... .......+...... .--..|+..|..... ++++|||+|++..
T Consensus 140 sles~~~~~--~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~ 217 (505)
T TIGR00595 140 SLESYHNAK--QKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCR 217 (505)
T ss_pred CHHHHHHHh--cCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhh
Confidence 765433332 122222222211110 01111111111111 111345556655554 4589999776532
Q ss_pred -----------------------------------------------------HHHHHHHHHHC--CCCceeccCCCCHH
Q 002040 727 -----------------------------------------------------CDALFRDLLKH--GYPCLSLHGAKDQT 751 (976)
Q Consensus 727 -----------------------------------------------------~~~l~~~L~~~--~~~~~~lhg~~~~~ 751 (976)
.+.+...|.+. +.++..+|++++..
T Consensus 218 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~ 297 (505)
T TIGR00595 218 SCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSR 297 (505)
T ss_pred hCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccC
Confidence 36777777765 78899999999877
Q ss_pred HH--HHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC------------CHHHHHHHhcccCCCCCccEEEEE
Q 002040 752 DR--ESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN------------HYEDYVHRVGRTGRAGRKGCAITF 817 (976)
Q Consensus 752 ~R--~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~------------s~~~y~Qr~GR~gR~g~~g~~~~~ 817 (976)
.+ ..++..|.+|+++|||+|++++.|+|+|++++|+.+|... ....|+|++||+||.+..|.+++.
T Consensus 298 ~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiq 377 (505)
T TIGR00595 298 KGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQ 377 (505)
T ss_pred ccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEE
Confidence 65 8999999999999999999999999999999987554432 146789999999999999998864
Q ss_pred e
Q 002040 818 I 818 (976)
Q Consensus 818 ~ 818 (976)
.
T Consensus 378 t 378 (505)
T TIGR00595 378 T 378 (505)
T ss_pred e
Confidence 4
No 99
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=8.9e-27 Score=262.46 Aligned_cols=314 Identities=22% Similarity=0.329 Sum_probs=222.4
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.+.++|.++++|+. +|-++|+..+||.|||++ .++++.+|.... ...||. ||+||...| ..|.++|.+|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~---~~~GPf-LVi~P~StL-~NW~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRK---GIPGPF-LVIAPKSTL-DNWMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhc---CCCCCe-EEEeeHhhH-HHHHHHHHHhC
Confidence 57899999999987 577899999999999998 455555555432 123554 999999888 66889999998
Q ss_pred hhcCcEEEEeeCCCChHHHH-HHH--hcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQI-SEL--KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~-~~l--~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~i 641 (976)
. ++.+++++|.......+ ..+ ....+|+|+|++..+.--. ...--.|.||||||||++-+.. ..+..+
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~-----~lk~~~W~ylvIDEaHRiKN~~--s~L~~~ 311 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS-----FLKKFNWRYLVIDEAHRIKNEK--SKLSKI 311 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH-----HHhcCCceEEEechhhhhcchh--hHHHHH
Confidence 5 56777777765332221 111 2257999999998765321 1222358999999999987653 344456
Q ss_pred HHhcCCCCcEEEEeccCcH-HHHH--------------------------------------------------------
Q 002040 642 VQNIRPDRQTVLFSATFPR-QVEI-------------------------------------------------------- 664 (976)
Q Consensus 642 l~~~~~~~q~i~~SAT~~~-~~~~-------------------------------------------------------- 664 (976)
+..+.... -|++|+||-. ++..
T Consensus 312 lr~f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~ 390 (971)
T KOG0385|consen 312 LREFKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEK 390 (971)
T ss_pred HHHhcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhh
Confidence 66654433 3566666411 1100
Q ss_pred -------------------------------------------------HHHHHcCCCeEEEeCCcccccCCceEEEEec
Q 002040 665 -------------------------------------------------LARKVLNKPVEIQVGGRSVVNKDITQLVEVR 695 (976)
Q Consensus 665 -------------------------------------------------l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~ 695 (976)
..++.++.|..+... .+. +.....-.++
T Consensus 391 sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~-ePg--~pyttdehLv 467 (971)
T KOG0385|consen 391 SLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA-EPG--PPYTTDEHLV 467 (971)
T ss_pred cCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC-CCC--CCCCcchHHH
Confidence 011122222211110 000 0001111123
Q ss_pred CcchHHHHHHHHHHhhhcC-CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccC---CccEEEec
Q 002040 696 PESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN---VCNLLIAT 771 (976)
Q Consensus 696 ~~~~k~~~l~~~l~~~~~~-~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g---~~~vLVaT 771 (976)
..+.|+..|-.+|..+... .+||||.+...+.+.|..|+.-.+|.++.|.|.++..+|...|+.|... .+-+|++|
T Consensus 468 ~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLST 547 (971)
T KOG0385|consen 468 TNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLST 547 (971)
T ss_pred hcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEec
Confidence 3456777777787777655 4999999999999999999999999999999999999999999999844 46789999
Q ss_pred CcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEE--EecCC
Q 002040 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT--FISEE 821 (976)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~--~~~~~ 821 (976)
.+++.|||+..+++||.||..|||..-+|.+.||+|.||+..|.+ |+|..
T Consensus 548 RAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 548 RAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred cccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999999999999999999999999999999766555 56654
No 100
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1e-25 Score=266.33 Aligned_cols=322 Identities=18% Similarity=0.220 Sum_probs=228.9
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|. .|++.|.-+--.+ ...-|+.++||.|||++|++|++..++. |..|.||+|+..||.|..+++..++
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 554 3667776554444 4556899999999999999999877654 4459999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCCc---ccccCCceEEEecCccccccc-CC-----
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGGK---ITNLRRVTYLVMDEADRMFDM-GF----- 634 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~~---~~~l~~~~~vVlDEah~~~~~-~f----- 634 (976)
..+|+.|.+++++.+....... -+++|+|+||+.| +++|..+-.. ......+.++||||||.|+-. ..
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLII 225 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLII 225 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceee
Confidence 9999999999999886443222 2689999999999 8888665110 112367889999999976421 10
Q ss_pred ----------chHHHHHHHhcCC-------------------CCc-----------------------------------
Q 002040 635 ----------EPQITRIVQNIRP-------------------DRQ----------------------------------- 650 (976)
Q Consensus 635 ----------~~~i~~il~~~~~-------------------~~q----------------------------------- 650 (976)
...+..++..+.. ..+
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~ 305 (908)
T PRK13107 226 SGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANIS 305 (908)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhH
Confidence 0011111111110 011
Q ss_pred --------------------------------------------------------------------------------
Q 002040 651 -------------------------------------------------------------------------------- 650 (976)
Q Consensus 651 -------------------------------------------------------------------------------- 650 (976)
T Consensus 306 ~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (908)
T PRK13107 306 LLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYE 385 (908)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhh
Confidence
Q ss_pred -EEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcC-CcEEEEecCHHHHH
Q 002040 651 -TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCD 728 (976)
Q Consensus 651 -~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~-~kvLIF~~s~~~~~ 728 (976)
+.+||+|.......|... ++-.+...+...+....... ...+.....|+..++..+...+.. .++||||+|+..++
T Consensus 386 kL~GMTGTa~te~~Ef~~i-Y~l~Vv~IPTnkp~~R~d~~-d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se 463 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHI-YGLDTVVVPTNRPMVRKDMA-DLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSE 463 (908)
T ss_pred HhhcccCCChHHHHHHHHH-hCCCEEECCCCCCccceeCC-CcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHH
Confidence 222333322222211111 11111111111111111111 123345577888888888776654 49999999999999
Q ss_pred HHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCC---------------------------
Q 002040 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK--------------------------- 781 (976)
Q Consensus 729 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~--------------------------- 781 (976)
.|+..|...|+++..+|+.+++.++..+...|+.|. |+|||++|+||+||.
T Consensus 464 ~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~ 541 (908)
T PRK13107 464 LLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADW 541 (908)
T ss_pred HHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999 999999999999997
Q ss_pred ----------CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 002040 782 ----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (976)
Q Consensus 782 ----------~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~ 823 (976)
+=-+||-...+.|----.|-.||+||.|.+|.+..|++-+|.
T Consensus 542 ~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 542 QIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 234788888888888889999999999999999999997765
No 101
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=9.5e-26 Score=258.89 Aligned_cols=324 Identities=19% Similarity=0.244 Sum_probs=234.3
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 483 RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 483 ~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
..++|. |-++|.+||-.+..|..|+|.|+|.+|||+++-.++... ..++.++++..|-.+|-+|-+..|+.
T Consensus 292 ~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala--------q~h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 292 LIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA--------QKHMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH--------HhhccceEecchhhhhccchHHHHHH
Confidence 345654 889999999999999999999999999999965554432 12466899999999999999999887
Q ss_pred HHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHH
Q 002040 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (976)
Q Consensus 563 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il 642 (976)
-+...| +++|.. ++...+.++|||.+.|..+|.++. .-++++.+||+||+|.+-|...+..+..++
T Consensus 363 tF~Dvg----LlTGDv-------qinPeAsCLIMTTEILRsMLYrga---dliRDvE~VIFDEVHYiND~eRGvVWEEVi 428 (1248)
T KOG0947|consen 363 TFGDVG----LLTGDV-------QINPEASCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYINDVERGVVWEEVI 428 (1248)
T ss_pred hccccc----eeecce-------eeCCCcceEeehHHHHHHHHhccc---chhhccceEEEeeeeecccccccccceeee
Confidence 665444 677766 556678999999999999998765 346779999999999988887778888899
Q ss_pred HhcCCCCcEEEEeccCcHHHHHHHHHHc-CCCeEEEeCCcccccCCceEEEEecC-------------------------
Q 002040 643 QNIRPDRQTVLFSATFPRQVEILARKVL-NKPVEIQVGGRSVVNKDITQLVEVRP------------------------- 696 (976)
Q Consensus 643 ~~~~~~~q~i~~SAT~~~~~~~l~~~~l-~~~~~i~~~~~~~~~~~i~q~~~~~~------------------------- 696 (976)
-.+++..++|++|||.|+..+ ++..+. ...-.|.+......+-.+.+++....
T Consensus 429 IMlP~HV~~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 429 IMLPRHVNFILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred eeccccceEEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 999999999999999998876 443332 11111222111111111111111000
Q ss_pred --------------------------------------cchHH--HHHHHHHHhhhc--CCcEEEEecCHHHHHHHHHHH
Q 002040 697 --------------------------------------ESDRF--LRLLELLGEWYE--KGKILIFVHSQEKCDALFRDL 734 (976)
Q Consensus 697 --------------------------------------~~~k~--~~l~~~l~~~~~--~~kvLIF~~s~~~~~~l~~~L 734 (976)
...+. ...+.+|..... --|+||||-++..|+..+.+|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 00011 113333333222 238999999999999999999
Q ss_pred HHCC---------------------------------------CCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 735 LKHG---------------------------------------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 735 ~~~~---------------------------------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
...+ -.++++||++-+--++-+.-.|..|-++||+||..++
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFA 667 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFA 667 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhh
Confidence 6541 1367799999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEe----CC----CCCHHHHHHHhcccCCCCC--ccEEEEEecCCCcCchHHHHH
Q 002040 776 RGLDVKELELVINF----DA----PNHYEDYVHRVGRTGRAGR--KGCAITFISEEDAKYSPDLVK 831 (976)
Q Consensus 776 ~GlDi~~v~~VI~~----d~----p~s~~~y~Qr~GR~gR~g~--~g~~~~~~~~~d~~~~~~i~~ 831 (976)
+|+|.|.-.+|+.- |- -..|-.|.|++|||||-|- +|+++++.... ......+.+
T Consensus 668 MGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~~ 732 (1248)
T KOG0947|consen 668 MGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLKR 732 (1248)
T ss_pred hhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHhh
Confidence 99999987777641 11 2257799999999999874 68888777644 233334443
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=2e-25 Score=278.81 Aligned_cols=306 Identities=17% Similarity=0.219 Sum_probs=198.4
Q ss_pred CCCcHHHHHHHHHHh----c-CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIM----S-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il----~-g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
..|+++|.+||..+. . .+.+|++++||||||.+++..+ ..+... +...+||||||+.+|+.|+...|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li-~~L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALM-YRLLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHH-HHHHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998876 2 3679999999999998855444 344332 2246899999999999999999988
Q ss_pred HHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC--cccccCCceEEEecCcccccc---------
Q 002040 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--KITNLRRVTYLVMDEADRMFD--------- 631 (976)
Q Consensus 563 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~--~~~~l~~~~~vVlDEah~~~~--------- 631 (976)
+....+..+..+++....... .......|+|+|+..|...+..... ....+..+++|||||||+...
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 632222122222222111111 1123579999999998776533211 113467889999999998531
Q ss_pred cC------CchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCc----ccc-----cCCceEE-----
Q 002040 632 MG------FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR----SVV-----NKDITQL----- 691 (976)
Q Consensus 632 ~~------f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~----~~~-----~~~i~q~----- 691 (976)
.+ +...+..++.++ +...|+|||||.... ..+++.|+....-.. +.. +..+...
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t----~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~g 637 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHT----TEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEG 637 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccch----hHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccc
Confidence 01 134566777765 356899999986532 223333332110000 000 0000000
Q ss_pred ------------------E--EecCc---------------chHHHHHHHHHHhhh---cCCcEEEEecCHHHHHHHHHH
Q 002040 692 ------------------V--EVRPE---------------SDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRD 733 (976)
Q Consensus 692 ------------------~--~~~~~---------------~~k~~~l~~~l~~~~---~~~kvLIF~~s~~~~~~l~~~ 733 (976)
+ ...+. ......++..|..+. ..+++||||.+...|+.++..
T Consensus 638 i~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~ 717 (1123)
T PRK11448 638 IHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRL 717 (1123)
T ss_pred ccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHH
Confidence 0 00000 000111122222222 237999999999999999888
Q ss_pred HHHC------CC---CceeccCCCCHHHHHHHHHHhccCCc-cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhc
Q 002040 734 LLKH------GY---PCLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVG 803 (976)
Q Consensus 734 L~~~------~~---~~~~lhg~~~~~~R~~~~~~F~~g~~-~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~G 803 (976)
|... ++ .|..+||.++ .+..++..|+++.. .|||+++++.+|+|+|.|.+||++.++.|...|+|++|
T Consensus 718 L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIG 795 (1123)
T PRK11448 718 LKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLG 795 (1123)
T ss_pred HHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHh
Confidence 7653 22 4567899886 46789999999887 69999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 002040 804 RTGRAG 809 (976)
Q Consensus 804 R~gR~g 809 (976)
|+.|..
T Consensus 796 RgtR~~ 801 (1123)
T PRK11448 796 RATRLC 801 (1123)
T ss_pred hhccCC
Confidence 999963
No 103
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.3e-26 Score=257.76 Aligned_cols=307 Identities=20% Similarity=0.257 Sum_probs=210.1
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEE
Q 002040 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573 (976)
Q Consensus 494 Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~ 573 (976)
.++++.+|..+--+||||.||||||++.-..++..=+..... .++..+-|.-|.|..|..+...+..-+..+|-.|..
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~--~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsY 338 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQS--SSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSY 338 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccC--CCCCeeeecCchHHHHHHHHHHHHHHhccCccceeE
Confidence 355667777777899999999999997544444443332221 124477889999999987765554332224434433
Q ss_pred e--eCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcC----
Q 002040 574 V--YGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIR---- 646 (976)
Q Consensus 574 ~--~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~---- 646 (976)
. |.|+ +...+.|.++|.|.|+..+.+. +.|..+++||||||| +..+.+..-.+..-+-.++
T Consensus 339 qIRfd~t--------i~e~T~IkFMTDGVLLrEi~~D----flL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 339 QIRFDGT--------IGEDTSIKFMTDGVLLREIEND----FLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEEeccc--------cCCCceeEEecchHHHHHHHHh----HhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 2 3332 3346899999999999998765 678999999999999 6655553333332222221
Q ss_pred ------CCCcEEEEeccCcHHHHHHH--HHHcC-CCeEEEeCCcccccCCceEEEEecCcchHHHHHHH---HHHhhhcC
Q 002040 647 ------PDRQTVLFSATFPRQVEILA--RKVLN-KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLE---LLGEWYEK 714 (976)
Q Consensus 647 ------~~~q~i~~SAT~~~~~~~l~--~~~l~-~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~---~l~~~~~~ 714 (976)
...++|+||||+- +..+. ..++. .|..|.+..+.++ +..+|....+.+.+..... .|.+.++.
T Consensus 407 ke~~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kLP~ 481 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKLPP 481 (1172)
T ss_pred hhhcccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcCCC
Confidence 1356899999972 22222 12222 2234454444333 4444544444443332222 23344578
Q ss_pred CcEEEEecCHHHHHHHHHHHHHC---------------------------------------------------------
Q 002040 715 GKILIFVHSQEKCDALFRDLLKH--------------------------------------------------------- 737 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~--------------------------------------------------------- 737 (976)
|.||||+..+.+++.|+..|++.
T Consensus 482 G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~ 561 (1172)
T KOG0926|consen 482 GGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGF 561 (1172)
T ss_pred CcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccc
Confidence 99999999999999999999753
Q ss_pred ------------------------------------------CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 738 ------------------------------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 738 ------------------------------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
.+-|++|++-++...+.+++..-..|..-|+|||++|+
T Consensus 562 ~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAE 641 (1172)
T KOG0926|consen 562 ASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAE 641 (1172)
T ss_pred hhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchh
Confidence 12367788888889999999999999999999999999
Q ss_pred ccCCCCCCcEEEE--------eCCC----------CCHHHHHHHhcccCCCCCccEEEEEecC
Q 002040 776 RGLDVKELELVIN--------FDAP----------NHYEDYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 776 ~GlDi~~v~~VI~--------~d~p----------~s~~~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
+.|+||+|.+||+ ||.- .|.++.-||+|||||+| +|+||.+|+.
T Consensus 642 TSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 642 TSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred cccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999999997 4432 24555679999999998 9999999975
No 104
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=1.8e-24 Score=224.19 Aligned_cols=299 Identities=19% Similarity=0.230 Sum_probs=209.3
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+++|.|..+-..++ +..+.|++|-||+|||.. +.+.+..+..+ |..+.|..|....|..++..++.-+
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 68899987766554 668999999999999986 55555555543 7789999999999999998888754
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHh
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~ 644 (976)
.++.+.++||++.... ...+||||...|+.+-. .+++|||||+|.+.-..-......+-..
T Consensus 169 --~~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~----------aFD~liIDEVDAFP~~~d~~L~~Av~~a 229 (441)
T COG4098 169 --SNCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ----------AFDLLIIDEVDAFPFSDDQSLQYAVKKA 229 (441)
T ss_pred --ccCCeeeEecCCchhc-------cccEEEEehHHHHHHHh----------hccEEEEeccccccccCCHHHHHHHHHh
Confidence 3578889999885432 27899999888876542 3789999999976432222223334445
Q ss_pred cCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccC-CceEEEEecCcchHH------HHHHHHHHhhhc-CCc
Q 002040 645 IRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DITQLVEVRPESDRF------LRLLELLGEWYE-KGK 716 (976)
Q Consensus 645 ~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~-~i~q~~~~~~~~~k~------~~l~~~l~~~~~-~~k 716 (976)
.....-+|++|||++..++.-+.. ++...+.+..+.-..+ .+...+-+.....++ ..|..+|..... +.+
T Consensus 230 rk~~g~~IylTATp~k~l~r~~~~--g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 230 RKKEGATIYLTATPTKKLERKILK--GNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred hcccCceEEEecCChHHHHHHhhh--CCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCc
Confidence 566778999999999875543322 1222223322211111 122222233333333 245566655443 459
Q ss_pred EEEEecCHHHHHHHHHHHHH-CCC-CceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCC--
Q 002040 717 ILIFVHSQEKCDALFRDLLK-HGY-PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP-- 792 (976)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~-~~~-~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p-- 792 (976)
+|||++++...+.++..|.. .+. .+..+|+.. ..|...++.|++|.+.|||+|.+++||+++|+|+++|.-.-.
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~v 385 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRV 385 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCccc
Confidence 99999999999999999954 333 346778753 468888999999999999999999999999999998753332
Q ss_pred CCHHHHHHHhcccCCCC--CccEEEEEe
Q 002040 793 NHYEDYVHRVGRTGRAG--RKGCAITFI 818 (976)
Q Consensus 793 ~s~~~y~Qr~GR~gR~g--~~g~~~~~~ 818 (976)
.+-+..+|.+||+||.- ..|.++.|-
T Consensus 386 fTesaLVQIaGRvGRs~~~PtGdv~FFH 413 (441)
T COG4098 386 FTESALVQIAGRVGRSLERPTGDVLFFH 413 (441)
T ss_pred ccHHHHHHHhhhccCCCcCCCCcEEEEe
Confidence 46788999999999952 346665553
No 105
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.94 E-value=3.5e-26 Score=269.46 Aligned_cols=373 Identities=18% Similarity=0.274 Sum_probs=241.1
Q ss_pred cccccccccchhhhcCCHHHHHHHHhhcCce---eccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh
Q 002040 426 PFRKNFYIEVKEIARMTPEEVSAYRKQLELK---IHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM 502 (976)
Q Consensus 426 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il 502 (976)
|+....|.....+......++..|...-... -.+...-++...|..+...+..+. | ..++.+|.+++++++
T Consensus 310 pY~e~TWE~~~~I~~~~~~~~~~~~~Re~sk~~p~~~~~~~~~rp~~~Kle~qp~~~~-----g-~~LRdyQLeGlNWl~ 383 (1373)
T KOG0384|consen 310 PYEECTWEDAEDIAKKAQEEIEEFQSRENSKTLPNKGCKYRPQRPRFRKLEKQPEYKG-----G-NELRDYQLEGLNWLL 383 (1373)
T ss_pred CcccccccchhhhhhhHHHHHHHHhhhhccccCCCCccccCccchhHHHhhcCccccc-----c-chhhhhhcccchhHH
Confidence 4455667666666666666666655443211 112222233344555544444332 2 678999999999987
Q ss_pred ----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCC
Q 002040 503 ----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS 578 (976)
Q Consensus 503 ----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~ 578 (976)
.++++|++.++|.|||++.+ .+|..|.... ...||. |||||...+ ..|..+|..++ .+++++++|..
T Consensus 384 ~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~---~~~gpf-lvvvplst~-~~W~~ef~~w~---~mn~i~y~g~~ 454 (1373)
T KOG0384|consen 384 YSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSL---QIHGPF-LVVVPLSTI-TAWEREFETWT---DMNVIVYHGNL 454 (1373)
T ss_pred HHHHhcccceehhhcCCCcchHHH-HHHHHHHHhh---hccCCe-EEEeehhhh-HHHHHHHHHHh---hhceeeeecch
Confidence 67899999999999998833 3444444321 124564 899998766 45667777765 67788777776
Q ss_pred ChHHHHHHHh----c-----CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCC
Q 002040 579 GVAQQISELK----R-----GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649 (976)
Q Consensus 579 ~~~~~~~~l~----~-----~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~ 649 (976)
...+.+.... . ..+++++|+..++.--. . ..--.+.+++|||||++-+. ...+...+..+..+.
T Consensus 455 ~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~----~-L~~i~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~ 527 (1373)
T KOG0384|consen 455 ESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA----E-LSKIPWRYLLVDEAHRLKND--ESKLYESLNQFKMNH 527 (1373)
T ss_pred hHHHHHHHHHheecCCccccccceeehhhHHHhccHh----h-hccCCcceeeecHHhhcCch--HHHHHHHHHHhcccc
Confidence 6555554432 1 36899999987743221 1 11124779999999998654 334444455554443
Q ss_pred cEEEEeccCc-HHHHHHHHHH-cCCCeEEEe---------------------------------CCcccccCCceEEE--
Q 002040 650 QTVLFSATFP-RQVEILARKV-LNKPVEIQV---------------------------------GGRSVVNKDITQLV-- 692 (976)
Q Consensus 650 q~i~~SAT~~-~~~~~l~~~~-l~~~~~i~~---------------------------------~~~~~~~~~i~q~~-- 692 (976)
-|++|+||- +.+..|...+ +..|-.+.. ......+....+++
T Consensus 528 -rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrV 606 (1373)
T KOG0384|consen 528 -RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRV 606 (1373)
T ss_pred -eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEe
Confidence 466666642 2333332111 000000000 00000000000110
Q ss_pred -----------------------------------------------Eec-----------------------CcchHHH
Q 002040 693 -----------------------------------------------EVR-----------------------PESDRFL 702 (976)
Q Consensus 693 -----------------------------------------------~~~-----------------------~~~~k~~ 702 (976)
.+. ..+.|+.
T Consensus 607 els~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlV 686 (1373)
T KOG0384|consen 607 ELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLV 686 (1373)
T ss_pred ehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEE
Confidence 000 1122223
Q ss_pred HHHHHHHhhhcC-CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhc---cCCccEEEecCcccccC
Q 002040 703 RLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK---SNVCNLLIATSVAARGL 778 (976)
Q Consensus 703 ~l~~~l~~~~~~-~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~---~g~~~vLVaT~v~~~Gl 778 (976)
.|-.+|..+... .+||||.+.+.+++.|+.||...+|++..|.|.+....|..+|..|. +..+.||+||.+++.||
T Consensus 687 LLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGI 766 (1373)
T KOG0384|consen 687 LLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGI 766 (1373)
T ss_pred eHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccc
Confidence 333444444444 49999999999999999999999999999999999999999999998 45689999999999999
Q ss_pred CCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccE--EEEEecCC
Q 002040 779 DVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISEE 821 (976)
Q Consensus 779 Di~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~--~~~~~~~~ 821 (976)
|+..+++||+||..|||.+-+|+..||+|+||+.. +|.|+|..
T Consensus 767 NLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 767 NLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred cccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 99999999999999999999999999999999765 56678765
No 106
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.93 E-value=1.5e-24 Score=257.65 Aligned_cols=313 Identities=20% Similarity=0.276 Sum_probs=238.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH-HHhhcC
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMG 568 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~-~~~~~~ 568 (976)
.+..+.+.|.+|.+++.++|.|+||+|||++.-..++.+..... ....+++..|.|--|.-+++.+.. .+...|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 45778899999999999999999999999998888888776542 345578888999888888776653 233344
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcCC
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~~ 647 (976)
-.|..-++..+ .....+.+++||.|.|+..|... ..+..+++||+||+| +-.+.+|.-.+...+-..+|
T Consensus 249 ~~VGYqvrl~~------~~s~~t~L~fcTtGvLLr~L~~~----~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLES------KRSRETRLLFCTTGVLLRRLQSD----PTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeec------ccCCceeEEEecHHHHHHHhccC----cccccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 44444333321 12234899999999999998763 578899999999999 77888898888888888899
Q ss_pred CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCC----------------ceEE------------EEecCc--
Q 002040 648 DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD----------------ITQL------------VEVRPE-- 697 (976)
Q Consensus 648 ~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~----------------i~q~------------~~~~~~-- 697 (976)
+.++|+||||+... ++..|++....+.+.+.+++... ..+. +.+...
T Consensus 319 ~LkvILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 395 (924)
T KOG0920|consen 319 DLKVILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEI 395 (924)
T ss_pred CceEEEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccc
Confidence 99999999999743 66777777777777776654221 0000 000011
Q ss_pred -chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC-------CCCceeccCCCCHHHHHHHHHHhccCCccEEE
Q 002040 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (976)
Q Consensus 698 -~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 769 (976)
..-+..|+..|......|.||||.++...+..+.+.|... .+-+.++|+.|+..++..++.....|..+||+
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIl 475 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIIL 475 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhh
Confidence 1122333444444334689999999999999999999652 36688999999999999999999999999999
Q ss_pred ecCcccccCCCCCCcEEEE--------eCCCC----------CHHHHHHHhcccCCCCCccEEEEEecCC
Q 002040 770 ATSVAARGLDVKELELVIN--------FDAPN----------HYEDYVHRVGRTGRAGRKGCAITFISEE 821 (976)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~--------~d~p~----------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~ 821 (976)
||++|+++|.|++|-+||+ ||+-. +-++..||.|||||. +.|.||.+|+..
T Consensus 476 aTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 476 ATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRS 544 (924)
T ss_pred hhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechh
Confidence 9999999999999999997 55533 455667999999998 699999999864
No 107
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=2.9e-24 Score=257.73 Aligned_cols=315 Identities=20% Similarity=0.261 Sum_probs=230.6
Q ss_pred HHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 483 RKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 483 ~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
..++|. |-++|++++..|..|.+|+++||||+|||+++-.++...+.. |.++++++|..+|.+|.+..|..
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHH
Confidence 446664 889999999999999999999999999999977776665543 45699999999999999999887
Q ss_pred HHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHH
Q 002040 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (976)
Q Consensus 563 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il 642 (976)
.+...--.+.+++|.. .+..++.++|+|.+.|.+++.... ..+..+.+||+||+|.|.+..-+..+..++
T Consensus 185 ~fgdv~~~vGL~TGDv-------~IN~~A~clvMTTEILRnMlyrg~---~~~~~i~~ViFDEvHyi~D~eRG~VWEE~I 254 (1041)
T COG4581 185 KFGDVADMVGLMTGDV-------SINPDAPCLVMTTEILRNMLYRGS---ESLRDIEWVVFDEVHYIGDRERGVVWEEVI 254 (1041)
T ss_pred Hhhhhhhhccceecce-------eeCCCCceEEeeHHHHHHHhccCc---ccccccceEEEEeeeeccccccchhHHHHH
Confidence 6543322245566655 345678999999999999987764 567889999999999999998888999999
Q ss_pred HhcCCCCcEEEEeccCcHHHHHHHHHHc---CCCeEEEeCCcccccCCceEEEEe-------cCcchH------------
Q 002040 643 QNIRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQVGGRSVVNKDITQLVEV-------RPESDR------------ 700 (976)
Q Consensus 643 ~~~~~~~q~i~~SAT~~~~~~~l~~~~l---~~~~~i~~~~~~~~~~~i~q~~~~-------~~~~~k------------ 700 (976)
-.++...++|+||||+|+..+ +...+. ..|+.+... ...+.++.+++.. .....+
T Consensus 255 i~lP~~v~~v~LSATv~N~~E-F~~Wi~~~~~~~~~vv~t--~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAEE-FAEWIQRVHSQPIHVVST--EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHHH-HHHHHHhccCCCeEEEee--cCCCCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 999999999999999998754 333222 233332221 1111122222211 111110
Q ss_pred -----------------------------------HHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC--------
Q 002040 701 -----------------------------------FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------- 737 (976)
Q Consensus 701 -----------------------------------~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~-------- 737 (976)
...++..|.. ...-++|+||-++..|+.++..|...
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~-~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK-DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhh-hcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 0111111111 11238999999999998888776521
Q ss_pred --------------------CCC-------------ceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCc
Q 002040 738 --------------------GYP-------------CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (976)
Q Consensus 738 --------------------~~~-------------~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~ 784 (976)
+++ ++++|++|=+..+..+...|..|-++||+||.+++.|+|.|.-+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 221 45789999999999999999999999999999999999999776
Q ss_pred EEEE----eC----CCCCHHHHHHHhcccCCCCC--ccEEEEEecC
Q 002040 785 LVIN----FD----APNHYEDYVHRVGRTGRAGR--KGCAITFISE 820 (976)
Q Consensus 785 ~VI~----~d----~p~s~~~y~Qr~GR~gR~g~--~g~~~~~~~~ 820 (976)
+|+- ++ .+-++..|.|+.|||||.|. .|.+++.-.+
T Consensus 491 vv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 491 VVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred eeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 6662 22 24468899999999999886 4888777443
No 108
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=248.82 Aligned_cols=308 Identities=20% Similarity=0.284 Sum_probs=229.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
.+-|+|.++|..|-.+..+|+.|.|.+|||.++-.+|...+.. ..+|++..|-.+|.+|-|.++..-++..|
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~--------kQRVIYTSPIKALSNQKYREl~~EF~DVG 200 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE--------KQRVIYTSPIKALSNQKYRELLEEFKDVG 200 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh--------cCeEEeeChhhhhcchhHHHHHHHhcccc
Confidence 4779999999999999999999999999999977777666554 45799999999999999999887665544
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCC
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~ 648 (976)
+.+|... +...+-.+|+|.+.|..+|.+++ --+..+.+||+||+|.|-+...+-.+...+-.++.+
T Consensus 201 ----LMTGDVT-------InP~ASCLVMTTEILRsMLYRGS---EvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~ 266 (1041)
T KOG0948|consen 201 ----LMTGDVT-------INPDASCLVMTTEILRSMLYRGS---EVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDN 266 (1041)
T ss_pred ----eeeccee-------eCCCCceeeeHHHHHHHHHhccc---hHhheeeeEEeeeehhccccccceeeeeeEEecccc
Confidence 4556553 34557889999999999998765 346779999999999998887777777777788999
Q ss_pred CcEEEEeccCcHHHHHHHHHHc---CCCeEEEeCCcccccCCceEEE---------EecCc-----chHHHHHHHHHHhh
Q 002040 649 RQTVLFSATFPRQVEILARKVL---NKPVEIQVGGRSVVNKDITQLV---------EVRPE-----SDRFLRLLELLGEW 711 (976)
Q Consensus 649 ~q~i~~SAT~~~~~~~l~~~~l---~~~~~i~~~~~~~~~~~i~q~~---------~~~~~-----~~k~~~l~~~l~~~ 711 (976)
.+.+++|||+|+..+ ++.+.+ ..|..+.+ ..+.+.++.+++ .+++. .+.|......|...
T Consensus 267 vr~VFLSATiPNA~q-FAeWI~~ihkQPcHVVY--TdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 267 VRFVFLSATIPNARQ-FAEWICHIHKQPCHVVY--TDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred ceEEEEeccCCCHHH-HHHHHHHHhcCCceEEe--ecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 999999999998765 444332 34433222 122222222221 11111 12233333222211
Q ss_pred -----------------------------------h--cCCcEEEEecCHHHHHHHHHHHHHCC----------------
Q 002040 712 -----------------------------------Y--EKGKILIFVHSQEKCDALFRDLLKHG---------------- 738 (976)
Q Consensus 712 -----------------------------------~--~~~kvLIF~~s~~~~~~l~~~L~~~~---------------- 738 (976)
. .-.++|||+-++++|+.++-.+.+..
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 1 12489999999999999988775541
Q ss_pred -----------------------CCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eCC
Q 002040 739 -----------------------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA 791 (976)
Q Consensus 739 -----------------------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d~ 791 (976)
-.++++|||+-+-.++-+.-.|+.|-++||+||..++.|||.|.-++|+- ||-
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG 503 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDG 503 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCC
Confidence 13678999999999999999999999999999999999999997766663 222
Q ss_pred ----CCCHHHHHHHhcccCCCCC--ccEEEEEecCC
Q 002040 792 ----PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (976)
Q Consensus 792 ----p~s~~~y~Qr~GR~gR~g~--~g~~~~~~~~~ 821 (976)
+.+.-.|+|+.|||||-|- .|.|++++++.
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 2356689999999999885 59999998753
No 109
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.92 E-value=4.7e-24 Score=242.10 Aligned_cols=328 Identities=20% Similarity=0.287 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.++|+|..++.|+. ++...|+..+||.|||++. +..|..|.....+ ...+|||||. .+..||.++|..|.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 47799999999986 5667899999999999983 3444444433211 2458999996 46689999999987
Q ss_pred hhcCcEEEEeeCCCCh--------HHHH-----HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc
Q 002040 565 KVMGVRCVPVYGGSGV--------AQQI-----SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~--------~~~~-----~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
.. ++|.+++|.... .... ........|+|+|+..|.-. . ....-..|.|+|+||.|++-+
T Consensus 279 p~--~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~----~-d~l~~~~W~y~ILDEGH~IrN 351 (923)
T KOG0387|consen 279 PP--FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ----G-DDLLGILWDYVILDEGHRIRN 351 (923)
T ss_pred cc--eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----C-cccccccccEEEecCcccccC
Confidence 54 566666665442 0111 11122467999998876321 1 112234589999999999876
Q ss_pred cCCchHHHHHHHhcCCCCcEEEEeccCc-HHHHHHHHHH---c----------CC--CeEEEeCCcccc-----------
Q 002040 632 MGFEPQITRIVQNIRPDRQTVLFSATFP-RQVEILARKV---L----------NK--PVEIQVGGRSVV----------- 684 (976)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~i~~SAT~~-~~~~~l~~~~---l----------~~--~~~i~~~~~~~~----------- 684 (976)
.. .++...+..++. .+-|++|+||- +.+..|...| + .. ...|.+++....
T Consensus 352 pn--s~islackki~T-~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykc 428 (923)
T KOG0387|consen 352 PN--SKISLACKKIRT-VHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKC 428 (923)
T ss_pred Cc--cHHHHHHHhccc-cceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHH
Confidence 53 344444445533 44566677742 2222211100 0 00 001111110000
Q ss_pred -------------------------cCCceEEE-----------------------------------------------
Q 002040 685 -------------------------NKDITQLV----------------------------------------------- 692 (976)
Q Consensus 685 -------------------------~~~i~q~~----------------------------------------------- 692 (976)
+..-.+++
T Consensus 429 a~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl 508 (923)
T KOG0387|consen 429 AVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL 508 (923)
T ss_pred HHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc
Confidence 00000000
Q ss_pred ---------------EecCcchHHHHHHHHHHhhhcCC-cEEEEecCHHHHHHHHHHHH-HCCCCceeccCCCCHHHHHH
Q 002040 693 ---------------EVRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLL-KHGYPCLSLHGAKDQTDRES 755 (976)
Q Consensus 693 ---------------~~~~~~~k~~~l~~~l~~~~~~~-kvLIF~~s~~~~~~l~~~L~-~~~~~~~~lhg~~~~~~R~~ 755 (976)
-....+.|+..+..+|..|...| ++|+|.+++.+++.|...|. ..||.++.+.|.++...|..
T Consensus 509 l~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 509 LDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred ccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 01112457888888888888654 99999999999999999999 57999999999999999999
Q ss_pred HHHHhccCC--ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEE--EEecCC---CcCchHH
Q 002040 756 TISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAI--TFISEE---DAKYSPD 828 (976)
Q Consensus 756 ~~~~F~~g~--~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~--~~~~~~---d~~~~~~ 828 (976)
++..|+++. .-+|++|.|++-|||+.+++-||+|||.|||++-.|..-|+.|.||+..|+ .|++.. +..|..+
T Consensus 589 lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIEEkiY~rQ 668 (923)
T KOG0387|consen 589 LVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIEEKIYHRQ 668 (923)
T ss_pred HHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHHHHHHHHH
Confidence 999999775 458899999999999999999999999999999999999999999976554 455542 3344555
Q ss_pred HHHH
Q 002040 829 LVKA 832 (976)
Q Consensus 829 i~~~ 832 (976)
|.+.
T Consensus 669 I~Kq 672 (923)
T KOG0387|consen 669 IFKQ 672 (923)
T ss_pred HHHH
Confidence 5554
No 110
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=2.7e-23 Score=223.44 Aligned_cols=329 Identities=19% Similarity=0.258 Sum_probs=237.1
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
.+..|...+.++...+.|++..-...+..+...+..+.+++-++++|+||||||++.-..++...... ...|.
T Consensus 23 ~~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~ 95 (699)
T KOG0925|consen 23 AINPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVA 95 (699)
T ss_pred hcCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------cccee
Confidence 36778888889888888887554444566666777777888999999999999987544445444432 13456
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
...|.|..|+++ ..+++..+.+.+.--+|.+...+.+.. ..+-+-+||.+.|+...... ..|..+++||+|
T Consensus 96 CTQprrvaamsv---a~RVadEMDv~lG~EVGysIrfEdC~~--~~T~Lky~tDgmLlrEams~----p~l~~y~viiLD 166 (699)
T KOG0925|consen 96 CTQPRRVAAMSV---AQRVADEMDVTLGEEVGYSIRFEDCTS--PNTLLKYCTDGMLLREAMSD----PLLGRYGVIILD 166 (699)
T ss_pred ecCchHHHHHHH---HHHHHHHhccccchhccccccccccCC--hhHHHHHhcchHHHHHHhhC----cccccccEEEec
Confidence 777999988866 455666788888777787766665321 22445689999988766544 468899999999
Q ss_pred Ccc-cccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHH
Q 002040 625 EAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLR 703 (976)
Q Consensus 625 Eah-~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~ 703 (976)
||| +.+..+....+.+-+..-+|+.++|+||||+-.. .+..|+.++..+.+.+. ..+..++.-....+.+..
T Consensus 167 eahERtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg~----~PvEi~Yt~e~erDylEa 239 (699)
T KOG0925|consen 167 EAHERTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE---KFQRYFGNAPLLAVPGT----HPVEIFYTPEPERDYLEA 239 (699)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhCCCceEEEeecccchH---HHHHHhCCCCeeecCCC----CceEEEecCCCChhHHHH
Confidence 999 6555554444444444456899999999997543 45667777766666652 123333444445566666
Q ss_pred HHHHHHhhh---cCCcEEEEecCHHHHHHHHHHHHHC---------CCCceeccCCCCHHHHHHHHHHhc---cC--Ccc
Q 002040 704 LLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKH---------GYPCLSLHGAKDQTDRESTISDFK---SN--VCN 766 (976)
Q Consensus 704 l~~~l~~~~---~~~kvLIF~~s~~~~~~l~~~L~~~---------~~~~~~lhg~~~~~~R~~~~~~F~---~g--~~~ 766 (976)
.+..+.+.+ ..|.+|||.++.++++..|..+... .+.|+.+| +.++..+++... +| ..+
T Consensus 240 airtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rk 315 (699)
T KOG0925|consen 240 AIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRK 315 (699)
T ss_pred HHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccce
Confidence 665555443 4689999999999999999888742 35678888 444555555443 23 357
Q ss_pred EEEecCcccccCCCCCCcEEEEeCC------------------CCCHHHHHHHhcccCCCCCccEEEEEecCC
Q 002040 767 LLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (976)
Q Consensus 767 vLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~ 821 (976)
|+|+|++++..|.|++|.+||+.++ |.|..+..||.||+||+ .+|.|+.+|++.
T Consensus 316 vVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 316 VVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 9999999999999999999997443 77888899999999998 599999999864
No 111
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.91 E-value=2.2e-23 Score=210.76 Aligned_cols=165 Identities=36% Similarity=0.619 Sum_probs=141.2
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcE
Q 002040 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (976)
Q Consensus 491 ~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~ 570 (976)
||+|.++|+.+.+++++|++||||+|||++|+++++..+... ....+||++|+++|+.|++..+..++...++.
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 699999999999999999999999999999999999988763 23489999999999999999999998888889
Q ss_pred EEEeeCCCChH-HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC--
Q 002040 571 CVPVYGGSGVA-QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-- 647 (976)
Q Consensus 571 ~~~~~gg~~~~-~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~-- 647 (976)
+..++|+.... .....+..+++|+|+||+.|..++... .. ++.++++|||||+|.+..+++...+..++..+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--~~-~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~ 151 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG--KI-NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK 151 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT--SS-TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT
T ss_pred cccccccccccccccccccccccccccCcchhhcccccc--cc-ccccceeeccCcccccccccHHHHHHHHHHHhcCCC
Confidence 99999999866 444455567999999999999998762 22 5666999999999999988888888888888733
Q ss_pred CCcEEEEeccCcHHHHH
Q 002040 648 DRQTVLFSATFPRQVEI 664 (976)
Q Consensus 648 ~~q~i~~SAT~~~~~~~ 664 (976)
..++|++|||+++.++.
T Consensus 152 ~~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 152 NIQIILLSATLPSNVEK 168 (169)
T ss_dssp TSEEEEEESSSTHHHHH
T ss_pred CCcEEEEeeCCChhHhh
Confidence 58999999999976654
No 112
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=244.23 Aligned_cols=348 Identities=22% Similarity=0.250 Sum_probs=242.0
Q ss_pred cccCCCCHHHHHHHHHcCCCCCcHHHHHHH--HHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 469 WHQTGLTSKIMETIRKLNYEKPMPIQAQAL--PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 469 ~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i--~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
+...+++....-.....|+.+++.+|.+++ |.++.++++|+.+||+.|||+++-+-|+..+.-. ...++++
T Consensus 203 ~a~~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~lli 275 (1008)
T KOG0950|consen 203 FAKRLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLI 275 (1008)
T ss_pred hhhcCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEe
Confidence 333334444444456789999999999997 6688999999999999999999999888877643 3468999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
.|....+..-...+..|+..+|+.+-+.+|..+.... .....|.|||.+.-..++...- ....+..+++|||||.
T Consensus 276 lp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~li-e~g~~~~~g~vvVdEl 350 (1008)
T KOG0950|consen 276 LPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLI-EQGRLDFLGMVVVDEL 350 (1008)
T ss_pred cceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHH-hcCCccccCcEEEeee
Confidence 9999888888888889999999999888876554322 2336899999987543332210 1135777999999999
Q ss_pred ccccccCCchHHHHHHHhc-----CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccC-CceEEEEecCc-ch
Q 002040 627 DRMFDMGFEPQITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DITQLVEVRPE-SD 699 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~-----~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~-~i~q~~~~~~~-~~ 699 (976)
|.+.+.+.+..+..++..+ ....|+|+||||+|+.- +...++..-++..- .++++.. .+..-..+... ..
T Consensus 351 hmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~--lL~~~L~A~~y~t~-fRPv~L~E~ik~G~~i~~~~r~ 427 (1008)
T KOG0950|consen 351 HMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS--LLQDWLDAFVYTTR-FRPVPLKEYIKPGSLIYESSRN 427 (1008)
T ss_pred eeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH--HHHHHhhhhheecc-cCcccchhccCCCcccccchhh
Confidence 9999888777666655432 33467999999998752 33333332222110 0111000 00000000000 00
Q ss_pred HH-----------------HHHHHHHHhhhcCC-cEEEEecCHHHHHHHHHHHHHC------------------------
Q 002040 700 RF-----------------LRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKH------------------------ 737 (976)
Q Consensus 700 k~-----------------~~l~~~l~~~~~~~-kvLIF~~s~~~~~~l~~~L~~~------------------------ 737 (976)
+. ..++.++.+..+.+ .+||||+++..|+.++..+...
T Consensus 428 ~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr 507 (1008)
T KOG0950|consen 428 KVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLR 507 (1008)
T ss_pred HHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhh
Confidence 00 12223333333334 5999999999999888665321
Q ss_pred --------------CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEe----CCCCCHHHHH
Q 002040 738 --------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINF----DAPNHYEDYV 799 (976)
Q Consensus 738 --------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~----d~p~s~~~y~ 799 (976)
.+.+..+|.+++..+|..+-..|++|.+.||+||+.++.|+|+|...++|-+ ....+...|.
T Consensus 508 ~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~Yk 587 (1008)
T KOG0950|consen 508 RIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYK 587 (1008)
T ss_pred cCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHH
Confidence 3567889999999999999999999999999999999999999998888843 2244678999
Q ss_pred HHhcccCCCCC--ccEEEEEecCCCcCchHHHHH
Q 002040 800 HRVGRTGRAGR--KGCAITFISEEDAKYSPDLVK 831 (976)
Q Consensus 800 Qr~GR~gR~g~--~g~~~~~~~~~d~~~~~~i~~ 831 (976)
|++|||||+|- .|.+++.+.+.+......++.
T Consensus 588 QM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~ 621 (1008)
T KOG0950|consen 588 QMVGRAGRTGIDTLGDSILIIKSSEKKRVRELVN 621 (1008)
T ss_pred hhhhhhhhcccccCcceEEEeeccchhHHHHHHh
Confidence 99999999874 588999998877655555544
No 113
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=5.7e-22 Score=235.38 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=114.1
Q ss_pred cCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc
Q 002040 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (976)
Q Consensus 695 ~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v 773 (976)
.....|+..++..|.... .+.++||||+|+..++.|+..|...|+++..||+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 344568888888886654 3569999999999999999999999999999997 6889999999999999999999999
Q ss_pred ccccCCCC---CCc-----EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcC
Q 002040 774 AARGLDVK---ELE-----LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (976)
Q Consensus 774 ~~~GlDi~---~v~-----~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~ 824 (976)
|+||+||+ +|. +||++..|.+...|+|++||+||.|.+|.+++|++.+|..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999999 453 4588999999999999999999999999999999987654
No 114
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.89 E-value=5.7e-21 Score=228.26 Aligned_cols=130 Identities=21% Similarity=0.332 Sum_probs=117.3
Q ss_pred cCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc
Q 002040 695 RPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (976)
Q Consensus 695 ~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v 773 (976)
.+...++..|+..|..+.. +.++||||+++..++.|+.+|...|+.+..+||++++.+|..++..|+.|.+.|||||++
T Consensus 422 ~~~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 422 RPTDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred eeccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 3445677788888877654 458999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeC-----CCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCc
Q 002040 774 AARGLDVKELELVINFD-----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (976)
Q Consensus 774 ~~~GlDi~~v~~VI~~d-----~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 825 (976)
+++|+|+|.+++||+++ .|.+...|+|++|||||. ..|.|++|++..+..+
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~ 557 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSM 557 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHH
Confidence 99999999999999988 799999999999999998 5899999998765443
No 115
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.89 E-value=8.8e-23 Score=221.90 Aligned_cols=346 Identities=19% Similarity=0.215 Sum_probs=249.8
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEc-CCCCch--HHHHHHHHHHHHhcCCCCCCCC-----------------------
Q 002040 486 NYEKPMPIQAQALPVIMSGRDCIGVA-KTGSGK--TLAFVLPMLRHIKDQPPVAAGD----------------------- 539 (976)
Q Consensus 486 ~~~~p~~~Q~~~i~~il~g~d~i~~a-~TGsGK--T~~~~l~il~~l~~~~~~~~~~----------------------- 539 (976)
.-..+|+.|.+.+..+.+++|++..- ..+.|+ +-+|++++|+|+.+.+....++
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 34578999999999999999998763 345565 5679999999998653322221
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCc---------EEEE---------------------eeCCCChHHHHHH---
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGV---------RCVP---------------------VYGGSGVAQQISE--- 586 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~---------~~~~---------------------~~gg~~~~~~~~~--- 586 (976)
.|+||||||+|+.|..+.+.+..++....- ++.. ++.|+........
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 389999999999999999988887422211 0111 1222222211111
Q ss_pred ------Hh---cCCeEEEeCchhHHHHHHhcCCcc---cccCCceEEEecCcccccccCCchHHHHHHHhcCCC------
Q 002040 587 ------LK---RGTEIVVCTPGRMIDILCTSGGKI---TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD------ 648 (976)
Q Consensus 587 ------l~---~~~~Iiv~Tp~~L~~~l~~~~~~~---~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~------ 648 (976)
|- ...+|+||+|-.|..+|...+.+. ..|+++.++|||.||.|+ ++.|..+..|+.+++..
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l-~QNwEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML-MQNWEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH-HhhHHHHHHHHHHhhcCcccccC
Confidence 11 157999999999988887444332 347889999999999776 56788888888876432
Q ss_pred ------------------CcEEEEeccCcHHHHHHHHHHcCCCeE----EEeCC---cccccCCceEEE---E----ecC
Q 002040 649 ------------------RQTVLFSATFPRQVEILARKVLNKPVE----IQVGG---RSVVNKDITQLV---E----VRP 696 (976)
Q Consensus 649 ------------------~q~i~~SAT~~~~~~~l~~~~l~~~~~----i~~~~---~~~~~~~i~q~~---~----~~~ 696 (976)
+|+|+||+-..+.+..++..++.+..- -.+.. ...+...+.|.+ . ...
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 589999999888888888877765421 11111 111122233333 2 223
Q ss_pred cchHHHHHHHHHHhhhc---CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc
Q 002040 697 ESDRFLRLLELLGEWYE---KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~~---~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v 773 (976)
.+.+|..++..|...+. ...+|||+|+.-+...+.+++++.++.++.||.+.+...-.++...|..|...||+.|.-
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER 611 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTER 611 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehh
Confidence 46678777766543332 247899999999999999999999999999999999999999999999999999999997
Q ss_pred cc--ccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC---C----CccEEEEEecCCCcCchHHHHHH
Q 002040 774 AA--RGLDVKELELVINFDAPNHYEDYVHRVGRTGRA---G----RKGCAITFISEEDAKYSPDLVKA 832 (976)
Q Consensus 774 ~~--~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~---g----~~g~~~~~~~~~d~~~~~~i~~~ 832 (976)
+. +..+|.+|..||+|.+|.+|..|...+--.+|+ | ..-+|.++|+..|...+..|+-.
