Query 002040
Match_columns 976
No_of_seqs 826 out of 5236
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 09:49:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.6E-63 5.6E-68 579.9 46.9 389 453-846 42-433 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2E-57 6.7E-62 526.8 46.0 392 455-849 3-411 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 2.6E-54 8.8E-59 499.7 39.0 373 461-842 31-404 (410)
4 3eiq_A Eukaryotic initiation f 100.0 1.9E-53 6.4E-58 492.8 36.6 379 460-847 33-413 (414)
5 1s2m_A Putative ATP-dependent 100.0 1.5E-52 5.2E-57 483.1 39.6 371 463-843 17-387 (400)
6 1xti_A Probable ATP-dependent 100.0 2.4E-51 8.1E-56 471.4 39.4 367 467-842 8-379 (391)
7 1hv8_A Putative ATP-dependent 100.0 2E-50 6.8E-55 459.1 42.1 357 466-838 5-362 (367)
8 3fht_A ATP-dependent RNA helic 100.0 8.4E-51 2.9E-55 470.1 39.6 369 462-841 20-400 (412)
9 3pey_A ATP-dependent RNA helic 100.0 1.1E-50 3.8E-55 466.0 40.2 358 464-834 2-370 (395)
10 1fuu_A Yeast initiation factor 100.0 1.9E-52 6.6E-57 480.9 23.8 374 462-845 16-390 (394)
11 3sqw_A ATP-dependent RNA helic 100.0 1.1E-50 3.9E-55 489.4 37.7 358 474-834 28-411 (579)
12 3i5x_A ATP-dependent RNA helic 100.0 5.6E-50 1.9E-54 482.7 38.6 358 474-834 79-462 (563)
13 3fmp_B ATP-dependent RNA helic 100.0 7E-52 2.4E-56 489.1 20.4 366 464-840 89-466 (479)
14 2z0m_A 337AA long hypothetical 100.0 8.1E-48 2.8E-52 432.4 36.8 334 474-833 1-334 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.4E-47 4.7E-52 458.8 34.9 346 463-828 15-381 (591)
16 3fho_A ATP-dependent RNA helic 100.0 2E-48 6.9E-53 461.5 20.7 368 462-842 114-492 (508)
17 3oiy_A Reverse gyrase helicase 100.0 4.3E-46 1.5E-50 431.4 30.5 324 479-834 11-376 (414)
18 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-45 9.5E-50 434.6 37.2 341 467-831 2-353 (523)
19 1tf5_A Preprotein translocase 100.0 4.5E-45 1.5E-49 435.6 32.0 373 424-823 22-547 (844)
20 3l9o_A ATP-dependent RNA helic 100.0 8.5E-45 2.9E-49 460.8 19.9 329 468-821 163-597 (1108)
21 4a2p_A RIG-I, retinoic acid in 100.0 3.2E-43 1.1E-47 423.0 30.8 331 486-823 4-510 (556)
22 2va8_A SSO2462, SKI2-type heli 100.0 2.2E-42 7.6E-47 427.5 35.4 336 466-822 7-409 (715)
23 3tbk_A RIG-I helicase domain; 100.0 1.2E-42 4.2E-47 417.6 31.0 331 488-826 3-512 (555)
24 2fsf_A Preprotein translocase 100.0 1.3E-42 4.4E-47 412.9 27.5 368 435-825 24-587 (853)
25 2ykg_A Probable ATP-dependent 100.0 2.5E-43 8.5E-48 435.6 21.2 338 480-824 4-519 (696)
26 2zj8_A DNA helicase, putative 100.0 1.8E-42 6E-47 428.3 28.0 332 468-822 2-388 (720)
27 4a2q_A RIG-I, retinoic acid in 100.0 5.5E-42 1.9E-46 428.0 31.4 331 485-822 244-750 (797)
28 4ddu_A Reverse gyrase; topoiso 100.0 5.4E-42 1.8E-46 435.0 30.7 373 484-890 74-562 (1104)
29 2p6r_A Afuhel308 helicase; pro 100.0 1.1E-42 3.8E-47 428.8 21.6 331 468-822 2-389 (702)
30 2eyq_A TRCF, transcription-rep 100.0 5.2E-41 1.8E-45 428.8 34.9 370 472-895 586-969 (1151)
31 1nkt_A Preprotein translocase 100.0 6.9E-41 2.4E-45 398.1 32.1 326 484-824 107-620 (922)
32 1wp9_A ATP-dependent RNA helic 100.0 8.3E-41 2.9E-45 394.0 32.7 321 489-822 9-476 (494)
33 1gku_B Reverse gyrase, TOP-RG; 100.0 2.7E-42 9.4E-47 438.3 21.4 320 484-835 53-468 (1054)
34 1gm5_A RECG; helicase, replica 100.0 2.7E-42 9.2E-47 421.1 19.6 318 476-820 356-696 (780)
35 2xgj_A ATP-dependent RNA helic 100.0 3.1E-40 1.1E-44 415.5 34.9 312 484-821 82-499 (1010)
36 4a2w_A RIG-I, retinoic acid in 100.0 8.7E-41 3E-45 421.3 29.3 331 485-822 244-750 (936)
37 4gl2_A Interferon-induced heli 100.0 5E-41 1.7E-45 415.3 19.7 327 488-820 6-517 (699)
38 4a4z_A Antiviral helicase SKI2 100.0 4.7E-39 1.6E-43 405.0 30.6 308 485-819 36-490 (997)
39 2whx_A Serine protease/ntpase/ 100.0 3.1E-40 1.1E-44 396.2 8.7 309 487-842 169-502 (618)
40 3fe2_A Probable ATP-dependent 100.0 1.5E-37 5.2E-42 332.2 28.4 238 441-681 3-240 (242)
41 4f92_B U5 small nuclear ribonu 100.0 1.8E-37 6.2E-42 406.6 34.2 341 474-826 911-1313(1724)
42 2xau_A PRE-mRNA-splicing facto 100.0 9.6E-39 3.3E-43 392.7 19.9 338 463-822 68-444 (773)
43 2jlq_A Serine protease subunit 100.0 3.8E-39 1.3E-43 375.7 14.3 309 486-842 1-335 (451)
44 2oca_A DAR protein, ATP-depend 100.0 6.7E-39 2.3E-43 381.3 15.9 311 488-819 112-453 (510)
45 4f92_B U5 small nuclear ribonu 100.0 5.2E-37 1.8E-41 402.3 28.3 339 486-830 76-482 (1724)
46 1yks_A Genome polyprotein [con 100.0 5.1E-38 1.8E-42 364.6 12.3 291 500-842 4-323 (440)
47 2fwr_A DNA repair protein RAD2 100.0 2E-37 6.8E-42 364.9 16.9 293 488-821 92-454 (472)
48 2wv9_A Flavivirin protease NS2 100.0 1.8E-37 6.1E-42 374.5 13.1 310 483-839 204-554 (673)
49 3o8b_A HCV NS3 protease/helica 100.0 7.5E-37 2.6E-41 362.9 15.2 288 490-835 218-532 (666)
50 2z83_A Helicase/nucleoside tri 100.0 5.8E-37 2E-41 357.9 11.4 283 496-829 13-323 (459)
51 2v6i_A RNA helicase; membrane, 100.0 7.1E-35 2.4E-39 337.5 23.0 269 503-818 1-288 (431)
52 1wrb_A DJVLGB; RNA helicase, D 100.0 3E-34 1E-38 308.8 22.3 237 452-691 6-252 (253)
53 3h1t_A Type I site-specific re 100.0 2.8E-34 9.5E-39 347.4 22.2 308 488-810 177-545 (590)
54 3dmq_A RNA polymerase-associat 100.0 4E-34 1.4E-38 361.0 24.1 332 488-833 152-625 (968)
55 3iuy_A Probable ATP-dependent 100.0 1.1E-33 3.9E-38 299.4 23.1 217 458-678 10-228 (228)
56 3rc3_A ATP-dependent RNA helic 100.0 7.7E-34 2.6E-38 341.6 20.5 280 494-820 145-444 (677)
57 3ber_A Probable ATP-dependent 100.0 8.4E-33 2.9E-37 296.4 25.6 210 463-679 39-248 (249)
58 1z63_A Helicase of the SNF2/RA 100.0 1.1E-32 3.9E-37 326.8 29.1 309 488-820 36-452 (500)
59 3dkp_A Probable ATP-dependent 100.0 3.8E-33 1.3E-37 298.7 21.4 232 445-681 3-243 (245)
60 3bor_A Human initiation factor 100.0 5.9E-33 2E-37 295.6 22.2 213 459-679 22-235 (237)
61 3fmo_B ATP-dependent RNA helic 100.0 5.6E-33 1.9E-37 305.8 22.4 215 455-679 77-298 (300)
62 3jux_A Protein translocase sub 100.0 1.2E-31 4.2E-36 311.9 34.5 321 485-823 72-589 (822)
63 2pl3_A Probable ATP-dependent 100.0 2.6E-32 8.9E-37 290.5 26.2 229 443-680 6-234 (236)
64 2oxc_A Probable ATP-dependent 100.0 2.3E-32 8E-37 289.6 23.4 211 459-678 16-228 (230)
65 1qde_A EIF4A, translation init 100.0 3.5E-32 1.2E-36 287.0 23.3 213 460-681 7-219 (224)
66 1q0u_A Bstdead; DEAD protein, 100.0 1.6E-32 5.6E-37 288.6 20.3 207 465-679 2-212 (219)
67 3mwy_W Chromo domain-containin 100.0 1.5E-31 5.1E-36 332.9 32.3 373 427-821 177-684 (800)
68 1vec_A ATP-dependent RNA helic 100.0 9.5E-32 3.3E-36 279.7 25.1 202 467-676 3-205 (206)
69 1z3i_X Similar to RAD54-like; 100.0 1.6E-30 5.4E-35 315.8 36.6 322 489-821 55-528 (644)
70 2gxq_A Heat resistant RNA depe 100.0 2.6E-31 9E-36 276.6 25.3 204 468-678 2-205 (207)
71 3ly5_A ATP-dependent RNA helic 100.0 1.8E-31 6.2E-36 288.3 23.4 205 467-674 52-258 (262)
72 1t6n_A Probable ATP-dependent 100.0 3.6E-31 1.2E-35 278.5 21.9 207 463-677 10-219 (220)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.9E-30 6.6E-35 324.4 26.4 313 488-819 270-707 (1038)
74 2ipc_A Preprotein translocase 100.0 1E-27 3.4E-32 283.9 35.6 322 484-823 75-700 (997)
75 1c4o_A DNA nucleotide excision 100.0 6E-27 2E-31 284.0 30.7 176 647-831 379-560 (664)
76 2p6n_A ATP-dependent RNA helic 99.9 1.5E-27 5E-32 244.3 16.0 181 666-848 8-189 (191)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.4E-26 4.8E-31 236.0 18.7 168 682-849 14-181 (185)
78 2d7d_A Uvrabc system protein B 99.9 1E-25 3.6E-30 273.0 29.6 175 647-830 385-565 (661)
79 2hjv_A ATP-dependent RNA helic 99.9 6.5E-25 2.2E-29 219.1 18.3 153 683-836 5-157 (163)
80 1t5i_A C_terminal domain of A 99.9 6E-25 2.1E-29 221.2 15.3 158 686-844 4-162 (172)
81 1fuk_A Eukaryotic initiation f 99.9 5.8E-25 2E-29 220.0 12.4 156 687-843 3-159 (165)
82 2rb4_A ATP-dependent RNA helic 99.9 2.4E-24 8.2E-29 217.7 16.7 154 684-838 4-164 (175)
83 3eaq_A Heat resistant RNA depe 99.9 1.1E-23 3.9E-28 219.4 19.3 148 689-837 7-154 (212)
84 3i32_A Heat resistant RNA depe 99.9 3.5E-23 1.2E-27 226.0 19.3 150 687-837 2-151 (300)
85 2yjt_D ATP-dependent RNA helic 99.8 4.2E-24 1.4E-28 214.8 0.0 148 687-835 3-151 (170)
86 3b6e_A Interferon-induced heli 99.9 1.9E-22 6.4E-27 210.8 12.0 170 485-657 29-216 (216)
87 2vl7_A XPD; helicase, unknown 99.9 5.3E-21 1.8E-25 227.3 22.2 303 485-819 4-519 (540)
88 3crv_A XPD/RAD3 related DNA he 99.8 2E-19 7E-24 214.5 30.6 309 489-820 3-530 (551)
89 3llm_A ATP-dependent RNA helic 99.8 5.5E-21 1.9E-25 202.7 14.6 177 482-674 54-232 (235)
90 1rif_A DAR protein, DNA helica 99.8 4.9E-21 1.7E-25 209.0 8.7 155 488-662 112-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 4E-17 1.4E-21 196.2 28.0 317 489-819 3-582 (620)
92 1z5z_A Helicase of the SNF2/RA 99.7 3.4E-18 1.2E-22 184.3 13.1 127 695-821 92-224 (271)
93 2fz4_A DNA repair protein RAD2 99.7 1E-17 3.4E-22 177.5 13.8 139 488-661 92-231 (237)
94 1w36_D RECD, exodeoxyribonucle 98.7 2.3E-08 7.7E-13 120.0 10.5 146 491-657 151-298 (608)
95 2gk6_A Regulator of nonsense t 98.3 1.3E-05 4.6E-10 96.4 20.1 69 487-562 178-246 (624)
96 4b3f_X DNA-binding protein smu 98.3 3.7E-05 1.3E-09 93.1 22.2 66 489-562 189-255 (646)
97 3hgt_A HDA1 complex subunit 3; 98.3 5.3E-06 1.8E-10 89.4 12.9 121 697-822 107-238 (328)
98 3lfu_A DNA helicase II; SF1 he 98.2 5.7E-05 1.9E-09 91.7 22.4 72 488-565 8-79 (647)
99 3upu_A ATP-dependent DNA helic 98.2 3.9E-05 1.3E-09 88.9 19.6 70 483-559 19-93 (459)
100 2xzl_A ATP-dependent helicase 98.2 5.8E-05 2E-09 92.9 21.9 70 487-563 358-427 (802)
101 2wjy_A Regulator of nonsense t 98.2 0.00014 4.7E-09 89.4 24.1 69 487-562 354-422 (800)
102 3e1s_A Exodeoxyribonuclease V, 98.0 1.1E-05 3.6E-10 95.8 10.4 127 489-657 189-315 (574)
103 1uaa_A REP helicase, protein ( 97.4 0.00088 3E-08 81.5 14.9 71 489-565 2-72 (673)
104 1pjr_A PCRA; DNA repair, DNA r 97.3 0.0058 2E-07 74.7 20.4 80 488-573 10-91 (724)
105 2o0j_A Terminase, DNA packagin 97.3 0.0018 6.2E-08 72.2 14.1 74 489-568 163-236 (385)
106 3cpe_A Terminase, DNA packagin 96.7 0.013 4.6E-07 69.7 14.9 74 489-568 163-236 (592)
107 2orw_A Thymidine kinase; TMTK, 96.6 0.0068 2.3E-07 60.5 10.0 39 503-549 2-40 (184)
108 3ec2_A DNA replication protein 96.6 0.0061 2.1E-07 60.4 9.6 31 491-521 16-55 (180)
109 1xx6_A Thymidine kinase; NESG, 96.5 0.0055 1.9E-07 61.5 8.5 38 504-549 8-45 (191)
110 3kl4_A SRP54, signal recogniti 96.1 0.022 7.5E-07 64.5 11.5 130 505-668 98-233 (433)
111 2j9r_A Thymidine kinase; TK1, 96.0 0.0098 3.4E-07 60.3 7.2 39 504-550 28-66 (214)
112 2b8t_A Thymidine kinase; deoxy 96.0 0.018 6.2E-07 59.2 9.1 40 503-550 11-50 (223)
113 3vkw_A Replicase large subunit 95.7 0.0089 3E-07 67.5 5.9 107 506-657 163-269 (446)
114 3e2i_A Thymidine kinase; Zn-bi 95.7 0.012 4E-07 59.7 6.1 40 503-550 27-66 (219)
115 3dm5_A SRP54, signal recogniti 95.7 0.056 1.9E-06 61.1 12.1 129 506-667 102-233 (443)
116 3te6_A Regulatory protein SIR3 95.6 0.061 2.1E-06 58.3 11.8 27 504-531 45-71 (318)
117 1w4r_A Thymidine kinase; type 95.6 0.021 7.1E-07 57.0 7.4 39 503-549 19-57 (195)
118 2kjq_A DNAA-related protein; s 95.6 0.0081 2.8E-07 57.7 4.3 18 503-520 35-52 (149)
119 2w58_A DNAI, primosome compone 95.5 0.084 2.9E-06 53.0 11.9 25 505-530 55-79 (202)
120 2qgz_A Helicase loader, putati 95.5 0.045 1.5E-06 59.3 10.4 19 504-522 152-170 (308)
121 2orv_A Thymidine kinase; TP4A 95.5 0.046 1.6E-06 55.9 9.6 40 503-550 18-57 (234)
122 2p65_A Hypothetical protein PF 95.5 0.024 8.3E-07 55.8 7.5 25 504-529 43-67 (187)
123 1l8q_A Chromosomal replication 95.5 0.047 1.6E-06 59.6 10.4 25 504-529 37-61 (324)
124 2zpa_A Uncharacterized protein 95.4 0.023 7.8E-07 67.4 7.8 113 489-659 175-289 (671)
125 1jbk_A CLPB protein; beta barr 95.2 0.22 7.6E-06 48.8 13.7 25 504-529 43-67 (195)
126 3u4q_A ATP-dependent helicase/ 95.2 0.035 1.2E-06 72.0 9.4 128 489-627 10-137 (1232)
127 1d2n_A N-ethylmaleimide-sensit 94.9 0.19 6.4E-06 53.2 12.8 18 505-522 65-82 (272)
128 4b4t_M 26S protease regulatory 94.9 0.018 6.3E-07 65.1 4.8 55 463-520 174-231 (434)
129 1a5t_A Delta prime, HOLB; zinc 94.8 0.059 2E-06 59.2 8.6 39 491-530 4-49 (334)
130 3h4m_A Proteasome-activating n 94.8 0.021 7.3E-07 61.0 4.9 55 464-521 11-68 (285)
131 2z4s_A Chromosomal replication 94.7 0.099 3.4E-06 59.7 10.6 18 504-521 130-147 (440)
132 4b4t_J 26S protease regulatory 94.6 0.027 9.3E-07 62.8 5.4 53 465-520 143-198 (405)
133 1gm5_A RECG; helicase, replica 94.5 0.098 3.3E-06 63.9 10.5 94 698-791 400-499 (780)
134 1g5t_A COB(I)alamin adenosyltr 94.5 0.26 9E-06 49.1 11.6 137 504-666 28-171 (196)
135 3cf0_A Transitional endoplasmi 94.4 0.057 2E-06 58.3 7.1 54 465-521 10-66 (301)
136 3n70_A Transport activator; si 94.2 0.11 3.6E-06 49.3 7.9 20 502-521 22-41 (145)
137 2chg_A Replication factor C sm 93.9 0.33 1.1E-05 48.8 11.5 40 616-656 101-140 (226)
138 4b4t_L 26S protease subunit RP 93.9 0.043 1.5E-06 62.1 5.0 54 464-520 175-231 (437)
139 2qby_B CDC6 homolog 3, cell di 93.8 0.16 5.5E-06 56.5 9.8 24 505-529 46-69 (384)
140 2v1u_A Cell division control p 93.8 0.16 5.4E-06 56.5 9.7 18 504-521 44-61 (387)
141 3bos_A Putative DNA replicatio 93.8 0.089 3E-06 54.1 7.0 19 503-521 51-69 (242)
142 3eie_A Vacuolar protein sortin 93.8 0.21 7.3E-06 54.3 10.4 51 465-521 13-68 (322)
143 4b4t_I 26S protease regulatory 93.6 0.065 2.2E-06 60.0 5.9 54 464-520 176-232 (437)
144 4b4t_K 26S protease regulatory 93.6 0.055 1.9E-06 61.1 5.3 54 464-520 166-222 (428)
145 3syl_A Protein CBBX; photosynt 93.6 0.058 2E-06 58.2 5.4 17 505-521 68-84 (309)
146 3u61_B DNA polymerase accessor 93.3 0.092 3.1E-06 57.2 6.4 40 617-656 105-144 (324)
147 3oiy_A Reverse gyrase helicase 93.2 0.26 8.7E-06 55.6 10.0 77 712-788 62-145 (414)
148 1njg_A DNA polymerase III subu 93.1 1 3.4E-05 45.8 13.8 23 506-529 47-69 (250)
149 3vfd_A Spastin; ATPase, microt 93.1 0.28 9.7E-06 54.9 10.2 18 504-521 148-165 (389)
150 1fnn_A CDC6P, cell division co 93.0 0.13 4.4E-06 57.3 7.1 23 506-529 46-68 (389)
151 1sxj_E Activator 1 40 kDa subu 93.0 0.17 5.7E-06 55.8 7.9 42 616-658 133-174 (354)
152 3pfi_A Holliday junction ATP-d 92.7 0.23 7.9E-06 54.3 8.5 17 505-521 56-72 (338)
153 4b4t_H 26S protease regulatory 92.6 0.1 3.4E-06 59.1 5.3 54 464-520 203-259 (467)
154 3b9p_A CG5977-PA, isoform A; A 92.5 0.68 2.3E-05 49.4 11.8 18 504-521 54-71 (297)
155 1xwi_A SKD1 protein; VPS4B, AA 92.5 0.94 3.2E-05 49.1 13.0 51 465-521 7-62 (322)
156 2qby_A CDC6 homolog 1, cell di 92.3 0.21 7E-06 55.5 7.5 25 504-529 45-69 (386)
157 2qp9_X Vacuolar protein sortin 92.1 0.19 6.4E-06 55.6 6.8 18 504-521 84-101 (355)
158 1lv7_A FTSH; alpha/beta domain 91.5 1.4 5E-05 45.7 12.7 18 504-521 45-62 (257)
159 1ls1_A Signal recognition part 91.5 1.1 3.8E-05 47.9 11.9 46 616-661 179-225 (295)
160 2r6a_A DNAB helicase, replicat 91.5 0.62 2.1E-05 53.3 10.6 39 503-548 202-240 (454)
161 1iqp_A RFCS; clamp loader, ext 91.3 0.47 1.6E-05 51.2 8.8 39 616-655 109-147 (327)
162 3pvs_A Replication-associated 91.1 0.45 1.5E-05 54.2 8.7 17 505-521 51-67 (447)
163 3uk6_A RUVB-like 2; hexameric 91.1 1.5 5.1E-05 48.3 12.9 24 505-529 71-94 (368)
164 1jr3_A DNA polymerase III subu 90.9 1.4 4.7E-05 48.5 12.5 23 506-529 40-62 (373)
165 2p6n_A ATP-dependent RNA helic 90.6 1.6 5.4E-05 43.3 11.3 71 540-623 54-128 (191)
166 2qz4_A Paraplegin; AAA+, SPG7, 90.3 1.1 3.8E-05 46.5 10.4 18 504-521 39-56 (262)
167 1ofh_A ATP-dependent HSL prote 90.3 1.1 3.7E-05 47.9 10.6 19 503-521 49-67 (310)
168 1sxj_D Activator 1 41 kDa subu 90.0 0.5 1.7E-05 51.7 7.7 40 616-656 132-171 (353)
169 2w0m_A SSO2452; RECA, SSPF, un 89.9 0.75 2.6E-05 46.7 8.5 22 503-524 22-43 (235)
170 4ddu_A Reverse gyrase; topoiso 89.7 0.57 2E-05 59.6 8.8 77 712-788 119-202 (1104)
171 1hqc_A RUVB; extended AAA-ATPa 89.7 0.67 2.3E-05 50.0 8.3 18 504-521 38-55 (324)
172 1vma_A Cell division protein F 89.7 3 0.0001 44.7 13.3 19 505-523 105-123 (306)
173 3e70_C DPA, signal recognition 89.6 2.1 7E-05 46.5 12.0 52 618-669 212-264 (328)
174 2q6t_A DNAB replication FORK h 89.6 0.48 1.6E-05 54.0 7.3 38 504-548 200-237 (444)
175 2dr3_A UPF0273 protein PH0284; 89.5 1.4 4.8E-05 45.2 10.3 26 503-528 22-47 (247)
176 2zan_A Vacuolar protein sortin 89.4 0.89 3E-05 51.8 9.3 18 504-521 167-184 (444)
177 2eyq_A TRCF, transcription-rep 89.3 0.96 3.3E-05 57.9 10.5 94 695-788 632-731 (1151)
178 2ehv_A Hypothetical protein PH 89.2 0.66 2.3E-05 47.8 7.5 23 503-525 29-51 (251)
179 1sxj_A Activator 1 95 kDa subu 89.2 0.72 2.5E-05 53.7 8.5 41 616-658 147-189 (516)
180 2gno_A DNA polymerase III, gam 88.9 1.5 5E-05 47.2 10.1 40 615-655 80-119 (305)
181 2hjv_A ATP-dependent RNA helic 88.9 1.1 3.7E-05 43.1 8.3 72 540-624 35-110 (163)
182 3lda_A DNA repair protein RAD5 88.8 2.1 7.2E-05 47.8 11.6 19 504-522 178-196 (400)
183 2ffh_A Protein (FFH); SRP54, s 88.7 2.5 8.4E-05 47.6 12.1 20 504-523 98-117 (425)
184 3d8b_A Fidgetin-like protein 1 88.6 0.36 1.2E-05 53.3 5.2 18 504-521 117-134 (357)
185 1nlf_A Regulatory protein REPA 88.5 1.5 5.1E-05 46.3 9.8 26 501-526 27-52 (279)
186 3hu3_A Transitional endoplasmi 88.4 0.5 1.7E-05 54.5 6.3 43 618-660 298-350 (489)
187 1sxj_B Activator 1 37 kDa subu 88.2 0.81 2.8E-05 49.2 7.7 38 617-655 107-144 (323)
188 3t15_A Ribulose bisphosphate c 88.2 0.36 1.2E-05 51.7 4.7 16 505-520 37-52 (293)
189 4a1f_A DNAB helicase, replicat 88.0 0.42 1.4E-05 52.2 5.1 38 503-548 45-82 (338)
190 1qvr_A CLPB protein; coiled co 88.0 0.92 3.2E-05 56.3 8.8 18 504-521 191-208 (854)
191 2ce7_A Cell division protein F 87.7 0.43 1.5E-05 54.7 5.2 17 505-521 50-66 (476)
192 1cr0_A DNA primase/helicase; R 87.7 0.64 2.2E-05 49.7 6.3 22 503-524 34-55 (296)
193 2rb4_A ATP-dependent RNA helic 87.6 1.5 5E-05 42.7 8.4 71 540-623 34-108 (175)
194 1t6n_A Probable ATP-dependent 87.6 3 0.0001 41.9 11.1 71 715-788 83-164 (220)
195 1fuk_A Eukaryotic initiation f 87.0 1.5 5E-05 42.2 7.9 72 540-624 30-105 (165)
196 2cvh_A DNA repair and recombin 87.0 1.2 4.3E-05 44.7 7.8 22 504-525 20-41 (220)
197 3k1j_A LON protease, ATP-depen 86.6 4.1 0.00014 48.3 13.0 24 498-521 54-77 (604)
198 3eaq_A Heat resistant RNA depe 86.4 3.8 0.00013 41.2 11.0 71 540-623 31-105 (212)
199 2yhs_A FTSY, cell division pro 86.4 1.3 4.6E-05 50.5 8.1 17 505-521 294-310 (503)
200 3hjh_A Transcription-repair-co 86.3 1.5 5.2E-05 50.2 8.7 52 503-565 13-64 (483)
201 2xxa_A Signal recognition part 86.3 2.9 9.9E-05 47.2 10.9 57 506-572 102-160 (433)
202 2jgn_A DBX, DDX3, ATP-dependen 86.0 1.8 6.3E-05 42.5 8.1 71 540-623 46-120 (185)
203 2v1x_A ATP-dependent DNA helic 85.7 1.8 6.2E-05 51.1 9.2 60 713-772 83-144 (591)
204 3cmu_A Protein RECA, recombina 85.4 1 3.5E-05 59.9 7.5 44 498-549 1415-1464(2050)
205 3ber_A Probable ATP-dependent 85.3 2.9 9.9E-05 43.2 9.7 71 714-788 111-192 (249)
206 1w5s_A Origin recognition comp 85.2 1.7 5.7E-05 48.5 8.3 17 505-521 51-69 (412)
207 2v3c_C SRP54, signal recogniti 85.0 0.92 3.1E-05 51.3 6.0 21 505-525 100-120 (432)
208 1t5i_A C_terminal domain of A 84.7 1.6 5.4E-05 42.4 6.8 71 540-623 31-105 (172)
209 1oyw_A RECQ helicase, ATP-depe 84.6 3.3 0.00011 48.1 10.7 76 713-788 64-145 (523)
210 1j8m_F SRP54, signal recogniti 84.5 4 0.00014 43.5 10.5 20 504-523 98-117 (297)
211 3fe2_A Probable ATP-dependent 84.5 5.2 0.00018 40.9 11.2 71 714-788 102-182 (242)
212 2zts_A Putative uncharacterize 84.4 0.69 2.4E-05 47.7 4.3 50 504-561 30-79 (251)
213 1um8_A ATP-dependent CLP prote 84.4 1.1 3.9E-05 49.6 6.4 19 503-521 71-89 (376)
214 2j37_W Signal recognition part 83.9 6.2 0.00021 45.4 12.3 57 506-573 103-161 (504)
215 3i5x_A ATP-dependent RNA helic 83.9 5.5 0.00019 46.5 12.4 96 515-625 319-418 (563)
216 1xp8_A RECA protein, recombina 83.5 2.2 7.5E-05 47.1 8.0 38 504-549 74-111 (366)
217 3cf2_A TER ATPase, transitiona 83.4 1.3 4.3E-05 54.0 6.5 55 463-520 470-527 (806)
218 2fna_A Conserved hypothetical 83.0 17 0.00059 39.0 15.3 16 505-520 31-46 (357)
219 1r6b_X CLPA protein; AAA+, N-t 82.9 2.6 8.9E-05 51.5 9.3 19 503-521 206-224 (758)
220 2pl3_A Probable ATP-dependent 82.4 4.7 0.00016 41.0 9.8 70 714-788 97-177 (236)
221 3bh0_A DNAB-like replicative h 82.3 1 3.6E-05 48.6 4.8 50 503-561 67-116 (315)
222 2oxc_A Probable ATP-dependent 82.3 2.7 9.2E-05 42.8 7.8 70 714-788 92-172 (230)
223 1n0w_A DNA repair protein RAD5 82.3 1.9 6.4E-05 44.1 6.6 24 503-526 23-46 (243)
224 2i4i_A ATP-dependent RNA helic 82.2 4.6 0.00016 44.9 10.4 72 539-623 275-350 (417)
225 3sqw_A ATP-dependent RNA helic 82.0 7.3 0.00025 45.7 12.5 78 539-626 287-368 (579)
226 3i32_A Heat resistant RNA depe 81.5 5.3 0.00018 42.6 10.0 71 540-623 28-102 (300)
227 3cf2_A TER ATPase, transitiona 81.4 1 3.5E-05 54.8 4.7 16 505-520 239-254 (806)
228 2px0_A Flagellar biosynthesis 81.4 1.5 5.2E-05 46.8 5.6 23 503-525 104-126 (296)
229 1wrb_A DJVLGB; RNA helicase, D 81.4 11 0.00039 38.5 12.4 70 715-788 101-180 (253)
230 2z43_A DNA repair and recombin 81.4 3.1 0.0001 45.0 8.2 45 503-549 106-150 (324)
231 3co5_A Putative two-component 81.3 1.1 3.6E-05 42.2 3.9 21 500-520 23-43 (143)
232 3bgw_A DNAB-like replicative h 81.1 1.6 5.5E-05 49.5 6.0 37 504-548 197-233 (444)
233 3hr8_A Protein RECA; alpha and 80.5 1.3 4.5E-05 48.5 4.8 39 504-550 61-99 (356)
234 3bor_A Human initiation factor 80.1 2.8 9.4E-05 42.9 7.0 72 714-788 98-179 (237)
235 3iuy_A Probable ATP-dependent 80.0 3.3 0.00011 41.9 7.5 72 713-788 93-173 (228)
236 1vec_A ATP-dependent RNA helic 80.0 4.5 0.00015 40.0 8.4 71 714-788 71-152 (206)
237 2gxq_A Heat resistant RNA depe 79.6 8.7 0.0003 37.8 10.4 71 714-788 72-150 (207)
238 1xti_A Probable ATP-dependent 79.6 4.4 0.00015 44.5 9.0 72 714-788 76-158 (391)
239 3pxi_A Negative regulator of g 78.6 6 0.00021 48.2 10.4 16 506-521 523-538 (758)
240 3m6a_A ATP-dependent protease 78.0 2.7 9.1E-05 49.1 6.7 19 503-521 107-125 (543)
241 2eyu_A Twitching motility prot 77.8 1.1 3.8E-05 47.0 3.0 20 501-520 22-41 (261)
242 3h75_A Periplasmic sugar-bindi 77.1 79 0.0027 33.7 18.2 183 540-740 3-230 (350)
243 1v5w_A DMC1, meiotic recombina 76.7 3.3 0.00011 45.2 6.6 44 504-549 122-165 (343)
244 4ag6_A VIRB4 ATPase, type IV s 76.5 2.7 9.4E-05 46.7 6.0 41 503-551 34-74 (392)
245 1pzn_A RAD51, DNA repair and r 75.9 3.7 0.00013 44.9 6.8 27 497-523 119-150 (349)
246 1rj9_A FTSY, signal recognitio 75.7 6.2 0.00021 42.2 8.3 18 504-521 102-119 (304)
247 2dhr_A FTSH; AAA+ protein, hex 75.7 3.3 0.00011 47.6 6.4 17 505-521 65-81 (499)
248 3cmu_A Protein RECA, recombina 75.4 2.7 9.1E-05 56.0 6.2 46 503-557 1080-1125(2050)
249 1hv8_A Putative ATP-dependent 75.1 7 0.00024 42.3 8.8 73 539-624 237-313 (367)
250 1zu4_A FTSY; GTPase, signal re 75.0 8.9 0.0003 41.3 9.4 20 504-523 105-124 (320)
251 1ypw_A Transitional endoplasmi 74.4 9.6 0.00033 46.7 10.6 18 503-520 237-254 (806)
252 3ly5_A ATP-dependent RNA helic 74.4 11 0.00038 39.0 9.8 71 714-788 126-207 (262)
253 3fht_A ATP-dependent RNA helic 74.4 5.5 0.00019 44.1 7.9 71 540-623 266-340 (412)
254 1qde_A EIF4A, translation init 74.1 3.7 0.00013 41.3 5.8 70 714-788 82-161 (224)
255 2d7d_A Uvrabc system protein B 73.6 15 0.00051 43.9 11.7 77 540-629 445-525 (661)
256 2i1q_A DNA repair and recombin 73.5 3.6 0.00012 44.4 5.8 23 504-526 98-120 (322)
257 1gku_B Reverse gyrase, TOP-RG; 73.2 6.1 0.00021 50.1 8.6 74 713-788 98-181 (1054)
258 1e9r_A Conjugal transfer prote 73.2 3.1 0.00011 47.0 5.4 44 503-554 52-95 (437)
259 3b85_A Phosphate starvation-in 72.6 3.4 0.00012 41.5 5.0 31 491-521 9-39 (208)
260 3io5_A Recombination and repai 72.3 4.1 0.00014 43.7 5.6 41 506-552 30-70 (333)
261 1wp9_A ATP-dependent RNA helic 72.3 11 0.00039 42.2 10.1 88 696-788 32-131 (494)
262 2oap_1 GSPE-2, type II secreti 72.2 3.2 0.00011 47.9 5.3 37 482-520 239-276 (511)
263 1c4o_A DNA nucleotide excision 72.2 17 0.00057 43.5 11.7 76 540-628 439-518 (664)
264 1p9r_A General secretion pathw 72.1 4.7 0.00016 45.3 6.4 34 495-529 156-191 (418)
265 3jvv_A Twitching mobility prot 72.0 3.1 0.00011 45.6 4.9 18 503-520 122-139 (356)
266 3pey_A ATP-dependent RNA helic 71.8 21 0.00073 38.8 11.9 75 540-627 243-321 (395)
267 2db3_A ATP-dependent RNA helic 69.9 8.7 0.0003 43.2 8.2 69 542-623 302-374 (434)
268 3b9q_A Chloroplast SRP recepto 69.8 11 0.00038 40.2 8.5 19 503-521 99-117 (302)
269 4a2p_A RIG-I, retinoic acid in 69.5 11 0.00036 43.7 9.1 71 714-788 55-136 (556)
270 2yjt_D ATP-dependent RNA helic 72.3 0.97 3.3E-05 43.8 0.0 71 540-623 30-104 (170)
271 2og2_A Putative signal recogni 68.6 12 0.00041 40.9 8.6 18 504-521 157-174 (359)
272 2j0s_A ATP-dependent RNA helic 68.4 8.9 0.0003 42.5 7.8 71 540-623 276-350 (410)
273 1s2m_A Putative ATP-dependent 68.3 8.1 0.00028 42.6 7.4 71 540-623 258-332 (400)
274 3g5j_A Putative ATP/GTP bindin 67.9 5.5 0.00019 36.4 4.9 48 703-750 77-126 (134)
275 1fuu_A Yeast initiation factor 67.6 11 0.00039 41.1 8.4 71 713-788 88-168 (394)
276 3gk5_A Uncharacterized rhodane 67.0 4.4 0.00015 35.8 3.9 46 704-749 45-90 (108)
277 1kgd_A CASK, peripheral plasma 66.9 2.9 0.0001 40.7 3.0 18 503-520 4-21 (180)
278 2xau_A PRE-mRNA-splicing facto 66.8 12 0.0004 45.7 8.8 75 540-623 303-393 (773)
279 1tf7_A KAIC; homohexamer, hexa 66.8 16 0.00056 42.1 9.8 21 503-523 280-300 (525)
280 3u4q_B ATP-dependent helicase/ 66.6 5.6 0.00019 51.1 6.3 48 507-560 4-51 (1166)
281 3p32_A Probable GTPase RV1496/ 66.1 41 0.0014 36.5 12.4 17 506-522 81-97 (355)
282 1q0u_A Bstdead; DEAD protein, 65.8 8.9 0.00031 38.3 6.5 71 714-788 72-156 (219)
283 2gza_A Type IV secretion syste 65.8 3.7 0.00013 45.2 3.8 20 501-520 172-191 (361)
284 3vaa_A Shikimate kinase, SK; s 65.6 3.4 0.00012 40.9 3.2 20 503-522 24-43 (199)
285 1sxj_C Activator 1 40 kDa subu 65.0 22 0.00076 38.2 10.0 22 501-522 41-64 (340)
286 1qhx_A CPT, protein (chloramph 64.9 2.7 9.4E-05 40.5 2.3 18 504-521 3-20 (178)
287 4akg_A Glutathione S-transfera 64.5 9.9 0.00034 52.5 8.2 48 474-522 890-941 (2695)
288 3dkp_A Probable ATP-dependent 64.3 5.1 0.00017 41.0 4.4 71 715-788 99-181 (245)
289 1yks_A Genome polyprotein [con 64.2 6.2 0.00021 44.7 5.4 68 540-622 177-245 (440)
290 3iij_A Coilin-interacting nucl 64.0 2.7 9.3E-05 40.8 2.1 21 502-522 9-29 (180)
291 3hws_A ATP-dependent CLP prote 63.8 11 0.00037 41.3 7.2 19 503-521 50-68 (363)
292 3cmw_A Protein RECA, recombina 63.5 5.8 0.0002 52.2 5.4 93 504-631 1431-1523(1706)
293 1lvg_A Guanylate kinase, GMP k 63.2 4.2 0.00014 40.4 3.3 18 503-520 3-20 (198)
294 2r44_A Uncharacterized protein 63.0 4.5 0.00016 43.6 3.9 24 497-520 39-62 (331)
295 2j41_A Guanylate kinase; GMP, 62.6 3.9 0.00013 40.5 3.0 21 501-521 3-23 (207)
296 3a8t_A Adenylate isopentenyltr 62.5 3.9 0.00013 44.3 3.1 18 505-522 41-58 (339)
297 3trf_A Shikimate kinase, SK; a 62.4 4.2 0.00014 39.5 3.1 19 504-522 5-23 (185)
298 2bjv_A PSP operon transcriptio 62.3 6 0.00021 41.0 4.5 19 502-520 27-45 (265)
299 3eiq_A Eukaryotic initiation f 62.1 18 0.00061 39.8 8.8 73 713-788 107-189 (414)
300 2fsf_A Preprotein translocase 62.0 14 0.00049 44.6 8.1 72 711-788 112-200 (853)
301 3tau_A Guanylate kinase, GMP k 61.8 4.4 0.00015 40.5 3.2 19 503-521 7-25 (208)
302 3lw7_A Adenylate kinase relate 61.5 3.5 0.00012 39.3 2.4 17 506-522 3-19 (179)
303 3dmn_A Putative DNA helicase; 61.5 64 0.0022 30.9 11.5 85 693-792 39-124 (174)
304 4f4c_A Multidrug resistance pr 61.4 7.8 0.00027 50.3 6.2 43 615-657 1233-1275(1321)
305 3fmo_B ATP-dependent RNA helic 61.3 6.9 0.00023 41.7 4.8 67 715-788 163-241 (300)
306 3exa_A TRNA delta(2)-isopenten 61.1 3.8 0.00013 43.8 2.7 17 505-521 4-20 (322)
307 3tr0_A Guanylate kinase, GMP k 61.0 4.3 0.00015 40.1 3.0 18 503-520 6-23 (205)
308 3nbx_X ATPase RAVA; AAA+ ATPas 60.8 4.5 0.00015 46.6 3.4 26 495-520 32-57 (500)
309 1u0j_A DNA replication protein 60.5 14 0.00049 38.4 6.9 43 477-522 74-122 (267)
310 1kht_A Adenylate kinase; phosp 59.9 4.9 0.00017 39.1 3.1 19 503-521 2-20 (192)
311 1ixz_A ATP-dependent metallopr 59.8 3.1 0.00011 43.0 1.7 54 464-520 10-65 (254)
312 3l49_A ABC sugar (ribose) tran 59.8 1.3E+02 0.0044 30.7 14.6 183 541-739 6-215 (291)
313 2qmh_A HPR kinase/phosphorylas 59.5 4.2 0.00014 40.5 2.4 19 503-521 33-51 (205)
314 3ney_A 55 kDa erythrocyte memb 59.2 5 0.00017 39.9 3.0 19 502-520 17-35 (197)
315 2pt7_A CAG-ALFA; ATPase, prote 59.2 4.8 0.00016 43.6 3.1 20 501-520 168-187 (330)
316 1kag_A SKI, shikimate kinase I 59.2 6 0.00021 37.8 3.6 18 504-521 4-21 (173)
317 2ze6_A Isopentenyl transferase 59.0 4.9 0.00017 41.7 3.0 16 507-522 4-19 (253)
318 3tbk_A RIG-I helicase domain; 58.9 14 0.00047 42.7 7.3 71 714-788 52-133 (555)
319 3b6e_A Interferon-induced heli 58.7 11 0.00037 37.3 5.6 55 714-772 82-140 (216)
320 3foz_A TRNA delta(2)-isopenten 58.6 5 0.00017 42.8 3.1 16 506-521 12-27 (316)
321 1ojl_A Transcriptional regulat 58.5 10 0.00035 40.4 5.6 18 503-520 24-41 (304)
322 1w36_B RECB, exodeoxyribonucle 58.5 17 0.00058 46.7 8.5 60 506-565 18-81 (1180)