T Consensus 612 ~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivGt 679 (698)
T KOG2340|consen 612 AHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVGT 679 (698)
T ss_pred hhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhhH
Confidence 76 889999999999999999999997665433332 2 23589999999888777777643
No 116
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.88 E-value=9.8e-22 Score=240.22 Aligned_cols=337 Identities=20% Similarity=0.237 Sum_probs=220.8
Q ss_pred CCcHHHHHHHHHHhcC---C-CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIMSG---R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g---~-d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.+++.|..++..++.. . .+++.||||+|||++.+++++..+... ....++++++.|++.++.+++..+..++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~ 270 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIF 270 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhh
Confidence 3478999999888754 4 688999999999999999988777653 1257889999999999999999999877
Q ss_pred hhcCcEEEEeeCCCChHHHHHH-----H---------hcCCeEEEeCchhHHHHHHhcCCcc-cccCCceEEEecCcccc
Q 002040 565 KVMGVRCVPVYGGSGVAQQISE-----L---------KRGTEIVVCTPGRMIDILCTSGGKI-TNLRRVTYLVMDEADRM 629 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~-----l---------~~~~~Iiv~Tp~~L~~~l~~~~~~~-~~l~~~~~vVlDEah~~ 629 (976)
...++....+.|.......... + .....++++||-.+........... ..+-..+++|+||+|.+
T Consensus 271 ~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 271 GLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred cccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 6554433322332221111000 0 0013455555554433211111111 00112468999999977
Q ss_pred cccCCchHHHHHHHhc-CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccc---ccCCceEEEEecCcchH-HHHH
Q 002040 630 FDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV---VNKDITQLVEVRPESDR-FLRL 704 (976)
Q Consensus 630 ~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~---~~~~i~q~~~~~~~~~k-~~~l 704 (976)
....-...+..++..+ ..+..+|+||||+|+.+.......+.....+....... ....+.+.......... ...+
T Consensus 351 ~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 430 (733)
T COG1203 351 ADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELI 430 (733)
T ss_pred cccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhh
Confidence 6653333344444333 34678999999999999888888877665444321100 01111111000000000 1112
Q ss_pred HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHh----ccCCccEEEecCcccccCCC
Q 002040 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF----KSNVCNLLIATSVAARGLDV 780 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F----~~g~~~vLVaT~v~~~GlDi 780 (976)
.........+++++|.|||+..|..++..|+..+..++.|||.+...+|...+..+ +.+...|+|||++++.||||
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDi 510 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDI 510 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecc
Confidence 22222333467999999999999999999999877899999999999999888754 45678899999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHhcccCCCC--CccEEEEEecCCCcCchHHHHHH
Q 002040 781 KELELVINFDAPNHYEDYVHRVGRTGRAG--RKGCAITFISEEDAKYSPDLVKA 832 (976)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g--~~g~~~~~~~~~d~~~~~~i~~~ 832 (976)
. .+++|-= +..+...+||+||++|-| ..|.++++.......+.......
T Consensus 511 d-fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~ 561 (733)
T COG1203 511 D-FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEK 561 (733)
T ss_pred c-cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhc
Confidence 5 7777633 344778999999999999 67888888776655555444443
No 117
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.88 E-value=1.3e-21 Score=229.96 Aligned_cols=321 Identities=20% Similarity=0.277 Sum_probs=213.7
Q ss_pred CCcHHHHHHHHHHh---c-CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCC-eEEEEccCHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIM---S-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP-VGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 489 ~p~~~Q~~~i~~il---~-g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~-~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.++.||+++++|+. . +-+.|+|..||.|||++.+..+.......+.......+ -.|||||. .|+--|..++.+|
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 35679999999875 2 34899999999999999766655554443211111223 37999995 6999999999999
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHH
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~ 643 (976)
+.. +++...+|+......+..-.+.++|||+++..+.+-+.. ..-..|.|+|+||.|-|-+. ...+...+.
T Consensus 1054 ~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~-----l~~~~wNYcVLDEGHVikN~--ktkl~kavk 1124 (1549)
T KOG0392|consen 1054 FPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY-----LIKIDWNYCVLDEGHVIKNS--KTKLTKAVK 1124 (1549)
T ss_pred cch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH-----HHhcccceEEecCcceecch--HHHHHHHHH
Confidence 876 566666666554444444444689999999988644322 12235789999999977543 334555556
Q ss_pred hcCCCCcEEEEeccCcH-HHHHH---HHHHcC--------------CC--------------------------------
Q 002040 644 NIRPDRQTVLFSATFPR-QVEIL---ARKVLN--------------KP-------------------------------- 673 (976)
Q Consensus 644 ~~~~~~q~i~~SAT~~~-~~~~l---~~~~l~--------------~~-------------------------------- 673 (976)
.++.+. -+++|+||-. ++..+ +..+|+ .|
T Consensus 1125 qL~a~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~ 1203 (1549)
T KOG0392|consen 1125 QLRANH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFL 1203 (1549)
T ss_pred HHhhcc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHH
Confidence 665544 3566777521 11100 000000 00
Q ss_pred ------------------------------------------eEEEeCCcccccC----CceEE------------EEe-
Q 002040 674 ------------------------------------------VEIQVGGRSVVNK----DITQL------------VEV- 694 (976)
Q Consensus 674 ------------------------------------------~~i~~~~~~~~~~----~i~q~------------~~~- 694 (976)
+...+.+...... .|.|. +..
T Consensus 1204 LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt 1283 (1549)
T KOG0392|consen 1204 LRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLT 1283 (1549)
T ss_pred HHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeC
Confidence 0000000000000 00000 000
Q ss_pred ----------------------cCcchHHHHHHHHHHhhh---------------cCCcEEEEecCHHHHHHHHHHHHHC
Q 002040 695 ----------------------RPESDRFLRLLELLGEWY---------------EKGKILIFVHSQEKCDALFRDLLKH 737 (976)
Q Consensus 695 ----------------------~~~~~k~~~l~~~l~~~~---------------~~~kvLIF~~s~~~~~~l~~~L~~~ 737 (976)
.....|+.+|-++|.... .+.++||||+-+.+++.+.+.|.+.
T Consensus 1284 ~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~ 1363 (1549)
T KOG0392|consen 1284 PVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKK 1363 (1549)
T ss_pred CCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhh
Confidence 011335555666665442 1248999999999999999999775
Q ss_pred ---CCCceeccCCCCHHHHHHHHHHhccC-CccEEE-ecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCcc
Q 002040 738 ---GYPCLSLHGAKDQTDRESTISDFKSN-VCNLLI-ATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKG 812 (976)
Q Consensus 738 ---~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLV-aT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g 812 (976)
.+..+.+.|..++.+|.++...|+++ .++||+ +|.|++.|||+.++++||++.-.|||-.-+|.+.||+|.||+-
T Consensus 1364 ~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKr 1443 (1549)
T KOG0392|consen 1364 YMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKR 1443 (1549)
T ss_pred hcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCce
Confidence 45566899999999999999999999 788765 5679999999999999999999999999999999999999986
Q ss_pred E--EEEEecC
Q 002040 813 C--AITFISE 820 (976)
Q Consensus 813 ~--~~~~~~~ 820 (976)
. +|.|++.
T Consensus 1444 vVNVyRlItr 1453 (1549)
T KOG0392|consen 1444 VVNVYRLITR 1453 (1549)
T ss_pred eeeeeeehhc
Confidence 5 4556664
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=1.1e-20 Score=218.79 Aligned_cols=321 Identities=18% Similarity=0.200 Sum_probs=225.3
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|++.|.-+.-.+++| -|+.+.||+|||+++++|++..... |..|.||+|+--||.|-++++..++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 564 4889999888888876 4778999999999999998877653 6678999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcC---CcccccCCceEEEecCccccc-ccC------
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DMG------ 633 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~---~~~~~l~~~~~vVlDEah~~~-~~~------ 633 (976)
..+|+.|.++.++.+..+....+ .|+|+++|..-| .++|..+- ........+.++||||+|.|+ |..
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiI 221 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVL 221 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceee
Confidence 99999999999988766554444 489999998875 23332221 011234568899999999763 100
Q ss_pred --------CchHHHHHHHhcCCC---------------------------------------------------------
Q 002040 634 --------FEPQITRIVQNIRPD--------------------------------------------------------- 648 (976)
Q Consensus 634 --------f~~~i~~il~~~~~~--------------------------------------------------------- 648 (976)
....+..++..+...
T Consensus 222 Sg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d 301 (764)
T PRK12326 222 AGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRD 301 (764)
T ss_pred eCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 000111111111110
Q ss_pred -------------------------------------------------------------CcEEEEeccCcHHHHHHHH
Q 002040 649 -------------------------------------------------------------RQTVLFSATFPRQVEILAR 667 (976)
Q Consensus 649 -------------------------------------------------------------~q~i~~SAT~~~~~~~l~~ 667 (976)
..+.+||+|.......+..
T Consensus 302 ~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~ 381 (764)
T PRK12326 302 VHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQ 381 (764)
T ss_pred CcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHH
Confidence 1245666665544443333
Q ss_pred HHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccC
Q 002040 668 KVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (976)
Q Consensus 668 ~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg 746 (976)
.| +-++.+.+...+...... ....+.....|+..++..+...+. +.||||.|.++...+.|+..|.+.|+++..|++
T Consensus 382 iY-~l~Vv~IPtnkp~~R~d~-~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNA 459 (764)
T PRK12326 382 FY-DLGVSVIPPNKPNIREDE-ADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNA 459 (764)
T ss_pred Hh-CCcEEECCCCCCceeecC-CCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeecc
Confidence 33 323322222222211111 112344566788888888877654 459999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHhccCC-ccEEEecCcccccCCCC---------------CCcEEEEeCCCCCHHHHHHHhcccCCCCC
Q 002040 747 AKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVK---------------ELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (976)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~-~~vLVaT~v~~~GlDi~---------------~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~ 810 (976)
.-...+-..+- ..|. -.|.|||++|+||.||. +=-+||-...+.|--.-.|..||+||.|.
T Consensus 460 k~~~~EA~IIa---~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGD 536 (764)
T PRK12326 460 KNDAEEARIIA---EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGD 536 (764)
T ss_pred CchHhHHHHHH---hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCC
Confidence 75544432222 2343 35999999999999997 33478888899999999999999999999
Q ss_pred ccEEEEEecCCCc
Q 002040 811 KGCAITFISEEDA 823 (976)
Q Consensus 811 ~g~~~~~~~~~d~ 823 (976)
+|.+..|++-+|.
T Consensus 537 pGss~f~lSleDd 549 (764)
T PRK12326 537 PGSSVFFVSLEDD 549 (764)
T ss_pred CCceeEEEEcchh
Confidence 9999999987664
No 119
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.88 E-value=2.3e-21 Score=208.66 Aligned_cols=124 Identities=24% Similarity=0.320 Sum_probs=106.0
Q ss_pred chHHHHHHHHHHhhhcC---CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCC-c-cEEEecC
Q 002040 698 SDRFLRLLELLGEWYEK---GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-C-NLLIATS 772 (976)
Q Consensus 698 ~~k~~~l~~~l~~~~~~---~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~-~vLVaT~ 772 (976)
+.|+..|.+.|...... -+.|||.+...+.+.+...|.+.|+.|+.+.|+|++..|..+++.|++.- + -+||+-.
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002|consen 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred hhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEec
Confidence 44666666666544433 37899999999999999999999999999999999999999999999764 3 3678889
Q ss_pred cccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCc--cEEEEEecCC
Q 002040 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK--GCAITFISEE 821 (976)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~--g~~~~~~~~~ 821 (976)
+++..||+..+..|+++||+||++.-.|...|++|.|+. -.++.|+.+.
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 999999999999999999999999999999999999974 4566676543
No 120
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.4e-20 Score=202.95 Aligned_cols=189 Identities=21% Similarity=0.288 Sum_probs=142.2
Q ss_pred CcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHH
Q 002040 649 RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKC 727 (976)
Q Consensus 649 ~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~ 727 (976)
.|+|++||||.+.-.... -+..+.-.+...+.+ ...+.+.+....+..|+..|.... .+.++||-+-|++++
T Consensus 387 ~q~i~VSATPg~~E~e~s---~~~vveQiIRPTGLl----DP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELEQS---GGNVVEQIIRPTGLL----DPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHHhc---cCceeEEeecCCCCC----CCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 699999999876522221 112222222222222 233456677777888887777644 456999999999999
Q ss_pred HHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCC-----CCHHHHHHHh
Q 002040 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAP-----NHYEDYVHRV 802 (976)
Q Consensus 728 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p-----~s~~~y~Qr~ 802 (976)
+.|..+|.+.|+.+..+|++.+.-+|..++..++.|.++|||.-+.+-.|||+|.|.+|.++|.. .|-.+.+|.+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998764 5778999999
Q ss_pred cccCCCCCccEEEEEecCCCcCch---------HHHHHHHhhccCCCChHHH
Q 002040 803 GRTGRAGRKGCAITFISEEDAKYS---------PDLVKALELSEQVVPDDLK 845 (976)
Q Consensus 803 GR~gR~g~~g~~~~~~~~~d~~~~---------~~i~~~l~~~~~~vp~~l~ 845 (976)
|||.|.- .|.+++|...-...+- ..+.-.++.....+|..+.
T Consensus 540 GRAARN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~iQ~~yN~~hgItP~ti~ 590 (663)
T COG0556 540 GRAARNV-NGKVILYADKITDSMQKAIDETERRREIQMAYNEEHGITPQTIK 590 (663)
T ss_pred HHHhhcc-CCeEEEEchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhh
Confidence 9999974 7899888754322221 2233344555566675543
No 121
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.6e-20 Score=219.09 Aligned_cols=280 Identities=23% Similarity=0.358 Sum_probs=199.4
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.|+ .|+..|.--..-++.|+++-++||||.|||+- .+.|-.++.. .|.+++||+||..|+.|+++.+.+|+
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK-------KGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh-------cCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 454 79999999999999999999999999999974 4433333332 36789999999999999999999999
Q ss_pred hhcC-cEEEEeeCCCC-h---HHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc------
Q 002040 565 KVMG-VRCVPVYGGSG-V---AQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM------ 632 (976)
Q Consensus 565 ~~~~-~~~~~~~gg~~-~---~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~------ 632 (976)
...+ ..+..+|.+.- . .+....+.. +.+|+|+|..-|...+..- .. -++++|++|.+|.++..
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L----~~-~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL----SK-LKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh----cc-cCCCEEEEccHHHHHhccccHHH
Confidence 8776 55555566652 2 233445554 5799999988766555321 12 35899999999977543
Q ss_pred -----CCchHH-------HHHHHh------------------------cCCCCcEEEEeccCcHHH--HHHHHHHcCCCe
Q 002040 633 -----GFEPQI-------TRIVQN------------------------IRPDRQTVLFSATFPRQV--EILARKVLNKPV 674 (976)
Q Consensus 633 -----~f~~~i-------~~il~~------------------------~~~~~q~i~~SAT~~~~~--~~l~~~~l~~~~ 674 (976)
||...+ ..+... -....++|+.|||..+.- ..+.+.+++.
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF-- 302 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF-- 302 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC--
Confidence 233211 111111 113357899999976532 2345555543
Q ss_pred EEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecC---HHHHHHHHHHHHHCCCCceeccCCCCHH
Q 002040 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS---QEKCDALFRDLLKHGYPCLSLHGAKDQT 751 (976)
Q Consensus 675 ~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s---~~~~~~l~~~L~~~~~~~~~lhg~~~~~ 751 (976)
.++.......+|...+... .-...+++++..+ +...|||++. .+.++.|+.+|..+|+++..+|+..
T Consensus 303 --evG~~~~~LRNIvD~y~~~---~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~--- 372 (1187)
T COG1110 303 --EVGSGGEGLRNIVDIYVES---ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEK--- 372 (1187)
T ss_pred --ccCccchhhhheeeeeccC---ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeeccc---
Confidence 3444444445565555544 3344455555554 3367999999 9999999999999999999999843
Q ss_pred HHHHHHHHhccCCccEEEec----CcccccCCCCC-CcEEEEeCCC
Q 002040 752 DRESTISDFKSNVCNLLIAT----SVAARGLDVKE-LELVINFDAP 792 (976)
Q Consensus 752 ~R~~~~~~F~~g~~~vLVaT----~v~~~GlDi~~-v~~VI~~d~p 792 (976)
...++.|..|+++|||++ .++-||||+|. +.++|+|+.|
T Consensus 373 --~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 373 --EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred --hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 678999999999999976 58889999998 8899999887
No 122
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.87 E-value=5.8e-21 Score=216.80 Aligned_cols=318 Identities=21% Similarity=0.317 Sum_probs=215.6
Q ss_pred CcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 490 PMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 490 p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
+-++|.-+++|+. .+-++|+..++|.|||++ +++.|.+|... ...||. |||||...| ..|..+|.+||.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~----g~~gpH-LVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQI----GNPGPH-LVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHc----CCCCCc-EEEecchhH-HHHHHHHHHhCC
Confidence 6799999999975 456789999999999998 44555566553 123554 999999888 668899999986
Q ss_pred hcCcEEEEeeCCCChHHHHHH-Hh---cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHH
Q 002040 566 VMGVRCVPVYGGSGVAQQISE-LK---RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (976)
Q Consensus 566 ~~~~~~~~~~gg~~~~~~~~~-l~---~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~i 641 (976)
. +.|.+.||.......+.. +. .+++|+|+|+.....-- ....++.-.++.|+|+||+|.+-+++ ...+..+
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~k--dDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~L 547 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSK--DDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHL 547 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCCh--HHHHHHHhccccEEEecchhhhhccc-hHHHHHh
Confidence 4 677777887755444432 22 25799999987553110 00111223468899999999877664 2222222
Q ss_pred HHhcCCCCcEEEEeccCcH-HHHHHHH-----------------------------------------------------
Q 002040 642 VQNIRPDRQTVLFSATFPR-QVEILAR----------------------------------------------------- 667 (976)
Q Consensus 642 l~~~~~~~q~i~~SAT~~~-~~~~l~~----------------------------------------------------- 667 (976)
..++ ..+-|++|+||-. ++.+|..
T Consensus 548 -M~I~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFIL 625 (941)
T KOG0389|consen 548 -MSIN-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFIL 625 (941)
T ss_pred -cccc-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHH
Confidence 2232 3346888888521 1111100
Q ss_pred -----HHcCC-C---eEEEeCC-------------------cccccCC---------------------ceEEE------
Q 002040 668 -----KVLNK-P---VEIQVGG-------------------RSVVNKD---------------------ITQLV------ 692 (976)
Q Consensus 668 -----~~l~~-~---~~i~~~~-------------------~~~~~~~---------------------i~q~~------ 692 (976)
.++.. | ..|.... .+....+ +.+.|
T Consensus 626 RR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~ 705 (941)
T KOG0389|consen 626 RRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLR 705 (941)
T ss_pred HHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHH
Confidence 00000 0 0000000 0000000 00000
Q ss_pred ---------------------------------------------E----ecCcchHHHHHHHHHHhhhcC-CcEEEEec
Q 002040 693 ---------------------------------------------E----VRPESDRFLRLLELLGEWYEK-GKILIFVH 722 (976)
Q Consensus 693 ---------------------------------------------~----~~~~~~k~~~l~~~l~~~~~~-~kvLIF~~ 722 (976)
. ....+.|+..|..+|...... .+||||.+
T Consensus 706 ~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQ 785 (941)
T KOG0389|consen 706 KMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQ 785 (941)
T ss_pred HHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeH
Confidence 0 001134666666677666554 59999999
Q ss_pred CHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCC--ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHH
Q 002040 723 SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVH 800 (976)
Q Consensus 723 s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Q 800 (976)
...+.+.|..+|...++.++.+.|.+.-.+|+.+|..|...+ +-+|++|.+++-|||+.++++||+||+..||-+-.|
T Consensus 786 FTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~Q 865 (941)
T KOG0389|consen 786 FTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQ 865 (941)
T ss_pred HHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccch
Confidence 999999999999999999999999999999999999999654 678999999999999999999999999999999999
Q ss_pred HhcccCCCCCc--cEEEEEecCC
Q 002040 801 RVGRTGRAGRK--GCAITFISEE 821 (976)
Q Consensus 801 r~GR~gR~g~~--g~~~~~~~~~ 821 (976)
.-.||+|.||. -++|.||+..
T Consensus 866 AEDRcHRvGQtkpVtV~rLItk~ 888 (941)
T KOG0389|consen 866 AEDRCHRVGQTKPVTVYRLITKS 888 (941)
T ss_pred hHHHHHhhCCcceeEEEEEEecC
Confidence 99999999986 4566677764
No 123
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.87 E-value=2.8e-20 Score=217.98 Aligned_cols=320 Identities=20% Similarity=0.241 Sum_probs=205.1
Q ss_pred CCcHHHHHHHHHHhc---C-------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIMS---G-------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHS 558 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~---g-------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~ 558 (976)
.+.|+|.+++..+.. | ..+|+...+|+|||++.+..|...+...|. ...--.++|||||. .|+..|++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~-~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQ-AKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcC-ccccccccEEEccH-HHHHHHHH
Confidence 467999999988752 2 358888999999999866555555554432 11122568999995 68899999
Q ss_pred HHHHHHhhcCcEEEEeeCCCCh-H---HHHH---HHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc
Q 002040 559 DIRKFAKVMGVRCVPVYGGSGV-A---QQIS---ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 559 ~~~~~~~~~~~~~~~~~gg~~~-~---~~~~---~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
+|.+|.....+....++|+... . ..+. .-....-|++.+++.+.+++.. ..+..+++||+||.|++-+
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-----il~~~~glLVcDEGHrlkN 390 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-----ILLIRPGLLVCDEGHRLKN 390 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-----HhcCCCCeEEECCCCCccc
Confidence 9999876556777788888764 0 0011 1112357888899988766643 4567799999999998754
Q ss_pred cCCchHHHHHHHhcCCCCcEEEEeccCcHH-H------------------------------------------------
Q 002040 632 MGFEPQITRIVQNIRPDRQTVLFSATFPRQ-V------------------------------------------------ 662 (976)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~i~~SAT~~~~-~------------------------------------------------ 662 (976)
. ...+...+..+.- ..-|++|+|+-.+ +
T Consensus 391 ~--~s~~~kaL~~l~t-~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl 467 (776)
T KOG0390|consen 391 S--DSLTLKALSSLKT-PRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERL 467 (776)
T ss_pred h--hhHHHHHHHhcCC-CceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHH
Confidence 3 2234444444433 3346677774111 0
Q ss_pred ---HHHHHHH------------c-----------------------------------------------CCCeEEEeCC
Q 002040 663 ---EILARKV------------L-----------------------------------------------NKPVEIQVGG 680 (976)
Q Consensus 663 ---~~l~~~~------------l-----------------------------------------------~~~~~i~~~~ 680 (976)
..+...| | ..|..+....
T Consensus 468 ~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~ 547 (776)
T KOG0390|consen 468 QELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCE 547 (776)
T ss_pred HHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccc
Confidence 0111111 1 1110000000
Q ss_pred cc-----cccCC-------ceEEEEecCcchHHHHHHHHHHhhhcC--CcEEEEecCHHHHHHHHHHHHHCCCCceeccC
Q 002040 681 RS-----VVNKD-------ITQLVEVRPESDRFLRLLELLGEWYEK--GKILIFVHSQEKCDALFRDLLKHGYPCLSLHG 746 (976)
Q Consensus 681 ~~-----~~~~~-------i~q~~~~~~~~~k~~~l~~~l~~~~~~--~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg 746 (976)
.. ..++. ......-...+.++..|..+|...... ..+.+..|-....+.+...+.-.|+.++.+||
T Consensus 548 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG 627 (776)
T KOG0390|consen 548 KTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDG 627 (776)
T ss_pred cccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcC
Confidence 00 00000 000000001133555555555333221 13444445555666666666667999999999
Q ss_pred CCCHHHHHHHHHHhccCC---ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEe
Q 002040 747 AKDQTDRESTISDFKSNV---CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (976)
Q Consensus 747 ~~~~~~R~~~~~~F~~g~---~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~ 818 (976)
.|+..+|+.++..|++-. .-+|.+|.+.+.||++-+++.||+||++|||+.-.|+++|+.|.||+-.||+|-
T Consensus 628 ~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYr 702 (776)
T KOG0390|consen 628 KTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYR 702 (776)
T ss_pred CCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEE
Confidence 999999999999998543 557889999999999999999999999999999999999999999988777653
No 124
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=8.9e-20 Score=216.48 Aligned_cols=322 Identities=18% Similarity=0.200 Sum_probs=220.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|. .|++.|..+--.+ ...-|..+.||+|||+++++|++..... |..|.||+||--||.|-+.++..++
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 563 4667776554444 4567889999999999999999876553 6678999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCC---cccccCCceEEEecCccccc-ccC------
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DMG------ 633 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~---~~~~l~~~~~vVlDEah~~~-~~~------ 633 (976)
..+|+.|.++.++.+..+....+. ++|+|+|..-| .++|..+-. .......+.|+||||+|.++ |..
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLII 225 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLII 225 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceee
Confidence 999999999998887766555444 89999999986 344432210 01124678999999999763 110
Q ss_pred ---------CchHHHHHHHhcCC---------------------------------------------------------
Q 002040 634 ---------FEPQITRIVQNIRP--------------------------------------------------------- 647 (976)
Q Consensus 634 ---------f~~~i~~il~~~~~--------------------------------------------------------- 647 (976)
+...+..++..+..
T Consensus 226 Sg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~ 305 (913)
T PRK13103 226 SGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLG 305 (913)
T ss_pred cCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhH
Confidence 00001111111100
Q ss_pred -----------------C-------------------------------------------------------------C
Q 002040 648 -----------------D-------------------------------------------------------------R 649 (976)
Q Consensus 648 -----------------~-------------------------------------------------------------~ 649 (976)
+ .
T Consensus 306 ~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~ 385 (913)
T PRK13103 306 LLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYN 385 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcc
Confidence 0 1
Q ss_pred cEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHH
Q 002040 650 QTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCD 728 (976)
Q Consensus 650 q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~ 728 (976)
++.+||+|.......|. .+++-.+...+...+....... ...+.....|+..++..+...+. +.||||-|.|+...+
T Consensus 386 kLsGMTGTa~te~~Ef~-~iY~l~Vv~IPTnkP~~R~D~~-d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE 463 (913)
T PRK13103 386 KLSGMTGTADTEAFEFR-QIYGLDVVVIPPNKPLARKDFN-DLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSE 463 (913)
T ss_pred hhccCCCCCHHHHHHHH-HHhCCCEEECCCCCCcccccCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHH
Confidence 13344444433332222 2222222222222222211111 12345567889999888887765 459999999999999
Q ss_pred HHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCC-ccEEEecCcccccCCCC--------------------------
Q 002040 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVK-------------------------- 781 (976)
Q Consensus 729 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLVaT~v~~~GlDi~-------------------------- 781 (976)
.|+..|...|+++.+|+......+-..+- ..|. -.|.|||++|+||.||.
T Consensus 464 ~ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~ 540 (913)
T PRK13103 464 HMSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKAD 540 (913)
T ss_pred HHHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHH
Confidence 99999999999998888875544333332 3453 46999999999999995
Q ss_pred -----------CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcC
Q 002040 782 -----------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (976)
Q Consensus 782 -----------~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~ 824 (976)
+=-+||--..+.|----.|-.||+||.|.+|.+..|++-+|..
T Consensus 541 ~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~L 594 (913)
T PRK13103 541 WQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDSL 594 (913)
T ss_pred HHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHH
Confidence 3347888888889888899999999999999999999876653
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.86 E-value=3.3e-19 Score=222.68 Aligned_cols=342 Identities=19% Similarity=0.218 Sum_probs=214.8
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH
Q 002040 476 SKIMETIRKLNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (976)
Q Consensus 476 ~~l~~~l~~~~~~~p~~~Q~~~i~----~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~ 551 (976)
+.+...+...||. ++|.|.+.+. .+..++++++.|+||+|||++|++|++.++. .+.++||.|||++
T Consensus 233 ~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t~~ 303 (850)
T TIGR01407 233 SLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNTKV 303 (850)
T ss_pred HHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCcHH
Confidence 3556666678886 7899998776 4557889999999999999999999987754 2447999999999
Q ss_pred HHHHHHH-HHHHHHhhcC--cEEEEeeCCCChH---------------HH------------------------------
Q 002040 552 LVQQIHS-DIRKFAKVMG--VRCVPVYGGSGVA---------------QQ------------------------------ 583 (976)
Q Consensus 552 La~Q~~~-~~~~~~~~~~--~~~~~~~gg~~~~---------------~~------------------------------ 583 (976)
|..|+.. .+..+.+.++ ++++++.|+...- ..
T Consensus 304 Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~ 383 (850)
T TIGR01407 304 LQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNK 383 (850)
T ss_pred HHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcch
Confidence 9999965 5666665555 7777777654220 00
Q ss_pred --HHH------------------------HhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC----
Q 002040 584 --ISE------------------------LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---- 633 (976)
Q Consensus 584 --~~~------------------------l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~---- 633 (976)
+.. ....++||||++..|+..+.... .-|....+|||||||++.+..
T Consensus 384 ~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~---~ilp~~~~lIiDEAH~L~d~a~~~~ 460 (850)
T TIGR01407 384 MFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP---ELFPSFRDLIIDEAHHLPDIAENQL 460 (850)
T ss_pred hhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc---ccCCCCCEEEEECcchHHHHHHHHh
Confidence 000 01146899999998877764332 234566899999999874210
Q ss_pred ---C-----chH----------------------------------------------------------------HHHH
Q 002040 634 ---F-----EPQ----------------------------------------------------------------ITRI 641 (976)
Q Consensus 634 ---f-----~~~----------------------------------------------------------------i~~i 641 (976)
+ ... +...
T Consensus 461 ~~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~ 540 (850)
T TIGR01407 461 QEELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKF 540 (850)
T ss_pred cceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 0 000 0000
Q ss_pred HHh---------------------c---------------------------CCCCcEEEEeccCcH--HHHHHHHHHcC
Q 002040 642 VQN---------------------I---------------------------RPDRQTVLFSATFPR--QVEILARKVLN 671 (976)
Q Consensus 642 l~~---------------------~---------------------------~~~~q~i~~SAT~~~--~~~~l~~~~l~ 671 (976)
+.. . .....+|++|||++. ....+ ...++
T Consensus 541 ~~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~-~~~lG 619 (850)
T TIGR01407 541 DLALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESF-PQLLG 619 (850)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHH-HHhcC
Confidence 000 0 001357899999863 22323 33333
Q ss_pred C--CeEEEeCCccccc-CCceEEEEe---c-----CcchHHHHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHH--
Q 002040 672 K--PVEIQVGGRSVVN-KDITQLVEV---R-----PESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLK-- 736 (976)
Q Consensus 672 ~--~~~i~~~~~~~~~-~~i~q~~~~---~-----~~~~k~~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~-- 736 (976)
- .....+...++.. ... ..+.. . ........+...|.... ..|++||||++...++.++..|..
T Consensus 620 l~~~~~~~~~~spf~~~~~~-~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~ 698 (850)
T TIGR01407 620 LTDVHFNTIEPTPLNYAENQ-RVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELP 698 (850)
T ss_pred CCccccceecCCCCCHHHcC-EEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhc
Confidence 2 1212221111111 111 11111 0 11122234444443332 457999999999999999999975
Q ss_pred --CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCc--EEEEeCCCCC----H-------------
Q 002040 737 --HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE--LVINFDAPNH----Y------------- 795 (976)
Q Consensus 737 --~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~--~VI~~d~p~s----~------------- 795 (976)
.++.+ +..+.. ..|..+++.|++|...|||||+.+++|||+++.. +||+...|.. +
T Consensus 699 ~~~~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g 775 (850)
T TIGR01407 699 EFEGYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEG 775 (850)
T ss_pred cccCceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhc
Confidence 23333 333333 5788999999999999999999999999999955 5677665531 1
Q ss_pred -------------HHHHHHhcccCCCCCccEEEEEecCC--CcCchHHHHHHHh
Q 002040 796 -------------EDYVHRVGRTGRAGRKGCAITFISEE--DAKYSPDLVKALE 834 (976)
Q Consensus 796 -------------~~y~Qr~GR~gR~g~~g~~~~~~~~~--d~~~~~~i~~~l~ 834 (976)
..+.|.+||+-|......++++++.. ...|-..+.+.|.
T Consensus 776 ~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 776 KNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred CCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEccccccchHHHHHHHhCC
Confidence 12359999999987665566666654 4456667766664
No 126
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.85 E-value=1e-19 Score=220.21 Aligned_cols=301 Identities=18% Similarity=0.189 Sum_probs=182.5
Q ss_pred CcHHHHHHHHHHh----c------CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 490 PMPIQAQALPVIM----S------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 490 p~~~Q~~~i~~il----~------g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
|.++|..|+..+. . .+..|++++||||||++++..+...+. ...++++|||||+.+|..|+...
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~------~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE------LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh------hcCCCeEEEEECcHHHHHHHHHH
Confidence 6789999988764 2 257999999999999986655544432 12468999999999999999999
Q ss_pred HHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHH
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQI 638 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i 638 (976)
|..+... +..+..+.......+.. ...|+|+|...|...+.........-..--+||+||||+... ..+
T Consensus 313 f~~~~~~------~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~----~~~ 382 (667)
T TIGR00348 313 FQSLQKD------CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY----GEL 382 (667)
T ss_pred HHhhCCC------CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc----hHH
Confidence 9886431 11111222222233332 368999999999764432111111101113899999998642 234
Q ss_pred HHHHHhcCCCCcEEEEeccCcHHHHHHHHHHc----CCCeEEEeCCcccccCCceEEE--Ee------cC----------
Q 002040 639 TRIVQNIRPDRQTVLFSATFPRQVEILARKVL----NKPVEIQVGGRSVVNKDITQLV--EV------RP---------- 696 (976)
Q Consensus 639 ~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l----~~~~~i~~~~~~~~~~~i~q~~--~~------~~---------- 696 (976)
..++...-++...|+|||||-..........+ +.++. ...-.......+...+ .. ..
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~-~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLH-RYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEE-EeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 44444334567899999998542111111111 12221 1111111111100000 00 00
Q ss_pred -----------------------------cchHHHHHHHHHHhhh----c--CCcEEEEecCHHHHHHHHHHHHHC----
Q 002040 697 -----------------------------ESDRFLRLLELLGEWY----E--KGKILIFVHSQEKCDALFRDLLKH---- 737 (976)
Q Consensus 697 -----------------------------~~~k~~~l~~~l~~~~----~--~~kvLIF~~s~~~~~~l~~~L~~~---- 737 (976)
....+..+...+..++ . .++++|||.++..|..+...|.+.
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 0000111122222221 1 379999999999999999888664
Q ss_pred -CCCceeccCCCCHH---------------------HHHHHHHHhcc-CCccEEEecCcccccCCCCCCcEEEEeCCCCC
Q 002040 738 -GYPCLSLHGAKDQT---------------------DRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINFDAPNH 794 (976)
Q Consensus 738 -~~~~~~lhg~~~~~---------------------~R~~~~~~F~~-g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s 794 (976)
+..++.+++..+.. ....++..|++ +.++|||+++.+.+|+|+|.+++++..-+-.
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk- 620 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLK- 620 (667)
T ss_pred cCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecccc-
Confidence 34556666654332 12368889976 6889999999999999999999999555544
Q ss_pred HHHHHHHhcccCCC
Q 002040 795 YEDYVHRVGRTGRA 808 (976)
Q Consensus 795 ~~~y~Qr~GR~gR~ 808 (976)
...++|.+||+.|.
T Consensus 621 ~h~LlQai~R~nR~ 634 (667)
T TIGR00348 621 YHGLLQAIARTNRI 634 (667)
T ss_pred ccHHHHHHHHhccc
Confidence 45789999999994
No 127
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=4.7e-19 Score=209.47 Aligned_cols=309 Identities=19% Similarity=0.274 Sum_probs=211.9
Q ss_pred CCCcHHHHHHHHHHhcC----CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g----~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
..+.+-|..++..|... ...++.|.||||||.+|+-.+-..+.. |..+|||+|-..|..|+...|+..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHH
Confidence 35678999999999765 578999999999999988777766654 678999999999999998888876
Q ss_pred HhhcCcEEEEeeCCCChHHHHH---HHh-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc-----CC
Q 002040 564 AKVMGVRCVPVYGGSGVAQQIS---ELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-----GF 634 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~-----~f 634 (976)
+|..+.++++|.+..+... ... ....|||||=..| +..|.++++|||||-|-..-. .+
T Consensus 269 ---Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----------F~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 269 ---FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----------FLPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred ---hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh----------cCchhhccEEEEeccccccccCCcCCCc
Confidence 4678888888887665533 333 3579999996544 257888999999999943211 13
Q ss_pred chHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccccc-CCceEEEEecCcchHH-----HHHHHHH
Q 002040 635 EPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVN-KDITQLVEVRPESDRF-----LRLLELL 708 (976)
Q Consensus 635 ~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~-~~i~q~~~~~~~~~k~-----~~l~~~l 708 (976)
...-..++.....++++|+-|||++-+ .+.+-.-+....+.+..+.... ..-.+.+.+....... ..|+..|
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i 413 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAI 413 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHH
Confidence 333344555555678899999998644 3333333333333333332211 1112222222222222 4566666
Q ss_pred Hhhhc-CCcEEEEecCHHHH------------------------------------------------------------
Q 002040 709 GEWYE-KGKILIFVHSQEKC------------------------------------------------------------ 727 (976)
Q Consensus 709 ~~~~~-~~kvLIF~~s~~~~------------------------------------------------------------ 727 (976)
.+... +.++|||.|.+..+
T Consensus 414 ~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gt 493 (730)
T COG1198 414 RKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGT 493 (730)
T ss_pred HHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccH
Confidence 65554 45888888865433
Q ss_pred HHHHHHHHHC--CCCceeccCCCCHH--HHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC----------
Q 002040 728 DALFRDLLKH--GYPCLSLHGAKDQT--DRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------- 793 (976)
Q Consensus 728 ~~l~~~L~~~--~~~~~~lhg~~~~~--~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~---------- 793 (976)
+.+.+.|... +..+..+.++.... .-...+..|.+|+.+|||.|.+++-|+|+|++++|...|...
T Consensus 494 erieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~ 573 (730)
T COG1198 494 ERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRAS 573 (730)
T ss_pred HHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchH
Confidence 2333333332 45666677766543 356789999999999999999999999999999988766543
Q ss_pred --CHHHHHHHhcccCCCCCccEEEEEec
Q 002040 794 --HYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 794 --s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
...-+.|-.||+||++.+|.+++-.-
T Consensus 574 Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 574 ERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred HHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 23456799999999998998877543
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.84 E-value=5.2e-19 Score=213.33 Aligned_cols=148 Identities=20% Similarity=0.328 Sum_probs=129.7
Q ss_pred cchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
...++..|+..|..+.. +.++||||++...++.|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||++++
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~ 507 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLR 507 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHh
Confidence 44567778888877654 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCC-----CCCHHHHHHHhcccCCCCCccEEEEEecC---------CCcCchHHHHHHHhhccCCCC
Q 002040 776 RGLDVKELELVINFDA-----PNHYEDYVHRVGRTGRAGRKGCAITFISE---------EDAKYSPDLVKALELSEQVVP 841 (976)
Q Consensus 776 ~GlDi~~v~~VI~~d~-----p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~---------~d~~~~~~i~~~l~~~~~~vp 841 (976)
+|+|+|++++||+++. |.+...|+||+||+||. ..|.|++|++. .+......|...+......+|
T Consensus 508 rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 586 (652)
T PRK05298 508 EGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITP 586 (652)
T ss_pred CCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999999999999875 78999999999999996 68999999984 355566677777778888888
Q ss_pred hHHH
Q 002040 842 DDLK 845 (976)
Q Consensus 842 ~~l~ 845 (976)
..+.
T Consensus 587 ~~~~ 590 (652)
T PRK05298 587 KTIK 590 (652)
T ss_pred hhHH
Confidence 6553
No 129
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.84 E-value=2.8e-19 Score=200.03 Aligned_cols=293 Identities=17% Similarity=0.205 Sum_probs=219.2
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhh-------------cCc-------------------EEEEeeCCCChHHHHHH
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKV-------------MGV-------------------RCVPVYGGSGVAQQISE 586 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~-------------~~~-------------------~~~~~~gg~~~~~~~~~ 586 (976)
..|+||||||+|..|..+.+.+..++.. +|+ ....+++|+..+.....
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 3699999999999999998888776533 120 00011122211111000
Q ss_pred H------------hcCCeEEEeCchhHHHHHHhc---CCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCC---
Q 002040 587 L------------KRGTEIVVCTPGRMIDILCTS---GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD--- 648 (976)
Q Consensus 587 l------------~~~~~Iiv~Tp~~L~~~l~~~---~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~--- 648 (976)
+ -.++|||||+|-.|...+... ......|++|.++|||.||.|+ |+.|.++..++.+++..
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~-MQNW~Hv~~v~~~lN~~P~~ 194 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL-MQNWEHVLHVFEHLNLQPKK 194 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH-HhhHHHHHHHHHHhccCCCC
Confidence 0 015799999999998888752 2223458999999999999655 77788888888776422
Q ss_pred ---------------------CcEEEEeccCcHHHHHHHHHHcCCC---eEEEeCCc-----ccccCCceEEEEecC---
Q 002040 649 ---------------------RQTVLFSATFPRQVEILARKVLNKP---VEIQVGGR-----SVVNKDITQLVEVRP--- 696 (976)
Q Consensus 649 ---------------------~q~i~~SAT~~~~~~~l~~~~l~~~---~~i~~~~~-----~~~~~~i~q~~~~~~--- 696 (976)
+|+|+||+...+.+..+....+.+. +.+..... ..+...+.|.+...+
T Consensus 195 ~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s 274 (442)
T PF06862_consen 195 SHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSS 274 (442)
T ss_pred CCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCC
Confidence 7999999999999999999977765 22222212 234456777776432
Q ss_pred ----cchHHHHHHHHH-Hhhh---cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEE
Q 002040 697 ----ESDRFLRLLELL-GEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768 (976)
Q Consensus 697 ----~~~k~~~l~~~l-~~~~---~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 768 (976)
.+.++..+...+ ..+. ..+.+|||+++.-+...|.++|.+.++.++.+|.++++.+-..+...|..|...||
T Consensus 275 ~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 275 PADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred cchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 345666665533 3332 34689999999999999999999999999999999999999999999999999999
Q ss_pred EecCccc--ccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCC------ccEEEEEecCCCcCchHHHHHH
Q 002040 769 IATSVAA--RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR------KGCAITFISEEDAKYSPDLVKA 832 (976)
Q Consensus 769 VaT~v~~--~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~------~g~~~~~~~~~d~~~~~~i~~~ 832 (976)
|.|.-+. +-..|.++..||+|.+|.++..|...++-.+.... ...|.++|+..|...++.|+-.
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 9999666 88999999999999999999999988876665433 5799999999998888877753
No 130
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.83 E-value=1.2e-18 Score=188.53 Aligned_cols=312 Identities=14% Similarity=0.164 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHh-cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 488 EKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il-~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
..+.|+|.+++...+ .|..+|+..+||.|||++++..+..+...++ .|||||.. |-..|...+.+|+..
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwp---------lliVcPAs-vrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWP---------LLIVCPAS-VRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCc---------EEEEecHH-HhHHHHHHHHHhccc
Confidence 357899999998766 5778899999999999998877766655543 48999964 558899999998865
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
... +.++.++..... .+-....|.|.++..|..+-.. ..-..+.+||+||.|.+-+. -......++..+.
T Consensus 267 ~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~~-----l~~~~~~vvI~DEsH~Lk~s-ktkr~Ka~~dllk 336 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHDI-----LKKEKYRVVIFDESHMLKDS-KTKRTKAATDLLK 336 (689)
T ss_pred ccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHHH-----HhcccceEEEEechhhhhcc-chhhhhhhhhHHH
Confidence 433 445555553321 2223457999999887544321 22344899999999966443 2334555555555
Q ss_pred CCCcEEEEeccCc----H---------------HHHHHHHHHcCCC---eEEEeCCccc---------------------
Q 002040 647 PDRQTVLFSATFP----R---------------QVEILARKVLNKP---VEIQVGGRSV--------------------- 683 (976)
Q Consensus 647 ~~~q~i~~SAT~~----~---------------~~~~l~~~~l~~~---~~i~~~~~~~--------------------- 683 (976)
...++|++|+|+. . ..-.++..|+..- +.+...+.+.
T Consensus 337 ~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dv 416 (689)
T KOG1000|consen 337 VAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADV 416 (689)
T ss_pred HhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5667999999962 1 1122333343221 1111111110
Q ss_pred ---ccCCceEEEEecCc-------------------------------------chHHHHHHHHHHhh-----hcCCcEE
Q 002040 684 ---VNKDITQLVEVRPE-------------------------------------SDRFLRLLELLGEW-----YEKGKIL 718 (976)
Q Consensus 684 ---~~~~i~q~~~~~~~-------------------------------------~~k~~~l~~~l~~~-----~~~~kvL 718 (976)
.++.-.+.+.+... ..|+..+.+.|... .+..+.|
T Consensus 417 L~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kfl 496 (689)
T KOG1000|consen 417 LKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFL 496 (689)
T ss_pred HhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEE
Confidence 01111222222111 01222233333331 1234899
Q ss_pred EEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccC-Ccc-EEEecCcccccCCCCCCcEEEEeCCCCCHH
Q 002040 719 IFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIATSVAARGLDVKELELVINFDAPNHYE 796 (976)
Q Consensus 719 IF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~ 796 (976)
|||..+...+.+...+.+.++..+.|.|.++...|....+.|+.. .+. -|++..++++||++..+.+||+...+|||.
T Consensus 497 VFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPg 576 (689)
T KOG1000|consen 497 VFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPG 576 (689)
T ss_pred EEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCc
Confidence 999999999999999999999999999999999999999999954 444 456778999999999999999999999999
Q ss_pred HHHHHhcccCCCCCccEEEEEec
Q 002040 797 DYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 797 ~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
-.+|.-.|++|.|++..+.++|.
T Consensus 577 vLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 577 VLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred eEEechhhhhhccccceeeEEEE
Confidence 99999999999999987766654
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=2.8e-18 Score=201.45 Aligned_cols=322 Identities=20% Similarity=0.243 Sum_probs=218.8
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|++.|.-+.-.+..| .|..+.||-|||+++++|++...+. |..|-||+..--||..=..++..++
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHH
Confidence 565 4788888777666655 5889999999999999998765443 4457788888899999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCC---cccccCCceEEEecCccccc-ccC------
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DMG------ 633 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~---~~~~l~~~~~vVlDEah~~~-~~~------ 633 (976)
..+|+.|.++..+.........+ .|+|++||..-| .++|..+-. .......+.|.||||+|.++ +..
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLII 221 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLII 221 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccc
Confidence 99999999998887666554444 489999999876 345543211 11224678899999999763 111
Q ss_pred ---------CchHHHHHHHhcCCC--------------------------------------------------------
Q 002040 634 ---------FEPQITRIVQNIRPD-------------------------------------------------------- 648 (976)
Q Consensus 634 ---------f~~~i~~il~~~~~~-------------------------------------------------------- 648 (976)
+...+..++..+...
T Consensus 222 Sg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~ 301 (925)
T PRK12903 222 SGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDV 301 (925)
T ss_pred cCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCC
Confidence 001111111111110
Q ss_pred ------------------------------------------------------------CcEEEEeccCcHHHHHHHHH
Q 002040 649 ------------------------------------------------------------RQTVLFSATFPRQVEILARK 668 (976)
Q Consensus 649 ------------------------------------------------------------~q~i~~SAT~~~~~~~l~~~ 668 (976)
.++.+||+|.......+..
T Consensus 302 dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~- 380 (925)
T PRK12903 302 EYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFID- 380 (925)
T ss_pred ceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHH-
Confidence 1233444444333333322
Q ss_pred HcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCC
Q 002040 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (976)
Q Consensus 669 ~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~ 747 (976)
.++-.+...+...+...... ....+.....|+..++..+...+. +.||||.|.++...+.|+..|...|+++..+++.
T Consensus 381 iY~l~Vv~IPTnkP~~R~D~-~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk 459 (925)
T PRK12903 381 IYNMRVNVVPTNKPVIRKDE-PDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAK 459 (925)
T ss_pred HhCCCEEECCCCCCeeeeeC-CCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeeccc
Confidence 22222222211111111111 112344567888888888877654 4599999999999999999999999999999986
Q ss_pred CCHHHHHHHHHHhccCC-ccEEEecCcccccCCCCCC--------cEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEe
Q 002040 748 KDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKEL--------ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (976)
Q Consensus 748 ~~~~~R~~~~~~F~~g~-~~vLVaT~v~~~GlDi~~v--------~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~ 818 (976)
.... +..+-. ..|. -.|.|||++|+||.||.-- -+||....|.|----.|..||+||.|.+|.+..|+
T Consensus 460 ~~e~--EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~l 536 (925)
T PRK12903 460 QNAR--EAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFI 536 (925)
T ss_pred chhh--HHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEE
Confidence 4433 322222 4564 4699999999999999743 28998999999888899999999999999999999
Q ss_pred cCCCcC
Q 002040 819 SEEDAK 824 (976)
Q Consensus 819 ~~~d~~ 824 (976)
+-+|..
T Consensus 537 SLeD~L 542 (925)
T PRK12903 537 SLDDQL 542 (925)
T ss_pred ecchHH
Confidence 877653
No 132
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.83 E-value=2.9e-19 Score=206.30 Aligned_cols=298 Identities=19% Similarity=0.241 Sum_probs=194.3
Q ss_pred CCCcHHHHHHHHHHh----cCC-CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIM----SGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il----~g~-d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
..|+.+|..||..+. .|+ .+|+++.||+|||.+++. |+..|.+. +.-.+||+|+-+..|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-----~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-----GWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-----chhheeeEEechHHHHHHHHHHHHH
Confidence 468899999998765 443 489999999999988554 44444432 3456899999999999999999888
Q ss_pred HHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC--cccccCCceEEEecCcccccccCCchHHHH
Q 002040 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--KITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (976)
Q Consensus 563 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~--~~~~l~~~~~vVlDEah~~~~~~f~~~i~~ 640 (976)
+... +..+..+.+.... ..+.|.|+|+..|...+..... ..+....+++||||||||-. ......
T Consensus 238 ~~P~-~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPF-GTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCC-ccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 7653 3333333222211 1489999999999888865421 22334569999999999854 333345
Q ss_pred HHHhcCCCCcEEEEeccCcHHHHHHHHHHc-CCCeEEEeCC-----cccccCCceEE-----------------------
Q 002040 641 IVQNIRPDRQTVLFSATFPRQVEILARKVL-NKPVEIQVGG-----RSVVNKDITQL----------------------- 691 (976)
Q Consensus 641 il~~~~~~~q~i~~SAT~~~~~~~l~~~~l-~~~~~i~~~~-----~~~~~~~i~q~----------------------- 691 (976)
|+.++..- ++++||||...+..-.-.|+ +.|+..+--. .-.++..+...
T Consensus 305 I~dYFdA~--~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDAA--TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHHH--HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 65555433 34559998765544444444 4443321100 00000000000
Q ss_pred --------EEecC------cchHHHHHHHHHHhhhc-------CCcEEEEecCHHHHHHHHHHHHHC-----CCCceecc
Q 002040 692 --------VEVRP------ESDRFLRLLELLGEWYE-------KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLH 745 (976)
Q Consensus 692 --------~~~~~------~~~k~~~l~~~l~~~~~-------~~kvLIF~~s~~~~~~l~~~L~~~-----~~~~~~lh 745 (976)
+...+ .......+...|..+.. -+++||||.+..+|+.+...|... +--|..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00000 00111223333333322 258999999999999999999764 34467777
Q ss_pred CCCCHHHHHHHHHHhcc--CCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC
Q 002040 746 GAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (976)
Q Consensus 746 g~~~~~~R~~~~~~F~~--g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~ 808 (976)
|...+.+ ..+..|.. .-..|.|+.+++.+|||+|.|.++|++-.-.|..-|.|++||.-|.