323 1tf5_A Preprotein translocase 58.4 21 0.00071 43.3 8.6 71 712-788 122-209 (844)
324 1zp6_A Hypothetical protein AT 58.3 3.5 0.00012 40.3 1.7 19 502-520 7-25 (191)
325 2x8a_A Nuclear valosin-contain 58.2 2.1 7.3E-05 45.1 0.1 53 465-520 5-60 (274)
326 2qor_A Guanylate kinase; phosp 58.2 4.8 0.00017 40.0 2.8 21 501-521 9-29 (204)
327 2r8r_A Sensor protein; KDPD, P 58.2 9.5 0.00032 38.7 4.9 24 506-529 8-31 (228)
328 4dzz_A Plasmid partitioning pr 57.8 16 0.00054 35.8 6.6 31 591-627 55-85 (206)
329 1z6g_A Guanylate kinase; struc 57.7 6.4 0.00022 39.7 3.6 19 502-520 21-39 (218)
330 3nwn_A Kinesin-like protein KI 57.3 7 0.00024 42.7 4.0 26 496-521 95-122 (359)
331 2ipc_A Preprotein translocase 57.3 25 0.00084 43.0 8.9 56 711-772 117-176 (997)
332 3nwj_A ATSK2; P loop, shikimat 57.3 7 0.00024 40.4 3.9 22 501-522 45-66 (250)
333 4a2q_A RIG-I, retinoic acid in 57.2 21 0.0007 43.7 8.7 71 714-788 296-377 (797)
334 3a00_A Guanylate kinase, GMP k 56.8 6.6 0.00022 38.3 3.4 16 505-520 2-17 (186)
335 4etp_A Kinesin-like protein KA 56.5 7.9 0.00027 43.1 4.3 25 497-521 132-158 (403)
336 1y63_A LMAJ004144AAA protein; 56.4 6.2 0.00021 38.4 3.2 19 503-521 9-27 (184)
337 3cm0_A Adenylate kinase; ATP-b 56.3 4.6 0.00016 39.2 2.2 20 503-522 3-22 (186)
338 1bg2_A Kinesin; motor protein, 56.0 8.1 0.00028 41.7 4.2 26 496-521 68-95 (325)
339 4f4c_A Multidrug resistance pr 55.6 6.1 0.00021 51.4 3.7 41 615-655 570-610 (1321)
340 3dc4_A Kinesin-like protein NO 55.5 7.5 0.00026 42.3 3.8 26 496-521 85-112 (344)
341 1iy2_A ATP-dependent metallopr 55.4 4 0.00014 42.9 1.6 53 465-520 35-89 (278)
342 2ewv_A Twitching motility prot 55.1 5.3 0.00018 44.1 2.6 19 502-520 134-152 (372)
343 1v8k_A Kinesin-like protein KI 55.1 7.5 0.00026 43.2 3.8 26 496-521 145-172 (410)
344 1u94_A RECA protein, recombina 54.7 11 0.00039 41.1 5.2 38 503-548 62-99 (356)
345 2zr9_A Protein RECA, recombina 54.7 11 0.00037 41.2 5.0 37 504-548 61-97 (349)
346 3k4h_A Putative transcriptiona 54.7 1.4E+02 0.0047 30.5 13.8 27 714-740 191-217 (292)
347 3kb2_A SPBC2 prophage-derived 54.6 6.7 0.00023 37.3 3.0 17 506-522 3-19 (173)
348 3crm_A TRNA delta(2)-isopenten 54.5 6.4 0.00022 42.4 3.1 16 506-521 7-22 (323)
349 4gp7_A Metallophosphoesterase; 54.4 4.9 0.00017 38.8 2.0 20 503-522 8-27 (171)
350 2y65_A Kinesin, kinesin heavy 54.2 8.9 0.0003 42.0 4.2 26 496-521 75-102 (365)
351 2vvg_A Kinesin-2; motor protei 54.1 9 0.00031 41.7 4.2 26 496-521 80-107 (350)
352 1znw_A Guanylate kinase, GMP k 54.0 7.1 0.00024 38.8 3.2 21 500-520 16-36 (207)
353 2h58_A Kinesin-like protein KI 54.0 9.1 0.00031 41.3 4.2 26 496-521 71-98 (330)
354 3l9o_A ATP-dependent RNA helic 53.9 12 0.00041 47.6 5.9 66 712-788 225-296 (1108)
355 2zfi_A Kinesin-like protein KI 53.9 8.2 0.00028 42.4 3.8 26 496-521 80-107 (366)
356 1xjc_A MOBB protein homolog; s 53.8 13 0.00044 35.9 4.8 24 506-530 6-29 (169)
357 1ly1_A Polynucleotide kinase; 53.6 7.1 0.00024 37.4 3.0 16 506-521 4-19 (181)
358 3b6u_A Kinesin-like protein KI 53.5 8.8 0.0003 42.1 4.0 26 496-521 92-119 (372)
359 2ius_A DNA translocase FTSK; n 53.5 13 0.00044 42.7 5.5 28 503-530 166-193 (512)
360 2ykg_A Probable ATP-dependent 53.4 17 0.00057 43.6 7.0 70 715-788 62-142 (696)
361 2jtq_A Phage shock protein E; 53.3 19 0.00064 29.8 5.3 36 713-749 40-76 (85)
362 4a14_A Kinesin, kinesin-like p 53.2 9.4 0.00032 41.5 4.2 26 496-521 74-101 (344)
363 1t5c_A CENP-E protein, centrom 53.2 9 0.00031 41.7 4.0 26 496-521 68-95 (349)
364 4eun_A Thermoresistant glucoki 53.2 7.5 0.00026 38.4 3.2 19 503-521 28-46 (200)
365 1goj_A Kinesin, kinesin heavy 53.1 9 0.00031 41.8 4.0 25 497-521 72-98 (355)
366 1tue_A Replication protein E1; 53.1 14 0.00048 36.9 5.0 49 477-528 29-81 (212)
367 3s99_A Basic membrane lipoprot 52.9 2.5E+02 0.0084 30.3 17.1 82 541-625 27-118 (356)
368 2nr8_A Kinesin-like protein KI 52.7 9.2 0.00032 41.8 4.0 26 496-521 94-121 (358)
369 2c9o_A RUVB-like 1; hexameric 52.6 11 0.00037 42.8 4.8 19 504-522 63-81 (456)
370 1knq_A Gluconate kinase; ALFA/ 52.6 6.6 0.00023 37.7 2.6 18 504-521 8-25 (175)
371 1nkt_A Preprotein translocase 52.5 26 0.00091 42.6 8.2 71 712-788 150-237 (922)
372 3ice_A Transcription terminati 52.5 65 0.0022 35.5 10.6 32 491-522 158-192 (422)
373 3lre_A Kinesin-like protein KI 52.4 9.4 0.00032 41.7 4.0 25 497-521 97-123 (355)
374 3gbj_A KIF13B protein; kinesin 52.3 9.4 0.00032 41.7 4.0 26 496-521 83-110 (354)
375 2wbe_C Bipolar kinesin KRP-130 52.2 8.1 0.00028 42.5 3.5 26 496-521 91-118 (373)
376 3d3q_A TRNA delta(2)-isopenten 52.1 7.4 0.00025 42.2 3.1 16 506-521 9-24 (340)
377 3u06_A Protein claret segregat 51.9 9.1 0.00031 42.7 3.9 26 496-521 129-156 (412)
378 1x88_A Kinesin-like protein KI 51.7 8.7 0.0003 42.0 3.6 26 496-521 79-106 (359)
379 3t0q_A AGR253WP; kinesin, alph 51.6 7.6 0.00026 42.3 3.1 26 496-521 76-103 (349)
380 2wv9_A Flavivirin protease NS2 51.3 13 0.00045 44.4 5.4 68 540-622 410-478 (673)
381 1ex7_A Guanylate kinase; subst 51.2 7.2 0.00025 38.3 2.6 16 505-520 2-17 (186)
382 1tev_A UMP-CMP kinase; ploop, 51.1 7 0.00024 38.0 2.6 19 504-522 3-21 (196)
383 1gmx_A GLPE protein; transfera 51.1 10 0.00034 33.3 3.3 44 707-750 51-95 (108)
384 2iut_A DNA translocase FTSK; n 51.0 15 0.0005 42.7 5.5 27 504-530 214-240 (574)
385 1f9v_A Kinesin-like protein KA 50.8 7.7 0.00026 42.2 3.0 25 497-521 76-102 (347)
386 3o8b_A HCV NS3 protease/helica 50.7 14 0.00047 43.9 5.3 67 539-622 395-461 (666)
387 3l6u_A ABC-type sugar transpor 50.6 2.2E+02 0.0074 29.0 16.2 35 703-739 185-219 (293)
388 2heh_A KIF2C protein; kinesin, 50.6 9.8 0.00034 42.0 3.8 27 496-522 125-153 (387)
389 3cob_A Kinesin heavy chain-lik 50.3 8.6 0.00029 42.2 3.3 25 497-521 71-97 (369)
390 2owm_A Nckin3-434, related to 50.2 9.9 0.00034 42.8 3.9 26 496-521 127-154 (443)
391 2c95_A Adenylate kinase 1; tra 50.2 8.7 0.0003 37.5 3.1 20 503-522 8-27 (196)
392 2r2a_A Uncharacterized protein 50.0 9.7 0.00033 37.8 3.4 21 506-526 7-27 (199)
393 1s96_A Guanylate kinase, GMP k 49.9 9.1 0.00031 38.7 3.2 20 501-520 13-32 (219)
394 2v6i_A RNA helicase; membrane, 49.9 20 0.0007 40.2 6.5 54 540-598 171-225 (431)
395 2bdt_A BH3686; alpha-beta prot 49.8 8.9 0.0003 37.3 3.1 16 506-521 4-19 (189)
396 3t61_A Gluconokinase; PSI-biol 49.7 8.9 0.0003 37.8 3.1 18 505-522 19-36 (202)
397 3tqc_A Pantothenate kinase; bi 49.6 25 0.00085 37.7 6.8 15 507-521 95-109 (321)
398 3bfn_A Kinesin-like protein KI 49.3 9 0.00031 42.3 3.3 25 497-521 90-116 (388)
399 1zuh_A Shikimate kinase; alpha 49.2 9 0.00031 36.4 2.9 18 505-522 8-25 (168)
400 3sr0_A Adenylate kinase; phosp 49.1 11 0.00037 37.7 3.6 18 506-523 2-19 (206)
401 3cwq_A Para family chromosome 48.9 1.1E+02 0.0036 30.2 11.1 18 508-525 5-22 (209)
402 4a74_A DNA repair and recombin 48.8 14 0.00046 37.0 4.4 19 503-521 24-42 (231)
403 3rc3_A ATP-dependent RNA helic 48.8 29 0.001 41.4 7.9 74 542-629 322-401 (677)
404 1ak2_A Adenylate kinase isoenz 48.8 8.9 0.0003 38.9 3.0 20 503-522 15-34 (233)
405 3flh_A Uncharacterized protein 48.8 6.9 0.00024 35.4 1.9 46 704-749 61-108 (124)
406 1f2t_A RAD50 ABC-ATPase; DNA d 48.7 11 0.00038 35.3 3.4 15 506-520 25-39 (149)
407 2v54_A DTMP kinase, thymidylat 48.6 7.6 0.00026 38.2 2.4 19 503-521 3-21 (204)
408 3uie_A Adenylyl-sulfate kinase 48.5 8.5 0.00029 38.0 2.7 19 503-521 24-42 (200)
409 2fz4_A DNA repair protein RAD2 48.2 34 0.0012 34.7 7.3 63 695-772 116-179 (237)
410 3egc_A Putative ribose operon 48.2 2.2E+02 0.0076 28.9 14.2 37 702-740 175-211 (291)
411 3foj_A Uncharacterized protein 47.9 8.2 0.00028 33.3 2.2 37 713-749 55-91 (100)
412 4gl2_A Interferon-induced heli 47.7 9.4 0.00032 45.9 3.4 74 540-622 400-487 (699)
413 2rhm_A Putative kinase; P-loop 47.6 9.5 0.00033 37.0 2.9 18 504-521 5-22 (193)
414 2z0m_A 337AA long hypothetical 47.5 56 0.0019 34.4 9.4 70 714-788 56-135 (337)
415 3umf_A Adenylate kinase; rossm 47.4 10 0.00034 38.3 3.0 20 504-523 29-48 (217)
416 3eph_A TRNA isopentenyltransfe 47.2 10 0.00036 42.0 3.3 16 507-522 5-20 (409)
417 2va8_A SSO2462, SKI2-type heli 47.2 33 0.0011 41.2 8.2 76 540-624 252-363 (715)
418 2plr_A DTMP kinase, probable t 47.2 8.4 0.00029 38.1 2.5 19 503-521 3-21 (213)
419 3kta_A Chromosome segregation 47.1 10 0.00035 36.5 3.0 15 506-520 28-42 (182)
420 3ksm_A ABC-type sugar transpor 47.1 2.3E+02 0.008 28.3 15.3 35 703-739 177-211 (276)
421 1ye8_A Protein THEP1, hypothet 47.0 11 0.00036 36.8 3.0 15 506-520 2-16 (178)
422 1m7g_A Adenylylsulfate kinase; 46.7 11 0.00037 37.6 3.2 29 492-521 14-42 (211)
423 3hix_A ALR3790 protein; rhodan 46.7 19 0.00065 31.4 4.5 37 713-749 51-88 (106)
424 1via_A Shikimate kinase; struc 46.6 12 0.0004 35.9 3.3 17 506-522 6-22 (175)
425 4fcw_A Chaperone protein CLPB; 46.6 11 0.00039 39.8 3.6 17 505-521 48-64 (311)
426 2bwj_A Adenylate kinase 5; pho 46.5 10 0.00035 37.0 3.0 19 503-521 11-29 (199)
427 2oca_A DAR protein, ATP-depend 46.4 56 0.0019 37.2 9.7 76 540-627 347-426 (510)
428 1nks_A Adenylate kinase; therm 46.2 10 0.00035 36.7 2.9 16 506-521 3-18 (194)
429 1c9k_A COBU, adenosylcobinamid 46.1 13 0.00043 36.3 3.4 44 507-562 2-45 (180)
430 3fb4_A Adenylate kinase; psych 46.0 11 0.00037 37.6 3.1 17 506-522 2-18 (216)
431 3iwh_A Rhodanese-like domain p 45.9 7.7 0.00026 34.0 1.7 38 712-749 54-91 (103)
432 3lnc_A Guanylate kinase, GMP k 45.8 8.1 0.00028 39.2 2.1 18 503-520 26-43 (231)
433 2whx_A Serine protease/ntpase/ 45.4 30 0.001 40.8 7.3 54 540-598 355-409 (618)
434 2rep_A Kinesin-like protein KI 45.3 11 0.00039 41.3 3.3 25 497-521 107-133 (376)
435 1aky_A Adenylate kinase; ATP:A 45.3 11 0.00039 37.7 3.1 19 504-522 4-22 (220)
436 2i3b_A HCR-ntpase, human cance 45.2 13 0.00045 36.5 3.5 41 615-658 103-145 (189)
437 1qf9_A UMP/CMP kinase, protein 45.2 11 0.00037 36.5 2.9 17 506-522 8-24 (194)
438 1zak_A Adenylate kinase; ATP:A 45.2 12 0.00042 37.4 3.4 19 504-522 5-23 (222)
439 1in4_A RUVB, holliday junction 45.0 12 0.0004 40.5 3.3 16 505-520 52-67 (334)
440 2jlq_A Serine protease subunit 45.0 19 0.00066 40.6 5.3 68 540-622 188-256 (451)
441 2iyv_A Shikimate kinase, SK; t 44.9 14 0.00046 35.7 3.5 18 505-522 3-20 (184)
442 3dl0_A Adenylate kinase; phosp 44.8 12 0.0004 37.4 3.1 17 506-522 2-18 (216)
443 1cke_A CK, MSSA, protein (cyti 44.8 11 0.00039 37.7 3.0 18 505-522 6-23 (227)
444 1wv9_A Rhodanese homolog TT165 44.6 12 0.00041 31.8 2.7 35 715-749 54-88 (94)
445 1zd8_A GTP:AMP phosphotransfer 44.6 11 0.00038 38.0 2.9 18 504-521 7-24 (227)
446 2jaq_A Deoxyguanosine kinase; 44.5 12 0.0004 36.7 3.1 15 507-521 3-17 (205)
447 2zj8_A DNA helicase, putative 44.4 39 0.0013 40.6 8.2 74 540-622 237-343 (720)
448 1ry6_A Internal kinesin; kines 44.4 13 0.00046 40.5 3.6 19 503-521 82-102 (360)
449 3eme_A Rhodanese-like domain p 44.4 8.4 0.00029 33.5 1.7 37 713-749 55-91 (103)
450 1gvn_B Zeta; postsegregational 44.3 11 0.00038 39.8 2.9 17 505-521 34-50 (287)
451 2r62_A Cell division protease 44.1 6.8 0.00023 40.7 1.2 18 504-521 44-61 (268)
452 2yvu_A Probable adenylyl-sulfa 44.1 11 0.00037 36.6 2.7 19 504-522 13-31 (186)
453 1e6c_A Shikimate kinase; phosp 44.1 12 0.00043 35.5 3.1 18 505-522 3-20 (173)
454 3c8u_A Fructokinase; YP_612366 43.9 10 0.00036 37.6 2.5 17 504-520 22-38 (208)
455 2fwr_A DNA repair protein RAD2 43.9 30 0.001 39.0 6.8 78 696-788 117-198 (472)
456 1z5z_A Helicase of the SNF2/RA 43.7 81 0.0028 32.6 9.6 92 512-623 92-189 (271)
457 3zyw_A Glutaredoxin-3; metal b 43.6 67 0.0023 28.2 7.6 54 705-758 6-65 (111)
458 3fkq_A NTRC-like two-domain pr 43.6 32 0.0011 37.6 6.7 16 511-526 151-166 (373)
459 4a2w_A RIG-I, retinoic acid in 43.5 32 0.0011 42.8 7.4 71 714-788 296-377 (936)
460 1g8p_A Magnesium-chelatase 38 43.1 15 0.0005 39.6 3.8 18 503-520 44-61 (350)
461 2pez_A Bifunctional 3'-phospho 43.1 12 0.0004 36.1 2.7 19 503-521 4-22 (179)
462 2cdn_A Adenylate kinase; phosp 43.1 13 0.00044 36.6 3.0 18 505-522 21-38 (201)
463 2yqr_A KIAA0907 protein; struc 43.0 18 0.00062 32.6 3.7 29 930-958 73-101 (119)
464 3ipz_A Monothiol glutaredoxin- 42.9 77 0.0026 27.6 7.9 54 705-758 8-67 (109)
465 3fmp_B ATP-dependent RNA helic 42.6 5.2 0.00018 45.7 0.0 70 540-622 333-406 (479)
466 3pxg_A Negative regulator of g 42.5 29 0.00098 39.4 6.2 20 503-522 200-219 (468)
467 1jjv_A Dephospho-COA kinase; P 42.4 13 0.00046 36.6 3.1 15 507-521 5-19 (206)
468 1ukz_A Uridylate kinase; trans 42.4 13 0.00046 36.4 3.1 16 506-521 17-32 (203)
469 3asz_A Uridine kinase; cytidin 41.8 13 0.00045 36.8 2.9 17 504-520 6-22 (211)
470 2f1r_A Molybdopterin-guanine d 41.8 8.8 0.0003 37.1 1.5 16 506-521 4-19 (171)
471 2pt5_A Shikimate kinase, SK; a 41.5 14 0.0005 34.8 3.1 17 506-522 2-18 (168)
472 2vli_A Antibiotic resistance p 41.5 11 0.00039 36.1 2.3 19 504-522 5-23 (183)
473 2qt1_A Nicotinamide riboside k 41.4 13 0.00046 36.7 2.9 19 503-521 20-38 (207)
474 3qf7_A RAD50; ABC-ATPase, ATPa 41.4 14 0.00047 40.6 3.2 16 506-521 25-40 (365)
475 2p6r_A Afuhel308 helicase; pro 41.4 32 0.0011 41.2 6.8 84 698-788 51-144 (702)
476 3mwy_W Chromo domain-containin 41.3 1.2E+02 0.0041 36.8 12.0 93 514-626 554-652 (800)
477 1q57_A DNA primase/helicase; d 41.3 14 0.00048 42.5 3.4 39 503-548 241-279 (503)
478 2bbw_A Adenylate kinase 4, AK4 41.2 14 0.00047 37.8 3.0 18 504-521 27-44 (246)
479 2if2_A Dephospho-COA kinase; a 41.0 14 0.00047 36.4 2.9 16 506-521 3-18 (204)
480 3tif_A Uncharacterized ABC tra 40.9 12 0.00041 38.2 2.5 18 503-520 30-47 (235)
481 2pbr_A DTMP kinase, thymidylat 40.7 15 0.00051 35.6 3.1 15 507-521 3-17 (195)
482 1e4v_A Adenylate kinase; trans 40.5 14 0.00048 36.8 2.9 17 506-522 2-18 (214)
483 1nij_A Hypothetical protein YJ 40.5 22 0.00076 38.0 4.7 14 507-520 7-20 (318)
484 1np6_A Molybdopterin-guanine d 40.3 28 0.00094 33.6 4.9 23 506-529 8-30 (174)
485 2v9p_A Replication protein E1; 40.3 12 0.00042 39.9 2.5 18 503-520 125-142 (305)
486 2wwf_A Thymidilate kinase, put 40.3 15 0.0005 36.3 3.0 20 503-522 9-28 (212)
487 3h1t_A Type I site-specific re 39.9 51 0.0017 38.5 8.1 79 540-627 439-527 (590)
488 3qks_A DNA double-strand break 39.8 18 0.0006 35.9 3.4 15 506-520 25-39 (203)
489 2z0h_A DTMP kinase, thymidylat 39.5 16 0.00054 35.5 3.1 16 507-522 3-18 (197)
490 3be4_A Adenylate kinase; malar 39.4 15 0.00052 36.7 2.9 18 505-522 6-23 (217)
491 1nn5_A Similar to deoxythymidy 39.3 15 0.00051 36.4 2.8 20 503-522 8-27 (215)
492 2yan_A Glutaredoxin-3; oxidore 39.2 79 0.0027 27.1 7.3 53 708-760 10-68 (105)
493 2xb4_A Adenylate kinase; ATP-b 39.2 16 0.00054 36.8 3.1 16 507-522 3-18 (223)
494 3a4m_A L-seryl-tRNA(SEC) kinas 38.9 16 0.00054 37.8 3.0 18 505-522 5-22 (260)
495 3hjh_A Transcription-repair-co 38.7 1.7E+02 0.0059 33.1 11.9 112 689-802 16-145 (483)
496 2l82_A Designed protein OR32; 38.7 82 0.0028 27.1 6.8 52 717-768 5-56 (162)
497 1uf9_A TT1252 protein; P-loop, 38.7 16 0.00054 35.8 2.9 16 506-521 10-25 (203)
498 1k1g_A SF1-BO isoform; splicin 38.4 21 0.00072 32.8 3.4 27 930-956 73-99 (131)
499 1sgw_A Putative ABC transporte 38.0 16 0.00055 36.7 2.8 19 503-521 34-52 (214)
500 3vkg_A Dynein heavy chain, cyt 37.9 40 0.0014 47.3 7.3 79 474-557 873-954 (3245)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-63 Score=579.88 Aligned_cols=389 Identities=39% Similarity=0.659 Sum_probs=360.7
Q ss_pred cCceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcC
Q 002040 453 LELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQ 532 (976)
Q Consensus 453 ~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~ 532 (976)
..+.+.|.++|.|+.+|.+++|++.+++.|..+||..|+|+|.++||.+++|+|+|++|+||||||++|++|++.++...
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcc
Q 002040 533 PPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKI 612 (976)
Q Consensus 533 ~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~ 612 (976)
+......++++|||+||++||.|++..+.+++...++.+.+++||.....+...+..+++|+|+||++|.+++....
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~--- 198 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--- 198 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS---
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC---
Confidence 54334457899999999999999999999999888999999999999998888888899999999999999987542
Q ss_pred cccCCceEEEecCcccccccCCchHHHHHHHhc--CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceE
Q 002040 613 TNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ 690 (976)
Q Consensus 613 ~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~--~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q 690 (976)
..+.++.+|||||||+|++++|...+..++..+ ++.+|+|+||||+|..+..++..++.+++.+.++........+.+
T Consensus 199 ~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 199 ITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp CCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEE
T ss_pred cccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccce
Confidence 568899999999999999999999999999875 678999999999999999999999999999988877777778899
Q ss_pred EEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEe
Q 002040 691 LVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA 770 (976)
Q Consensus 691 ~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa 770 (976)
.+.......+...|+.+|... ..++||||+++..|+.++..|...|+.+..+||++++.+|..+++.|++|.++||||
T Consensus 279 ~~~~~~~~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVNKYAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECCGGGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeCcHHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 988888889999999988775 345999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecC-CCcCchHHHHHHHhhccCCCChHHHH
Q 002040 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPDDLKA 846 (976)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~vp~~l~~ 846 (976)
|+++++|||||++++||+||+|+++..|+||+||+||.|+.|.|++|+++ .+...+..|++.|..+.+.+|++|..
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999999999999995 57788999999999999999998754
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-57 Score=526.84 Aligned_cols=392 Identities=42% Similarity=0.694 Sum_probs=353.5
Q ss_pred ceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCC
Q 002040 455 LKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPP 534 (976)
Q Consensus 455 i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~ 534 (976)
+.+.|..+|.|+.+|.+++|++.+.+.|..+||..|+|+|.++|+.++.++++|+++|||||||++|++|++..+.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999988865321
Q ss_pred C-------------CCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH
Q 002040 535 V-------------AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM 601 (976)
Q Consensus 535 ~-------------~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L 601 (976)
. ....++++|||+||++||.|++..+..++...++.+..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 112357899999999999999999999998889999999999999988888888999999999999
Q ss_pred HHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHh--cCC--CCcEEEEeccCcHHHHHHHHHHcCCCeEEE
Q 002040 602 IDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN--IRP--DRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (976)
Q Consensus 602 ~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~--~~~--~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~ 677 (976)
..++.... ..+..+++|||||||++++++|...+..++.. +++ ..|+|+||||+++.+..++..++..+..+.
T Consensus 163 ~~~l~~~~---~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 239 (417)
T 2i4i_A 163 VDMMERGK---IGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLA 239 (417)
T ss_dssp HHHHHTTS---BCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHcCC---cChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEE
Confidence 99887642 46788999999999999999999999999874 332 679999999999999999999999998888
Q ss_pred eCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHH
Q 002040 678 VGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTI 757 (976)
Q Consensus 678 ~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~ 757 (976)
+.........+.+.+.......+...+..++......+++||||+++..++.++..|...++.+..+||++++.+|..++
T Consensus 240 ~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (417)
T 2i4i_A 240 VGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEAL 319 (417)
T ss_dssp EC----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred eCCCCCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHH
Confidence 87766677788888888888889999999888766678999999999999999999999999999999999999999999
Q ss_pred HHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhcc
Q 002040 758 SDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (976)
Q Consensus 758 ~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (976)
+.|++|.++|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|++.+....
T Consensus 320 ~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 320 HQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp HHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred HHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHH
Q 002040 838 QVVPDDLKALAD 849 (976)
Q Consensus 838 ~~vp~~l~~l~~ 849 (976)
+.+|.+|..++.
T Consensus 400 ~~~~~~l~~~~~ 411 (417)
T 2i4i_A 400 QEVPSWLENMAY 411 (417)
T ss_dssp CCCCHHHHHHHT
T ss_pred CcCCHHHHHHHH
Confidence 999998877653
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.6e-54 Score=499.67 Aligned_cols=373 Identities=33% Similarity=0.565 Sum_probs=336.3
Q ss_pred CCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCC
Q 002040 461 DVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDG 540 (976)
Q Consensus 461 ~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~ 540 (976)
..+.+..+|.+++|++.++..|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 345667889999999999999999999999999999999999999999999999999999999999876432 246
Q ss_pred CeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 541 PVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 541 ~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
+++|||+||++|+.||+..+..++...++.+..++||.....+...+..+++|+|+||++|.+++.... ..+..+++
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~---~~~~~~~~ 182 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRS---LRTRAIKM 182 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCC---ccHhheeE
Confidence 789999999999999999999999889999999999999998888888889999999999999887642 45778999
Q ss_pred EEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcc-h
Q 002040 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-D 699 (976)
Q Consensus 621 vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~-~ 699 (976)
|||||||++++++|...+..++..+++..|+|+||||+++.+..+...++.+|..+.+.........+.+.+...... .
T Consensus 183 vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (410)
T 2j0s_A 183 LVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEW 262 (410)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTH
T ss_pred EEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHh
Confidence 999999999999999999999999999999999999999998888888999998887776666667777777655544 4
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCC
Q 002040 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (976)
Q Consensus 700 k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlD 779 (976)
++..+..++... ..+++||||+++..++.++..|...++.+..+||++++.+|..+++.|++|.++|||||+++++|||
T Consensus 263 k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 341 (410)
T 2j0s_A 263 KFDTLCDLYDTL-TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLD 341 (410)
T ss_dssp HHHHHHHHHHHH-TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCC
T ss_pred HHHHHHHHHHhc-CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCC
Confidence 777777777654 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCCh
Q 002040 780 VKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPD 842 (976)
Q Consensus 780 i~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~ 842 (976)
+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+......+|.
T Consensus 342 i~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 342 VPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp CTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred cccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999988888888888766555553
No 4
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-53 Score=492.79 Aligned_cols=379 Identities=31% Similarity=0.544 Sum_probs=324.1
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 002040 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (976)
Q Consensus 460 ~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~ 539 (976)
...+..+.+|..+++++.+.+.|..+||..|+|+|.++|+.++.|+++|++++||||||++|++|++..+... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3445677899999999999999999999999999999999999999999999999999999999999887542 24
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHh-cCCeEEEeCchhHHHHHHhcCCcccccCCc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~ 618 (976)
++++|||+||++|+.|++..+..++...++.+..++||.........+. .+++|+||||++|.+++.... ..+..+
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~---~~~~~~ 184 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRY---LSPKYI 184 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTS---SCSTTC
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cccccC
Confidence 6789999999999999999999999999999999999999888877776 578999999999999987643 456789
Q ss_pred eEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcc
Q 002040 619 TYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES 698 (976)
Q Consensus 619 ~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~ 698 (976)
++|||||||++.+++|...+..++..+++..|+|+||||++..+..+...++.++..+.+.........+.+.+......
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVERE 264 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSS
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChH
Confidence 99999999999999999999999999999999999999999999999999999998888777666666777766655544
Q ss_pred -hHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccccc
Q 002040 699 -DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (976)
Q Consensus 699 -~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~G 777 (976)
.+...+..++... ..+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|
T Consensus 265 ~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G 343 (414)
T 3eiq_A 265 EWKLDTLCDLYETL-TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARG 343 (414)
T ss_dssp TTHHHHHHHHHHSS-CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--
T ss_pred HhHHHHHHHHHHhC-CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccC
Confidence 4777777776654 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHH
Q 002040 778 LDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKAL 847 (976)
Q Consensus 778 lDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l 847 (976)
||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|...+......+|..+.++
T Consensus 344 idip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 344 IDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred CCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 9999999999999999999999999999999999999999999999999999999888888888766544
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.5e-52 Score=483.08 Aligned_cols=371 Identities=33% Similarity=0.554 Sum_probs=330.8
Q ss_pred CCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCe
Q 002040 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~ 542 (976)
+.+..+|.+++|++.+.+.|..+||..|+|+|.++++.++.++++|+++|||+|||++|++|++.++... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3456789999999999999999999999999999999999999999999999999999999999887542 24678
Q ss_pred EEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEE
Q 002040 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (976)
Q Consensus 543 vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vV 622 (976)
+||++||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+||||++|..++.... ..+.++++||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~---~~~~~~~~vI 168 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKV---ADLSDCSLFI 168 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCC---cccccCCEEE
Confidence 9999999999999999999999888999999999998888777777789999999999998886543 4578899999
Q ss_pred ecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHH
Q 002040 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFL 702 (976)
Q Consensus 623 lDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~ 702 (976)
|||||++++.+|...+..++..+++..|+|+||||++..+..+...++..+..+.+... .....+.+.+.......+..