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 7665443 34666654 3357888999999999999999999999999999999999999885
No 133
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.81 E-value=3.7e-19 Score=192.23 Aligned_cols=310 Identities=17% Similarity=0.198 Sum_probs=203.8
Q ss_pred CCCcHHHHHHHHHHhcC---CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMSG---RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g---~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
..++|+|..++..++.+ +..||+.|+|+|||++-+.++... ...|||||.+-..+.||...|+.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 46789999999999843 579999999999999855444321 3468999999999999999999998
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC-----cccccCCceEEEecCcccccccCCchHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG-----KITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~-----~~~~l~~~~~vVlDEah~~~~~~f~~~i~ 639 (976)
..-+-.++.++..... ....++.|+|+|+.++..--.+.+. ....-..|+++||||+|.+...-|...+.
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 7666666666554422 2345789999999876321110000 00123568999999999776555555555
Q ss_pred HHHHhcCCCCcEEEEeccCcHHHHHHHH-HHcCCC--------------eEEEeCCcccccC-------------CceEE
Q 002040 640 RIVQNIRPDRQTVLFSATFPRQVEILAR-KVLNKP--------------VEIQVGGRSVVNK-------------DITQL 691 (976)
Q Consensus 640 ~il~~~~~~~q~i~~SAT~~~~~~~l~~-~~l~~~--------------~~i~~~~~~~~~~-------------~i~q~ 691 (976)
.+-.++ -|++|||+-++-..+.. .|+-.| ..-.+....+..+ .-...
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 444444 48999997443211110 011111 0001110111100 01111
Q ss_pred EEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhc-cCCccEEE
Q 002040 692 VEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK-SNVCNLLI 769 (976)
Q Consensus 692 ~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~-~g~~~vLV 769 (976)
........||...--+|.-+- .+.++|||..+.-.+..++-.| | --.|+|.+++.+|..|++.|+ +..++.|+
T Consensus 520 lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl---~--KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIF 594 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL---G--KPFIYGPTSQNERMKILQNFQTNPKVNTIF 594 (776)
T ss_pred eeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc---C--CceEECCCchhHHHHHHHhcccCCccceEE
Confidence 222334556665544544333 3459999999887776666555 3 346899999999999999999 55788899
Q ss_pred ecCcccccCCCCCCcEEEEeCCCC-CHHHHHHHhcccCCCC------CccEEEEEecCCCc
Q 002040 770 ATSVAARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAG------RKGCAITFISEEDA 823 (976)
Q Consensus 770 aT~v~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GR~gR~g------~~g~~~~~~~~~d~ 823 (976)
...++.+.||+|.++++|...... |--.-.||+||+-|+- -....|.+++.+..
T Consensus 595 lSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 595 LSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred EeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 999999999999999999876643 4567789999998863 23456666766543
No 134
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.80 E-value=2.2e-18 Score=178.10 Aligned_cols=188 Identities=39% Similarity=0.646 Sum_probs=155.5
Q ss_pred HcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
.+++..|+++|.+++..++.. +.++++++||+|||++++.+++.++...+ ...+||++|+..++.|+...+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHH
Confidence 356778999999999999998 99999999999999999999988876532 45799999999999999999998
Q ss_pred HHhhcCcEEEEeeCCCChHHHHHHHhcCC-eEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHH
Q 002040 563 FAKVMGVRCVPVYGGSGVAQQISELKRGT-EIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (976)
Q Consensus 563 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~-~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~i 641 (976)
++..........+++......+..+..+. +|+++|++.|.+.+.... ..+..+.+|||||||.+....+...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~---~~~~~~~~iIiDE~h~~~~~~~~~~~~~~ 153 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL---LELSNVDLVILDEAHRLLDGGFGDQLEKL 153 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC---cCHhHCCEEEEECHHHHhcCCcHHHHHHH
Confidence 87655545566677766556666666666 999999999998886542 35667889999999988765678888888
Q ss_pred HHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCC
Q 002040 642 VQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (976)
Q Consensus 642 l~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~ 680 (976)
+..+.+..+++++|||++..+......++...+.+....
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888888899999999999999989999888777766543
No 135
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=2.2e-19 Score=208.76 Aligned_cols=322 Identities=20% Similarity=0.249 Sum_probs=207.1
Q ss_pred CCcHHHHHHHHHHhc----CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIMS----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~----g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.+.+||..++.|+.+ +-+.|+..+||.|||++ .+.++.+++... ...||. |||||+..|.+ |..+|..|+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K---~~~GP~-LvivPlstL~N-W~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHK---QMQGPF-LIIVPLSTLVN-WSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHc---ccCCCe-EEeccccccCC-chhhccccc
Confidence 567899999999863 34789999999999998 444555555432 335665 99999999854 667777765
Q ss_pred hhcCcEEEEeeCCCChHHH--HH-HHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQ--IS-ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~--~~-~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~i 641 (976)
.. -..++|-|++.... .. ......+|+++|+..++.- ..+..--+|.|+||||.|+|-+.. ..+...
T Consensus 468 PS---v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd-----k~lLsKI~W~yMIIDEGHRmKNa~--~KLt~~ 537 (1157)
T KOG0386|consen 468 PS---VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD-----KALLSKISWKYMIIDEGHRMKNAI--CKLTDT 537 (1157)
T ss_pred cc---eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC-----HHHHhccCCcceeecccccccchh--hHHHHH
Confidence 43 23344555533211 11 1123579999999877541 011122357899999999985421 111111
Q ss_pred HHhcCCCCcEEEEeccC---------------------------------------------------------------
Q 002040 642 VQNIRPDRQTVLFSATF--------------------------------------------------------------- 658 (976)
Q Consensus 642 l~~~~~~~q~i~~SAT~--------------------------------------------------------------- 658 (976)
+........-+++|+|+
T Consensus 538 L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 538 LNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 11111111123333332
Q ss_pred ------------cHHHHH------------------------------------------HHHHHcCCCeEEEeCCcccc
Q 002040 659 ------------PRQVEI------------------------------------------LARKVLNKPVEIQVGGRSVV 684 (976)
Q Consensus 659 ------------~~~~~~------------------------------------------l~~~~l~~~~~i~~~~~~~~ 684 (976)
|..++. ..+++|+.|..+.-..
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve---- 693 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVE---- 693 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhc----
Confidence 100000 0111111111110000
Q ss_pred cCCceEE---EEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHh
Q 002040 685 NKDITQL---VEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF 760 (976)
Q Consensus 685 ~~~i~q~---~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 760 (976)
..+... ..+.-.+.|+..|-.+|.++.. +++||+||......+.+..+|.-.++..+.+.|.+...+|...+..|
T Consensus 694 -~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~F 772 (1157)
T KOG0386|consen 694 -NSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIF 772 (1157)
T ss_pred -cccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHh
Confidence 000000 0111224566666666665543 56999999999999999999999999999999999999999999999
Q ss_pred ccC---CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHH
Q 002040 761 KSN---VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (976)
Q Consensus 761 ~~g---~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 831 (976)
+.- -+.||++|.+++.|||+..+++||+||..|+|..+.|+..|++|.|++..|.+|....-..+-..|+.
T Consensus 773 N~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~ 846 (1157)
T KOG0386|consen 773 NAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILA 846 (1157)
T ss_pred cCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHH
Confidence 854 36789999999999999999999999999999999999999999999888777665443333333333
No 136
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.79 E-value=7.1e-18 Score=196.40 Aligned_cols=121 Identities=21% Similarity=0.316 Sum_probs=103.4
Q ss_pred HHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCC--ccEEEecCccccc
Q 002040 701 FLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV--CNLLIATSVAARG 777 (976)
Q Consensus 701 ~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~--~~vLVaT~v~~~G 777 (976)
+..|.-+|.++.. +.++|||++...+++.|..+|.-+||.++.|.|....++|+..|..|+... +++|++|...+.|
T Consensus 1262 LQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvG 1341 (1958)
T KOG0391|consen 1262 LQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVG 1341 (1958)
T ss_pred HHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccc
Confidence 3333344444433 348999999999999999999999999999999999999999999999764 6899999999999
Q ss_pred CCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEE--EEEecCC
Q 002040 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (976)
Q Consensus 778 lDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~--~~~~~~~ 821 (976)
||+.++++||+||..||+.--.|.-.||+|+|+.-.+ |.||++.
T Consensus 1342 iNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1342 INLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred cccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 9999999999999999999999999999999987555 4456543
No 137
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.79 E-value=8.7e-17 Score=198.03 Aligned_cols=329 Identities=19% Similarity=0.234 Sum_probs=204.7
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH-HHH
Q 002040 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSD 559 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~-~~~ 559 (976)
.|| .+++-|.+.+..|. .+..+++.|+||+|||++|++|++... .+++|||++||++|+.|+ ...
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~ 311 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEE 311 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHH
Confidence 344 58899998665543 567899999999999999999988653 256899999999999999 477
Q ss_pred HHHHHhhcCcEEEEeeCCCChH-----HH------------------------------------------HHHH-----
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVA-----QQ------------------------------------------ISEL----- 587 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~-----~~------------------------------------------~~~l----- 587 (976)
+..+...+++.+.++.|+..+- .+ +..+
T Consensus 312 i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~ 391 (820)
T PRK07246 312 VKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGN 391 (820)
T ss_pred HHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCC
Confidence 8888888888888777764320 00 0000
Q ss_pred -------------------hcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-----Cc-------h
Q 002040 588 -------------------KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FE-------P 636 (976)
Q Consensus 588 -------------------~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-----f~-------~ 636 (976)
...++|||+.+..|+..+.... .+..+.+|||||||++.+.. .. .
T Consensus 392 ~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~----~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~ 467 (820)
T PRK07246 392 LSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK----DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQ 467 (820)
T ss_pred CCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc----CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHH
Confidence 0146799999998877664331 35679999999999874211 00 0
Q ss_pred HH-------------------------------------------------------------HHHHHh--------c--
Q 002040 637 QI-------------------------------------------------------------TRIVQN--------I-- 645 (976)
Q Consensus 637 ~i-------------------------------------------------------------~~il~~--------~-- 645 (976)
.+ ..++.. .
T Consensus 468 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~ 547 (820)
T PRK07246 468 TIQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEK 547 (820)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 00 000000 0
Q ss_pred -----------------------CCCCcEEEEeccCc--HHHHHHHHHHcC-CCeEEEeCCcccccCCceEEEEec---C
Q 002040 646 -----------------------RPDRQTVLFSATFP--RQVEILARKVLN-KPVEIQVGGRSVVNKDITQLVEVR---P 696 (976)
Q Consensus 646 -----------------------~~~~q~i~~SAT~~--~~~~~l~~~~l~-~~~~i~~~~~~~~~~~i~q~~~~~---~ 696 (976)
.....+|++|||++ +... +...+.- ......+. ..... .+.+.+. +
T Consensus 548 ~~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~---~~~~~-~~~~~i~~~~p 622 (820)
T PRK07246 548 QSEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE---KDKKQ-DQLVVVDQDMP 622 (820)
T ss_pred CCCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC---CChHH-ccEEEeCCCCC
Confidence 00134788888885 2222 3222211 11111111 11110 1111111 1
Q ss_pred ------cchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEE
Q 002040 697 ------ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (976)
Q Consensus 697 ------~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 769 (976)
.......+...|.... .+|++|||++|...+..++..|....+.+ ...|... .+..+++.|+.+...||+
T Consensus 623 ~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLl 699 (820)
T PRK07246 623 LVTETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILL 699 (820)
T ss_pred CCCCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEE
Confidence 1223334444443322 46899999999999999999997655544 4445322 245689999998889999
Q ss_pred ecCcccccCCCCC--CcEEEEeCCCC----CH--------------------------HHHHHHhcccCCCCCccEEEEE
Q 002040 770 ATSVAARGLDVKE--LELVINFDAPN----HY--------------------------EDYVHRVGRTGRAGRKGCAITF 817 (976)
Q Consensus 770 aT~v~~~GlDi~~--v~~VI~~d~p~----s~--------------------------~~y~Qr~GR~gR~g~~g~~~~~ 817 (976)
+|..+..|||+|+ ...||+...|. +| ..+.|.+||+-|....--++++
T Consensus 700 G~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 700 GLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred ecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 9999999999974 55667655542 21 2235999999998754335555
Q ss_pred ecCC--CcCchHHHHHHHhh
Q 002040 818 ISEE--DAKYSPDLVKALEL 835 (976)
Q Consensus 818 ~~~~--d~~~~~~i~~~l~~ 835 (976)
++.. ...|-..+++.|..
T Consensus 780 lD~R~~~k~Yg~~~l~sLP~ 799 (820)
T PRK07246 780 LDRRILTKSYGKQILASLAE 799 (820)
T ss_pred ECCcccccHHHHHHHHhCCC
Confidence 5543 44466677666643
No 138
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.78 E-value=2.5e-17 Score=195.00 Aligned_cols=280 Identities=18% Similarity=0.181 Sum_probs=182.6
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+. |++.|.-+. +.-....|+.+.||.|||+++++|++...+. |..|-||+++..||.+-++++..++
T Consensus 73 lG~r-~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGLR-HFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCCC-CCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 5654 677776554 4445678999999999999999998655432 5668999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHH-HHHHhcC---CcccccCCceEEEecCccccc-ccCC-----
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSG---GKITNLRRVTYLVMDEADRMF-DMGF----- 634 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~-~~l~~~~---~~~~~l~~~~~vVlDEah~~~-~~~f----- 634 (976)
..+|+.|.++.++.+..+....+ .++|+++|..-|. ++|..+- ........+.|+||||+|.|+ |...
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiI 219 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLII 219 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceec
Confidence 99999999999988776654444 4899999997552 3333221 011124668899999999762 1100
Q ss_pred ----------chHHHHHHHhcCCC--------------------------------------------------------
Q 002040 635 ----------EPQITRIVQNIRPD-------------------------------------------------------- 648 (976)
Q Consensus 635 ----------~~~i~~il~~~~~~-------------------------------------------------------- 648 (976)
...+..++..+..+
T Consensus 220 Sg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~ 299 (870)
T CHL00122 220 SGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNV 299 (870)
T ss_pred cCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCC
Confidence 00000111111000
Q ss_pred ------------------------------------------------------------CcEEEEeccCcHHHHHHHHH
Q 002040 649 ------------------------------------------------------------RQTVLFSATFPRQVEILARK 668 (976)
Q Consensus 649 ------------------------------------------------------------~q~i~~SAT~~~~~~~l~~~ 668 (976)
..+.+||+|.......+ ..
T Consensus 300 dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef-~~ 378 (870)
T CHL00122 300 HYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEF-EK 378 (870)
T ss_pred cEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHH-HH
Confidence 12456666654443333 33
Q ss_pred HcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCC
Q 002040 669 VLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (976)
Q Consensus 669 ~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~ 747 (976)
.++-.+...+...+...... ....+.....|+..++..+...+. +.||||-|.|+...+.|+..|...|+++.++++.
T Consensus 379 iY~l~vv~IPtnkp~~R~d~-~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk 457 (870)
T CHL00122 379 IYNLEVVCIPTHRPMLRKDL-PDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAK 457 (870)
T ss_pred HhCCCEEECCCCCCccceeC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCC
Confidence 33333333222222222111 123345556788888877766554 4599999999999999999999999999999986
Q ss_pred CCH-HHHHHHHHHhccCC-ccEEEecCcccccCCCC
Q 002040 748 KDQ-TDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (976)
Q Consensus 748 ~~~-~~R~~~~~~F~~g~-~~vLVaT~v~~~GlDi~ 781 (976)
-.. ..=..++.. .|. -.|.|||++|+||.||.
T Consensus 458 ~~~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 458 PENVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred CccchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 422 222233322 444 46999999999999984
No 139
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.77 E-value=2.6e-17 Score=190.30 Aligned_cols=163 Identities=19% Similarity=0.227 Sum_probs=115.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh-hc
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK-VM 567 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~-~~ 567 (976)
.|-.+|.+.+..+-.+..++|+|||.+|||.+-- .++..++.. .....||+++||.+|++|+...+...+. ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisf-Y~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISF-YAIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccH-HHHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 5778999999999999999999999999998633 334443332 2456799999999999999887776552 22
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~ 647 (976)
-...+.+.|......++.. -+|+|+|+-|+.|..+|...........++.|||+||+|.+.++.-...+..++..+
T Consensus 585 ~~rg~sl~g~ltqEYsinp--~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSINP--WNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCCc--hhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 2333344444433333331 259999999999988886632223456789999999999987765444444444444
Q ss_pred CCcEEEEeccCcHH
Q 002040 648 DRQTVLFSATFPRQ 661 (976)
Q Consensus 648 ~~q~i~~SAT~~~~ 661 (976)
.+.+|++|||+.+.
T Consensus 661 ~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNP 674 (1330)
T ss_pred CCCeeEEecccCCH
Confidence 36699999997543
No 140
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.76 E-value=1.7e-17 Score=185.36 Aligned_cols=124 Identities=21% Similarity=0.389 Sum_probs=109.4
Q ss_pred cchHHHHHHHHHHhhhcC-CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccC-CccEEEecCcc
Q 002040 697 ESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN-VCNLLIATSVA 774 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~~~-~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~vLVaT~v~ 774 (976)
.+.|+..|-.+|..+... .++|+|++...+++.+..||.-.+|..+.+.|.....+|..++..|+.. .+-+|++|.++
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccC
Confidence 355777777777776654 4999999999999999999999999999999999999999999999965 46789999999
Q ss_pred cccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccE--EEEEecC
Q 002040 775 ARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AITFISE 820 (976)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~--~~~~~~~ 820 (976)
+-|||+..+++||+||..|+|..-.|.+.||+|-|+.-. +|.+++.
T Consensus 1106 GLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1106 GLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITR 1153 (1185)
T ss_pred cccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccc
Confidence 999999999999999999999999999999999998654 5555554
No 141
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=9e-16 Score=181.32 Aligned_cols=279 Identities=18% Similarity=0.193 Sum_probs=180.0
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|. .|++.|..+--++ ....|..+.||-|||+++.+|++...+. |..|-||+++.-||..-++++..+.
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 454 3666665554444 5667999999999999999998866553 5568899999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-----HHHHHhcCCcccccCCceEEEecCccccc-ccCCc---
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-----IDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFE--- 635 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-----~~~l~~~~~~~~~l~~~~~vVlDEah~~~-~~~f~--- 635 (976)
..+|+.|.++.++....+.... -.|+|++||+..| .+.+...... .....+.|+||||+|.++ |....
T Consensus 151 ~~LGLtvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDYLRDnm~~~~~~-~vqR~~~faIVDEvDSILIDEArTPLI 227 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKN--YACDITYATNSELGFDYLRDNMATDISE-VVQRPFNYCVIDEVDSILIDEARTPLI 227 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHh--cCCCeEEecCCcccccchhhhhcccccc-cccCccceEEEecccceeeccCCCccc
Confidence 9999999999888766554333 3599999999987 4544432211 235678899999999763 21100
Q ss_pred ------------hHHHHHHHhcCC--------------CC----------------------------------------
Q 002040 636 ------------PQITRIVQNIRP--------------DR---------------------------------------- 649 (976)
Q Consensus 636 ------------~~i~~il~~~~~--------------~~---------------------------------------- 649 (976)
.....+...+.. ..
T Consensus 228 ISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~ 307 (939)
T PRK12902 228 ISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAK 307 (939)
T ss_pred ccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHH
Confidence 001111111111 01
Q ss_pred --------------------------------------------------------------------cEEEEeccCcHH
Q 002040 650 --------------------------------------------------------------------QTVLFSATFPRQ 661 (976)
Q Consensus 650 --------------------------------------------------------------------q~i~~SAT~~~~ 661 (976)
++.+||+|....
T Consensus 308 ~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te 387 (939)
T PRK12902 308 ELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTE 387 (939)
T ss_pred HHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHH
Confidence 133444443322
Q ss_pred HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCC
Q 002040 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYP 740 (976)
Q Consensus 662 ~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~ 740 (976)
...+.. .++-++...+...+....... ...+.....|+..++..+...+. +.||||-|.|++..+.|+..|...|++
T Consensus 388 ~~Ef~~-iY~l~Vv~IPTnkP~~R~d~~-d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~ 465 (939)
T PRK12902 388 EVEFEK-TYKLEVTVIPTNRPRRRQDWP-DQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIP 465 (939)
T ss_pred HHHHHH-HhCCcEEEcCCCCCeeeecCC-CeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCc
Confidence 222222 222222222111111111111 12344556788888887777664 459999999999999999999999999
Q ss_pred ceeccCCC-CHHHHHHHHHHhccCC-ccEEEecCcccccCCCC
Q 002040 741 CLSLHGAK-DQTDRESTISDFKSNV-CNLLIATSVAARGLDVK 781 (976)
Q Consensus 741 ~~~lhg~~-~~~~R~~~~~~F~~g~-~~vLVaT~v~~~GlDi~ 781 (976)
+.+++..- ....-..|+.. .|. -.|-|||++|+||.||.
T Consensus 466 h~vLNAk~~~~~~EA~IIa~--AG~~GaVTIATNMAGRGTDIk 506 (939)
T PRK12902 466 HNLLNAKPENVEREAEIVAQ--AGRKGAVTIATNMAGRGTDII 506 (939)
T ss_pred hheeeCCCcchHhHHHHHHh--cCCCCcEEEeccCCCCCcCEe
Confidence 99999863 22222233322 454 35999999999999985
No 142
>COG4889 Predicted helicase [General function prediction only]
Probab=99.74 E-value=5.5e-18 Score=193.04 Aligned_cols=325 Identities=19% Similarity=0.267 Sum_probs=193.2
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC----CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeE
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG 543 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g----~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~v 543 (976)
.|..+.. ..+...|.-..-.+|+|+|++||...+.| ...-+++.+|+|||++.+ -+...+.. .++
T Consensus 141 DW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~---------~~i 209 (1518)
T COG4889 141 DWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA---------ARI 209 (1518)
T ss_pred ChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh---------hhe
Confidence 4444433 23333444445568999999999998865 235667889999998854 34444432 478
Q ss_pred EEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH-------------------HHH-HHH-----hcCCeEEEeCc
Q 002040 544 LIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA-------------------QQI-SEL-----KRGTEIVVCTP 598 (976)
Q Consensus 544 LIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~-------------------~~~-~~l-----~~~~~Iiv~Tp 598 (976)
|+|||+..|..|...++..- +.+.+....++...... ..+ ..+ ..+--||++|+
T Consensus 210 L~LvPSIsLLsQTlrew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTY 288 (1518)
T COG4889 210 LFLVPSISLLSQTLREWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTY 288 (1518)
T ss_pred EeecchHHHHHHHHHHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcc
Confidence 99999999999988777653 23455555444432111 111 111 12557999999
Q ss_pred hhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC-----CCcEEEEeccCcHHH-----------
Q 002040 599 GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP-----DRQTVLFSATFPRQV----------- 662 (976)
Q Consensus 599 ~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~-----~~q~i~~SAT~~~~~----------- 662 (976)
..|..+-..+. .-+..+++||+||||+.....+...-...+..+.. ..+.+.|||||.--.
T Consensus 289 QSl~~i~eAQe---~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s 365 (1518)
T COG4889 289 QSLPRIKEAQE---AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHS 365 (1518)
T ss_pred cchHHHHHHHH---cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcc
Confidence 99877655443 34678999999999985422111111111111111 123578888862110
Q ss_pred ----------------------HHHHHHHcCCCeEEEeCC-cccccCCceEEEEecCc-------chHHHHHHHHHHhhh
Q 002040 663 ----------------------EILARKVLNKPVEIQVGG-RSVVNKDITQLVEVRPE-------SDRFLRLLELLGEWY 712 (976)
Q Consensus 663 ----------------------~~l~~~~l~~~~~i~~~~-~~~~~~~i~q~~~~~~~-------~~k~~~l~~~l~~~~ 712 (976)
+.+...+|.+.-++.+.. .......+ +.....+. ..++.-...-|....
T Consensus 366 ~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~-~~~~~~~~~~L~~dd~~kIvG~wnGlakr~ 444 (1518)
T COG4889 366 AELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVL-QSVLSGPSKGLALDDVSKIVGCWNGLAKRN 444 (1518)
T ss_pred ceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhh-hhhccCcccccchhhhhhhhhhhhhhhhhc
Confidence 112223333332221111 11111111 11111111 112222222221111
Q ss_pred --------------cCCcEEEEecCHHHHHHHHHHHHH---------------CCCCceeccCCCCHHHHHHHHH---Hh
Q 002040 713 --------------EKGKILIFVHSQEKCDALFRDLLK---------------HGYPCLSLHGAKDQTDRESTIS---DF 760 (976)
Q Consensus 713 --------------~~~kvLIF~~s~~~~~~l~~~L~~---------------~~~~~~~lhg~~~~~~R~~~~~---~F 760 (976)
+..+.|-||.++++...++..+.. ..+.|..+.|.|...+|...+. .|
T Consensus 445 g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~ 524 (1518)
T COG4889 445 GEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTF 524 (1518)
T ss_pred cccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCC
Confidence 012678899988877776665532 1345667889999999965543 44
Q ss_pred ccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC
Q 002040 761 KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (976)
Q Consensus 761 ~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~ 808 (976)
....++||--..++..|+|||.++.||+|++-.++.+.+|.+||+.|-
T Consensus 525 ~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 525 EPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 567899999999999999999999999999999999999999999994
No 143
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=8.3e-17 Score=176.06 Aligned_cols=345 Identities=14% Similarity=0.100 Sum_probs=235.1
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 480 ~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
..+..+.-.....+|.++|..+.+|+++++.-.|.+||.+++.+.....+...+ ....|++.|+.+++.....-
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~ 350 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKG 350 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCc
Confidence 445566667788999999999999999999999999999999988877765533 23468888999887643222
Q ss_pred HHH---HHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcC-CcccccCCceEEEecCcccccccCCc
Q 002040 560 IRK---FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFE 635 (976)
Q Consensus 560 ~~~---~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-~~~~~l~~~~~vVlDEah~~~~~~f~ 635 (976)
+.- ..+...-.++-.+.|............+..++++.|..+...+..+. -....+-...++++||+|..+.. |.
T Consensus 351 ~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~ 429 (1034)
T KOG4150|consen 351 QVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TK 429 (1034)
T ss_pred eEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hh
Confidence 110 01112233455666666666666667789999999998766543321 11122334567899999954321 22
Q ss_pred h----HHHHHHHhc-----CCCCcEEEEeccCcHHHHHHHHHHcCCC-eEEEeCCcccccCCceEEEEecCc--------
Q 002040 636 P----QITRIVQNI-----RPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPE-------- 697 (976)
Q Consensus 636 ~----~i~~il~~~-----~~~~q~i~~SAT~~~~~~~l~~~~l~~~-~~i~~~~~~~~~~~i~q~~~~~~~-------- 697 (976)
. ++..++..+ ..+.|++-.|||....+......+.-+- ..+.+.+.+.. ....+.+.++
T Consensus 430 ~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~---~K~~V~WNP~~~P~~~~~ 506 (1034)
T KOG4150|consen 430 ALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSS---EKLFVLWNPSAPPTSKSE 506 (1034)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCc---cceEEEeCCCCCCcchhh
Confidence 2 222332222 3568899999999887765554443333 33444443322 2233333221
Q ss_pred -chHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHH----CCC----CceeccCCCCHHHHHHHHHHhccCCccE
Q 002040 698 -SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLK----HGY----PCLSLHGAKDQTDRESTISDFKSNVCNL 767 (976)
Q Consensus 698 -~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~----~~~----~~~~lhg~~~~~~R~~~~~~F~~g~~~v 767 (976)
+.++.....++.+... +-++|-||+++..|+.|...... .+- .+..+.|+....+|.++...+-.|+..-
T Consensus 507 ~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~g 586 (1034)
T KOG4150|consen 507 KSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCG 586 (1034)
T ss_pred hhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeE
Confidence 3345555555555443 44999999999999887655433 221 3567889999999999999999999999
Q ss_pred EEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEe--cCCCcCchHHHHHHHh
Q 002040 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI--SEEDAKYSPDLVKALE 834 (976)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~--~~~d~~~~~~i~~~l~ 834 (976)
+|||++++.||||.+++.|++.++|.+++++.|..||+||..+...++.+. .+-|..|+..-...+.
T Consensus 587 iIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~ 655 (1034)
T KOG4150|consen 587 IIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFG 655 (1034)
T ss_pred EEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhC
Confidence 999999999999999999999999999999999999999998876655443 3556555554444443
No 144
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.72 E-value=6.5e-17 Score=155.73 Aligned_cols=120 Identities=42% Similarity=0.674 Sum_probs=112.2
Q ss_pred chHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccc
Q 002040 698 SDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (976)
Q Consensus 698 ~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~ 776 (976)
+.|+..+..++.... ..+++||||++...++.++..|...++.+..+||.++..++..++..|.+|...|||+|.++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 378888888887764 4679999999999999999999998999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEE
Q 002040 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (976)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~ 817 (976)
|+|+|++++||++++|++...|+|++||+||.|+.|.|++|
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999999988764
No 145
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=3.9e-15 Score=186.87 Aligned_cols=133 Identities=16% Similarity=0.223 Sum_probs=94.8
Q ss_pred HHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHHCCC--CceeccCCCCHHHHHHHHHHhccCCccEEEecCccccc
Q 002040 702 LRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (976)
Q Consensus 702 ~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~G 777 (976)
..+...|.... .+|++|||++|......++..|..... .+..+.-+++...+..+++.|+.+.-.||++|..+..|
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEG 817 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCc
Confidence 45555554433 468999999999999999999976422 12223224444567889999999888999999999999
Q ss_pred CCCCC--CcEEEEeCCCC----CH--------------------------HHHHHHhcccCCCCCccEEEEEecCC--Cc
Q 002040 778 LDVKE--LELVINFDAPN----HY--------------------------EDYVHRVGRTGRAGRKGCAITFISEE--DA 823 (976)
Q Consensus 778 lDi~~--v~~VI~~d~p~----s~--------------------------~~y~Qr~GR~gR~g~~g~~~~~~~~~--d~ 823 (976)
||+|+ +.+||+...|. ++ ..+.|.+||+-|....-.++++++.. ..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R~~~k 897 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRRLTTT 897 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCccccc
Confidence 99998 57888876554 21 12259999999987654455566554 55
Q ss_pred CchHHHHHHHh
Q 002040 824 KYSPDLVKALE 834 (976)
Q Consensus 824 ~~~~~i~~~l~ 834 (976)
.|-..+++.|.
T Consensus 898 ~Yg~~~l~sLP 908 (928)
T PRK08074 898 SYGKYFLESLP 908 (928)
T ss_pred hHHHHHHHhCC
Confidence 56677777764
No 146
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.70 E-value=1.3e-14 Score=171.11 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=76.9
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhcc----CCccEEEecCcccccCCC--------
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS----NVCNLLIATSVAARGLDV-------- 780 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~----g~~~vLVaT~v~~~GlDi-------- 780 (976)
..|.+||.+.+...+..++..|...--..+.+.|..+ .+..+++.|+. |...||++|..+..||||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 4789999999999999999999653223345566443 34567888876 478999999999999999
Q ss_pred CC--CcEEEEeCCCCCH-------------------------HHHHHHhcccCCCCCc--cEEEEEecCC
Q 002040 781 KE--LELVINFDAPNHY-------------------------EDYVHRVGRTGRAGRK--GCAITFISEE 821 (976)
Q Consensus 781 ~~--v~~VI~~d~p~s~-------------------------~~y~Qr~GR~gR~g~~--g~~~~~~~~~ 821 (976)
|+ +.+||+...|..+ ..+.|-+||.-|.... -.+++++.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 34 8899986665311 2235889999997654 3344445443
No 147
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.66 E-value=3e-15 Score=168.59 Aligned_cols=121 Identities=19% Similarity=0.211 Sum_probs=103.1
Q ss_pred cchHHHHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhc--cC-CccEEEec
Q 002040 697 ESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK--SN-VCNLLIAT 771 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~--~g-~~~vLVaT 771 (976)
.+.|+..++..+...+ ...+++|..+-......+...|...|+.+..+||.....+|+.+++.|+ +| ....||+-
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439|consen 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred chhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEE
Confidence 4456666666665542 3458888888889999999999999999999999999999999999997 34 44566778
Q ss_pred CcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEE
Q 002040 772 SVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITF 817 (976)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~ 817 (976)
.+.+.|||+.+.+++|.+|+.|||+---|.+.|+.|.|++..++++
T Consensus 807 tAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 807 TAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred ccCcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 8999999999999999999999999999999999999998776664
No 148
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.65 E-value=1.5e-15 Score=167.21 Aligned_cols=266 Identities=22% Similarity=0.268 Sum_probs=176.9
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 584 (976)
+-++-+|||.||||.-++- ++.. ...+++..|.|-||..+++.+.. .|+.|..++|.......-
T Consensus 192 kIi~H~GPTNSGKTy~ALq----rl~~--------aksGvycGPLrLLA~EV~~r~na----~gipCdL~TGeE~~~~~~ 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRALQ----RLKS--------AKSGVYCGPLRLLAHEVYDRLNA----LGIPCDLLTGEERRFVLD 255 (700)
T ss_pred eEEEEeCCCCCchhHHHHH----HHhh--------hccceecchHHHHHHHHHHHhhh----cCCCccccccceeeecCC
Confidence 4467789999999987543 3332 23468999999999999888776 688888888765333221
Q ss_pred HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC-CCCcEEEEeccCcHHHH
Q 002040 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTVLFSATFPRQVE 663 (976)
Q Consensus 585 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~-~~~q~i~~SAT~~~~~~ 663 (976)
. ...+..+-||.++. .--..+++.||||++.|.+...+-.+.+.+--+. ...++.+ - +.+-
T Consensus 256 ~--~~~a~hvScTVEM~-----------sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG---e--psvl 317 (700)
T KOG0953|consen 256 N--GNPAQHVSCTVEMV-----------SVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG---E--PSVL 317 (700)
T ss_pred C--CCcccceEEEEEEe-----------ecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC---C--chHH
Confidence 1 12357777886643 1123488999999999988776555555443322 1122221 1 1222
Q ss_pred HHHHHHcC---CCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCC
Q 002040 664 ILARKVLN---KPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (976)
Q Consensus 664 ~l~~~~l~---~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~ 740 (976)
.+...++. +.+.+.. +....+-.-...++..|... ..|.+| .|-++..+-.+...+.+.|..
T Consensus 318 dlV~~i~k~TGd~vev~~-------------YeRl~pL~v~~~~~~sl~nl-k~GDCv-V~FSkk~I~~~k~kIE~~g~~ 382 (700)
T KOG0953|consen 318 DLVRKILKMTGDDVEVRE-------------YERLSPLVVEETALGSLSNL-KPGDCV-VAFSKKDIFTVKKKIEKAGNH 382 (700)
T ss_pred HHHHHHHhhcCCeeEEEe-------------ecccCcceehhhhhhhhccC-CCCCeE-EEeehhhHHHHHHHHHHhcCc
Confidence 34443332 2222221 11111111112333444333 345554 466777888888888888766
Q ss_pred -ceeccCCCCHHHHHHHHHHhcc--CCccEEEecCcccccCCCCCCcEEEEeCC---------CCCHHHHHHHhcccCCC
Q 002040 741 -CLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDA---------PNHYEDYVHRVGRTGRA 808 (976)
Q Consensus 741 -~~~lhg~~~~~~R~~~~~~F~~--g~~~vLVaT~v~~~GlDi~~v~~VI~~d~---------p~s~~~y~Qr~GR~gR~ 808 (976)
|.+|+|++++..|.+--..|++ +.++|||||+++++|||+ ++..||+|+. |.......|.+|||||.
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf 461 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRF 461 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhccccc
Confidence 9999999999999999999996 899999999999999999 8999998876 34677889999999998
Q ss_pred CC---ccEEEEEecC
Q 002040 809 GR---KGCAITFISE 820 (976)
Q Consensus 809 g~---~g~~~~~~~~ 820 (976)
|. .|.+.+|..+
T Consensus 462 ~s~~~~G~vTtl~~e 476 (700)
T KOG0953|consen 462 GSKYPQGEVTTLHSE 476 (700)
T ss_pred ccCCcCceEEEeeHh
Confidence 64 4777777653
No 149
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.64 E-value=4.5e-16 Score=135.46 Aligned_cols=78 Identities=35% Similarity=0.623 Sum_probs=75.6
Q ss_pred HHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCC
Q 002040 732 RDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAG 809 (976)
Q Consensus 732 ~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g 809 (976)
++|...++.+..+||++++.+|..+++.|.+|...|||||+++++|||+|.+++||+|++|+++..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 367888999999999999999999999999999999999999999999999999999999999999999999999986
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.63 E-value=1.5e-14 Score=172.61 Aligned_cols=129 Identities=24% Similarity=0.271 Sum_probs=105.3
Q ss_pred ecCcchHHHHHHHHHHhhhcC-CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC
Q 002040 694 VRPESDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (976)
Q Consensus 694 ~~~~~~k~~~l~~~l~~~~~~-~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~ 772 (976)
+.....|+..++..+...+.. .||||-|.|++..+.|+..|...|+++..|+......+-..+-+.=+. -.|-|||+
T Consensus 607 y~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATN 684 (1112)
T PRK12901 607 YKTKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATN 684 (1112)
T ss_pred ecCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEecc
Confidence 344567888888888777654 499999999999999999999999999999887654444443333233 35999999
Q ss_pred cccccCCCC--------CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcC
Q 002040 773 VAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (976)
Q Consensus 773 v~~~GlDi~--------~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~ 824 (976)
+|+||.||. +=-+||--..+.|.--..|..||+||.|.+|.+..|++-+|..
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccHH
Confidence 999999997 4468888889999999999999999999999999999876653
No 151
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.62 E-value=1.1e-14 Score=141.37 Aligned_cols=144 Identities=38% Similarity=0.568 Sum_probs=110.5
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 584 (976)
+++++.++||+|||++++.++...+.. ...+++||++|+..|+.|+...+..+... ++.+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468999999999999988888776554 23568999999999999999998887765 67777777777666555
Q ss_pred HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 585 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
.....+.+|+|+|++.+...+.... .....+.+|||||+|.+....+...............+++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~---~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLK---LSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCC---cchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 4555678999999999887775432 2345688999999998876654444333445556778899999996
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.60 E-value=7.2e-14 Score=178.35 Aligned_cols=121 Identities=25% Similarity=0.315 Sum_probs=108.1
Q ss_pred hHHHHHHHHH-HhhhcCC---cEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccC--CccEEEecC
Q 002040 699 DRFLRLLELL-GEWYEKG---KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSN--VCNLLIATS 772 (976)
Q Consensus 699 ~k~~~l~~~l-~~~~~~~---kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g--~~~vLVaT~ 772 (976)
.|...+..+| ......+ ++|||++.....+.+..+|...++.++.++|.++...|..++..|.++ ...+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 6777777888 4555444 799999999999999999999999999999999999999999999986 567888899
Q ss_pred cccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 002040 773 VAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 773 v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
+++.|||+.++++||+||++|+++...|.+.|++|.|++..+.++-.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~ 818 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRL 818 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEe
Confidence 99999999999999999999999999999999999999877666543
No 153
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.60 E-value=3e-14 Score=164.06 Aligned_cols=119 Identities=24% Similarity=0.257 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHC----------------------CCCceeccCCCCHHHHHHH
Q 002040 700 RFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDREST 756 (976)
Q Consensus 700 k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~R~~~ 756 (976)
|+..|+.+|...-. +.++|||.++...++.+..+|.-. |.....|.|......|..+
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 55556667665443 459999999999999999888642 5567889999999999999
Q ss_pred HHHhccCC----ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEe
Q 002040 757 ISDFKSNV----CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFI 818 (976)
Q Consensus 757 ~~~F~~g~----~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~ 818 (976)
...|++-. ..+||+|.+++.|||+-.++.||+||..|||+.-+|.|=|+.|.|+..-||+|-
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 99998542 358999999999999999999999999999999999999999999987777653
No 154
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=1.7e-14 Score=171.06 Aligned_cols=311 Identities=17% Similarity=0.243 Sum_probs=206.5
Q ss_pred cHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHH-HHHhhcC
Q 002040 491 MPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR-KFAKVMG 568 (976)
Q Consensus 491 ~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~-~~~~~~~ 568 (976)
.|+|.++++.+.+. .++++++|+|||||+++-++++. ......+++++|.-+.+..++..|. +|....|
T Consensus 1145 n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1145 NPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred CCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 78999999998855 56888899999999998887774 1234579999999999988877765 5666678
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-----CchHHHHHHH
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-----FEPQITRIVQ 643 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-----f~~~i~~il~ 643 (976)
..++.+.|..+..- .+....+|+|+||..+- ++. ..+.+++.|+||+|.+.... ..-.+..|..
T Consensus 1216 ~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d-~lq-------~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~ 1284 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDL---KLLQKGQVIISTPEQWD-LLQ-------SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIAS 1284 (1674)
T ss_pred ceEEecCCccccch---HHhhhcceEEechhHHH-HHh-------hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHH
Confidence 88888877766543 33345799999999983 331 45678999999999775221 1112556666
Q ss_pred hcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCC--ceEEEEecCcchHHHHH----HHHHHh-hhcCCc
Q 002040 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKD--ITQLVEVRPESDRFLRL----LELLGE-WYEKGK 716 (976)
Q Consensus 644 ~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~--i~q~~~~~~~~~k~~~l----~~~l~~-~~~~~k 716 (976)
++-...+++.+|..+.+.-. + .++...-.+++.....+.+. -.|.+........+..+ +..+.. ...+.+
T Consensus 1285 q~~k~ir~v~ls~~lana~d-~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~ 1361 (1674)
T KOG0951|consen 1285 QLEKKIRVVALSSSLANARD-L--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKP 1361 (1674)
T ss_pred HHHhheeEEEeehhhccchh-h--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 77777788888887654322 2 11122222222211111111 12222222222222221 222222 234568
Q ss_pred EEEEecCHHHHHHHHHHHHHC----------------------CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcc
Q 002040 717 ILIFVHSQEKCDALFRDLLKH----------------------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (976)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~----------------------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~ 774 (976)
.+||+++.+.|..++..|... .+++++-|.+++..+...+-..|..|.+.|+|...-
T Consensus 1362 ~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~- 1440 (1674)
T KOG0951|consen 1362 AIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD- 1440 (1674)
T ss_pred eEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-
Confidence 999999999998777665432 234444499999999999999999999999998766
Q ss_pred cccCCCCCCcEEEE----eCC------CCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHH
Q 002040 775 ARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828 (976)
Q Consensus 775 ~~GlDi~~v~~VI~----~d~------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~ 828 (976)
..|+-...--+||. ||- +..++...|++|+|.| .|.|++++......++..
T Consensus 1441 ~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykk 1501 (1674)
T KOG0951|consen 1441 CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKK 1501 (1674)
T ss_pred cccccccceEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHH
Confidence 77777654444442 433 4457889999999988 567888887665555443
No 155
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.57 E-value=1e-14 Score=149.30 Aligned_cols=156 Identities=19% Similarity=0.171 Sum_probs=101.7
Q ss_pred CCcHHHHHHHHHHhc-------CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~-------g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 561 (976)
+|+++|.+++..+.. +..+++.++||||||.+++..+..... ++||+||+..|+.|+...|.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 478999999999883 588999999999999987765555432 68999999999999999997
Q ss_pred HHHhhcCcEEEE-----------eeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC--------cccccCCceEEE
Q 002040 562 KFAKVMGVRCVP-----------VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG--------KITNLRRVTYLV 622 (976)
Q Consensus 562 ~~~~~~~~~~~~-----------~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~--------~~~~l~~~~~vV 622 (976)
.+.......... ...................|+++|...|...+..... .......+.+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111111 0111111111122234578999999999877654211 112345678999
Q ss_pred ecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 623 lDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
+||||++.... .+..++. .+...+|+|||||++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPFR 184 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S-
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCccC
Confidence 99999865432 1444444 566779999999863
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=1.8e-12 Score=159.42 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=62.3
Q ss_pred cCCCCCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
+.|..++|.|.+.+..+. .+.++|+.+|||+|||++.+.|++.++...+ ..+++++++.|..-..|+.+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 567778999998887654 6789999999999999999999998876532 3468999999998889999999
Q ss_pred HHH
Q 002040 561 RKF 563 (976)
Q Consensus 561 ~~~ 563 (976)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 884
No 157
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.56 E-value=1.7e-12 Score=159.55 Aligned_cols=117 Identities=21% Similarity=0.260 Sum_probs=82.6
Q ss_pred HHHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHHCCCC-ceeccCCCCHHHHHHHHHHhccCCc-cEEEecCcccc
Q 002040 701 FLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQTDRESTISDFKSNVC-NLLIATSVAAR 776 (976)
Q Consensus 701 ~~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~-~vLVaT~v~~~ 776 (976)
...+...|.... .++++|||++|...+..+...|...... .+..+|..+. ..+++.|..+.- .|||+|..++.
T Consensus 464 ~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~~~lv~~gsf~E 540 (654)
T COG1199 464 LAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEGLILVGGGSFWE 540 (654)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCCeEEEeeccccC
Confidence 333444443332 3568999999999999999999876542 4455555443 377888876554 89999999999
Q ss_pred cCCCCC--CcEEEEeCCCCC------------------------------HHHHHHHhcccCCCCCccEEEEEecC
Q 002040 777 GLDVKE--LELVINFDAPNH------------------------------YEDYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 777 GlDi~~--v~~VI~~d~p~s------------------------------~~~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
|||+++ +.+||+...|.- +....|.+||+-|.-....++++++.
T Consensus 541 GVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 541 GVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred cccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 999998 577888776642 23346999999997555444445544
No 158
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.55 E-value=3.3e-12 Score=155.81 Aligned_cols=116 Identities=22% Similarity=0.296 Sum_probs=82.2
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC-CCCceeccCCCCHHHHHHHHHHhc----cCCccEEEecCcccccCCCCC--CcEE
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFK----SNVCNLLIATSVAARGLDVKE--LELV 786 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~----~g~~~vLVaT~v~~~GlDi~~--v~~V 786 (976)
.+.+|||++|...+..++..|... ++. +.++|.. .+..++..|+ .|...||++|..+..|||+|+ +.+|
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~v 609 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQV 609 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEE
Confidence 557999999999999999998743 333 4456643 4667776665 467789999999999999998 7889
Q ss_pred EEeCCCC----CHH--------------------------HHHHHhcccCCCCCccEEEEEecCC--CcCchHHHHHHH
Q 002040 787 INFDAPN----HYE--------------------------DYVHRVGRTGRAGRKGCAITFISEE--DAKYSPDLVKAL 833 (976)
Q Consensus 787 I~~d~p~----s~~--------------------------~y~Qr~GR~gR~g~~g~~~~~~~~~--d~~~~~~i~~~l 833 (976)
|+...|. ++. .+.|.+||+-|....-.+++++++. ...|-..+++.|
T Consensus 610 II~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R~~~~~Yg~~~l~sL 688 (697)
T PRK11747 610 IITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRRLLTKRYGKRLLDAL 688 (697)
T ss_pred EEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcccccchhHHHHHHHhC
Confidence 9877653 221 1248899999986554455555543 334555665554
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.52 E-value=1.3e-12 Score=156.21 Aligned_cols=272 Identities=11% Similarity=0.122 Sum_probs=165.3
Q ss_pred cCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHH
Q 002040 511 AKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SEL 587 (976)
Q Consensus 511 a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l 587 (976)
+-+|||||.+|+-.+-..+.. |..+|||+|...|+.|+...|+..+. +..++.++++.+..+.. ..+
T Consensus 167 ~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 167 ALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred cCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHH
Confidence 336999999988777666553 66799999999999999998887642 26688888888766553 333
Q ss_pred hcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-cC----CchHHHHHHHhcCCCCcEEEEeccCcHH
Q 002040 588 KRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MG----FEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 588 ~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~-~~----f~~~i~~il~~~~~~~q~i~~SAT~~~~ 661 (976)
..| ..|||+|-..+ +..+.++++|||||-|--.. .+ |...-..++.....+..+|+.|||++-.
T Consensus 237 ~~G~~~IViGtRSAv----------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSle 306 (665)
T PRK14873 237 LRGQARVVVGTRSAV----------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAE 306 (665)
T ss_pred hCCCCcEEEEcceeE----------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHH
Confidence 444 68999996654 25788899999999994321 11 1222223344445678899999999766
Q ss_pred HHHHHHHHcCCCeEEEeCCccc--ccCCceEEEEecC------cch----HHHHHHHHHHhhhcCCcEEEEecCHHHHHH
Q 002040 662 VEILARKVLNKPVEIQVGGRSV--VNKDITQLVEVRP------ESD----RFLRLLELLGEWYEKGKILIFVHSQEKCDA 729 (976)
Q Consensus 662 ~~~l~~~~l~~~~~i~~~~~~~--~~~~i~q~~~~~~------~~~----k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~ 729 (976)
....+... ....+....... ..+.+ ..+.... ... --..++..|.+....|++|||+|.+..+-.
T Consensus 307 s~~~~~~g--~~~~~~~~~~~~~~~~P~v-~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrGyap~ 383 (665)
T PRK14873 307 AQALVESG--WAHDLVAPRPVVRARAPRV-RALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRGYVPS 383 (665)
T ss_pred HHHHHhcC--cceeeccccccccCCCCeE-EEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCCCCCe
Confidence 54433321 111111110000 00111 1111100 000 113466667766666799999997654322
Q ss_pred HH-----------------------------------------------------------HHHHHC--CCCceeccCCC
Q 002040 730 LF-----------------------------------------------------------RDLLKH--GYPCLSLHGAK 748 (976)
Q Consensus 730 l~-----------------------------------------------------------~~L~~~--~~~~~~lhg~~ 748 (976)
|. +.|... +.++..+
T Consensus 384 l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~---- 459 (665)
T PRK14873 384 LACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS---- 459 (665)
T ss_pred eEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE----
Confidence 11 111110 1111111
Q ss_pred CHHHHHHHHHHhccCCccEEEecC----cccccCCCCCCcEEEEeCCCC------------CHHHHHHHhcccCCCCCcc
Q 002040 749 DQTDRESTISDFKSNVCNLLIATS----VAARGLDVKELELVINFDAPN------------HYEDYVHRVGRTGRAGRKG 812 (976)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~vLVaT~----v~~~GlDi~~v~~VI~~d~p~------------s~~~y~Qr~GR~gR~g~~g 812 (976)
+++.++..|. ++.+|||+|. ++. +++.+|+++|... ...-+.|.+||+||.+..|
T Consensus 460 ---d~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G 530 (665)
T PRK14873 460 ---GGDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGG 530 (665)
T ss_pred ---ChHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCC
Confidence 2345778886 5899999998 555 3667777766532 1344578899999998899
Q ss_pred EEEEEe
Q 002040 813 CAITFI 818 (976)
Q Consensus 813 ~~~~~~ 818 (976)
.+++..
T Consensus 531 ~V~iq~ 536 (665)
T PRK14873 531 QVVVVA 536 (665)
T ss_pred EEEEEe
Confidence 998864
No 160
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.52 E-value=5.5e-13 Score=160.30 Aligned_cols=313 Identities=22% Similarity=0.238 Sum_probs=178.0
Q ss_pred CCCcHHHHHHHHHHhc--------CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMS--------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~--------g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
...+.+|-.|+..+.. |-=+|-.|.||||||++=+-.|. .|.. ...|.+..|..-.|.|..|.-..
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd-----~~~g~RfsiALGLRTLTLQTGda 480 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD-----DKQGARFAIALGLRSLTLQTGHA 480 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC-----CCCCceEEEEccccceeccchHH
Confidence 3456789999988764 12255569999999987443333 3332 23466777777888888888777
Q ss_pred HHHHHhhcCcEEEEeeCCCChHHHHH-------------------------------------------HHhc-------
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVAQQIS-------------------------------------------ELKR------- 589 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~~~~~-------------------------------------------~l~~------- 589 (976)
++.-...-.-.+.+++||....+... .+..
T Consensus 481 ~r~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rl 560 (1110)
T TIGR02562 481 LKTRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTL 560 (1110)
T ss_pred HHHhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhh
Confidence 77654433444555555433221110 0000
Q ss_pred -CCeEEEeCchhHHHHHHhcC--CcccccC--CceEEEecCcccccccCCchHHHHHHHhc-CCCCcEEEEeccCcHHHH
Q 002040 590 -GTEIVVCTPGRMIDILCTSG--GKITNLR--RVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (976)
Q Consensus 590 -~~~Iiv~Tp~~L~~~l~~~~--~~~~~l~--~~~~vVlDEah~~~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~~~ 663 (976)
...|+|||+..++....... .....+- .-+.|||||+|.+-... ...+..++..+ .....+|+||||+|+.+.
T Consensus 561 l~apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 561 LAAPVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred hcCCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 25799999999887663221 1111111 12579999999642211 12233333311 235679999999999764
Q ss_pred HH-HHH----------HcCC---CeEEEe---CCcccc--------------------------cCCc---eEEEEecCc
Q 002040 664 IL-ARK----------VLNK---PVEIQV---GGRSVV--------------------------NKDI---TQLVEVRPE 697 (976)
Q Consensus 664 ~l-~~~----------~l~~---~~~i~~---~~~~~~--------------------------~~~i---~q~~~~~~~ 697 (976)
.. ... ..+. ++.|.. ...... ...+ -..+.+...
T Consensus 640 ~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~ 719 (1110)
T TIGR02562 640 KTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSL 719 (1110)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCc
Confidence 32 222 2222 111110 000000 0001 111111111
Q ss_pred c----hHHHHHHHHH----Hhhh-------c-CCc----EEEEecCHHHHHHHHHHHHHC------CCCceeccCCCCHH
Q 002040 698 S----DRFLRLLELL----GEWY-------E-KGK----ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGAKDQT 751 (976)
Q Consensus 698 ~----~k~~~l~~~l----~~~~-------~-~~k----vLIF~~s~~~~~~l~~~L~~~------~~~~~~lhg~~~~~ 751 (976)
. .....+...| ...+ + .++ .||-+.++..+..++..|... .+.+++||+..+..
T Consensus 720 ~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~ 799 (1110)
T TIGR02562 720 PRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLL 799 (1110)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHH
Confidence 1 1222222222 1111 1 122 478888888888888888754 24578899999888
Q ss_pred HHHHHHHHh----------------------cc----CCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhccc
Q 002040 752 DRESTISDF----------------------KS----NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRT 805 (976)
Q Consensus 752 ~R~~~~~~F----------------------~~----g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~ 805 (976)
.|..+.+.. .+ +...|+|||++++.|+|+. .+++| .-|.++...+|++||+
T Consensus 800 ~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~--~~~~~~~sliQ~aGR~ 876 (1110)
T TIGR02562 800 LRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAI--ADPSSMRSIIQLAGRV 876 (1110)
T ss_pred HHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeee--eccCcHHHHHHHhhcc
Confidence 777655442 12 4668999999999999994 55554 3456688999999999
Q ss_pred CCCCC
Q 002040 806 GRAGR 810 (976)
Q Consensus 806 gR~g~ 810 (976)
.|.|.
T Consensus 877 ~R~~~ 881 (1110)
T TIGR02562 877 NRHRL 881 (1110)
T ss_pred ccccc
Confidence 99764
No 161
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.47 E-value=1.3e-13 Score=120.73 Aligned_cols=81 Identities=40% Similarity=0.651 Sum_probs=77.4
Q ss_pred HHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC
Q 002040 729 ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA 808 (976)
Q Consensus 729 ~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~ 808 (976)
.++..|...++.+..+||.++..++..++..|..|...|||+|++++.|+|++.+++||++++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 002040 809 G 809 (976)
Q Consensus 809 g 809 (976)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 162
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.42 E-value=4.9e-11 Score=149.12 Aligned_cols=308 Identities=19% Similarity=0.253 Sum_probs=177.4
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 584 (976)
+..+|+.-||||||++.+..+ ..+... ...|.|+|||-++.|-.|+.++|..+........ ...+.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A-~~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLA-RLLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHH-HHHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 469999999999999854443 333332 3578999999999999999999999876543222 233344444
Q ss_pred HHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHH
Q 002040 585 SELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVE 663 (976)
Q Consensus 585 ~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~ 663 (976)
..+..+ ..|||+|-..|...+...... ..-..--+||+|||||.- ++.....+-..+ ++...++||+||--.-.
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~-~~~~~~ivvI~DEaHRSQ---~G~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELE-LLKRKNVVVIIDEAHRSQ---YGELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhccccc-ccCCCcEEEEEechhhcc---ccHHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 445444 489999999998777543111 112223478999999853 343333333333 44779999999743322
Q ss_pred HH-HHHHcCCCeEEEeCCcccccCCceEEEEecC-------cc--------------------h----------------
Q 002040 664 IL-ARKVLNKPVEIQVGGRSVVNKDITQLVEVRP-------ES--------------------D---------------- 699 (976)
Q Consensus 664 ~l-~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~-------~~--------------------~---------------- 699 (976)
.. ....++.++.............+...+.... .. .
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 22 2334444443332222111111111110000 00 0
Q ss_pred -HHHH----HHHHHHh-hhcCCcEEEEecCHHHHHHHHHHHHHC-----------C--------C----CceeccCCCCH
Q 002040 700 -RFLR----LLELLGE-WYEKGKILIFVHSQEKCDALFRDLLKH-----------G--------Y----PCLSLHGAKDQ 750 (976)
Q Consensus 700 -k~~~----l~~~l~~-~~~~~kvLIF~~s~~~~~~l~~~L~~~-----------~--------~----~~~~lhg~~~~ 750 (976)
+... +...+.. .....++++.|.+...|..+.+.+... + + .....|... .
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-K 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-H
Confidence 0000 0111111 112357888888887555555443321 0 0 000001111 1
Q ss_pred HHHHHHHHHh--ccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC--C--CccEEEEEecCCCcC
Q 002040 751 TDRESTISDF--KSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--G--RKGCAITFISEEDAK 824 (976)
Q Consensus 751 ~~R~~~~~~F--~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~--g--~~g~~~~~~~~~d~~ 824 (976)
.........| .....+|||.++.+-+|+|.|.++++. +|-|.-....+|.+.|+.|. + ..|.++.|+.
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g----- 651 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG----- 651 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc-----
Confidence 2223334443 456789999999999999999999888 78888889999999999995 3 2355555554
Q ss_pred chHHHHHHHh
Q 002040 825 YSPDLVKALE 834 (976)
Q Consensus 825 ~~~~i~~~l~ 834 (976)
....+.+++.
T Consensus 652 l~e~l~~Al~ 661 (962)
T COG0610 652 LKEALKKALK 661 (962)
T ss_pred hHHHHHHHHH
Confidence 4555556554
No 163
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.40 E-value=1.3e-12 Score=150.55 Aligned_cols=307 Identities=22% Similarity=0.312 Sum_probs=192.8
Q ss_pred HHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEe
Q 002040 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (976)
Q Consensus 495 ~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 574 (976)
...+..+..+.-+++-+.||+|||.++...+|..+..... +-...+.+..|++..+.-+.+.+.. .-+-.+.-.
T Consensus 384 ~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~---g~~~na~v~qprrisaisiaerva~---er~e~~g~t 457 (1282)
T KOG0921|consen 384 SEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSN---GASFNAVVSQPRRISAISLAERVAN---ERGEEVGET 457 (1282)
T ss_pred HHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccc---cccccceeccccccchHHHHHHHHH---hhHHhhccc
Confidence 3444555566778888999999999999999988876531 2223456777998887766554432 222222223
Q ss_pred eCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccc-cccCCchHHHHHHHhcCCCCcEE
Q 002040 575 YGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM-FDMGFEPQITRIVQNIRPDRQTV 652 (976)
Q Consensus 575 ~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~-~~~~f~~~i~~il~~~~~~~q~i 652 (976)
+|.+.... ..+.. ---|.+||-+.|+..+.+ -+..+.++|+||.|.. .+..|...+.+-+....++..++
T Consensus 458 vgy~vRf~--Sa~prpyg~i~fctvgvllr~~e~------glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~ 529 (1282)
T KOG0921|consen 458 CGYNVRFD--SATPRPYGSIMFCTVGVLLRMMEN------GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVV 529 (1282)
T ss_pred cccccccc--ccccccccceeeeccchhhhhhhh------cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhh
Confidence 33332221 11222 236889999999888865 3566889999999932 33345544444444444555666
Q ss_pred EEeccCcHHHHHHHHHHcCCCeEEEeCCcccccC-----CceEEE--------------------------------E--
Q 002040 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-----DITQLV--------------------------------E-- 693 (976)
Q Consensus 653 ~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~-----~i~q~~--------------------------------~-- 693 (976)
+||||+... ++..++.....+.+.+..++.. .+.+.. .
T Consensus 530 lmsatIdTd---~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 530 LMSATIDTD---LFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hhhcccchh---hhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 666665433 2222222222222211111100 000000 0
Q ss_pred ------------ecCcchHHHHHHHHHHhhh----cCCcEEEEecCHHHHHHHHHHHHHC-------CCCceeccCCCCH
Q 002040 694 ------------VRPESDRFLRLLELLGEWY----EKGKILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQ 750 (976)
Q Consensus 694 ------------~~~~~~k~~~l~~~l~~~~----~~~kvLIF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~ 750 (976)
..........|++.|.... -.+-|+||.+.-..+..|+..|..+ .+.++.+|+.+..
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~ 686 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTS 686 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhccc
Confidence 0000011112233322221 2467999999999999999998765 4789999999999
Q ss_pred HHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC------------------CCCHHHHHHHhcccCCCCCcc
Q 002040 751 TDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKG 812 (976)
Q Consensus 751 ~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~Qr~GR~gR~g~~g 812 (976)
.+..+++.....|..++|++|+++...+.|.++.+||+.+. +.+..+.+|+.||+||. ++|
T Consensus 687 ~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G 765 (1282)
T KOG0921|consen 687 QEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPG 765 (1282)
T ss_pred HhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-ccc
Confidence 99999999999999999999999999999999888886332 33456678999999997 588
Q ss_pred EEEEEec
Q 002040 813 CAITFIS 819 (976)
Q Consensus 813 ~~~~~~~ 819 (976)
.|+.+++
T Consensus 766 ~~f~lcs 772 (1282)
T KOG0921|consen 766 FCFHLCS 772 (1282)
T ss_pred ccccccH
Confidence 8888764
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.38 E-value=5.3e-11 Score=140.17 Aligned_cols=326 Identities=16% Similarity=0.194 Sum_probs=191.4
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 585 (976)
-.+|.+|+|||||.+.+-++-..+. . ....+|+|+..+.|+.++...++.. ++.-...|......
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~-~------~~~~VLvVShRrSL~~sL~~rf~~~----~l~gFv~Y~d~~~~---- 115 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALK-N------PDKSVLVVSHRRSLTKSLAERFKKA----GLSGFVNYLDSDDY---- 115 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhcc-C------CCCeEEEEEhHHHHHHHHHHHHhhc----CCCcceeeeccccc----
Confidence 3577799999999875444433322 1 2567999999999999998887753 22111122211110
Q ss_pred HHh-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHH------H-HHHhcCCCCcEEEEecc
Q 002040 586 ELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT------R-IVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 586 ~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~------~-il~~~~~~~q~i~~SAT 657 (976)
.+. ...+-++++...|..+.. ..+.++++|||||+-..+..-|.+.+. . +...++....+|++-||
T Consensus 116 ~i~~~~~~rLivqIdSL~R~~~------~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ 189 (824)
T PF02399_consen 116 IIDGRPYDRLIVQIDSLHRLDG------SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDAD 189 (824)
T ss_pred cccccccCeEEEEehhhhhccc------ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCC
Confidence 011 124566667666644421 246779999999998665443332222 2 23345666789999999
Q ss_pred CcHHHHHHHHHHcCCC-eEEEeCCcccccCCceEEEEe------------c-----------------------CcchHH
Q 002040 658 FPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEV------------R-----------------------PESDRF 701 (976)
Q Consensus 658 ~~~~~~~l~~~~l~~~-~~i~~~~~~~~~~~i~q~~~~------------~-----------------------~~~~k~ 701 (976)
+...+-.++..+.+.. +.+.+..-..+...-.+.+.. . ......
T Consensus 190 ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (824)
T PF02399_consen 190 LNDQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDET 269 (824)
T ss_pred CCHHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchh
Confidence 9998888888776543 333322111100000000000 0 001111
Q ss_pred HHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCC
Q 002040 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVK 781 (976)
Q Consensus 702 ~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~ 781 (976)
..+-.++..+..+.+|-||+.|...++.++......+..++.++|..+..+.. . =++++|||.|+++..||++.
T Consensus 270 tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv~----~--W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 270 TFFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDVE----S--WKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred hHHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccccc----c--ccceeEEEEeceEEEEeccc
Confidence 22223333444566888999999999999999998889999999877766332 2 25689999999999999997
Q ss_pred CC--cEEEEeCCC----CCHHHHHHHhcccCCCCCccEEEEEecCC----CcCchHHHHHHHhhccCCCChHH----HHH
Q 002040 782 EL--ELVINFDAP----NHYEDYVHRVGRTGRAGRKGCAITFISEE----DAKYSPDLVKALELSEQVVPDDL----KAL 847 (976)
Q Consensus 782 ~v--~~VI~~d~p----~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~----d~~~~~~i~~~l~~~~~~vp~~l----~~l 847 (976)
.. +-|+-|=-| .++.+..|++||+-.. .....++++... +.-+.+-|++..-.....=|... ..+
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~~~~~~~~~tpmlLNh~i~~~~~Wp~~~~~vtn~l 422 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDASGARSEPIFTPMLLNHVIPSCGGWPAQFSQVTNLL 422 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecccccCCCCCCcchhcccccCCCCCChhHHHHHHHH
Confidence 64 334444223 2355689999999544 366777777653 22233333332222222334333 445
Q ss_pred HHHHHHHHhhhh
Q 002040 848 ADSFMAKVNQGL 859 (976)
Q Consensus 848 ~~~~~~~~~~~~ 859 (976)
...|..+.....
T Consensus 423 c~~Fr~rC~~a~ 434 (824)
T PF02399_consen 423 CCDFRRRCAPAF 434 (824)
T ss_pred HHHHHHhhhhhh
Confidence 556666655444
No 165
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.28 E-value=9.4e-11 Score=139.10 Aligned_cols=316 Identities=22% Similarity=0.244 Sum_probs=196.2
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEE
Q 002040 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRC 571 (976)
Q Consensus 492 ~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~ 571 (976)
|+-.|.|-.+..+...|.-+.||-|||+++.+|+.-..+. |..|.|++..-=||.--..++..+...+|+.+
T Consensus 81 ~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsv 152 (822)
T COG0653 81 HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLSV 152 (822)
T ss_pred hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCce
Confidence 4446666677777778999999999999999998765443 44577888888899999999999999999999
Q ss_pred EEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcC---CcccccCCceEEEecCccccc-cc--------C---C-
Q 002040 572 VPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DM--------G---F- 634 (976)
Q Consensus 572 ~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~---~~~~~l~~~~~vVlDEah~~~-~~--------~---f- 634 (976)
.+...+.+..+....+. |+|.++|...| .++|..+- ..-..+..+.|.|+||++.++ +. | .
T Consensus 153 G~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~~~~ 230 (822)
T COG0653 153 GVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPAEDS 230 (822)
T ss_pred eeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeecccccC
Confidence 99999998777665554 89999998775 23332210 000123457899999999652 10 1 1
Q ss_pred ---chHHHHHHHhcCCC--------CcEEEEec-----------------------------------------------
Q 002040 635 ---EPQITRIVQNIRPD--------RQTVLFSA----------------------------------------------- 656 (976)
Q Consensus 635 ---~~~i~~il~~~~~~--------~q~i~~SA----------------------------------------------- 656 (976)
...+..++..+... .+.|.||-
T Consensus 231 ~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd 310 (822)
T COG0653 231 SELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYIVRD 310 (822)
T ss_pred chHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeEEec
Confidence 11122222222111 01111111
Q ss_pred --------------------------------------------------------------cCcHHHHHHHHHHcCCCe
Q 002040 657 --------------------------------------------------------------TFPRQVEILARKVLNKPV 674 (976)
Q Consensus 657 --------------------------------------------------------------T~~~~~~~l~~~~l~~~~ 674 (976)
|.-.....+...| +.-+
T Consensus 311 ~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY-~l~v 389 (822)
T COG0653 311 GEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY-GLDV 389 (822)
T ss_pred CeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc-CCce
Confidence 1000000000000 0000
Q ss_pred EEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHH
Q 002040 675 EIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDR 753 (976)
Q Consensus 675 ~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R 753 (976)
.+.+...+....+.. -..+.....|+..++..+...+. +.|+||-+.+++..+.+...|.+.|++...+...-...+-
T Consensus 390 v~iPTnrp~~R~D~~-D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA 468 (822)
T COG0653 390 VVIPTNRPIIRLDEP-DLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREA 468 (822)
T ss_pred eeccCCCcccCCCCc-cccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHHHHH
Confidence 000000100000000 01233446688888887776664 5599999999999999999999999999888877664444
Q ss_pred HHHHHHhccCC-ccEEEecCcccccCCCCCCc-----------EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCC
Q 002040 754 ESTISDFKSNV-CNLLIATSVAARGLDVKELE-----------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (976)
Q Consensus 754 ~~~~~~F~~g~-~~vLVaT~v~~~GlDi~~v~-----------~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~ 821 (976)
..+.. .|. --|-|||++|++|-||.--. +||--.--.|----.|.-||+||.|-+|....|++-+
T Consensus 469 ~Iia~---AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSle 545 (822)
T COG0653 469 EIIAQ---AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLE 545 (822)
T ss_pred HHHhh---cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhhhhH
Confidence 33332 333 34889999999999986433 2333333333444458999999999999888777754
Q ss_pred C
Q 002040 822 D 822 (976)
Q Consensus 822 d 822 (976)
|
T Consensus 546 D 546 (822)
T COG0653 546 D 546 (822)
T ss_pred H
Confidence 3
No 166
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.27 E-value=1.8e-11 Score=135.78 Aligned_cols=161 Identities=19% Similarity=0.211 Sum_probs=94.8
Q ss_pred HHHHHHHHHh-------------cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 493 IQAQALPVIM-------------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 493 ~Q~~~i~~il-------------~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
+|..++.+++ ..+.+|++.++|+|||++++..+. .+...... ..-..+|||||. .+..||..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5888888774 335789999999999998665554 33332111 111248999999 777999999
Q ss_pred HHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHH
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~ 639 (976)
+.+++....+.+..+.|...............+|+|+|+..+.............--.+.+|||||+|.+-+ ......
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~--~~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKN--KDSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTT--TTSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccc--cccccc
Confidence 999986556666666655512222222234579999999998711000000011113489999999998843 334455
Q ss_pred HHHHhcCCCCcEEEEeccCcH
Q 002040 640 RIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 640 ~il~~~~~~~q~i~~SAT~~~ 660 (976)
..+..+. ....+++||||..
T Consensus 155 ~~l~~l~-~~~~~lLSgTP~~ 174 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTPIQ 174 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-SS
T ss_pred ccccccc-cceEEeecccccc
Confidence 5555565 5668999999743
No 167
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.18 E-value=6.7e-11 Score=111.59 Aligned_cols=135 Identities=18% Similarity=0.190 Sum_probs=79.9
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 583 (976)
|.-.++-..+|+|||.-.+.-++..... .+.++|||.|||.++..+++.++. .++++....-+.
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~----~~~~~~t~~~~~----- 67 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKG----LPVRFHTNARMR----- 67 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTT----SSEEEESTTSS------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhc----CCcccCceeeec-----
Confidence 4446778899999998766655554443 266899999999999888776653 444443222211
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhc--CCCCcEEEEeccCcHH
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQ 661 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~--~~~~q~i~~SAT~~~~ 661 (976)
....+.-|-|+|++.+...+... ..+.+|++||+||||-+ |..-. .....+..+ .....+|++|||+|..
T Consensus 68 --~~~g~~~i~vMc~at~~~~~~~p----~~~~~yd~II~DEcH~~-Dp~sI-A~rg~l~~~~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 68 --THFGSSIIDVMCHATYGHFLLNP----CRLKNYDVIIMDECHFT-DPTSI-AARGYLRELAESGEAKVIFMTATPPGS 139 (148)
T ss_dssp -----SSSSEEEEEHHHHHHHHHTS----SCTTS-SEEEECTTT---SHHHH-HHHHHHHHHHHTTS-EEEEEESS-TT-
T ss_pred --cccCCCcccccccHHHHHHhcCc----ccccCccEEEEeccccC-CHHHH-hhheeHHHhhhccCeeEEEEeCCCCCC
Confidence 12345688899999998887653 34678999999999953 21101 111122222 2335799999999876
Q ss_pred H
Q 002040 662 V 662 (976)
Q Consensus 662 ~ 662 (976)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 4
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.12 E-value=3.4e-09 Score=120.75 Aligned_cols=115 Identities=25% Similarity=0.290 Sum_probs=96.5
Q ss_pred CcEEEEecCHHHHHHHHHHHHHCC------------------CCceeccCCCCHHHHHHHHHHhccC---CccEEEecCc
Q 002040 715 GKILIFVHSQEKCDALFRDLLKHG------------------YPCLSLHGAKDQTDRESTISDFKSN---VCNLLIATSV 773 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~~------------------~~~~~lhg~~~~~~R~~~~~~F~~g---~~~vLVaT~v 773 (976)
.++|||.++...++.|...|.+.. ...+.+.|..+..+|++.|+.|++- ..-||++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 389999999999999999997752 3456788999999999999999853 2468999999
Q ss_pred ccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHH
Q 002040 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDL 829 (976)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i 829 (976)
...|||+-+++.+|+|++.|++..-.|.+-|+-|.|++.-||+|-.-.|...-..|
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 99999999999999999999999999999999999999888887654444433333
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.00 E-value=1.3e-08 Score=108.38 Aligned_cols=133 Identities=21% Similarity=0.291 Sum_probs=98.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|++.|..++-.+..|+ |+...||-|||++..+|++.+.+. |..|=|++.+.-||..=++++..|+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHH
Confidence 454 58888988887776665 999999999999988887766553 5568899999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHH-HHHHhcCCc---ccccCCceEEEecCccccc
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI-DILCTSGGK---ITNLRRVTYLVMDEADRMF 630 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~-~~l~~~~~~---~~~l~~~~~vVlDEah~~~ 630 (976)
..+|+.+.+++++.+......... ++|+++|...|. ++|..+... ......+.++||||||.|+
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 999999999999988665444444 789999999874 455443211 1124678899999999653
No 170
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.98 E-value=2.2e-07 Score=113.41 Aligned_cols=73 Identities=15% Similarity=0.261 Sum_probs=55.9
Q ss_pred CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC-----CC----ccEEE-EEecCCCcCchHHHHHHH
Q 002040 764 VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA-----GR----KGCAI-TFISEEDAKYSPDLVKAL 833 (976)
Q Consensus 764 ~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~-----g~----~g~~~-~~~~~~d~~~~~~i~~~l 833 (976)
...+|++-+++..|+|.|++-++..+....|...-.|.+||.-|. |. ..... ++++.....++..|++.+
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578999999999999999999999999888988999999999883 21 12222 234555566777777776
Q ss_pred hhc
Q 002040 834 ELS 836 (976)
Q Consensus 834 ~~~ 836 (976)
...
T Consensus 581 ~~~ 583 (986)
T PRK15483 581 NSD 583 (986)
T ss_pred Hhh
Confidence 544
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.98 E-value=5.9e-09 Score=114.07 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=59.4
Q ss_pred cCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~----~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
|+|. |+|.|.+.+. .+..|.++|+.||||+|||+++++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4554 6999999554 455788999999999999999999999887653211 02347899999999999887777
Q ss_pred HHH
Q 002040 561 RKF 563 (976)
Q Consensus 561 ~~~ 563 (976)
+++
T Consensus 82 ~~~ 84 (289)
T smart00489 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 172
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.98 E-value=5.9e-09 Score=114.07 Aligned_cols=76 Identities=26% Similarity=0.372 Sum_probs=59.4
Q ss_pred cCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~----~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
|+|. |+|.|.+.+. .+..|.++|+.||||+|||+++++|++.++...... ..+.+++|+++|..+..|....+
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l 81 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEEL 81 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHH
Confidence 4554 6999999554 455788999999999999999999999887653211 02347899999999999887777
Q ss_pred HHH
Q 002040 561 RKF 563 (976)
Q Consensus 561 ~~~ 563 (976)
+++
T Consensus 82 ~~~ 84 (289)
T smart00488 82 RKL 84 (289)
T ss_pred Hhc
Confidence 665
No 173
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.65 E-value=1.4e-07 Score=112.77 Aligned_cols=118 Identities=19% Similarity=0.209 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHhhhc-C-CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCC-c-cEEEecCcc
Q 002040 699 DRFLRLLELLGEWYE-K-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNV-C-NLLIATSVA 774 (976)
Q Consensus 699 ~k~~~l~~~l~~~~~-~-~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~-~vLVaT~v~ 774 (976)
.++..++.+|..... . .++|||++....+..++-.|...++.+..+.|.|+...|...+..|..+. . ..|++..++
T Consensus 522 ~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag 601 (674)
T KOG1001|consen 522 SKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAG 601 (674)
T ss_pred hhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHh
Confidence 344445555542211 1 38999999999999999999999999999999999999999999999554 2 356688999
Q ss_pred cccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEE
Q 002040 775 ARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAIT 816 (976)
Q Consensus 775 ~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~ 816 (976)
+.|||+..+.+||..|+.||+..--|.+-|++|.|+.-.+.+
T Consensus 602 ~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 602 KVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 999999999999999999999999999999999998766655
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.54 E-value=1.6e-06 Score=106.04 Aligned_cols=68 Identities=21% Similarity=0.132 Sum_probs=54.0
Q ss_pred cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCc
Q 002040 589 RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 589 ~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
....|+++||..|..-|..+ ..++..|+.|||||||++....-...+..++...++..-+.+|||.|.
T Consensus 6 ~~ggi~~~T~rIl~~DlL~~---ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~ 73 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLTG---IIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPE 73 (814)
T ss_pred hcCCEEEEechhhHhHHhcC---CCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCc
Confidence 34689999999987666543 367889999999999998766666667777777777788999999863
No 175
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.49 E-value=9.6e-06 Score=95.41 Aligned_cols=74 Identities=14% Similarity=0.208 Sum_probs=57.2
Q ss_pred CCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCC--CCcc-----------EEEEEecCCCcCchHHH
Q 002040 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRA--GRKG-----------CAITFISEEDAKYSPDL 829 (976)
Q Consensus 763 g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~--g~~g-----------~~~~~~~~~d~~~~~~i 829 (976)
...++|++-.++-.|+|=|+|-+++-+....|..+=.|.+||.-|. .+.| .-.+|+......++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3478999999999999999999999999999999999999999883 2222 23345555666677777
Q ss_pred HHHHhhc
Q 002040 830 VKALELS 836 (976)
Q Consensus 830 ~~~l~~~ 836 (976)
++.+...
T Consensus 562 qkEI~~~ 568 (985)
T COG3587 562 QKEINDE 568 (985)
T ss_pred HHHHHHh
Confidence 7766444
No 176
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.37 E-value=1.3e-07 Score=112.65 Aligned_cols=260 Identities=21% Similarity=0.237 Sum_probs=153.4
Q ss_pred CcHHHHHHHHHHh-cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 490 PMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 490 p~~~Q~~~i~~il-~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
..|+|.+.+..+. ...++++.+|||+|||++|-++++..+...| +.++++++|-.+|+..-.+.+.......|
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccCC
Confidence 3356666555444 3457888899999999999999988776653 46899999999999887777776655558
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHH-----
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ----- 643 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~----- 643 (976)
++++-+.|..... ...+ ..++|+|+||.....+..+ |.....+++++++|+||.|.+. .+..+.+..+..
T Consensus 1002 ~k~ie~tgd~~pd--~~~v-~~~~~~ittpek~dgi~Rs-w~~r~~v~~v~~iv~de~hllg-~~rgPVle~ivsr~n~~ 1076 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPD--VKAV-READIVITTPEKWDGISRS-WQTRKYVQSVSLIVLDEIHLLG-EDRGPVLEVIVSRMNYI 1076 (1230)
T ss_pred ceeEeccCccCCC--hhhe-ecCceEEcccccccCcccc-ccchhhhccccceeeccccccc-CCCcceEEEEeeccccC
Confidence 9999988877554 2222 3479999999998766543 4455678899999999999654 344444333322
Q ss_pred --hcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccC-CceEEE-------EecCcchHHHHHHHHHHhhhc
Q 002040 644 --NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK-DITQLV-------EVRPESDRFLRLLELLGEWYE 713 (976)
Q Consensus 644 --~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~-~i~q~~-------~~~~~~~k~~~l~~~l~~~~~ 713 (976)
...+..+++++|.-+. +...++.. ++....+ +..+.+.+ .+...+ .+.-...+.......+....+
T Consensus 1077 s~~t~~~vr~~glsta~~-na~dla~w-l~~~~~~--nf~~svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp 1152 (1230)
T KOG0952|consen 1077 SSQTEEPVRYLGLSTALA-NANDLADW-LNIKDMY--NFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSP 1152 (1230)
T ss_pred ccccCcchhhhhHhhhhh-ccHHHHHH-hCCCCcC--CCCcccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCC
Confidence 2223345555543332 22223333 2222111 11111111 111111 111111223345566777777
Q ss_pred CCcEEEEecCHHHHHHHHHHHHH----CCCCceeccCCCCHHHHHHHHHHhccCCcc
Q 002040 714 KGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 766 (976)
..++|||+.+......-+..|.. ..-+...++ |+..+-+.++....+...+
T Consensus 1153 ~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~--~de~e~e~~~~~~~d~~Lk 1207 (1230)
T KOG0952|consen 1153 IKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLN--MDELELEIIMSKVRDTNLK 1207 (1230)
T ss_pred CCceEEEeecccccccchHhHHhhccCCCCchhccC--CCHHHHHHHHHHhcccchh
Confidence 88999999987755444433322 122223333 3455666666666655443
No 177
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.24 E-value=1.6e-05 Score=90.79 Aligned_cols=84 Identities=23% Similarity=0.295 Sum_probs=67.2
Q ss_pred HHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 481 TIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 481 ~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
.+...++.++..-|..|+..+++..-.||+||+|+|||.+.. .|+.|+..+ ....|||++|+-..+.|+...|
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa-~IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhH-HHHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 455678889999999999999999999999999999998744 445555443 2456899999999999998888
Q ss_pred HHHHhhcCcEEEEee
Q 002040 561 RKFAKVMGVRCVPVY 575 (976)
Q Consensus 561 ~~~~~~~~~~~~~~~ 575 (976)
.+ .|++|+-+.
T Consensus 475 h~----tgLKVvRl~ 485 (935)
T KOG1802|consen 475 HK----TGLKVVRLC 485 (935)
T ss_pred Hh----cCceEeeee
Confidence 77 567776543
No 178
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.24 E-value=0.00025 Score=79.17 Aligned_cols=149 Identities=16% Similarity=0.239 Sum_probs=84.1
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHCCCC------ceeccCCCCHHHHHHHHHHh----ccCCccEEE--ecCcccccCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKHGYP------CLSLHGAKDQTDRESTISDF----KSNVCNLLI--ATSVAARGLDVK 781 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~~~~------~~~lhg~~~~~~R~~~~~~F----~~g~~~vLV--aT~v~~~GlDi~ 781 (976)
++.+++|+++.--.+.+.......|+- -+.+-+.-+..+-.-++... -+|.-.||+ |-.-...|+|+.
T Consensus 530 pdG~v~ff~sylYmesiv~~w~~~gil~ei~k~KL~fIetpD~~ETs~al~ny~~aC~~gRGavl~sVargkVsEgidF~ 609 (755)
T KOG1131|consen 530 PDGIVCFFPSYLYMESIVSRWYEQGILDEIMKYKLLFIETPDFRETSLALANYRYACDNGRGAVLLSVARGKVSEGIDFD 609 (755)
T ss_pred CCceEEEEehHHHHHHHHHHHHHHhHHHHHhhCceEEEeCCchhhhHHHHHHHHHHhcCCCCceEEEEecCccccCcccc
Confidence 357889999988777776665554431 12222322222223333322 356666664 556778999998
Q ss_pred CCc--EEEEeCCCCCHHH------------------------------HHHHhcccCCCCCccEEEEEe-cCC----Cc-
Q 002040 782 ELE--LVINFDAPNHYED------------------------------YVHRVGRTGRAGRKGCAITFI-SEE----DA- 823 (976)
Q Consensus 782 ~v~--~VI~~d~p~s~~~------------------------------y~Qr~GR~gR~g~~g~~~~~~-~~~----d~- 823 (976)
+-. .||+++.|..+.. ..|..||+-|. +.-+...++ ++. |.
T Consensus 610 hhyGR~ViM~gIP~qytesriLkarle~Lrd~~~irE~dflTFDAmRhaAQC~GrvLr~-K~dYg~mI~aDkRf~R~dKR 688 (755)
T KOG1131|consen 610 HHYGREVIMEGIPYQYTESRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCLGRVLRG-KTDYGLMIFADKRFSRGDKR 688 (755)
T ss_pred cccCceEEEEeccchhhHHHHHHHHHHHHHHHhcccccceechHhHHHHHHHHHHHHhc-cccceeeEeeehhhccccch
Confidence 866 8999999874321 13788999886 344444444 322 21
Q ss_pred -CchHHHHHHHhhccCCCChH-HHHHHHHHHHHHhhhhhhcc
Q 002040 824 -KYSPDLVKALELSEQVVPDD-LKALADSFMAKVNQGLEQAH 863 (976)
Q Consensus 824 -~~~~~i~~~l~~~~~~vp~~-l~~l~~~~~~~~~~~~~~~~ 863 (976)
+.-.+|...+......+..+ -..++..|+...++-+....
T Consensus 689 ~klp~wi~~~l~~~~~nlstd~a~~varrflR~maQp~~k~d 730 (755)
T KOG1131|consen 689 SKLPKWIRNHLFDAKLNLSTDMANQVARRFLRLMAQPFDKED 730 (755)
T ss_pred hhhhHHHHhhhhhhccCCCcchhHHHHHHHHHHhcCCCCccc
Confidence 12234444444444444332 25666777777766554433
No 179
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.23 E-value=1.1e-05 Score=85.55 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=50.5
Q ss_pred CcHHHHHHHHHHhcCCC-EEEEcCCCCchHHHHHHHHHHHHhcC-CCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 490 PMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQ-PPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d-~i~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
+.+.|..||..+++... .+|+||.|+|||.+ +..++..+... .......+..+||++||...+.++...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~-l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTT-LASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHH-HHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHH-HHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56899999999999998 99999999999965 33444444210 001123467899999999999998888777
No 180
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.19 E-value=9.3e-06 Score=86.78 Aligned_cols=173 Identities=14% Similarity=0.140 Sum_probs=104.6
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh----------cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 002040 471 QTGLTSKIMETIRKLNYEKPMPIQAQALPVIM----------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (976)
Q Consensus 471 ~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il----------~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~ 540 (976)
.+.|+..+... ..++..|.+++-... ....+++-..||.||.-+..-.|+.++... .
T Consensus 25 ~~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-------r 91 (303)
T PF13872_consen 25 RLHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-------R 91 (303)
T ss_pred ccCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------C
Confidence 34667665542 346788988886654 234577778999999987666666665542 2
Q ss_pred CeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCccccc-----
Q 002040 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNL----- 615 (976)
Q Consensus 541 ~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l----- 615 (976)
.++|++..+-.|.......+..+... .+.+..+..-. .. ........||++|+..|+..-.........|
T Consensus 92 ~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~-~~---~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~ 166 (303)
T PF13872_consen 92 KRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFK-YG---DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVD 166 (303)
T ss_pred CceEEEECChhhhhHHHHHHHHhCCC-cccceechhhc-cC---cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHH
Confidence 36899999999988887877775432 23333222100 00 0011235799999999877653221111111
Q ss_pred ----CCceEEEecCcccccccCCc--------hHHHHHHHhcCCCCcEEEEeccCcHHH
Q 002040 616 ----RRVTYLVMDEADRMFDMGFE--------PQITRIVQNIRPDRQTVLFSATFPRQV 662 (976)
Q Consensus 616 ----~~~~~vVlDEah~~~~~~f~--------~~i~~il~~~~~~~q~i~~SAT~~~~~ 662 (976)
..=.+||+||||.+.+..-. ..+..+-..+ |+.++|++|||.....
T Consensus 167 W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep 224 (303)
T PF13872_consen 167 WCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEP 224 (303)
T ss_pred HHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCC
Confidence 11248999999988665321 1222333334 6677999999975543
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.13 E-value=5.5e-06 Score=84.90 Aligned_cols=146 Identities=16% Similarity=0.247 Sum_probs=75.6
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH-------HHHH
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-------HSDI 560 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~-------~~~~ 560 (976)
...++.|..++.+++...-+++.|+.|||||+.++..++..+... .-.+++|+-|+.+....+ .+.+
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~ 76 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKM 76 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS--------
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHH
Confidence 345789999999999888889999999999999999998888752 234677777876431111 0000
Q ss_pred HHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHH
Q 002040 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (976)
Q Consensus 561 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~ 640 (976)
.-++..+--....+++.. .+..+.....|-+.++.-+. + ..|. -.+||||||+.+. ..++..
T Consensus 77 ~p~~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~iR-------G--rt~~-~~~iIvDEaQN~t----~~~~k~ 138 (205)
T PF02562_consen 77 EPYLRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFIR-------G--RTFD-NAFIIVDEAQNLT----PEELKM 138 (205)
T ss_dssp -TTTHHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGGT-------T----B--SEEEEE-SGGG------HHHHHH
T ss_pred HHHHHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhhc-------C--cccc-ceEEEEecccCCC----HHHHHH
Confidence 000000000000001111 12233334566666654331 1 2233 3899999999764 557888
Q ss_pred HHHhcCCCCcEEEEecc
Q 002040 641 IVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 641 il~~~~~~~q~i~~SAT 657 (976)
++..+..+.++|++.-+
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 88888888887776554
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.08 E-value=1.2e-05 Score=82.96 Aligned_cols=125 Identities=17% Similarity=0.241 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHhcCC--CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 490 PMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~--d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
+++-|..++..++... -++++|+.|+|||.+ +..+...+.. .+..+++++||...+..+... .
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~-------~ 66 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREK-------T 66 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHH-------H
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHh-------h
Confidence 6789999999997543 467779999999975 4445555554 257899999999887765443 2
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcC-CcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
++.+. |-..++....... .....+...++||||||-.+. ...+..++..+.
T Consensus 67 ~~~a~------------------------Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~ 118 (196)
T PF13604_consen 67 GIEAQ------------------------TIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAK 118 (196)
T ss_dssp TS-EE------------------------EHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-
T ss_pred Ccchh------------------------hHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHH
Confidence 22222 2111111100000 000114556899999999653 446677777776
Q ss_pred C-CCcEEEEecc
Q 002040 647 P-DRQTVLFSAT 657 (976)
Q Consensus 647 ~-~~q~i~~SAT 657 (976)
. ..++|++.-+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 6 5667766655
No 183
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.07 E-value=7.8e-07 Score=105.04 Aligned_cols=79 Identities=25% Similarity=0.357 Sum_probs=66.6
Q ss_pred chHHHHHHHHHHhhhcC-CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhc---cCCccEEEecCc
Q 002040 698 SDRFLRLLELLGEWYEK-GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK---SNVCNLLIATSV 773 (976)
Q Consensus 698 ~~k~~~l~~~l~~~~~~-~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~---~g~~~vLVaT~v 773 (976)
..|+..|...+...... .+||||.+.+.+.+.|..++...+ ....+.|......|+.++..|+ ...+.+|++|.+
T Consensus 614 ~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra 692 (696)
T KOG0383|consen 614 SGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRA 692 (696)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccc
Confidence 34556666666666554 499999999999999999998888 8999999999999999999998 446889999999
Q ss_pred cccc
Q 002040 774 AARG 777 (976)
Q Consensus 774 ~~~G 777 (976)
.+.|
T Consensus 693 ~g~g 696 (696)
T KOG0383|consen 693 GGLG 696 (696)
T ss_pred ccCC
Confidence 8876
No 184
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.06 E-value=0.0002 Score=86.87 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=52.3
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
..+.+.|..|+..++.. ..+||.||+|+|||.+.+ .++.++.. .|++|||++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~-~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLV-ELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHH-HHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 45789999999999876 567889999999997644 34444333 256899999999999988877765
No 185
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.01 E-value=1.9e-05 Score=79.29 Aligned_cols=105 Identities=19% Similarity=0.274 Sum_probs=72.1
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHCCC--CceeccCCCCHHHHHHHHHHhccCCccEEEecC--cccccCCCCC--CcEEE
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKHGY--PCLSLHGAKDQTDRESTISDFKSNVCNLLIATS--VAARGLDVKE--LELVI 787 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~~~--~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~--v~~~GlDi~~--v~~VI 787 (976)
++.+|||++|...++.+...|..... .+..+.. .......+++.|+.+...||+|+. .+..|||+++ +.+||
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vi 86 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVI 86 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhheee
Confidence 58999999999999999999876531 1222222 355778999999999999999998 9999999997 77899
Q ss_pred EeCCCCC----HH--------------------------HHHHHhcccCCCCCccEEEEEecC
Q 002040 788 NFDAPNH----YE--------------------------DYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 788 ~~d~p~s----~~--------------------------~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
+...|.. +. ...|.+||+-|....-.++++++.
T Consensus 87 i~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 87 IVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888752 11 114999999998765445555543
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.00 E-value=9.5e-05 Score=76.46 Aligned_cols=154 Identities=20% Similarity=0.337 Sum_probs=95.6
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc---CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS---GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~---g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
+|.....|..++=.+. .++ -.++.|.+.+..+++ |.+.+.+.-||.|||.+ ++||+..+... ....|.
T Consensus 4 ~w~p~~~P~wLl~E~e-~~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd------g~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE-SNI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD------GSRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHH-cCc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC------CCcEEE
Confidence 5666666666653322 232 478999999999885 57899999999999987 78888777653 234677
Q ss_pred EEccCHHHHHHHHHHHHHHHh-hcCcEEEE--eeCCCChH----HHH----HHHhcCCeEEEeCchhHHHHHHhcC----
Q 002040 545 IMAPTRELVQQIHSDIRKFAK-VMGVRCVP--VYGGSGVA----QQI----SELKRGTEIVVCTPGRMIDILCTSG---- 609 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~-~~~~~~~~--~~gg~~~~----~~~----~~l~~~~~Iiv~Tp~~L~~~l~~~~---- 609 (976)
++|| ..|..|.++.+...+. .++-.+.. +.-..... ..+ ........|+++||+.++.+....-
T Consensus 75 viVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 8888 5788999988876443 33433332 22222211 111 1222345799999998765432211
Q ss_pred -Ccc----------cccCCceEEEecCcccccc
Q 002040 610 -GKI----------TNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 610 -~~~----------~~l~~~~~vVlDEah~~~~ 631 (976)
+.. .-|.....=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 010 0133445578999997653
No 187
>PRK10536 hypothetical protein; Provisional
Probab=97.96 E-value=0.00012 Score=77.18 Aligned_cols=143 Identities=13% Similarity=0.119 Sum_probs=82.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH-----------
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV----------- 553 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La----------- 553 (976)
.++...+..|..++.++.++..+++.|++|+|||+.++..++..+... .-.+++|.-|+....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 445567789999999999988889999999999998777777666442 123455555664321
Q ss_pred HHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHH-h-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc
Q 002040 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL-K-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 554 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l-~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
.-+.-++.-+...+.. +.|. ..+..+ . ....|.|+... ++.. ..|. -++||||||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l~----ymRG-----rtl~-~~~vIvDEaqn~~- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPFA----YMRG-----RTFE-NAVVILDEAQNVT- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecHH----HhcC-----Cccc-CCEEEEechhcCC-
Confidence 1111112222111111 1111 111211 1 12345555433 2321 1232 3799999999753
Q ss_pred cCCchHHHHHHHhcCCCCcEEEEe
Q 002040 632 MGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
..++..++..+..+.++|++.
T Consensus 190 ---~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 ---AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred ---HHHHHHHHhhcCCCCEEEEeC
Confidence 467788888888777766654
No 188
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.81 E-value=0.00015 Score=86.71 Aligned_cols=146 Identities=21% Similarity=0.265 Sum_probs=89.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcE
Q 002040 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVR 570 (976)
Q Consensus 491 ~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~ 570 (976)
.+.|..|+..++.++-++|.|+.|+|||++ +..++..+..... ....+.+++++||--.|..+.+.+......++..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~-v~~ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTT-VARLLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHH-HHHHHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 379999999999999999999999999986 3344444432211 0113578999999988887777665533222110
Q ss_pred EEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC---cccccCCceEEEecCcccccccCCchHHHHHHHhcCC
Q 002040 571 CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 571 ~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~---~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~ 647 (976)
. .+.....+-..|-.+|+........ ...+...+++||||||-.+ + ...+..++..+++
T Consensus 224 ----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d---~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-D---LPLMAKLLKALPP 285 (586)
T ss_pred ----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-C---HHHHHHHHHhcCC
Confidence 0 0011112223444444322111000 0012335789999999843 2 4567788888998
Q ss_pred CCcEEEEecc
Q 002040 648 DRQTVLFSAT 657 (976)
Q Consensus 648 ~~q~i~~SAT 657 (976)
..++|++.=.
T Consensus 286 ~~rlIlvGD~ 295 (586)
T TIGR01447 286 NTKLILLGDK 295 (586)
T ss_pred CCEEEEECCh
Confidence 9998887655
No 189
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.75 E-value=0.00015 Score=86.96 Aligned_cols=146 Identities=21% Similarity=0.252 Sum_probs=89.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCc
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~ 569 (976)
..+.|..|+...+.++-+||.|++|+|||++ +..++..+.... ......+++++||-..|..+.+.+......+++
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~-v~~ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~ 228 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTT-VAKLLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPL 228 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHH-HHHHHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhcccc
Confidence 3589999999999999999999999999986 333343333211 112356889999999998887776654333221
Q ss_pred EEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcC---CcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~---~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
.- .+......-..|-.+|+....... ....+.-.+++||||||-.+ + ...+..++..++
T Consensus 229 ~~--------------~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d---~~lm~~ll~al~ 290 (615)
T PRK10875 229 TD--------------EQKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D---LPMMARLIDALP 290 (615)
T ss_pred ch--------------hhhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c---HHHHHHHHHhcc
Confidence 10 000001111233333322111000 00112335689999999843 2 567778889999
Q ss_pred CCCcEEEEecc
Q 002040 647 PDRQTVLFSAT 657 (976)
Q Consensus 647 ~~~q~i~~SAT 657 (976)
+..++|++.-.
T Consensus 291 ~~~rlIlvGD~ 301 (615)
T PRK10875 291 PHARVIFLGDR 301 (615)
T ss_pred cCCEEEEecch
Confidence 99998888765
No 190
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.67 E-value=0.00014 Score=82.47 Aligned_cols=108 Identities=16% Similarity=0.242 Sum_probs=66.0
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 585 (976)
-+||.|..|||||++++ .++..+.. ...+..++++|+...|...+...+.... ..
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~~--------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKY----------NP--------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhc----------cc---------
Confidence 36888999999998744 34444311 1246678999999999887777776532 00
Q ss_pred HHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-------CchHHHHHHHh
Q 002040 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-------FEPQITRIVQN 644 (976)
Q Consensus 586 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-------f~~~i~~il~~ 644 (976)
......+..+..++..+. ........+++|||||||+|...+ ...++..++..
T Consensus 58 ---~~~~~~~~~~~~~i~~~~---~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 ---KLKKSDFRKPTSFINNYS---ESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred ---chhhhhhhhhHHHHhhcc---cccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 001223344444443332 011345678999999999987631 23556666555
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.63 E-value=0.00015 Score=83.03 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=51.5
Q ss_pred CCCcHHHHHHHHHHhcCCC-EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d-~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
..+.+-|..|+...++.++ .++.||+|+|||.+....+.+.+.. +.+|||++||...+..+.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHh
Confidence 3567889999999998865 5677999999998866655555543 568999999999988887753
No 192
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.63 E-value=0.0004 Score=85.59 Aligned_cols=131 Identities=17% Similarity=0.166 Sum_probs=80.4
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
..+++.|..|+..+..++-+++.|+.|+|||++ +..++..+... +....+++++||-..|..+.+. .
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~-l~~i~~~~~~~-----~~~~~v~l~ApTg~AA~~L~e~-------~ 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI-TRAIIELAEEL-----GGLLPVGLAAPTGRAAKRLGEV-------T 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH-HHHHHHHHHHc-----CCCceEEEEeCchHHHHHHHHh-------c
Confidence 468999999999999989999999999999975 34444444332 1114678899998777644322 2
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~ 647 (976)
|.... .+... +.. .++.+... ........++||||||+.+. ...+..++..+++
T Consensus 389 g~~a~------Tih~l---L~~-------~~~~~~~~------~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~~~~ 442 (720)
T TIGR01448 389 GLTAS------TIHRL---LGY-------GPDTFRHN------HLEDPIDCDLLIVDESSMMD----TWLALSLLAALPD 442 (720)
T ss_pred CCccc------cHHHH---hhc-------cCCccchh------hhhccccCCEEEEeccccCC----HHHHHHHHHhCCC
Confidence 22111 11111 000 00000000 00122357899999999653 3456777888888
Q ss_pred CCcEEEEecc
Q 002040 648 DRQTVLFSAT 657 (976)
Q Consensus 648 ~~q~i~~SAT 657 (976)
..++|++.-+
T Consensus 443 ~~rlilvGD~ 452 (720)
T TIGR01448 443 HARLLLVGDT 452 (720)
T ss_pred CCEEEEECcc
Confidence 8888887655
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.62 E-value=0.0017 Score=73.58 Aligned_cols=171 Identities=14% Similarity=0.108 Sum_probs=90.5
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeE-EEEccC-HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVG-LIMAPT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~v-LIl~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
...++++|+||+|||++..-.+..+.... ...+..| ||-+-| |.-+. .++..++..+|+.+.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~----~~~g~~V~lit~Dt~R~aa~---eQL~~~a~~lgvpv~~~------- 239 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINS----DDKSLNIKIITIDNYRIGAK---KQIQTYGDIMGIPVKAI------- 239 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhh----ccCCCeEEEEeccCccHHHH---HHHHHHhhcCCcceEee-------
Confidence 35688899999999987544333322211 0123334 444443 44443 22556666566654322
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHHHHHHHhcCCC-CcEEEEeccCc
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPD-RQTVLFSATFP 659 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~~~-~q~i~~SAT~~ 659 (976)
.++..+...+. .+.++++||||.+.++.... ....+..++..+.+. .-++++|||..
T Consensus 240 --------------~~~~~l~~~L~-------~~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 240 --------------ESFKDLKEEIT-------QSKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK 298 (388)
T ss_pred --------------CcHHHHHHHHH-------HhCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC
Confidence 13333433332 34568999999999765211 123444555555544 45688999986
Q ss_pred HH-HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCH
Q 002040 660 RQ-VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (976)
Q Consensus 660 ~~-~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~ 724 (976)
.. +...+..|-..++. .-.+...+...+.-.++.++... +-|+..++..+
T Consensus 299 ~~~~~~~~~~~~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~yit~Gq 349 (388)
T PRK12723 299 TSDVKEIFHQFSPFSYK-------------TVIFTKLDETTCVGNLISLIYEM--RKEVSYVTDGQ 349 (388)
T ss_pred HHHHHHHHHHhcCCCCC-------------EEEEEeccCCCcchHHHHHHHHH--CCCEEEEeCCC
Confidence 43 44444444221110 11234455566667777776553 34555555544
No 194
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.56 E-value=0.00034 Score=83.17 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=52.1
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCC-------------------CCC-C-------
Q 002040 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQP-------------------PVA-A------- 537 (976)
Q Consensus 489 ~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~-------------------~~~-~------- 537 (976)
+|+|.|...+..++ ...++++-.|||+|||++.+...|.+...+. +.. .
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 47899987776655 5678999999999999987666655543221 000 0
Q ss_pred -------CCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 538 -------GDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 538 -------~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
...|++.+-.-|..-..|+..++.+..