T Consensus 169 iDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~ 247 (400)
T 1s2m_A 169 MDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLH 247 (400)
T ss_dssp EESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHH
T ss_pred EeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHH
Confidence 99999999888888899999999889999999999999999999999998877655432 34456777777777778888
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~ 782 (976)
.+..++... ..+++||||++...++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 248 ~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 248 CLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 777777653 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChH
Q 002040 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (976)
Q Consensus 783 v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (976)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....+.+|..
T Consensus 327 ~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 387 (400)
T 1s2m_A 327 VNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPAT 387 (400)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSS
T ss_pred CCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCccccccc
Confidence 9999999999999999999999999999999999999999888889988887776666653
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.4e-51 Score=471.41 Aligned_cols=367 Identities=30% Similarity=0.549 Sum_probs=322.4
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
.+|.+++|++.+.+.|..+||..|+|+|.++|+.++.++++|+++|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999887542 246789999
Q ss_pred ccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
|||++|+.||+..+..++..+ ++.+..++||.........+..+ ++|+|+||++|..++.... ..+..+++||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~---~~~~~~~~vViD 159 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKHFILD 159 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCSEEEEC
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCC---ccccccCEEEEe
Confidence 999999999999999998776 78999999999887776666554 7999999999998886542 457889999999
Q ss_pred Cccccccc-CCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcc-cccCCceEEEEecCcchHHH
Q 002040 625 EADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS-VVNKDITQLVEVRPESDRFL 702 (976)
Q Consensus 625 Eah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~-~~~~~i~q~~~~~~~~~k~~ 702 (976)
|||++.++ +|...+..++..+++..|+|+||||+++.+..++..++..|..+.+.... .....+.+.+.......+..
T Consensus 160 EaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (391)
T 1xti_A 160 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNR 239 (391)
T ss_dssp SHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHH
T ss_pred CHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHH
Confidence 99998874 77888888998888899999999999999999999999999877765433 33456677777777788888
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCC
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~ 782 (976)
.+..++... ..+++||||+++..+..++..|...|+.+..+||++++.+|..+++.|++|..+|||||+++++|||+|+
T Consensus 240 ~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~ 318 (391)
T 1xti_A 240 KLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 318 (391)
T ss_dssp HHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTT
T ss_pred HHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCccc
Confidence 888888764 5689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CcCchHHHHHHHhhccCCCCh
Q 002040 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPD 842 (976)
Q Consensus 783 v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~i~~~l~~~~~~vp~ 842 (976)
+++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..++..+.+.+......+|.
T Consensus 319 ~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (391)
T 1xti_A 319 VNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPD 379 (391)
T ss_dssp EEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCS
T ss_pred CCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCc
Confidence 999999999999999999999999999999999999876 445566677666665555554
No 7
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2e-50 Score=459.12 Aligned_cols=357 Identities=34% Similarity=0.588 Sum_probs=320.8
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC-CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG-RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g-~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
..+|.+++|++.+...|..+||..|+|+|.++|+.++.+ +++|+++|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 457999999999999999999999999999999999988 6999999999999999999999876532 467899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
|++||++|+.||++.+..++...++.+..++||.....+...+. +++|+|+||+.|...+.... ..+..+++||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~---~~~~~~~~iIiD 154 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGT---LNLKNVKYFILD 154 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTC---SCTTSCCEEEEE
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCC---cccccCCEEEEe
Confidence 99999999999999999998888899999999998887766665 68999999999998886542 457889999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHH
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRL 704 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l 704 (976)
|||.+.+++|...+..++..+++..++|+||||+++.+..+...++.++..+.... ...+.+.+.......++..+
T Consensus 155 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l 230 (367)
T 1hv8_A 155 EADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEAL 230 (367)
T ss_dssp THHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHH
T ss_pred CchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHH
Confidence 99999999999999999999999999999999999999888888888876654432 23566777777788888888
Q ss_pred HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCc
Q 002040 705 LELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELE 784 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~ 784 (976)
..++.. ..+++||||+++..+..++..|...++.+..+||+++..+|..+++.|++|..+|||||+++++|||+|+++
T Consensus 231 ~~~l~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 231 CRLLKN--KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHHHCS--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHHHhc--CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 888763 467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccC
Q 002040 785 LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQ 838 (976)
Q Consensus 785 ~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~ 838 (976)
+||+|++|+++..|+||+||+||.|++|.|++|+++.+...+..|.+.+.....
T Consensus 309 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~ 362 (367)
T 1hv8_A 309 CVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIK 362 (367)
T ss_dssp EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCC
T ss_pred EEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999998888888887765533
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8.4e-51 Score=470.11 Aligned_cols=369 Identities=28% Similarity=0.468 Sum_probs=318.0
Q ss_pred CCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 002040 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (976)
Q Consensus 462 ~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~ 539 (976)
.+.++.+|.++++++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||+|||++|++|++..+... ..
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~ 94 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 94 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SC
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----CC
Confidence 3466889999999999999999999999999999999999987 9999999999999999999999887643 34
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~ 618 (976)
++++|||+||++||.|++..+..+...+ ++.+.+.+++...... ...+++|+|+||++|..++... ....+.++
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~ 169 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKI 169 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CSSCGGGC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhc--CCcChhhC
Confidence 6789999999999999999999988764 6777777877654322 1345799999999999888543 23467889
Q ss_pred eEEEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc
Q 002040 619 TYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE 697 (976)
Q Consensus 619 ~~vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~ 697 (976)
++|||||||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.++..+.+.........+.+.+.....
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS 249 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCC
Confidence 9999999999887 678888999999999999999999999999999999999999988877766666777777665554
Q ss_pred -chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccc
Q 002040 698 -SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAAR 776 (976)
Q Consensus 698 -~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~ 776 (976)
..++..+..++.. ...+++||||+++..+..++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++
T Consensus 250 ~~~~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~ 328 (412)
T 3fht_A 250 RDEKFQALCNLYGA-ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCAR 328 (412)
T ss_dssp HHHHHHHHHHHHHH-HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTS
T ss_pred hHHHHHHHHHHHhh-cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCcccc
Confidence 4566666666654 35679999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCC------CHHHHHHHhcccCCCCCccEEEEEecCCC-cCchHHHHHHHhhccCCCC
Q 002040 777 GLDVKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVVP 841 (976)
Q Consensus 777 GlDi~~v~~VI~~d~p~------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~vp 841 (976)
|||+|++++||+|++|+ +...|+||+||+||.|+.|.|++|+++.+ ..++..|.+.+......++
T Consensus 329 Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 400 (412)
T 3fht_A 329 GIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 400 (412)
T ss_dssp SCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC-
T ss_pred CCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCC
Confidence 99999999999999995 66899999999999999999999998754 6667777777765544444
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.1e-50 Score=465.96 Aligned_cols=358 Identities=31% Similarity=0.547 Sum_probs=310.4
Q ss_pred CcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 002040 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~ 541 (976)
+...+|.+++|++.+++.|..+||..|+|+|.++|+.++.+ +++|+++|||+|||++|++|++.++... ..++
T Consensus 2 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 76 (395)
T 3pey_A 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASP 76 (395)
T ss_dssp --CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSC
T ss_pred ccccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCc
Confidence 34678999999999999999999999999999999999998 8999999999999999999999887542 3467
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEE
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~v 621 (976)
++|||+||++|+.|++..+..++...++.+..++++..... ...+++|+|+||+.|..++... ...+.++++|
T Consensus 77 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iiv~T~~~l~~~~~~~---~~~~~~~~~i 149 (395)
T 3pey_A 77 QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN----KQINAQVIVGTPGTVLDLMRRK---LMQLQKIKIF 149 (395)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT----SCBCCSEEEECHHHHHHHHHTT---CBCCTTCCEE
T ss_pred cEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh----ccCCCCEEEEcHHHHHHHHHcC---CcccccCCEE
Confidence 89999999999999999999999888888888888764322 1236899999999999888653 2467889999
Q ss_pred EecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc-ch
Q 002040 622 VMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-SD 699 (976)
Q Consensus 622 VlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~-~~ 699 (976)
||||||++.+ ++|...+..++..+++..|+|+||||+++.+..++..++..+..+.+.........+.+.+..... ..
T Consensus 150 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (395)
T 3pey_A 150 VLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEAD 229 (395)
T ss_dssp EEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHH
T ss_pred EEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHH
Confidence 9999999887 678888999999999999999999999999999999999999888777666666677776665544 44
Q ss_pred HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCC
Q 002040 700 RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLD 779 (976)
Q Consensus 700 k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlD 779 (976)
+...+..++.. ...+++||||+++..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||
T Consensus 230 ~~~~l~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 308 (395)
T 3pey_A 230 KFDVLTELYGL-MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGID 308 (395)
T ss_dssp HHHHHHHHHTT-TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCC
T ss_pred HHHHHHHHHHh-ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCC
Confidence 55555555543 45689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeCCCC------CHHHHHHHhcccCCCCCccEEEEEecCCC-cCchHHHHHHHh
Q 002040 780 VKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALE 834 (976)
Q Consensus 780 i~~v~~VI~~d~p~------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~ 834 (976)
+|++++||+|++|+ ++..|+||+||+||.|+.|.|++|++..+ ...+..+.+.+.
T Consensus 309 ip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 309 IPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred cccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999 99999999999999999999999998654 344445555444
No 10
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.9e-52 Score=480.85 Aligned_cols=374 Identities=30% Similarity=0.521 Sum_probs=189.6
Q ss_pred CCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 002040 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (976)
Q Consensus 462 ~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~ 541 (976)
...++.+|.+++|++.+...|..+||..|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 45677889999999999999999999999999999999999999999999999999999999999887542 3467
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEE
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~v 621 (976)
++||+|||++|+.|++..+..++...++.+..++|+.........+. +++|+|+||+.|...+.... ..+..+++|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~---~~~~~~~~v 166 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRR---FRTDKIKMF 166 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTS---SCCTTCCEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCC---cchhhCcEE
Confidence 89999999999999999999999888999999999998877665555 58999999999998886532 456789999
Q ss_pred EecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcc-hH
Q 002040 622 VMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPES-DR 700 (976)
Q Consensus 622 VlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~-~k 700 (976)
||||||++.+++|...+..++..+++..|+|+||||+++.+..+...++..|..+.+.........+.+.+...... .+
T Consensus 167 IiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (394)
T 1fuu_A 167 ILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYK 246 (394)
T ss_dssp EEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhH
Confidence 99999999999999999999999999999999999999999889999999998887766555555555554433333 35
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCC
Q 002040 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDV 780 (976)
Q Consensus 701 ~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi 780 (976)
...+..++.. ...+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+
T Consensus 247 ~~~l~~~~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 247 YECLTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhc-CCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 5555555544 346799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHH
Q 002040 781 KELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLK 845 (976)
Q Consensus 781 ~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~ 845 (976)
|++++||+|++|+++..|+||+||+||.|++|.|++|+++.+...+..|.+.+......+|..+.
T Consensus 326 ~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 390 (394)
T 1fuu_A 326 QQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIA 390 (394)
T ss_dssp -----------------------------------------------------------------
T ss_pred ccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchh
Confidence 99999999999999999999999999999999999999999988888888887776666665443
No 11
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-50 Score=489.39 Aligned_cols=358 Identities=29% Similarity=0.527 Sum_probs=303.8
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~~i~~il--~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~ 551 (976)
|++.++.+|..+||..|+|+|.++|+.++ .++++|++||||+|||++|++|++..+..... ....++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 78899999999999999999999999876532 2234679999999999
Q ss_pred HHHHHHHHHHHHHhh----cCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 552 La~Q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
||.|++..+..++.. ..+.+..++||.....++..+.. +++|+||||++|.+++... ....+..+.+||||||
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--SNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--HHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc--cccccccCCEEEEECh
Confidence 999999999998743 35678889999998888777754 7899999999999988653 1245788999999999
Q ss_pred ccccccCCchHHHHHHHhcC-------CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCc----ccccCCceEEEEec
Q 002040 627 DRMFDMGFEPQITRIVQNIR-------PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR----SVVNKDITQLVEVR 695 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~-------~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~----~~~~~~i~q~~~~~ 695 (976)
|+|++++|...+..|+..++ +..|+|+||||+++.+..++..++..+..+.+... ......+.+.+...
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 264 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 264 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEe
Confidence 99999999999988877653 36799999999999999999999998876655432 22333455555444
Q ss_pred Cc-chHHHHHH----HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC---CCCceeccCCCCHHHHHHHHHHhccCCccE
Q 002040 696 PE-SDRFLRLL----ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (976)
Q Consensus 696 ~~-~~k~~~l~----~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~v 767 (976)
.. ..+...++ ..+.......++||||+++..|+.++..|... ++.+..+||+|++.+|..++..|++|.++|
T Consensus 265 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~v 344 (579)
T 3sqw_A 265 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 344 (579)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred cchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeE
Confidence 33 33333333 33333344679999999999999999999887 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHh
Q 002040 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (976)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (976)
||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..++..|.+...
T Consensus 345 LVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 345 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999998888888877654
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.6e-50 Score=482.71 Aligned_cols=358 Identities=29% Similarity=0.521 Sum_probs=302.2
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~~i~~il--~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~ 551 (976)
|++.++..|..+||..|+|+|.++|+.++ .++++|++||||||||++|++|++.++...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998875421 234678999999999
Q ss_pred HHHHHHHHHHHHHhh----cCcEEEEeeCCCChHHHHHHHh-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 552 LVQQIHSDIRKFAKV----MGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 552 La~Q~~~~~~~~~~~----~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
||.|++..+..++.. .++.+..++||.....++..+. .+++|+||||++|.+++... ....+..+.+||||||
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~~lViDEa 235 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY--SNKFFRFVDYKVLDEA 235 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH--HHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc--cccccccceEEEEeCH
Confidence 999999999998653 2467888999998888776664 47899999999999988653 1235788999999999
Q ss_pred ccccccCCchHHHHHHHhc-------CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCc----ccccCCceEEEEec
Q 002040 627 DRMFDMGFEPQITRIVQNI-------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR----SVVNKDITQLVEVR 695 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~-------~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~----~~~~~~i~q~~~~~ 695 (976)
|+|++++|.+.+..++..+ .+..|+|+||||+++.+..++..++..+..+.+... ......+.+.+...
T Consensus 236 h~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (563)
T 3i5x_A 236 DRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVIS 315 (563)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEE
T ss_pred HHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEEC
Confidence 9999999999998887665 236799999999999999999999988866655322 22233455555444
Q ss_pred Cc-chHHHHHHH----HHHhhhcCCcEEEEecCHHHHHHHHHHHHHC---CCCceeccCCCCHHHHHHHHHHhccCCccE
Q 002040 696 PE-SDRFLRLLE----LLGEWYEKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNL 767 (976)
Q Consensus 696 ~~-~~k~~~l~~----~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~v 767 (976)
.. ..++..++. .+......+++||||+++..|+.++..|... ++.+..+||+|++.+|..+++.|++|.++|
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 33 333333333 3333345679999999999999999999886 899999999999999999999999999999
Q ss_pred EEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHh
Q 002040 768 LIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALE 834 (976)
Q Consensus 768 LVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (976)
||||+++++|||+|++++||+|++|.++..|+||+|||||.|+.|.|++|+++.+..++..|.+.+.
T Consensus 396 LvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 396 LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp EEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred EEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999988888888777654
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=7e-52 Score=489.13 Aligned_cols=366 Identities=28% Similarity=0.476 Sum_probs=178.0
Q ss_pred CcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 002040 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~ 541 (976)
.++.+|..++|++.++..|..+||..|+|+|.++|+.++.+ +++|++|+||||||++|++|++..+... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 34678999999999999999999999999999999999987 8999999999999999999999876542 3467
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
++|||+||++||.|++..+..+.... ++.+.+.+++...... ...+++|+||||++|.+++... ....+.++++
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~ 238 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKL--KFIDPKKIKV 238 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTS--CCCCGGGCCE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhc--CCcCcccCCE
Confidence 89999999999999999999988754 5677777777654321 1335799999999999988553 2356789999
Q ss_pred EEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCc-c
Q 002040 621 LVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPE-S 698 (976)
Q Consensus 621 vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~-~ 698 (976)
|||||||+|++ .+|...+..++..+++.+|+|+||||++..+..++..++.++..+.+.........+.+.+..... .
T Consensus 239 iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 318 (479)
T 3fmp_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRD 318 (479)
T ss_dssp EEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC--------------------
T ss_pred EEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHH
Confidence 99999999987 678888889999999999999999999999999999999999888887766666666666655443 4
Q ss_pred hHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccC
Q 002040 699 DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (976)
Q Consensus 699 ~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~Gl 778 (976)
.++..|..++... ..+++||||+++..|..++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++||
T Consensus 319 ~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~Gl 397 (479)
T 3fmp_B 319 EKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGI 397 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCC
Confidence 5666666665543 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCCCC------CHHHHHHHhcccCCCCCccEEEEEecCCC-cCchHHHHHHHhhccCCC
Q 002040 779 DVKELELVINFDAPN------HYEDYVHRVGRTGRAGRKGCAITFISEED-AKYSPDLVKALELSEQVV 840 (976)
Q Consensus 779 Di~~v~~VI~~d~p~------s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~i~~~l~~~~~~v 840 (976)
|+|++++||+||+|+ +...|+||+||+||.|+.|.|++|+++.+ ..++..|.+.+......+
T Consensus 398 Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l 466 (479)
T 3fmp_B 398 DVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERL 466 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceEC
Confidence 999999999999995 56899999999999999999999998654 666667766665444333
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.1e-48 Score=432.40 Aligned_cols=334 Identities=34% Similarity=0.584 Sum_probs=287.1
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
|++.|.+.|..+||..|+|+|.++++.+++++++++++|||+|||++|++|++.. ++++||++||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5678999999999999999999999999999999999999999999999998864 56799999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC
Q 002040 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG 633 (976)
Q Consensus 554 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~ 633 (976)
.||+..+..++..+++.+..++|+.....+...+.. ++|+|+||+.|..++.... ..+..+++|||||||++.+++
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGV---IDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTS---CCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCC---cchhhCcEEEEEChHHhhccc
Confidence 999999999988889999999999988877666654 8999999999998876532 457789999999999999999
Q ss_pred CchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc
Q 002040 634 FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE 713 (976)
Q Consensus 634 f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~ 713 (976)
|...+..++..++...++++||||+++.+..+...++..+..+... .....+.+.+.......+ ..+..+.. ..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~ 219 (337)
T 2z0m_A 146 FIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQALRE-NK 219 (337)
T ss_dssp CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHHHHT-CC
T ss_pred cHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHHHHh-CC
Confidence 9999999999999999999999999999998999999888766432 223344454444433322 22333333 35
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN 793 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~ 793 (976)
.+++||||++...++.++..|. .+..+||+++..+|..+++.|++|.++|||||+++++|||+|++++||+|++|+
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 6799999999999999998885 688999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHH
Q 002040 794 HYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKAL 833 (976)
Q Consensus 794 s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l 833 (976)
++..|+||+||+||.|+.|.|++|++ .+..++..|.+.+
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC---
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHh
Confidence 99999999999999999999999999 6666666665554
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.4e-47 Score=458.79 Aligned_cols=346 Identities=21% Similarity=0.328 Sum_probs=284.8
Q ss_pred CCccccccc--CCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 002040 463 PKPIKTWHQ--TGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (976)
Q Consensus 463 p~pi~~~~~--~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~ 539 (976)
+.....|.. +++++.+...|+. +||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++..
T Consensus 15 ~~~~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~----------- 83 (591)
T 2v1x_A 15 DSSPAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS----------- 83 (591)
T ss_dssp -CCGGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------
T ss_pred CcchhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------
Confidence 344556654 7888999999998 79999999999999999999999999999999999999999742
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHH---H---hcCCeEEEeCchhHH------HHHHh
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---L---KRGTEIVVCTPGRMI------DILCT 607 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~~Iiv~Tp~~L~------~~l~~ 607 (976)
++.+|||+||++|+.|++..+..+ |+.+..++|+......... + ..+++|+|+||++|. +.+..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~ 159 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 159 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh
Confidence 458999999999999999998875 8889999999877655322 2 346899999999874 22221
Q ss_pred cCCcccccCCceEEEecCcccccccC--CchHHHH--HHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCccc
Q 002040 608 SGGKITNLRRVTYLVMDEADRMFDMG--FEPQITR--IVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSV 683 (976)
Q Consensus 608 ~~~~~~~l~~~~~vVlDEah~~~~~~--f~~~i~~--il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~ 683 (976)
...+..+.+|||||||++++|| |.+.+.. ++....+..++|+||||+++.+...+..++..+..+.+.. ..
T Consensus 160 ----~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~-~~ 234 (591)
T 2v1x_A 160 ----AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA-SF 234 (591)
T ss_dssp ----HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC-CC
T ss_pred ----hhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec-CC
Confidence 2456789999999999999988 8887665 5556667899999999999998887777776553332221 23
Q ss_pred ccCCceEEEEecCc--chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhc
Q 002040 684 VNKDITQLVEVRPE--SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761 (976)
Q Consensus 684 ~~~~i~q~~~~~~~--~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~ 761 (976)
...++...+..... ..++..|+.+|......+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.
T Consensus 235 ~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~ 314 (591)
T 2v1x_A 235 NRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWS 314 (591)
T ss_dssp CCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHH
Confidence 33444433333322 3455667777765556789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHH
Q 002040 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPD 828 (976)
Q Consensus 762 ~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~ 828 (976)
+|.++|||||+++++|||+|+|++||+|++|.++..|+|++||+||.|.+|.|++||++.|...+..
T Consensus 315 ~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~ 381 (591)
T 2v1x_A 315 ANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISS 381 (591)
T ss_dssp TTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred cCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998766544333
No 16
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-48 Score=461.51 Aligned_cols=368 Identities=29% Similarity=0.452 Sum_probs=263.7
Q ss_pred CCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 002040 462 VPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (976)
Q Consensus 462 ~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~ 539 (976)
.|.++..|...++++.+...|...||..|+++|.++|+.++.+ +++|++++||||||++|+++++..+... ..
T Consensus 114 ~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~~ 188 (508)
T 3fho_A 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----VP 188 (508)
T ss_dssp -------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----CC
T ss_pred cccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----CC
Confidence 3556667778889999999999999999999999999999998 9999999999999999999999887643 24
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCce
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~ 619 (976)
++++|||+|+++|+.|+++.+..++...++.+...+++..... ...+++|+|+||+.|..++.... ..+..++
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~---~~~~~~~ 261 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQ---LDARDIK 261 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTC---SCCTTCC
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCC---ccccCCC
Confidence 6789999999999999999999998877777776666553322 23468999999999998886543 4578899
Q ss_pred EEEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEec-Cc
Q 002040 620 YLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVR-PE 697 (976)
Q Consensus 620 ~vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~-~~ 697 (976)
+|||||||++.+ .+|...+..++..+++..|+|+||||+++.+..+...++..+..+.+.........+.+.+... ..
T Consensus 262 lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 262 VFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp EEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--C
T ss_pred EEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCch
Confidence 999999999887 6788999999999999999999999999999999999999998877766655555565555544 44
Q ss_pred chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccccc
Q 002040 698 SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARG 777 (976)
Q Consensus 698 ~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~G 777 (976)
..+...+..++.. ...+++||||+++..+..++..|...++.+..+||++++.+|..+++.|++|.++|||||+++++|
T Consensus 342 ~~k~~~l~~ll~~-~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~G 420 (508)
T 3fho_A 342 EHKYNVLVELYGL-LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420 (508)
T ss_dssp HHHHHHHHHHHC----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----
T ss_pred HHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcC
Confidence 5566666666544 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEeCCC------CCHHHHHHHhcccCCCCCccEEEEEecC-CCcCchHHHHHHHhhccCCCCh
Q 002040 778 LDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKGCAITFISE-EDAKYSPDLVKALELSEQVVPD 842 (976)
Q Consensus 778 lDi~~v~~VI~~d~p------~s~~~y~Qr~GR~gR~g~~g~~~~~~~~-~d~~~~~~i~~~l~~~~~~vp~ 842 (976)
||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++ .+...+..+.+.+......+|.
T Consensus 421 iDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~ 492 (508)
T 3fho_A 421 IDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPT 492 (508)
T ss_dssp CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC----
T ss_pred CCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCC
Confidence 999999999999999 7899999999999999999999999984 5677788888887766666664
No 17
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=4.3e-46 Score=431.37 Aligned_cols=324 Identities=25% Similarity=0.334 Sum_probs=266.9
Q ss_pred HHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHH
Q 002040 479 METIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (976)
Q Consensus 479 ~~~l~~-~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 557 (976)
.+.++. ++| .|+|+|.++|+.++.|+++|+++|||||||++|++|++..+. .++++|||+||++||.|++
T Consensus 11 ~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 11 RSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHHHH
Confidence 344554 566 799999999999999999999999999999999999887652 3678999999999999999
Q ss_pred HHHHHHHhhcCcEEEEeeCCCCh---HHHHHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccc---
Q 002040 558 SDIRKFAKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMF--- 630 (976)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~--- 630 (976)
..+..++. .++.+..++||.+. ..++..+..+ ++|+|+||++|.+++.. ..+.++++|||||||++.
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~iViDEaH~~~~~~ 155 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKAS 155 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-----HTTCCCSEEEESCHHHHHHCH
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-----hccccccEEEEeChHhhhhcc
Confidence 99999888 89999999999988 5566677666 89999999999887753 456789999999998654
Q ss_pred -------c-cCCchH-HHHHHHhcC-----------CCCcEEEEecc-CcHHHH-HHHHHHcCCCeEEEeCCcccccCCc
Q 002040 631 -------D-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKDI 688 (976)
Q Consensus 631 -------~-~~f~~~-i~~il~~~~-----------~~~q~i~~SAT-~~~~~~-~l~~~~l~~~~~i~~~~~~~~~~~i 688 (976)
+ ++|.+. +..++..++ +..|+|+|||| +|..+. .+...++. +.+.........+
T Consensus 156 ~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i 231 (414)
T 3oiy_A 156 RNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNI 231 (414)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSE
T ss_pred chhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccc
Confidence 4 788888 788888876 88999999999 554433 23333333 2223333444556
Q ss_pred eEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCce-eccCCCCHHHHHHHHHHhccCCccE
Q 002040 689 TQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCNL 767 (976)
Q Consensus 689 ~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~v 767 (976)
.+.+... .+...|..+|.. .++++||||+++..|+.++..|...|+.+. .+||. +|. +..|++|.++|
T Consensus 232 ~~~~~~~---~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~v 300 (414)
T 3oiy_A 232 THVRISS---RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINI 300 (414)
T ss_dssp EEEEESS---CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSE
T ss_pred hheeecc---CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeE
Confidence 6666554 455566666666 358999999999999999999999999998 99995 444 99999999999
Q ss_pred EEe----cCcccccCCCCC-CcEEEEeCCC--CCHHHHHHHhcccCCCC----CccEEEEEecCCCcCchHHHHHHHh
Q 002040 768 LIA----TSVAARGLDVKE-LELVINFDAP--NHYEDYVHRVGRTGRAG----RKGCAITFISEEDAKYSPDLVKALE 834 (976)
Q Consensus 768 LVa----T~v~~~GlDi~~-v~~VI~~d~p--~s~~~y~Qr~GR~gR~g----~~g~~~~~~~~~d~~~~~~i~~~l~ 834 (976)
||| |+++++|||+|+ +++||+|++| .++..|+||+||+||.| ..|.|++|+ .+...+..|.+.+.
T Consensus 301 Lvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 301 LIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred EEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999 999999999999 9999999999 99999999999999987 489999999 55666667776665
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.8e-45 Score=434.62 Aligned_cols=341 Identities=20% Similarity=0.321 Sum_probs=277.2
Q ss_pred cccccCCCCHHHHHHHHH-cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 467 KTWHQTGLTSKIMETIRK-LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~-~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
.+|+.++|++.+...|.. +||..|+|+|.++|+.++.|+++|+++|||+|||++|++|++.. ++.+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 99999999999999999999999999999999999999998842 347899
Q ss_pred EccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH---HH-hcCCeEEEeCchhHHHHHHhcCCcccccCCceEE
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---EL-KRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~v 621 (976)
|+|+++|+.|++..+.. +|+.+..++++........ .+ ...++|+|+||++|....... ......+.+|
T Consensus 71 i~P~~aL~~q~~~~l~~----~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~---~l~~~~~~~v 143 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQA----NGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLE---HLAHWNPVLL 143 (523)
T ss_dssp ECSCHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHH---HHTTSCEEEE
T ss_pred ECChHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHH---HHhhCCCCEE
Confidence 99999999999998876 4788888888887655432 22 235899999999985321110 1234678999
Q ss_pred EecCcccccccC--CchHHHHH--HHhcCCCCcEEEEeccCcHHHHHHHHHHc--CCCeEEEeCCcccccCCceEEEEec
Q 002040 622 VMDEADRMFDMG--FEPQITRI--VQNIRPDRQTVLFSATFPRQVEILARKVL--NKPVEIQVGGRSVVNKDITQLVEVR 695 (976)
Q Consensus 622 VlDEah~~~~~~--f~~~i~~i--l~~~~~~~q~i~~SAT~~~~~~~l~~~~l--~~~~~i~~~~~~~~~~~i~q~~~~~ 695 (976)
||||||++.+|| |.+.+..+ +....+..++|+||||+++.+...+...+ ..+..+ +.. ....++. +.+.
T Consensus 144 ViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~--~~r~~l~--~~v~ 218 (523)
T 1oyw_A 144 AVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISS--FDRPNIR--YMLM 218 (523)
T ss_dssp EESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECC--CCCTTEE--EEEE
T ss_pred EEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCC--CCCCceE--EEEE
Confidence 999999999987 66665543 22334678999999999988755444433 344433 222 2233343 2333
Q ss_pred CcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 696 ~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
....+...++.+|... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.+|.++|||||++++
T Consensus 219 ~~~~~~~~l~~~l~~~-~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 219 EKFKPLDQLMRYVQEQ-RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp ECSSHHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred eCCCHHHHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 3456677788877654 456999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHH
Q 002040 776 RGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (976)
Q Consensus 776 ~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 831 (976)
+|||+|++++||+|++|.++..|+|++||+||.|.+|.|++|+++.+...+..++.
T Consensus 298 ~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 298 MGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp TTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred CCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999877655555443
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=4.5e-45 Score=435.57 Aligned_cols=373 Identities=18% Similarity=0.231 Sum_probs=288.5
Q ss_pred cCcccccccccchhhhcCCHHHHHHHHhhcCcee-ccCCCCCcccccccCCCCHHHHHHHH--------HcCCCCCcHHH
Q 002040 424 YQPFRKNFYIEVKEIARMTPEEVSAYRKQLELKI-HGKDVPKPIKTWHQTGLTSKIMETIR--------KLNYEKPMPIQ 494 (976)
Q Consensus 424 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~g~~~p~pi~~~~~~~l~~~l~~~l~--------~~~~~~p~~~Q 494 (976)
+.++-+.++...+.+..++.+++......+...+ .|.. +.+ .+..++. .+|| .|||+|
T Consensus 22 ~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~~-------ld~-----~l~ea~a~vrea~~r~lG~-~pt~VQ 88 (844)
T 1tf5_A 22 YEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGAT-------TDD-----LLVEAFAVVREASRRVTGM-FPFKVQ 88 (844)
T ss_dssp HHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTCC-------HHH-----HHHHHHHHHHHHHHHHHSC-CCCHHH
T ss_pred HHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCCC-------hHH-----HHHHHHHHHHHHHHHHcCC-CCcHHH
Confidence 4556666777788899999999988777766443 2321 111 1222222 5899 999999
Q ss_pred HHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEe
Q 002040 495 AQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPV 574 (976)
Q Consensus 495 ~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~ 574 (976)
..++|.++.|+ |+.++||+|||++|++|++.+.. .|+.|+|||||++||.|++.++..++..+|+++.++
T Consensus 89 ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 89 LMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp HHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999998 99999999999999999985543 256799999999999999999999999999999999
Q ss_pred eCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCC---cccccCCceEEEecCccccc-ccC---------------C
Q 002040 575 YGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DMG---------------F 634 (976)
Q Consensus 575 ~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~---~~~~l~~~~~vVlDEah~~~-~~~---------------f 634 (976)
+||.+...+.. ..+++|+|+||++| +++|..+-. ....+..+.++||||||+|+ +++ |
T Consensus 159 ~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~ 236 (844)
T 1tf5_A 159 LNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKL 236 (844)
T ss_dssp CTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHH
T ss_pred eCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccchhH
Confidence 99998765433 34699999999999 777765421 23457889999999999988 775 4
Q ss_pred chHHHHHHHhcCC---------CCcEE-----------------EEeccCcHHHHHH-----HHHHcC-CCeEEE-----
Q 002040 635 EPQITRIVQNIRP---------DRQTV-----------------LFSATFPRQVEIL-----ARKVLN-KPVEIQ----- 677 (976)
Q Consensus 635 ~~~i~~il~~~~~---------~~q~i-----------------~~SAT~~~~~~~l-----~~~~l~-~~~~i~----- 677 (976)
...+..|+..+++ .+|++ +||||++..+..+ +..++. +..++.
T Consensus 237 ~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v 316 (844)
T 1tf5_A 237 YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQV 316 (844)
T ss_dssp HHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEE
T ss_pred HHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecCee
Confidence 5678889988873 67887 8999987533322 222332 111110
Q ss_pred --eC-----------------------------CcccccCCce-------------------------------------
Q 002040 678 --VG-----------------------------GRSVVNKDIT------------------------------------- 689 (976)
Q Consensus 678 --~~-----------------------------~~~~~~~~i~------------------------------------- 689 (976)
+. ........|.
T Consensus 317 ~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~IP 396 (844)
T 1tf5_A 317 VIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIP 396 (844)
T ss_dssp EEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEECC
T ss_pred EEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEEec
Confidence 00 0000000000
Q ss_pred ----------EEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHH
Q 002040 690 ----------QLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (976)
Q Consensus 690 ----------q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~ 758 (976)
+.+.+.....|+..|+..|.... ...++||||+|+..++.|+..|...|+++..|||++.+.++..+..
T Consensus 397 tn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ 476 (844)
T 1tf5_A 397 TNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEE 476 (844)
T ss_dssp CSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTT
T ss_pred CCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHH
Confidence 11234456778888888887643 4568999999999999999999999999999999998888876666
Q ss_pred HhccCCccEEEecCcccccCCCC--------CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 002040 759 DFKSNVCNLLIATSVAARGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (976)
Q Consensus 759 ~F~~g~~~vLVaT~v~~~GlDi~--------~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~ 823 (976)
.|+.| .|||||++|+||+||+ ++.+||+|+.|.+...|+||+||+||+|.+|.+++|++..|.
T Consensus 477 ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 477 AGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp TTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 66665 6999999999999999 889999999999999999999999999999999999998875
No 20
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-45 Score=460.83 Aligned_cols=329 Identities=18% Similarity=0.223 Sum_probs=259.1
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
.|..++++..+...+...++..|+|+|.++|+.|+.|+++|++|+||||||++|++|++..+.. ++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEc
Confidence 5666666666655556666678999999999999999999999999999999999999988743 67899999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 548 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
||++|+.|++..|..++. .+.+++|+... ..+++|+||||++|.+++.... ..+.++++|||||||
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~---~~l~~l~lVVIDEaH 300 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVH 300 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCS---SHHHHEEEEEEETGG
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCc---cccccCCEEEEhhhh
Confidence 999999999999998754 56678888753 3568999999999999887653 347789999999999
Q ss_pred cccccCCchHHHHHHHhcCCCCcEEEEeccCcHH--HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecC---------
Q 002040 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQ--VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP--------- 696 (976)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~--~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~--------- 696 (976)
+|.+++|...+..++..+++..|+|+||||+|+. +..++..+...+..+...... +..+.+.+....
T Consensus 301 ~l~d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 301 YMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp GTTSHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEEEEETTSSCCEEEEE
T ss_pred hccccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEeecCCcceeeeec
Confidence 9999999999999999999999999999999875 335555666666544432211 111222111100
Q ss_pred c----------------------------------------------chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHH
Q 002040 697 E----------------------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730 (976)
Q Consensus 697 ~----------------------------------------------~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l 730 (976)
. ...+..++..+.. ...+++||||+++..|+.+
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~-~~~~~vIVF~~sr~~~e~l 457 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK-KKYNPVIVFSFSKRDCEEL 457 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHh-cCCCCEEEEeCcHHHHHHH
Confidence 0 1222333333333 2346999999999999999
Q ss_pred HHHHHHCCCC---------------------------------------ceeccCCCCHHHHHHHHHHhccCCccEEEec
Q 002040 731 FRDLLKHGYP---------------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (976)
Q Consensus 731 ~~~L~~~~~~---------------------------------------~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 771 (976)
+..|...++. +..+||+|++.+|..++..|.+|.++|||||
T Consensus 458 a~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT 537 (1108)
T 3l9o_A 458 ALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFAT 537 (1108)
T ss_dssp HHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEE
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEEC
Confidence 9988543222 6889999999999999999999999999999
Q ss_pred CcccccCCCCCCcEEEEeCCC--------CCHHHHHHHhcccCCCC--CccEEEEEecCC
Q 002040 772 SVAARGLDVKELELVINFDAP--------NHYEDYVHRVGRTGRAG--RKGCAITFISEE 821 (976)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~d~p--------~s~~~y~Qr~GR~gR~g--~~g~~~~~~~~~ 821 (976)
+++++|||+|++++||+++.| .++..|+||+|||||.| ..|.||+++++.