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~ 134 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTG 134 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcC
Confidence 013666777777777788888888764
No 195
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.00038 Score=79.21 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=72.7
Q ss_pred EEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH-HHhhcCcEEEEeeCCCChHHH----
Q 002040 509 GVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK-FAKVMGVRCVPVYGGSGVAQQ---- 583 (976)
Q Consensus 509 ~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~---- 583 (976)
..+.||||||++++..||....+ |. ...|+.|..-.........|.. +...+-..-.+.+++..+.-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~k------gy-r~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK------GY-RNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh------ch-hhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 45789999999866555544332 11 2346666654444433222211 111010111122233222110
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCccc---ccCCce-EEEecCcccccccC------------CchHHHHHHHhcCC
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKIT---NLRRVT-YLVMDEADRMFDMG------------FEPQITRIVQNIRP 647 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~---~l~~~~-~vVlDEah~~~~~~------------f~~~i~~il~~~~~ 647 (976)
......+..|+++|...|...+.+...... +|.+.. +++-||||++-... .+..+..+...-++
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nk 154 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNK 154 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCC
Confidence 111223578999999999777755433222 344444 46779999873211 11111112222345
Q ss_pred CCcEEEEeccCcHH
Q 002040 648 DRQTVLFSATFPRQ 661 (976)
Q Consensus 648 ~~q~i~~SAT~~~~ 661 (976)
+.-++.||||+|..
T Consensus 155 d~~~lef~at~~k~ 168 (812)
T COG3421 155 DNLLLEFSATIPKE 168 (812)
T ss_pred CceeehhhhcCCcc
Confidence 55678899999843
No 196
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.43 E-value=0.00069 Score=81.32 Aligned_cols=145 Identities=21% Similarity=0.244 Sum_probs=89.2
Q ss_pred CCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCC-EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 002040 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d-~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~ 541 (976)
|+.........+.+.+... -+..+...|.+|+-.++.-.| .||.|=+|+|||++.. .++..|.. .|.
T Consensus 647 pP~f~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~-------~gk 714 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVA-------LGK 714 (1100)
T ss_pred CchhhcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHH-------cCC
Confidence 3333444445555665553 223466899999999887766 5777999999998633 33333332 367
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH-----------------HHHHhcCCeEEEeCchhHHHH
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ-----------------ISELKRGTEIVVCTPGRMIDI 604 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~-----------------~~~l~~~~~Iiv~Tp~~L~~~ 604 (976)
+||+.+=|...+..+.-.+.. +++.+.-+-.+..+..+ +..+...+.||.||--.+.+.
T Consensus 715 kVLLtsyThsAVDNILiKL~~----~~i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p 790 (1100)
T KOG1805|consen 715 KVLLTSYTHSAVDNILIKLKG----FGIYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP 790 (1100)
T ss_pred eEEEEehhhHHHHHHHHHHhc----cCcceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch
Confidence 889998888777655433333 34443322222222222 223334678999997666554
Q ss_pred HHhcCCcccccCCceEEEecCccccc
Q 002040 605 LCTSGGKITNLRRVTYLVMDEADRMF 630 (976)
Q Consensus 605 l~~~~~~~~~l~~~~~vVlDEah~~~ 630 (976)
| +....|+|+|||||-.|+
T Consensus 791 l-------f~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 791 L-------FVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred h-------hhccccCEEEEccccccc
Confidence 4 455679999999999775
No 197
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.42 E-value=0.0041 Score=69.43 Aligned_cols=174 Identities=19% Similarity=0.225 Sum_probs=97.3
Q ss_pred hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
..++.+.++||||.|||++.+=.+..+++. .+....+||.+-|--... +++++.++..+++.+.+++
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~-----~~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~~vv~------ 267 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVML-----KKKKKVAIITTDTYRIGA--VEQLKTYADIMGVPLEVVY------ 267 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhh-----ccCcceEEEEeccchhhH--HHHHHHHHHHhCCceEEec------
Confidence 347889999999999998744433333311 123345677776643332 3667777777777665443
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccc-ccCCchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~-~~~f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
+|.-|...+ ..|.++++|.||=|-+.. |......+..++....+.--.|++|||...
T Consensus 268 ---------------~~~el~~ai-------~~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~ 325 (407)
T COG1419 268 ---------------SPKELAEAI-------EALRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY 325 (407)
T ss_pred ---------------CHHHHHHHH-------HHhhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch
Confidence 444444444 345566777777666432 112344455555555555567889999765
Q ss_pred H-HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 661 Q-VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 661 ~-~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
. +..+...|-.-++.- .++...++...+-.++.++... .-|+..|++.+.
T Consensus 326 ~dlkei~~~f~~~~i~~-------------~I~TKlDET~s~G~~~s~~~e~--~~PV~YvT~GQ~ 376 (407)
T COG1419 326 EDLKEIIKQFSLFPIDG-------------LIFTKLDETTSLGNLFSLMYET--RLPVSYVTNGQR 376 (407)
T ss_pred HHHHHHHHHhccCCcce-------------eEEEcccccCchhHHHHHHHHh--CCCeEEEeCCCC
Confidence 4 455555554333211 1123344444555566666543 345666665554
No 198
>PF13245 AAA_19: Part of AAA domain
Probab=97.32 E-value=0.00088 Score=57.45 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=37.2
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
+.-++|.|+.|||||.+.+-.+...+.... .. +..+||++||+.++..+.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 334556999999999775555554443211 12 567999999999998887766
No 199
>PRK08181 transposase; Validated
Probab=97.32 E-value=0.0035 Score=67.72 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=60.3
Q ss_pred HHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCC
Q 002040 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (976)
Q Consensus 500 ~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 579 (976)
++-.+.+++++||+|+|||..+.. +...+... |..|++ ++...|+.++..... .
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~A-ia~~a~~~-------g~~v~f-~~~~~L~~~l~~a~~---------------~-- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAA-IGLALIEN-------GWRVLF-TRTTDLVQKLQVARR---------------E-- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHH-HHHHHHHc-------CCceee-eeHHHHHHHHHHHHh---------------C--
Confidence 556788999999999999975443 33333321 334444 344455544321100 0
Q ss_pred hHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCC-chHHHHHHHhcCCCCcEEEEeccC
Q 002040 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 580 ~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f-~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
.+...++. .+..+++|||||.+.+....+ ...+..++........+|+.|-..
T Consensus 156 ----------------~~~~~~l~----------~l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 156 ----------------LQLESAIA----------KLDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred ----------------CcHHHHHH----------HHhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 11111211 234578999999996543222 234556666554445667766666
Q ss_pred cHH
Q 002040 659 PRQ 661 (976)
Q Consensus 659 ~~~ 661 (976)
+..
T Consensus 210 ~~~ 212 (269)
T PRK08181 210 FGE 212 (269)
T ss_pred HHH
Confidence 554
No 200
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.28 E-value=0.0017 Score=81.52 Aligned_cols=123 Identities=20% Similarity=0.140 Sum_probs=76.4
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 489 KPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d-~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
.+++-|.+|+..++++.+ ++|.|..|+|||++ +-+++..+.. .|..|++++||-..|..+.. ..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~t 410 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------GS 410 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------cc
Confidence 589999999999998664 67889999999986 4444444332 36789999999766644321 12
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhc-C
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-R 646 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~-~ 646 (976)
|+.. .|...|+.-+.. ....+...++||||||-.+. ..++..++... .
T Consensus 411 Gi~a------------------------~TI~sll~~~~~---~~~~l~~~~vlIVDEASMv~----~~~m~~LL~~a~~ 459 (988)
T PRK13889 411 GIAS------------------------RTIASLEHGWGQ---GRDLLTSRDVLVIDEAGMVG----TRQLERVLSHAAD 459 (988)
T ss_pred Ccch------------------------hhHHHHHhhhcc---cccccccCcEEEEECcccCC----HHHHHHHHHhhhh
Confidence 2211 121122111111 11245667899999999543 33455666544 4
Q ss_pred CCCcEEEEecc
Q 002040 647 PDRQTVLFSAT 657 (976)
Q Consensus 647 ~~~q~i~~SAT 657 (976)
...++|++.=+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 56777777665
No 201
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0029 Score=71.21 Aligned_cols=178 Identities=19% Similarity=0.199 Sum_probs=88.6
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 582 (976)
.|..++++||||+|||+.+...+...+... +....++|.+.+-- .--.+.+..|+..+++.+..+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~-----G~~~V~lit~D~~R--~ga~EqL~~~a~~~gv~~~~~-------- 200 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF-----GASKVALLTTDSYR--IGGHEQLRIFGKILGVPVHAV-------- 200 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEeccccc--ccHHHHHHHHHHHcCCceEec--------
Confidence 456789999999999987555444433321 11122333333311 112245555665566544332
Q ss_pred HHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHHHHHHHhcCCCCcEEEEeccCcHH
Q 002040 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~~~~q~i~~SAT~~~~ 661 (976)
.+++.+...+ ..+.++++|+||.+-+..... ....+..+.....+...+|++|||....
T Consensus 201 -------------~~~~~l~~~l-------~~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 201 -------------KDGGDLQLAL-------AELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred -------------CCcccHHHHH-------HHhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 3333333333 234557889999997532111 1222222222223344578899998654
Q ss_pred H-HHHHHHHcCC---CeEEEeCCcccccCCc-eEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 662 V-EILARKVLNK---PVEIQVGGRSVVNKDI-TQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 662 ~-~~l~~~~l~~---~~~i~~~~~~~~~~~i-~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
. ...+..|... |..-. ..+ .-++...++..++-.++.++... +-++..+++.+.
T Consensus 261 ~l~evi~~f~~~~~~p~~~~--------~~~~~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 319 (374)
T PRK14722 261 TLNEVVQAYRSAAGQPKAAL--------PDLAGCILTKLDEASNLGGVLDTVIRY--KLPVHYVSTGQK 319 (374)
T ss_pred HHHHHHHHHHHhhccccccc--------CCCCEEEEeccccCCCccHHHHHHHHH--CcCeEEEecCCC
Confidence 3 4444444322 11000 001 12234455666677777776654 345665555543
No 202
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.26 E-value=0.0032 Score=78.09 Aligned_cols=124 Identities=16% Similarity=0.148 Sum_probs=74.3
Q ss_pred CCCcHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 488 EKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
..+++-|..|+..++.+ +-++|.|+.|+|||++ +-.++..+.. .|..+++++||-..|..+.. .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~-------~g~~V~~~ApTg~Aa~~L~~-------~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA-------AGYRVIGAALSGKAAEGLQA-------E 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHh-------c
Confidence 35889999999999874 5678899999999975 3334444332 26678999999766654421 1
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHh-c
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN-I 645 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~-~ 645 (976)
.|+... |-.+++..+.. ....+...++||||||-.+. ...+..++.. .
T Consensus 416 ~g~~a~------------------------Ti~~~~~~~~~---~~~~~~~~~llIvDEasMv~----~~~~~~Ll~~~~ 464 (744)
T TIGR02768 416 SGIESR------------------------TLASLEYAWAN---GRDLLSDKDVLVIDEAGMVG----SRQMARVLKEAE 464 (744)
T ss_pred cCCcee------------------------eHHHHHhhhcc---CcccCCCCcEEEEECcccCC----HHHHHHHHHHHH
Confidence 232211 11111111111 11235678999999999543 2234445542 2
Q ss_pred CCCCcEEEEecc
Q 002040 646 RPDRQTVLFSAT 657 (976)
Q Consensus 646 ~~~~q~i~~SAT 657 (976)
....++|++.=+
T Consensus 465 ~~~~kliLVGD~ 476 (744)
T TIGR02768 465 EAGAKVVLVGDP 476 (744)
T ss_pred hcCCEEEEECCh
Confidence 356667766633
No 203
>PRK06526 transposase; Provisional
Probab=97.24 E-value=0.0021 Score=69.02 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=22.2
Q ss_pred HHHHhcCCCEEEEcCCCCchHHHHHHHHH
Q 002040 498 LPVIMSGRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 498 i~~il~g~d~i~~a~TGsGKT~~~~l~il 526 (976)
..++..+.+++++||+|+|||..+...+.
T Consensus 92 ~~fi~~~~nlll~Gp~GtGKThLa~al~~ 120 (254)
T PRK06526 92 LDFVTGKENVVFLGPPGTGKTHLAIGLGI 120 (254)
T ss_pred CchhhcCceEEEEeCCCCchHHHHHHHHH
Confidence 35566788999999999999987554333
No 204
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.20 E-value=0.014 Score=67.62 Aligned_cols=170 Identities=21% Similarity=0.212 Sum_probs=86.1
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHH-hcCCCCCCCCCCeEE-EEccC-HHHHHHHHHHHHHHHhhcCcEEEEeeCCCC
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHI-KDQPPVAAGDGPVGL-IMAPT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l-~~~~~~~~~~~~~vL-Il~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 579 (976)
.++.++++||||+|||++.+..+.... .. .+.+|+ |-+-+ +.-+ ...+..++..+++.+..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~------ 283 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVEV------ 283 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceEc------
Confidence 356788899999999987554443332 22 133344 44433 3222 24455555445543322
Q ss_pred hHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-cCCchHHHHHHH-hcCCCCcEEEEecc
Q 002040 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQ-NIRPDRQTVLFSAT 657 (976)
Q Consensus 580 ~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~-~~~~~~q~i~~SAT 657 (976)
+.++..|...+. .+..+++||||-+-+... ......+..++. ...+...++++|||
T Consensus 284 ---------------~~~~~~l~~~l~-------~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~ 341 (424)
T PRK05703 284 ---------------VYDPKELAKALE-------QLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT 341 (424)
T ss_pred ---------------cCCHHhHHHHHH-------HhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC
Confidence 233444444442 234578999998865321 112234445555 22344557889999
Q ss_pred CcHH-HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 658 FPRQ-VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 658 ~~~~-~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
.... +..++..|-..++. .-++...+....+..++.++... +-++..++..+.
T Consensus 342 ~~~~~l~~~~~~f~~~~~~-------------~vI~TKlDet~~~G~i~~~~~~~--~lPv~yit~Gq~ 395 (424)
T PRK05703 342 TKYEDLKDIYKHFSRLPLD-------------GLIFTKLDETSSLGSILSLLIES--GLPISYLTNGQR 395 (424)
T ss_pred CCHHHHHHHHHHhCCCCCC-------------EEEEecccccccccHHHHHHHHH--CCCEEEEeCCCC
Confidence 8753 44444444221110 11123334444555566666543 346666665554
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=97.20 E-value=0.0043 Score=69.08 Aligned_cols=132 Identities=23% Similarity=0.273 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc-C-H-HHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP-T-R-ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P-t-r-~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
.-++++|++|+|||++..-.+ ..+.. .+..++++.. | | ....|+ ..++..+|+.+.....|....
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA-~~l~~-------~g~~V~li~~Dt~R~~a~eqL----~~~a~~lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLA-YYLKK-------NGFSVVIAAGDTFRAGAIEQL----EEHAERLGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHH-HHHHH-------cCCeEEEecCCcCcHHHHHHH----HHHHHHcCCceecccCCCCHH
Confidence 357788999999998643333 33332 2344555543 2 2 333343 444555666554332222111
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccc-ccCCchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~-~~~f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
.. +.+.+.. .....+++||||.|.++. +..+...+..+...+.|+.-+++++||...
T Consensus 209 ~v-----------------~~~ai~~-----~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 209 AV-----------------AYDAIEH-----AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred HH-----------------HHHHHHH-----HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 10 1122211 112346899999999875 234556677777777888888999999876
Q ss_pred HHHHHHHHHc
Q 002040 661 QVEILARKVL 670 (976)
Q Consensus 661 ~~~~l~~~~l 670 (976)
.....+..|.
T Consensus 267 d~~~~a~~f~ 276 (336)
T PRK14974 267 DAVEQAREFN 276 (336)
T ss_pred hHHHHHHHHH
Confidence 6555555543
No 206
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.011 Score=66.15 Aligned_cols=169 Identities=17% Similarity=0.220 Sum_probs=88.2
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE-Ec-cCH-HHHHHHHHHHHHHHhhcCcEEEEeeCCCCh
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI-MA-PTR-ELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI-l~-Ptr-~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 580 (976)
.+.++++|+||+|||+.....+. .+.. .+..+++ -+ |.| ..+.| +..++...++.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~-~L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~-------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW-QFHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVI-------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH-HHHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEE--------
Confidence 35688999999999987544443 3322 2344444 44 333 23333 3344443443332
Q ss_pred HHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc-CCchHHHHHHHhcCCCCcEEEEeccCc
Q 002040 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 581 ~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
++.+|..|.+.+... ....++++||||-+=+.... .....+..++....+..-++++|||..
T Consensus 301 -------------v~~d~~~L~~aL~~l----k~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk 363 (436)
T PRK11889 301 -------------AVRDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK 363 (436)
T ss_pred -------------ecCCHHHHHHHHHHH----HhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC
Confidence 233566665555321 11124789999988764422 123334455555556655677999865
Q ss_pred H-HHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCH
Q 002040 660 R-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (976)
Q Consensus 660 ~-~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~ 724 (976)
. .+...+..|-..++. .-++...+...+.-.++.++... +-|+..++..+
T Consensus 364 ~~d~~~i~~~F~~~~id-------------glI~TKLDET~k~G~iLni~~~~--~lPIsyit~GQ 414 (436)
T PRK11889 364 SKDMIEIITNFKDIHID-------------GIVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 414 (436)
T ss_pred hHHHHHHHHHhcCCCCC-------------EEEEEcccCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 4 445555555321110 01233445555666666666553 34555555543
No 207
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.15 E-value=0.024 Score=70.68 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
.++|-|.+|+.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+-|+..|..+.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 478999998864 3468999999999999986555554443221 1234689999999999999888887653
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.14 E-value=0.00096 Score=63.87 Aligned_cols=21 Identities=29% Similarity=0.151 Sum_probs=13.7
Q ss_pred CCCEEEEcCCCCchHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~ 524 (976)
++.+++.|++|+|||.+....
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHH
Confidence 456889999999999874433
No 209
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.0037 Score=64.45 Aligned_cols=172 Identities=19% Similarity=0.168 Sum_probs=92.8
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc-c-CHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~-P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 583 (976)
-++++||||+|||++..-.+...... +.++.+++ - .|.-| .++++.++..+++.+....-.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~--------~~~v~lis~D~~R~ga---~eQL~~~a~~l~vp~~~~~~~~~~~~~ 71 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK--------GKKVALISADTYRIGA---VEQLKTYAEILGVPFYVARTESDPAEI 71 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEEEESTSSTHH---HHHHHHHHHHHTEEEEESSTTSCHHHH
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc--------cccceeecCCCCCccH---HHHHHHHHHHhccccchhhcchhhHHH
Confidence 36789999999998744433333222 23344444 3 34333 366777777788777654433322111
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHHH
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~ 662 (976)
+...+.. ....++++|+||=+-+... ......+..++..+.+..-++++|||.....
T Consensus 72 -----------------~~~~l~~-----~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 72 -----------------AREALEK-----FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp -----------------HHHHHHH-----HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred -----------------HHHHHHH-----HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 1112211 1223477888888865431 2234556677777777777899999987664
Q ss_pred HHHHHHHcCC-CeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 663 EILARKVLNK-PVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 663 ~~l~~~~l~~-~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
...+..++.. ++. .-.+...++..++-.++.++... +-|+-.+++.+.
T Consensus 130 ~~~~~~~~~~~~~~-------------~lIlTKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq~ 178 (196)
T PF00448_consen 130 LEQALAFYEAFGID-------------GLILTKLDETARLGALLSLAYES--GLPISYITTGQR 178 (196)
T ss_dssp HHHHHHHHHHSSTC-------------EEEEESTTSSSTTHHHHHHHHHH--TSEEEEEESSSS
T ss_pred HHHHHHHhhcccCc-------------eEEEEeecCCCCcccceeHHHHh--CCCeEEEECCCC
Confidence 4333333211 100 01134455566677777777654 345555555543
No 210
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.09 E-value=0.0029 Score=70.40 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=77.4
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCc
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~ 569 (976)
+++-|.++|.. ....++|.|..|||||.+.+.-++..+.... .....+|+|++|+.+|..+...+...+.....
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 46889998888 6778999999999999987666666665432 23457999999999999999998886654321
Q ss_pred EEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
. .............-..+.|+|...+...+.........+ .-.+-|+|+..
T Consensus 75 ~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~-~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 E------SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGI-DPNFEILDEEE 125 (315)
T ss_dssp C------CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTS-HTTTEEECHHH
T ss_pred c------ccccccccccccccchheeehhhhhhhhhhhhhhhhhhc-cccceeecchh
Confidence 0 000011112223345788999888766544321111111 12356667766
No 211
>PRK04296 thymidine kinase; Provisional
Probab=97.08 E-value=0.0013 Score=67.68 Aligned_cols=109 Identities=15% Similarity=0.173 Sum_probs=58.3
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC---HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT---RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt---r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
.-.++.|++|+|||+.++-.+..... .+.+|+|+.|. +.... .++..+|+.+..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~--------~g~~v~i~k~~~d~~~~~~-------~i~~~lg~~~~~-------- 59 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE--------RGMKVLVFKPAIDDRYGEG-------KVVSRIGLSREA-------- 59 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH--------cCCeEEEEeccccccccCC-------cEecCCCCcccc--------
Confidence 34688999999999875555444422 25677888663 21111 111112211110
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
+.+..+..+...+.. .-..+.+|||||||.+. ..++..++..+.+....+++++-
T Consensus 60 -----------~~~~~~~~~~~~~~~------~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 60 -----------IPVSSDTDIFELIEE------EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -----------eEeCChHHHHHHHHh------hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 122344444444432 12357899999998532 23466666665555455555554
No 212
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.02 E-value=0.0034 Score=68.17 Aligned_cols=144 Identities=16% Similarity=0.147 Sum_probs=84.0
Q ss_pred HcCCCCCcHHHHHHHHHHhcCC--CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH-----
Q 002040 484 KLNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI----- 556 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~--d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~----- 556 (976)
-+|+......|.-|+..++... =|.+.|+-|||||+.++.+.+..++..+. ..+++|.=|+..+-..+
T Consensus 223 vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG~dIGfLPG 297 (436)
T COG1875 223 VWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVGEDIGFLPG 297 (436)
T ss_pred hhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcccccCcCCC
Confidence 4677777788999999988654 36778999999999999998888876532 33566666775543211
Q ss_pred ------HHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccC-------CceEEEe
Q 002040 557 ------HSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLR-------RVTYLVM 623 (976)
Q Consensus 557 ------~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~-------~~~~vVl 623 (976)
.-|++.++.. +..+.. .-=|+.+.|..++......+..|. .=.||||
T Consensus 298 ~eEeKm~PWmq~i~Dn-----------------LE~L~~---~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiII 357 (436)
T COG1875 298 TEEEKMGPWMQAIFDN-----------------LEVLFS---PNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIII 357 (436)
T ss_pred chhhhccchHHHHHhH-----------------HHHHhc---ccccchHHHHHHHhccceeeeeeeeecccccccceEEE
Confidence 1111111111 111111 011122233222222211111111 1258999
Q ss_pred cCcccccccCCchHHHHHHHhcCCCCcEEEEec
Q 002040 624 DEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 624 DEah~~~~~~f~~~i~~il~~~~~~~q~i~~SA 656 (976)
|||+.+. ..++..|+..+....++|++.-
T Consensus 358 DEaQNLT----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 358 DEAQNLT----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred ehhhccC----HHHHHHHHHhccCCCEEEEcCC
Confidence 9999864 4578889999888887776543
No 213
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.98 E-value=0.04 Score=68.88 Aligned_cols=71 Identities=18% Similarity=0.161 Sum_probs=53.4
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
.++|-|.+|+.. ....++|.|..|||||.+.+.-+...+.... -....+|+|+-|+..|..+...+..++.
T Consensus 4 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~----i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN----VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC----CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 578999999875 3568999999999999986665555554321 1123689999999999998888877653
No 214
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.95 E-value=0.002 Score=68.97 Aligned_cols=81 Identities=15% Similarity=0.347 Sum_probs=62.5
Q ss_pred HHHHHhccCCccEEEecCcccccCCCCC--------CcEEEEeCCCCCHHHHHHHhcccCCCCCc-cEEEEEecCC---C
Q 002040 755 STISDFKSNVCNLLIATSVAARGLDVKE--------LELVINFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISEE---D 822 (976)
Q Consensus 755 ~~~~~F~~g~~~vLVaT~v~~~GlDi~~--------v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~-g~~~~~~~~~---d 822 (976)
...+.|++|...|+|.|.++++||.+.. -.+.|.+.+||+....+|..||++|.||. .-.|.++... +
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~gE 131 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPGE 131 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHHH
Confidence 5577999999999999999999998864 34677799999999999999999999984 4455555433 4
Q ss_pred cCchHHHHHHHhh
Q 002040 823 AKYSPDLVKALEL 835 (976)
Q Consensus 823 ~~~~~~i~~~l~~ 835 (976)
..++..+.+.|..
T Consensus 132 ~Rfas~va~rL~s 144 (278)
T PF13871_consen 132 RRFASTVARRLES 144 (278)
T ss_pred HHHHHHHHHHHhh
Confidence 4555555555543
No 215
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.94 E-value=0.0015 Score=80.67 Aligned_cols=158 Identities=16% Similarity=0.154 Sum_probs=93.4
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCC----------CCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEE
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP----------VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~----------~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~ 572 (976)
.|+.++++..+|+|||..-+...+.++-..-+ .......-+|||||. ++..||+.+|.+.+... +.+.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 45678888999999998866555544221100 011123567999997 56699999999987654 5665
Q ss_pred EeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcC--Ccccc-------------cCCce--EEEecCcccccccCCc
Q 002040 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG--GKITN-------------LRRVT--YLVMDEADRMFDMGFE 635 (976)
Q Consensus 573 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~--~~~~~-------------l~~~~--~vVlDEah~~~~~~f~ 635 (976)
...|-...........-.+|||++|+..|...+.... +...+ |-.+. -||||||+.+-. ..
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ss 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SS 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hH
Confidence 5555332211111222358999999999987665431 11111 11112 289999995432 23
Q ss_pred hHHHHHHHhcCCCCcEEEEeccCcHHHHHH
Q 002040 636 PQITRIVQNIRPDRQTVLFSATFPRQVEIL 665 (976)
Q Consensus 636 ~~i~~il~~~~~~~q~i~~SAT~~~~~~~l 665 (976)
......+..+ +....-++|+||-..+..+
T Consensus 529 S~~a~M~~rL-~~in~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 529 SAAAEMVRRL-HAINRWCVTGTPIQKIDDL 557 (1394)
T ss_pred HHHHHHHHHh-hhhceeeecCCchhhhhhh
Confidence 3444444444 2334678999976554433
No 216
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.91 E-value=0.0097 Score=75.37 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=77.5
Q ss_pred CCCcHHHHHHHHHHhc-CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 488 EKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~-g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
..+++-|.+++..+.. ++-++|+|..|+|||++ +-++...+.. .|..|+.++||-..|..+.+ .
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e-------~ 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA-------AGYRVVGGALAGKAAEGLEK-------E 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEEcCcHHHHHHHHH-------h
Confidence 3589999999998865 45678889999999976 4444444433 36788999999776654422 2
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
.|+.... ...|+-.+ .. ....|...++||||||-.+. ..++..++....
T Consensus 445 ~Gi~a~T------------------------Ias~ll~~--~~-~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~ 493 (1102)
T PRK13826 445 AGIQSRT------------------------LSSWELRW--NQ-GRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVT 493 (1102)
T ss_pred hCCCeee------------------------HHHHHhhh--cc-CccCCCCCcEEEEECcccCC----HHHHHHHHHHHH
Confidence 3333221 11111000 00 11245667899999999543 345556666664
Q ss_pred -CCCcEEEEecc
Q 002040 647 -PDRQTVLFSAT 657 (976)
Q Consensus 647 -~~~q~i~~SAT 657 (976)
...++|++.=+
T Consensus 494 ~~garvVLVGD~ 505 (1102)
T PRK13826 494 RAGAKLVLVGDP 505 (1102)
T ss_pred hcCCEEEEECCH
Confidence 56778877665
No 217
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.91 E-value=0.058 Score=66.92 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
++|-|.+++.. ...+++|.|..|||||.+.+.-+...+.... .....+|+|+.|+..|.++...+...+.
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67889998764 4568999999999999986665655554321 1234689999999999999888877653
No 218
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.85 E-value=0.0032 Score=71.69 Aligned_cols=59 Identities=19% Similarity=0.284 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHH------hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH
Q 002040 490 PMPIQAQALPVI------MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (976)
Q Consensus 490 p~~~Q~~~i~~i------l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 556 (976)
+++-|..++..+ ..+..+++.|+-|+|||+. +-.+...+.. .+..+++++||-..|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l-~~~i~~~~~~-------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFL-IKAIIDYLRS-------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHH-HHHHHHHhcc-------ccceEEEecchHHHHHhc
Confidence 567899998888 5778899999999999974 2233333322 356799999998776544
No 219
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.85 E-value=0.042 Score=74.85 Aligned_cols=210 Identities=11% Similarity=0.101 Sum_probs=115.0
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
.+++-|.+++..++.. +-+||.|..|+|||.+ +-.++..+.. .|..|++++||-..+..+.+.+..
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~-------~G~~V~~lAPTgrAA~~L~e~~g~---- 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE-------QGYEIQIITAGSLSAQELRQKIPR---- 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeCCHHHHHHHHHHhcc----
Confidence 5789999999999875 5678889999999975 4444444333 367899999998777665443221
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhc-
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI- 645 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~- 645 (976)
... .+...+..+.. .....|...|+ . ....|...++||||||-.+. ...+..++...
T Consensus 497 ---~A~------Ti~~~l~~l~~--~~~~~tv~~fl----~---~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~ 554 (1960)
T TIGR02760 497 ---LAS------TFITWVKNLFN--DDQDHTVQGLL----D---KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAE 554 (1960)
T ss_pred ---hhh------hHHHHHHhhcc--cccchhHHHhh----c---ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHh
Confidence 110 01111111111 11122322332 1 11345567899999999543 44566677655
Q ss_pred CCCCcEEEEecc--CcH----HHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEE
Q 002040 646 RPDRQTVLFSAT--FPR----QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKIL 718 (976)
Q Consensus 646 ~~~~q~i~~SAT--~~~----~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvL 718 (976)
..+.++|++.=+ +|+ .+..++... +-+.. .+.........+ .+.......++..+...+..... ...++
T Consensus 555 ~~garvVlvGD~~QL~sV~aG~~f~~L~~~-gv~t~-~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tl 630 (1960)
T TIGR02760 555 QHNSKLILLNDSAQRQGMSAGSAIDLLKEG-GVTTY-AWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQ 630 (1960)
T ss_pred hcCCEEEEEcChhhcCccccchHHHHHHHC-CCcEE-EeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceE
Confidence 467888888766 222 222233222 11211 111111111111 12222333444455555444443 33689
Q ss_pred EEecCHHHHHHHHHHHHH
Q 002040 719 IFVHSQEKCDALFRDLLK 736 (976)
Q Consensus 719 IF~~s~~~~~~l~~~L~~ 736 (976)
||..+..+...|...++.
T Consensus 631 iv~~t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 631 VLATTHREQQDLTQIIRN 648 (1960)
T ss_pred EEcCCcHHHHHHHHHHHH
Confidence 999998888887776643
No 220
>PRK08116 hypothetical protein; Validated
Probab=96.79 E-value=0.023 Score=61.66 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=28.8
Q ss_pred cCCceEEEecCccc--ccccCCchHHHHHHHhc-CCCCcEEEEeccCcHHHH
Q 002040 615 LRRVTYLVMDEADR--MFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVE 663 (976)
Q Consensus 615 l~~~~~vVlDEah~--~~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~~~ 663 (976)
+..+++||||+++. ..++ ....+..|+... .....+|+.|...|..+.
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 34578999999963 2222 233455566554 344567777776665543
No 221
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.78 E-value=0.018 Score=64.09 Aligned_cols=48 Identities=8% Similarity=0.176 Sum_probs=28.5
Q ss_pred cCCceEEEecCcccccccCC-chHHHHHHHhcCC-CCcEEEEeccCcHHH
Q 002040 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f-~~~i~~il~~~~~-~~q~i~~SAT~~~~~ 662 (976)
+..+++||||+.+......| ...+..|+..... ...+|+.|...|..+
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 44578999999986543333 2345556555432 455666666555554
No 222
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.76 E-value=0.0098 Score=57.71 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=54.1
Q ss_pred eeccCCCCHHHHHHHHHHhccCC-ccEEEecCcccccCCCCC--CcEEEEeCCCCC----H-------------------
Q 002040 742 LSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKE--LELVINFDAPNH----Y------------------- 795 (976)
Q Consensus 742 ~~lhg~~~~~~R~~~~~~F~~g~-~~vLVaT~v~~~GlDi~~--v~~VI~~d~p~s----~------------------- 795 (976)
.++.-+.+..+...+++.|.... ..||++|..++.|||+++ +.+||+...|.. +
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 33444455556788899998654 379999988999999998 578888776641 1
Q ss_pred --------HHHHHHhcccCCCCCccEEEEEec
Q 002040 796 --------EDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 796 --------~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
....|.+||+-|....-.++++++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 112488899999865544444544
No 223
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.056 Score=63.01 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=81.8
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE-cc-CHHHHHHHHHHHHHHHhhcCcEEEEeeCCCCh
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM-AP-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGV 580 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl-~P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~ 580 (976)
.|..++++|+||+|||+.+...+....... .+..+.++ +. .+..+. ..+..+...+++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~------~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH------APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 466788899999999987544333332221 12233333 33 233222 2233333333432221
Q ss_pred HHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc-CCchHHHHHHHhcCCCCcEEEEeccCc
Q 002040 581 AQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 581 ~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
+.++..|...+. .+.++++||||.+-++... .....+..+ ........+|+++++..
T Consensus 413 --------------a~d~~~L~~aL~-------~l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss 470 (559)
T PRK12727 413 --------------ADSAESLLDLLE-------RLRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAH 470 (559)
T ss_pred --------------cCcHHHHHHHHH-------HhccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCC
Confidence 123334444442 2446789999999754211 111122222 22234456788888875
Q ss_pred H-HHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 660 R-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 660 ~-~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
. .+..++..|....+ ..-++...+...++-.++.++... +-++..+++++.
T Consensus 471 ~~Dl~eii~~f~~~~~-------------~gvILTKlDEt~~lG~aLsv~~~~--~LPI~yvt~GQ~ 522 (559)
T PRK12727 471 FSDLDEVVRRFAHAKP-------------QGVVLTKLDETGRFGSALSVVVDH--QMPITWVTDGQR 522 (559)
T ss_pred hhHHHHHHHHHHhhCC-------------eEEEEecCcCccchhHHHHHHHHh--CCCEEEEeCCCC
Confidence 3 44444444422110 011233344556666677766653 335555555443
No 224
>PRK06921 hypothetical protein; Provisional
Probab=96.72 E-value=0.02 Score=62.03 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=19.5
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
.+..++++|++|+|||..+ .++...+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHh
Confidence 3577999999999999753 34444444
No 225
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.67 E-value=0.012 Score=56.70 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=18.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
+..+++.|++|+|||.. +..++..+
T Consensus 19 ~~~v~i~G~~G~GKT~l-~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL-ARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHh
Confidence 67899999999999964 44444443
No 226
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.049 Score=60.94 Aligned_cols=24 Identities=29% Similarity=0.206 Sum_probs=18.2
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il 526 (976)
.++.++++||+|+|||+.+.-.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456788999999999987554443
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.56 E-value=0.022 Score=60.71 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=29.1
Q ss_pred cCCceEEEecCcccccccCCch-HHHHHHHhcC-CCCcEEEEeccCcHHH
Q 002040 615 LRRVTYLVMDEADRMFDMGFEP-QITRIVQNIR-PDRQTVLFSATFPRQV 662 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~-~i~~il~~~~-~~~q~i~~SAT~~~~~ 662 (976)
+..+++||||+++......+.. .+..|+.... ....+|+.|--.+..+
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l 209 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEM 209 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHH
Confidence 3458899999999765444443 3444555432 3456777776655443
No 228
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.44 E-value=0.015 Score=56.56 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=57.6
Q ss_pred HHHHHHHHHHCCC---CceeccCCCCHHHHHHHHHHhccCCc---cEEEecCc--ccccCCCCC--CcEEEEeCCCCC--
Q 002040 727 CDALFRDLLKHGY---PCLSLHGAKDQTDRESTISDFKSNVC---NLLIATSV--AARGLDVKE--LELVINFDAPNH-- 794 (976)
Q Consensus 727 ~~~l~~~L~~~~~---~~~~lhg~~~~~~R~~~~~~F~~g~~---~vLVaT~v--~~~GlDi~~--v~~VI~~d~p~s-- 794 (976)
.+.++..+...++ ...++.-+....+...++..|+...- .||+++.- ++.|||+++ +.+||+...|..
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12223323333344678888886433 68888876 999999998 678988777641
Q ss_pred --H---------------------------HHHHHHhcccCCCCCccEEEEEec
Q 002040 795 --Y---------------------------EDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 795 --~---------------------------~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
+ ....|.+||+-|....-.+++|+.
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 112489999999875544555554
No 229
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.44 E-value=0.0061 Score=64.56 Aligned_cols=86 Identities=20% Similarity=0.345 Sum_probs=64.5
Q ss_pred CCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCC-ChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 538 GDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGS-GVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 538 ~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
...|.+||||..---|..+...+..|.. -+..|+-++.-. ...+++..|.. .+.|.||||++|..++.... ..+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~---L~l 199 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGA---LSL 199 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCC---CCc
Confidence 3478999999986667766666666521 124555556555 67888888875 57999999999999997653 578
Q ss_pred CCceEEEecCcc
Q 002040 616 RRVTYLVMDEAD 627 (976)
Q Consensus 616 ~~~~~vVlDEah 627 (976)
+++.+||||=-|
T Consensus 200 ~~l~~ivlD~s~ 211 (252)
T PF14617_consen 200 SNLKRIVLDWSY 211 (252)
T ss_pred ccCeEEEEcCCc
Confidence 899999999876
No 230
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.027 Score=68.63 Aligned_cols=23 Identities=30% Similarity=0.156 Sum_probs=17.4
Q ss_pred CCCEEEEcCCCCchHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il 526 (976)
+.-++++||||+|||+++...+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHh
Confidence 45678899999999987554443
No 231
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.37 E-value=0.0089 Score=70.73 Aligned_cols=151 Identities=17% Similarity=0.137 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhc-----C----CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 492 PIQAQALPVIMS-----G----RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 492 ~~Q~~~i~~il~-----g----~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
|+|.-++-.|+. | +.+++.-+=|.|||......++.++.-. ...++.++++++++.-|..+++.+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 578877777762 2 2477788999999987666555555432 22478899999999999999999988
Q ss_pred HHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHH
Q 002040 563 FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIV 642 (976)
Q Consensus 563 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il 642 (976)
+....+...... .. .+... ....|.+...+.++..+...... ..=.+..++|+||+|.+-+......+..-.
T Consensus 77 ~i~~~~~l~~~~-~~-----~~~~~-~~~~i~~~~~~s~~~~~s~~~~~-~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 77 MIEASPELRKRK-KP-----KIIKS-NKKEIEFPKTGSFFKALSSDADS-LDGLNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred HHHhChhhccch-hh-----hhhhh-hceEEEEcCCCcEEEEEecCCCC-ccCCCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 876532211100 00 00001 01233333333333333332222 222357899999999875433223333222
Q ss_pred HhcCCCCcEEEEe
Q 002040 643 QNIRPDRQTVLFS 655 (976)
Q Consensus 643 ~~~~~~~q~i~~S 655 (976)
.. +++.+++++|
T Consensus 149 ~~-r~~pl~~~IS 160 (477)
T PF03354_consen 149 GA-RPNPLIIIIS 160 (477)
T ss_pred cc-CCCceEEEEe
Confidence 22 4566666554
No 232
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.36 E-value=0.15 Score=55.17 Aligned_cols=170 Identities=16% Similarity=0.209 Sum_probs=89.0
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE-ccCH--HHHHHHHHHHHHHHhhcCcEEEEeeCCCC
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM-APTR--ELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl-~Ptr--~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 579 (976)
.+..++++|++|+|||+.+.+.+... .. .+..+.++ +.+. ..+.||. .++..+++.+...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~-------~~~~v~~i~~D~~ri~~~~ql~----~~~~~~~~~~~~~----- 136 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG-------KKKTVGFITTDHSRIGTVQQLQ----DYVKTIGFEVIAV----- 136 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH-------cCCeEEEEecCCCCHHHHHHHH----HHhhhcCceEEec-----
Confidence 34678889999999998765444332 21 13334444 4232 3444443 3433344333221
Q ss_pred hHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 580 VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 580 ~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
.++..|...+..- .....+++||||-+=++.. ......+..++....++.-++++|||.
T Consensus 137 ----------------~~~~~l~~~l~~l----~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~ 196 (270)
T PRK06731 137 ----------------RDEAAMTRALTYF----KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred ----------------CCHHHHHHHHHHH----HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence 2444444443211 1223578999999876532 122334455555566665577899987
Q ss_pred cH-HHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCH
Q 002040 659 PR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (976)
Q Consensus 659 ~~-~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~ 724 (976)
.. .+...+..|-.-++. .-.+...+...+.-.++.++... +-|+..++..+
T Consensus 197 ~~~d~~~~~~~f~~~~~~-------------~~I~TKlDet~~~G~~l~~~~~~--~~Pi~~it~Gq 248 (270)
T PRK06731 197 KSKDMIEIITNFKDIHID-------------GIVFTKFDETASSGELLKIPAVS--SAPIVLMTDGQ 248 (270)
T ss_pred CHHHHHHHHHHhCCCCCC-------------EEEEEeecCCCCccHHHHHHHHH--CcCEEEEeCCC
Confidence 54 555666665321110 11233445555666666666553 34555555543
No 233
>PHA02533 17 large terminase protein; Provisional
Probab=96.28 E-value=0.027 Score=66.96 Aligned_cols=148 Identities=14% Similarity=0.073 Sum_probs=85.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
.|.|+|...+..+..++-.++..+=..|||.+.+..++..+... .+..+++++|+..-|..+++.++.+...++
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 47799999998876666667778888999998765555444422 256899999999999998888876655432
Q ss_pred c--EEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 569 V--RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 569 ~--~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
. ....... + .....+..|+.|.+.|.. . ....-.++.++||||+|.+.+ +...+..+...+.
T Consensus 133 ~l~~~~i~~~-~---~~~I~l~NGS~I~~lss~---------~-~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~la 196 (534)
T PHA02533 133 DFLQPGIVEW-N---KGSIELENGSKIGAYASS---------P-DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVIS 196 (534)
T ss_pred HHhhcceeec-C---ccEEEeCCCCEEEEEeCC---------C-CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHH
Confidence 1 1100000 0 001122345555544422 1 001122456899999996533 2233333443333
Q ss_pred C--CCcEEEEeccC
Q 002040 647 P--DRQTVLFSATF 658 (976)
Q Consensus 647 ~--~~q~i~~SAT~ 658 (976)
. ..+++++|.+.
T Consensus 197 sg~~~r~iiiSTp~ 210 (534)
T PHA02533 197 SGRSSKIIITSTPN 210 (534)
T ss_pred cCCCceEEEEECCC
Confidence 2 23455555553
No 234
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.26 E-value=0.015 Score=67.14 Aligned_cols=145 Identities=14% Similarity=0.258 Sum_probs=85.2
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH-HHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE-LVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~-La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 584 (976)
-.++.|..|||||.++++-++..+...+ .+..+||+.|+.. |..-++..+......+|+....-....+. .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 3678899999999998888887777641 2467888889886 77777888887777777543222221110 01
Q ss_pred HHHhc-CCeEEEeCc-hhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC--CCcEEEEeccCcH
Q 002040 585 SELKR-GTEIVVCTP-GRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP--DRQTVLFSATFPR 660 (976)
Q Consensus 585 ~~l~~-~~~Iiv~Tp-~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~--~~q~i~~SAT~~~ 660 (976)
.+.. |..|++..- .... .+.....+.++++|||..+... .+..++..++. ....|++|.||+.
T Consensus 76 -~~~~~g~~i~f~g~~d~~~--------~ik~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPN--------KLKSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred -EecCCCeEEEeecccCChh--------HhhCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCC
Confidence 1122 455555443 2111 1123344789999999976422 34444444442 2224888888865
Q ss_pred HHHHHHHHHc
Q 002040 661 QVEILARKVL 670 (976)
Q Consensus 661 ~~~~l~~~~l 670 (976)
...-+...|+
T Consensus 143 ~~~w~~~~f~ 152 (396)
T TIGR01547 143 PLHWVKKRFI 152 (396)
T ss_pred CccHHHHHHH
Confidence 3333333333
No 235
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.24 E-value=0.13 Score=58.49 Aligned_cols=167 Identities=16% Similarity=0.155 Sum_probs=82.8
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE-c-cCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM-A-PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl-~-Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
+.-++++|++|+|||+++.-.+...... .|..|+++ + +.|..+. ..+..++..+++.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-------~G~~V~Lit~Dt~R~aA~---eQLk~yAe~lgvp~~~~------- 285 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-------MGKSVSLYTTDNYRIAAI---EQLKRYADTMGMPFYPV------- 285 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCeEEEecccchhhhHH---HHHHHHHHhcCCCeeeh-------
Confidence 3457788999999998865554433222 13344443 3 3344443 24555555555433211
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccc-ccCCchHHHHHHHhcC---CCCcEEEEecc
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIR---PDRQTVLFSAT 657 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~-~~~f~~~i~~il~~~~---~~~q~i~~SAT 657 (976)
..+..+...+. -..+++||||=+-++. +......+..++..+. +...++++|||
T Consensus 286 --------------~~~~~l~~~l~--------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt 343 (432)
T PRK12724 286 --------------KDIKKFKETLA--------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSST 343 (432)
T ss_pred --------------HHHHHHHHHHH--------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCC
Confidence 01122222321 1357889999766542 1112223344444432 23457889999
Q ss_pred CcH-HHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCH
Q 002040 658 FPR-QVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQ 724 (976)
Q Consensus 658 ~~~-~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~ 724 (976)
... .+...+..|-.-++. .-++...+...+.-.++.++... +-|+..++..+
T Consensus 344 ~~~~~~~~~~~~f~~~~~~-------------glIlTKLDEt~~~G~il~i~~~~--~lPI~ylt~GQ 396 (432)
T PRK12724 344 SSYHHTLTVLKAYESLNYR-------------RILLTKLDEADFLGSFLELADTY--SKSFTYLSVGQ 396 (432)
T ss_pred CCHHHHHHHHHHhcCCCCC-------------EEEEEcccCCCCccHHHHHHHHH--CCCEEEEecCC
Confidence 877 444444444211110 01233445555666666666543 34555555543
No 236
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.19 E-value=0.015 Score=55.63 Aligned_cols=19 Identities=37% Similarity=0.335 Sum_probs=15.7
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+..++++||+|+|||+.+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 2 GEVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CCEEEEECCCCCcHHHHHH
Confidence 4678999999999998633
No 237
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.19 E-value=0.085 Score=60.48 Aligned_cols=173 Identities=17% Similarity=0.175 Sum_probs=86.4
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 582 (976)
.|.-+.++|+||+|||+.+...+...+... +.....+|.+.+.-.+ ..+.+..++..+|+.+..++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~-----~~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~------ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRH-----GADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKD------ 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-----CCCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCC------
Confidence 456688899999999987544333333221 1122356666663332 234455566666665543322
Q ss_pred HHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHH
Q 002040 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~ 661 (976)
+..+...+ ..+..+.+|+||-+=+... ......+..+.....+...+|++|||....
T Consensus 257 ---------------~~dl~~al-------~~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~ 314 (420)
T PRK14721 257 ---------------IADLQLML-------HELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGD 314 (420)
T ss_pred ---------------HHHHHHHH-------HHhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHH
Confidence 22222222 1344567777777532110 001122222222223445578899997554
Q ss_pred -HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 662 -VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 662 -~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
+...+..|-..++. .-++...+...++-.++.++... +-++..+++.+.
T Consensus 315 ~~~~~~~~f~~~~~~-------------~~I~TKlDEt~~~G~~l~~~~~~--~lPi~yvt~Gq~ 364 (420)
T PRK14721 315 TLDEVISAYQGHGIH-------------GCIITKVDEAASLGIALDAVIRR--KLVLHYVTNGQK 364 (420)
T ss_pred HHHHHHHHhcCCCCC-------------EEEEEeeeCCCCccHHHHHHHHh--CCCEEEEECCCC
Confidence 44444444322110 11234455566667777776653 346666666554
No 238
>PRK12377 putative replication protein; Provisional
Probab=96.16 E-value=0.037 Score=59.11 Aligned_cols=47 Identities=17% Similarity=0.183 Sum_probs=26.8
Q ss_pred cCCceEEEecCcccccccCC-chHHHHHHHhcCC-CCcEEEEeccCcHH
Q 002040 615 LRRVTYLVMDEADRMFDMGF-EPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f-~~~i~~il~~~~~-~~q~i~~SAT~~~~ 661 (976)
+..+++|||||++......+ ...+..|+..... ...+|++|--.+..
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 45689999999964322222 2344455554433 45677776654433
No 239
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.15 E-value=0.0073 Score=64.17 Aligned_cols=53 Identities=28% Similarity=0.383 Sum_probs=40.5
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCCchHHHHHHHHHHHHhcC
Q 002040 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (976)
Q Consensus 460 ~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~-d~i~~a~TGsGKT~~~~l~il~~l~~~ 532 (976)
..+|..+.+|.++++|+-+.+.+. ..+ =+||.||||||||++ +.+|+.++...
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~~-------------------~~~GLILVTGpTGSGKSTT-lAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELAE-------------------SPRGLILVTGPTGSGKSTT-LAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHHh-------------------CCCceEEEeCCCCCcHHHH-HHHHHHHHhcc
Confidence 356888999999999988776322 122 267789999999986 77888888765
No 240
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=96.10 E-value=0.025 Score=64.02 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=30.9
Q ss_pred chHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEe
Q 002040 516 GKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (976)
Q Consensus 516 GKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 574 (976)
+|-- |+-++.|++.. +..|||+-| |.+.+.+.+++|....|+.+..+
T Consensus 492 dk~H--clrl~r~F~hk-------nHLClVFE~---LslNLRevLKKyG~nvGL~ikaV 538 (752)
T KOG0670|consen 492 DKFH--CLRLFRHFKHK-------NHLCLVFEP---LSLNLREVLKKYGRNVGLHIKAV 538 (752)
T ss_pred hhhH--HHHHHHHhhhc-------ceeEEEehh---hhchHHHHHHHhCcccceeehHH
Confidence 4543 45566665542 456788777 67788888888887777665443
No 241
>PRK09183 transposase/IS protein; Provisional
Probab=96.06 E-value=0.056 Score=58.38 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=20.5
Q ss_pred HHHhcCCCEEEEcCCCCchHHHHHHH
Q 002040 499 PVIMSGRDCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 499 ~~il~g~d~i~~a~TGsGKT~~~~l~ 524 (976)
.++..+.+++++||+|+|||..+...
T Consensus 97 ~~i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 97 SFIERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred CchhcCCeEEEEeCCCCCHHHHHHHH
Confidence 34567889999999999999765443
No 242
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.03 E-value=0.07 Score=61.72 Aligned_cols=130 Identities=20% Similarity=0.231 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc-cC-HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-PT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~-Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 582 (976)
..++++|++|+|||++..-.+ .++... +..+++++ .+ +..+ +..+..++...++.+..........
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA-~~L~~~-------g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~- 163 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLA-RYFKKK-------GLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV- 163 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HHHHHc-------CCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH-
Confidence 457889999999998754433 333331 33444444 33 3322 3445555555555433211111100
Q ss_pred HHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHH
Q 002040 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~ 661 (976)
..+...+.. +..+++||||.+-++.. ......+..+.....++.-+++++||....
T Consensus 164 ----------------~i~~~al~~-------~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~ 220 (437)
T PRK00771 164 ----------------EIAKEGLEK-------FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQ 220 (437)
T ss_pred ----------------HHHHHHHHH-------hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHH
Confidence 011122221 22348899999965421 122334455556667777788899988765
Q ss_pred HHHHHHHH
Q 002040 662 VEILARKV 669 (976)
Q Consensus 662 ~~~l~~~~ 669 (976)
....+..|
T Consensus 221 av~~a~~F 228 (437)
T PRK00771 221 AKNQAKAF 228 (437)
T ss_pred HHHHHHHH
Confidence 54444443
No 243
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.02 E-value=0.15 Score=59.47 Aligned_cols=172 Identities=16% Similarity=0.200 Sum_probs=80.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 583 (976)
|.-++++|+||+|||++....+..+.... +....+||-+-+.-++ ..+.+..|+..+|+.+..........
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~-----G~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~~~~~Dl~-- 326 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH-----GASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAVKDAADLR-- 326 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc-----CCCeEEEEeCCccchh--HHHHHHHHHHHhCCCeeccCCchhHH--
Confidence 55688899999999987554443332221 1112334444442222 23556666666665443332222111
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhc-CCCCcEEEEeccCcHH-
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQ- 661 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~- 661 (976)
..+ ..+..+.+++||.+=+.............+... .+...+++++||....
T Consensus 327 -------------------~aL-------~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~ 380 (484)
T PRK06995 327 -------------------LAL-------SELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT 380 (484)
T ss_pred -------------------HHH-------HhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH
Confidence 111 234455677777754321110001111122222 1333567889887554
Q ss_pred HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 662 ~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
+...+..|-...+. .-++...+...++-.++.++..+ +-++..++..+.
T Consensus 381 l~~i~~~f~~~~~~-------------g~IlTKlDet~~~G~~l~i~~~~--~lPI~yvt~GQ~ 429 (484)
T PRK06995 381 LNEVVQAYRGPGLA-------------GCILTKLDEAASLGGALDVVIRY--KLPLHYVSNGQR 429 (484)
T ss_pred HHHHHHHhccCCCC-------------EEEEeCCCCcccchHHHHHHHHH--CCCeEEEecCCC
Confidence 33334333221110 01233455566677777776654 345555555443
No 244
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.01 E-value=0.043 Score=54.21 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=15.2
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il 526 (976)
++++|++|+|||+.+...+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~ 21 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLAL 21 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHH
Confidence 67899999999986444433
No 245
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.00 E-value=0.0072 Score=61.30 Aligned_cols=48 Identities=23% Similarity=0.233 Sum_probs=26.8
Q ss_pred HHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHH
Q 002040 499 PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (976)
Q Consensus 499 ~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q 555 (976)
.++-.+.++++.|++|+|||..+...+. .+... |..|++ +++..|...
T Consensus 42 ~~~~~~~~l~l~G~~G~GKThLa~ai~~-~~~~~-------g~~v~f-~~~~~L~~~ 89 (178)
T PF01695_consen 42 EFIENGENLILYGPPGTGKTHLAVAIAN-EAIRK-------GYSVLF-ITASDLLDE 89 (178)
T ss_dssp -S-SC--EEEEEESTTSSHHHHHHHHHH-HHHHT-------T--EEE-EEHHHHHHH
T ss_pred CCcccCeEEEEEhhHhHHHHHHHHHHHH-HhccC-------CcceeE-eecCceecc
Confidence 3344678999999999999987544443 33332 344555 455556544
No 246
>PRK05642 DNA replication initiation factor; Validated
Probab=95.95 E-value=0.022 Score=60.54 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=28.4
Q ss_pred CCceEEEecCccccccc-CCchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 616 RRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
..+++||||++|.+... .+...+..+++.+......+++++|.++
T Consensus 96 ~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 96 EQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 34679999999976432 2344567777766554445666666444
No 247
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.93 E-value=0.02 Score=71.37 Aligned_cols=71 Identities=14% Similarity=0.119 Sum_probs=53.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
..++|-|.+++.. ....++|.|..|||||.+.+.-+...+.... .....+|+|+.|+..|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3578999998864 3568999999999999985555554443221 123478999999999999988887764
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.82 E-value=0.066 Score=54.60 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=31.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
+++.|++|+|||+..+-.+...+. +|..|++++. .+...++...+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~--------~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA--------RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--------CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 688999999999876555555443 2556777764 34456665555543
No 249
>PRK06893 DNA replication initiation factor; Validated
Probab=95.82 E-value=0.025 Score=60.04 Aligned_cols=46 Identities=15% Similarity=0.294 Sum_probs=29.2
Q ss_pred CCceEEEecCccccccc-CCchHHHHHHHhcCC-CCcEEEEeccCcHH
Q 002040 616 RRVTYLVMDEADRMFDM-GFEPQITRIVQNIRP-DRQTVLFSATFPRQ 661 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~-~f~~~i~~il~~~~~-~~q~i~~SAT~~~~ 661 (976)
.++++|||||+|.+... .+...+..++..+.. ..++|++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45789999999977532 233345566665544 34567787776554
No 250
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.76 E-value=0.0052 Score=61.55 Aligned_cols=124 Identities=23% Similarity=0.246 Sum_probs=53.6
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHH
Q 002040 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL 587 (976)
Q Consensus 508 i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l 587 (976)
|+.|+-|-|||.+..+.+...+.. ....++|.+|+..-+..++..+...+..++++......+. ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-------cCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccc
Confidence 578999999998765554332221 1246899999998887777666655544444331000000 000011
Q ss_pred hcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCc
Q 002040 588 KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 588 ~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
..+..|.+..|..+... ....++||||||=.+. .+.+..++... ..++||.|..
T Consensus 71 ~~~~~i~f~~Pd~l~~~----------~~~~DlliVDEAAaIp----~p~L~~ll~~~----~~vv~stTi~ 124 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE----------KPQADLLIVDEAAAIP----LPLLKQLLRRF----PRVVFSTTIH 124 (177)
T ss_dssp --CCC--B--HHHHCCT--------------SCEEECTGGGS-----HHHHHHHHCCS----SEEEEEEEBS
T ss_pred cccceEEEECCHHHHhC----------cCCCCEEEEechhcCC----HHHHHHHHhhC----CEEEEEeecc
Confidence 12457777787755221 1235899999998653 44555554333 3678888864
No 251
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.74 E-value=1.2 Score=52.73 Aligned_cols=122 Identities=13% Similarity=0.184 Sum_probs=76.7
Q ss_pred cCcchHHHHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHHCCCC-------ceeccCCCCHHHHHHHHHHhc----
Q 002040 695 RPESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYP-------CLSLHGAKDQTDRESTISDFK---- 761 (976)
Q Consensus 695 ~~~~~k~~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~~-------~~~lhg~~~~~~R~~~~~~F~---- 761 (976)
.....-+..|...+..+. -+|.|++|+++......+...+...|+. .+.+-...+ -..++..|.
T Consensus 608 R~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~ 684 (821)
T KOG1133|consen 608 RESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAE 684 (821)
T ss_pred cCChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhh
Confidence 333444444444444332 1488999999999999999998876542 222222222 344555554
Q ss_pred cCCccEEEec--CcccccCCCCC--CcEEEEeCCCCC--------------------------------HHHHHHHhccc
Q 002040 762 SNVCNLLIAT--SVAARGLDVKE--LELVINFDAPNH--------------------------------YEDYVHRVGRT 805 (976)
Q Consensus 762 ~g~~~vLVaT--~v~~~GlDi~~--v~~VI~~d~p~s--------------------------------~~~y~Qr~GR~ 805 (976)
.|.-.||+|. .-++.|||+.+ +..||.+++|.. +-...|.||||
T Consensus 685 ~g~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRA 764 (821)
T KOG1133|consen 685 RGRGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRA 764 (821)
T ss_pred cCCCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 4555677664 57889999987 778888877642 11235999999
Q ss_pred CCCCCccEEEEEec
Q 002040 806 GRAGRKGCAITFIS 819 (976)
Q Consensus 806 gR~g~~g~~~~~~~ 819 (976)
-|.-+.--++++++
T Consensus 765 IRH~~DYA~i~LlD 778 (821)
T KOG1133|consen 765 IRHRKDYASIYLLD 778 (821)
T ss_pred HhhhccceeEEEeh
Confidence 99765544555554
No 252
>PRK10867 signal recognition particle protein; Provisional
Probab=95.71 E-value=0.13 Score=59.47 Aligned_cols=59 Identities=20% Similarity=0.221 Sum_probs=32.8
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc--cCHHHHHHHHHHHHHHHhhcCcEEEEe
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPV 574 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~--Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 574 (976)
-++++|++|+|||++..-.+.. +... .|.+|++++ +.|..+. ..+..++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~-l~~~------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKY-LKKK------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHh------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEec
Confidence 4778899999999875444433 3221 134455444 3444333 33445555567665543
No 253
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.69 E-value=0.065 Score=57.63 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=33.6
Q ss_pred HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
+.++.++++.|++|+|||..++..+...+ .. |. -++++++.+|+.++...+
T Consensus 102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-------g~-sv~f~~~~el~~~Lk~~~ 152 (254)
T COG1484 102 FERGENLVLLGPPGVGKTHLAIAIGNELL-KA-------GI-SVLFITAPDLLSKLKAAF 152 (254)
T ss_pred hccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-------CC-eEEEEEHHHHHHHHHHHH
Confidence 33778999999999999987554444443 31 33 355567777776654443
No 254
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.63 E-value=0.043 Score=67.31 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=53.1
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
..-..+++-|..|+-. ...+++|.|..|||||.+.+.-+...+... ...+..+|+|+.|+.+|..+.+.+...
T Consensus 192 ~e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~----~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 192 VESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARG----QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred ccCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhC----CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 3445689999998853 345789999999999998555554444332 112457999999999999888877764
No 255
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.59 E-value=0.13 Score=62.44 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=91.7
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCC--CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 482 IRKLNYEKPMPIQAQALPVIMSGR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 482 l~~~~~~~p~~~Q~~~i~~il~g~--d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
|..+..+.+..-|.+.+..++... -+++.|.-|=|||.+..+.+....... ....++|.+|+.+-+..++..
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~------~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLA------GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhc------CCceEEEeCCCHHHHHHHHHH
Confidence 444444555555555666666554 578889999999998776663222211 134789999999998888888
Q ss_pred HHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHH
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~ 639 (976)
+.+-+..+|+.-.+........ +..-.....|-+.+|.... . ..++||||||=.|. .+.+.
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~--~~~~~~~~~i~y~~P~~a~------------~-~~DllvVDEAAaIp----lplL~ 341 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEI--REVSGDGFRIEYVPPDDAQ------------E-EADLLVVDEAAAIP----LPLLH 341 (758)
T ss_pred HHHhHHHhCCccccccccccce--eeecCCceeEEeeCcchhc------------c-cCCEEEEehhhcCC----hHHHH
Confidence 8777777775543322221000 0000112345566665331 1 15799999998653 55666
Q ss_pred HHHHhcCCCCcEEEEeccCc
Q 002040 640 RIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 640 ~il~~~~~~~q~i~~SAT~~ 659 (976)
.++..+ +.++||.|+.
T Consensus 342 ~l~~~~----~rv~~sTTIh 357 (758)
T COG1444 342 KLLRRF----PRVLFSTTIH 357 (758)
T ss_pred HHHhhc----CceEEEeeec
Confidence 666654 3689999974
No 256
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.57 E-value=0.17 Score=55.09 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=83.9
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc-c-CHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~-P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 582 (976)
+-++++|++|+|||++..-.+... .. .+.+|+++. - .|.-+. ..+..++...++.+.....+.....
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~-------~g~~V~li~~D~~r~~a~---~ql~~~~~~~~i~~~~~~~~~dp~~ 141 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK-------QGKSVLLAAGDTFRAAAI---EQLEEWAKRLGVDVIKQKEGADPAA 141 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCEEEEEeCCCCCHHHH---HHHHHHHHhCCeEEEeCCCCCCHHH
Confidence 457778999999998754444332 22 244555554 3 343332 3455555556655443222211111
Q ss_pred HHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc-cCCchHHHHHHHhcC------CCCcEEEEe
Q 002040 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIR------PDRQTVLFS 655 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~~~~------~~~q~i~~S 655 (976)
.+...+.. .....+++||||=+-++.. ......+..+...+. ++.-+++++
T Consensus 142 -----------------~~~~~l~~-----~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~ 199 (272)
T TIGR00064 142 -----------------VAFDAIQK-----AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLD 199 (272)
T ss_pred -----------------HHHHHHHH-----HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEE
Confidence 01111111 1124467788887765431 112233444444444 566688899
Q ss_pred ccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 656 ATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 656 AT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
||........+..+.... .+ ..-.+...+...+.-.++.+.... +-|+..++..+.
T Consensus 200 a~~~~~~~~~~~~f~~~~---~~---------~g~IlTKlDe~~~~G~~l~~~~~~--~~Pi~~~~~Gq~ 255 (272)
T TIGR00064 200 ATTGQNALEQAKVFNEAV---GL---------TGIILTKLDGTAKGGIILSIAYEL--KLPIKFIGVGEK 255 (272)
T ss_pred CCCCHHHHHHHHHHHhhC---CC---------CEEEEEccCCCCCccHHHHHHHHH--CcCEEEEeCCCC
Confidence 997665444444443211 00 011123334455555566655543 345555554443
No 257
>PTZ00293 thymidine kinase; Provisional
Probab=95.55 E-value=0.06 Score=55.55 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=27.5
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
|.-.++.|||+||||..++-.+.++... +..++++-|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEec
Confidence 4456789999999998766655555432 4568888885
No 258
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.53 E-value=0.047 Score=58.13 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+..++++||+|+|||..+
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 357899999999999753
No 259
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.52 E-value=0.061 Score=70.57 Aligned_cols=62 Identities=24% Similarity=0.320 Sum_probs=45.2
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHH--HHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH
Q 002040 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAF--VLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~--~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 556 (976)
.+++-|.+|+..++.. +-++|.|..|+|||+++ ++.++..+.. ..+..++.++||-..+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 66888999999999863 2222322221 2356788999998776655
No 260
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.51 E-value=0.16 Score=58.41 Aligned_cols=131 Identities=15% Similarity=0.150 Sum_probs=64.2
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc--cCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~--Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 583 (976)
-++++|++|+|||++..-.+. ++.. .|.+|++++ |.|..|. .+++.++...++.+...+.+......
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~-------~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR-------KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH-------CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCCCHHHH
Confidence 467889999999987443333 3332 144555554 3454444 33444555566666554443321110
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc-CCchHHHHHHHhcCCCCcEEEEeccCcHHH
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~~~~ 662 (976)
.. ..+.. ..-..+++||||=+-++... .....+..+.....|+.-+++++||.....
T Consensus 171 ~~-----------------~~l~~-----~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 171 AS-----------------EGVEK-----FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA 228 (429)
T ss_pred HH-----------------HHHHH-----HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH
Confidence 00 00100 00123556666666543211 122334444455556666777888876554
Q ss_pred HHHHHHH
Q 002040 663 EILARKV 669 (976)
Q Consensus 663 ~~l~~~~ 669 (976)
...+..|
T Consensus 229 ~~~a~~F 235 (429)
T TIGR01425 229 EAQAKAF 235 (429)
T ss_pred HHHHHHH
Confidence 4444444
No 261
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.50 E-value=0.075 Score=70.70 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=46.1
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 556 (976)
..+++.|.+|+..++.. +-++|.|..|+|||++ +-.++..+... ....+..++.++||--.|..+
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~-l~~v~~~~~~l---~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ-FRAVMSAVNTL---PESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH-HHHHHHHHHHh---hcccCceEEEECCcHHHHHHH
Confidence 35899999999999975 4688889999999986 33344333221 112356788999998776544
No 262
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.46 E-value=0.058 Score=57.69 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=31.3
Q ss_pred ccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 614 ~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
....+.+|||||||.|.... +..+.+++........+|+.+..+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 45668899999999886443 556677777766666677766654
No 263
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.46 E-value=0.25 Score=58.98 Aligned_cols=148 Identities=11% Similarity=0.116 Sum_probs=83.3
Q ss_pred CCCcHHHHHHHHHH---hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVI---MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 488 ~~p~~~Q~~~i~~i---l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
..|.|.-.+-|..+ +..+-.++.+|=|.|||.+..+.++..+.. .+..++|++|...-+.+++..+..++
T Consensus 168 ~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-------~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 168 EAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-------LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred CCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-------cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 34444444444444 455678888999999998765554433321 25679999999999999999988888
Q ss_pred hhcCc--------EEEEeeCCCChHHHHHHHhcCCeEEEeCchhHH------HHHHhcCCcccccCCceEEEecCccccc
Q 002040 565 KVMGV--------RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI------DILCTSGGKITNLRRVTYLVMDEADRMF 630 (976)
Q Consensus 565 ~~~~~--------~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~------~~l~~~~~~~~~l~~~~~vVlDEah~~~ 630 (976)
..++. .+..+.||. -.|.+..|.... ....+.... ..-..+++||||||+-+.
T Consensus 241 e~lg~~~~fp~~~~iv~vkgg~------------E~I~f~~p~gak~G~sti~F~Ars~~s-~RG~~~DLLIVDEAAfI~ 307 (752)
T PHA03333 241 HAYQHKPWFPEEFKIVTLKGTD------------ENLEYISDPAAKEGKTTAHFLASSPNA-ARGQNPDLVIVDEAAFVN 307 (752)
T ss_pred HHhccccccCCCceEEEeeCCe------------eEEEEecCcccccCcceeEEecccCCC-cCCCCCCEEEEECcccCC
Confidence 74431 111122221 123333221110 000000100 122356899999999764
Q ss_pred ccCCchHHHHHHHhcC-CCCcEEEEeccCc
Q 002040 631 DMGFEPQITRIVQNIR-PDRQTVLFSATFP 659 (976)
Q Consensus 631 ~~~f~~~i~~il~~~~-~~~q~i~~SAT~~ 659 (976)
. ..+..++-.+. ...++|++|.+..
T Consensus 308 ~----~~l~aIlP~l~~~~~k~IiISS~~~ 333 (752)
T PHA03333 308 P----GALLSVLPLMAVKGTKQIHISSPVD 333 (752)
T ss_pred H----HHHHHHHHHHccCCCceEEEeCCCC
Confidence 3 34444544443 3566777777753
No 264
>PRK08727 hypothetical protein; Validated
Probab=95.42 E-value=0.063 Score=57.10 Aligned_cols=47 Identities=9% Similarity=0.108 Sum_probs=26.0
Q ss_pred CCceEEEecCcccccccC-CchHHHHHHHhcCC-CCcEEEEeccCcHHH
Q 002040 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~~-~~q~i~~SAT~~~~~ 662 (976)
..+.+|||||+|.+.... ....+..++..+.. ..++|+.|..+|...
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 346799999999775432 22234445544432 334555555555443
No 265
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.41 E-value=0.079 Score=55.93 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+..+++.|++|+|||..+.
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35679999999999997643
No 266
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.39 E-value=0.072 Score=57.66 Aligned_cols=114 Identities=20% Similarity=0.282 Sum_probs=58.7
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCC---CCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG---DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~---~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
.+++++|+||.|||...--..-.| +..... .-|.++|-+|...-..-+|..|-. .++..+.. .....
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~h----p~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~---~lgaP~~~---~~~~~ 131 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLH----PPQSDEDAERIPVVYVQMPPEPDERRFYSAILE---ALGAPYRP---RDRVA 131 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHC----CCCCCCCCccccEEEEecCCCCChHHHHHHHHH---HhCcccCC---CCCHH
Confidence 479999999999998532222222 221111 236777778876655555554433 23322110 11111
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchH--HHHHHHhcCCCCc
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQ--ITRIVQNIRPDRQ 650 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~--i~~il~~~~~~~q 650 (976)
.. . .....+|.. -.+.+|||||+|.++......+ +...++.+....+
T Consensus 132 ~~----~----------~~~~~llr~--------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 132 KL----E----------QQVLRLLRR--------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred HH----H----------HHHHHHHHH--------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 10 0 011123322 2478999999999876543332 3445555555444
No 267
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.088 Score=58.82 Aligned_cols=37 Identities=14% Similarity=0.003 Sum_probs=28.0
Q ss_pred CcHHHHHHHHHHhcCC----CEEEEcCCCCchHHHHHHHHH
Q 002040 490 PMPIQAQALPVIMSGR----DCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~----d~i~~a~TGsGKT~~~~l~il 526 (976)
++|+|...|..++... -+|+.||.|.|||..+...+-
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 4689999998887542 488999999999976544333
No 268
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.33 E-value=0.092 Score=61.39 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=57.8
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 584 (976)
+.+++.|++|+|||.. +.++.+.+... ..+..++++.+ ..+...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~-----~~~~~v~yv~~-~~f~~~~~~~l~~~~-------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESN-----FSDLKVSYMSG-DEFARKAVDILQKTH-------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCeEEEEEH-HHHHHHHHHHHHHhh--------------------
Confidence 4588999999999964 34445544432 12445555544 455544433332100
Q ss_pred HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHHHHHHHhcCC-CCcEEEEeccCcHHH
Q 002040 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQV 662 (976)
Q Consensus 585 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~~-~~q~i~~SAT~~~~~ 662 (976)
+.+..+. ..+..+++|||||+|.+.... ....+..+++.+.. ..|+|++|-..|..+
T Consensus 195 --------------~~~~~~~-------~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 --------------KEIEQFK-------NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred --------------hHHHHHH-------HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 1111111 123457899999999764321 23345555555433 345555555554443
No 269
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.26 E-value=0.077 Score=56.17 Aligned_cols=42 Identities=14% Similarity=0.283 Sum_probs=25.2
Q ss_pred ceEEEecCcccccccCCchHHHHHHHhcCCCCc-EEEEeccCcH
Q 002040 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQ-TVLFSATFPR 660 (976)
Q Consensus 618 ~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q-~i~~SAT~~~ 660 (976)
.++|||||+|.+... -...+..++..+..... +++++++.++
T Consensus 91 ~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 91 AELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred CCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 568999999976432 23334455554443333 5777777554
No 270
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.26 E-value=0.089 Score=63.66 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=24.3
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
..+.+|||||+|.|....| ..+.+++..-+....+|+ ++|
T Consensus 118 gr~KVIIIDEah~LT~~A~-NALLKtLEEPP~~v~FIL-aTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAF-NAMLKTLEEPPPHVKFIL-ATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHH-HHHHHHHHhcCCCeEEEE-EEC
Confidence 3578999999998765433 334445555544444444 444
No 271
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.25 E-value=0.067 Score=55.39 Aligned_cols=16 Identities=25% Similarity=0.168 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
++|++||+|+|||+.+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999753
No 272
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.17 E-value=0.042 Score=67.74 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=53.2
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
.+++-|.+|+.. ....++|.|..|||||.+.+.-+...|.... .....+|+|+.|+..|..+...+..++.
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 367899998865 3567899999999999986665555554321 1234699999999999999888877643
No 273
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.15 E-value=0.24 Score=57.21 Aligned_cols=60 Identities=20% Similarity=0.182 Sum_probs=32.5
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE-ccC-HHHHHHHHHHHHHHHhhcCcEEEEee
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM-APT-RELVQQIHSDIRKFAKVMGVRCVPVY 575 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl-~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~ 575 (976)
-++++|++|+|||+++.-.+...... .|.+|+++ |-+ |..|. ..+..++...++.+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~-------~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~ 162 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKK-------QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALG 162 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh-------CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecC
Confidence 47888999999998755444432211 13344444 433 33332 344455555666655433
No 274
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.049 Score=64.90 Aligned_cols=42 Identities=12% Similarity=0.232 Sum_probs=25.6
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
...+.++||||+|.|....| ..+.+++..-+....+|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~Aa-NALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAF-NAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHH-HHHHHhhccCCCCceEEEEeCC
Confidence 34678999999998764443 2344455554455555555443
No 275
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.11 E-value=0.13 Score=59.97 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=29.2
Q ss_pred CCceEEEecCcccccccC-CchHHHHHHHhcC-CCCcEEEEeccCcHHHHHH
Q 002040 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQVEIL 665 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~-~~~q~i~~SAT~~~~~~~l 665 (976)
..+++|||||+|.+.... ....+..+++.+. ...++|+.|.+.|..+..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 457899999999875432 2233445554442 3456666665566655433
No 276
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.10 E-value=0.096 Score=61.61 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=18.5
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
..+++.|++|+|||.. +.++...+..
T Consensus 149 ~~l~l~G~~G~GKThL-~~ai~~~~~~ 174 (450)
T PRK00149 149 NPLFIYGGVGLGKTHL-LHAIGNYILE 174 (450)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 4589999999999975 3444444443
No 277
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.08 E-value=0.14 Score=55.98 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=17.8
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il 526 (976)
.+..++++||||+|||++....+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345688899999999987544433
No 278
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.08 E-value=0.082 Score=65.40 Aligned_cols=94 Identities=17% Similarity=0.223 Sum_probs=73.0
Q ss_pred cCcchHHHH-HHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHH----CCCCceeccCCCCHHHHHHHHHHhccCCccEEE
Q 002040 695 RPESDRFLR-LLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (976)
Q Consensus 695 ~~~~~k~~~-l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 769 (976)
...+.|... ++.++.....+.+++|.+||..-+.+++..|.. .|+.+..+||+++..++..++..+.+|.+.|||
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvV 369 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVI 369 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEE
Confidence 334555443 333444444556899999999998888777654 478999999999999999999999999999999
Q ss_pred ecCc-ccccCCCCCCcEEEE
Q 002040 770 ATSV-AARGLDVKELELVIN 788 (976)
Q Consensus 770 aT~v-~~~GlDi~~v~~VI~ 788 (976)
+|.. +...+.+.++.+||.
T Consensus 370 gT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 370 GTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred chHHHhcccchhcccceEEE
Confidence 9974 445677889998885
No 279
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.06 E-value=0.46 Score=51.94 Aligned_cols=130 Identities=20% Similarity=0.296 Sum_probs=70.9
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc--CHHHHHHHHHHHHHHHhhcCcEEEE-eeCCCChHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP--TRELVQQIHSDIRKFAKVMGVRCVP-VYGGSGVAQ 582 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P--tr~La~Q~~~~~~~~~~~~~~~~~~-~~gg~~~~~ 582 (976)
-++++|-.|+|||++.. -+..++.. .|..||+.+. .|+-|. +++.-|+...|+.++. -+|+.+..-
T Consensus 141 Vil~vGVNG~GKTTTIa-KLA~~l~~-------~g~~VllaA~DTFRAaAi---EQL~~w~er~gv~vI~~~~G~DpAaV 209 (340)
T COG0552 141 VILFVGVNGVGKTTTIA-KLAKYLKQ-------QGKSVLLAAGDTFRAAAI---EQLEVWGERLGVPVISGKEGADPAAV 209 (340)
T ss_pred EEEEEecCCCchHhHHH-HHHHHHHH-------CCCeEEEEecchHHHHHH---HHHHHHHHHhCCeEEccCCCCCcHHH
Confidence 47788999999998733 33333332 3666776664 344444 5566666668888776 334333222
Q ss_pred HHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHHHHHHHhcCCCC------cEEEEe
Q 002040 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQNIRPDR------QTVLFS 655 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~~~~------q~i~~S 655 (976)
.. +.+.. ..-..+++|++|=|-||-+.. .-..+..|..-+.+.. -++++=
T Consensus 210 af------------------DAi~~-----Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlD 266 (340)
T COG0552 210 AF------------------DAIQA-----AKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLD 266 (340)
T ss_pred HH------------------HHHHH-----HHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEE
Confidence 21 22221 123446677777777665432 3344555555554443 234447
Q ss_pred ccCcHHHHHHHHHH
Q 002040 656 ATFPRQVEILARKV 669 (976)
Q Consensus 656 AT~~~~~~~l~~~~ 669 (976)
||...+.-.-++.|
T Consensus 267 AttGqnal~QAk~F 280 (340)
T COG0552 267 ATTGQNALSQAKIF 280 (340)
T ss_pred cccChhHHHHHHHH
Confidence 88776654444433
No 280
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.05 E-value=0.085 Score=58.59 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=15.8
Q ss_pred CCEEEEcCCCCchHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l 523 (976)
.++|++||+|+|||+.+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3799999999999986543
No 281
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.99 E-value=0.18 Score=56.38 Aligned_cols=40 Identities=10% Similarity=0.157 Sum_probs=25.4
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEec
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SA 656 (976)
...+|||||+|.+........+..++.......++|+.|.
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcC
Confidence 4679999999987333233455566666666666555443
No 282
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.93 E-value=0.1 Score=60.49 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=23.5
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
..+++.|++|+|||.. +.++.+.+... ..+..++++.
T Consensus 137 n~l~l~G~~G~GKThL-~~ai~~~l~~~-----~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHL-LHAIGNEILEN-----NPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHH-HHHHHHHHHHh-----CCCCcEEEEE
Confidence 4578999999999975 34455555432 1134556654
No 283
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.91 E-value=0.23 Score=54.99 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=18.8
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
++.+++.|++|+|||..+. ++.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4679999999999997643 4444443
No 284
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.89 E-value=0.15 Score=60.91 Aligned_cols=48 Identities=21% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCceEEEecCcccccccC-CchHHHHHHHhcCC-CCcEEEEeccCcHHHH
Q 002040 616 RRVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVE 663 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~~-~~q~i~~SAT~~~~~~ 663 (976)
..+++||||++|.+.... ....+..+++.+.. +.++|+.|-..|..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 457899999999775433 22345556665544 4667766666555543
No 285
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.82 E-value=0.14 Score=67.54 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=81.5
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCc
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~ 569 (976)
+|+-|.++|. ..+.+++|.|.-|||||.+.+--++..+... ..-..+||||=|+..|..+...+.......-.
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 5789999997 4688999999999999999777777776643 11235899999999999988888765432110
Q ss_pred EEEEeeCCCChHH-HHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccc
Q 002040 570 RCVPVYGGSGVAQ-QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (976)
Q Consensus 570 ~~~~~~gg~~~~~-~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~ 628 (976)
..+... ....+..-...-|+|...|...+.........|. ..+=|+||...
T Consensus 75 -------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 75 -------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred -------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 011111 1122222245678999888766655443333332 34567888874
No 286
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.81 E-value=0.19 Score=62.08 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=72.7
Q ss_pred cchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHH-CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcc
Q 002040 697 ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~ 774 (976)
.+.|....+..+.... .+.++||.++++..+.++...|.+ .|..+..+||+++..++..++..+..|..+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 3455555554444433 355899999999999999999976 47889999999999999999999999999999999744
Q ss_pred cccCCCCCCcEEEEeC
Q 002040 775 ARGLDVKELELVINFD 790 (976)
Q Consensus 775 ~~GlDi~~v~~VI~~d 790 (976)
.. +.+.++.+||.-.
T Consensus 252 l~-~p~~~l~liVvDE 266 (679)
T PRK05580 252 LF-LPFKNLGLIIVDE 266 (679)
T ss_pred hc-ccccCCCEEEEEC
Confidence 32 5677888888543
No 287
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.74 E-value=0.25 Score=49.83 Aligned_cols=89 Identities=20% Similarity=0.140 Sum_probs=55.0
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 584 (976)
+=.+++|||+||||...+..+.++.. .|.+++|..|-..- .++...+...-|...
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~--------~g~~v~vfkp~iD~-------------R~~~~~V~Sr~G~~~---- 59 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKE--------AGMKVLVFKPAIDT-------------RYGVGKVSSRIGLSS---- 59 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHH--------cCCeEEEEeccccc-------------ccccceeeeccCCcc----
Confidence 34678899999999976655555533 25678888884211 123333333333321
Q ss_pred HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccc
Q 002040 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR 628 (976)
Q Consensus 585 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~ 628 (976)
.-++|-++..+.+.+.... ....+.+|.||||+-
T Consensus 60 ------~A~~i~~~~~i~~~i~~~~----~~~~~~~v~IDEaQF 93 (201)
T COG1435 60 ------EAVVIPSDTDIFDEIAALH----EKPPVDCVLIDEAQF 93 (201)
T ss_pred ------cceecCChHHHHHHHHhcc----cCCCcCEEEEehhHh
Confidence 3456667777777776532 222278999999994
No 288
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.74 E-value=0.093 Score=60.16 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=26.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHH
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~ 522 (976)
+-......+..+..++++|+.|++|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 445566677788889999999999999998654
No 289
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.59 E-value=0.13 Score=64.22 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=26.6
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
..+.+|||||||+|.... ...+.++|...+....+||++ |-
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~ 159 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TE 159 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CC
Confidence 568899999999886433 334556666655555555544 53
No 290
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.58 E-value=0.17 Score=57.03 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=23.9
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
....+|||||+|.+... ....+..++...+....+|+++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEEEe
Confidence 45679999999976432 2334555666555555555443
No 291
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=94.53 E-value=0.0045 Score=74.20 Aligned_cols=10 Identities=20% Similarity=0.321 Sum_probs=4.4
Q ss_pred ccEEEEEecC
Q 002040 811 KGCAITFISE 820 (976)
Q Consensus 811 ~g~~~~~~~~ 820 (976)
.-.++.|+++
T Consensus 492 r~v~~~~~~~ 501 (509)
T TIGR01642 492 RVVVAAFYGE 501 (509)
T ss_pred eEEEEEEeCH
Confidence 3344445443
No 292
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.3 Score=54.21 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCCcHHHHHHHHHHh----cCC---CEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 488 EKPMPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il----~g~---d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
..++|+|..++..+. +++ -+|+.|+.|+||+..+.. +...++
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~-lA~~Ll 51 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA-LAEHVL 51 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH-HHHHHh
Confidence 457889998887765 343 488999999999976443 344443
No 293
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.52 E-value=0.17 Score=58.82 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=44.9
Q ss_pred HHHHHHHHHhc--CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 493 IQAQALPVIMS--GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 493 ~Q~~~i~~il~--g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
+|.+==..|.. +.-+||+|..|||||++++--+...+...+..-. +..|||+.|.+.++.-+.+.+-.
T Consensus 213 IQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~--~k~vlvl~PN~vFleYis~VLPe 282 (747)
T COG3973 213 IQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQ--AKPVLVLGPNRVFLEYISRVLPE 282 (747)
T ss_pred hhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccc--cCceEEEcCcHHHHHHHHHhchh
Confidence 44444444443 4568889999999999877666666666543322 33499999999887655444433
No 294
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.51 E-value=0.24 Score=57.52 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=85.6
Q ss_pred CCcHHHHHHHHHHhc------C----CCEEEEcCCCCchHHHHH-HHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHH
Q 002040 489 KPMPIQAQALPVIMS------G----RDCIGVAKTGSGKTLAFV-LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~------g----~d~i~~a~TGsGKT~~~~-l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 557 (976)
.+.|+|.-++..|+. | +..+|..|-|-|||..+. +.+...+... ..+..+.|++|+.+-+.+.+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHhh
Confidence 466999999998882 1 247777888899997654 3344444433 34677899999999998888
Q ss_pred HHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCch
Q 002040 558 SDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP 636 (976)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~ 636 (976)
+.++....... .... ...+.. ...|++.--...+..+...... .+-.+..+.|+||.|...+.+ .
T Consensus 136 ~~ar~mv~~~~-~l~~----------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~-~Dg~~~~~~I~DEih~f~~~~--~ 201 (546)
T COG4626 136 NPARDMVKRDD-DLRD----------LCNVQTHSRTITHRKTDSTIKAVAADPNT-VDGLNSVGAIIDELHLFGKQE--D 201 (546)
T ss_pred HHHHHHHHhCc-chhh----------hhccccceeEEEecccceeeeeeccCCCc-ccCCCcceEEEehhhhhcCHH--H
Confidence 88877654433 0000 001111 1112222222223333333222 234467899999999765432 3
Q ss_pred HHHHHHHhc--CCCCcEEEEec
Q 002040 637 QITRIVQNI--RPDRQTVLFSA 656 (976)
Q Consensus 637 ~i~~il~~~--~~~~q~i~~SA 656 (976)
.+..+..-+ +++.+++..|.
T Consensus 202 ~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 202 MYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHHhhhccCcCceEEEEec
Confidence 444443333 46677777665
No 295
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.44 E-value=0.17 Score=69.26 Aligned_cols=62 Identities=29% Similarity=0.316 Sum_probs=44.7
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHH---HHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH
Q 002040 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFV---LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI 556 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~---l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~ 556 (976)
..+++.|.+|+..|+.+ +-++|.|..|+|||+++. -++...+.. .+..++.++||-..|..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 36899999999999876 456778999999998641 223333222 356788999997776554
No 296
>PF13173 AAA_14: AAA domain
Probab=94.43 E-value=0.28 Score=46.77 Aligned_cols=38 Identities=21% Similarity=0.395 Sum_probs=24.5
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
.-.+|||||+|.+. ++...+..++... ++.++|+++..
T Consensus 61 ~~~~i~iDEiq~~~--~~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLP--DWEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhc--cHHHHHHHHHHhc-cCceEEEEccc
Confidence 35789999999874 3456666666644 45555554443
No 297
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.43 E-value=0.89 Score=45.72 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=28.2
Q ss_pred CceEEEecCccccc-ccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHH
Q 002040 617 RVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669 (976)
Q Consensus 617 ~~~~vVlDEah~~~-~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~ 669 (976)
.+.+||+|....+. +......+..+.....++.-+++++|+.+......+..+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 46788888887542 112233333333334455566777776555444444444
No 298
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.40 E-value=0.48 Score=46.84 Aligned_cols=53 Identities=15% Similarity=0.256 Sum_probs=40.5
Q ss_pred cCCceEEEecCcccccccCCc--hHHHHHHHhcCCCCcEEEEeccCcHHHHHHHH
Q 002040 615 LRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~--~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~ 667 (976)
...+++|||||+-..++.++. ..+..++...+...-+|+++-.+|+.+..++.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 456899999999987777754 45777788877777788888888888766543
No 299
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.37 E-value=0.42 Score=57.91 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=15.4
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~i 525 (976)
+|+.|+.|+|||+++.+.+
T Consensus 41 yLf~Gp~GvGKTTlAr~lA 59 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLLA 59 (647)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998755443
No 300
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.36 E-value=0.35 Score=59.22 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=16.5
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHh
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
++|.|+||+|||++ +..++..|.
T Consensus 784 LYIyG~PGTGKTAT-VK~VLrELq 806 (1164)
T PTZ00112 784 LYISGMPGTGKTAT-VYSVIQLLQ 806 (1164)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 35899999999987 444455543
No 301
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.34 E-value=0.34 Score=56.61 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=27.3
Q ss_pred CceEEEecCcccccccC-CchHHHHHHHhcCC-CCcEEEEeccCcHHHHHH
Q 002040 617 RVTYLVMDEADRMFDMG-FEPQITRIVQNIRP-DRQTVLFSATFPRQVEIL 665 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~-f~~~i~~il~~~~~-~~q~i~~SAT~~~~~~~l 665 (976)
.+++|||||+|.+.+.. ....+..++..+.. ..++|+.|...|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 36799999999775432 12334445544433 345555554555555443
No 302
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=94.33 E-value=0.33 Score=52.66 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCEEEEcCCCCchHHHHH
Q 002040 495 AQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 495 ~~~i~~il~g~d~i~~a~TGsGKT~~~~ 522 (976)
..++..+..+.++++.|++|+|||..+.
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHH
Confidence 4456667789999999999999998643
No 303
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.27 E-value=0.14 Score=62.78 Aligned_cols=92 Identities=18% Similarity=0.252 Sum_probs=71.7
Q ss_pred cchHHH-HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHH----CCCCceeccCCCCHHHHHHHHHHhccCCccEEEec
Q 002040 697 ESDRFL-RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (976)
Q Consensus 697 ~~~k~~-~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 771 (976)
.+.|.. .++.++.....+.+++|.+||..-+.+++..|.. .|+.+..+||+++...+..++..+.+|.+.|||+|
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT 345 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGT 345 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEec
Confidence 344443 3334444444566999999999998888777664 37899999999999999999999999999999999
Q ss_pred Cccc-ccCCCCCCcEEEE
Q 002040 772 SVAA-RGLDVKELELVIN 788 (976)
Q Consensus 772 ~v~~-~GlDi~~v~~VI~ 788 (976)
..+- ..+.+.++.+||.
T Consensus 346 ~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 346 HALIQEKVEFKRLALVII 363 (630)
T ss_pred HHHHhccccccccceEEE
Confidence 8443 5677888888884
No 304
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.25 E-value=0.22 Score=59.24 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHC-CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcc
Q 002040 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~ 774 (976)
.+.|....+.++..... ++++||.+|+..-+..++..|... +..+..+||+++..+|..++....+|..+|+|+|..+
T Consensus 7 GsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 7 GSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 34555555555544433 458999999999999999988764 7789999999999999999999999999999999754
Q ss_pred cccCCCCCCcEEEEe
Q 002040 775 ARGLDVKELELVINF 789 (976)
Q Consensus 775 ~~GlDi~~v~~VI~~ 789 (976)
-. +.+.++.+||.-
T Consensus 87 lf-~p~~~l~lIIVD 100 (505)
T TIGR00595 87 LF-LPFKNLGLIIVD 100 (505)
T ss_pred Hc-CcccCCCEEEEE
Confidence 32 456778888853
No 305
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.24 E-value=0.14 Score=55.39 Aligned_cols=18 Identities=28% Similarity=0.200 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
.++|+.||+|+|||+.+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999998643
No 306
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.22 E-value=0.22 Score=59.71 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
..+.++||||+|+|....+ ..+..++...+....+| |++|
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FI-LaTt 156 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFL-FATT 156 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEE-EEEC
Confidence 4578999999997754332 34555555544444444 4445
No 307
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.19 E-value=0.82 Score=53.84 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=76.1
Q ss_pred cHHHHHHHHHHhc-------CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 491 MPIQAQALPVIMS-------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 491 ~~~Q~~~i~~il~-------g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
|-.|..|+-.++. .--+-+.|.-|-||+.+..+.+...+... -..+.|..|.-+-...+++.+-+=
T Consensus 255 T~dQakav~~f~dai~eK~lr~~vsLtA~RGRGKSAALGlsiA~AVa~G-------ysnIyvtSPspeNlkTlFeFv~kG 327 (1011)
T KOG2036|consen 255 TLDQAKAVLTFFDAIVEKTLRSTVSLTASRGRGKSAALGLSIAGAVAFG-------YSNIYVTSPSPENLKTLFEFVFKG 327 (1011)
T ss_pred hHHHHHHHHHHHHHHHHhhhcceEEEEecCCCCchhhhhHHHHHHHhcC-------cceEEEcCCChHHHHHHHHHHHcc
Confidence 5668777765542 23467789999999999888887776542 224677789877665555444332
Q ss_pred HhhcCcEE----EEeeCCCChHHH-HH--HHhcC--CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCC
Q 002040 564 AKVMGVRC----VPVYGGSGVAQQ-IS--ELKRG--TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF 634 (976)
Q Consensus 564 ~~~~~~~~----~~~~gg~~~~~~-~~--~l~~~--~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f 634 (976)
+..++..- -++..-++.... +. .+.++ --|-+..|. ....|....+||||||-.+.
T Consensus 328 fDaL~Yqeh~Dy~iI~s~np~fkkaivRInifr~hrQtIQYi~P~-----------D~~kl~q~eLlVIDEAAAIP---- 392 (1011)
T KOG2036|consen 328 FDALEYQEHVDYDIIQSTNPDFKKAIVRINIFREHRQTIQYISPH-----------DHQKLGQAELLVIDEAAAIP---- 392 (1011)
T ss_pred hhhhcchhhcchhhhhhcChhhhhhEEEEEEeccccceeEeeccc-----------hhhhccCCcEEEechhhcCC----
Confidence 22222111 011111100000 00 00000 012222221 11235678899999999764
Q ss_pred chHHHHHHHhcCCCCcEEEEeccCc
Q 002040 635 EPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 635 ~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
.+.+..++ .+.+++|+.|+.
T Consensus 393 Lplvk~Li-----gPylVfmaSTin 412 (1011)
T KOG2036|consen 393 LPLVKKLI-----GPYLVFMASTIN 412 (1011)
T ss_pred HHHHHHhh-----cceeEEEeeccc
Confidence 55565554 345788999874
No 308
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.19 E-value=0.86 Score=50.71 Aligned_cols=133 Identities=19% Similarity=0.232 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE-ccC-HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM-APT-RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl-~Pt-r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
+.-++++|++|+|||+.+...+. .+.. .+..|+++ +.+ +..+. ..+..++...++.++....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~-~l~~-------~g~~V~Li~~D~~r~~a~---eql~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH-KYKA-------QGKKVLLAAGDTFRAAAI---EQLQVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH-HHHh-------cCCeEEEEecCccchhhH---HHHHHHHHHcCceEEEeCCCCCHH
Confidence 44577889999999986443332 2222 23445554 444 33332 223333444555544332222111
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHHHHHHHh------cCCCCcEEEE
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQITRIVQN------IRPDRQTVLF 654 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i~~il~~------~~~~~q~i~~ 654 (976)
. ...+.+.. .....+++||||=+-++.... ....+..+... ..+..-++++
T Consensus 183 ~-----------------~v~~~l~~-----~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl 240 (318)
T PRK10416 183 S-----------------VAFDAIQA-----AKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVL 240 (318)
T ss_pred H-----------------HHHHHHHH-----HHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEE
Confidence 0 01111111 122457888888887653221 12233333332 2344457889
Q ss_pred eccCcHHHHHHHHHH
Q 002040 655 SATFPRQVEILARKV 669 (976)
Q Consensus 655 SAT~~~~~~~l~~~~ 669 (976)
+||........+..+
T Consensus 241 ~a~~g~~~~~~a~~f 255 (318)
T PRK10416 241 DATTGQNALSQAKAF 255 (318)
T ss_pred ECCCChHHHHHHHHH
Confidence 999765443344444
No 309
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.18 E-value=0.12 Score=59.97 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=15.4
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~i 525 (976)
+|++||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7999999999998755443
No 310
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.4 Score=58.02 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=24.3
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
+..+.+|||||+|.|....| ..+..++...+....+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 34678999999997653222 33455555545555555544
No 311
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.13 E-value=0.63 Score=47.30 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=76.9
Q ss_pred hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
+....+++...+|.|||.+++--++..+- .|.+|+|+-=.+--. -+.+...+....++.+.. .|.+..
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g--------~G~~V~ivQFlKg~~--~~GE~~~l~~l~~v~~~~--~g~~~~ 87 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVG--------HGKKVGVVQFIKGAW--STGERNLLEFGGGVEFHV--MGTGFT 87 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHH--------CCCeEEEEEEecCCC--ccCHHHHHhcCCCcEEEE--CCCCCc
Confidence 45568899999999999987777776643 366777765222110 011222221111333322 122110
Q ss_pred HHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCc--hHHHHHHHhcCCCCcEEEEeccCc
Q 002040 582 QQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 582 ~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~--~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
-. ......-+......+.... ....-..+++|||||+-..++.++. ..+..++...++..-+|++.-.+|
T Consensus 88 ~~----~~~~~e~~~~~~~~~~~a~----~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 88 WE----TQDRERDIAAAREGWEEAK----RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred cc----CCCcHHHHHHHHHHHHHHH----HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 00 0000000000001111111 1122356899999999988888865 356777777666666777767788
Q ss_pred HHHHHHHHH
Q 002040 660 RQVEILARK 668 (976)
Q Consensus 660 ~~~~~l~~~ 668 (976)
+.+..++..
T Consensus 160 ~~Lie~ADl 168 (191)
T PRK05986 160 RELIEAADL 168 (191)
T ss_pred HHHHHhCch
Confidence 877665543
No 312
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.09 E-value=0.29 Score=56.51 Aligned_cols=26 Identities=19% Similarity=0.369 Sum_probs=19.3
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
.+++|.|++|+|||.+ +..++..+..
T Consensus 56 ~~~lI~G~~GtGKT~l-~~~v~~~l~~ 81 (394)
T PRK00411 56 LNVLIYGPPGTGKTTT-VKKVFEELEE 81 (394)
T ss_pred CeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 5799999999999986 4445555443
No 313
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=94.03 E-value=0.078 Score=66.17 Aligned_cols=96 Identities=23% Similarity=0.200 Sum_probs=78.8
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (976)
..++|||+.-....+.+...|...++.+...-++ .+-...+..|++ --.+||-+...+-|+|+-++.+|+..+|-.
T Consensus 1221 qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t---~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiL 1296 (1394)
T KOG0298|consen 1221 QEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET---EDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLVEPIL 1296 (1394)
T ss_pred CceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC---cchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhheecccc
Confidence 3589999999998888888887777776655443 334556777776 445778899999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCccE
Q 002040 794 HYEDYVHRVGRTGRAGRKGC 813 (976)
Q Consensus 794 s~~~y~Qr~GR~gR~g~~g~ 813 (976)
++..-.|.+||++|.|++--
T Consensus 1297 N~~~E~QAigRvhRiGQ~~p 1316 (1394)
T KOG0298|consen 1297 NPGDEAQAIGRVHRIGQKRP 1316 (1394)
T ss_pred CchHHHhhhhhhhhcccccc
Confidence 99999999999999998643
No 314
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.03 E-value=0.43 Score=54.11 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=19.3
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
.++++.|+||+|||.+ +..++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~-~~~v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTAT-VKFVMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHH-HHHHHHHHHh
Confidence 3699999999999976 4455555554
No 315
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.00 E-value=0.32 Score=51.54 Aligned_cols=51 Identities=8% Similarity=0.054 Sum_probs=30.7
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
.|.-+++.|++|+|||+.++..+...+. .+..+++++.. +-..++...+..
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~--------~g~~~~yi~~e-~~~~~~~~~~~~ 73 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ--------NGYSVSYVSTQ-LTTTEFIKQMMS 73 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--------CCCcEEEEeCC-CCHHHHHHHHHH
Confidence 4667899999999999864444443322 24567777743 223444444433
No 316
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.99 E-value=0.3 Score=57.50 Aligned_cols=61 Identities=23% Similarity=0.311 Sum_probs=32.0
Q ss_pred cccccccCC-CCHHHHHHHHH--cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 465 PIKTWHQTG-LTSKIMETIRK--LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 465 pi~~~~~~~-l~~~l~~~l~~--~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
|-.+|.+++ +...+...... +.+..|.-+....++ ..+.+|+.||+|+|||+. +-.+...+
T Consensus 177 p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~---~p~GILLyGPPGTGKT~L-AKAlA~eL 240 (512)
T TIGR03689 177 PDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLK---PPKGVLLYGPPGCGKTLI-AKAVANSL 240 (512)
T ss_pred CCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCC---CCcceEEECCCCCcHHHH-HHHHHHhh
Confidence 346788876 44443322221 222222222222221 246799999999999975 33444443
No 317
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.35 Score=56.70 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=16.8
Q ss_pred CCEEEEcCCCCchHHHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~i 525 (976)
+.+|++||.|+|||+++.+.+
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 368999999999998755443
No 318
>PRK04195 replication factor C large subunit; Provisional
Probab=93.94 E-value=0.3 Score=57.92 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
.+.+|+.||+|+|||..+
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999753
No 319
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.92 E-value=0.26 Score=53.82 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.7
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.+|++||.|+|||..+-
T Consensus 164 SmIlWGppG~GKTtlAr 180 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLAR 180 (554)
T ss_pred ceEEecCCCCchHHHHH
Confidence 69999999999997543
No 320
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.89 E-value=0.13 Score=56.10 Aligned_cols=40 Identities=28% Similarity=0.122 Sum_probs=26.2
Q ss_pred hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
..|.-+++.|++|+|||+..+..+...+.. .+..|+++.-
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEc
Confidence 356778999999999997655444443322 2456777663
No 321
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.88 E-value=0.16 Score=50.80 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=40.1
Q ss_pred CCceEEEecCcccccccCCch--HHHHHHHhcCCCCcEEEEeccCcHHHHHHHH
Q 002040 616 RRVTYLVMDEADRMFDMGFEP--QITRIVQNIRPDRQTVLFSATFPRQVEILAR 667 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~--~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~ 667 (976)
..+++|||||+-..++.++.+ .+..++...++...+|++.-.+|+.+..++.
T Consensus 96 ~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 568999999999888887553 5677787777777778777778888766554
No 322
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.80 E-value=0.14 Score=53.77 Aligned_cols=48 Identities=17% Similarity=0.315 Sum_probs=30.0
Q ss_pred cCCceEEEecCcccccccC-CchHHHHHHHhcC-CCCcEEEEeccCcHHH
Q 002040 615 LRRVTYLVMDEADRMFDMG-FEPQITRIVQNIR-PDRQTVLFSATFPRQV 662 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~-f~~~i~~il~~~~-~~~q~i~~SAT~~~~~ 662 (976)
+..+++||||.+|.+.... ....+..++..+. .+.++|+.|...|..+
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4468999999999876432 2334555555553 3456777776766553
No 323
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.77 E-value=0.25 Score=58.64 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
..+.++||||||.|....| ..+..++...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 3578999999998764433 34445666655555555544
No 324
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.75 E-value=0.45 Score=55.32 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.+|+.||+|+|||+.+.