T Consensus 538 ~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 538 ETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp SCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 999999999999999977663 46778999999999999 689999998765
No 21
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.2e-43 Score=423.03 Aligned_cols=331 Identities=20% Similarity=0.267 Sum_probs=205.9
Q ss_pred CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 486 NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 486 ~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
+...|+|+|.++|+.++.++++|+++|||||||++|++|++..+...+ .+.++++||||||++|+.||+..+..++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCc---ccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 345799999999999999999999999999999999999999887653 23367899999999999999999999999
Q ss_pred hcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHH-HHHHh
Q 002040 566 VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQN 644 (976)
Q Consensus 566 ~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~-~il~~ 644 (976)
..++.+..++|+.....+...+..+++|+|+||++|.+++.... ...+..+++|||||||++.++++...+. .++..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT--LTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS--CCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc--ccccccCCEEEEECCcccCCcchHHHHHHHHHHh
Confidence 88999999999998777777777779999999999999886532 2367889999999999998776433332 22221
Q ss_pred ----cCCCCcEEEEeccCcH-----------HHHHHHHHH------------------cCCCeEEEeCCcccccCC----
Q 002040 645 ----IRPDRQTVLFSATFPR-----------QVEILARKV------------------LNKPVEIQVGGRSVVNKD---- 687 (976)
Q Consensus 645 ----~~~~~q~i~~SAT~~~-----------~~~~l~~~~------------------l~~~~~i~~~~~~~~~~~---- 687 (976)
..+..++|+||||++. .+..+...+ ...|....+.........
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 1466899999999853 122222211 111111110000000000
Q ss_pred -----------------ceEEE----------------------------------------------------------
Q 002040 688 -----------------ITQLV---------------------------------------------------------- 692 (976)
Q Consensus 688 -----------------i~q~~---------------------------------------------------------- 692 (976)
+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000
Q ss_pred -----------------------------------------------EecCcchHHHHHHHHHHhh---hcCCcEEEEec
Q 002040 693 -----------------------------------------------EVRPESDRFLRLLELLGEW---YEKGKILIFVH 722 (976)
Q Consensus 693 -----------------------------------------------~~~~~~~k~~~l~~~l~~~---~~~~kvLIF~~ 722 (976)
.......|+..|..+|... ....++||||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0001245666777777654 34579999999
Q ss_pred CHHHHHHHHHHHHHC------------CCCceeccCCCCHHHHHHHHHHhcc-CCccEEEecCcccccCCCCCCcEEEEe
Q 002040 723 SQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVINF 789 (976)
Q Consensus 723 s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~~-g~~~vLVaT~v~~~GlDi~~v~~VI~~ 789 (976)
++..++.|+..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|+|++||+|
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~ 478 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLY 478 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEe
Confidence 999999999999875 5556677888999999999999999 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 002040 790 DAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (976)
Q Consensus 790 d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~ 823 (976)
|+|+|+..|+||+|| ||. +.|.||+|++..+.
T Consensus 479 d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~ 510 (556)
T 4a2p_A 479 EYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEV 510 (556)
T ss_dssp TCCSCHHHHHHC----------CCEEEEESCHHH
T ss_pred CCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcch
Confidence 999999999999999 999 79999999987543
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.2e-42 Score=427.53 Aligned_cols=336 Identities=20% Similarity=0.303 Sum_probs=265.1
Q ss_pred ccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 466 IKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 466 i~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
..+|.+++|++.+...+..+||..|+|+|.++|+. +..++++|++||||||||++|.++++..+... +.++|
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78999999999999999999999999887642 56899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
|++|+++||.|++..+..+ ..+|+.+..++|+....... + ..++|+||||++|..++.... ..+.++++||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiD 152 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRP---EWLNEVNYFVLD 152 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCC---GGGGGEEEEEEC
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCCh---hHhhccCEEEEe
Confidence 9999999999999999644 45689999999987654431 2 368999999999998887642 347889999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccC---------CceEEEEec
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNK---------DITQLVEVR 695 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~---------~i~q~~~~~ 695 (976)
|||.+.+.++...+..++..++ +.|+|+||||+++. ..++. ++..+. +.....+.+.. .....+.+.
T Consensus 153 E~H~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 228 (715)
T 2va8_A 153 ELHYLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEP-VATNWRPVPLIEGVIYPERKKKEYNVIFK 228 (715)
T ss_dssp SGGGGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEE-EECCCCSSCEEEEEEEECSSTTEEEEEET
T ss_pred chhhcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCc-cCCCCCCCCceEEEEecCCcccceeeecC
Confidence 9999988888888888887776 78999999999853 44444 343322 12211111100 000011111
Q ss_pred C--------cchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCC-----------------------------
Q 002040 696 P--------ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHG----------------------------- 738 (976)
Q Consensus 696 ~--------~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~----------------------------- 738 (976)
. ....+..+...+ ..++++||||+++..++.++..|....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 305 (715)
T 2va8_A 229 DNTTKKVHGDDAIIAYTLDSL---SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKE 305 (715)
T ss_dssp TSCEEEEESSSHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHH
T ss_pred cchhhhcccchHHHHHHHHHH---hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccH
Confidence 1 123333343433 246899999999999999999998642
Q ss_pred -------CCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eC-------CCCCHHHHHH
Q 002040 739 -------YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD-------APNHYEDYVH 800 (976)
Q Consensus 739 -------~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d-------~p~s~~~y~Q 800 (976)
+.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|++.+||+ || .|.+..+|+|
T Consensus 306 ~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Q 385 (715)
T 2va8_A 306 LLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQ 385 (715)
T ss_dssp HHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHH
T ss_pred HHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHH
Confidence 35889999999999999999999999999999999999999999999999 99 8999999999
Q ss_pred HhcccCCCC--CccEEEEEecCCC
Q 002040 801 RVGRTGRAG--RKGCAITFISEED 822 (976)
Q Consensus 801 r~GR~gR~g--~~g~~~~~~~~~d 822 (976)
|+|||||.| ..|.||+|++..+
T Consensus 386 r~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 386 MSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HhhhcCCCCCCCCceEEEEeCCch
Confidence 999999988 4799999998754
No 23
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.2e-42 Score=417.65 Aligned_cols=331 Identities=23% Similarity=0.289 Sum_probs=233.2
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
..|+|+|.++|+.++.|+++|++++||+|||++|++|++..+...+ ...++++||||||++|+.||+..+..++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---CGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---cCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 3699999999999999999999999999999999999999988653 2347789999999999999999999999988
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCC-chHHHHHHHhc-
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGF-EPQITRIVQNI- 645 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f-~~~i~~il~~~- 645 (976)
++.+..++|+.....+...+..+++|+|+||++|..++.... ...+..+.+|||||||++.+.+. ...+..++...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~--~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA--IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKL 157 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS--SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc--ccccccCCEEEEECccccCCcchHHHHHHHHHHhhh
Confidence 999999999997776666676779999999999999886542 22677899999999999987652 22222333322
Q ss_pred ----CCCCcEEEEeccCcHH-----------HHHHHHHHcCCCeEEEeCCc-----ccccCCceEEEEec----------
Q 002040 646 ----RPDRQTVLFSATFPRQ-----------VEILARKVLNKPVEIQVGGR-----SVVNKDITQLVEVR---------- 695 (976)
Q Consensus 646 ----~~~~q~i~~SAT~~~~-----------~~~l~~~~l~~~~~i~~~~~-----~~~~~~i~q~~~~~---------- 695 (976)
.+..++|+||||++.. +..+. ..+..+........ ............+.
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLC-AALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCI 236 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHH-HHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHH-HhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHH
Confidence 2567999999999542 11111 11221111111100 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 002040 696 -------------------------------------------------------------------------------- 695 (976)
Q Consensus 696 -------------------------------------------------------------------------------- 695 (976)
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 316 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALII 316 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ---------------------------------------------------CcchHHHHHHHHHHhhh---cCCcEEEEe
Q 002040 696 ---------------------------------------------------PESDRFLRLLELLGEWY---EKGKILIFV 721 (976)
Q Consensus 696 ---------------------------------------------------~~~~k~~~l~~~l~~~~---~~~kvLIF~ 721 (976)
....|+..|..+|.... ..+++||||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~ 396 (555)
T 3tbk_A 317 SEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFV 396 (555)
T ss_dssp HHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred hhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEe
Confidence 12456666777776543 457999999
Q ss_pred cCHHHHHHHHHHHHHCC------------CCceeccCCCCHHHHHHHHHHhcc-CCccEEEecCcccccCCCCCCcEEEE
Q 002040 722 HSQEKCDALFRDLLKHG------------YPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (976)
Q Consensus 722 ~s~~~~~~l~~~L~~~~------------~~~~~lhg~~~~~~R~~~~~~F~~-g~~~vLVaT~v~~~GlDi~~v~~VI~ 788 (976)
++...++.|+..|...+ ..+..+||+|++.+|..++..|++ |.++|||||+++++|||+|+|++||+
T Consensus 397 ~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 397 KTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred CcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE
Confidence 99999999999999864 344556679999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCch
Q 002040 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYS 826 (976)
Q Consensus 789 ~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~ 826 (976)
||+|+|+..|+||+|| ||. ..|.||+|+++.+....
T Consensus 477 ~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 477 YEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp ESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHH
T ss_pred eCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHH
Confidence 9999999999999999 998 79999999987655433
No 24
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=1.3e-42 Score=412.94 Aligned_cols=368 Identities=19% Similarity=0.226 Sum_probs=255.0
Q ss_pred chhhhcCCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHH-----HHHcCCCCCcHHHHHHHHHHhcCCCEEE
Q 002040 435 VKEIARMTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMET-----IRKLNYEKPMPIQAQALPVIMSGRDCIG 509 (976)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~-----l~~~~~~~p~~~Q~~~i~~il~g~d~i~ 509 (976)
.+.+..++.+++......+...+.... ++.++ | +..... ...+|. .|+|+|..++|.+++|+ |+
T Consensus 24 e~~~~~lsd~eL~~kt~~fk~rl~~g~------~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Ia 92 (853)
T 2fsf_A 24 EPEMEKLSDEELKGKTAEFRARLEKGE------VLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IA 92 (853)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHTTC------CHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EE
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHcCC------Chhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--ee
Confidence 456778888888776665553332211 12221 1 222221 223675 79999999999999998 99
Q ss_pred EcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc
Q 002040 510 VAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR 589 (976)
Q Consensus 510 ~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~ 589 (976)
.++||+|||++|++|++.... .++.|+|||||++||.|++.++..++..+|+++.+++||.+... ..+..
T Consensus 93 em~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~--r~~~~ 162 (853)
T 2fsf_A 93 EMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPA--KREAY 162 (853)
T ss_dssp ECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHH--HHHHH
T ss_pred eecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHH--HHHhc
Confidence 999999999999999986543 25679999999999999999999999999999999999998653 34445
Q ss_pred CCeEEEeCchhH-HHHHHhcCC---cccccCCceEEEecCccccc-ccC---------------CchHHHHHHHhcCC--
Q 002040 590 GTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DMG---------------FEPQITRIVQNIRP-- 647 (976)
Q Consensus 590 ~~~Iiv~Tp~~L-~~~l~~~~~---~~~~l~~~~~vVlDEah~~~-~~~---------------f~~~i~~il~~~~~-- 647 (976)
+++|+||||++| +++|..+.. ....++.+.++||||||+|+ +++ |...+..|+..++.
T Consensus 163 ~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~ 242 (853)
T 2fsf_A 163 AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQE 242 (853)
T ss_dssp HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----------------------
T ss_pred CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhh
Confidence 699999999999 788875421 12457889999999999998 544 55677788877764
Q ss_pred ------------------CCcEE------------------------EEeccCcHHHHHH-----HHHHcC---------
Q 002040 648 ------------------DRQTV------------------------LFSATFPRQVEIL-----ARKVLN--------- 671 (976)
Q Consensus 648 ------------------~~q~i------------------------~~SAT~~~~~~~l-----~~~~l~--------- 671 (976)
.+|++ +||||++..+..+ +..++.
T Consensus 243 ~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d 322 (853)
T 2fsf_A 243 KEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKD 322 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeec
Confidence 45654 8999976432211 111111
Q ss_pred ------------------------CC----eEEEeCCcccccCCce----------------------------------
Q 002040 672 ------------------------KP----VEIQVGGRSVVNKDIT---------------------------------- 689 (976)
Q Consensus 672 ------------------------~~----~~i~~~~~~~~~~~i~---------------------------------- 689 (976)
.+ ..+.+.........|.
T Consensus 323 ~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv 402 (853)
T 2fsf_A 323 GEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTV 402 (853)
T ss_dssp ----------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEE
T ss_pred CcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEE
Confidence 01 0111111110001111
Q ss_pred -------------EEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHH
Q 002040 690 -------------QLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRES 755 (976)
Q Consensus 690 -------------q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~ 755 (976)
+.+.+.....|+..|+..|.... .+.++||||+|+..++.|+..|...|+++.+|||.+.+.++..
T Consensus 403 ~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~i 482 (853)
T 2fsf_A 403 VVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAI 482 (853)
T ss_dssp ECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHH
T ss_pred EcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHH
Confidence 11234556778999998887654 3568999999999999999999999999999999999888888
Q ss_pred HHHHhccCCccEEEecCcccccCCCCCC-------------------------------------cEEEEeCCCCCHHHH
Q 002040 756 TISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------ELVINFDAPNHYEDY 798 (976)
Q Consensus 756 ~~~~F~~g~~~vLVaT~v~~~GlDi~~v-------------------------------------~~VI~~d~p~s~~~y 798 (976)
+...|+.| .|+|||++|+||+||+.. .+||+|+.|.+...|
T Consensus 483 ia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy 560 (853)
T 2fsf_A 483 VAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRID 560 (853)
T ss_dssp HHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHH
T ss_pred HHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHH
Confidence 88899988 599999999999999974 699999999999999
Q ss_pred HHHhcccCCCCCccEEEEEecCCCcCc
Q 002040 799 VHRVGRTGRAGRKGCAITFISEEDAKY 825 (976)
Q Consensus 799 ~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 825 (976)
+|++||+||.|.+|.+++|++..|..+
T Consensus 561 ~qr~GRTGRqGd~G~s~~fls~eD~l~ 587 (853)
T 2fsf_A 561 NQLRGRSGRQGDAGSSRFYLSMEDALM 587 (853)
T ss_dssp HHHHTTSSGGGCCEEEEEEEETTSGGG
T ss_pred HhhccccccCCCCeeEEEEecccHHHH
Confidence 999999999999999999999877543
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.5e-43 Score=435.65 Aligned_cols=338 Identities=22% Similarity=0.279 Sum_probs=224.8
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 480 ETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 480 ~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
..+..+||..|+|+|.++|++++.|+++|+++|||+|||++|++|++.++...+ .+.++++|||+||++|+.||+..
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFP---QGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSC---TTCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCc---cCCCCeEEEEECCHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999887653 12346899999999999999999
Q ss_pred HHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC-CchHH
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG-FEPQI 638 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~-f~~~i 638 (976)
+.+++...++.+..++||.....+...+..+++|+||||++|.+.+.... ...+..+++|||||||++.+.. +...+
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~--~~~l~~~~~vViDEaH~~~~~~~~~~i~ 158 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT--IPSLSIFTLMIFDECHNTSKQHPYNMIM 158 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTS--SCCGGGCSEEEEETGGGCSTTCHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCc--ccccccccEEEEeCCCcccCcccHHHHH
Confidence 99999888999999999987666666666789999999999999886532 2257889999999999987554 11222
Q ss_pred HHHHHh-----cCCCCcEEEEeccCc-------HH-HHHHHHH---------------------HcCCCeEEEeCCcc--
Q 002040 639 TRIVQN-----IRPDRQTVLFSATFP-------RQ-VEILARK---------------------VLNKPVEIQVGGRS-- 682 (976)
Q Consensus 639 ~~il~~-----~~~~~q~i~~SAT~~-------~~-~~~l~~~---------------------~l~~~~~i~~~~~~-- 682 (976)
...+.. ..+..++|+||||+. .. +..+... +...|.........
T Consensus 159 ~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~ 238 (696)
T 2ykg_A 159 FNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRI 238 (696)
T ss_dssp HHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCS
T ss_pred HHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCccc
Confidence 222222 246789999999986 11 2222111 11112111000000
Q ss_pred c-------c-----------------------------------------------------------------------
Q 002040 683 V-------V----------------------------------------------------------------------- 684 (976)
Q Consensus 683 ~-------~----------------------------------------------------------------------- 684 (976)
. .
T Consensus 239 ~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 318 (696)
T 2ykg_A 239 SDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRK 318 (696)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHH
Confidence 0 0
Q ss_pred -------------------------------cCCceEEEE----------------ecCcchHHHHHHHHHHhhh---cC
Q 002040 685 -------------------------------NKDITQLVE----------------VRPESDRFLRLLELLGEWY---EK 714 (976)
Q Consensus 685 -------------------------------~~~i~q~~~----------------~~~~~~k~~~l~~~l~~~~---~~ 714 (976)
...+.+.+. ......|+..|..+|.... ..
T Consensus 319 ~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~ 398 (696)
T 2ykg_A 319 YNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPE 398 (696)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTT
T ss_pred HhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCC
Confidence 000000000 0013457777777777653 45
Q ss_pred CcEEEEecCHHHHHHHHHHHHHCC----CCceec--------cCCCCHHHHHHHHHHhcc-CCccEEEecCcccccCCCC
Q 002040 715 GKILIFVHSQEKCDALFRDLLKHG----YPCLSL--------HGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVK 781 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~~----~~~~~l--------hg~~~~~~R~~~~~~F~~-g~~~vLVaT~v~~~GlDi~ 781 (976)
+++||||+++..++.|+..|...+ +.+..+ ||+|++.+|..+++.|++ |.++|||||+++++|||||
T Consensus 399 ~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip 478 (696)
T 2ykg_A 399 TITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIA 478 (696)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---C
T ss_pred CcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCc
Confidence 799999999999999999999988 888888 559999999999999998 9999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcC
Q 002040 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (976)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~ 824 (976)
++++||+||+|+++..|+||+|| ||. +.|.|++|++..+..
T Consensus 479 ~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 479 QCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVI 519 (696)
T ss_dssp CCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHH
T ss_pred cCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHH
Confidence 99999999999999999999999 998 689999999876543
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-42 Score=428.29 Aligned_cols=332 Identities=21% Similarity=0.285 Sum_probs=268.8
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~-il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
+|.+++|++.+.+.+..+||..|+|+|.++|+. +..++++|++||||||||++|.+|++..+... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88999999999999999999999999887642 5689999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+|+++||.|++..+..+. .+|+.+..++|+...... ....++|+||||++|..++.... ..+.++++||||||
T Consensus 75 ~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~~~---~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRHGS---SWIKDVKILVADEI 147 (720)
T ss_dssp CSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHHTC---TTGGGEEEEEEETG
T ss_pred cCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHcCh---hhhhcCCEEEEECC
Confidence 999999999999997554 468999999997654332 12368999999999988876632 34778999999999
Q ss_pred ccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEE------EecC----
Q 002040 627 DRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLV------EVRP---- 696 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~------~~~~---- 696 (976)
|.+.++++...+..++..++...|+|+||||+++. ..++. ++..+. +.....+.+ +...+ .+..
T Consensus 148 H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~rp~~---l~~~~~~~~~~~~~~~~~~ 221 (720)
T 2zj8_A 148 HLIGSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDWRPVK---LRRGVFYQGFVTWEDGSID 221 (720)
T ss_dssp GGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCCCSSE---EEEEEEETTEEEETTSCEE
T ss_pred cccCCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCCCCCc---ceEEEEeCCeeeccccchh
Confidence 99998889999999998887789999999999863 33443 443221 111111111 11111 1111
Q ss_pred -cchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC---------------------------------CCCce
Q 002040 697 -ESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH---------------------------------GYPCL 742 (976)
Q Consensus 697 -~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~---------------------------------~~~~~ 742 (976)
.......+...+. .++++||||+++..|+.++..|... ...+.
T Consensus 222 ~~~~~~~~~~~~~~---~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 222 RFSSWEELVYDAIR---KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp ECSSTTHHHHHHHH---TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hhhHHHHHHHHHHh---CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 1233344444432 4689999999999999999998753 13588
Q ss_pred eccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eC----CCCCHHHHHHHhcccCCCC--Ccc
Q 002040 743 SLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD----APNHYEDYVHRVGRTGRAG--RKG 812 (976)
Q Consensus 743 ~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d----~p~s~~~y~Qr~GR~gR~g--~~g 812 (976)
.+||+|++.+|..+++.|.+|.++|||||+++++|||+|++.+||+ || .|.++..|+||+|||||.| ..|
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G 378 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVG 378 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEE
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCc
Confidence 9999999999999999999999999999999999999999999998 77 5899999999999999988 579
Q ss_pred EEEEEecCCC
Q 002040 813 CAITFISEED 822 (976)
Q Consensus 813 ~~~~~~~~~d 822 (976)
.||+|+++.+
T Consensus 379 ~~~~l~~~~~ 388 (720)
T 2zj8_A 379 EGIIVSTSDD 388 (720)
T ss_dssp EEEEECSSSC
T ss_pred eEEEEecCcc
Confidence 9999998766
No 27
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5.5e-42 Score=428.01 Aligned_cols=331 Identities=19% Similarity=0.258 Sum_probs=212.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+..|+|+|.++|+.++.|+++|++++||||||++|++|++.++...+ .+.++++||||||++|+.||+..|..++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999988653 2346789999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHH-HHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~-~il~ 643 (976)
...++.+..++|+.....+...+..+++|+||||++|.+.+... ....+..+++|||||||++.+.+....+. .++.
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~ 398 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--cccccccCCEEEEECccccCCCccHHHHHHHHHH
Confidence 98899999999999877777777778999999999999988653 22367889999999999988765332222 2222
Q ss_pred hc----CCCCcEEEEeccCcH-----------HHHHHHHH------------------HcCCCeEEEeCCcccccCC---
Q 002040 644 NI----RPDRQTVLFSATFPR-----------QVEILARK------------------VLNKPVEIQVGGRSVVNKD--- 687 (976)
Q Consensus 644 ~~----~~~~q~i~~SAT~~~-----------~~~~l~~~------------------~l~~~~~i~~~~~~~~~~~--- 687 (976)
.. .+..++|+||||++. .+..+... ++..|....+.........
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 21 566899999999852 22222211 1122211110000000000
Q ss_pred ---------------------c--eEEEE---------------------------------------------------
Q 002040 688 ---------------------I--TQLVE--------------------------------------------------- 693 (976)
Q Consensus 688 ---------------------i--~q~~~--------------------------------------------------- 693 (976)
+ .+...
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 00000
Q ss_pred -------------------------------------------------ecCcchHHHHHHHHHHhh---hcCCcEEEEe
Q 002040 694 -------------------------------------------------VRPESDRFLRLLELLGEW---YEKGKILIFV 721 (976)
Q Consensus 694 -------------------------------------------------~~~~~~k~~~l~~~l~~~---~~~~kvLIF~ 721 (976)
......|+..|..+|... ....++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 000244666677777653 2457999999
Q ss_pred cCHHHHHHHHHHHHHC------------CCCceeccCCCCHHHHHHHHHHhcc-CCccEEEecCcccccCCCCCCcEEEE
Q 002040 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (976)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~~-g~~~vLVaT~v~~~GlDi~~v~~VI~ 788 (976)
+++..++.|+.+|... |..+..+||+|++.+|..++..|++ |.++|||||+++++|||+|+|++||+
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE
Confidence 9999999999999873 5667778999999999999999999 99999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 789 ~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
||+|+|+..|+||+|| ||. ..|.||+|++..+
T Consensus 719 yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~ 750 (797)
T 4a2q_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (797)
T ss_dssp ESCCSCHHHHHTC---------CCCEEEEECCHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCc
Confidence 9999999999999999 999 7999999998754
No 28
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.4e-42 Score=435.04 Aligned_cols=373 Identities=24% Similarity=0.306 Sum_probs=285.2
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.+|| .|+|+|.++|+.++.|+|+|++|+||||||++|+++++..+. .++++|||+||++||.|++..+..|
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHh
Confidence 4677 599999999999999999999999999999988888877652 3678999999999999999999998
Q ss_pred HhhcCcEEEEeeCCCCh---HHHHHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccc----------
Q 002040 564 AKVMGVRCVPVYGGSGV---AQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM---------- 629 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~---------- 629 (976)
+ ..++.+.+++||.+. ..++..+..+ ++|+||||++|.+++.. ..+.++++|||||||++
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-----l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-----LSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-----HHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred h-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-----hcccCcCEEEEeCCCccccccccchhh
Confidence 7 778999999999988 6677778776 89999999999888753 46778999999999754
Q ss_pred cc-cCCchH-HHHHHHhcC-----------CCCcEEEEecc-CcHHHH-HHHHHHcCCCeEEEeCCcccccCCceEEEEe
Q 002040 630 FD-MGFEPQ-ITRIVQNIR-----------PDRQTVLFSAT-FPRQVE-ILARKVLNKPVEIQVGGRSVVNKDITQLVEV 694 (976)
Q Consensus 630 ~~-~~f~~~-i~~il~~~~-----------~~~q~i~~SAT-~~~~~~-~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~ 694 (976)
++ +||... +..++..++ +..|+|+|||| +|..+. .+...++. +.+.........+.+.+..
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRIS 294 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEES
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEe
Confidence 45 899998 888988877 88999999999 555443 23333333 3333344455667776665
Q ss_pred cCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCce-eccCCCCHHHHHHHHHHhccCCccEEEe---
Q 002040 695 RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCL-SLHGAKDQTDRESTISDFKSNVCNLLIA--- 770 (976)
Q Consensus 695 ~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~-~lhg~~~~~~R~~~~~~F~~g~~~vLVa--- 770 (976)
. .+...|..+|... ++++||||+++..++.|+..|...|+.+. .+|| +|.. ++.|++|.++||||
T Consensus 295 ~---~k~~~L~~ll~~~--~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas 363 (1104)
T 4ddu_A 295 S---RSKEKLVELLEIF--RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQA 363 (1104)
T ss_dssp C---CCHHHHHHHHHHH--CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETT
T ss_pred c---CHHHHHHHHHHhc--CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecC
Confidence 5 4556667777663 58999999999999999999999999998 9999 2555 99999999999999
Q ss_pred -cCcccccCCCCC-CcEEEEeCCCC-------------------------------------------------------
Q 002040 771 -TSVAARGLDVKE-LELVINFDAPN------------------------------------------------------- 793 (976)
Q Consensus 771 -T~v~~~GlDi~~-v~~VI~~d~p~------------------------------------------------------- 793 (976)
|+++++|||||+ |++|||||+|.
T Consensus 364 ~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~ 443 (1104)
T 4ddu_A 364 YYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKE 443 (1104)
T ss_dssp THHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 999999999999 99999999998
Q ss_pred -----------------CHHHHHHHhcccCCCCC----ccEEEEEecCCCcCchHHHHHHHhhc--cCC--CC-hHHHHH
Q 002040 794 -----------------HYEDYVHRVGRTGRAGR----KGCAITFISEEDAKYSPDLVKALELS--EQV--VP-DDLKAL 847 (976)
Q Consensus 794 -----------------s~~~y~Qr~GR~gR~g~----~g~~~~~~~~~d~~~~~~i~~~l~~~--~~~--vp-~~l~~l 847 (976)
++.+|+||+|||||.|. .|.+++|+ +|...+..|.+.+... ... ++ .+|..+
T Consensus 444 ~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~--~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 521 (1104)
T 4ddu_A 444 MFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKEL 521 (1104)
T ss_dssp HCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHTCCCEEEGGGCCHHHH
T ss_pred ccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEE--ecHHHHHHHHHHHhhhcccccccccccCHHHH
Confidence 77899999999999653 34555555 7788888888887632 111 11 234444
Q ss_pred HHHHHHHHhhhhhhccCCCCCCCCcccchhHHHHHHHHHHHHH
Q 002040 848 ADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQA 890 (976)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 890 (976)
...+-..... +.... ..+-...+-+++.....+...+.++.
T Consensus 522 ~~~i~~~r~~-~~~~~-~~~m~~~LvIaEkPs~Ak~ia~~Lg~ 562 (1104)
T 4ddu_A 522 VHEVEESRRR-SEREL-TDTSRSLLIIVESPTKAETLSRFLGR 562 (1104)
T ss_dssp HHHHHHHHHH-HHSCC-CCCCBCEEEEESCHHHHHHHHHHHTC
T ss_pred HHHHhHHHHH-hhhhh-hHhcCCeEEEEECHHHHHHHHHHhCC
Confidence 4333222111 11000 11223445666666666666665554
No 29
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.1e-42 Score=428.85 Aligned_cols=331 Identities=21% Similarity=0.277 Sum_probs=262.3
Q ss_pred ccccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEE
Q 002040 468 TWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLI 545 (976)
Q Consensus 468 ~~~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLI 545 (976)
+|.+++ |++.+...|..+||..|+|+|.++++.+++++++|++||||||||++|.+|++..+.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 477777 8999999999999999999999999999999999999999999999999999988763 468999
Q ss_pred EccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 546 MAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 546 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
++|+++||.|++..++.+. .+|+.+..++|+...... ...+++|+||||++|..++.... ..+..+++|||||
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~---~~l~~~~~vIiDE 146 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRA---SWIKAVSCLVVDE 146 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTC---SGGGGCCEEEETT
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcCh---hHHhhcCEEEEee
Confidence 9999999999999996543 468999999998765432 11368999999999988886632 3478899999999
Q ss_pred cccccccCCchHHHHHHHhc---CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEE------ecC
Q 002040 626 ADRMFDMGFEPQITRIVQNI---RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE------VRP 696 (976)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~---~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~------~~~ 696 (976)
||.+.++++...+..++..+ .++.|+|+||||+++ ...++. ++..++ +.....+.+ +...+. +..
T Consensus 147 ~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r~~~---l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 147 IHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWRPVP---LVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCCSSC---EEEEEECSSEEEEEE
T ss_pred eeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCCCcc---ceEEEeeCCeeeccC
Confidence 99999888888777776555 678999999999986 344444 444332 222222211 111111 111
Q ss_pred cc-------hHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC------------------------------CC
Q 002040 697 ES-------DRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH------------------------------GY 739 (976)
Q Consensus 697 ~~-------~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~------------------------------~~ 739 (976)
.. .....+...+ ...+++||||+++..++.++..|... ++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~---~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 297 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECV---AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRK 297 (702)
T ss_dssp TTEEEEEECCHHHHHHHHH---HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHT
T ss_pred cchhhhhhhhHHHHHHHHH---hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhc
Confidence 00 1334444443 24689999999999999999988753 24
Q ss_pred CceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eC---CCCCHHHHHHHhcccCCCC--C
Q 002040 740 PCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD---APNHYEDYVHRVGRTGRAG--R 810 (976)
Q Consensus 740 ~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d---~p~s~~~y~Qr~GR~gR~g--~ 810 (976)
.+..+||+|++.+|..+++.|.+|.++|||||+++++|||+|++.+||+ || .|.+..+|+||+|||||.| .
T Consensus 298 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~ 377 (702)
T 2p6r_A 298 GAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDE 377 (702)
T ss_dssp TCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCS
T ss_pred CeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCC
Confidence 6888999999999999999999999999999999999999999999998 76 7899999999999999998 4
Q ss_pred ccEEEEEecCCC
Q 002040 811 KGCAITFISEED 822 (976)
Q Consensus 811 ~g~~~~~~~~~d 822 (976)
.|.||+|++..+
T Consensus 378 ~G~~~~l~~~~~ 389 (702)
T 2p6r_A 378 RGEAIIIVGKRD 389 (702)
T ss_dssp CEEEEEECCGGG
T ss_pred CceEEEEecCcc
Confidence 799999998765
No 30
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=5.2e-41 Score=428.82 Aligned_cols=370 Identities=18% Similarity=0.211 Sum_probs=281.3
Q ss_pred CCCCHHHHHHH-HHcCCCCCcHHHHHHHHHHhc----CC--CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 472 TGLTSKIMETI-RKLNYEKPMPIQAQALPVIMS----GR--DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 472 ~~l~~~l~~~l-~~~~~~~p~~~Q~~~i~~il~----g~--d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
++++..+...+ ..++|. |||+|.++|+.++. ++ ++|++++||+|||++|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 34455555555 457876 79999999999986 65 8999999999999999999887654 367899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH---HHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
|||||++||.||+..|..++..+++.+..++|+.+.... +..+..+ ++|+||||+.|. . ...+.++++
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~----~~~~~~l~l 728 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S----DVKFKDLGL 728 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S----CCCCSSEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C----Cccccccce
Confidence 999999999999999999888888999998887765544 3445554 899999997652 1 146788999
Q ss_pred EEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchH
Q 002040 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (976)
Q Consensus 621 vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k 700 (976)
|||||||++ ......++..++...++|+||||+++....++...+.++..+. ........+...+.....
T Consensus 729 vIiDEaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~--~~~~~r~~i~~~~~~~~~--- 798 (1151)
T 2eyq_A 729 LIVDEEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA--TPPARRLAVKTFVREYDS--- 798 (1151)
T ss_dssp EEEESGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECC--CCCCBCBCEEEEEEECCH---
T ss_pred EEEechHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEe--cCCCCccccEEEEecCCH---
Confidence 999999983 4566777888888899999999998776655555444433222 122222234433333222
Q ss_pred HHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccC
Q 002040 701 FLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGL 778 (976)
Q Consensus 701 ~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~Gl 778 (976)
......++.....++++||||+++..++.++..|... ++.+..+||+|++.+|..++..|.+|.++|||||+++++||
T Consensus 799 ~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~Gi 878 (1151)
T 2eyq_A 799 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 878 (1151)
T ss_dssp HHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeee
Confidence 2222333444445789999999999999999999987 88999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeCC-CCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChHHHHHHHHHHHHHhh
Q 002040 779 DVKELELVINFDA-PNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDDLKALADSFMAKVNQ 857 (976)
Q Consensus 779 Di~~v~~VI~~d~-p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~l~~l~~~~~~~~~~ 857 (976)
|||++++||++++ ++++..|+|++||+||.|+.|+||+|+++.+.. .....+.+ ..
T Consensus 879 Dip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~~l-~~~~~~rl-------------------~~--- 935 (1151)
T 2eyq_A 879 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM-TTDAQKRL-------------------EA--- 935 (1151)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGS-CHHHHHHH-------------------HH---
T ss_pred cccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcccc-CHHHHHHH-------------------HH---
Confidence 9999999999998 578999999999999999999999998754321 11111111 11
Q ss_pred hhhhccCCCCCCCCcccchhHHHHHHHHHHHHHHHcCC
Q 002040 858 GLEQAHGTGYGGSGFKFNEEEDEKRKAAKKAQAKEYGF 895 (976)
Q Consensus 858 ~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~g~ 895 (976)
+.. ....|+||.++..++++|+++..++..|+|+
T Consensus 936 -i~~---~~~lg~gf~ia~~dl~irg~g~~lg~~q~g~ 969 (1151)
T 2eyq_A 936 -IAS---LEDLGAGFALATHDLEIRGAGELLGEEQSGS 969 (1151)
T ss_dssp -HTT---CCSBSHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred -HHH---hhccCCcchHHHHHhccCCCcccCCccccCC
Confidence 111 1123568888888888888888777777664
No 31
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.9e-41 Score=398.06 Aligned_cols=326 Identities=20% Similarity=0.264 Sum_probs=260.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.+|+ .|+|+|..++|.+++|+ |+.++||+|||++|++|++...+. |+.|+||+||++||.|++.++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4788 89999999999999998 999999999999999999755442 457999999999999999999999
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcCC---cccccCCceEEEecCccccc-cc------
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSGG---KITNLRRVTYLVMDEADRMF-DM------ 632 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~~---~~~~l~~~~~vVlDEah~~~-~~------ 632 (976)
+..+|+.+.+++||.+..... +..+++|+|+||++| +++|..+-. ....+..+.++||||||+|+ +.
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~--~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLi 253 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERR--VAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLI 253 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHH--HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEE
T ss_pred HhhcCCeEEEEeCCCCHHHHH--HhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcccee
Confidence 999999999999999865443 334699999999999 788876421 23457889999999999998 43
Q ss_pred ---------CCchHHHHHHHhcC---------CCCcEE-----------------EEeccCcHHHHHH-----HHHHcC-
Q 002040 633 ---------GFEPQITRIVQNIR---------PDRQTV-----------------LFSATFPRQVEIL-----ARKVLN- 671 (976)
Q Consensus 633 ---------~f~~~i~~il~~~~---------~~~q~i-----------------~~SAT~~~~~~~l-----~~~~l~- 671 (976)
+|...+..|+..++ ..+|++ +||||++..+..+ +..++.