T Consensus 38 ~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 38 SMILWGPPGTGKTTLAR 54 (413)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 68999999999997643
No 325
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.2 Score=58.31 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=34.6
Q ss_pred CcccccccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~ 521 (976)
-|-.+|.+.|--..+...|.- ..+..|--++.-.|. .-..+|+|||+|+|||+.+
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~---~PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGID---APSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCC---CCCceEEeCCCCccHHHHH
Confidence 356789999877777655542 233333333322221 2457999999999999853
No 326
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.73 E-value=0.33 Score=57.35 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=16.2
Q ss_pred CEEEEcCCCCchHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~i 525 (976)
.+|++||.|+|||+++.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999998755443
No 327
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=93.73 E-value=0.98 Score=48.99 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=22.3
Q ss_pred CcHHHHHHHHHHh----cCC-CEEEEcCCCCchHHHHH
Q 002040 490 PMPIQAQALPVIM----SGR-DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 490 p~~~Q~~~i~~il----~g~-d~i~~a~TGsGKT~~~~ 522 (976)
+++.+.+++..+. .+. .++++|++|+|||+.+.
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4555566665543 333 57889999999998633
No 328
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.71 E-value=0.19 Score=47.68 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=12.5
Q ss_pred EEEEcCCCCchHHH
Q 002040 507 CIGVAKTGSGKTLA 520 (976)
Q Consensus 507 ~i~~a~TGsGKT~~ 520 (976)
+|+.||+|+|||..
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999975
No 329
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.62 E-value=0.23 Score=62.99 Aligned_cols=93 Identities=12% Similarity=0.162 Sum_probs=72.3
Q ss_pred CcchHHHHH-HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEe
Q 002040 696 PESDRFLRL-LELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (976)
Q Consensus 696 ~~~~k~~~l-~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa 770 (976)
....|.... ..++.....+.+++|.+||..-|.+.+..|... ++.+..++|..+..++..++..+.+|.++|||+
T Consensus 481 TGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIG 560 (926)
T TIGR00580 481 VGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIG 560 (926)
T ss_pred CCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEc
Confidence 344554433 233333345678999999999999988877653 677889999999999999999999999999999
Q ss_pred cC-cccccCCCCCCcEEEE
Q 002040 771 TS-VAARGLDVKELELVIN 788 (976)
Q Consensus 771 T~-v~~~GlDi~~v~~VI~ 788 (976)
|. .+...+.+.++.+||.
T Consensus 561 Tp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 561 THKLLQKDVKFKDLGLLII 579 (926)
T ss_pred hHHHhhCCCCcccCCEEEe
Confidence 97 4445678888998885
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.59 E-value=0.22 Score=53.15 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=34.4
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
|..++|.|++|+|||+.++..++..+.. |..+++++ +-+-..|+.+.+..+
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs-~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVA-LEEHPVQVRRNMAQF 71 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEE-eeCCHHHHHHHHHHh
Confidence 4678999999999998766666655532 45677776 344555666655543
No 331
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.54 E-value=0.31 Score=58.83 Aligned_cols=41 Identities=10% Similarity=0.159 Sum_probs=25.5
Q ss_pred ccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 614 ~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
.+..+.+|||||+|.|.... ...+...+...++...+|+.+
T Consensus 129 ~~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 129 VSARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hcCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 34568899999999875432 234445555555555555544
No 332
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.52 E-value=0.25 Score=54.81 Aligned_cols=58 Identities=22% Similarity=0.186 Sum_probs=38.8
Q ss_pred CcHHHHHHHHHHh-cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 490 PMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 490 p~~~Q~~~i~~il-~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
+++.|...|..++ .+.++|++|+||||||+. +-.++..+...+ .+-+++++=.+.+|.
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 4567776665554 567899999999999975 455666554322 133567777777763
No 333
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.51 E-value=0.39 Score=58.71 Aligned_cols=94 Identities=21% Similarity=0.157 Sum_probs=77.0
Q ss_pred cchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHC-C-CCceeccCCCCHHHHHHHHHHhccCCccEEEecCc
Q 002040 697 ESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKH-G-YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~-~-~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v 773 (976)
.+.|...++.++..... ++++||.++.+..+..+...|... | ..+..+|++++..+|...+....+|..+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 35777777887777665 458999999999999999999864 4 67999999999999999999999999999999975
Q ss_pred ccccCCCCCCcEEEEeCC
Q 002040 774 AARGLDVKELELVINFDA 791 (976)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~ 791 (976)
+-- +-++++.+||..+-
T Consensus 250 AvF-aP~~~LgLIIvdEE 266 (665)
T PRK14873 250 AVF-APVEDLGLVAIWDD 266 (665)
T ss_pred eEE-eccCCCCEEEEEcC
Confidence 442 45667788876443
No 334
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.49 E-value=0.19 Score=55.36 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
+.+|++||+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6799999999999975
No 335
>PLN03025 replication factor C subunit; Provisional
Probab=93.47 E-value=0.55 Score=52.50 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=22.6
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
.+.+|||||||.|.... ...+..++........+ +|+++
T Consensus 99 ~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~-il~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRF-ALACN 137 (319)
T ss_pred CeEEEEEechhhcCHHH-HHHHHHHHhcccCCceE-EEEeC
Confidence 47899999999875432 23344445544444444 44444
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.44 E-value=0.46 Score=58.70 Aligned_cols=40 Identities=23% Similarity=0.283 Sum_probs=24.0
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHH
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~ 661 (976)
...+|||||+|++.. .+...++..+ ...++++++||.++.
T Consensus 109 ~~~IL~IDEIh~Ln~----~qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNK----AQQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCH----HHHHHHHHHh-cCceEEEEEecCCCh
Confidence 457899999998642 2222333333 235677878775443
No 337
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.39 E-value=0.25 Score=52.83 Aligned_cols=46 Identities=24% Similarity=0.203 Sum_probs=28.9
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc---cCHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQ 555 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~---Ptr~La~Q 555 (976)
.|.-++|.|++|+|||...+..++..+.. .+..+++++ |..+++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-------~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-------QGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCceEEEeCCCCHHHHHHH
Confidence 45668889999999997644444444432 145677777 33444443
No 338
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.37 E-value=0.53 Score=58.33 Aligned_cols=38 Identities=11% Similarity=0.117 Sum_probs=22.5
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEE
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 654 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~ 654 (976)
..+.+|||||||+|.... ...+.+++..-+....+|+.
T Consensus 118 gk~KViIIDEAh~LT~eA-qNALLKtLEEPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSS-FNALLKTLEEPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhccCCCeEEEEE
Confidence 357899999999875332 23444455554444444443
No 339
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.33 E-value=0.16 Score=60.94 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=49.6
Q ss_pred CCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHH-HHHHHHHh
Q 002040 489 KPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH-SDIRKFAK 565 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~-~~~~~~~~ 565 (976)
..+|+|.+.+..+... +.|+++.++-+|||.+.+..+...+... ...+|++.||..+|..+. ..|..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQD-------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeC-------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5689999998888754 5788899999999996444443333322 234799999999998876 44444443
No 340
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=93.32 E-value=0.41 Score=51.35 Aligned_cols=39 Identities=18% Similarity=0.247 Sum_probs=23.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~ 551 (976)
.+|.|||||||+- ++-.++..-+-+ ...-.|++|+|+..
T Consensus 90 ~~VYGPTG~GKSq-LlRNLis~~lI~-----P~PETVfFItP~~~ 128 (369)
T PF02456_consen 90 GVVYGPTGSGKSQ-LLRNLISCQLIQ-----PPPETVFFITPQKD 128 (369)
T ss_pred EEEECCCCCCHHH-HHHHhhhcCccc-----CCCCceEEECCCCC
Confidence 5677999999994 333333221111 12336899999864
No 341
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.17 E-value=0.48 Score=56.45 Aligned_cols=136 Identities=18% Similarity=0.183 Sum_probs=79.4
Q ss_pred hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc-CcEEE-EeeCCCC
Q 002040 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCV-PVYGGSG 579 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~-~~~~~-~~~gg~~ 579 (976)
+..+-.++..|=-.|||.... +++..+... -.|-.+++++|....+..++.++..++..+ +-..+ .+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 345667888888899998644 555544432 136789999999999999999999876543 11112 2222 21
Q ss_pred hHHHHHHHhcC--CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhc-CCCCcEEEEec
Q 002040 580 VAQQISELKRG--TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSA 656 (976)
Q Consensus 580 ~~~~~~~l~~~--~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~-~~~~q~i~~SA 656 (976)
+ .-.+..| .-|.++|- .+. ....-..+++||||||+-+-.. .+..++-.+ ..+.++|++|.
T Consensus 325 I---~i~f~nG~kstI~FaSa--------rnt-NsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS 388 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASS--------HNT-NGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSS 388 (738)
T ss_pred E---EEEecCCCccEEEEEec--------cCC-CCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEec
Confidence 1 0011222 24444421 110 0011236889999999966532 333333222 23788999998
Q ss_pred cCcH
Q 002040 657 TFPR 660 (976)
Q Consensus 657 T~~~ 660 (976)
|-+.
T Consensus 389 ~Ns~ 392 (738)
T PHA03368 389 TNTG 392 (738)
T ss_pred CCCC
Confidence 8654
No 342
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.14 E-value=0.65 Score=52.94 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEE
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLF 654 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~ 654 (976)
....+|||||||.|....+ ..+...+...++...+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4578999999998754322 2234444444444444443
No 343
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.09 E-value=0.27 Score=54.62 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=41.3
Q ss_pred HHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHH
Q 002040 481 TIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (976)
Q Consensus 481 ~l~~~~~~~p~~~Q~~~i~~-il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~L 552 (976)
.|...|+ +++.|...|.. +..+.+++++|+||||||+. +..++..+...+ ...++++|-.+.+|
T Consensus 126 ~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 126 QYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTTL-VNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred HHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 3444454 45677777765 44678899999999999964 555555443211 23466777777776
No 344
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.06 E-value=0.13 Score=58.10 Aligned_cols=133 Identities=18% Similarity=0.139 Sum_probs=72.9
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc--
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-- 567 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~-- 567 (976)
+-..|..+.-.+-.|.- .|.|-.|||||.+.++-+. +|... +..-+++|.+-|+.|+.++...+.+|+-..
T Consensus 163 fD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa-~lh~k-----nPd~~I~~Tfftk~L~s~~r~lv~~F~f~~~e 235 (660)
T COG3972 163 FDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAA-ELHSK-----NPDSRIAFTFFTKILASTMRTLVPEFFFMRVE 235 (660)
T ss_pred ccchhheeeeecCCchh-hhhcccCCCchhHHHHHHH-HHhcC-----CCCceEEEEeehHHHHHHHHHHHHHHHHHHhh
Confidence 44567766655555554 6678899999987544433 33322 224578999999999999998888887322
Q ss_pred -----C-cEEEEeeCCCChHHHHHHHh---cCCeEEEeCchhHHHHHHhcC-CcccccCCceEEEecCcccc
Q 002040 568 -----G-VRCVPVYGGSGVAQQISELK---RGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRM 629 (976)
Q Consensus 568 -----~-~~~~~~~gg~~~~~~~~~l~---~~~~Iiv~Tp~~L~~~l~~~~-~~~~~l~~~~~vVlDEah~~ 629 (976)
+ +.+..-.||....-...... .-..|-++--|.-.+..+..- ....++.-+++|.|||++-+
T Consensus 236 ~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~~~~~~~yD~ilIDE~QDF 307 (660)
T COG3972 236 KQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIADINNKKAYDYILIDESQDF 307 (660)
T ss_pred cCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHhhhccccccEEEecccccC
Confidence 2 23333445554322211111 111222221111111111100 00123567899999999954
No 345
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.02 E-value=1.2 Score=50.41 Aligned_cols=131 Identities=20% Similarity=0.250 Sum_probs=76.3
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc-c-CHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~-P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 583 (976)
-++++|=-|||||+++.- +..++.+. +.++++++ - .|..|. ++++.++...++.+.....+.+.- .
T Consensus 102 vImmvGLQGsGKTTt~~K-LA~~lkk~-------~~kvllVaaD~~RpAA~---eQL~~La~q~~v~~f~~~~~~~Pv-~ 169 (451)
T COG0541 102 VILMVGLQGSGKTTTAGK-LAKYLKKK-------GKKVLLVAADTYRPAAI---EQLKQLAEQVGVPFFGSGTEKDPV-E 169 (451)
T ss_pred EEEEEeccCCChHhHHHH-HHHHHHHc-------CCceEEEecccCChHHH---HHHHHHHHHcCCceecCCCCCCHH-H
Confidence 378889999999987443 34444432 44555555 3 344443 667777777787776552222111 1
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccc-ccCCchHHHHHHHhcCCCCcEEEEeccCcHHH
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~-~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~ 662 (976)
+.. .-+.. .....+++||||=|-|+- +...-..+..|-..++|+--++++-|++....
T Consensus 170 Iak----------------~al~~-----ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA 228 (451)
T COG0541 170 IAK----------------AALEK-----AKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDA 228 (451)
T ss_pred HHH----------------HHHHH-----HHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHH
Confidence 110 11111 123346778888777542 22234456667777888887888888887766
Q ss_pred HHHHHHH
Q 002040 663 EILARKV 669 (976)
Q Consensus 663 ~~l~~~~ 669 (976)
...+..|
T Consensus 229 ~~~A~aF 235 (451)
T COG0541 229 VNTAKAF 235 (451)
T ss_pred HHHHHHH
Confidence 6666555
No 346
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.99 E-value=0.57 Score=53.19 Aligned_cols=43 Identities=14% Similarity=0.127 Sum_probs=26.3
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
...+.+|||||+|.|-. .-...+.+++...++...+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~-~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNA-NAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCH-HHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 45678999999998742 22334555555544455555555543
No 347
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.96 E-value=1.2 Score=50.43 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=27.4
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhc-CCCCcEEEEeccCcHH
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQ 661 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~ 661 (976)
...+|++||+|- .|-+-...+..++..+ ....-+|++|-++|..
T Consensus 127 ~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 127 ESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred cCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 467999999993 3333334445555544 3455667777777765
No 348
>PHA00729 NTP-binding motif containing protein
Probab=92.93 E-value=0.68 Score=48.41 Aligned_cols=75 Identities=15% Similarity=0.217 Sum_probs=38.3
Q ss_pred CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc-CCc----hHHHHHHHhcCCCCcEEEEeccCcHHHHHH
Q 002040 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFE----PQITRIVQNIRPDRQTVLFSATFPRQVEIL 665 (976)
Q Consensus 591 ~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~-~f~----~~i~~il~~~~~~~q~i~~SAT~~~~~~~l 665 (976)
...++.+...|+..+.... .....+.+||||++=.-+.. .|. ..+..+...+++..+++.|...-|..+...
T Consensus 59 ~~~~fid~~~Ll~~L~~a~---~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~ 135 (226)
T PHA00729 59 QNSYFFELPDALEKIQDAI---DNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFY 135 (226)
T ss_pred CcEEEEEHHHHHHHHHHHH---hcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHH
Confidence 3455555555555553211 11234578999994311111 011 223345555555566777777766666555
Q ss_pred HHH
Q 002040 666 ARK 668 (976)
Q Consensus 666 ~~~ 668 (976)
+..
T Consensus 136 Lr~ 138 (226)
T PHA00729 136 LRE 138 (226)
T ss_pred HHh
Confidence 554
No 349
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.93 E-value=0.61 Score=53.87 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=15.9
Q ss_pred CEEEEcCCCCchHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~i 525 (976)
.+|++||.|+|||+++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998755443
No 350
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.92 E-value=0.66 Score=55.80 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=25.5
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCc
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
...+.+|||||||.|....| ..+..++...+...-+|+.+ |-+
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~-NALLK~LEEpp~~~~fIL~t-te~ 158 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGF-NALLKIVEEPPEHLIFIFAT-TEP 158 (584)
T ss_pred cCCceEEEEECCCcCCHHHH-HHHHHHHhcCCCCeEEEEEe-CCh
Confidence 35688999999998764432 23445555544444444444 543
No 351
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.90 E-value=0.46 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=18.9
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
.+++|.||+|+|||.+ +..++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHH
Confidence 5799999999999976 445555554
No 352
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=92.90 E-value=0.48 Score=47.23 Aligned_cols=43 Identities=12% Similarity=0.267 Sum_probs=28.2
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCc
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
..+.++|||+||.|... -...+.+++..-+.+..+|++|..+.
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~ 143 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPS 143 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChH
Confidence 56889999999987533 34556666666666666666665543
No 353
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=0.43 Score=57.37 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=16.2
Q ss_pred CEEEEcCCCCchHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~i 525 (976)
.+|+.|+.|+|||+++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57889999999998765544
No 354
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=92.89 E-value=0.2 Score=50.64 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=23.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
.++.|||+||||..++.-+.+. .. .+.+++++-|.
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~-~~-------~~~~v~~~kp~ 38 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRY-EI-------AGKKVLVFKPA 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-HH-------TT-EEEEEEES
T ss_pred EEEECCcCChhHHHHHHHHHHH-Hh-------CCCeEEEEEec
Confidence 5788999999998754444333 22 25678898885
No 355
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=92.87 E-value=0.8 Score=45.84 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=33.3
Q ss_pred cCCceEEEecCcccccccCCch--HHHHHHHhcCCCCcEEEEeccCcHHHHHHH
Q 002040 615 LRRVTYLVMDEADRMFDMGFEP--QITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~--~i~~il~~~~~~~q~i~~SAT~~~~~~~l~ 666 (976)
-..+++|||||+-..++.++.. .+..++...++..-+|++.-.+|+.+..++
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~A 147 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAA 147 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhC
Confidence 3568999999999888888654 466777777677777777777887766554
No 356
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=0.23 Score=59.93 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=15.5
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~i 525 (976)
+|++|+.|+|||+++.+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lA 59 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILA 59 (618)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999998755543
No 357
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.78 E-value=0.43 Score=54.24 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=32.5
Q ss_pred CceEEEecCccccccc-CCchHHHHHHHhcCCCC-cEEEEeccCcHHHH
Q 002040 617 RVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDR-QTVLFSATFPRQVE 663 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~-~f~~~i~~il~~~~~~~-q~i~~SAT~~~~~~ 663 (976)
++++|+||.++.+... .....+..+++.+.... |+|+.|..+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 5889999999977654 23455666677665543 77777777777654
No 358
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=92.77 E-value=0.32 Score=55.82 Aligned_cols=54 Identities=22% Similarity=0.246 Sum_probs=31.1
Q ss_pred cccccccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~ 521 (976)
|-.+|.+.+-.....+.|.. +.+..|.-++.-.+ ...+.+++.||+|+|||+.+
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 44567777665555544443 22332222222211 23578999999999999853
No 359
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.66 Score=55.29 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=24.3
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
.....+|||||||+|.... ...+..++...+....+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a-~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQS-FNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHH-HHHHHHHHhcCCCCceEEEEE
Confidence 3467899999999875433 234445555544444445444
No 360
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=92.66 E-value=0.23 Score=51.06 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=24.4
Q ss_pred CceEEEecCcccccccCCc-----hHHHHHHHhcCCC-CcEEEEeccCcHHHHHHHH
Q 002040 617 RVTYLVMDEADRMFDMGFE-----PQITRIVQNIRPD-RQTVLFSATFPRQVEILAR 667 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~-----~~i~~il~~~~~~-~q~i~~SAT~~~~~~~l~~ 667 (976)
.-++|||||||.+++.... +.+...+...+.. ..++++|-.+ ..+...++
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~-~~id~~ir 134 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSP-SQIDKFIR 134 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-G-GGB-HHHH
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCH-HHHhHHHH
Confidence 4579999999987765433 2233444444443 4455555554 34443333
No 361
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.65 E-value=0.71 Score=49.92 Aligned_cols=37 Identities=14% Similarity=0.037 Sum_probs=25.3
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
.|.-++|.|++|+|||+..+..+.+.+. .|..+++++
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~--------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQAS--------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh--------CCCcEEEEE
Confidence 3456889999999999865554454432 245677776
No 362
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=92.65 E-value=0.22 Score=57.13 Aligned_cols=44 Identities=23% Similarity=0.373 Sum_probs=25.9
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
...+.++||||||+|.... ...+..++..-++.. ++++++|-+.
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~ 158 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPE 158 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChH
Confidence 3467899999999985432 234555555544444 4445555333
No 363
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=92.63 E-value=0.3 Score=51.95 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=20.1
Q ss_pred CchhHHHHHHhcCCcccccCCceEEEecCccccc
Q 002040 597 TPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF 630 (976)
Q Consensus 597 Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~ 630 (976)
-|+-|..+| ++|..-+++.|||+|++.
T Consensus 90 K~gDlaaiL-------t~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 90 KPGDLAAIL-------TNLEEGDVLFIDEIHRLS 116 (332)
T ss_pred ChhhHHHHH-------hcCCcCCeEEEehhhhcC
Confidence 455566666 467777899999999974
No 364
>CHL00181 cbbX CbbX; Provisional
Probab=92.61 E-value=0.89 Score=49.91 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=16.7
Q ss_pred CCCEEEEcCCCCchHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~ 524 (976)
+.++++.|++|+|||+++...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999875443
No 365
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.58 E-value=0.8 Score=54.75 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=24.3
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
...+.++||||+|.|....+ ..+...+...+....+|+.|
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 34678999999998764332 23444555544455455544
No 366
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=92.56 E-value=0.28 Score=51.80 Aligned_cols=51 Identities=20% Similarity=0.235 Sum_probs=32.2
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
|..+++.|++|+|||+..+..+.+.+... |..|++++- .+-..++.+.+..
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s 69 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKS 69 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHT
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHH
Confidence 45789999999999987666666665540 335677663 3334555555554
No 367
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.47 E-value=0.75 Score=51.97 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=25.8
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEec
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SA 656 (976)
...+.+|||||||.|.... ...+..++...+....+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 3467899999999875332 3445566666444555555553
No 368
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.47 E-value=0.72 Score=51.70 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHhc--C---CCEEEEcCCCCchHHHHHHHH
Q 002040 491 MPIQAQALPVIMS--G---RDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 491 ~~~Q~~~i~~il~--g---~d~i~~a~TGsGKT~~~~l~i 525 (976)
+|+|...+..+.. + +-+|+.|+.|.|||..+...+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 5777777777664 2 358899999999998654444
No 369
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.37 E-value=0.54 Score=56.88 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=25.1
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCc
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFP 659 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~ 659 (976)
...+.++||||+|.|.... ...+..++..-++...+|+ .+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl-~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIF-ATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEE-EeCCh
Confidence 4568899999999775332 2344555555444444444 44533
No 370
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.20 E-value=0.59 Score=55.41 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=16.7
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHh
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
+|++||.|+|||+++.+ +...+.
T Consensus 39 ~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHHH-HHHHHh
Confidence 59999999999987543 344443
No 371
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.18 E-value=0.68 Score=54.18 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=31.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
|.-+++.|++|+|||+..+..+.... . .+.++|++.- .+-..|+...+..
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a-~-------~g~~vlYvs~-Ees~~qi~~ra~r 129 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA-A-------AGGKVLYVSG-EESASQIKLRAER 129 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-h-------cCCeEEEEEc-cccHHHHHHHHHH
Confidence 45678899999999986544444332 2 2456778774 3444566554444
No 372
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.13 E-value=0.51 Score=52.07 Aligned_cols=64 Identities=25% Similarity=0.253 Sum_probs=40.0
Q ss_pred HHHcCCCCCcHHHHHHHHHH-hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 482 IRKLNYEKPMPIQAQALPVI-MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 482 l~~~~~~~p~~~Q~~~i~~i-l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
|...|. +++.|...|..+ ..+.++|++|+||||||+. +-.++..+...+ ...+++++-.+.+|.
T Consensus 111 l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 111 YVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 344443 345555555544 4567899999999999975 455555544321 134577777777763
No 373
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.10 E-value=0.49 Score=56.97 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.3
Q ss_pred CCEEEEcCCCCchHHHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~i 525 (976)
+-+|++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999998755444
No 374
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.09 E-value=0.26 Score=59.71 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=38.0
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
..-|+|||.-|++.+...-..+..++.+.+++.++|+.|-+-|+
T Consensus 129 ~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 129 GPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred CceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 34699999999999888788899999999999999999987554
No 375
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=92.08 E-value=0.84 Score=45.71 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=38.9
Q ss_pred CceEEEecCcccccccCCch--HHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHH
Q 002040 617 RVTYLVMDEADRMFDMGFEP--QITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~--~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~ 669 (976)
.+++||+||.--.+..++.+ .+..++...+....+|++.-..|+.+..++...
T Consensus 122 ~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADlV 176 (198)
T COG2109 122 KYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADLV 176 (198)
T ss_pred CCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 58999999999888888654 466677766666666666666888877666543
No 376
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.06 E-value=1.1 Score=55.85 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=27.0
Q ss_pred ceEEEecCcccccccCC----chHHHHHHHhcCCCCcEEEEeccCcHHH
Q 002040 618 VTYLVMDEADRMFDMGF----EPQITRIVQNIRPDRQTVLFSATFPRQV 662 (976)
Q Consensus 618 ~~~vVlDEah~~~~~~f----~~~i~~il~~~~~~~q~i~~SAT~~~~~ 662 (976)
..+|+|||+|.++..+- ...+..++..+-....+.++.||-++..
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 35899999998876542 1223344444433455677777765553
No 377
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=91.99 E-value=1 Score=50.20 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=26.2
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
...+.++|||+||.|... -...+.+++..-++...+|++|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 356789999999988533 244555666664555544444443
No 378
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=91.96 E-value=1.3 Score=49.63 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=26.4
Q ss_pred cHHHHHHHHHHhcC-----CCEEEEcCCCCchHHHHHHHHH
Q 002040 491 MPIQAQALPVIMSG-----RDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 491 ~~~Q~~~i~~il~g-----~d~i~~a~TGsGKT~~~~l~il 526 (976)
+|+|...|..+... ..+|+.||.|+|||..+...+-
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 57788888777632 2488999999999987554443
No 379
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.95 E-value=1 Score=53.00 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.8
Q ss_pred CEEEEcCCCCchHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l 523 (976)
.+|++||+|+|||+.+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 379999999999986544
No 380
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.91 E-value=0.72 Score=55.17 Aligned_cols=21 Identities=24% Similarity=0.094 Sum_probs=16.2
Q ss_pred CCEEEEcCCCCchHHHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~i 525 (976)
+.+|+.||.|+|||..+.+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358899999999998754433
No 381
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.89 E-value=0.19 Score=59.68 Aligned_cols=80 Identities=18% Similarity=0.270 Sum_probs=59.6
Q ss_pred HHHhccCCccEEEecCcccccCCCCCCcEEE--------EeCCCCCHHHHHHHhcccCCCCCc-cEEEEEecC---CCcC
Q 002040 757 ISDFKSNVCNLLIATSVAARGLDVKELELVI--------NFDAPNHYEDYVHRVGRTGRAGRK-GCAITFISE---EDAK 824 (976)
Q Consensus 757 ~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI--------~~d~p~s~~~y~Qr~GR~gR~g~~-g~~~~~~~~---~d~~ 824 (976)
-+.|+.|...|-|-..+++-||-+..-..|+ -+.+||+....+|..||++|..+- +--|+|+.. .+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGErR 929 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGERR 929 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccchH
Confidence 4689999999999999999999998755554 488999999999999999998763 444555432 2445
Q ss_pred chHHHHHHHhhc
Q 002040 825 YSPDLVKALELS 836 (976)
Q Consensus 825 ~~~~i~~~l~~~ 836 (976)
++..+.+.|+.-
T Consensus 930 FAS~VAKRLESL 941 (1300)
T KOG1513|consen 930 FASIVAKRLESL 941 (1300)
T ss_pred HHHHHHHHHHhh
Confidence 555555555544
No 382
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.88 E-value=0.39 Score=52.75 Aligned_cols=60 Identities=22% Similarity=0.166 Sum_probs=42.2
Q ss_pred CCCCCcHHHHHHHHHHhcCC-CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHH
Q 002040 486 NYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (976)
Q Consensus 486 ~~~~p~~~Q~~~i~~il~g~-d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~ 554 (976)
.|...++-|...+-.+...+ ++|++|.||||||+. +-+++.++- ..-+++++--|.+|-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~--------~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL-LNALSGFID--------SDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCC--------CcccEEEEeehhhhcc
Confidence 45578889998888877665 999999999999974 222322211 2237788888877744
No 383
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=91.80 E-value=0.53 Score=52.62 Aligned_cols=26 Identities=19% Similarity=0.200 Sum_probs=18.7
Q ss_pred CC-EEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 505 RD-CIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 505 ~d-~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
.. +|+.||.|+|||.++. .+...+..
T Consensus 24 ~halL~~Gp~G~Gktt~a~-~lA~~l~~ 50 (325)
T COG0470 24 PHALLFYGPPGVGKTTAAL-ALAKELLC 50 (325)
T ss_pred CceeeeeCCCCCCHHHHHH-HHHHHHhC
Confidence 45 8999999999998744 44444443
No 384
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=2.5 Score=45.27 Aligned_cols=127 Identities=16% Similarity=0.261 Sum_probs=70.9
Q ss_pred HHHHhcCC-----CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEE
Q 002040 498 LPVIMSGR-----DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV 572 (976)
Q Consensus 498 i~~il~g~-----d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~ 572 (976)
+|.++.|+ .+|+.||+|+||+..+- ++..- ..-.++-+.+..|+..|.-+-.++.+.
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLAK--AVATE----------AnSTFFSvSSSDLvSKWmGESEkLVkn------ 216 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLAK--AVATE----------ANSTFFSVSSSDLVSKWMGESEKLVKN------ 216 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHHH--HHHhh----------cCCceEEeehHHHHHHHhccHHHHHHH------
Confidence 45666664 58999999999996432 22210 113577778888887776554443221
Q ss_pred EeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCC---chHHHHH----HHhc
Q 002040 573 PVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF---EPQITRI----VQNI 645 (976)
Q Consensus 573 ~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f---~~~i~~i----l~~~ 645 (976)
|..+.. -+..++|.|||+|.+....- .....+| +.++
T Consensus 217 ----------------------------LFemAR--------e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQM 260 (439)
T KOG0739|consen 217 ----------------------------LFEMAR--------ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQM 260 (439)
T ss_pred ----------------------------HHHHHH--------hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhh
Confidence 111211 12357899999997654321 1122222 2222
Q ss_pred ----CCCCcEEEEeccCcHHH-HHHHHHHcCCCeEEEe
Q 002040 646 ----RPDRQTVLFSATFPRQV-EILARKVLNKPVEIQV 678 (976)
Q Consensus 646 ----~~~~q~i~~SAT~~~~~-~~l~~~~l~~~~~i~~ 678 (976)
..+--+|++.||-.|++ ...++.-+...++|.+
T Consensus 261 qGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPL 298 (439)
T KOG0739|consen 261 QGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPL 298 (439)
T ss_pred hccccCCCceEEEecCCCchhHHHHHHHHhhcceeccC
Confidence 23346899999976654 4445555555554443
No 385
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=91.73 E-value=0.42 Score=58.90 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=53.0
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHC----C-CCcee-ccCCCCHHHHHHHHHHhccCCccEEEecCcc
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKH----G-YPCLS-LHGAKDQTDRESTISDFKSNVCNLLIATSVA 774 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~----~-~~~~~-lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~ 774 (976)
.+.+++|.+||..-+.++++.|.+. + +.+.. +||.|+..++..+++.|.+|.++|||+|+.+
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 4579999999999999999888765 2 44333 9999999999999999999999999999754
No 386
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.73 E-value=0.23 Score=58.49 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=35.8
Q ss_pred CCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 489 KPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 489 ~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
+|+.||.+.+..+. .|+-.|+-.|||+|||+..+..++.+|.
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~ 60 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLR 60 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHH
Confidence 68999999887765 6888999999999999998888777664
No 387
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.63 E-value=0.38 Score=51.13 Aligned_cols=87 Identities=14% Similarity=0.288 Sum_probs=60.7
Q ss_pred CCCceeccCCCCHHHHHHHHHHhccC----CccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccC-CCCCcc
Q 002040 738 GYPCLSLHGAKDQTDRESTISDFKSN----VCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTG-RAGRKG 812 (976)
Q Consensus 738 ~~~~~~lhg~~~~~~R~~~~~~F~~g----~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~g-R~g~~g 812 (976)
++.+..++++.+... -.|.++ ...|+|+-+.++|||+++++.+..+...+.+..++.|+.-=.| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455555665443322 223333 3789999999999999999999999999998888888653233 777788
Q ss_pred EEEEEecCCCcCchHHH
Q 002040 813 CAITFISEEDAKYSPDL 829 (976)
Q Consensus 813 ~~~~~~~~~d~~~~~~i 829 (976)
.|-+|+++.-...+..|
T Consensus 185 l~Ri~~~~~l~~~f~~i 201 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHI 201 (239)
T ss_pred ceEEecCHHHHHHHHHH
Confidence 99999876543333333
No 388
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=3.3 Score=47.81 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=40.6
Q ss_pred cCCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcC--------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCC
Q 002040 471 QTGLTSKIMETIRKLNYEKPMPIQAQALP----VIMSG--------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (976)
Q Consensus 471 ~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~----~il~g--------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~ 538 (976)
.+|.+...+..+...|.-.-.|.-.+.+. .+.+- ..+|+.||.|||||..++-.++. .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------S 562 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------S 562 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------c
Confidence 36777777776666555433333233322 22211 25899999999999765444331 2
Q ss_pred CCCeEEEEccC
Q 002040 539 DGPVGLIMAPT 549 (976)
Q Consensus 539 ~~~~vLIl~Pt 549 (976)
.-|.+=|+.|.
T Consensus 563 ~FPFvKiiSpe 573 (744)
T KOG0741|consen 563 DFPFVKIISPE 573 (744)
T ss_pred CCCeEEEeChH
Confidence 45777788884
No 389
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.60 E-value=0.59 Score=51.25 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=16.1
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+.++++.||+|+|||+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4579999999999998753
No 390
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.60 E-value=0.32 Score=56.08 Aligned_cols=46 Identities=26% Similarity=0.393 Sum_probs=31.6
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCC--EEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 482 IRKLNYEKPMPIQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 482 l~~~~~~~p~~~Q~~~i~~il~g~d--~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
|.++|+ ++.|...+..+++... +|+.||||||||++ +..++..+..
T Consensus 237 l~~Lg~---~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 237 LEKLGM---SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred HHHhCC---CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 344454 5788888888776543 56779999999986 5555655543
No 391
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=91.51 E-value=2.1 Score=53.69 Aligned_cols=21 Identities=24% Similarity=0.112 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCCchHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~ 524 (976)
..++|++|++|+|||..+-..
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~l 223 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGL 223 (731)
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 358999999999999864433
No 392
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.50 E-value=2 Score=52.19 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.1
Q ss_pred CEEEEcCCCCchHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~ 524 (976)
.+|+.|+.|+|||+++.+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999875443
No 393
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=91.49 E-value=0.38 Score=54.53 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=30.4
Q ss_pred ccCCceE-EEecCcccccccC---CchHHHHHHHhcCCC-CcEEEEeccC
Q 002040 614 NLRRVTY-LVMDEADRMFDMG---FEPQITRIVQNIRPD-RQTVLFSATF 658 (976)
Q Consensus 614 ~l~~~~~-vVlDEah~~~~~~---f~~~i~~il~~~~~~-~q~i~~SAT~ 658 (976)
++....+ +++||||.+|+.. +...|..++..++.. .-++++|-++
T Consensus 251 D~dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSKGVGv~fvTQ~P 300 (502)
T PF05872_consen 251 DLDKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSKGVGVYFVTQNP 300 (502)
T ss_pred CCCCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhccCceEEEEeCCC
Confidence 4555565 5699999888654 666777777777654 4456666664
No 394
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.41 E-value=0.18 Score=51.17 Aligned_cols=42 Identities=14% Similarity=0.357 Sum_probs=29.4
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCC-CcEEEEecc
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD-RQTVLFSAT 657 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~-~q~i~~SAT 657 (976)
....++|+||...-++......+..++..+... .++|+.|--
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~ 157 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLK 157 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 457899999999888776666666666655433 566666554
No 395
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=91.33 E-value=1.8 Score=49.20 Aligned_cols=145 Identities=17% Similarity=0.155 Sum_probs=61.8
Q ss_pred EEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHH-HH---HHHHHHHhh-cCcEEEEeeCCCChHH
Q 002040 508 IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ-IH---SDIRKFAKV-MGVRCVPVYGGSGVAQ 582 (976)
Q Consensus 508 i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q-~~---~~~~~~~~~-~~~~~~~~~gg~~~~~ 582 (976)
|+.++.|+|||.+.++.++.++...+. ...++++ ||..-+.. +. ..+..+... +.+...........
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKII-- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEEE--
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcEE--
Confidence 577899999999988888887776431 2345555 66544443 22 223333322 12222211111100
Q ss_pred HHHHHhcCCeEEEeCchh--HHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccC--
Q 002040 583 QISELKRGTEIVVCTPGR--MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF-- 658 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~--L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~-- 658 (976)
+..|..|.+++... -..-+. =..+++|||||+-.+.+..+...+...+..... ...+++|.|+
T Consensus 73 ----~~nG~~i~~~~~~~~~~~~~~~--------G~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~p~~~ 139 (384)
T PF03237_consen 73 ----LPNGSRIQFRGADSPDSGDNIR--------GFEYDLIIIDEAAKVPDDAFSELIRRLRATWGG-SIRMYISTPPNP 139 (384)
T ss_dssp ----ETTS-EEEEES-----SHHHHH--------TS--SEEEEESGGGSTTHHHHHHHHHHHHCSTT---EEEEEE---S
T ss_pred ----ecCceEEEEecccccccccccc--------ccccceeeeeecccCchHHHHHHHHhhhhcccC-cceEEeecCCCC
Confidence 13455666666332 111221 134789999998866443333333333222222 2222444443
Q ss_pred cHHHHHHHHHHcCCC
Q 002040 659 PRQVEILARKVLNKP 673 (976)
Q Consensus 659 ~~~~~~l~~~~l~~~ 673 (976)
...+..+........
T Consensus 140 ~~~~~~~~~~~~~~~ 154 (384)
T PF03237_consen 140 GGWFYEIFQRNLDDD 154 (384)
T ss_dssp SSHHHHHHHHHHCTS
T ss_pred CCceeeeeehhhcCC
Confidence 234444555555444
No 396
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=91.32 E-value=0.57 Score=53.07 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=20.6
Q ss_pred hcCCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
-.|+-++|+|++|+|||+. +..+...+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL-~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVL-LQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHH-HHHHHHhhc
Confidence 3688899999999999975 333444443
No 397
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.29 E-value=1.5 Score=46.49 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=30.9
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
|.-+++.|++|+|||+.++..++..+. ++..|+++.-- +-..++...+..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~--------~g~~~~y~~~e-~~~~~~~~~~~~ 74 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK--------QGKKVYVITTE-NTSKSYLKQMES 74 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh--------CCCEEEEEEcC-CCHHHHHHHHHH
Confidence 456888899999999875555554433 24566666643 223445455544
No 398
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=91.28 E-value=0.17 Score=57.70 Aligned_cols=10 Identities=20% Similarity=0.411 Sum_probs=5.5
Q ss_pred HHHHHcCCCe
Q 002040 665 LARKVLNKPV 674 (976)
Q Consensus 665 l~~~~l~~~~ 674 (976)
|+..|+..|-
T Consensus 596 LVSRFYRaPE 605 (752)
T KOG0670|consen 596 LVSRFYRAPE 605 (752)
T ss_pred HHHHhccCcc
Confidence 5555555554
No 399
>PRK10689 transcription-repair coupling factor; Provisional
Probab=91.26 E-value=0.75 Score=59.84 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=63.8
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-cccccCCCCCCcEEE
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLDVKELELVI 787 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-v~~~GlDi~~v~~VI 787 (976)
.+.++||.|||..-|.+++..|... ++.+..++|..+..++..++..+.+|.++|||+|. .+...+.+..+.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4668999999999999988887653 46778899999999999999999999999999997 344456777888887
Q ss_pred E
Q 002040 788 N 788 (976)
Q Consensus 788 ~ 788 (976)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 400
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=91.23 E-value=1.3 Score=49.12 Aligned_cols=143 Identities=17% Similarity=0.199 Sum_probs=72.4
Q ss_pred cHHHHHHHHHHhcCCC------EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 491 MPIQAQALPVIMSGRD------CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 491 ~~~Q~~~i~~il~g~d------~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
...|...+..++...+ +++.|.+|+|||.+ +..++.++ +-..++++|.- |.-+.--+..++
T Consensus 11 Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~-~r~~l~~~----------n~~~vw~n~~e--cft~~~lle~IL 77 (438)
T KOG2543|consen 11 RESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYL-VRQLLRKL----------NLENVWLNCVE--CFTYAILLEKIL 77 (438)
T ss_pred hHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHH-HHHHHhhc----------CCcceeeehHH--hccHHHHHHHHH
Confidence 4678888888887665 38889999999975 44444443 11234554421 111222222222
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC--CchHHHHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG--FEPQITRIV 642 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~--f~~~i~~il 642 (976)
...+ .+-..|......... -..++..+.+. ....+....-+||+|-|+.+-+++ ..+.+..+-
T Consensus 78 ~~~~---~~d~dg~~~~~~~en-----------~~d~i~~l~q~-~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~ 142 (438)
T KOG2543|consen 78 NKSQ---LADKDGDKVEGDAEN-----------FSDFIYLLVQW-PAATNRDQKVFLILDNADALRDMDAILLQCLFRLY 142 (438)
T ss_pred HHhc---cCCCchhhhhhHHHH-----------HHHHHHHHHhh-HHhhccCceEEEEEcCHHhhhccchHHHHHHHHHH
Confidence 2211 000011101000001 11122233221 111233456799999999988876 333444444
Q ss_pred HhcCCCCcEEEEeccCcHH
Q 002040 643 QNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 643 ~~~~~~~q~i~~SAT~~~~ 661 (976)
..++.+.-.|+||+++++.
T Consensus 143 el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 143 ELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhCCCceEEEEeccccHH
Confidence 4555555568899998765
No 401
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=91.23 E-value=0.79 Score=56.05 Aligned_cols=94 Identities=20% Similarity=0.222 Sum_probs=77.3
Q ss_pred ecCcchHHHHHHHHHHhhhcCC-cEEEEecCHHHHHHHHHHHHH-CCCCceeccCCCCHHHHHHHHHHhccCCccEEEec
Q 002040 694 VRPESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLK-HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (976)
Q Consensus 694 ~~~~~~k~~~l~~~l~~~~~~~-kvLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 771 (976)
-.+.+.|....++++......| .+||.+|-+.....+...|.. .|.++..+|+++++.+|........+|..+|+|.|
T Consensus 224 GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGt 303 (730)
T COG1198 224 GVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGT 303 (730)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEe
Confidence 3456778888888888877666 899999999888888877765 48899999999999999999999999999999999
Q ss_pred CcccccCCCCCCcEEEE
Q 002040 772 SVAARGLDVKELELVIN 788 (976)
Q Consensus 772 ~v~~~GlDi~~v~~VI~ 788 (976)
-.+-- +-++++.+||.
T Consensus 304 RSAlF-~Pf~~LGLIIv 319 (730)
T COG1198 304 RSALF-LPFKNLGLIIV 319 (730)
T ss_pred chhhc-CchhhccEEEE
Confidence 74431 45667777775
No 402
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.22 E-value=1 Score=58.25 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
..--+||||.+|.+.+......+..++...++...+|+.|-+.|+
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 344689999999875555556777888888888889888877544
No 403
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.05 E-value=0.5 Score=53.45 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=20.8
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
.+.-++++||||||||+. +..++.++..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 456789999999999985 4556666543
No 404
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.02 E-value=3.7 Score=47.99 Aligned_cols=98 Identities=16% Similarity=0.301 Sum_probs=73.2
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH---HHHHh
Q 002040 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK 588 (976)
Q Consensus 512 ~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~ 588 (976)
-+++|++..-++++.+.+.. +-.|.+||.+-+.+-|.|++.++.. .-++.+.+++|..+..+. +..+.
T Consensus 365 lvF~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~FR 435 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMERFR 435 (593)
T ss_pred heeeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHHHh
Confidence 45788888878877777664 3467889999999999999888862 357888889998655443 34444
Q ss_pred cC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 589 RG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 589 ~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
.| ..|+||| ++|.++ .+|..+.+||.+..-
T Consensus 436 ~g~IwvLicT-----dll~RG----iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 436 IGKIWVLICT-----DLLARG----IDFKGVNLVINYDFP 466 (593)
T ss_pred ccCeeEEEeh-----hhhhcc----ccccCcceEEecCCC
Confidence 44 5899999 566554 689999999986655
No 405
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=90.92 E-value=1.1 Score=50.86 Aligned_cols=71 Identities=14% Similarity=0.356 Sum_probs=52.7
Q ss_pred CCcE-EEEecCHHHHHHHHHHHH----HCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC--cc----cccCCCCC
Q 002040 714 KGKI-LIFVHSQEKCDALFRDLL----KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS--VA----ARGLDVKE 782 (976)
Q Consensus 714 ~~kv-LIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~--v~----~~GlDi~~ 782 (976)
.|++ ||.|+|++-|.++....+ -+|+.++++||+++..++...++ -.+-|+|||+ ++ --++|+..
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~r 370 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSR 370 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhccccee
Confidence 3454 677899998877765544 35899999999999888776665 3467999997 22 25789988
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.++|+
T Consensus 371 vS~LV~ 376 (731)
T KOG0339|consen 371 VSYLVL 376 (731)
T ss_pred eeEEEE
Confidence 888775
No 406
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.88 E-value=0.72 Score=53.08 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
+.+|+.||+|+|||+.
T Consensus 166 ~gvLL~GppGtGKT~l 181 (389)
T PRK03992 166 KGVLLYGPPGTGKTLL 181 (389)
T ss_pred CceEEECCCCCChHHH
Confidence 5799999999999975
No 407
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.74 E-value=2.1 Score=54.45 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l 523 (976)
..+.|++||+|+|||..+-.
T Consensus 194 ~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred CCceEEEcCCCCCHHHHHHH
Confidence 35899999999999976443
No 408
>PRK04328 hypothetical protein; Provisional
Probab=90.64 E-value=1 Score=48.46 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=32.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
|..+++.|++|+|||+..+..+...+.. |..+++++ +.+-..++...+..|
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQF 73 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHc
Confidence 5678889999999998766555554432 44566665 333444555555443
No 409
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.64 E-value=1.2 Score=46.91 Aligned_cols=51 Identities=18% Similarity=0.242 Sum_probs=31.9
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
|.-+++.|++|+|||+.++..+...+. ++..|++++.. +-..++...+..+
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~--------~g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK--------NGEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEECC-CCHHHHHHHHHHc
Confidence 456888999999999765544544433 24456776653 3445665555543
No 410
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=90.63 E-value=1.4 Score=50.06 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
|.-+++.|++|+|||+.++..+... .. .+..+|++.-. +...|+...+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~-a~-------~g~~VlYvs~E-Es~~qi~~Ra~r 131 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL-AK-------RGGKVLYVSGE-ESPEQIKLRADR 131 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-Hh-------cCCeEEEEECC-cCHHHHHHHHHH
Confidence 4567888999999998654444333 22 23467777653 334555444443
No 411
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.52 E-value=1.7 Score=51.55 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=25.7
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
...+.+|||||||.|.... ...+..++...++...+|+++
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4568899999999875432 234555566555555555554
No 412
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.47 E-value=0.58 Score=53.22 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=22.5
Q ss_pred HHHHHhcCCCEEEEcCCCCchHHHHHH
Q 002040 497 ALPVIMSGRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 497 ~i~~il~g~d~i~~a~TGsGKT~~~~l 523 (976)
+++++-.+.|+|+.||+|+|||..|..
T Consensus 202 l~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 202 LLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred hHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 347788899999999999999976553
No 413
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=90.32 E-value=2.8 Score=46.60 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=24.0
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEec
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SA 656 (976)
...+|||||+|.+.... ...+..++....+...+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~~-~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSDA-QQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHHH-HHHHHHHHhcCCCCCeEEEEeC
Confidence 35799999999874322 2345555665555565555443
No 414
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=90.27 E-value=0.84 Score=47.04 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
-++|+.||+|+|||++..
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 379999999999998743
No 415
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.24 E-value=0.68 Score=56.31 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.3
Q ss_pred CCEEEEcCCCCchHHHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~i 525 (976)
..+|+.|+.|+|||.++.+.+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 357999999999998754433
No 416
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=90.23 E-value=1.1 Score=52.29 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=23.5
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
.|.-+++.|.+|+|||..++-.+.+.... .+..|+|++
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~-------~g~~v~~fS 230 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR-------EGKPVLFFS 230 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEEE
Confidence 35567888999999997544433333222 244567766
No 417
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.21 E-value=2.2 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.129 Sum_probs=16.1
Q ss_pred CEEEEcCCCCchHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~i 525 (976)
.+|++||.|+|||+++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998755443
No 418
>PHA00350 putative assembly protein
Probab=90.21 E-value=1.1 Score=51.03 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=18.3
Q ss_pred EEEEcCCCCchHHHHHH-HHHHHHhc
Q 002040 507 CIGVAKTGSGKTLAFVL-PMLRHIKD 531 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l-~il~~l~~ 531 (976)
.|+.|..|||||+.++. .++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57889999999988765 35555443
No 419
>PRK07413 hypothetical protein; Validated
Probab=90.16 E-value=1.7 Score=48.91 Aligned_cols=53 Identities=15% Similarity=0.316 Sum_probs=41.1
Q ss_pred CCceEEEecCcccccccCCch--HHHHHHHhcCCCCcEEEEeccCcHHHHHHHHH
Q 002040 616 RRVTYLVMDEADRMFDMGFEP--QITRIVQNIRPDRQTVLFSATFPRQVEILARK 668 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~--~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~ 668 (976)
..+++|||||+-..++.++.+ .+..++...++...+|++.-.+|+.+..++..
T Consensus 124 g~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~ADl 178 (382)
T PRK07413 124 GLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIADL 178 (382)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCCe
Confidence 568999999999888888654 56777777777777788777888887766544
No 420
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.13 E-value=1.2 Score=53.01 Aligned_cols=89 Identities=17% Similarity=0.218 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCHHHHH----HHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 700 RFLRLLELLGEWYEKGKILIFVHSQEKCD----ALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 700 k~~~l~~~l~~~~~~~kvLIF~~s~~~~~----~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
-+..++.++.....+.++.+-+||---|. .+..+|...|+.+..+.|.+....|..++....+|.++|+|.|-++-
T Consensus 297 TvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi 376 (677)
T COG1200 297 TVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI 376 (677)
T ss_pred HHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh
Confidence 45666777776666779999999965554 45555666799999999999999999999999999999999998554
Q ss_pred -ccCCCCCCcEEEE
Q 002040 776 -RGLDVKELELVIN 788 (976)
Q Consensus 776 -~GlDi~~v~~VI~ 788 (976)
..+.+.++-+||.
T Consensus 377 Qd~V~F~~LgLVIi 390 (677)
T COG1200 377 QDKVEFHNLGLVII 390 (677)
T ss_pred hcceeecceeEEEE
Confidence 7899999998885
No 421
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.11 E-value=1.1 Score=51.15 Aligned_cols=81 Identities=23% Similarity=0.235 Sum_probs=46.2
Q ss_pred cCCceEEEecCcccccccC------------CchHHHHHHHhcCCCCcEEEEecc-CcHHHHHHHHHHcCCCeEEEeCCc
Q 002040 615 LRRVTYLVMDEADRMFDMG------------FEPQITRIVQNIRPDRQTVLFSAT-FPRQVEILARKVLNKPVEIQVGGR 681 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~------------f~~~i~~il~~~~~~~q~i~~SAT-~~~~~~~l~~~~l~~~~~i~~~~~ 681 (976)
....++|+|||+|.++..- -...+..+.....++-++++++|| .|-.+...+...+..-++|
T Consensus 243 ~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yi----- 317 (428)
T KOG0740|consen 243 SLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYI----- 317 (428)
T ss_pred hcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeee-----
Confidence 3457889999999876421 011223333444566689999999 4555655555544433322
Q ss_pred ccccCCceEEEEecCcchHHHHHHHHHHhh
Q 002040 682 SVVNKDITQLVEVRPESDRFLRLLELLGEW 711 (976)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~ 711 (976)
.......+...+..+|...