T Consensus 254 iSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~ 333 (922)
T 1nkt_A 254 ISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSR 333 (922)
T ss_dssp EEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCB
T ss_pred ecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhc
Confidence 47788999999997 678888 8999987533222 222332
Q ss_pred CC-------eEEEeCC---c--------------------------ccccCCce--------------------------
Q 002040 672 KP-------VEIQVGG---R--------------------------SVVNKDIT-------------------------- 689 (976)
Q Consensus 672 ~~-------~~i~~~~---~--------------------------~~~~~~i~-------------------------- 689 (976)
+. ..+.+.. . ......|.
T Consensus 334 d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~ 413 (922)
T 1nkt_A 334 DKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELH 413 (922)
T ss_dssp TTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHH
T ss_pred ccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHH
Confidence 11 1111110 0 00000000
Q ss_pred ---------------------EEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCC
Q 002040 690 ---------------------QLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGA 747 (976)
Q Consensus 690 ---------------------q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~ 747 (976)
+.+.+.....|+..++..|..... +.++||||+|+..++.|+..|...|+++..|||.
T Consensus 414 ~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 414 EIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 012334556788888888876544 4589999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhccCCccEEEecCcccccCCCCCC--------------------------------------------
Q 002040 748 KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKEL-------------------------------------------- 783 (976)
Q Consensus 748 ~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v-------------------------------------------- 783 (976)
+.+.++..+.+.|+.| .|+|||++|+||+||+.+
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888888788888887 699999999999999975
Q ss_pred --------cEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcC
Q 002040 784 --------ELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAK 824 (976)
Q Consensus 784 --------~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~ 824 (976)
.+||+|+.|.+...|+|++||+||.|.+|.+++|++..|..
T Consensus 572 ~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 572 KEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp HHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred hHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 59999999999999999999999999999999999987753
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.3e-41 Score=394.05 Aligned_cols=321 Identities=22% Similarity=0.305 Sum_probs=250.7
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
.|+|+|.++++.++.+ ++|++++||+|||++++++++..+.. .++++||||||++|+.||+.++.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 5899999999999999 99999999999999999999888762 356899999999999999999999864344
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCC
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~ 648 (976)
..+..++|+........ +..+++|+|+||+.|...+.... ..+..+++|||||||++.+......+...+....+.
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~---~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~ 156 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGR---ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN 156 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTS---CCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSS
T ss_pred hheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCC---cchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCC
Confidence 58888888887665433 33458999999999998876532 467789999999999988665555566666666788
Q ss_pred CcEEEEeccCcHH---HHHHHHHHcCCCeEEEeCCccc----ccCCceEEEE----------------------------
Q 002040 649 RQTVLFSATFPRQ---VEILARKVLNKPVEIQVGGRSV----VNKDITQLVE---------------------------- 693 (976)
Q Consensus 649 ~q~i~~SAT~~~~---~~~l~~~~l~~~~~i~~~~~~~----~~~~i~q~~~---------------------------- 693 (976)
.++|+||||++.. +..+...+....+.+....... ........+.
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999743 3333333222211111000000 0000000000
Q ss_pred --------------------------------------------------------------------------------
Q 002040 694 -------------------------------------------------------------------------------- 693 (976)
Q Consensus 694 -------------------------------------------------------------------------------- 693 (976)
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence
Q ss_pred ---------------------ecCcchHHHHHHHHHHhhh---cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccC---
Q 002040 694 ---------------------VRPESDRFLRLLELLGEWY---EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHG--- 746 (976)
Q Consensus 694 ---------------------~~~~~~k~~~l~~~l~~~~---~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg--- 746 (976)
......|+..|..+|.... ..+++||||++...++.++..|...|+.+..+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~ 396 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQAS 396 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSC
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecccc
Confidence 0033456677777777653 5779999999999999999999999999999999
Q ss_pred -----CCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCC
Q 002040 747 -----AKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE 821 (976)
Q Consensus 747 -----~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~ 821 (976)
+|+..+|..+++.|++|.++|||||+++++|||+|++++||+|++||++..|+||+||+||.|+ |.+|+|+++.
T Consensus 397 ~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~ 475 (494)
T 1wp9_A 397 KENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKG 475 (494)
T ss_dssp C-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETT
T ss_pred ccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999999999999997 9999999876
Q ss_pred C
Q 002040 822 D 822 (976)
Q Consensus 822 d 822 (976)
+
T Consensus 476 t 476 (494)
T 1wp9_A 476 T 476 (494)
T ss_dssp S
T ss_pred C
Confidence 4
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.7e-42 Score=438.33 Aligned_cols=320 Identities=19% Similarity=0.296 Sum_probs=262.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.+||. | |+|.++|+.++.|+|+|++|+||||||+ |++|++..+.. .++++|||+||++||.|++..+..+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHHHHHHH
Confidence 48999 9 9999999999999999999999999998 88998888764 3678999999999999999999999
Q ss_pred HhhcCc----EEEEeeCCCChHHH---HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCch
Q 002040 564 AKVMGV----RCVPVYGGSGVAQQ---ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP 636 (976)
Q Consensus 564 ~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~ 636 (976)
+..+++ .+.+++||.+...+ ...+.. ++|+||||++|.+++.. |..+++|||||||+|++ |..
T Consensus 123 ~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-------L~~l~~lViDEah~~l~--~~~ 192 (1054)
T 1gku_B 123 AEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-------LGHFDFIFVDDVDAILK--ASK 192 (1054)
T ss_dssp HTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-------SCCCSEEEESCHHHHHT--STH
T ss_pred HhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-------hccCCEEEEeChhhhhh--ccc
Confidence 988888 89999999988764 444555 99999999999887632 66899999999999987 567
Q ss_pred HHHHHHHhc-----------CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHH
Q 002040 637 QITRIVQNI-----------RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (976)
Q Consensus 637 ~i~~il~~~-----------~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~ 705 (976)
.+..++..+ +...|+++||||+++. ..++..++..+..+.+.........+.+.+. ...+...|.
T Consensus 193 ~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~---~~~k~~~L~ 268 (1054)
T 1gku_B 193 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRNVEDVAV---NDESISTLS 268 (1054)
T ss_dssp HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCCEEEEEE---SCCCTTTTH
T ss_pred cHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCCceEEEe---chhHHHHHH
Confidence 777777665 3568899999999886 4344444444444444444445556666555 345556666
Q ss_pred HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEe----cCcccccCCCC
Q 002040 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIA----TSVAARGLDVK 781 (976)
Q Consensus 706 ~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVa----T~v~~~GlDi~ 781 (976)
.+|... ++++||||+++..|+.++..|... +.+..+||++. .+++.|++|.++|||| |+++++|||||
T Consensus 269 ~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip 340 (1054)
T 1gku_B 269 SILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLP 340 (1054)
T ss_dssp HHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCT
T ss_pred HHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccC
Confidence 666654 578999999999999999999988 99999999984 7889999999999999 99999999999
Q ss_pred CC-cEEEEeCCC--------------------------------------------------------------------
Q 002040 782 EL-ELVINFDAP-------------------------------------------------------------------- 792 (976)
Q Consensus 782 ~v-~~VI~~d~p-------------------------------------------------------------------- 792 (976)
+| ++||+|++|
T Consensus 341 ~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 420 (1054)
T 1gku_B 341 ERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGE 420 (1054)
T ss_dssp TTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTE
T ss_pred CcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecc
Confidence 95 999999999
Q ss_pred ---CCHHHHHHHhcccCCCCCcc--EEEEEecCCCcCchHHHHHHHhh
Q 002040 793 ---NHYEDYVHRVGRTGRAGRKG--CAITFISEEDAKYSPDLVKALEL 835 (976)
Q Consensus 793 ---~s~~~y~Qr~GR~gR~g~~g--~~~~~~~~~d~~~~~~i~~~l~~ 835 (976)
.+...|+||+|||||.|..| .+++|+...+...+..|.+.+..
T Consensus 421 ~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 421 VIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp EEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred eecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987765 48888888888888888888875
No 34
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-42 Score=421.12 Aligned_cols=318 Identities=18% Similarity=0.237 Sum_probs=244.5
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHhcC------CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 476 SKIMETIRKLNYEKPMPIQAQALPVIMSG------RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 476 ~~l~~~l~~~~~~~p~~~Q~~~i~~il~g------~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
..+...+..++| .||++|.++|+.|+.+ .++|++|+||||||++|++|++..+.. ++++|||+||
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPt 426 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPT 426 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSC
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCc
Confidence 344555678999 8999999999999875 599999999999999999999988753 5789999999
Q ss_pred HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH---HHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 550 RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 550 r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
++||.|++..+..++..+++.+.+++|+...... +..+..+ ++|+||||+.|.+. ..+.++++|||||
T Consensus 427 r~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~--------~~~~~l~lVVIDE 498 (780)
T 1gm5_A 427 SILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED--------VHFKNLGLVIIDE 498 (780)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC--------CCCSCCCEEEEES
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh--------hhccCCceEEecc
Confidence 9999999999999998889999999999887654 3445554 89999999877432 4678899999999
Q ss_pred cccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHH
Q 002040 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (976)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~ 705 (976)
||++.... ...+.......++|+||||+++....+ .++.......+.........+... .....+...++
T Consensus 499 aHr~g~~q-----r~~l~~~~~~~~vL~mSATp~p~tl~~--~~~g~~~~s~i~~~p~~r~~i~~~---~~~~~~~~~l~ 568 (780)
T 1gm5_A 499 QHRFGVKQ-----REALMNKGKMVDTLVMSATPIPRSMAL--AFYGDLDVTVIDEMPPGRKEVQTM---LVPMDRVNEVY 568 (780)
T ss_dssp CCCC----------CCCCSSSSCCCEEEEESSCCCHHHHH--HHTCCSSCEEECCCCSSCCCCEEC---CCCSSTHHHHH
T ss_pred cchhhHHH-----HHHHHHhCCCCCEEEEeCCCCHHHHHH--HHhCCcceeeeeccCCCCcceEEE---EeccchHHHHH
Confidence 99863221 122233345689999999987764333 333333222222211111223221 22233445555
Q ss_pred HHHHhhh-cCCcEEEEecCH--------HHHHHHHHHHHH---CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc
Q 002040 706 ELLGEWY-EKGKILIFVHSQ--------EKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV 773 (976)
Q Consensus 706 ~~l~~~~-~~~kvLIF~~s~--------~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v 773 (976)
..+.... .+++++|||++. ..+..++..|.. .++.+..+||+|++.+|..++..|++|.++|||||++
T Consensus 569 ~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~v 648 (780)
T 1gm5_A 569 EFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTV 648 (780)
T ss_dssp HHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSC
T ss_pred HHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCC
Confidence 6555443 456899999965 356788888877 4789999999999999999999999999999999999
Q ss_pred ccccCCCCCCcEEEEeCCCC-CHHHHHHHhcccCCCCCccEEEEEecC
Q 002040 774 AARGLDVKELELVINFDAPN-HYEDYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~-s~~~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
+++|||+|++++||++++|. +...|.|++||+||.|.+|.|++|+++
T Consensus 649 ie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 649 IEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp CCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCS
T ss_pred CCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECC
Confidence 99999999999999999996 688999999999999999999999874
No 35
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-40 Score=415.52 Aligned_cols=312 Identities=19% Similarity=0.259 Sum_probs=250.4
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.++|. |+|+|.++|+.++.|+++|+++|||||||++|.++++..+.. ++++||++||++|+.|++..|..+
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~ 152 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAE 152 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHH
Confidence 35665 999999999999999999999999999999999999887642 578999999999999999999987
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHH
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~ 643 (976)
+. .+..++|+.... .+++|+||||++|.+++.... ..+..+++|||||||+|.++++...+..++.
T Consensus 153 ~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~---~~l~~l~lVViDEaH~l~d~~rg~~~e~il~ 218 (1010)
T 2xgj_A 153 FG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGS---EVMREVAWVIFDEVHYMRDKERGVVWEETII 218 (1010)
T ss_dssp HS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTC---TTGGGEEEEEEETGGGGGCTTTHHHHHHHHH
T ss_pred hC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCc---chhhcCCEEEEechhhhcccchhHHHHHHHH
Confidence 64 577788887543 358999999999998887642 4578899999999999999999999999999
Q ss_pred hcCCCCcEEEEeccCcHHHH--HHHHHHcCCCeEEEeCCcccccCCceEEEEecC---------c---------------
Q 002040 644 NIRPDRQTVLFSATFPRQVE--ILARKVLNKPVEIQVGGRSVVNKDITQLVEVRP---------E--------------- 697 (976)
Q Consensus 644 ~~~~~~q~i~~SAT~~~~~~--~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~---------~--------------- 697 (976)
.+++..|+|+||||+|+... .+.......+..+...... +..+.+.+.... .
T Consensus 219 ~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (1010)
T 2xgj_A 219 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS 296 (1010)
T ss_dssp HSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC--SSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT
T ss_pred hcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEEEEecCCcceeeeeccccccchHHHHHHHHH
Confidence 99999999999999987543 2333334555444332211 112222222100 0
Q ss_pred -------------------------------chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCC------
Q 002040 698 -------------------------------SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP------ 740 (976)
Q Consensus 698 -------------------------------~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~------ 740 (976)
...+..++..+... ..+++||||+++..|+.++..|...++.
T Consensus 297 l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~ 375 (1010)
T 2xgj_A 297 ISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK-KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKE 375 (1010)
T ss_dssp CC------------------------------CHHHHHHHHHHHH-TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHH
T ss_pred HhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHH
Confidence 11122333333321 3458999999999999999998765543
Q ss_pred ---------------------------------ceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEE
Q 002040 741 ---------------------------------CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI 787 (976)
Q Consensus 741 ---------------------------------~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI 787 (976)
+..+||+|++.+|..++..|++|.++|||||+++++|||+|++++||
T Consensus 376 ~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI 455 (1010)
T 2xgj_A 376 ALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVF 455 (1010)
T ss_dssp HHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEE
T ss_pred HHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEE
Confidence 67899999999999999999999999999999999999999999999
Q ss_pred E----eCC----CCCHHHHHHHhcccCCCCC--ccEEEEEecCC
Q 002040 788 N----FDA----PNHYEDYVHRVGRTGRAGR--KGCAITFISEE 821 (976)
Q Consensus 788 ~----~d~----p~s~~~y~Qr~GR~gR~g~--~g~~~~~~~~~ 821 (976)
+ ||. |+++..|+||+|||||.|. .|.||+|+++.
T Consensus 456 ~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 456 TSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp SCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred eCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 9 999 9999999999999999996 59999999864
No 36
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.7e-41 Score=421.35 Aligned_cols=331 Identities=20% Similarity=0.277 Sum_probs=211.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.++..|+|+|.++|+.++.|+++|++++||+|||++|++|++.++...+ .+.++++|||+||++|+.||+..|..++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4677899999999999999999999999999999999999998876542 2336789999999999999999999999
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHH-HHHH
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQIT-RIVQ 643 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~-~il~ 643 (976)
...++.+..++|+.....+...+..+++|+|+||++|.+++... ....+..+++|||||||++.+.+....+. .++.
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~--~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~ 398 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLE 398 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS--SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC--ccccccCCCEEEEECccccCCCccHHHHHHHHHH
Confidence 88899999999999777666666667999999999999988653 22357789999999999988765322222 2222
Q ss_pred h----cCCCCcEEEEeccCcH-----------HHHHHHH------------------HHcCCCeEEEeCCcccccC----
Q 002040 644 N----IRPDRQTVLFSATFPR-----------QVEILAR------------------KVLNKPVEIQVGGRSVVNK---- 686 (976)
Q Consensus 644 ~----~~~~~q~i~~SAT~~~-----------~~~~l~~------------------~~l~~~~~i~~~~~~~~~~---- 686 (976)
. ..+..++|+||||++. .+..+.. .++..|.............
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~ 478 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHH
Confidence 2 1566899999999852 2222211 1222222111100000000
Q ss_pred --------------------CceEE--EE---------------------------------------------------
Q 002040 687 --------------------DITQL--VE--------------------------------------------------- 693 (976)
Q Consensus 687 --------------------~i~q~--~~--------------------------------------------------- 693 (976)
.+.+. ..
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i 558 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 00000 00
Q ss_pred -------------------------------------------------ecCcchHHHHHHHHHHhhh---cCCcEEEEe
Q 002040 694 -------------------------------------------------VRPESDRFLRLLELLGEWY---EKGKILIFV 721 (976)
Q Consensus 694 -------------------------------------------------~~~~~~k~~~l~~~l~~~~---~~~kvLIF~ 721 (976)
......|+..|..+|.... ...++||||
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~ 638 (936)
T 4a2w_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (936)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEE
T ss_pred hcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEe
Confidence 0002445666666776542 457999999
Q ss_pred cCHHHHHHHHHHHHHC------------CCCceeccCCCCHHHHHHHHHHhcc-CCccEEEecCcccccCCCCCCcEEEE
Q 002040 722 HSQEKCDALFRDLLKH------------GYPCLSLHGAKDQTDRESTISDFKS-NVCNLLIATSVAARGLDVKELELVIN 788 (976)
Q Consensus 722 ~s~~~~~~l~~~L~~~------------~~~~~~lhg~~~~~~R~~~~~~F~~-g~~~vLVaT~v~~~GlDi~~v~~VI~ 788 (976)
+++.+++.|+.+|... |..+..+||+|++.+|..++..|++ |.++|||||+++++|||||+|++||+
T Consensus 639 ~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 9999999999999986 5566677899999999999999998 99999999999999999999999999
Q ss_pred eCCCCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 789 FDAPNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 789 ~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
||+|+|+..|+||+|| ||. ..|.||+|++..+
T Consensus 719 yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t 750 (936)
T 4a2w_A 719 YEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTE 750 (936)
T ss_dssp ESCCSCSHHHHCC---------CCCEEEEESCHH
T ss_pred eCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCC
Confidence 9999999999999999 999 6899999998754
No 37
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5e-41 Score=415.27 Aligned_cols=327 Identities=21% Similarity=0.290 Sum_probs=228.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHH-HHHHHHHHhh
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQI-HSDIRKFAKV 566 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~-~~~~~~~~~~ 566 (976)
..|+|+|.++|+.++.|+++|++++||+|||++|++|++.++...+. .+.++++|||+||++|+.|| +..+..++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 36999999999999999999999999999999999999988765321 12346799999999999999 9999998765
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcC---CcccccCCceEEEecCcccccccCCchHHHH-HH
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG---GKITNLRRVTYLVMDEADRMFDMGFEPQITR-IV 642 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~---~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~-il 642 (976)
++.+..++|+.........+..+++|+|+||++|...+.... .....+..+++|||||||++...++...+.. ++
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 588999999987666656666789999999999998773321 1224678899999999998866544433333 22
Q ss_pred Hh----cC---------CCCcEEEEeccCcHH-----------HHHHHHHHcCCCeEEEeCC----cccccCCceEEEEe
Q 002040 643 QN----IR---------PDRQTVLFSATFPRQ-----------VEILARKVLNKPVEIQVGG----RSVVNKDITQLVEV 694 (976)
Q Consensus 643 ~~----~~---------~~~q~i~~SAT~~~~-----------~~~l~~~~l~~~~~i~~~~----~~~~~~~i~q~~~~ 694 (976)
.. .. +..++|+||||++.. +..+...+....+...... .............+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 11 678999999999862 2222222211011000000 00000000000000
Q ss_pred cC------------------------------------------------------------------------------
Q 002040 695 RP------------------------------------------------------------------------------ 696 (976)
Q Consensus 695 ~~------------------------------------------------------------------------------ 696 (976)
..
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------cchHHHHHHHHHHhhh---c-CCc
Q 002040 697 --------------------------------------------------------ESDRFLRLLELLGEWY---E-KGK 716 (976)
Q Consensus 697 --------------------------------------------------------~~~k~~~l~~~l~~~~---~-~~k 716 (976)
...|+..|+.+|.... . .++
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 1122223334444322 2 679
Q ss_pred EEEEecCHHHHHHHHHHHHHC------CCCceeccCC--------CCHHHHHHHHHHhccCCccEEEecCcccccCCCCC
Q 002040 717 ILIFVHSQEKCDALFRDLLKH------GYPCLSLHGA--------KDQTDRESTISDFKSNVCNLLIATSVAARGLDVKE 782 (976)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~------~~~~~~lhg~--------~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~ 782 (976)
+||||+++..++.|+..|... |+.+..+||+ |++.+|..++..|++|.++|||||+++++|||+|+
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred CcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecC
Q 002040 783 LELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 783 v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
+++||+||+|+|+..|+||+||+||.| .+++|+..
T Consensus 483 v~~VI~~d~p~s~~~~~Qr~GRArr~g---~~~~l~~~ 517 (699)
T 4gl2_A 483 CNIVIRYGLVTNEIAMVQARGRARADE---STYVLVAH 517 (699)
T ss_dssp CCCCEEESCCCCHHHHHHHHTTSCSSS---CEEEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHcCCCCCCC---ceEEEEEe
Confidence 999999999999999999999976654 44444443
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=4.7e-39 Score=404.97 Aligned_cols=308 Identities=19% Similarity=0.254 Sum_probs=242.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
++|. |+|+|.++|+.++.|+++|++||||||||++|+++++..+. .++++||++||++|+.|++..+..++
T Consensus 36 ~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 4554 89999999999999999999999999999999999887654 26789999999999999999998865
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHh
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN 644 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~ 644 (976)
. ++.+..++|+.... ..++|+|+||++|.+++.... ..+..+++|||||||++.+++|...+..++..
T Consensus 107 ~--~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~---~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~ 174 (997)
T 4a4z_A 107 D--DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGA---DLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIM 174 (997)
T ss_dssp ----CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTC---SGGGGEEEEEECCTTCCCTTCTTCCHHHHHHH
T ss_pred C--CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCc---hhhcCCCEEEEECcccccccchHHHHHHHHHh
Confidence 3 67888899987532 458999999999998886643 45778999999999999999999999999999
Q ss_pred cCCCCcEEEEeccCcHHHHHHHHHHc---CCCeEEE-eCCcccccCCceEEE----------------------------
Q 002040 645 IRPDRQTVLFSATFPRQVEILARKVL---NKPVEIQ-VGGRSVVNKDITQLV---------------------------- 692 (976)
Q Consensus 645 ~~~~~q~i~~SAT~~~~~~~l~~~~l---~~~~~i~-~~~~~~~~~~i~q~~---------------------------- 692 (976)
+++..|+|+||||+++... ++..+. ..++.+. ...... .+.+.+
T Consensus 175 l~~~v~iIlLSAT~~n~~e-f~~~l~~~~~~~~~vi~~~~r~~---pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTYE-FANWIGRTKQKNIYVISTPKRPV---PLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp SCTTCEEEEEECCCTTHHH-HHHHHHHHHTCCEEEEECSSCSS---CEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred cccCCCEEEEcCCCCChHH-HHHHHhcccCCceEEEecCCCCc---cceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 9999999999999987653 333322 1222211 111111 111111
Q ss_pred -----------------------------------------------------------------EecCcchHHHHHHHH
Q 002040 693 -----------------------------------------------------------------EVRPESDRFLRLLEL 707 (976)
Q Consensus 693 -----------------------------------------------------------------~~~~~~~k~~~l~~~ 707 (976)
.......++..++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 001122345556666
Q ss_pred HHhhhcCCcEEEEecCHHHHHHHHHHHHHCCC---------------------------------------CceeccCCC
Q 002040 708 LGEWYEKGKILIFVHSQEKCDALFRDLLKHGY---------------------------------------PCLSLHGAK 748 (976)
Q Consensus 708 l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~---------------------------------------~~~~lhg~~ 748 (976)
|... ..+++||||+++..|+.++..|...++ .+..+||+|
T Consensus 331 l~~~-~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl 409 (997)
T 4a4z_A 331 LRKR-ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGL 409 (997)
T ss_dssp HHHT-TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhC-CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCC
Confidence 6543 456999999999999999999977665 478999999
Q ss_pred CHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCC---------CHHHHHHHhcccCCCC--CccEEEEE
Q 002040 749 DQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPN---------HYEDYVHRVGRTGRAG--RKGCAITF 817 (976)
Q Consensus 749 ~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~---------s~~~y~Qr~GR~gR~g--~~g~~~~~ 817 (976)
++.+|..++..|.+|.++|||||+++++|||+|+ .+||+++.|. ++..|+|++|||||.| ..|.|+++
T Consensus 410 ~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 410 LPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp CHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred CHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999999999999 5555555544 9999999999999998 56778877
Q ss_pred ec
Q 002040 818 IS 819 (976)
Q Consensus 818 ~~ 819 (976)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 39
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=3.1e-40 Score=396.23 Aligned_cols=309 Identities=17% Similarity=0.182 Sum_probs=240.3
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
...|+|+|+.+++.++.++++|++|+||||||++|++|++..+.. .++++|||+||++||.|++..+.
T Consensus 169 ~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~PtreLa~Qi~~~l~----- 236 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRVVAAEMEEALR----- 236 (618)
T ss_dssp CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT-----
T ss_pred cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHHHHHHHHHHhc-----
Confidence 467889988899999999999999999999999999999988765 36789999999999999998775
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
+..+.. .+.... .....+..|.++|.+.|...+... ..+.++++|||||||+| +++|...+..++..+.
T Consensus 237 -~~~v~~-~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~ 305 (618)
T 2whx_A 237 -GLPIRY-QTPAVK----SDHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVE 305 (618)
T ss_dssp -TSCEEE-CCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC----SSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHH
T ss_pred -CCceeE-ecccce----eccCCCceEEEEChHHHHHHHhcc----ccccCCeEEEEECCCCC-CccHHHHHHHHHHHhc
Confidence 233332 121100 011124577788888887766543 35788999999999998 6778878888877764
Q ss_pred -CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHH
Q 002040 647 -PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQE 725 (976)
Q Consensus 647 -~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~ 725 (976)
++.|+|+||||++..+..++. .++..+.+... . ....+..++..|.. ..+++||||+++.
T Consensus 306 ~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~-~-------------~~~~~~~ll~~l~~--~~~~~LVF~~s~~ 366 (618)
T 2whx_A 306 MGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE-I-------------PERSWNTGFDWITD--YQGKTVWFVPSIK 366 (618)
T ss_dssp HTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC-C-------------CSSCCSSSCHHHHH--CCSCEEEECSSHH
T ss_pred ccCccEEEEECCCchhhhhhhc---cCCceeeeccc-C-------------CHHHHHHHHHHHHh--CCCCEEEEECChh
Confidence 789999999999876432221 12322222211 0 01111223333333 3679999999999
Q ss_pred HHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEE-------------------
Q 002040 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELV------------------- 786 (976)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~V------------------- 786 (976)
.|+.++..|...++.+..+||. +|..+++.|++|.++|||||+++++||||| +++|
T Consensus 367 ~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~ 441 (618)
T 2whx_A 367 AGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERV 441 (618)
T ss_dssp HHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCce
Confidence 9999999999999999999984 688899999999999999999999999997 8888
Q ss_pred -EEeCCCCCHHHHHHHhcccCCCCC-ccEEEEEec---CCCcCchHHHHHHHhhccCCCCh
Q 002040 787 -INFDAPNHYEDYVHRVGRTGRAGR-KGCAITFIS---EEDAKYSPDLVKALELSEQVVPD 842 (976)
Q Consensus 787 -I~~d~p~s~~~y~Qr~GR~gR~g~-~g~~~~~~~---~~d~~~~~~i~~~l~~~~~~vp~ 842 (976)
|+|++|.+..+|+||+||+||.|. .|.||+|++ +.+...+..|...+......+|.
T Consensus 442 ~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~ 502 (618)
T 2whx_A 442 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 502 (618)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred EEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCc
Confidence 778889999999999999999965 899999998 78888888998888776666654
No 40
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.5e-37 Score=332.22 Aligned_cols=238 Identities=47% Similarity=0.838 Sum_probs=219.9
Q ss_pred CCHHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 441 MTPEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 441 ~~~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
++.+++..++..+.+.+.|..+|.|+.+|.++++++.+...|..+||..|+|+|.++|+.++.|+++|+++|||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchh
Q 002040 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGR 600 (976)
Q Consensus 521 ~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~ 600 (976)
|++|++.++...+......++++|||+||++||.|++..+..++...++.+.+++||.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987655555678899999999999999999999999999999999999999999888888899999999999
Q ss_pred HHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCC
Q 002040 601 MIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (976)
Q Consensus 601 L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~ 680 (976)
|.+++.... ..+.++.+|||||||+|++++|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+.++.
T Consensus 163 l~~~l~~~~---~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 163 LIDFLECGK---TNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp HHHHHHHTS---CCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred HHHHHHcCC---CCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 999987643 46788999999999999999999999999999999999999999999999999999999999988764
Q ss_pred c
Q 002040 681 R 681 (976)
Q Consensus 681 ~ 681 (976)
.
T Consensus 240 ~ 240 (242)
T 3fe2_A 240 L 240 (242)
T ss_dssp -
T ss_pred C
Confidence 3
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-37 Score=406.56 Aligned_cols=341 Identities=17% Similarity=0.208 Sum_probs=257.7
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~-g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~L 552 (976)
|.....+.|...+|..++|+|.++++.++. +.+++++||||||||++|.+||+.++... .+.++|||+||++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 445666777778899999999999999985 56899999999999999999999998764 35689999999999
Q ss_pred HHHHHHHHHH-HHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc
Q 002040 553 VQQIHSDIRK-FAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 553 a~Q~~~~~~~-~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
|.|++..|.. |...+|+.|+.++|+...... ...+++|+||||++|..++.. +.....++++++|||||+|.|.+
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~-~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRR-WKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTT-TTTCHHHHSCSEEEECCGGGGGS
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhC-cccccccceeeEEEeechhhcCC
Confidence 9999999976 556689999999998654332 223589999999998665543 32334578999999999998876
Q ss_pred cCCchHHHHHH-------HhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcch---HH
Q 002040 632 MGFEPQITRIV-------QNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD---RF 701 (976)
Q Consensus 632 ~~f~~~i~~il-------~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~---k~ 701 (976)
. .+..+..++ ..+.+..|+|+||||+++. ..++..+...+..+........+..+...+....... ++
T Consensus 1061 ~-rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~ 1138 (1724)
T 4f92_B 1061 E-NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRL 1138 (1724)
T ss_dssp T-THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHH
T ss_pred C-CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhh
Confidence 3 455544443 3456789999999999864 4455554443322222223333333444433322221 11
Q ss_pred ----HHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC----------------------------------CCCcee
Q 002040 702 ----LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----------------------------------GYPCLS 743 (976)
Q Consensus 702 ----~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~----------------------------------~~~~~~ 743 (976)
..+...+......+++||||+++..|..++..|... ...++.
T Consensus 1139 ~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~ 1218 (1724)
T 4f92_B 1139 LSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGY 1218 (1724)
T ss_dssp HTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEE
T ss_pred hhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEE
Confidence 223445555666789999999999999888776431 235788
Q ss_pred ccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eC------CCCCHHHHHHHhcccCCCCC--c
Q 002040 744 LHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FD------APNHYEDYVHRVGRTGRAGR--K 811 (976)
Q Consensus 744 lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d------~p~s~~~y~Qr~GR~gR~g~--~ 811 (976)
+||+|++.+|..+...|.+|.++|||||+++++|||+|...+||. |+ .|.++.+|+||+|||||.|. .
T Consensus 1219 hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~ 1298 (1724)
T 4f92_B 1219 LHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDE 1298 (1724)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSC
T ss_pred ECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCc
Confidence 999999999999999999999999999999999999999998883 33 36789999999999999986 6
Q ss_pred cEEEEEecCCCcCch
Q 002040 812 GCAITFISEEDAKYS 826 (976)
Q Consensus 812 g~~~~~~~~~d~~~~ 826 (976)
|.|++|+.+.+..++
T Consensus 1299 G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1299 GRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEEEEEEEGGGHHHH
T ss_pred eEEEEEecchHHHHH
Confidence 999999887654443
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.6e-39 Score=392.72 Aligned_cols=338 Identities=19% Similarity=0.259 Sum_probs=254.6
Q ss_pred CCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhc-CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCC
Q 002040 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMS-GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGP 541 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~-g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~ 541 (976)
+.++..|..+++++.+.+.+...+ ..|+++|.++|+.++. +++++++|+||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 456788999999999999999888 7899999999998875 4679999999999999 45544222111 112367
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEE
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYL 621 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~v 621 (976)
.++|++|+++||.|++..+... +++.+...+|+...... ....+++|+|+|||+|...+... ..+..+++|
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~---~~~~v~~~vG~~i~~~~--~~~~~~~I~v~T~G~l~r~l~~~----~~l~~~~~l 212 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEE---MDVKLGEEVGYSIRFEN--KTSNKTILKYMTDGMLLREAMED----HDLSRYSCI 212 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH---TTCCBTTTEEEEETTEE--ECCTTCSEEEEEHHHHHHHHHHS----TTCTTEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHH---hCCchhheecceecccc--ccCCCCCEEEECHHHHHHHHhhC----ccccCCCEE
Confidence 8999999999999998766543 34443333332211100 11235799999999999887653 458899999
Q ss_pred EecCcc-cccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchH
Q 002040 622 VMDEAD-RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDR 700 (976)
Q Consensus 622 VlDEah-~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k 700 (976)
|||||| ++++..+...+...+....++.|+|+||||++.. .+ ..++..+..+.+.+... .+.+.+.......+
T Consensus 213 IlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~~---pv~~~~~~~~~~~~ 286 (773)
T 2xau_A 213 ILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRTY---PVELYYTPEFQRDY 286 (773)
T ss_dssp EECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCCC---CEEEECCSSCCSCH
T ss_pred EecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH--HH-HHHhcCCCcccccCccc---ceEEEEecCCchhH
Confidence 999999 4776554444444444556789999999999753 33 44556555555554433 34444443444444
Q ss_pred HHHHHHHHHhh---hcCCcEEEEecCHHHHHHHHHHHHH-----------CCCCceeccCCCCHHHHHHHHHHhc-----
Q 002040 701 FLRLLELLGEW---YEKGKILIFVHSQEKCDALFRDLLK-----------HGYPCLSLHGAKDQTDRESTISDFK----- 761 (976)
Q Consensus 701 ~~~l~~~l~~~---~~~~kvLIF~~s~~~~~~l~~~L~~-----------~~~~~~~lhg~~~~~~R~~~~~~F~----- 761 (976)
...++..+... ...+++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|.
T Consensus 287 ~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 287 LDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 44444433332 2478999999999999999999975 5788999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCCcEEEEeCC------------------CCCHHHHHHHhcccCCCCCccEEEEEecCCC
Q 002040 762 SNVCNLLIATSVAARGLDVKELELVINFDA------------------PNHYEDYVHRVGRTGRAGRKGCAITFISEED 822 (976)
Q Consensus 762 ~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~------------------p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d 822 (976)
+|.++|||||+++++|||||++.+||++++ |.+...|+||+|||||. .+|.||+|+++.+
T Consensus 367 ~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~ 444 (773)
T 2xau_A 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEA 444 (773)
T ss_dssp SCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHH
T ss_pred CCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHH
Confidence 999999999999999999999999999887 89999999999999999 7999999997643
No 43
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.8e-39 Score=375.74 Aligned_cols=309 Identities=17% Similarity=0.162 Sum_probs=225.2
Q ss_pred CCCCCcHHHHHHHHHHhcCCCE-EEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 486 NYEKPMPIQAQALPVIMSGRDC-IGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 486 ~~~~p~~~Q~~~i~~il~g~d~-i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
|+.+|+|+|. +||.++.++++ |++|+||||||++|++|++.++.. .++++|||+||++||.|++..+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~--- 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALR--- 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT---
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhc---
Confidence 6788999985 79999999887 888999999999999999987664 35789999999999999998774
Q ss_pred hhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHH-
Q 002040 565 KVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ- 643 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~- 643 (976)
|+.+....+.... ....+..|.|+|++.|...+... ..+.++++|||||||++ +.++...+..+..
T Consensus 70 ---g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~----~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~ 136 (451)
T 2jlq_A 70 ---GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS----TRVPNYNLIVMDEAHFT-DPCSVAARGYISTR 136 (451)
T ss_dssp ---TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC----SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHH
T ss_pred ---Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc----ccccCCCEEEEeCCccC-CcchHHHHHHHHHh
Confidence 3333322221111 11234679999999998877643 45788999999999976 3333333333322
Q ss_pred hcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecC
Q 002040 644 NIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHS 723 (976)
Q Consensus 644 ~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s 723 (976)
...++.|+|+||||+|..+.. .+..++..+.+. ...+.. .+..+...+.. ..+++||||++
T Consensus 137 ~~~~~~~~i~~SAT~~~~~~~---~~~~~~~~~~~~-~~~p~~-------------~~~~~~~~l~~--~~~~~lVF~~s 197 (451)
T 2jlq_A 137 VEMGEAAAIFMTATPPGSTDP---FPQSNSPIEDIE-REIPER-------------SWNTGFDWITD--YQGKTVWFVPS 197 (451)
T ss_dssp HHTTSCEEEEECSSCTTCCCS---SCCCSSCEEEEE-CCCCSS-------------CCSSSCHHHHH--CCSCEEEECSS
T ss_pred hcCCCceEEEEccCCCccchh---hhcCCCceEecC-ccCCch-------------hhHHHHHHHHh--CCCCEEEEcCC
Confidence 345689999999999875322 122333333322 111100 00111223333 36799999999
Q ss_pred HHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeC-------------
Q 002040 724 QEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFD------------- 790 (976)
Q Consensus 724 ~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d------------- 790 (976)
+..++.++..|...|+.+..+||.+. ..++..|++|.++|||||+++++|||||+ ++||+|+
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~ 272 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPE 272 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSC
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccc
Confidence 99999999999999999999999765 57899999999999999999999999999 9999999
Q ss_pred -------CCCCHHHHHHHhcccCCCCC-ccEEEEEecCCCc---CchHHHHHHHhhccCCCCh
Q 002040 791 -------APNHYEDYVHRVGRTGRAGR-KGCAITFISEEDA---KYSPDLVKALELSEQVVPD 842 (976)
Q Consensus 791 -------~p~s~~~y~Qr~GR~gR~g~-~g~~~~~~~~~d~---~~~~~i~~~l~~~~~~vp~ 842 (976)
.|.+...|+||+|||||.|. .|.|++|+...+. .....+...+...+..+|.
T Consensus 273 ~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 335 (451)
T 2jlq_A 273 RVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPE 335 (451)
T ss_dssp EEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTT
T ss_pred eeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChh
Confidence 99999999999999999998 8999888754322 2222223334445555554
No 44
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=6.7e-39 Score=381.30 Aligned_cols=311 Identities=17% Similarity=0.132 Sum_probs=236.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
..|+|+|.++++.++.++++|++++||+|||++|+++++..+... ++++||||||++|+.||+..|.++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 479999999999999999999999999999999999998877542 3489999999999999999999886656
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~ 647 (976)
++.+..++|+.....+ +..+++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~------~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~ 251 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ------PKEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS------CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTT
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc------hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhccc
Confidence 6788889998766554 345689999999976432 124567899999999999764 567778888888
Q ss_pred CCcEEEEeccCcHHHHHH-HHHHcCCCeEEEeCCcc------cccCCceEEEEecC---------------------cch
Q 002040 648 DRQTVLFSATFPRQVEIL-ARKVLNKPVEIQVGGRS------VVNKDITQLVEVRP---------------------ESD 699 (976)
Q Consensus 648 ~~q~i~~SAT~~~~~~~l-~~~~l~~~~~i~~~~~~------~~~~~i~q~~~~~~---------------------~~~ 699 (976)
..++|+||||++.....+ ....+..+..+.+.... .....+.......+ ...
T Consensus 252 ~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 252 CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 899999999997654221 11112223222221110 11111111111111 112
Q ss_pred HHHHHHHHHHhhhc-CC-cEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEec-Ccccc
Q 002040 700 RFLRLLELLGEWYE-KG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT-SVAAR 776 (976)
Q Consensus 700 k~~~l~~~l~~~~~-~~-kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT-~v~~~ 776 (976)
+...+..++..... ++ ++||||+ ...+..|+..|...+..+..+||+|++.+|..++..|.+|.++||||| +++++
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~ 410 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST 410 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc
Confidence 23334455544432 33 4555555 899999999999988899999999999999999999999999999999 99999
Q ss_pred cCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 002040 777 GLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 777 GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
|||+|++++||++++|+++..|+|++||+||.|+.|.++++++
T Consensus 411 GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 411 GISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999998774555544
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=5.2e-37 Score=402.29 Aligned_cols=339 Identities=24% Similarity=0.322 Sum_probs=254.4
Q ss_pred CCCCCcHHHHHHHHHHh-cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCC---CCCCCCeEEEEccCHHHHHHHHHHHH
Q 002040 486 NYEKPMPIQAQALPVIM-SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV---AAGDGPVGLIMAPTRELVQQIHSDIR 561 (976)
Q Consensus 486 ~~~~p~~~Q~~~i~~il-~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~---~~~~~~~vLIl~Ptr~La~Q~~~~~~ 561 (976)
||..|+++|.+++|.++ +++|+|++||||||||++|.++|+..+...... ....+.++|||+|+++||.|++..|.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999987 578999999999999999999999998764321 12357789999999999999999999
Q ss_pred HHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHH
Q 002040 562 KFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRI 641 (976)
Q Consensus 562 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~i 641 (976)
+.+..+|+.|..++|+...... ...+++|+||||+++- .+.+.+.....+..+++|||||+|.+.+ ..+..+..+
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld-~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~ 230 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWD-IITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEAL 230 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHH-HHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHH-HHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHH
Confidence 9999999999999998765332 1245899999999984 4443332234578899999999996654 555555544
Q ss_pred H-------HhcCCCCcEEEEeccCcHHHHHHHHHHcCCC-eEEEeCCcccccCCceEEEEecCcch---HHH----HHHH
Q 002040 642 V-------QNIRPDRQTVLFSATFPRQVEILARKVLNKP-VEIQVGGRSVVNKDITQLVEVRPESD---RFL----RLLE 706 (976)
Q Consensus 642 l-------~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~-~~i~~~~~~~~~~~i~q~~~~~~~~~---k~~----~l~~ 706 (976)
+ ..+++..|+|+||||+|+. ..++..+...+ ..+.+......+..+.+.+....... .+. .+..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 3 3457889999999999864 44554433322 11122222333334444443222221 122 2233
Q ss_pred HHHhhhcCCcEEEEecCHHHHHHHHHHHHHC-------------------------------------CCCceeccCCCC
Q 002040 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKH-------------------------------------GYPCLSLHGAKD 749 (976)
Q Consensus 707 ~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~ 749 (976)
.+......+++||||+++..|+.++..|... ...++.+||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 3444445679999999999998888877542 234788999999
Q ss_pred HHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE----eCC------CCCHHHHHHHhcccCCCCC--ccEEEEE
Q 002040 750 QTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN----FDA------PNHYEDYVHRVGRTGRAGR--KGCAITF 817 (976)
Q Consensus 750 ~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~----~d~------p~s~~~y~Qr~GR~gR~g~--~g~~~~~ 817 (976)
+.+|..+...|++|.++|||||++++.|||+|...+||. |++ |.++.+|+||+|||||.|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999985 554 5689999999999999874 6999999
Q ss_pred ecCCCcCchHHHH
Q 002040 818 ISEEDAKYSPDLV 830 (976)
Q Consensus 818 ~~~~d~~~~~~i~ 830 (976)
++..+..+...++
T Consensus 470 ~~~~~~~~~~~ll 482 (1724)
T 4f92_B 470 TSHGELQYYLSLL 482 (1724)
T ss_dssp EESTTCCHHHHHT
T ss_pred ecchhHHHHHHHH
Confidence 8887766555444
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.1e-38 Score=364.57 Aligned_cols=291 Identities=20% Similarity=0.223 Sum_probs=204.2
Q ss_pred HHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCC
Q 002040 500 VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (976)
Q Consensus 500 ~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 579 (976)
++++|+++|++|+||||||++|++|++..+.. .++++|||+||++||.|++..+..+ + +....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAF- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCC-
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccc-
Confidence 35789999999999999999999999988765 2678999999999999999887642 2 22211111
Q ss_pred hHHHHHHHhcCCeEEEeCchhHHHHHHhc-----CCcccccCCceEEEecCcccccccCCchHHHHHHHhc-CCCCcEEE
Q 002040 580 VAQQISELKRGTEIVVCTPGRMIDILCTS-----GGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI-RPDRQTVL 653 (976)
Q Consensus 580 ~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~-----~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~-~~~~q~i~ 653 (976)
-+|+||+++++++... ......+.++++|||||||++ +.+|...+..+...+ ++..|+|+
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~ 135 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATIL 135 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEE
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEE
Confidence 0366666554322111 011134788999999999997 333333333332222 46799999
Q ss_pred EeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHH
Q 002040 654 FSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRD 733 (976)
Q Consensus 654 ~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~ 733 (976)
||||+++.+..++.. ..++. ......+. .....++..|.. ..+++||||+++..++.++..
T Consensus 136 ~SAT~~~~~~~~~~~--~~~~~--------------~~~~~~~~-~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~ 196 (440)
T 1yks_A 136 MTATPPGTSDEFPHS--NGEIE--------------DVQTDIPS-EPWNTGHDWILA--DKRPTAWFLPSIRAANVMAAS 196 (440)
T ss_dssp ECSSCTTCCCSSCCC--SSCEE--------------EEECCCCS-SCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHH
T ss_pred EeCCCCchhhhhhhc--CCCee--------------EeeeccCh-HHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHH
Confidence 999998764322111 11111 11011111 111112233333 267999999999999999999
Q ss_pred HHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE-------------------eCCCCC
Q 002040 734 LLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN-------------------FDAPNH 794 (976)
Q Consensus 734 L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~-------------------~d~p~s 794 (976)
|...++.+..+|| .+|..++..|++|.++|||||+++++||||| +++||+ |+.|.+
T Consensus 197 L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~ 271 (440)
T 1yks_A 197 LRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRIS 271 (440)
T ss_dssp HHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccC
Confidence 9999999999999 4688999999999999999999999999999 999986 899999
Q ss_pred HHHHHHHhcccCCC-CCccEEEEEe---cCCCcCchHHHHHHHhhccCCCCh
Q 002040 795 YEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALELSEQVVPD 842 (976)
Q Consensus 795 ~~~y~Qr~GR~gR~-g~~g~~~~~~---~~~d~~~~~~i~~~l~~~~~~vp~ 842 (976)
..+|+||+||+||. |.+|.|++|+ ++.+...+..+...+......+|.
T Consensus 272 ~~~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 323 (440)
T 1yks_A 272 ASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRG 323 (440)
T ss_dssp HHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGG
T ss_pred HHHHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccc
Confidence 99999999999997 6899999997 677888888888887777666654
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2e-37 Score=364.91 Aligned_cols=293 Identities=22% Similarity=0.233 Sum_probs=222.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
..|+|+|.++++.++.+.++|++++||+|||++|++++... +.++||||||++|+.||+..|..|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 36999999999999999999999999999999999988754 457999999999999999988873
Q ss_pred CcE-EEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 568 ~~~-~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
++. +..++|+... ..+|+|+||+.|...+.. ....+++|||||||++.+.+|.. ++..+
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~------~~~~~~liIvDEaH~~~~~~~~~----~~~~~- 216 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAESYVQ----IAQMS- 216 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH------HTTTCSEEEEETGGGTTSTTTHH----HHHTC-
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH------hcCCCCEEEEECCcCCCChHHHH----HHHhc-
Confidence 778 8777777642 479999999998766532 12458999999999998776643 44444
Q ss_pred CCCcEEEEeccCcHH-------------------HHHHHHHHcCCCeE--EEeCCccc----------------------
Q 002040 647 PDRQTVLFSATFPRQ-------------------VEILARKVLNKPVE--IQVGGRSV---------------------- 683 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~-------------------~~~l~~~~l~~~~~--i~~~~~~~---------------------- 683 (976)
+..++|+||||++.. +..+...++..+.. +.+.....
T Consensus 217 ~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (472)
T 2fwr_A 217 IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGIT 296 (472)
T ss_dssp CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCT
T ss_pred CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 567899999999731 12221122222211 11100000
Q ss_pred --ccCCceEEE---------------------EecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCC
Q 002040 684 --VNKDITQLV---------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (976)
Q Consensus 684 --~~~~i~q~~---------------------~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~ 740 (976)
....+.+.+ .......|+..|..+|.. ..++++||||++...++.++..| .
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~k~lvF~~~~~~~~~l~~~l-----~ 370 (472)
T 2fwr_A 297 LRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER-HRKDKIIIFTRHNELVYRISKVF-----L 370 (472)
T ss_dssp TTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH-TSSSCBCCBCSCHHHHHHHHHHT-----T
T ss_pred ccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh-CCCCcEEEEECCHHHHHHHHHHh-----C
Confidence 000000000 001234566777777766 45789999999999999999987 3
Q ss_pred ceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCc-c--EEEEE
Q 002040 741 CLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK-G--CAITF 817 (976)
Q Consensus 741 ~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~-g--~~~~~ 817 (976)
+..+||+++..+|..++..|++|.++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+. + .+|.|
T Consensus 371 ~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~l 450 (472)
T 2fwr_A 371 IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYEL 450 (472)
T ss_dssp CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEE
T ss_pred cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999854 3 44556
Q ss_pred ecCC
Q 002040 818 ISEE 821 (976)
Q Consensus 818 ~~~~ 821 (976)
++..
T Consensus 451 v~~~ 454 (472)
T 2fwr_A 451 ISRG 454 (472)
T ss_dssp EECS
T ss_pred EeCC
Confidence 6643
No 48
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=1.8e-37 Score=374.46 Aligned_cols=310 Identities=18% Similarity=0.212 Sum_probs=219.3
Q ss_pred HHcCCC-----CCcHHHH-----HHHHHHh------cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 483 RKLNYE-----KPMPIQA-----QALPVIM------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 483 ~~~~~~-----~p~~~Q~-----~~i~~il------~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
..+||. .|+|+|. ++||.++ .++++|++|+||||||++|++|++..+.. .++++|||
T Consensus 204 ~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lil 276 (673)
T 2wv9_A 204 YGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVL 276 (673)
T ss_dssp EEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEE
T ss_pred eeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEE
Confidence 345555 8999999 9999988 89999999999999999999999988765 35789999
Q ss_pred ccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 547 APTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+||++||.|++..+..+ ++. ...+.... ....+.-+.+++.+.+...+... ..+.++++||||||
T Consensus 277 aPTr~La~Q~~~~l~~~----~i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~----~~l~~l~lvViDEa 341 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGL----PVR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP----LRVPNYNLFVMDEA 341 (673)
T ss_dssp ESSHHHHHHHHHHTTTS----CCE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS----SCCCCCSEEEEEST
T ss_pred ccHHHHHHHHHHHHhcC----Cee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc----cccccceEEEEeCC
Confidence 99999999999887643 322 11111000 00112234445555554444321 35788999999999
Q ss_pred ccccccCCchHHHHHHHhc-CCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHH
Q 002040 627 DRMFDMGFEPQITRIVQNI-RPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLL 705 (976)
Q Consensus 627 h~~~~~~f~~~i~~il~~~-~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~ 705 (976)
|++ +..+...+..+...+ +...|+|+||||+++.+..+... ..++ .......+. ..+..++
T Consensus 342 H~~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i--------------~~v~~~~~~-~~~~~~l 403 (673)
T 2wv9_A 342 HFT-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPV--------------HDVSSEIPD-RAWSSGF 403 (673)
T ss_dssp TCC-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCE--------------EEEECCCCS-SCCSSCC
T ss_pred ccc-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCce--------------EEEeeecCH-HHHHHHH
Confidence 987 222222333333333 36789999999998653221110 1111 111000111 1111222
Q ss_pred HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE
Q 002040 706 ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL 785 (976)
Q Consensus 706 ~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~ 785 (976)
..|.. ..+++||||+++..++.++..|...++.+..+||. +|..++..|++|.++|||||+++++||||| +.+
T Consensus 404 ~~l~~--~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~ 476 (673)
T 2wv9_A 404 EWITD--YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASR 476 (673)
T ss_dssp HHHHS--CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSE
T ss_pred HHHHh--CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcE
Confidence 33333 46799999999999999999999999999999993 789999999999999999999999999999 999
Q ss_pred EEE--------------------eCCCCCHHHHHHHhcccCCC-CCccEEEEEe---cCCCcCchHHHHHHHhhccCC
Q 002040 786 VIN--------------------FDAPNHYEDYVHRVGRTGRA-GRKGCAITFI---SEEDAKYSPDLVKALELSEQV 839 (976)
Q Consensus 786 VI~--------------------~d~p~s~~~y~Qr~GR~gR~-g~~g~~~~~~---~~~d~~~~~~i~~~l~~~~~~ 839 (976)
||+ |++|.++++|+||+||+||. |+.|.||+|+ ++.+..++..+...+.+....
T Consensus 477 VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~ 554 (673)
T 2wv9_A 477 VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIH 554 (673)
T ss_dssp EEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSC
T ss_pred EEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhcc
Confidence 998 67899999999999999999 7899999996 567777777777665444333
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7.5e-37 Score=362.95 Aligned_cols=288 Identities=22% Similarity=0.238 Sum_probs=219.7
Q ss_pred CcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCc
Q 002040 490 PMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGV 569 (976)
Q Consensus 490 p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~ 569 (976)
++++|..+++.+..++++|++|+||||||++|.+|++. .+.++||++||++||.|++..+.. .++.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~---~~g~ 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSK---AHGI 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHH---HHSC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHH---HhCC
Confidence 44566666667778899999999999999999998875 255899999999999999886654 4567
Q ss_pred EEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCC
Q 002040 570 RCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDR 649 (976)
Q Consensus 570 ~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~ 649 (976)
.+...+|+.. +..+++|+|+||++|+ .. ....+.++++||||||| +++++|...+..++..++...
T Consensus 284 ~vg~~vG~~~-------~~~~~~IlV~TPGrLl---~~---~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~ 349 (666)
T 3o8b_A 284 DPNIRTGVRT-------ITTGAPVTYSTYGKFL---AD---GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAG 349 (666)
T ss_dssp CCEEECSSCE-------ECCCCSEEEEEHHHHH---HT---TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTT
T ss_pred CeeEEECcEe-------ccCCCCEEEECcHHHH---hC---CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcC
Confidence 7777888864 3567899999999973 22 22567789999999996 567788888999999888777
Q ss_pred c--EEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHH
Q 002040 650 Q--TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKC 727 (976)
Q Consensus 650 q--~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~ 727 (976)
| +|+||||++..+. ...+....+... .... +........ + .....+++||||+++..+
T Consensus 350 ~~llil~SAT~~~~i~------~~~p~i~~v~~~---~~~~---i~~~~~~~~-------l-~~~~~~~vLVFv~Tr~~a 409 (666)
T 3o8b_A 350 ARLVVLATATPPGSVT------VPHPNIEEVALS---NTGE---IPFYGKAIP-------I-EAIRGGRHLIFCHSKKKC 409 (666)
T ss_dssp CSEEEEEESSCTTCCC------CCCTTEEEEECB---SCSS---EEETTEEEC-------G-GGSSSSEEEEECSCHHHH
T ss_pred CceEEEECCCCCcccc------cCCcceEEEeec---ccch---hHHHHhhhh-------h-hhccCCcEEEEeCCHHHH
Confidence 7 6788999987311 111111111000 0000 011100000 1 122578999999999999
Q ss_pred HHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEE----------EeC-------
Q 002040 728 DALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVI----------NFD------- 790 (976)
Q Consensus 728 ~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI----------~~d------- 790 (976)
+.++..|...++.+..+||+|++.+ |.++..+|||||+++++||||+ +++|| |||
T Consensus 410 e~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 410 DELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 9999999999999999999999874 5667779999999999999997 99988 677
Q ss_pred ----CCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCc--h--HHHHHHHhh
Q 002040 791 ----APNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY--S--PDLVKALEL 835 (976)
Q Consensus 791 ----~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~--~--~~i~~~l~~ 835 (976)
.|.+.+.|+||+||+|| |.+|. |+|+++.+... + ..|.+.+..
T Consensus 482 ~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~~ 532 (666)
T 3o8b_A 482 ETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPSGMFDSSVLCECYDA 532 (666)
T ss_dssp EEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHHH
T ss_pred ccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhcccccHHHHHHHhcC
Confidence 89999999999999999 89999 99999877665 4 666666543
No 50
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5.8e-37 Score=357.90 Aligned_cols=283 Identities=17% Similarity=0.215 Sum_probs=203.5
Q ss_pred HHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEee
Q 002040 496 QALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVY 575 (976)
Q Consensus 496 ~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~ 575 (976)
+...++..++++|++|+||||||++|++|++..+.. .++++|||+||++||.|++..+. |+.+....
T Consensus 13 ~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~ 79 (459)
T 2z83_A 13 GSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQT 79 (459)
T ss_dssp --CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC
T ss_pred HHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhc------CceEeEEe
Confidence 334456678999999999999999999999988764 25789999999999999998876 33333222
Q ss_pred CCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccc-----ccccCCchHHHHHHHhcCCCCc
Q 002040 576 GGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADR-----MFDMGFEPQITRIVQNIRPDRQ 650 (976)
Q Consensus 576 gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~-----~~~~~f~~~i~~il~~~~~~~q 650 (976)
+.... .-..+..|.++|.+.+...+... ..+.++++|||||||+ ++.++|...+. ..+..|
T Consensus 80 ~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~----~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~ 145 (459)
T 2z83_A 80 SAVQR-----EHQGNEIVDVMCHATLTHRLMSP----NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAA 145 (459)
T ss_dssp -------------CCCSEEEEEHHHHHHHHHSC----C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCE
T ss_pred ccccc-----CCCCCcEEEEEchHHHHHHhhcc----ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCcc
Confidence 21111 11234568889999887766543 4578899999999997 44444322221 236889
Q ss_pred EEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHH
Q 002040 651 TVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDAL 730 (976)
Q Consensus 651 ~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l 730 (976)
+|+||||++..+..+... ..|+..... . . ....+..++..|.. ..+++||||+++..++.+
T Consensus 146 ~il~SAT~~~~~~~~~~~--~~pi~~~~~--~------------~-~~~~~~~~~~~l~~--~~~~~LVF~~s~~~~~~l 206 (459)
T 2z83_A 146 AIFMTATPPGTTDPFPDS--NAPIHDLQD--E------------I-PDRAWSSGYEWITE--YAGKTVWFVASVKMGNEI 206 (459)
T ss_dssp EEEECSSCTTCCCSSCCC--SSCEEEEEC--C------------C-CSSCCSSCCHHHHH--CCSCEEEECSCHHHHHHH
T ss_pred EEEEEcCCCcchhhhccC--CCCeEEecc--c------------C-CcchhHHHHHHHHh--cCCCEEEEeCChHHHHHH
Confidence 999999998653222110 222221110 0 0 01111112233333 267999999999999999
Q ss_pred HHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEE--------------------eC
Q 002040 731 FRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVIN--------------------FD 790 (976)
Q Consensus 731 ~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~--------------------~d 790 (976)
+..|...++.+..+||. +|..++..|++|.++|||||+++++|||||+ .+||+ |+
T Consensus 207 ~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d 281 (459)
T 2z83_A 207 AMCLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNP 281 (459)
T ss_dssp HHHHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSC
T ss_pred HHHHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccC
Confidence 99999999999999995 6778999999999999999999999999999 99999 77
Q ss_pred CCCCHHHHHHHhcccCCCCC-ccEEEEEecCC--CcCchHHH
Q 002040 791 APNHYEDYVHRVGRTGRAGR-KGCAITFISEE--DAKYSPDL 829 (976)
Q Consensus 791 ~p~s~~~y~Qr~GR~gR~g~-~g~~~~~~~~~--d~~~~~~i 829 (976)
+|.++..|+||+|||||.|. +|.|++|++.. +...+..+
T Consensus 282 ~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~~~~~~~~~~~ 323 (459)
T 2z83_A 282 SPITSASAAQRRGRVGRNPNQVGDEYHYGGATSEDDSNLAHW 323 (459)
T ss_dssp EECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHH
T ss_pred CCCCHHHHHHhccccCCCCCCCCeEEEEEcccccchhhhhhh
Confidence 99999999999999999997 99999999876 54444444
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=7.1e-35 Score=337.52 Aligned_cols=269 Identities=21% Similarity=0.210 Sum_probs=193.9
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 582 (976)
.|+++|++++||||||++|++|++..+.. .++++|||+||++||.|++..+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 37899999999999999999999976654 36789999999999999987765 4455544443211
Q ss_pred HHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHh-cCCCCcEEEEeccCcHH
Q 002040 583 QISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQN-IRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~-~~~~~q~i~~SAT~~~~ 661 (976)
.-..+..+.++|.+.+...+... ..+.++++|||||||++ +.++..+...+... .++..|+|+||||+++.
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~~----~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~ 137 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQG----VRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGT 137 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHHT----CCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTC
T ss_pred ---cCCCCceEEEEchHHHHHHHhcC----ccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcc
Confidence 11234677788999887666542 35788999999999986 33333343333333 25689999999999874
Q ss_pred HHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCc
Q 002040 662 VEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (976)
Q Consensus 662 ~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~ 741 (976)
+..+... ..| +.. +........+..++..|.. ..+++||||+++..++.++..|...++.+
T Consensus 138 ~~~~~~~--~~~--------------i~~-~~~~~~~~~~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 138 TEAFPPS--NSP--------------IID-EETRIPDKAWNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp CCSSCCC--SSC--------------CEE-EECCCCSSCCSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hhhhcCC--CCc--------------eee-ccccCCHHHHHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 2211100 011 111 0000111112223344443 26799999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcE-----------------EEEeCCCCCHHHHHHHhcc
Q 002040 742 LSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELEL-----------------VINFDAPNHYEDYVHRVGR 804 (976)
Q Consensus 742 ~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~-----------------VI~~d~p~s~~~y~Qr~GR 804 (976)
..+||. +|..++..|++|.++|||||+++++||||| +.+ ||+++.|.+..+|+||+||
T Consensus 199 ~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR 273 (431)
T 2v6i_A 199 LYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGR 273 (431)
T ss_dssp EEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTT
T ss_pred EEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhc
Confidence 999997 578899999999999999999999999999 544 6788999999999999999
Q ss_pred cCCCCC-ccEEEEEe
Q 002040 805 TGRAGR-KGCAITFI 818 (976)
Q Consensus 805 ~gR~g~-~g~~~~~~ 818 (976)
+||.|. .|.+++|.
T Consensus 274 ~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 274 IGRNPEKLGDIYAYS 288 (431)
T ss_dssp SSCCTTCCCCEEEEC
T ss_pred cCCCCCCCCeEEEEc
Confidence 999985 45556555
No 52
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3e-34 Score=308.84 Aligned_cols=237 Identities=38% Similarity=0.640 Sum_probs=200.4
Q ss_pred hcCceeccCCCCC--cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 452 QLELKIHGKDVPK--PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 452 ~~~i~~~g~~~p~--pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
.+.+.++|...|. ++.+|.+++|++.+.+.|..+||..|+|+|.++|+.++.++++|++++||||||++|++|++.++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l 85 (253)
T 1wrb_A 6 SIPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHL 85 (253)
T ss_dssp CCCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred hCceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHH
Confidence 3446678888887 99999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCC----CCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHH
Q 002040 530 KDQPPV----AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDIL 605 (976)
Q Consensus 530 ~~~~~~----~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l 605 (976)
...... ....++++|||+||++||.|++..+..++...++.+.+++||.....+...+..+++|+|+||++|.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 86 VCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp HTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred HhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 754311 1234679999999999999999999999988899999999999988888888888999999999999988
Q ss_pred HhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhc--CC--CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCc
Q 002040 606 CTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNI--RP--DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (976)
Q Consensus 606 ~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~--~~--~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~ 681 (976)
.... ..+..+.+|||||||+|++++|...+..++..+ +. ..|+|+||||+++.+..++..++.+|+.+.++..
T Consensus 166 ~~~~---~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 166 EKNK---ISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp HTTS---BCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred HcCC---CChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 6542 467889999999999999999999999999854 33 6899999999999999999999999999988776
Q ss_pred ccccCCceEE
Q 002040 682 SVVNKDITQL 691 (976)
Q Consensus 682 ~~~~~~i~q~ 691 (976)
......|.|.
T Consensus 243 ~~~~~~i~q~ 252 (253)
T 1wrb_A 243 GSTSDSIKQE 252 (253)
T ss_dssp ----------
T ss_pred CCCcCCceec
Confidence 6665566553
No 53
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.8e-34 Score=347.36 Aligned_cols=308 Identities=16% Similarity=0.152 Sum_probs=192.6
Q ss_pred CCCcHHHHHHHHHHhc----C-CCEEEEcCCCCchHHHHHHHHHHHHhcC-CCCCCCCCCeEEEEccCHHHHHHHH-HHH
Q 002040 488 EKPMPIQAQALPVIMS----G-RDCIGVAKTGSGKTLAFVLPMLRHIKDQ-PPVAAGDGPVGLIMAPTRELVQQIH-SDI 560 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~----g-~d~i~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~~~~~vLIl~Ptr~La~Q~~-~~~ 560 (976)
..|+|+|.++|+.++. + +++|++++||||||++++..+...+... .......++++||||||++|+.||+ +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 3699999999999875 4 5689999999999999665555444321 0111124688999999999999998 666
Q ss_pred HHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcC-CcccccCCceEEEecCcccccccCCchHHH
Q 002040 561 RKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSG-GKITNLRRVTYLVMDEADRMFDMGFEPQIT 639 (976)
Q Consensus 561 ~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~-~~~~~l~~~~~vVlDEah~~~~~~f~~~i~ 639 (976)
..| +..+..+.++. +..+.+|+|+||+.|...+.... .....+..+++|||||||++...+ ...+.
T Consensus 257 ~~~----~~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPF----GDARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTT----CSSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhc----chhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 654 44444444432 23468999999999987653211 112345678999999999987543 24556
Q ss_pred HHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcc----cccCCceEEEEe---------------------
Q 002040 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRS----VVNKDITQLVEV--------------------- 694 (976)
Q Consensus 640 ~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~----~~~~~i~q~~~~--------------------- 694 (976)
.++..++ ..++|+||||+..........+++.++........ .........+..
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 6677664 47899999998754333334444444322110000 000000000000
Q ss_pred ------cCc-------chHHHHHH----HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCC--------CceeccCCCC
Q 002040 695 ------RPE-------SDRFLRLL----ELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY--------PCLSLHGAKD 749 (976)
Q Consensus 695 ------~~~-------~~k~~~l~----~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~--------~~~~lhg~~~ 749 (976)
... ..+...++ ..+......+++||||+++..|+.++..|...+. .+..+||.++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~ 482 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG 482 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh
Confidence 000 01122222 2333333457999999999999999999987543 2778999986
Q ss_pred HHHHHHHHHHhccCCcc---EEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCC
Q 002040 750 QTDRESTISDFKSNVCN---LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGR 810 (976)
Q Consensus 750 ~~~R~~~~~~F~~g~~~---vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~ 810 (976)
. .|..++..|++|... |||||+++++|||+|++++||++++|+++..|+|++||+||.|.
T Consensus 483 ~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 483 K-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp H-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred H-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 4 799999999998766 88999999999999999999999999999999999999999874
No 54
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=4e-34 Score=361.05 Aligned_cols=332 Identities=15% Similarity=0.137 Sum_probs=232.1
Q ss_pred CCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 488 EKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
..|+|+|.+++..++.. .++|++++||+|||++++..+...+... ...++|||||+ .|+.||..+|.+++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 46899999999998864 4789999999999999888777666532 23479999999 99999999997654
Q ss_pred hcCcEEEEeeCCCChHHHHHH---HhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCch-HHHHH
Q 002040 566 VMGVRCVPVYGGSGVAQQISE---LKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEP-QITRI 641 (976)
Q Consensus 566 ~~~~~~~~~~gg~~~~~~~~~---l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~-~i~~i 641 (976)
++.+.++.|+. ....... .....+|+|+|++.|...... ........+++|||||||++.+.+... ....+
T Consensus 224 --~l~v~v~~~~~-~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~--~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~ 298 (968)
T 3dmq_A 224 --NLRFALFDDER-YAEAQHDAYNPFDTEQLVICSLDFARRSKQR--LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQA 298 (968)
T ss_dssp --CCCCEECCHHH-HHHHHHTTCSSSTTCSEEEECHHHHHTSTTT--THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHH
T ss_pred --CCCEEEEccch-hhhhhhhcccccccCCEEEEcHHHHhhCHHH--HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHH
Confidence 66666554432 2111111 112469999999987432100 011234578999999999987655332 22233
Q ss_pred HHhc-CCCCcEEEEeccCcHH----HHHHHHHHcCC--------------------------------------------
Q 002040 642 VQNI-RPDRQTVLFSATFPRQ----VEILARKVLNK-------------------------------------------- 672 (976)
Q Consensus 642 l~~~-~~~~q~i~~SAT~~~~----~~~l~~~~l~~-------------------------------------------- 672 (976)
+..+ ....++|++||||... +..+...+...
T Consensus 299 l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~ 378 (968)
T 3dmq_A 299 IEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIG 378 (968)
T ss_dssp HHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTC
T ss_pred HHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhc
Confidence 3333 3456799999998431 01111000000
Q ss_pred ------------------------------------CeEEEeCC---cccccCCceEEE---------------------
Q 002040 673 ------------------------------------PVEIQVGG---RSVVNKDITQLV--------------------- 692 (976)
Q Consensus 673 ------------------------------------~~~i~~~~---~~~~~~~i~q~~--------------------- 692 (976)
.+.+.... ..++...+....
T Consensus 379 ~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~ 458 (968)
T 3dmq_A 379 EQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARK 458 (968)
T ss_dssp TTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCS
T ss_pred chhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhh
Confidence 00000000 000000000000
Q ss_pred ------------------------EecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHH-CCCCceeccCC
Q 002040 693 ------------------------EVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLK-HGYPCLSLHGA 747 (976)
Q Consensus 693 ------------------------~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~-~~~~~~~lhg~ 747 (976)
.......|+..|..+|.. ...+++||||+++..++.|+..|.. .|+.+..+||+
T Consensus 459 ~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~-~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~ 537 (968)
T 3dmq_A 459 SAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS-HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537 (968)
T ss_dssp SGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH-TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTT
T ss_pred hhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh-CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 122334577888888876 4578999999999999999999995 69999999999
Q ss_pred CCHHHHHHHHHHhccCC--ccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCc
Q 002040 748 KDQTDRESTISDFKSNV--CNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKY 825 (976)
Q Consensus 748 ~~~~~R~~~~~~F~~g~--~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 825 (976)
|++.+|..++..|++|. ++|||||+++++|||+|++++||+|++|+++..|+|++||+||.|+.|.|++|+.......
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ 617 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTA 617 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSH
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChH
Confidence 99999999999999998 9999999999999999999999999999999999999999999999997777665544555
Q ss_pred hHHHHHHH
Q 002040 826 SPDLVKAL 833 (976)
Q Consensus 826 ~~~i~~~l 833 (976)
...|.+.+
T Consensus 618 ee~i~~~~ 625 (968)
T 3dmq_A 618 QSVLVRWY 625 (968)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55566655
No 55
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=299.36 Aligned_cols=217 Identities=40% Similarity=0.726 Sum_probs=187.2
Q ss_pred ccCCCCCccccccc-CCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCC-
Q 002040 458 HGKDVPKPIKTWHQ-TGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPV- 535 (976)
Q Consensus 458 ~g~~~p~pi~~~~~-~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~- 535 (976)
.+..+|.|+.+|.+ +++++.+++.|..+||..|+|+|.++|+.+++|+++|+++|||||||++|++|++.++......
T Consensus 10 ~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~ 89 (228)
T 3iuy_A 10 EKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISR 89 (228)
T ss_dssp SCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC------
T ss_pred ccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchh
Confidence 34567999999999 8999999999999999999999999999999999999999999999999999999888653211
Q ss_pred CCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCccccc
Q 002040 536 AAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 536 ~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
....++++|||+||++||.|++..+..+. ..++.+.+++||.....+...+..+++|+|+||++|.+++.... ..+
T Consensus 90 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~---~~~ 165 (228)
T 3iuy_A 90 EQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNS---VNL 165 (228)
T ss_dssp ---CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTC---CCC
T ss_pred hccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC---cCc
Confidence 12357899999999999999999999986 45889999999998888888888899999999999999876543 467
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEe
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~ 678 (976)
.++++|||||||++++++|...+..++..++++.|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 166 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 166 RSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred ccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 889999999999999999999999999999999999999999999999999999999987753
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=7.7e-34 Score=341.55 Aligned_cols=280 Identities=20% Similarity=0.215 Sum_probs=207.7
Q ss_pred HHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEE
Q 002040 494 QAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVP 573 (976)
Q Consensus 494 Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~ 573 (976)
|.......+.++++|++||||||||+.++.. +... +.++|++||++||.|++..+.. .|+.+..
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~~al~~----l~~~--------~~gl~l~PtR~LA~Qi~~~l~~----~g~~v~l 208 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTYHAIQK----YFSA--------KSGVYCGPLKLLAHEIFEKSNA----AGVPCDL 208 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHHHHHHH----HHHS--------SSEEEEESSHHHHHHHHHHHHH----TTCCEEE
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHHHHHHH----HHhc--------CCeEEEeCHHHHHHHHHHHHHh----cCCcEEE
Confidence 3334445678999999999999999843333 3321 2359999999999999999877 4788999
Q ss_pred eeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC-CCCcEE
Q 002040 574 VYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR-PDRQTV 652 (976)
Q Consensus 574 ~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~-~~~q~i 652 (976)
++|+..... ..-....+++++|++.+ ..+..+++|||||||++++.+|...+..++..++ ...+++
T Consensus 209 ltG~~~~iv--~TpGr~~~il~~T~e~~-----------~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il 275 (677)
T 3rc3_A 209 VTGEERVTV--QPNGKQASHVSCTVEMC-----------SVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLC 275 (677)
T ss_dssp ECSSCEECC--STTCCCCSEEEEEGGGC-----------CSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEE
T ss_pred EECCeeEEe--cCCCcccceeEecHhHh-----------hhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEE
Confidence 999864400 00001256777776543 2346789999999999999999999999998887 678999
Q ss_pred EEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHH
Q 002040 653 LFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFR 732 (976)
Q Consensus 653 ~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~ 732 (976)
++|||.+ .+..++... ...+.+........ + .+.... +..+... ....||||+++..++.++.