T Consensus 318 -----------plPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 318 -----------PLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred -----------cCCCHHHHHHHHHHHHHhC
Confidence 2233455666666666653
No 422
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.10 E-value=1.7 Score=48.32 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=27.0
Q ss_pred ccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 614 ~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
....+.++|||+||.|... -...+.+++..-+++..+|++|..
T Consensus 105 ~~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 105 QLNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred ccCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 3456889999999988532 244555666664555545555544
No 423
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=90.05 E-value=1.2 Score=50.09 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=26.1
Q ss_pred ccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 614 ~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
....+.++|||+||.|... -...+.+++..=++..-+|++|.-
T Consensus 105 ~~g~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTDA-AANALLKTLEEPPENTWFFLACRE 147 (334)
T ss_pred ccCCceEEEEcchHhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 3456889999999988532 244455555554444444444443
No 424
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.05 E-value=0.8 Score=51.96 Aligned_cols=27 Identities=22% Similarity=0.291 Sum_probs=20.7
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
+..+|++|+||||||+. +..++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44688999999999975 5667777654
No 425
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.00 E-value=1.2 Score=49.47 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
+|+++.||+|+|||+.
T Consensus 385 RNilfyGPPGTGKTm~ 400 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMF 400 (630)
T ss_pred hheeeeCCCCCCchHH
Confidence 6899999999999975
No 426
>PF05729 NACHT: NACHT domain
Probab=89.99 E-value=1.7 Score=42.86 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=17.8
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
-++|.|+.|+|||+. +..++..+..
T Consensus 2 ~l~I~G~~G~GKStl-l~~~~~~~~~ 26 (166)
T PF05729_consen 2 VLWISGEPGSGKSTL-LRKLAQQLAE 26 (166)
T ss_pred EEEEECCCCCChHHH-HHHHHHHHHh
Confidence 368899999999986 4444545444
No 427
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.94 E-value=0.79 Score=50.83 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
.+++++||+|+|||..+
T Consensus 31 ~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999753
No 428
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=0.59 Score=55.99 Aligned_cols=146 Identities=23% Similarity=0.243 Sum_probs=77.9
Q ss_pred HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEE--------
Q 002040 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCV-------- 572 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~-------- 572 (976)
|-.|..+-++||.|+|||++ +.++.++++ ...|...|==+|-+.+-..++. +.....+-..+
T Consensus 491 i~pGe~vALVGPSGsGKSTi--asLL~rfY~-----PtsG~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~e 560 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTI--ASLLLRFYD-----PTSGRILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIRE 560 (716)
T ss_pred eCCCCEEEEECCCCCCHHHH--HHHHHHhcC-----CCCCeEEECCeehhhcCHHHHH---HHeeeeeccceeecccHHH
Confidence 33578899999999999985 445555553 1223332333466665544433 21111111111
Q ss_pred -EeeCCC--------------ChHHHHHHHhcCCeEEEeCchhHHHHHHhcC--CcccccCCceEEEecCcccccccCCc
Q 002040 573 -PVYGGS--------------GVAQQISELKRGTEIVVCTPGRMIDILCTSG--GKITNLRRVTYLVMDEADRMFDMGFE 635 (976)
Q Consensus 573 -~~~gg~--------------~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~--~~~~~l~~~~~vVlDEah~~~~~~f~ 635 (976)
+.||-. +..+.+..+..|++-.|+.-|..+.==.++. -....+++..++|+|||-.-+|..-+
T Consensus 561 NI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE 640 (716)
T KOG0058|consen 561 NIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESE 640 (716)
T ss_pred HHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhH
Confidence 112211 1112333444566666666654321000000 00013567889999999988888878
Q ss_pred hHHHHHHHhcCCCCcEEEEecc
Q 002040 636 PQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 636 ~~i~~il~~~~~~~q~i~~SAT 657 (976)
..+...+..+..+ +++++=|-
T Consensus 641 ~lVq~aL~~~~~~-rTVlvIAH 661 (716)
T KOG0058|consen 641 YLVQEALDRLMQG-RTVLVIAH 661 (716)
T ss_pred HHHHHHHHHhhcC-CeEEEEeh
Confidence 8888888777666 45554443
No 429
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.90 E-value=1.1 Score=45.06 Aligned_cols=51 Identities=18% Similarity=0.381 Sum_probs=39.4
Q ss_pred CCceEEEecCcccccccCCch--HHHHHHHhcCCCCcEEEEeccCcHHHHHHH
Q 002040 616 RRVTYLVMDEADRMFDMGFEP--QITRIVQNIRPDRQTVLFSATFPRQVEILA 666 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~--~i~~il~~~~~~~q~i~~SAT~~~~~~~l~ 666 (976)
..+++|||||+-..++.++.+ .+..++...++..-+|++.-.+|+.+..++
T Consensus 114 ~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~A 166 (178)
T PRK07414 114 GRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIA 166 (178)
T ss_pred CCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhC
Confidence 568999999999888888654 567778877777777777777888766554
No 430
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.88 E-value=2.8 Score=53.23 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
.++|++|+.|+|||...
T Consensus 209 ~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVV 225 (852)
T ss_pred CceeEECCCCCCHHHHH
Confidence 58999999999999764
No 431
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=89.82 E-value=0.22 Score=64.94 Aligned_cols=92 Identities=35% Similarity=0.470 Sum_probs=74.7
Q ss_pred EEEEecCHHHHHHHHHHHHHC-CCCceeccCCCCH-----------HHHHHHHHHhccCCccEEEecCcccccCCCCCCc
Q 002040 717 ILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQ-----------TDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (976)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~-----------~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~ 784 (976)
.||||+....+..++..+... .+.+..+.|.+.+ ..+..++..|....+++|++|.++..|+|++.++
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~ 374 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCN 374 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhh
Confidence 489999888888888777654 2333334444322 2356889999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCCC
Q 002040 785 LVINFDAPNHYEDYVHRVGRTGRA 808 (976)
Q Consensus 785 ~VI~~d~p~s~~~y~Qr~GR~gR~ 808 (976)
.||.++.|.....|+|..||+-..
T Consensus 375 ~~~~~~~~~~~~~~vq~~~r~~~~ 398 (1606)
T KOG0701|consen 375 LVVLFDAPTYYRSYVQKKGRARAA 398 (1606)
T ss_pred hheeccCcchHHHHHHhhcccccc
Confidence 999999999999999999998654
No 432
>PRK07413 hypothetical protein; Validated
Probab=89.75 E-value=0.54 Score=52.89 Aligned_cols=53 Identities=15% Similarity=0.164 Sum_probs=38.8
Q ss_pred CCceEEEecCcccccccCCch--HHHHHHHhcCCCCcEEEEecc-CcHHHHHHHHH
Q 002040 616 RRVTYLVMDEADRMFDMGFEP--QITRIVQNIRPDRQTVLFSAT-FPRQVEILARK 668 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~--~i~~il~~~~~~~q~i~~SAT-~~~~~~~l~~~ 668 (976)
..+++|||||+-..++.++.+ .+..++...++...+|++.-. +|+.+..++..
T Consensus 304 g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~~ap~~lie~ADl 359 (382)
T PRK07413 304 GLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRCKNQPAYFDLASV 359 (382)
T ss_pred CCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHhCch
Confidence 468999999999888888765 577777776666666665555 77877666543
No 433
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.69 E-value=0.78 Score=51.79 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=21.9
Q ss_pred HhcCCCEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
|-.|+.++|+|+.|+|||+. +..+.+.+..
T Consensus 166 IGkGQR~lIvgppGvGKTTL-aK~Ian~I~~ 195 (416)
T PRK09376 166 IGKGQRGLIVAPPKAGKTVL-LQNIANSITT 195 (416)
T ss_pred cccCceEEEeCCCCCChhHH-HHHHHHHHHh
Confidence 34788999999999999975 4445555543
No 434
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.67 E-value=0.55 Score=57.35 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=15.7
Q ss_pred CEEEEcCCCCchHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~i 525 (976)
-+|++||.|+|||.++.+.+
T Consensus 42 AYLF~GP~GtGKTt~AriLA 61 (725)
T PRK07133 42 AYLFSGPRGTGKTSVAKIFA 61 (725)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 36899999999998755443
No 435
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=1.6 Score=48.20 Aligned_cols=18 Identities=28% Similarity=0.361 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
-+.+|+.||+|+|||+.+
T Consensus 185 PKGVLLYGPPGTGKTLLA 202 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 367999999999999853
No 436
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.63 E-value=1.4 Score=50.73 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=27.5
Q ss_pred CceEEEecCcccccccCCc-------hHHHHHH---HhcCCCCcEEEEeccCcHH
Q 002040 617 RVTYLVMDEADRMFDMGFE-------PQITRIV---QNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~-------~~i~~il---~~~~~~~q~i~~SAT~~~~ 661 (976)
-.++|.|||.|.+...-.. ..+..++ .-+.++--+|++.||-.+.
T Consensus 396 APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe 450 (752)
T KOG0734|consen 396 APCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPE 450 (752)
T ss_pred CCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChh
Confidence 3578999999977543211 1122232 3345667799999995544
No 437
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.55 E-value=1.6 Score=51.18 Aligned_cols=37 Identities=16% Similarity=0.014 Sum_probs=22.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
|.-++|.|++|+|||..++-.+.+.+.. .+..|++++
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~-------~g~~vl~~S 231 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIK-------EGKPVAFFS 231 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHh-------CCCeEEEEe
Confidence 4457888999999997544333333322 244566665
No 438
>COG1485 Predicted ATPase [General function prediction only]
Probab=89.54 E-value=1.2 Score=48.96 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=62.0
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI 584 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 584 (976)
+.+.++|+.|.|||. ++-++.+..... .-.-++.......+++.+..+. |.
T Consensus 66 ~GlYl~GgVGrGKT~--LMD~Fy~~lp~~---------~k~R~HFh~FM~~vH~~l~~l~------------g~------ 116 (367)
T COG1485 66 RGLYLWGGVGRGKTM--LMDLFYESLPGE---------RKRRLHFHRFMARVHQRLHTLQ------------GQ------ 116 (367)
T ss_pred ceEEEECCCCccHHH--HHHHHHhhCCcc---------ccccccHHHHHHHHHHHHHHHc------------CC------
Confidence 679999999999996 444444432210 0133566666666666666642 11
Q ss_pred HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhc-CCCCcEEEEeccCcHHH
Q 002040 585 SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQV 662 (976)
Q Consensus 585 ~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~~ 662 (976)
.+.+ ..+..- .+....+|++||+| +.|-+-.-.+..++..+ .....++.+|.|.|..+
T Consensus 117 ------~dpl----~~iA~~---------~~~~~~vLCfDEF~-VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~L 175 (367)
T COG1485 117 ------TDPL----PPIADE---------LAAETRVLCFDEFE-VTDIADAMILGRLLEALFARGVVLVATSNTAPDNL 175 (367)
T ss_pred ------CCcc----HHHHHH---------HHhcCCEEEeeeee-ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHh
Confidence 1100 001111 13347899999999 33333333444555443 45677888899988763
No 439
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.39 E-value=0.61 Score=52.38 Aligned_cols=46 Identities=24% Similarity=0.240 Sum_probs=30.9
Q ss_pred HHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 499 PVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 499 ~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
.++..+.+++++|+||||||+. +-.++.++- ....++.+-.+.+|.
T Consensus 157 ~~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~--------~~~rivtiEd~~El~ 202 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTM-SKTLISAIP--------PQERLITIEDTLELV 202 (344)
T ss_pred HHHHcCCeEEEECCCCccHHHH-HHHHHcccC--------CCCCEEEECCCcccc
Confidence 3455788999999999999974 444444332 133566777777763
No 440
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.34 E-value=0.8 Score=50.77 Aligned_cols=42 Identities=19% Similarity=0.162 Sum_probs=26.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
|.-++|.|++|||||+.++..+. .... .+..|+++..-..+.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~-~~~~-------~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIA-EAQK-------AGGTAAFIDAEHALD 96 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH-------cCCcEEEEcccchhH
Confidence 45688999999999986444444 4332 245667775544443
No 441
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.33 E-value=1.1 Score=56.26 Aligned_cols=54 Identities=20% Similarity=0.371 Sum_probs=31.2
Q ss_pred CcccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
.|..+|.+.+....+...|... .+..|.-++... +...+.+|+.||+|+|||+.
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 503 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMG---IRPPKGVLLFGPPGTGKTLL 503 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEECCCCCCHHHH
Confidence 3456788887777666655531 222111111110 11235689999999999975
No 442
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=89.20 E-value=0.12 Score=51.90 Aligned_cols=119 Identities=17% Similarity=0.207 Sum_probs=51.9
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 585 (976)
++++.|+.|+|||+. +.-++..+.... -+.+-+++|-.- .-....|..++.+..|.... +.
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~~~------~~v~Gf~t~evr----------~~g~r~GF~iv~l~~g~~~~--la 61 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKKKG------LPVGGFYTEEVR----------ENGRRIGFDIVDLNSGEEAI--LA 61 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHHTC------GGEEEEEEEEEE----------TTSSEEEEEEEET-TS-EEE--EE
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhccC------CccceEEeeccc----------CCCceEEEEEEECcCCCccc--cc
Confidence 378999999999986 556666665421 123334443210 01111234444432221000 00
Q ss_pred HHhcCCeEEEeCchhHHHHHHhcCCcccc--cCCceEEEecCcccccc--cCCchHHHHHHH
Q 002040 586 ELKRGTEIVVCTPGRMIDILCTSGGKITN--LRRVTYLVMDEADRMFD--MGFEPQITRIVQ 643 (976)
Q Consensus 586 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~--l~~~~~vVlDEah~~~~--~~f~~~i~~il~ 643 (976)
.......+-++.+....+.+......... +...++|||||+=.|-- .+|...+..++.
T Consensus 62 ~~~~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 62 RVDFRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp ETTSS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred cccccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 00011233444444443444332212222 35678999999997633 345555655555
No 443
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.17 E-value=0.74 Score=57.70 Aligned_cols=53 Identities=25% Similarity=0.356 Sum_probs=29.0
Q ss_pred cccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
|-.+|++++-....+..|..+ .+..|.-++... +..++.+++.||+|+|||+.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 345677776555554444331 222211111111 12357899999999999975
No 444
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.13 E-value=1.3 Score=52.91 Aligned_cols=68 Identities=21% Similarity=0.344 Sum_probs=55.2
Q ss_pred EEEEecCHHHHHHHHHHHHHC-----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----ccccc-CCCCCCcE
Q 002040 717 ILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-LDVKELEL 785 (976)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~~G-lDi~~v~~ 785 (976)
+||++||++-|.++++.+... ++.++.++|+++...+...+. .| .+|||||+ .+.+| +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~---~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK---RG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh---cC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998887653 567899999998777665444 46 99999996 55566 89999999
Q ss_pred EEE
Q 002040 786 VIN 788 (976)
Q Consensus 786 VI~ 788 (976)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 885
No 445
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.12 E-value=0.98 Score=53.85 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=29.0
Q ss_pred CcccccccCCCCHHHHHHHHHcC--CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRKLN--YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~--~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
.|-.+|.+++....+...+...- +..|..++... +...+.+|+.||+|+|||+.
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g---~~~~~giLL~GppGtGKT~l 104 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLG---AKIPKGVLLVGPPGTGKTLL 104 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcC---CCCCCcEEEECCCCCCHHHH
Confidence 45567777765555544333210 11121121111 11235799999999999975
No 446
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=89.09 E-value=7.1 Score=47.91 Aligned_cols=104 Identities=17% Similarity=0.210 Sum_probs=65.5
Q ss_pred cEEEEecCHHHHHHHHHHHHHC-------CCCceeccCCCCHHHHHHHHHHhccC--------CccEEEecCcccccCCC
Q 002040 716 KILIFVHSQEKCDALFRDLLKH-------GYPCLSLHGAKDQTDRESTISDFKSN--------VCNLLIATSVAARGLDV 780 (976)
Q Consensus 716 kvLIF~~s~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~R~~~~~~F~~g--------~~~vLVaT~v~~~GlDi 780 (976)
.+|||++++...+.+...+... ++.- .+.+--+...-..++..|.++ ..-+.||--.+++|||+
T Consensus 563 G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlDF 641 (945)
T KOG1132|consen 563 GLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLDF 641 (945)
T ss_pred ceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCCc
Confidence 4999999999888885555432 1222 222222444445666666533 33455677788999999
Q ss_pred CC--CcEEEEeCCCCC--------------------------------------HHHHHHHhcccCCCCCccEEEEEecC
Q 002040 781 KE--LELVINFDAPNH--------------------------------------YEDYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 781 ~~--v~~VI~~d~p~s--------------------------------------~~~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
.+ ...||..+.|.- .-...|.+||+-|.-+.=.+++|++.
T Consensus 642 sD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAiGRviRHR~D~Gav~l~D~ 721 (945)
T KOG1132|consen 642 SDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAIGRVIRHRNDYGAVILCDD 721 (945)
T ss_pred cccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHHHHHHhhhcccceeeEeec
Confidence 76 667888777641 11235999999987555445556654
No 447
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.04 E-value=2.7 Score=53.41 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.9
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
..++|++|++|+|||...-
T Consensus 199 ~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCceEEECCCCCCHHHHHH
Confidence 3589999999999998643
No 448
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.01 E-value=3 Score=50.24 Aligned_cols=19 Identities=26% Similarity=0.078 Sum_probs=15.3
Q ss_pred CEEEEcCCCCchHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~ 524 (976)
-+|+.||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999875443
No 449
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.91 E-value=2.9 Score=42.66 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=17.1
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
.+|+.|+.|+|||..+. .+...+.
T Consensus 16 ~~L~~G~~G~gkt~~a~-~~~~~l~ 39 (188)
T TIGR00678 16 AYLFAGPEGVGKELLAL-ALAKALL 39 (188)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHHc
Confidence 48899999999997643 3444443
No 450
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=88.90 E-value=0.53 Score=49.82 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=14.3
Q ss_pred EEEEcCCCCchHHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il 526 (976)
++|.|..|||||.. +.-++
T Consensus 1 ~vv~G~pGsGKSt~-i~~~~ 19 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL-IKKLL 19 (234)
T ss_pred CEEEcCCCCCHHHH-HHHHH
Confidence 47889999999985 44444
No 451
>PF12846 AAA_10: AAA-like domain
Probab=88.77 E-value=1.2 Score=49.07 Aligned_cols=41 Identities=29% Similarity=0.458 Sum_probs=28.8
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
.+++++|+||||||+.+. .++..+.. .++.++|+=|.-+..
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~ 42 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYS 42 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHH
Confidence 578999999999998755 55544443 256778887765443
No 452
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.76 E-value=1.3 Score=49.57 Aligned_cols=45 Identities=27% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 500 ~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
++..+.+++++|+||||||+. +-+++.++-. ..+++++=-+.+|.
T Consensus 156 ~v~~~~nili~G~tgSGKTTl-l~aL~~~ip~--------~~ri~tiEd~~El~ 200 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTTF-TNAALREIPA--------IERLITVEDAREIV 200 (332)
T ss_pred HHHcCCcEEEECCCCCCHHHH-HHHHHhhCCC--------CCeEEEecCCCccc
Confidence 344678999999999999974 4555555422 33566665666653
No 453
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=88.74 E-value=1.7 Score=47.22 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.9
Q ss_pred HHHHHhc-C--CCEEEEcCCCCchHHH
Q 002040 497 ALPVIMS-G--RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 497 ~i~~il~-g--~d~i~~a~TGsGKT~~ 520 (976)
.++.+.. + .++++.|++|+|||+.
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 3555553 3 5789999999999974
No 454
>PRK06904 replicative DNA helicase; Validated
Probab=88.69 E-value=3.9 Score=48.26 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
|.=+||.|.||.|||.. ++-+..++... .+..|+|++.- .-..|+...+
T Consensus 221 G~LiiIaarPg~GKTaf-alnia~~~a~~------~g~~Vl~fSlE-Ms~~ql~~Rl 269 (472)
T PRK06904 221 SDLIIVAARPSMGKTTF-AMNLCENAAMA------SEKPVLVFSLE-MPAEQIMMRM 269 (472)
T ss_pred CcEEEEEeCCCCChHHH-HHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHH
Confidence 34467778999999975 44444443321 13446666532 3334444443
No 455
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.61 E-value=2.1 Score=50.55 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=24.2
Q ss_pred ccceeeeecCCcHHHHHHHHHHHHHHHH
Q 002040 928 IRKLYLFIEGPTEQSVKRAKAELKRVLE 955 (976)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 955 (976)
+-|+|+.||++.+...+.-+.-|+...-
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (486)
T PRK14953 416 EGKITIKVEKSEEDTLDLEIKSIKKYFP 443 (486)
T ss_pred cCceEEEecccHHHHHHHHHHHHHHhCC
Confidence 8899999999999999888888887653
No 456
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.56 E-value=1.7 Score=46.51 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcCCCCchHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~ 520 (976)
+-.|+.+++.|+.|+|||+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45788999999999999964
No 457
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.55 E-value=2.7 Score=53.32 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=17.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il 526 (976)
..++|++|++|+|||..+-..+.
T Consensus 200 ~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 200 KNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred cCCeEEECCCCCCHHHHHHHHHH
Confidence 35899999999999987543333
No 458
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.53 E-value=0.83 Score=51.32 Aligned_cols=18 Identities=22% Similarity=0.135 Sum_probs=15.2
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
..+++.||+|+|||..+.
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 479999999999997643
No 459
>CHL00176 ftsH cell division protein; Validated
Probab=88.45 E-value=1.2 Score=54.36 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
+.+|+.||+|+|||+.+
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999753
No 460
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=88.38 E-value=3.5 Score=43.55 Aligned_cols=49 Identities=18% Similarity=0.220 Sum_probs=28.7
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
.|..+++.|++|+|||+.++..+...+.. +..+++++. -..+.++...+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~ 67 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQA 67 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHH
Confidence 35678999999999998655444444321 335566653 22334444433
No 461
>PRK13764 ATPase; Provisional
Probab=88.35 E-value=0.93 Score=54.43 Aligned_cols=27 Identities=11% Similarity=0.166 Sum_probs=20.9
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
.+.++|++|+||||||+. +.+++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999975 555666654
No 462
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.34 E-value=1.1 Score=53.48 Aligned_cols=228 Identities=16% Similarity=0.173 Sum_probs=113.2
Q ss_pred CCCcHHHHHHHHHHhc--------CC--CEEEEc--CCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHH
Q 002040 488 EKPMPIQAQALPVIMS--------GR--DCIGVA--KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ 555 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~--------g~--d~i~~a--~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q 555 (976)
..+...|.++|-...+ |. .+||-. ..|-|.|++. +.+-++|.. ..++|++.-+..|-..
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAg-iIfeNyLkG--------RKrAlW~SVSsDLKfD 333 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAG-IIFENYLKG--------RKRALWFSVSSDLKFD 333 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEE-EEehhhhcc--------cceeEEEEeccccccc
Confidence 3566788888866553 22 244443 4555667653 323334332 3578999887777655
Q ss_pred HHHHHHHHHhhcCcEEEEee----CCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcc-cc---c------CCceEE
Q 002040 556 IHSDIRKFAKVMGVRCVPVY----GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI-TN---L------RRVTYL 621 (976)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~----gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~-~~---l------~~~~~v 621 (976)
.-..+..+. ..++.|..+. +..+-.+. ... .-.||+||+..|+-.-....++. .. | ..=++|
T Consensus 334 AERDL~Dig-A~~I~V~alnK~KYakIss~en-~n~--krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 334 AERDLRDIG-ATGIAVHALNKFKYAKISSKEN-TNT--KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred hhhchhhcC-CCCccceehhhccccccccccc-CCc--cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 555555432 2344443321 11100000 011 23799999988865433211111 11 1 112589
Q ss_pred EecCcccccc---cC------CchHHHHHHHhcCCCCcEEEEeccC---cHHHHHHHHHHcCCCeEEEeCCcccccCCce
Q 002040 622 VMDEADRMFD---MG------FEPQITRIVQNIRPDRQTVLFSATF---PRQVEILARKVLNKPVEIQVGGRSVVNKDIT 689 (976)
Q Consensus 622 VlDEah~~~~---~~------f~~~i~~il~~~~~~~q~i~~SAT~---~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~ 689 (976)
|+||||+.-+ ++ -+..+..+-.. -|+..+|.-|||- |.++..+.+..+- +...
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~-LP~ARVVYASATGAsEPrNMaYM~RLGlW--------Gegt------ 474 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQKK-LPNARVVYASATGASEPRNMAYMVRLGLW--------GEGT------ 474 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHHHh-CCCceEEEeeccCCCCcchhhhhhhhccc--------cCCC------
Confidence 9999996543 11 22334444344 4677899999984 4444333322211 1111
Q ss_pred EEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCH
Q 002040 690 QLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750 (976)
Q Consensus 690 q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~ 750 (976)
...-|..++..+....-+.--||-+..+..-..|+..|.-.|+.+.+--=.|+.
T Consensus 475 -------af~eF~eFi~AvEkRGvGAMEIVAMDMK~rGmYiARQLSFkgVsFrieEv~ls~ 528 (1300)
T KOG1513|consen 475 -------AFPEFEEFIHAVEKRGVGAMEIVAMDMKLRGMYIARQLSFKGVSFRIEEVPLSK 528 (1300)
T ss_pred -------cCccHHHHHHHHHhcCCceeeeeehhhhhhhhhhhhhccccCceEEEEecccCH
Confidence 111233444444332222234666666666677777776666655443333443
No 463
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=88.32 E-value=1.1 Score=48.50 Aligned_cols=111 Identities=16% Similarity=0.152 Sum_probs=55.4
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC---HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT---RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA 581 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt---r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~ 581 (976)
.=+++.|.||.|||..++-.+++.+... +..|++++.- .+++..+...+ .++....+..|....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~-------~~~vly~SlEm~~~~l~~R~la~~------s~v~~~~i~~g~l~~ 86 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNG-------GYPVLYFSLEMSEEELAARLLARL------SGVPYNKIRSGDLSD 86 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT-------SSEEEEEESSS-HHHHHHHHHHHH------HTSTHHHHHCCGCHH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhc-------CCeEEEEcCCCCHHHHHHHHHHHh------hcchhhhhhccccCH
Confidence 4477889999999976555455444432 4567777742 33333332222 222222222233222
Q ss_pred HHHH-------HHhcCCeEE-EeCch----hHHHHHHhcCCcccccCCceEEEecCccccccc
Q 002040 582 QQIS-------ELKRGTEIV-VCTPG----RMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (976)
Q Consensus 582 ~~~~-------~l~~~~~Ii-v~Tp~----~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~ 632 (976)
..+. .+.. ..++ ..+|. .|...+.... .....+.+||||=.|.|...
T Consensus 87 ~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~---~~~~~~~~v~IDyl~ll~~~ 145 (259)
T PF03796_consen 87 EEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLK---REGKKVDVVFIDYLQLLKSE 145 (259)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHH---HHSTTEEEEEEEEGGGSBTS
T ss_pred HHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHH---hhccCCCEEEechHHHhcCC
Confidence 2222 2222 3344 34443 3433332210 12267899999999977653
No 464
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.21 E-value=2.1 Score=50.77 Aligned_cols=76 Identities=18% Similarity=0.284 Sum_probs=63.1
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-ccc------cC-CCCCCc
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-AAR------GL-DVKELE 784 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-~~~------Gl-Di~~v~ 784 (976)
..+.+||++|++.-+......|...|+.+..++|..+..++..++..+..|.++||++|+- +.. .+ ....+.
T Consensus 50 ~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~ 129 (470)
T TIGR00614 50 SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGIT 129 (470)
T ss_pred cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcC
Confidence 4678999999999999888899999999999999999999999999999999999999972 222 12 455677
Q ss_pred EEEE
Q 002040 785 LVIN 788 (976)
Q Consensus 785 ~VI~ 788 (976)
+||+
T Consensus 130 ~iVi 133 (470)
T TIGR00614 130 LIAV 133 (470)
T ss_pred EEEE
Confidence 7764
No 465
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.18 E-value=1.3 Score=47.88 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhc--CCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 492 PIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 492 ~~Q~~~i~~il~--g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
+.|.+.|..++. +..++++|+||||||+. +..++..+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~-l~all~~i 104 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTT-LYSALSEL 104 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHH-HHHHHhhh
Confidence 455666655543 33578899999999985 44455554
No 466
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=88.17 E-value=2.1 Score=46.91 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHHCCCCceeccCCCC
Q 002040 723 SQEKCDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 723 s~~~~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
|+..++.|+..|. .++.+...|-++.
T Consensus 259 SV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 259 SVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred HHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 5678899999994 6889999887764
No 467
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=88.09 E-value=2.2 Score=53.75 Aligned_cols=17 Identities=35% Similarity=0.255 Sum_probs=14.6
Q ss_pred CCCEEEEcCCCCchHHH
Q 002040 504 GRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~ 520 (976)
+..++++||+|+|||..
T Consensus 347 ~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSL 363 (775)
T ss_pred CceEEEECCCCCCHHHH
Confidence 45689999999999975
No 468
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=88.00 E-value=1.2 Score=50.91 Aligned_cols=17 Identities=29% Similarity=0.427 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchHHH
Q 002040 504 GRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~ 520 (976)
.+.+++.||+|+|||+.
T Consensus 156 p~gvLL~GppGtGKT~l 172 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLL 172 (364)
T ss_pred CceEEEECCCCCCHHHH
Confidence 35699999999999975
No 469
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.99 E-value=0.42 Score=50.10 Aligned_cols=45 Identities=27% Similarity=0.344 Sum_probs=29.9
Q ss_pred CcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCC-CEEEEcCCCCchHHHHHHHHHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGR-DCIGVAKTGSGKTLAFVLPMLRH 528 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~-d~i~~a~TGsGKT~~~~l~il~~ 528 (976)
..|.+|+.++||+.+.+. .+..+ -+|++|+|||||++. +..|+.+
T Consensus 105 ~~IPt~eeL~LPevlk~l-------------------a~~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 105 TKIPTFEELKLPEVLKDL-------------------ALAKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred ccCCcHHhcCCcHHHHHh-------------------hcccCceEEEECCCCCCchhh-HHHHhcc
Confidence 345578888887766542 12222 378889999999986 4555554
No 470
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=87.93 E-value=0.2 Score=48.77 Aligned_cols=119 Identities=18% Similarity=0.251 Sum_probs=61.1
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 585 (976)
.+++.|++|+|||+. ++-+...|.... -...-|+||- +..-.+..|+.++.+..|... +++
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~g------~kvgGf~t~E----------VR~gGkR~GF~Ivdl~tg~~~--~la 67 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREKG------YKVGGFITPE----------VREGGKRIGFKIVDLATGEEG--ILA 67 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhcC------ceeeeEEeee----------eecCCeEeeeEEEEccCCceE--EEE
Confidence 578999999999975 666666665431 1123466663 233334456777666544311 000
Q ss_pred HHhcCCeEEEeCchhHHHHHHhcCCc-c-cccCCceEEEecCcccccc--cCCchHHHHHHHh
Q 002040 586 ELKRGTEIVVCTPGRMIDILCTSGGK-I-TNLRRVTYLVMDEADRMFD--MGFEPQITRIVQN 644 (976)
Q Consensus 586 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~-~-~~l~~~~~vVlDEah~~~~--~~f~~~i~~il~~ 644 (976)
... ....-|+-++...+.+..-... + .-+..-++|||||+--|-. ..|...+..++..
T Consensus 68 ~~~-~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 68 RVG-FSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EcC-CCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 000 1233444444444433211000 0 0133458999999996632 2355555555543
No 471
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=87.81 E-value=1.4 Score=48.99 Aligned_cols=43 Identities=19% Similarity=0.099 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~ 554 (976)
|.-+.+.||+|||||+.++..+... .. .+..|+++.+--.+-.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~-~~-------~g~~~vyId~E~~~~~ 97 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEA-QK-------LGGTVAFIDAEHALDP 97 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH-------cCCCEEEECccccHHH
Confidence 4568899999999997644444443 32 2556788876555543
No 472
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.80 E-value=4.3 Score=49.53 Aligned_cols=42 Identities=7% Similarity=0.162 Sum_probs=25.0
Q ss_pred ccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 614 NLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 614 ~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
.+..+.+|||||||.|.... ...+..++...+... +++|.+|
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp~~t-ifIL~tt 159 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPPSYA-IFILATT 159 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCCCCe-EEEEEeC
Confidence 34568899999999875422 234455555544433 4445555
No 473
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=87.75 E-value=2.1 Score=49.16 Aligned_cols=71 Identities=17% Similarity=0.335 Sum_probs=51.6
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH---HHHHhc-CCeEEEeCchhHHHHHHhcCCcccc
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~ 614 (976)
..|.++|.+.|..-|..++..+.+ .|+.++.++||.+..+. +..+.. ..+|+|||. ... +-.+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK----~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD-----vAg----RGID 582 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEK----AGYKVTTLHGGKSQEQRENALADFREGTGDILVATD-----VAG----RGID 582 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhh----ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec-----ccc----cCCC
Confidence 357789999998888776666655 68999999999887665 344555 469999994 222 2257
Q ss_pred cCCceEEE
Q 002040 615 LRRVTYLV 622 (976)
Q Consensus 615 l~~~~~vV 622 (976)
+.++++||
T Consensus 583 IpnVSlVi 590 (673)
T KOG0333|consen 583 IPNVSLVI 590 (673)
T ss_pred CCccceee
Confidence 77787776
No 474
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=87.74 E-value=3 Score=45.23 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=43.5
Q ss_pred HHHHHHHHHh-cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCC--CCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCc
Q 002040 493 IQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA--AGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (976)
Q Consensus 493 ~Q~~~i~~il-~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~--~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~ 569 (976)
.|-+.|+.++ .|-.+|+.|+.|.|||++.+...+.......-+. ..+..+||+|..--. -..+...++.++..+++
T Consensus 77 ~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~-re~~L~Rl~~v~a~mgL 155 (402)
T COG3598 77 NSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELY-REDILERLEPVRARMGL 155 (402)
T ss_pred cChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccC-hHHHHHHHHHHHHHcCC
Confidence 4455666544 5667788899999999875544444333222111 223346677653211 13344667777776765
Q ss_pred E
Q 002040 570 R 570 (976)
Q Consensus 570 ~ 570 (976)
.
T Consensus 156 s 156 (402)
T COG3598 156 S 156 (402)
T ss_pred C
Confidence 4
No 475
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=87.69 E-value=1.3 Score=53.43 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=29.0
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
+.+-.++|+||+-.-+|......+...+..+.+++-+|+.|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56678899999987777766777777776665555555544
No 476
>PRK09354 recA recombinase A; Provisional
Probab=87.66 E-value=1.1 Score=50.18 Aligned_cols=42 Identities=19% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
|.-+.|.|++|||||+.++..+.+.. . .+..|++|..--.+-
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~-~-------~G~~~~yId~E~s~~ 101 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQ-K-------AGGTAAFIDAEHALD 101 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH-H-------cCCcEEEECCccchH
Confidence 45688999999999986555444443 2 256677777655554
No 477
>PHA00012 I assembly protein
Probab=87.61 E-value=4.5 Score=44.43 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=20.6
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
.++.|..|+|||+.++..|+..+..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5788999999999888777776654
No 478
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.58 E-value=2.4 Score=41.27 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=27.1
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
+.+..++|+||.-.-+|......+..++..+. . +|+++.-
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~-til~~th 125 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP--G-TVILVSH 125 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC--C-EEEEEEC
Confidence 44568999999997777766666777776663 3 4444443
No 479
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=87.53 E-value=2.6 Score=43.79 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=24.9
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
|.-+.+.|++|+|||...+..+.+.+. .+..|+++.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~--------~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR--------QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh--------CCCeEEEEECC
Confidence 456889999999999875544444332 24456666653
No 480
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.51 E-value=0.39 Score=50.56 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=18.1
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
+..++|.||.|+|||.. +..++..+
T Consensus 20 ~~~~~l~G~rg~GKTsL-l~~~~~~~ 44 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL-LKEFINEL 44 (234)
T ss_dssp SSEEEEEESTTSSHHHH-HHHHHHHC
T ss_pred CcEEEEEcCCcCCHHHH-HHHHHHHh
Confidence 36788889999999974 44455443
No 481
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.42 E-value=2.5 Score=49.64 Aligned_cols=20 Identities=20% Similarity=0.101 Sum_probs=15.7
Q ss_pred CEEEEcCCCCchHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~i 525 (976)
.+|+.||.|+|||.++.+.+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 47899999999998754433
No 482
>PRK07004 replicative DNA helicase; Provisional
Probab=87.40 E-value=2.5 Score=49.68 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=16.2
Q ss_pred CCCEEEEcCCCCchHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il 526 (976)
|.-+||.|.+|+|||..++-.+.
T Consensus 213 g~liviaarpg~GKT~~al~ia~ 235 (460)
T PRK07004 213 GELIIVAGRPSMGKTAFSMNIGE 235 (460)
T ss_pred CceEEEEeCCCCCccHHHHHHHH
Confidence 44577789999999975443333
No 483
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.35 E-value=0.42 Score=51.47 Aligned_cols=21 Identities=38% Similarity=0.458 Sum_probs=17.0
Q ss_pred hcCCCEEEEcCCCCchHHHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~ 522 (976)
++.-|++++||||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 345689999999999998644
No 484
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.35 E-value=2.8 Score=49.80 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=38.9
Q ss_pred HHHHHHhc-----CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 496 QALPVIMS-----GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 496 ~~i~~il~-----g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
..+..++. |.-+++.|++|+|||+..+..+...+. +|.+|++++ +-+-..|+...+..+
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~--------~ge~~~y~s-~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA--------NKERAILFA-YEESRAQLLRNAYSW 313 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEE-eeCCHHHHHHHHHHc
Confidence 34555554 456889999999999876655554433 255677776 445557777766654
No 485
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.08 E-value=2.7 Score=46.59 Aligned_cols=53 Identities=15% Similarity=0.286 Sum_probs=31.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHH----HHhcCCCEEEEcCCCCchHHHHH
Q 002040 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~----~il~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+|.+.|-...+.+.|+..=+. |.|.--+- .+..-+.+++.||+|+|||.++-
T Consensus 89 v~f~DIggLe~v~~~L~e~Vil---Plr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAK 145 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVIL---PLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAK 145 (386)
T ss_pred eehhhccchHHHHHHHHHHHhh---cccchhhhcccccccCCccceecCCCCchHHHHHH
Confidence 4678877777777766653221 22211111 11123679999999999998643
No 486
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=87.00 E-value=11 Score=42.02 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=15.4
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHh
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
+-+.|+.|+|||+. +-.++..+.
T Consensus 59 igi~G~~GaGKSTl-~~~l~~~l~ 81 (332)
T PRK09435 59 IGITGVPGVGKSTF-IEALGMHLI 81 (332)
T ss_pred EEEECCCCCCHHHH-HHHHHHHHH
Confidence 56679999999974 444444443
No 487
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=86.97 E-value=0.71 Score=53.75 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=30.8
Q ss_pred EeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 595 VCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 595 v~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
|-+||-...+-... .......+.|+|||-.-.+.+.+..+.++++...
T Consensus 570 vLS~GEqQRLa~AR----Lfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~g 617 (659)
T KOG0060|consen 570 VLSPGEQQRLAFAR----LFYHKPKFAILDECTSAVTEDVEGALYRKCREMG 617 (659)
T ss_pred hcCHHHHHHHHHHH----HHhcCCceEEeechhhhccHHHHHHHHHHHHHcC
Confidence 44566544432211 2345678999999998777777777777776654
No 488
>PRK08506 replicative DNA helicase; Provisional
Probab=86.95 E-value=3.6 Score=48.57 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=27.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
|.-+|+.|.||.|||..++ -++.++.. .+..|+|++.- .-+.|+...+
T Consensus 192 G~LivIaarpg~GKT~fal-~ia~~~~~-------~g~~V~~fSlE-Ms~~ql~~Rl 239 (472)
T PRK08506 192 GDLIIIAARPSMGKTTLCL-NMALKALN-------QDKGVAFFSLE-MPAEQLMLRM 239 (472)
T ss_pred CceEEEEcCCCCChHHHHH-HHHHHHHh-------cCCcEEEEeCc-CCHHHHHHHH
Confidence 3457778999999997544 44444432 24456666532 3334444443
No 489
>PRK10436 hypothetical protein; Provisional
Probab=86.94 E-value=1.1 Score=52.55 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhc--CCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 492 PIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 492 ~~Q~~~i~~il~--g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
+.|.+.|..++. +.-+|++||||||||+. +..++.++.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 555556655543 34578889999999986 345566543
No 490
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=86.90 E-value=3.1 Score=44.30 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=32.8
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCC----CCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVA----AGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~----~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
-.+++|+.|+|||+.++..++......+-.. ...+..|||++--- =..++...+..+...+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed-~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED-PREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC-CHHHHHHHHHHHHhhc
Confidence 4688999999999875555554333221111 12355788887211 1123444555554433
No 491
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=86.89 E-value=6 Score=46.93 Aligned_cols=134 Identities=13% Similarity=0.142 Sum_probs=80.9
Q ss_pred hcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH-hhcCcEEEEeeCCCCh
Q 002040 502 MSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA-KVMGVRCVPVYGGSGV 580 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~-~~~~~~~~~~~gg~~~ 580 (976)
+..+-.+..-|--.|||+ |+.|++..++.. -.|-.+.+++.-+..+.-++.++..-+ .+++-..+.-.
T Consensus 200 FKQkaTVFLVPRRHGKTW-f~VpiIsllL~s-----~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~----- 268 (668)
T PHA03372 200 FKQKATVFLVPRRHGKTW-FIIPIISFLLKN-----IIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN----- 268 (668)
T ss_pred hhccceEEEecccCCcee-hHHHHHHHHHHh-----hcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee-----
Confidence 344556667799999997 588888887763 247789999999999888888776433 33333222111
Q ss_pred HHHHHHHhcCCeEEEeCchhHHHH--HHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC-CCCcEEEEecc
Q 002040 581 AQQISELKRGTEIVVCTPGRMIDI--LCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTVLFSAT 657 (976)
Q Consensus 581 ~~~~~~l~~~~~Iiv~Tp~~L~~~--l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~-~~~q~i~~SAT 657 (976)
.+.-|.+.-|+.=... +...+.....-+.+.+++|||||-+- ...+..|+-.+. .+.++|+.|.|
T Consensus 269 --------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~----~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 269 --------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK----KDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC----HHHHHHhhhhhcccCceEEEEeCC
Confidence 1223444444321110 11011111234568899999999442 334555655543 56789999988
Q ss_pred C
Q 002040 658 F 658 (976)
Q Consensus 658 ~ 658 (976)
-
T Consensus 337 N 337 (668)
T PHA03372 337 N 337 (668)
T ss_pred C
Confidence 4
No 492
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=86.86 E-value=0.7 Score=54.74 Aligned_cols=56 Identities=27% Similarity=0.387 Sum_probs=37.7
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEe
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 574 (976)
.+++++|+||||||..+++|.+.. . ..-+||+=|--+|+......+++ .|..|.++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~~----~G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRKK----RGYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHHH----CCCEEEEe
Confidence 479999999999999999997632 1 11467777887886655443333 34444444
No 493
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=86.68 E-value=0.62 Score=53.62 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=36.3
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEe
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 574 (976)
+++++|+||||||.++++|.+.. . +..+||+=|--++........+ ..|..|.++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~---~-------~~s~vv~D~Kge~~~~t~~~r~----~~G~~V~v~ 55 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT---W-------PGSVVVLDPKGENFELTSEHRR----ALGRKVFVF 55 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc---C-------CCCEEEEccchhHHHHHHHHHH----HcCCeEEEE
Confidence 47899999999999988886632 1 2346777788777654433332 245555544
No 494
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.62 E-value=1.7 Score=49.10 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=19.5
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
.+..++++||||||||+. +..++.++.
T Consensus 121 ~~g~ili~G~tGSGKTT~-l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTT-LASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHH-HHHHHHhhC
Confidence 356789999999999986 444555543
No 495
>PRK05595 replicative DNA helicase; Provisional
Probab=86.61 E-value=2.3 Score=49.98 Aligned_cols=157 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc---cCHHHHHHHHHHHHH
Q 002040 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA---PTRELVQQIHSDIRK 562 (976)
Q Consensus 486 ~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~---Ptr~La~Q~~~~~~~ 562 (976)
|+...++.--..+.-+..|.-+||.|.||+|||..++-.+......+ |..|+|+. +...|+..+
T Consensus 183 gi~tg~~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~-------g~~vl~fSlEms~~~l~~R~------ 249 (444)
T PRK05595 183 GVASGFRELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALRE-------GKSVAIFSLEMSKEQLAYKL------ 249 (444)
T ss_pred cccCChHHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHc-------CCcEEEEecCCCHHHHHHHH------
Q ss_pred HHhhcCcEEEEeeCCCChHHHH-------HHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCc
Q 002040 563 FAKVMGVRCVPVYGGSGVAQQI-------SELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE 635 (976)
Q Consensus 563 ~~~~~~~~~~~~~gg~~~~~~~-------~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~ 635 (976)
++...++....+..|.-....+ ..+....-.|.-+++.-+..+.........-..+++||||=.|.|...+..
T Consensus 250 ~a~~~~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~~ 329 (444)
T PRK05595 250 LCSEANVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKGS 329 (444)
T ss_pred HHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCCC
Q ss_pred ----hHHHHHHHhcCC-----CCcEEEEe
Q 002040 636 ----PQITRIVQNIRP-----DRQTVLFS 655 (976)
Q Consensus 636 ----~~i~~il~~~~~-----~~q~i~~S 655 (976)
..+..|...++. ++.+|++|
T Consensus 330 ~~r~~~v~~is~~LK~lAke~~i~vi~ls 358 (444)
T PRK05595 330 ESRQQEVSEISRSIKALAKEMECPVIALS 358 (444)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCeEEEee
No 496
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=86.53 E-value=0.84 Score=49.78 Aligned_cols=149 Identities=17% Similarity=0.205 Sum_probs=0.0
Q ss_pred HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCC-------------CeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 501 IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG-------------PVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~-------------~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
|..|.-+.|+|++|+|||+ ++-++.-+........-++ ..++|.-...-...-+.+.+.-+....
T Consensus 27 I~~Ge~~~IvG~nGsGKST--Ll~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~~~ 104 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKST--LLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWS 104 (275)
T ss_pred EcCCCEEEEECCCCCCHHH--HHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHhhhccCCC
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEE------eCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHH
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVV------CTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv------~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~i 641 (976)
.-.+..+.........+..+..+.+..| .+.|....+.... ..+.+-.++|+||.-.-+|......+..+
T Consensus 105 ~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaR----all~~p~illlDEpts~LD~~~~~~l~~~ 180 (275)
T cd03289 105 DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLAR----SVLSKAKILLLDEPSAHLDPITYQVIRKT 180 (275)
T ss_pred HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHH----HHhcCCCEEEEECccccCCHHHHHHHHHH
Q ss_pred HHhcCCCCcEEEEe
Q 002040 642 VQNIRPDRQTVLFS 655 (976)
Q Consensus 642 l~~~~~~~q~i~~S 655 (976)
+..+...+.+|+.|
T Consensus 181 l~~~~~~~tii~is 194 (275)
T cd03289 181 LKQAFADCTVILSE 194 (275)
T ss_pred HHHhcCCCEEEEEE
No 497
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.51 E-value=4.5 Score=44.97 Aligned_cols=132 Identities=15% Similarity=0.147 Sum_probs=0.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE 586 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ 586 (976)
++++|-.|+|||++..-.++.+ ...|.+++++|--.--|... ..++..+...++.+...|...........
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~--------kkkG~K~~LvcaDTFRagAf-DQLkqnA~k~~iP~ygsyte~dpv~ia~e 174 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYY--------KKKGYKVALVCADTFRAGAF-DQLKQNATKARVPFYGSYTEADPVKIASE 174 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHH--------HhcCCceeEEeecccccchH-HHHHHHhHhhCCeeEecccccchHHHHHH
Q ss_pred HhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc-cccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHH
Q 002040 587 LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEIL 665 (976)
Q Consensus 587 l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah-~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l 665 (976)
--.. +.-.+|++||+|=.- +-.+.+.-..+..+...+.|+.-++++-|++....+..
T Consensus 175 gv~~----------------------fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 175 GVDR----------------------FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred HHHH----------------------HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHH
Q ss_pred HHHH
Q 002040 666 ARKV 669 (976)
Q Consensus 666 ~~~~ 669 (976)
+..|
T Consensus 233 a~aF 236 (483)
T KOG0780|consen 233 ARAF 236 (483)
T ss_pred HHHH
No 498
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=86.40 E-value=1.4 Score=52.04 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCC--EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 482 IRKLNYEKPMPIQAQALPVIMSGRD--CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 482 l~~~~~~~p~~~Q~~~i~~il~g~d--~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
|..+||. +.|.+.|..++.... ++++||||||||+. +..++..+... +..++.+
T Consensus 221 l~~Lg~~---~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l~~~-------~~~iiTi 276 (486)
T TIGR02533 221 LETLGMS---PELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRLNTP-------ERNILTV 276 (486)
T ss_pred HHHcCCC---HHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhccCCC-------CCcEEEE
No 499
>PRK14701 reverse gyrase; Provisional
Probab=86.37 E-value=2.9 Score=56.27 Aligned_cols=81 Identities=7% Similarity=0.117 Sum_probs=0.0
Q ss_pred EEEecCcchHHHHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHH------CCCCceeccCCCCHHHHHHHHHHhcc
Q 002040 691 LVEVRPESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLK------HGYPCLSLHGAKDQTDRESTISDFKS 762 (976)
Q Consensus 691 ~~~~~~~~~k~~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~------~~~~~~~lhg~~~~~~R~~~~~~F~~ 762 (976)
.+.......|.. +...+.... .+.++||.+||+.-+.+++..|.. .++.+..+||+++..++..++..+.+
T Consensus 98 li~APTGsGKTl-~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~ 176 (1638)
T PRK14701 98 SIVAPTGMGKST-FGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN 176 (1638)
T ss_pred EEEEcCCCCHHH-HHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc
Q ss_pred CCccEEEecC
Q 002040 763 NVCNLLIATS 772 (976)
Q Consensus 763 g~~~vLVaT~ 772 (976)
|..+|||+|+
T Consensus 177 g~~dILV~TP 186 (1638)
T PRK14701 177 GDFDILVTTA 186 (1638)
T ss_pred CCCCEEEECC
No 500
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.18 E-value=3.3 Score=48.67 Aligned_cols=144 Identities=14% Similarity=0.227 Sum_probs=0.0
Q ss_pred eccCCCCCcccccccCCCCHHHHHHHHH--cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCC
Q 002040 457 IHGKDVPKPIKTWHQTGLTSKIMETIRK--LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (976)
Q Consensus 457 ~~g~~~p~pi~~~~~~~l~~~l~~~l~~--~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~ 534 (976)
+.+...|.+-.+|.++|=-...+..|.. ..+..|-.++.-.+.. -+.+|+.||+|+|||..
T Consensus 177 ~~~~~~~~snv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~P---prGvLlHGPPGCGKT~l-------------- 239 (802)
T KOG0733|consen 177 VEGLEFPESNVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRP---PRGVLLHGPPGCGKTSL-------------- 239 (802)
T ss_pred hcccCCCCCCcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCC---CCceeeeCCCCccHHHH--------------
Q ss_pred CCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccc
Q 002040 535 VAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITN 614 (976)
Q Consensus 535 ~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~ 614 (976)
...++..+++.+..+.+-..+ ..|.=-|-..+..++.. ..
T Consensus 240 -------------------------A~AiAgel~vPf~~isApeiv----------SGvSGESEkkiRelF~~-----A~ 279 (802)
T KOG0733|consen 240 -------------------------ANAIAGELGVPFLSISAPEIV----------SGVSGESEKKIRELFDQ-----AK 279 (802)
T ss_pred -------------------------HHHHhhhcCCceEeecchhhh----------cccCcccHHHHHHHHHH-----Hh
Q ss_pred cCCceEEEecCcccccccC----------CchHHHHHHHhcCCC----CcEEEEecc
Q 002040 615 LRRVTYLVMDEADRMFDMG----------FEPQITRIVQNIRPD----RQTVLFSAT 657 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~----------f~~~i~~il~~~~~~----~q~i~~SAT 657 (976)
-...++|+|||+|.+...- ...++...+..+... ..+|+..||
T Consensus 280 ~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgAT 336 (802)
T KOG0733|consen 280 SNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGAT 336 (802)
T ss_pred ccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecC
Done!