T Consensus 276 ~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~~~---l----~~~~~~------l~~l~~~--~~g~iIf~~s~~~ie~la~ 338 (677)
T 3rc3_A 276 GEPAAID-LVMELMYTT-GEEVEVRDYKRLTP---I----SVLDHA------LESLDNL--RPGDCIVCFSKNDIYSVSR 338 (677)
T ss_dssp ECGGGHH-HHHHHHHHH-TCCEEEEECCCSSC---E----EECSSC------CCSGGGC--CTTEEEECSSHHHHHHHHH
T ss_pred eccchHH-HHHHHHHhc-CCceEEEEeeecch---H----HHHHHH------HHHHHhc--CCCCEEEEcCHHHHHHHHH
Confidence 9999953 344444333 34443322111100 0 000000 0111111 3455889999999999999
Q ss_pred HHHHCCCCceeccCCCCHHHHHHHHHHhcc--CCccEEEecCcccccCCCCCCcEEEEeCC--------------CCCHH
Q 002040 733 DLLKHGYPCLSLHGAKDQTDRESTISDFKS--NVCNLLIATSVAARGLDVKELELVINFDA--------------PNHYE 796 (976)
Q Consensus 733 ~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~--g~~~vLVaT~v~~~GlDi~~v~~VI~~d~--------------p~s~~ 796 (976)
.|...++.+..+||+|++.+|..++..|++ |.++|||||+++++|||| ++++||+++. |.+..
T Consensus 339 ~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~ 417 (677)
T 3rc3_A 339 QIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTS 417 (677)
T ss_dssp HHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHH
T ss_pred HHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHH
Confidence 999999999999999999999999999999 899999999999999999 9999999999 88999
Q ss_pred HHHHHhcccCCCCCc---cEEEEEecC
Q 002040 797 DYVHRVGRTGRAGRK---GCAITFISE 820 (976)
Q Consensus 797 ~y~Qr~GR~gR~g~~---g~~~~~~~~ 820 (976)
.|+||+|||||.|.. |.|++++..
T Consensus 418 ~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 418 QALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp HHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred HHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 999999999999964 777666543
No 57
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=296.44 Aligned_cols=210 Identities=40% Similarity=0.665 Sum_probs=192.7
Q ss_pred CCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCe
Q 002040 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~ 542 (976)
+.++.+|.++++++.+...|..+||..|+++|.++|+.++.|+++|++++||||||++|++|++..+...+ .+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCce
Confidence 45678899999999999999999999999999999999999999999999999999999999999887642 3678
Q ss_pred EEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEE
Q 002040 543 GLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (976)
Q Consensus 543 vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vV 622 (976)
+|||+||++|+.|+++.+..++..+++.+.+++||.....+...+..+++|+|+||++|.+++.... ...+..+++||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~--~~~l~~~~~lV 191 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK--GFNLRALKYLV 191 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST--TCCCTTCCEEE
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC--CcCccccCEEE
Confidence 9999999999999999999999989999999999999888888888899999999999999887532 24578899999
Q ss_pred ecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeC
Q 002040 623 MDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (976)
Q Consensus 623 lDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~ 679 (976)
|||||++++++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.++
T Consensus 192 iDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 192 MDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp ECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred EcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999999999887653
No 58
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.1e-32 Score=326.78 Aligned_cols=309 Identities=18% Similarity=0.226 Sum_probs=218.1
Q ss_pred CCCcHHHHHHHHHHh----cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 488 EKPMPIQAQALPVIM----SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il----~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
..|+|+|.+++.++. .+.++|++++||+|||++++..+...... +....+|||||+ .|+.||..+|.+|
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 368999999999874 57899999999999999976555444322 224579999995 5889999999998
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHH
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQ 643 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~ 643 (976)
+. ++.+.+++|+... ......+|+|+||+.|..... .....+++|||||||++.+.+ ......+.
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~------l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~ 173 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR------LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVK 173 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH------HHTCCEEEEEEETGGGGSCTT--SHHHHHHH
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch------hcCCCcCEEEEeCccccCCHh--HHHHHHHH
Confidence 75 4556666665422 112357999999998865432 233468999999999987654 34555666
Q ss_pred hcCCCCcEEEEeccCcHH----HHHHHH---------------------------------HHcCCCeEEEeCCc-----
Q 002040 644 NIRPDRQTVLFSATFPRQ----VEILAR---------------------------------KVLNKPVEIQVGGR----- 681 (976)
Q Consensus 644 ~~~~~~q~i~~SAT~~~~----~~~l~~---------------------------------~~l~~~~~i~~~~~----- 681 (976)
.++ ..+.+++||||..+ +..+.. .++ .|+.+.....
T Consensus 174 ~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~ 251 (500)
T 1z63_A 174 ELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAII 251 (500)
T ss_dssp TSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHH
T ss_pred hhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchh
Confidence 663 45789999998432 111111 111 1222211100
Q ss_pred ccccCCceEEEEec--------------------------------------------------------CcchHHHHHH
Q 002040 682 SVVNKDITQLVEVR--------------------------------------------------------PESDRFLRLL 705 (976)
Q Consensus 682 ~~~~~~i~q~~~~~--------------------------------------------------------~~~~k~~~l~ 705 (976)
...+......+.+. ..+.|+..+.
T Consensus 252 ~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~ 331 (500)
T 1z63_A 252 NDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTM 331 (500)
T ss_dssp TTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHH
T ss_pred hcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHH
Confidence 00111111111111 1235566666
Q ss_pred HHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHC-CCCceeccCCCCHHHHHHHHHHhccC-Ccc-EEEecCcccccCCCC
Q 002040 706 ELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIATSVAARGLDVK 781 (976)
Q Consensus 706 ~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-vLVaT~v~~~GlDi~ 781 (976)
.+|.... .+.++||||++...++.++..|... |+.+..+||++++.+|..++..|++| .+. |||||+++++|||++
T Consensus 332 ~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~ 411 (500)
T 1z63_A 332 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 411 (500)
T ss_dssp HHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCT
T ss_pred HHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchh
Confidence 6676654 3569999999999999999999885 99999999999999999999999988 454 899999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEE--EEEecC
Q 002040 782 ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISE 820 (976)
Q Consensus 782 ~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~--~~~~~~ 820 (976)
++++||+|++|||+..|+|++||++|.|+.+.| |.|++.
T Consensus 412 ~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~ 452 (500)
T 1z63_A 412 SANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISV 452 (500)
T ss_dssp TCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEET
T ss_pred hCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeC
Confidence 999999999999999999999999999987765 445554
No 59
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-33 Score=298.72 Aligned_cols=232 Identities=34% Similarity=0.600 Sum_probs=199.1
Q ss_pred HHHHHHhhcCceeccCCCCCcccccccC----CCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 445 EVSAYRKQLELKIHGKDVPKPIKTWHQT----GLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 445 ~~~~~~~~~~i~~~g~~~p~pi~~~~~~----~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
++..+++.+.+.+.|..+|.|+.+|.++ ++++.+++.|..+||..|+|+|.++|+.++.|+++|+++|||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677888899999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH-HHHhcCCeEEEeCch
Q 002040 521 FVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI-SELKRGTEIVVCTPG 599 (976)
Q Consensus 521 ~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~-~~l~~~~~Iiv~Tp~ 599 (976)
|++|++..+... ...++++|||+||++||.|++..+..++...++.+.+++|+....... .....+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 999999988642 235778999999999999999999999988898888887765333221 112346799999999
Q ss_pred hHHHHHHhcCCcccccCCceEEEecCcccccc---cCCchHHHHHHHhcC-CCCcEEEEeccCcHHHHHHHHHHcCCCeE
Q 002040 600 RMIDILCTSGGKITNLRRVTYLVMDEADRMFD---MGFEPQITRIVQNIR-PDRQTVLFSATFPRQVEILARKVLNKPVE 675 (976)
Q Consensus 600 ~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~---~~f~~~i~~il~~~~-~~~q~i~~SAT~~~~~~~l~~~~l~~~~~ 675 (976)
+|.+++.... ....+.++.+|||||||++++ .+|...+..++..+. +..|+|+||||+|+.+..++..++.+|+.
T Consensus 159 ~l~~~l~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~ 237 (245)
T 3dkp_A 159 RLIYLLKQDP-PGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVIS 237 (245)
T ss_dssp HHHHHHHSSS-CSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEE
T ss_pred HHHHHHHhCC-CCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEE
Confidence 9999886642 234688899999999999988 468888888887764 57899999999999999999999999999
Q ss_pred EEeCCc
Q 002040 676 IQVGGR 681 (976)
Q Consensus 676 i~~~~~ 681 (976)
+.++..
T Consensus 238 i~~~~~ 243 (245)
T 3dkp_A 238 VSIGAR 243 (245)
T ss_dssp EEECC-
T ss_pred EEeCCC
Confidence 988754
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=5.9e-33 Score=295.61 Aligned_cols=213 Identities=32% Similarity=0.539 Sum_probs=178.8
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCC
Q 002040 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (976)
Q Consensus 459 g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~ 538 (976)
..+.|.++.+|.+++|++.++..|..+||..|+|+|.++|+.++.++++|++++||||||++|++|++..+... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567889999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcC-CeEEEeCchhHHHHHHhcCCcccccCC
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRG-TEIVVCTPGRMIDILCTSGGKITNLRR 617 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~-~~Iiv~Tp~~L~~~l~~~~~~~~~l~~ 617 (976)
.++++|||+||++|+.|++..+..++...++.+..++||.....+...+..+ ++|+|+||++|.+++.... ..+..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~---~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRY---LSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTS---SCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCC---cCccc
Confidence 4678999999999999999999999988899999999998877777667665 8999999999999886532 45778
Q ss_pred ceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeC
Q 002040 618 VTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (976)
Q Consensus 618 ~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~ 679 (976)
+.+|||||||++++++|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+.+.
T Consensus 174 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 174 IKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp CCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred CcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999887653
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=305.81 Aligned_cols=215 Identities=28% Similarity=0.474 Sum_probs=186.7
Q ss_pred ceeccCCCCC---cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcC--CCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 455 LKIHGKDVPK---PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSG--RDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 455 i~~~g~~~p~---pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g--~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
+.+.+.+++. ++.+|.+++|++.++..|..+||..|+|+|.++||.++.| +++|++|+||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 3444444443 4678999999999999999999999999999999999997 9999999999999999999999987
Q ss_pred hcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhc
Q 002040 530 KDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTS 608 (976)
Q Consensus 530 ~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~ 608 (976)
... ..++++|||+||++||.|++..+..++..+ ++.+.+++||....... ..+++|+||||++|.+++...
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 643 357899999999999999999999998765 68888888887653321 456799999999999998543
Q ss_pred CCcccccCCceEEEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeC
Q 002040 609 GGKITNLRRVTYLVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (976)
Q Consensus 609 ~~~~~~l~~~~~vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~ 679 (976)
....+.++.+|||||||+|++ .+|...+..|+..+++.+|+|+||||++..+..++..++.+|+.|.+.
T Consensus 229 --~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 229 --KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp --CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred --CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 235678999999999999998 689999999999999999999999999999999999999999988764
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.2e-31 Score=311.88 Aligned_cols=321 Identities=20% Similarity=0.221 Sum_probs=239.5
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
+|+ .|++.|..+...+..|+ |..+.||+|||+++++|++...+. |..|.||+||..||.|-+.++..++
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHH
Confidence 565 48999999999888877 899999999999999999855443 5679999999999999999999999
Q ss_pred hhcCcEEEEeeCC--------------------------------------------------CChHHHHHHHhcCCeEE
Q 002040 565 KVMGVRCVPVYGG--------------------------------------------------SGVAQQISELKRGTEIV 594 (976)
Q Consensus 565 ~~~~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~~Ii 594 (976)
..+|+.|.+++.. .+..+..... .|+|+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCE
Confidence 9999999999882 1111222222 38999
Q ss_pred EeCchhH-HHHHHhcC---CcccccCCceEEEecCccccc-cc--------------------------------CCc--
Q 002040 595 VCTPGRM-IDILCTSG---GKITNLRRVTYLVMDEADRMF-DM--------------------------------GFE-- 635 (976)
Q Consensus 595 v~Tp~~L-~~~l~~~~---~~~~~l~~~~~vVlDEah~~~-~~--------------------------------~f~-- 635 (976)
++|..-| .++|..+- ....-...+.|.||||+|.++ +. .|.
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 9999887 45555431 111224678899999999752 10 000
Q ss_pred -------------------------------hHHHHHHHh------cCCC------------------------------
Q 002040 636 -------------------------------PQITRIVQN------IRPD------------------------------ 648 (976)
Q Consensus 636 -------------------------------~~i~~il~~------~~~~------------------------------ 648 (976)
..+..+... +..+
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 000001000 0000
Q ss_pred -------------------------------CcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceE-EEEecC
Q 002040 649 -------------------------------RQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQ-LVEVRP 696 (976)
Q Consensus 649 -------------------------------~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q-~~~~~~ 696 (976)
.++.+||||.......+...|.. .+. .++ ...+...+.+ .+.+..
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l-~vv-~IP-tnkp~~R~d~~d~vy~t 455 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM-EVV-VIP-THKPMIRKDHDDLVFRT 455 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC-CEE-ECC-CSSCCCCEECCCEEESS
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC-eEE-EEC-CCCCcceeecCcEEEec
Confidence 34889999998877766555533 332 222 1222222222 245567
Q ss_pred cchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 697 ESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
...|+..++..|.... .+.++||||+|+..++.|+..|...|+++..+||++.+.++..+...|..| .|||||++|+
T Consensus 456 ~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAg 533 (822)
T 3jux_A 456 QKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTT
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhh
Confidence 7889999999888754 467999999999999999999999999999999996666665555666665 5999999999
Q ss_pred ccCCCC--------CCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCc
Q 002040 776 RGLDVK--------ELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDA 823 (976)
Q Consensus 776 ~GlDi~--------~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~ 823 (976)
||+||+ +..+||+|+.|.+...|+|++||+||+|.+|.+++|++..|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred CCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999998 677999999999999999999999999999999999998874
No 63
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.6e-32 Score=290.48 Aligned_cols=229 Identities=33% Similarity=0.502 Sum_probs=197.0
Q ss_pred HHHHHHHHhhcCceeccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHH
Q 002040 443 PEEVSAYRKQLELKIHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 443 ~~~~~~~~~~~~i~~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+++..+++.+.. ..+.++.+|.++++++.+...|..+||..|+|+|.++++.++.|+++|++++||||||++|+
T Consensus 6 ~~~~~~~~~~~~~-----~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYEK-----INVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTTT-----CCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhcccc-----CCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 4455666655542 12567889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHH
Q 002040 523 LPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMI 602 (976)
Q Consensus 523 l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~ 602 (976)
+|++..+..... ....++++||++||++|+.|++..+..++...++.+.+++||.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998875321 1234788999999999999999999999888889999999998877766555 46899999999999
Q ss_pred HHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCC
Q 002040 603 DILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGG 680 (976)
Q Consensus 603 ~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~ 680 (976)
.++.... ...+..+.+|||||||++++++|...+..++..+++..|+|+||||+++.+..++..++.+|..+.+..
T Consensus 159 ~~l~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~~ 234 (236)
T 2pl3_A 159 QHMDETV--SFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234 (236)
T ss_dssp HHHHHCS--SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECCC
T ss_pred HHHHhcC--CcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeCC
Confidence 8886542 245778999999999999999999999999999999999999999999999999999999999887653
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=2.3e-32 Score=289.62 Aligned_cols=211 Identities=29% Similarity=0.470 Sum_probs=183.0
Q ss_pred cCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCC
Q 002040 459 GKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAG 538 (976)
Q Consensus 459 g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~ 538 (976)
+...|.+..+|.++++++.+...|..+||..|+|+|.++|+.++.|+++|++++||+|||++|++|++..+... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45567888999999999999999999999999999999999999999999999999999999999999887542 2
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCC
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRR 617 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~ 617 (976)
.++++|||+||++|+.|+++.+..++... ++.+.+++||.....+...+ .+++|+|+||++|.+++.... ..+.+
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~---~~~~~ 166 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDY---LNPGS 166 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTS---SCGGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCC---ccccc
Confidence 46789999999999999999999988765 88999999999887765555 468999999999999886532 45778
Q ss_pred ceEEEecCcccccccC-CchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEe
Q 002040 618 VTYLVMDEADRMFDMG-FEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (976)
Q Consensus 618 ~~~vVlDEah~~~~~~-f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~ 678 (976)
+.+|||||||++++++ |...+..++..++...|+|+||||+|+.+..++..++.+|+.+.+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999999999999997 999999999999989999999999999999999999999987654
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=3.5e-32 Score=287.04 Aligned_cols=213 Identities=31% Similarity=0.510 Sum_probs=182.4
Q ss_pred CCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCC
Q 002040 460 KDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGD 539 (976)
Q Consensus 460 ~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~ 539 (976)
...|+++.+|.++++++.++..|..+||..|+|+|.++++.++.++++|+++|||+|||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3467888999999999999999999999999999999999999999999999999999999999999887542 34
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCce
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVT 619 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~ 619 (976)
++++||++||++|+.|++..+..++...++.+..++||.....+...+.. ++|+|+||++|..++.... ..+..+.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~---~~~~~~~ 157 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRR---FRTDKIK 157 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTS---SCCTTCC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCC---cchhhCc
Confidence 67899999999999999999999998889999999999877766555544 8999999999998886542 4578899
Q ss_pred EEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCc
Q 002040 620 YLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGR 681 (976)
Q Consensus 620 ~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~ 681 (976)
+|||||||++++++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.+...
T Consensus 158 ~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 158 MFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999988876543
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.6e-32 Score=288.56 Aligned_cols=207 Identities=31% Similarity=0.518 Sum_probs=184.6
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
|+.+|.++++++.+.+.|..+||..|+|+|.++|+.+++|+++|++++||||||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45689999999999999999999999999999999999999999999999999999999999887642 2467899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhc----CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVM----GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
||+||++|+.|+++.+..++... ++.+.+++||.........+..+++|+|+||++|.+++.... ..+..+.+
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~---~~~~~~~~ 153 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQA---LDVHTAHI 153 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTC---CCGGGCCE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCC---CCcCcceE
Confidence 99999999999999999998776 788999999987766555555678999999999998886532 45778999
Q ss_pred EEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeC
Q 002040 621 LVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVG 679 (976)
Q Consensus 621 vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~ 679 (976)
|||||||++++++|...+..++..+++..|+|+||||+|..+..++..++.+|..+.+.
T Consensus 154 lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 154 LVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred EEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 99999999999999999999999999899999999999999999999999999887654
No 67
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-31 Score=332.90 Aligned_cols=373 Identities=16% Similarity=0.246 Sum_probs=250.3
Q ss_pred ccccccccchhhhcCCHHHHHHHHhhcCce---eccCCCCCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-
Q 002040 427 FRKNFYIEVKEIARMTPEEVSAYRKQLELK---IHGKDVPKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM- 502 (976)
Q Consensus 427 f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~g~~~p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il- 502 (976)
+....|.....+..+.++.+..|....... ......+.....|..+...+... .-..|+|+|.+++.+++
T Consensus 177 y~~~tWe~~~~~~~~~~~~i~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~------~~~~Lr~yQ~egv~~l~~ 250 (800)
T 3mwy_W 177 YDEATWENATDIVKLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI------KGGELRDFQLTGINWMAF 250 (800)
T ss_dssp STTCBCCBHHHHTTTCHHHHHHHHHTTTCTTCSTTCCCCCSCCCCCCCCSSCCTTC------CSSCCCTHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHhhhcccCCcchhcccccCCcccccccCCCcc------CCCCcCHHHHHHHHHHHH
Confidence 344455555556666777787776644321 11111122222344333222211 12468999999999887
Q ss_pred ---cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCC
Q 002040 503 ---SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG 579 (976)
Q Consensus 503 ---~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~ 579 (976)
.+.++|++++||+|||++++..+...+... .....+||||| ..|+.||..+|.+++. ++.+++++|+..
T Consensus 251 ~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~-----~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~ 322 (800)
T 3mwy_W 251 LWSKGDNGILADEMGLGKTVQTVAFISWLIFAR-----RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQK 322 (800)
T ss_dssp HHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHH-----SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSH
T ss_pred HhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhc-----CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHH
Confidence 788999999999999999776665554332 12345799999 5678999999999874 466666666655
Q ss_pred hHHHHHHHh------------cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC
Q 002040 580 VAQQISELK------------RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 580 ~~~~~~~l~------------~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~ 647 (976)
....+.... ..++|+|+|++.|...... .....+.+|||||||++-+. ...+...+..+.
T Consensus 323 ~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~-----l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~~l~- 394 (800)
T 3mwy_W 323 SRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE-----LGSIKWQFMAVDEAHRLKNA--ESSLYESLNSFK- 394 (800)
T ss_dssp HHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH-----HHTSEEEEEEETTGGGGCCS--SSHHHHHHTTSE-
T ss_pred HHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH-----HhcCCcceeehhhhhhhcCc--hhHHHHHHHHhh-
Confidence 444433321 2468999999998764422 12235889999999998653 345555666653
Q ss_pred CCcEEEEeccCc----HHHHHHHHHHcCCC-----------------------------eEEEeCCccc---ccCCceEE
Q 002040 648 DRQTVLFSATFP----RQVEILARKVLNKP-----------------------------VEIQVGGRSV---VNKDITQL 691 (976)
Q Consensus 648 ~~q~i~~SAT~~----~~~~~l~~~~l~~~-----------------------------~~i~~~~~~~---~~~~i~q~ 691 (976)
....|++||||. ..+..++..+.... +.+.-....+ .+......
T Consensus 395 ~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~ 474 (800)
T 3mwy_W 395 VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERI 474 (800)
T ss_dssp EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEE
T ss_pred hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEE
Confidence 345789999983 22222222221111 1110000000 00000011
Q ss_pred EEe--------------------------------------------------------------------------cCc
Q 002040 692 VEV--------------------------------------------------------------------------RPE 697 (976)
Q Consensus 692 ~~~--------------------------------------------------------------------------~~~ 697 (976)
+.+ ...
T Consensus 475 v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 554 (800)
T 3mwy_W 475 LRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMS 554 (800)
T ss_dssp EEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhc
Confidence 110 012
Q ss_pred chHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCc---cEEEecCc
Q 002040 698 SDRFLRLLELLGEWYE-KGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC---NLLIATSV 773 (976)
Q Consensus 698 ~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~---~vLVaT~v 773 (976)
+.|+..|..+|..+.. +.++||||++...++.|..+|...|+.+..|||+++..+|..++..|+++.. .|||+|.+
T Consensus 555 s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~a 634 (800)
T 3mwy_W 555 SGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRA 634 (800)
T ss_dssp CHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHH
T ss_pred ChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEeccc
Confidence 4466667777776654 4599999999999999999999999999999999999999999999998654 59999999
Q ss_pred ccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEE--EEEecCC
Q 002040 774 AARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (976)
Q Consensus 774 ~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~--~~~~~~~ 821 (976)
++.|||++.+++||+||+|||+..++|++||++|.|++..| |.|++..
T Consensus 635 gg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 635 GGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKD 684 (800)
T ss_dssp HTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETT
T ss_pred ccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCC
Confidence 99999999999999999999999999999999999987554 4456654
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.5e-32 Score=279.74 Aligned_cols=202 Identities=31% Similarity=0.593 Sum_probs=184.5
Q ss_pred cccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEE
Q 002040 467 KTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIM 546 (976)
Q Consensus 467 ~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl 546 (976)
.+|.+++|++.+++.|..+||..|+|+|.++++.++.++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999887542 246789999
Q ss_pred ccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 547 APTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 547 ~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
+||++|+.|+++.+..++... ++.+.+++||.....+...+..+++|+|+||++|...+.... ..+..+.+|||||
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~lViDE 154 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGV---AKVDHVQMIVLDE 154 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTC---SCCTTCCEEEEET
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCC---cCcccCCEEEEEC
Confidence 999999999999999998877 789999999999888877777889999999999988886532 4678899999999
Q ss_pred cccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEE
Q 002040 626 ADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEI 676 (976)
Q Consensus 626 ah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i 676 (976)
||++++.+|...+..++..+++..|+|+||||+|+.+..++..++.+|+.+
T Consensus 155 ah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999999999899999999999999999999999999765
No 69
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.98 E-value=1.6e-30 Score=315.80 Aligned_cols=322 Identities=17% Similarity=0.214 Sum_probs=223.5
Q ss_pred CCcHHHHHHHHHHh---------cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSD 559 (976)
Q Consensus 489 ~p~~~Q~~~i~~il---------~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~ 559 (976)
.|+|+|.+++.++. .+..+|++++||+|||++++..+...+...+. .......+|||||+ .|+.||..+
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 58899999999985 34678999999999999987777665554322 11223468999997 788999999
Q ss_pred HHHHHhhcCcEEEEeeCCCChHH--HHHHHhc------CCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc
Q 002040 560 IRKFAKVMGVRCVPVYGGSGVAQ--QISELKR------GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 560 ~~~~~~~~~~~~~~~~gg~~~~~--~~~~l~~------~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
|.+|+.. .+.++.++||..... .+..+.. .++|+|+|++.|..... ......+++|||||||++-+
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~-----~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE-----VLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT-----TTTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH-----HhhcCCccEEEEECceecCC
Confidence 9999865 566777777764322 1222211 36899999998865432 12335689999999999865
Q ss_pred cCCchHHHHHHHhcCCCCcEEEEeccCcHHH----H---------------HHHHHHc----------------------
Q 002040 632 MGFEPQITRIVQNIRPDRQTVLFSATFPRQV----E---------------ILARKVL---------------------- 670 (976)
Q Consensus 632 ~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~----~---------------~l~~~~l---------------------- 670 (976)
.. ......+..+. ....|++||||-.+- . .+...|.
T Consensus 207 ~~--~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~ 283 (644)
T 1z3i_X 207 SD--NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQK 283 (644)
T ss_dssp TC--HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHH
T ss_pred hh--hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHH
Confidence 43 34445555554 456899999973220 0 0000000
Q ss_pred -------CCCeEEEeCCcc---cccCCceEEEEec---------------------------------------------
Q 002040 671 -------NKPVEIQVGGRS---VVNKDITQLVEVR--------------------------------------------- 695 (976)
Q Consensus 671 -------~~~~~i~~~~~~---~~~~~i~q~~~~~--------------------------------------------- 695 (976)
-.|+.+.-.... ..+..+.+.+.+.
T Consensus 284 ~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp 363 (644)
T 1z3i_X 284 LQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHP 363 (644)
T ss_dssp HHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCH
Confidence 000000000000 0000011111100
Q ss_pred --------------------------------CcchHHHHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHHCCCCc
Q 002040 696 --------------------------------PESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPC 741 (976)
Q Consensus 696 --------------------------------~~~~k~~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~~~ 741 (976)
..+.|+..|..++..+. .+.++||||++...++.|...|...|+.+
T Consensus 364 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~ 443 (644)
T 1z3i_X 364 ALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLY 443 (644)
T ss_dssp HHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCE
Confidence 11334444444544432 35799999999999999999999999999
Q ss_pred eeccCCCCHHHHHHHHHHhccCCc---cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccE--EEE
Q 002040 742 LSLHGAKDQTDRESTISDFKSNVC---NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGC--AIT 816 (976)
Q Consensus 742 ~~lhg~~~~~~R~~~~~~F~~g~~---~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~--~~~ 816 (976)
..+||++++.+|..++..|++|.. .|||+|.++++|||++++++||+||+|||+..|.|++||++|.|+... +|.
T Consensus 444 ~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~ 523 (644)
T 1z3i_X 444 VRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYR 523 (644)
T ss_dssp EEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEE
T ss_pred EEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEE
Confidence 999999999999999999999865 489999999999999999999999999999999999999999998764 445
Q ss_pred EecCC
Q 002040 817 FISEE 821 (976)
Q Consensus 817 ~~~~~ 821 (976)
|++..
T Consensus 524 lv~~~ 528 (644)
T 1z3i_X 524 LLSTG 528 (644)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 56654
No 70
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.98 E-value=2.6e-31 Score=276.55 Aligned_cols=204 Identities=41% Similarity=0.693 Sum_probs=184.3
Q ss_pred ccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc
Q 002040 468 TWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA 547 (976)
Q Consensus 468 ~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~ 547 (976)
+|.++++++.+...|..+||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6899999999999999999999999999999999999999999999999999999999998865321 23578999999
Q ss_pred cCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 548 PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 548 Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
||++|+.|+++.+..++.. +.+..++||.....+...+..+++|+|+||++|..++.... ..+..+++|||||||
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~iViDEah 154 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGV---LDLSRVEVAVLDEAD 154 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTS---SCCTTCSEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCC---cchhhceEEEEEChh
Confidence 9999999999999998754 67888999998887777777889999999999999887632 467889999999999
Q ss_pred cccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEEe
Q 002040 628 RMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQV 678 (976)
Q Consensus 628 ~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~ 678 (976)
++++++|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.+
T Consensus 155 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 155 EMLSMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred HhhccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999999999999999999999999999999999987764
No 71
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.8e-31 Score=288.32 Aligned_cols=205 Identities=33% Similarity=0.525 Sum_probs=182.2
Q ss_pred cccccCC--CCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEE
Q 002040 467 KTWHQTG--LTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGL 544 (976)
Q Consensus 467 ~~~~~~~--l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vL 544 (976)
.+|..++ +++.++..|..+||..|+|+|.++|+.++.++++|++|+||||||++|++|++..+...... ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566666 99999999999999999999999999999999999999999999999999999988764321 23478899
Q ss_pred EEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 545 IMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 545 Il~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
||+||++||.|++..+..++...++.+.+++||.....+...+..+++|+||||++|.+++.... ...+.++.+||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~--~~~~~~l~~lViD 208 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP--GFMYKNLQCLVID 208 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT--TCCCTTCCEEEEC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC--CcccccCCEEEEc
Confidence 99999999999999999999989999999999999988888888889999999999998887642 2357889999999
Q ss_pred CcccccccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCe
Q 002040 625 EADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (976)
Q Consensus 625 Eah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~ 674 (976)
|||+|++++|...+..++..+++.+|+|+||||+|+.+..++..++..+.
T Consensus 209 Eah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 209 EADRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp SHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred ChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999987654
No 72
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=3.6e-31 Score=278.50 Aligned_cols=207 Identities=28% Similarity=0.509 Sum_probs=181.6
Q ss_pred CCcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCe
Q 002040 463 PKPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPV 542 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~ 542 (976)
+....+|.+++|++.+.+.|..+||..|+|+|.++++.+++++++|++++||+|||++|++|++..+... ..+++
T Consensus 10 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 84 (220)
T 1t6n_A 10 SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVS 84 (220)
T ss_dssp ----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCCC
T ss_pred cccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCEE
Confidence 4455679999999999999999999999999999999999999999999999999999999999887542 23568
Q ss_pred EEEEccCHHHHHHHHHHHHHHHhhc-CcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCceE
Q 002040 543 GLIMAPTRELVQQIHSDIRKFAKVM-GVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTY 620 (976)
Q Consensus 543 vLIl~Ptr~La~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~ 620 (976)
+||||||++|+.||+..+..++... ++.+.+++||.....+...+.. .++|+|+||++|..++.... ..+..+++
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~---~~~~~~~~ 161 (220)
T 1t6n_A 85 VLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKS---LNLKHIKH 161 (220)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTS---SCCTTCCE
T ss_pred EEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCC---CCcccCCE
Confidence 9999999999999999999998776 7899999999988777766665 46999999999998886532 46788999
Q ss_pred EEecCcccccc-cCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCeEEE
Q 002040 621 LVMDEADRMFD-MGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQ 677 (976)
Q Consensus 621 vVlDEah~~~~-~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~ 677 (976)
|||||||++++ .+|...+..++..+++..|+|+||||+++.+..++..++.+|+.+.
T Consensus 162 lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 162 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 99999999986 5788889999999988999999999999999999999999998764
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.97 E-value=1.9e-30 Score=324.44 Aligned_cols=313 Identities=16% Similarity=0.133 Sum_probs=216.1
Q ss_pred CCCcHHHHHHHHHHhc--------------CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHH
Q 002040 488 EKPMPIQAQALPVIMS--------------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELV 553 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~--------------g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La 553 (976)
..|+|+|..|++.++. ++++|++++||||||+++ ++++..+... +..+++|||||+++|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~ 343 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLD 343 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCC
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHH
Confidence 3599999999999875 368999999999999997 5666554431 2346899999999999
Q ss_pred HHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHh-cCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc
Q 002040 554 QQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELK-RGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM 632 (976)
Q Consensus 554 ~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~-~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~ 632 (976)
.||...|..|+.. .++++.+.......+. .+.+|+|+||++|..++.... ....+..+.+|||||||++..
T Consensus 344 ~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~-~~~~~~~~~lvIiDEAHrs~~- 415 (1038)
T 2w00_A 344 YQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES-DLPVYNQQVVFIFDECHRSQF- 415 (1038)
T ss_dssp HHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC-CCGGGGSCEEEEEESCCTTHH-
T ss_pred HHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc-chhccccccEEEEEccchhcc-
Confidence 9999999887642 2355666666656664 468999999999998876432 112456789999999999763
Q ss_pred CCchHHHHHHHhcCCCCcEEEEeccCcHHHH----HHHHHHcCCCeEEEeCCc----ccccCCceEEEE-----------
Q 002040 633 GFEPQITRIVQNIRPDRQTVLFSATFPRQVE----ILARKVLNKPVEIQVGGR----SVVNKDITQLVE----------- 693 (976)
Q Consensus 633 ~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~----~l~~~~l~~~~~i~~~~~----~~~~~~i~q~~~----------- 693 (976)
...+..|+..+ ++.++|+|||||..... .....+++.++....... +... .+...+.
T Consensus 416 --~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~-p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 416 --GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVL-KFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp --HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSC-CEEEEECCCCGGGHHHHT
T ss_pred --hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcC-CeEEEEEeccchhhhccc
Confidence 23345555666 45799999999874321 112223333322110000 0000 0000000
Q ss_pred --------------ecCcchHHHHHHHHHHhhh-----------cCCcEEEEecCHHHHHHHHHHHHHCC----------
Q 002040 694 --------------VRPESDRFLRLLELLGEWY-----------EKGKILIFVHSQEKCDALFRDLLKHG---------- 738 (976)
Q Consensus 694 --------------~~~~~~k~~~l~~~l~~~~-----------~~~kvLIF~~s~~~~~~l~~~L~~~~---------- 738 (976)
......++..++..|...+ .+.++||||+++..|..++..|...+
T Consensus 492 e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 492 ETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 0012223334444332211 23589999999999999999997754
Q ss_pred --CCc-eeccCC----------C----------CHH-----------------------------HHHHHHHHhccCCcc
Q 002040 739 --YPC-LSLHGA----------K----------DQT-----------------------------DRESTISDFKSNVCN 766 (976)
Q Consensus 739 --~~~-~~lhg~----------~----------~~~-----------------------------~R~~~~~~F~~g~~~ 766 (976)
+.+ +++||. + ++. .|..++..|++|.++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 455 455643 2 221 478899999999999
Q ss_pred EEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCc----cEEEEEec
Q 002040 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRK----GCAITFIS 819 (976)
Q Consensus 767 vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~----g~~~~~~~ 819 (976)
|||+|+++.+|+|+|.+ .|+++|.|.+...|+|++||++|.+.. |.++.|+.
T Consensus 652 ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 99999999999999999 677899999999999999999998753 77777765
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1e-27 Score=283.92 Aligned_cols=322 Identities=22% Similarity=0.273 Sum_probs=236.9
Q ss_pred HcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 484 KLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 484 ~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
.+|+ .||++|..++|.+++|+ |+.+.||+|||++|++|++..... |..|+||+||++||.|++.++..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3798 89999999999999998 999999999999999999755432 457999999999999999999999
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhH-HHHHHhcC---CcccccC---CceEEEecCccccc-ccCCc
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRM-IDILCTSG---GKITNLR---RVTYLVMDEADRMF-DMGFE 635 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L-~~~l~~~~---~~~~~l~---~~~~vVlDEah~~~-~~~f~ 635 (976)
+..+|+.+.+++||.+.... .+..+++|+|+||+.| +++|..+. .....+. .+.++||||||.|+ +.+..
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeart 221 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEART 221 (997)
T ss_dssp HHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTS
T ss_pred HHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCC
Confidence 99999999999999885443 3344699999999999 88887652 1123466 89999999999876 22211
Q ss_pred h---------------HHHHHHHhcCC-----------------------------------------------------
Q 002040 636 P---------------QITRIVQNIRP----------------------------------------------------- 647 (976)
Q Consensus 636 ~---------------~i~~il~~~~~----------------------------------------------------- 647 (976)
+ .+..++..+..
T Consensus 222 PLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~ 301 (997)
T 2ipc_A 222 PLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELA 301 (997)
T ss_dssp CEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHH
T ss_pred CeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHH
Confidence 0 11111111110
Q ss_pred ----------------------------------------------------------------------------CCcE
Q 002040 648 ----------------------------------------------------------------------------DRQT 651 (976)
Q Consensus 648 ----------------------------------------------------------------------------~~q~ 651 (976)
-..+
T Consensus 302 ~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kL 381 (997)
T 2ipc_A 302 HMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKR 381 (997)
T ss_dssp HHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHh
Confidence 0236
Q ss_pred EEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhc-CCcEEEEecCHHHHHHH
Q 002040 652 VLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYE-KGKILIFVHSQEKCDAL 730 (976)
Q Consensus 652 i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~-~~kvLIF~~s~~~~~~l 730 (976)
.+||+|.......+...|-.+ +.+.+...+...... ....+.....|+..++..+...+. +.||||+|.|++..+.|
T Consensus 382 sGMTGTA~tE~~Ef~~iY~l~-Vv~IPTn~p~~R~D~-~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~L 459 (997)
T 2ipc_A 382 AGMTGTAKTEEKEFQEIYGMD-VVVVPTNRPVIRKDF-PDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERL 459 (997)
T ss_dssp EEEESSCGGGHHHHHHHHCCC-EEECCCSSCCCCEEE-EEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHH
T ss_pred eecCCCchHHHHHHHHHhCCC-EEEcCCCCCcccccC-CCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHH
Confidence 788888876666555544433 333222222222222 233456778899998887776654 56999999999999999
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 002040 731 FRDLL--------------------------------------------------------------------------- 735 (976)
Q Consensus 731 ~~~L~--------------------------------------------------------------------------- 735 (976)
+..|.
T Consensus 460 S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (997)
T 2ipc_A 460 SQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAV 539 (997)
T ss_dssp HHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHH
Confidence 99998
Q ss_pred -HCCCCceeccCCCCHHHHHHHHHHhccCC-ccEEEecCcccccCCCCCC-------------------c----------
Q 002040 736 -KHGYPCLSLHGAKDQTDRESTISDFKSNV-CNLLIATSVAARGLDVKEL-------------------E---------- 784 (976)
Q Consensus 736 -~~~~~~~~lhg~~~~~~R~~~~~~F~~g~-~~vLVaT~v~~~GlDi~~v-------------------~---------- 784 (976)
..|+++.++++.....+- .|+. +.|. -.|-|||++|+||.||.-- .
T Consensus 540 ~~~gI~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (997)
T 2ipc_A 540 LRQGIPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKM 616 (997)
T ss_dssp HHHCCCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHH
T ss_pred HHcCCCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccc
Confidence 456777777766443332 2222 2343 3599999999999998543 1
Q ss_pred ---------------------------------------------EEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEec
Q 002040 785 ---------------------------------------------LVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 785 ---------------------------------------------~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
+||--..+.|.---.|..||+||.|.+|.+..|++
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LS 696 (997)
T 2ipc_A 617 VAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVS 696 (997)
T ss_dssp HHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEE
T ss_pred cccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEE
Confidence 78888888888889999999999999999999988
Q ss_pred CCCc
Q 002040 820 EEDA 823 (976)
Q Consensus 820 ~~d~ 823 (976)
-+|.
T Consensus 697 LeDd 700 (997)
T 2ipc_A 697 FDDD 700 (997)
T ss_dssp SSSH
T ss_pred CChH
Confidence 7653
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=6e-27 Score=283.98 Aligned_cols=176 Identities=23% Similarity=0.304 Sum_probs=137.4
Q ss_pred CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHH
Q 002040 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQE 725 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~ 725 (976)
...|+|+||||+++..... ....+...+.......+ .+.+.+...++..|+..|..+. .+.++||||+++.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTGLLDP----LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCCCCCC----eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 3578999999998753211 11111111111111111 1233444566677777776654 4669999999999
Q ss_pred HHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC-----CCCHHHHHH
Q 002040 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVH 800 (976)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~-----p~s~~~y~Q 800 (976)
.++.|+..|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|||+|++++||+++. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 899999999
Q ss_pred HhcccCCCCCccEEEEEecCCCcCchHHHHH
Q 002040 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLVK 831 (976)
Q Consensus 801 r~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~ 831 (976)
|+|||||.| .|.|++|+++.+..+...|.+
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~~ 560 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIEE 560 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHHH
Confidence 999999995 899999998876655444443
No 76
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.95 E-value=1.5e-27 Score=244.31 Aligned_cols=181 Identities=35% Similarity=0.517 Sum_probs=148.4
Q ss_pred HHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceecc
Q 002040 666 ARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLH 745 (976)
Q Consensus 666 ~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lh 745 (976)
.+.++.+|..+.++........|.|.+.......|+..|+.+|... .+++||||++...++.++..|...|+.+..+|
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~--~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lh 85 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT--PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIH 85 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS--CSCEEEECSCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEe
Confidence 4578888988888877778889999999999999999999988763 56899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CcC
Q 002040 746 GAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAK 824 (976)
Q Consensus 746 g~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~-d~~ 824 (976)
|+|++.+|..++..|++|.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..
T Consensus 86 g~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 86 GGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp TTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999976 677
Q ss_pred chHHHHHHHhhccCCCChHHHHHH
Q 002040 825 YSPDLVKALELSEQVVPDDLKALA 848 (976)
Q Consensus 825 ~~~~i~~~l~~~~~~vp~~l~~l~ 848 (976)
++..|.+.+....+.+|+.|..+.
T Consensus 166 ~~~~l~~~l~~~~~~~p~~l~~~~ 189 (191)
T 2p6n_A 166 VLMDLKALLLEAKQKVPPVLQVLH 189 (191)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHSTT
T ss_pred HHHHHHHHHHHccCcCCHHHHhhc
Confidence 888999999999999999876543
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=235.97 Aligned_cols=168 Identities=40% Similarity=0.626 Sum_probs=143.6
Q ss_pred ccccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhc
Q 002040 682 SVVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFK 761 (976)
Q Consensus 682 ~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~ 761 (976)
...+.+|.|.+..+....|+..|..+|......+++||||++...++.|+..|...|+.+..+||+|++.+|..++..|+
T Consensus 14 ~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 14 GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp --CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999999988656789999999999999999999999999999999999999999999999
Q ss_pred cCCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCC
Q 002040 762 SNVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVP 841 (976)
Q Consensus 762 ~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp 841 (976)
+|.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....+.+|
T Consensus 94 ~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 94 SGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp HTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCC
T ss_pred cCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 002040 842 DDLKALAD 849 (976)
Q Consensus 842 ~~l~~l~~ 849 (976)
.+|..++.
T Consensus 174 ~~l~~~a~ 181 (185)
T 2jgn_A 174 SWLENMAY 181 (185)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 99887764
No 78
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.94 E-value=1e-25 Score=272.96 Aligned_cols=175 Identities=19% Similarity=0.261 Sum_probs=137.8
Q ss_pred CCCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcchHHHHHHHHHHhhh-cCCcEEEEecCHH
Q 002040 647 PDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESDRFLRLLELLGEWY-EKGKILIFVHSQE 725 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~ 725 (976)
...|+++||||+++..... ....+...+.......+ .+.+.....++..|+..|..+. .+.++||||+++.
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l~~p----~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 456 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGLLDP----LIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKK 456 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCCCCC----EEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCCCCC----eEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 4679999999998654221 12222221111111111 1233444556677777776655 4569999999999
Q ss_pred HHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcccccCCCCCCcEEEEeCC-----CCCHHHHHH
Q 002040 726 KCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAARGLDVKELELVINFDA-----PNHYEDYVH 800 (976)
Q Consensus 726 ~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~~GlDi~~v~~VI~~d~-----p~s~~~y~Q 800 (976)
.++.|+..|...|+.+..+||++++.+|..++..|++|.+.|||||+++++|||+|++++||+++. |.+...|+|
T Consensus 457 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQ 536 (661)
T 2d7d_A 457 MSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 536 (661)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHH
T ss_pred HHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HhcccCCCCCccEEEEEecCCCcCchHHHH
Q 002040 801 RVGRTGRAGRKGCAITFISEEDAKYSPDLV 830 (976)
Q Consensus 801 r~GR~gR~g~~g~~~~~~~~~d~~~~~~i~ 830 (976)
|+|||||. ..|.|++|+++.+..+...|.
T Consensus 537 r~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 537 TIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999998 689999999987655444443
No 79
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=6.5e-25 Score=219.08 Aligned_cols=153 Identities=36% Similarity=0.621 Sum_probs=141.4
Q ss_pred cccCCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhcc
Q 002040 683 VVNKDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (976)
Q Consensus 683 ~~~~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 762 (976)
....++.|.+.......|+..|..+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTE-NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHH-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhc-CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34556889999999999999999988764 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhc
Q 002040 763 NVCNLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (976)
Q Consensus 763 g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (976)
|.+.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+..++..|.+.+...
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999998888888887776543
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=6e-25 Score=221.23 Aligned_cols=158 Identities=33% Similarity=0.603 Sum_probs=142.6
Q ss_pred CCceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCc
Q 002040 686 KDITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (976)
Q Consensus 686 ~~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 765 (976)
..+.|.+.......|+..|..+|... ..+++||||++...++.++..|...|+.+..+||+|++.+|..++..|++|.+
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS-CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC-CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 46788898899999999999988764 56799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCC-CcCchHHHHHHHhhccCCCChHH
Q 002040 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEE-DAKYSPDLVKALELSEQVVPDDL 844 (976)
Q Consensus 766 ~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~i~~~l~~~~~~vp~~l 844 (976)
.|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++. +..++..|.+.+......+|..+
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 99999999999999999999999999999999999999999999999999999875 45677788888777766777653
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.92 E-value=5.8e-25 Score=219.96 Aligned_cols=156 Identities=31% Similarity=0.560 Sum_probs=137.3
Q ss_pred CceEEEEecCcch-HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCc
Q 002040 687 DITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (976)
Q Consensus 687 ~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 765 (976)
.|.|.+....... |+..|..++... ..+++||||++...++.++..|...++.+..+||+|++.+|..++..|++|.+
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 4677777777666 999998888764 56899999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhccCCCChH
Q 002040 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSEQVVPDD 843 (976)
Q Consensus 766 ~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~~~vp~~ 843 (976)
+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+....+.+|..
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSD 159 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCcc
Confidence 999999999999999999999999999999999999999999999999999999998888888888877766666654
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=2.4e-24 Score=217.69 Aligned_cols=154 Identities=30% Similarity=0.519 Sum_probs=135.1
Q ss_pred ccCCceEEEEecCcch-HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhcc
Q 002040 684 VNKDITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKS 762 (976)
Q Consensus 684 ~~~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~ 762 (976)
....|.|.+..++... |+..|..++... ..+++||||++...+..++..|...|+.+..+||+|++.+|..++..|++
T Consensus 4 ~~~~i~q~~~~~~~~~~K~~~L~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 4 TLNNIRQYYVLCEHRKDKYQALCNIYGSI-TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CBCCEEEEEEECSSHHHHHHHHHHHHTTS-CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred ccCCceEEEEEcCChHhHHHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3457888888877655 999888888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCccEEEecCcccccCCCCCCcEEEEeCCC------CCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhc
Q 002040 763 NVCNLLIATSVAARGLDVKELELVINFDAP------NHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELS 836 (976)
Q Consensus 763 g~~~vLVaT~v~~~GlDi~~v~~VI~~d~p------~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~ 836 (976)
|.++|||||+++++|||+|++++||+|++| .++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+...
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 88999999999999999999999999988877777777776554
Q ss_pred cC
Q 002040 837 EQ 838 (976)
Q Consensus 837 ~~ 838 (976)
..
T Consensus 163 ~~ 164 (175)
T 2rb4_A 163 IK 164 (175)
T ss_dssp CE
T ss_pred cc
Confidence 33
No 83
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=1.1e-23 Score=219.42 Aligned_cols=148 Identities=30% Similarity=0.519 Sum_probs=134.4
Q ss_pred eEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEE
Q 002040 689 TQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768 (976)
Q Consensus 689 ~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 768 (976)
.+.....+...|+..|..++... ..+++||||+++..++.++..|...|+.+..+||+|++.+|..++..|++|.++||
T Consensus 7 ~~~~~~~~~~~k~~~l~~ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 7 EEEAVPAPVRGRLEVLSDLLYVA-SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp CCEEEECCTTSHHHHHHHHHHHH-CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eeeEEeCCHHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 34455667788999999988754 57899999999999999999999999999999999999999999999999999999
Q ss_pred EecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhcc
Q 002040 769 IATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (976)
Q Consensus 769 VaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (976)
|||+++++|||||++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+...+..|.+.+....
T Consensus 86 vaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~ 154 (212)
T 3eaq_A 86 VATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 154 (212)
T ss_dssp EECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCC
T ss_pred EecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999999999999998888888888876543
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.90 E-value=3.5e-23 Score=225.96 Aligned_cols=150 Identities=30% Similarity=0.508 Sum_probs=134.9
Q ss_pred CceEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCcc
Q 002040 687 DITQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCN 766 (976)
Q Consensus 687 ~i~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~ 766 (976)
.+.+.+.......|+..|..++.... .+++||||+++..++.|+..|...|+.+..+||+|++.+|..++..|++|.++
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 35677778888999999999887654 78999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhhcc
Q 002040 767 LLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALELSE 837 (976)
Q Consensus 767 vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~~~ 837 (976)
|||||+++++|||||++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+..++..|.+.+....
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~ 151 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRF 151 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCC
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999999999999999999999999999888888888876543
No 85
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.79 E-value=4.2e-24 Score=214.81 Aligned_cols=148 Identities=32% Similarity=0.483 Sum_probs=133.7
Q ss_pred CceEEEEecCc-chHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCc
Q 002040 687 DITQLVEVRPE-SDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVC 765 (976)
Q Consensus 687 ~i~q~~~~~~~-~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~ 765 (976)
+|.|.+...+. ..|+..|..++.. ...+++||||++...++.++..|...++.+..+||+|++.+|..++..|++|.+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~-~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ-PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 45566666666 7788888888765 345799999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEEEEEecCCCcCchHHHHHHHhh
Q 002040 766 NLLIATSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCAITFISEEDAKYSPDLVKALEL 835 (976)
Q Consensus 766 ~vLVaT~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~i~~~l~~ 835 (976)
+|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+.|.|++|+++.+..++..+.+.+..
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 9999999999999999999999999999999999999999999999999999999888887777776543
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=1.9e-22 Score=210.75 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=122.7
Q ss_pred cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHH-HHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQ-IHSDIRKF 563 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q-~~~~~~~~ 563 (976)
.....|+|+|.++++.++.++++|++++||+|||++|+++++..+..... ...++++||+|||++|+.| |...+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34457999999999999999999999999999999999999887754211 1235689999999999999 77888887
Q ss_pred HhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCC---cccccCCceEEEecCcccccccCCchHHHH
Q 002040 564 AKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGG---KITNLRRVTYLVMDEADRMFDMGFEPQITR 640 (976)
Q Consensus 564 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~---~~~~l~~~~~vVlDEah~~~~~~f~~~i~~ 640 (976)
... ++.+..++|+.........+..+++|+|+||+.|...+..... ....+..+.+|||||||++...++...+..
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 654 7888888888765544444445689999999999988865321 113467899999999999987766666543
Q ss_pred HHHhc--------------CCCCcEEEEecc
Q 002040 641 IVQNI--------------RPDRQTVLFSAT 657 (976)
Q Consensus 641 il~~~--------------~~~~q~i~~SAT 657 (976)
.+... .+..++|+||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 32211 167899999998
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.86 E-value=5.3e-21 Score=227.31 Aligned_cols=303 Identities=19% Similarity=0.221 Sum_probs=168.8
Q ss_pred cCCCCCcHHHHHHHHH----HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 485 LNYEKPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 485 ~~~~~p~~~Q~~~i~~----il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
.|| .|+|+|.+++.. +..++++|+.+|||+|||++|++|++.. ++++||++||++|+.|+..++
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 456 799999998654 5688999999999999999999998754 568999999999999999887
Q ss_pred HHHHhhcCcEEEEeeCCCCh--------H------------------------HHHH---------------HHhcCCeE
Q 002040 561 RKFAKVMGVRCVPVYGGSGV--------A------------------------QQIS---------------ELKRGTEI 593 (976)
Q Consensus 561 ~~~~~~~~~~~~~~~gg~~~--------~------------------------~~~~---------------~l~~~~~I 593 (976)
.. ++++++.+.|.... . ..+. ....+++|
T Consensus 72 ~~----l~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KL----LGLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GG----GTCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hh----cCCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 66 35555555443210 0 0000 11235799
Q ss_pred EEeCchhHHHHHHhcCCc----ccccCCceEEEecCcccccccC--Cc-----h--------------------------
Q 002040 594 VVCTPGRMIDILCTSGGK----ITNLRRVTYLVMDEADRMFDMG--FE-----P-------------------------- 636 (976)
Q Consensus 594 iv~Tp~~L~~~l~~~~~~----~~~l~~~~~vVlDEah~~~~~~--f~-----~-------------------------- 636 (976)
|||||..|++.+...... ...+....+|||||||+|.+.. |. .
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~ 227 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDY 227 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 999999998755432100 0124567899999999883310 00 0
Q ss_pred --------------------------------HHHHHHHh-----------------------------------cCC--
Q 002040 637 --------------------------------QITRIVQN-----------------------------------IRP-- 647 (976)
Q Consensus 637 --------------------------------~i~~il~~-----------------------------------~~~-- 647 (976)
.+..++.. +.|
T Consensus 228 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~ 307 (540)
T 2vl7_A 228 INLLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSD 307 (540)
T ss_dssp HHHHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSC
T ss_pred HHHHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHH
Confidence 00000000 000
Q ss_pred -----------CCcEEEEeccCcHHHHHHHHHHcCCCeEEEeCCcccccCCceEEEE---ecCc-ch---HHHHHHHHHH
Q 002040 648 -----------DRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQLVE---VRPE-SD---RFLRLLELLG 709 (976)
Q Consensus 648 -----------~~q~i~~SAT~~~~~~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~---~~~~-~~---k~~~l~~~l~ 709 (976)
...+|++|||+++.+. +...| ...+. ... ...+.+. +... .. -+..+...|.
T Consensus 308 ~~~~l~~~~~~~~~~IltSATL~p~~~-~~~~f-----~~~~~-~~~---g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~ 377 (540)
T 2vl7_A 308 VNQLIEDALNVKTFKVLMSGTLPESLT-LTNSY-----KIVVN-ESY---GRGEYYYCPNVTSELRKRNSNIPIYSILLK 377 (540)
T ss_dssp HHHHHHHHTCCSSCEEEEESSCCTTCC-CTTEE-----EEECC-CC----CCCEEEECTTCCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCccCCeEEEcccCCCCcc-cchhc-----CCchh-hee---cCCcceeccccCCCcccccCHHHHHHHHHH
Confidence 0113777777765100 00000 00000 000 0011111 0111 11 1133444444
Q ss_pred hhh--cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEE--ecCcccccCCCCC---
Q 002040 710 EWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLI--ATSVAARGLDVKE--- 782 (976)
Q Consensus 710 ~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV--aT~v~~~GlDi~~--- 782 (976)
... .++.+||||+|...++.++..|.. +. +.++|.. ..+..+++.|+.|. .||+ +|..+++|||+|+
T Consensus 378 ~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~ 451 (540)
T 2vl7_A 378 RIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKEN 451 (540)
T ss_dssp HHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------
T ss_pred HHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcc
Confidence 332 367899999999999999988854 33 4556654 46888999998864 5666 8899999999998
Q ss_pred -CcEEEEeCCCCCH------------------------------HHHHHHhcccCCCCCccEEEEEec
Q 002040 783 -LELVINFDAPNHY------------------------------EDYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 783 -v~~VI~~d~p~s~------------------------------~~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
+.+||+++.|... ..+.|.+||+-|....-.+++++.
T Consensus 452 ~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD 519 (540)
T 2vl7_A 452 LFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCD 519 (540)
T ss_dssp CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEES
T ss_pred cccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEc
Confidence 8999999988521 123599999999754433455554
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.85 E-value=2e-19 Score=214.48 Aligned_cols=309 Identities=17% Similarity=0.141 Sum_probs=198.6
Q ss_pred CCcHHHHHHHHH----HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPV----IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~~----il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.|+|+|.+++.. +..|+++|+.+|||+|||++|++|++.. ++++||++||++|+.|+..++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 589999997764 4578999999999999999999999962 5789999999999999999999887
Q ss_pred hhcCcEEEEeeCCCCh---------------------------------HHHH------------------HHHhcCCeE
Q 002040 565 KVMGVRCVPVYGGSGV---------------------------------AQQI------------------SELKRGTEI 593 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~~---------------------------------~~~~------------------~~l~~~~~I 593 (976)
...+++++++.|+... ...+ .....+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888888774321 1221 122346899
Q ss_pred EEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccC----------------------------------------
Q 002040 594 VVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMG---------------------------------------- 633 (976)
Q Consensus 594 iv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~---------------------------------------- 633 (976)
|||||+.|++.+.... ...+....+|||||||+|.+ .
T Consensus 152 VV~~~~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~ 228 (551)
T 3crv_A 152 IALTYPYFFIDRYREF--IDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVV 228 (551)
T ss_dssp EEEETHHHHCHHHHTT--SCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSC
T ss_pred EEeCchHhcCHHHHHh--cCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998765432 11224678999999998755 1
Q ss_pred ---------------CchHHHHH----------------------------H----------------------------
Q 002040 634 ---------------FEPQITRI----------------------------V---------------------------- 642 (976)
Q Consensus 634 ---------------f~~~i~~i----------------------------l---------------------------- 642 (976)
+...+..+ +
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l 308 (551)
T 3crv_A 229 LPDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYL 308 (551)
T ss_dssp CSCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHH
T ss_pred hccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHH
Confidence 00000000 0
Q ss_pred HhcCCC-CcEEEEeccCcHHHHHHHHHHcCC-CeEE---Ee-CCcccccCCceEEEEec--Cc------chHHHHHHHHH
Q 002040 643 QNIRPD-RQTVLFSATFPRQVEILARKVLNK-PVEI---QV-GGRSVVNKDITQLVEVR--PE------SDRFLRLLELL 708 (976)
Q Consensus 643 ~~~~~~-~q~i~~SAT~~~~~~~l~~~~l~~-~~~i---~~-~~~~~~~~~i~q~~~~~--~~------~~k~~~l~~~l 708 (976)
..+... ..+|++|||+.+ ...+...+... +... .+ ...++ .... ..+... +. ......+...|
T Consensus 309 ~~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~i 385 (551)
T 3crv_A 309 NLLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRV-SGSY-ECYIGVDVTSKYDMRSDNMWKRYADYL 385 (551)
T ss_dssp GGGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEE-EEEEECSCCCCTTTCCHHHHHHHHHHH
T ss_pred HHHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcC-CCce-EEEEeCCCCCccccCCHHHHHHHHHHH
Confidence 001122 578999999987 34344433222 2211 00 11112 1111 112111 10 11234455555
Q ss_pred Hhhh--cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEec--CcccccCCCC---
Q 002040 709 GEWY--EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT--SVAARGLDVK--- 781 (976)
Q Consensus 709 ~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT--~v~~~GlDi~--- 781 (976)
.... .+|.+|||++|...+..++.. .++.+..=..+++ ...+++.|+.+...||+|| ..+..|||+|
T Consensus 386 ~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~ 459 (551)
T 3crv_A 386 LKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELRNND 459 (551)
T ss_dssp HHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCEETT
T ss_pred HHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceecccccccccC
Confidence 4433 367999999999999998873 3444433223445 3557778854344799998 6999999999
Q ss_pred C--CcEEEEeCCCCC---H----------------H-----------HHHHHhcccCCCCCccEEEEEecC
Q 002040 782 E--LELVINFDAPNH---Y----------------E-----------DYVHRVGRTGRAGRKGCAITFISE 820 (976)
Q Consensus 782 ~--v~~VI~~d~p~s---~----------------~-----------~y~Qr~GR~gR~g~~g~~~~~~~~ 820 (976)
+ +.+||+...|.. + . ...|.+||+-|....-.++++++.
T Consensus 460 g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 460 RSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred CcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 4 788998776541 1 1 124999999998655445555543
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=202.68 Aligned_cols=177 Identities=18% Similarity=0.211 Sum_probs=129.2
Q ss_pred HHHcCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHH
Q 002040 482 IRKLNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (976)
Q Consensus 482 l~~~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 561 (976)
+.......++++|.++++.+..|++++++|+||||||+++.++++..+..... ..++.+||++|+++|+.|++..+.
T Consensus 54 ~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 54 LQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHH
Confidence 33334445789999999999999999999999999999999999887765321 235689999999999999988877
Q ss_pred HHHh-hcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccc-cccCCchHHH
Q 002040 562 KFAK-VMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRM-FDMGFEPQIT 639 (976)
Q Consensus 562 ~~~~-~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~-~~~~f~~~i~ 639 (976)
.... ..+..+......... ....+++|+||||++|.+++.. .+.++++|||||||.+ ++++|...+.
T Consensus 131 ~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~------~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 131 FERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA------GIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp HTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH------CCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred HHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh------hhcCCcEEEEECCccCCcchHHHHHHH
Confidence 6543 223333322221100 0113578999999999999864 4788999999999986 7777775444
Q ss_pred HHHHhcCCCCcEEEEeccCcHHHHHHHHHHcCCCe
Q 002040 640 RIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPV 674 (976)
Q Consensus 640 ~il~~~~~~~q~i~~SAT~~~~~~~l~~~~l~~~~ 674 (976)
..+....++.|+|+||||++... ++..+...|+
T Consensus 200 ~~i~~~~~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 200 RDVVQAYPEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHHHHHCTTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred HHHHhhCCCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 44444457899999999999876 5554444443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=4.9e-21 Score=209.03 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=126.5
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
..|+|+|.++++.++.+.++|++++||+|||+++++++...+... ..++||||||++|+.||++.+.+++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999888999999999999999988888776532 3379999999999999999999987666
Q ss_pred CcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCC
Q 002040 568 GVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRP 647 (976)
Q Consensus 568 ~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~ 647 (976)
+..+..+++|..... ....+++|+|+||+.|.... ...+..+++|||||||++.+ ..+..++..+..
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~------~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~ 251 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP------KEWFSQFGMMMNDECHLATG----KSISSIISGLNN 251 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTSC------GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTT
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhhH------HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhc
Confidence 678888888875432 12245899999999774331 13467899999999999863 477888888888
Q ss_pred CCcEEEEeccCcHHH
Q 002040 648 DRQTVLFSATFPRQV 662 (976)
Q Consensus 648 ~~q~i~~SAT~~~~~ 662 (976)
..++|+||||+++..
T Consensus 252 ~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 252 CMFKFGLSGSLRDGK 266 (282)
T ss_dssp CCEEEEECSSCCTTS
T ss_pred CCeEEEEeCCCCCcc
Confidence 899999999998653
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=4e-17 Score=196.16 Aligned_cols=317 Identities=15% Similarity=0.155 Sum_probs=193.3
Q ss_pred CCcHHHHHHHH----HHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALP----VIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFA 564 (976)
Q Consensus 489 ~p~~~Q~~~i~----~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~ 564 (976)
.|+|.|.+.+. .+..|+++|+.||||+|||++|++|++.++.. .+++++|++||++|+.|+.+++..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 58899998885 45689999999999999999999999998764 25789999999999999999999988
Q ss_pred hhcCcEEEEeeCCCC----hHH--------------HHH-----------------------------------------
Q 002040 565 KVMGVRCVPVYGGSG----VAQ--------------QIS----------------------------------------- 585 (976)
Q Consensus 565 ~~~~~~~~~~~gg~~----~~~--------------~~~----------------------------------------- 585 (976)
...+++++.++|+.+ ... .+.
T Consensus 76 ~~~~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~ 155 (620)
T 4a15_A 76 STMKIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFY 155 (620)
T ss_dssp HHSCCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHH
T ss_pred hccCeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHH
Confidence 777788877666431 000 000
Q ss_pred ---------------HHhcCCeEEEeCchhHHHHHHhcCC--cccccCCceEEEecCccccccc----------------
Q 002040 586 ---------------ELKRGTEIVVCTPGRMIDILCTSGG--KITNLRRVTYLVMDEADRMFDM---------------- 632 (976)
Q Consensus 586 ---------------~l~~~~~Iiv~Tp~~L~~~l~~~~~--~~~~l~~~~~vVlDEah~~~~~---------------- 632 (976)
.....++|||+++..|++....... .......-.+|||||||.+.+.
T Consensus 156 ~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~ 235 (620)
T 4a15_A 156 DYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNR 235 (620)
T ss_dssp HHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHH
T ss_pred HHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHH
Confidence 0011578999999877665432110 0001234579999999987210
Q ss_pred ----------CC------chH--------HH-----------------------------------H-------HHH---
Q 002040 633 ----------GF------EPQ--------IT-----------------------------------R-------IVQ--- 643 (976)
Q Consensus 633 ----------~f------~~~--------i~-----------------------------------~-------il~--- 643 (976)
.+ ... +. . +..
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 315 (620)
T 4a15_A 236 ADREAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVE 315 (620)
T ss_dssp HHHHHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 0 000
Q ss_pred ----------------------h---cCC------------------------------CCcEEEEeccCcHHHHHHHHH
Q 002040 644 ----------------------N---IRP------------------------------DRQTVLFSATFPRQVEILARK 668 (976)
Q Consensus 644 ----------------------~---~~~------------------------------~~q~i~~SAT~~~~~~~l~~~ 668 (976)
. ... ...+|++|||+.+ +..+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~ 394 (620)
T 4a15_A 316 NEKEKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDI 394 (620)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHH
T ss_pred hhccccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHH
Confidence 0 000 1235899999986 4444444
Q ss_pred HcCCCeEEEeCCcccccCCceEEEEecC--------cchHHHHHHHHHHhhh--cCCcEEEEecCHHHHHHHHHHHHHCC
Q 002040 669 VLNKPVEIQVGGRSVVNKDITQLVEVRP--------ESDRFLRLLELLGEWY--EKGKILIFVHSQEKCDALFRDLLKHG 738 (976)
Q Consensus 669 ~l~~~~~i~~~~~~~~~~~i~q~~~~~~--------~~~k~~~l~~~l~~~~--~~~kvLIF~~s~~~~~~l~~~L~~~~ 738 (976)
+...+..+.++ .++...+.. .+.... .......+...|.... .+|.+|||++|...++.++..|. .
T Consensus 395 lGl~~~~~~~~-spf~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~ 470 (620)
T 4a15_A 395 TGFEIPFKKIG-EIFPPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--F 470 (620)
T ss_dssp HCCCCCEEECC-CCSCGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--S
T ss_pred hCCCceeeecC-CCCCHHHeE-EEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--h
Confidence 33223333332 222222222 111111 1111233444443332 36889999999999999988876 2
Q ss_pred CCceeccCCCCHHHHHHHHHHhccCCccEEEecC--cccccCCCCC--CcEEEEeCCCCCH-------------------
Q 002040 739 YPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS--VAARGLDVKE--LELVINFDAPNHY------------------- 795 (976)
Q Consensus 739 ~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~--v~~~GlDi~~--v~~VI~~d~p~s~------------------- 795 (976)
+... ...+++...+..+++.|. +...||+||. .++.|||+++ +.+||+...|...
T Consensus 471 ~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~ 548 (620)
T 4a15_A 471 EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKG 548 (620)
T ss_dssp CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCH
T ss_pred cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCC
Confidence 2222 445566678999999999 8889999974 9999999998 7899998877421
Q ss_pred H----------HHHHHhcccCCCCCccEEEEEec
Q 002040 796 E----------DYVHRVGRTGRAGRKGCAITFIS 819 (976)
Q Consensus 796 ~----------~y~Qr~GR~gR~g~~g~~~~~~~ 819 (976)
- ...|.+||+-|.-..--++++++
T Consensus 549 ~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 582 (620)
T 4a15_A 549 WEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILD 582 (620)
T ss_dssp HHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEEC
T ss_pred chHHhHHHHHHHHHHHhCccccCCCceEEEEEEc
Confidence 1 12599999999765544555554
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.75 E-value=3.4e-18 Score=184.29 Aligned_cols=127 Identities=21% Similarity=0.265 Sum_probs=101.0
Q ss_pred cCcchHHHHHHHHHHhhh-cCCcEEEEecCHHHHHHHHHHHHHC-CCCceeccCCCCHHHHHHHHHHhccC-Ccc-EEEe
Q 002040 695 RPESDRFLRLLELLGEWY-EKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLHGAKDQTDRESTISDFKSN-VCN-LLIA 770 (976)
Q Consensus 695 ~~~~~k~~~l~~~l~~~~-~~~kvLIF~~s~~~~~~l~~~L~~~-~~~~~~lhg~~~~~~R~~~~~~F~~g-~~~-vLVa 770 (976)
...+.|+..|..+|..+. .+.++||||++...++.|...|... |+.+..+||++++.+|..++..|++| .+. |||+
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456789999999998765 4569999999999999999999885 99999999999999999999999998 676 7899
Q ss_pred cCcccccCCCCCCcEEEEeCCCCCHHHHHHHhcccCCCCCccEE--EEEecCC
Q 002040 771 TSVAARGLDVKELELVINFDAPNHYEDYVHRVGRTGRAGRKGCA--ITFISEE 821 (976)
Q Consensus 771 T~v~~~GlDi~~v~~VI~~d~p~s~~~y~Qr~GR~gR~g~~g~~--~~~~~~~ 821 (976)
|+++++|||++++++||+||+|||+..|+|++||++|.|+.+.| |.|++..
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999999999999999999999999999999988765 5566653
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.74 E-value=1e-17 Score=177.49 Aligned_cols=139 Identities=22% Similarity=0.143 Sum_probs=110.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhc
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVM 567 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~ 567 (976)
..|+++|.+++..++.+.++|++++||+|||++++.++... +..+||+||+++|+.||+..+.. +
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~----~ 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGI----F 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGG----G
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHh----C
Confidence 47999999999999999999999999999999988776642 45689999999999999998877 3
Q ss_pred CcE-EEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 568 GVR-CVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 568 ~~~-~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
++. +..+.|+.. ...+|+|+||+.+...+.. ....+.+|||||||++.+.. +..++..+
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~------~~~~~~llIiDEaH~l~~~~----~~~i~~~~- 216 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEK------LGNRFMLLIFDEVHHLPAES----YVQIAQMS- 216 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHH------HTTTCSEEEEECSSCCCTTT----HHHHHHTC-
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHH------hcccCCEEEEECCccCCChH----HHHHHHhc-
Confidence 677 777777653 2579999999998765532 12458999999999987654 34455555
Q ss_pred CCCcEEEEeccCcHH
Q 002040 647 PDRQTVLFSATFPRQ 661 (976)
Q Consensus 647 ~~~q~i~~SAT~~~~ 661 (976)
+..++|+||||+++.
T Consensus 217 ~~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 217 IAPFRLGLTATFERE 231 (237)
T ss_dssp CCSEEEEEEESCC--
T ss_pred cCCEEEEEecCCCCC
Confidence 467899999999764
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.72 E-value=2.3e-08 Score=120.02 Aligned_cols=146 Identities=22% Similarity=0.289 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCCchH--HHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 491 MPIQAQALPVIMSGRDCIGVAKTGSGKT--LAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 491 ~~~Q~~~i~~il~g~d~i~~a~TGsGKT--~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
++.|..+++.++.++.+++.|++|+||| +.++++++..+.. ..++.+++++||..+|.++.+.+..++..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4456666654321 2356899999999999999988887766655
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCC
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~ 648 (976)
+...... +... ....+ ..++-.+|+.. .+.... .....+++||||||+ |++ ...+..++..++..
T Consensus 225 l~~~~~~-~~~~--~~~Ti---h~ll~~~~~~~--~~~~~~---~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~ 289 (608)
T 1w36_D 225 LTDEQKK-RIPE--DASTL---HRLLGAQPGSQ--RLRHHA---GNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDH 289 (608)
T ss_dssp CCSCCCC-SCSC--CCBTT---TSCC-------------CT---TSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTT
T ss_pred CCHHHHh-ccch--hhhhh---HhhhccCCCch--HHHhcc---CCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCC
Confidence 4321110 0000 00000 01121222211 011111 122368999999999 554 55778889999888
Q ss_pred CcEEEEecc
Q 002040 649 RQTVLFSAT 657 (976)
Q Consensus 649 ~q~i~~SAT 657 (976)
.|+|++.-+
T Consensus 290 ~~liLvGD~ 298 (608)
T 1w36_D 290 ARVIFLGDR 298 (608)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEcch
Confidence 999998755
No 95
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.32 E-value=1.3e-05 Score=96.43 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=54.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
+..+++.|..|+..++.+.-++|.||+|+|||.+. ..++.++... .+..+||++||...+.++...+..
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHh
Confidence 35688999999999998878899999999999874 4444554432 356799999999999988877754
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.26 E-value=3.7e-05 Score=93.06 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=52.0
Q ss_pred CCcHHHHHHHHHHhcCCC-EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 489 KPMPIQAQALPVIMSGRD-CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d-~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
.+.+-|.+|+..++..++ .||+||+|||||.+.+ .++.++... +.++||++||...+.++...+..
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~-~~I~~l~~~-------~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVV-EIILQAVKQ-------GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHH-HHHHHHHHT-------TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHH-HHHHHHHhC-------CCeEEEEcCchHHHHHHHHHHHh
Confidence 578999999999987665 6888999999998744 444444432 56899999999999988777654
No 97
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.26 E-value=5.3e-06 Score=89.39 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHHhhhcCC-cEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc
Q 002040 697 ESDRFLRLLELLGEWYEKG-KILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA 775 (976)
Q Consensus 697 ~~~k~~~l~~~l~~~~~~~-kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~ 775 (976)
.+.|+..|-.+|..+...+ +||||+++..+.+.|..+|...++.+..+.|......+. -.++.+.|.+.|..++
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~ 181 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGI 181 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCC
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCC
Confidence 5789988888888776544 999999999999999999999999999999986543221 1244555555577777
Q ss_pred ccCC-----CCCCcEEEEeCCCCCHHHH-HHHhcccCCCC----CccEEEEEecCCC
Q 002040 776 RGLD-----VKELELVINFDAPNHYEDY-VHRVGRTGRAG----RKGCAITFISEED 822 (976)
Q Consensus 776 ~GlD-----i~~v~~VI~~d~p~s~~~y-~Qr~GR~gR~g----~~g~~~~~~~~~d 822 (976)
-|+| +..+++||.||+.||+..- +|.+-|++|.| ++-.+|.|++...
T Consensus 182 ~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~T 238 (328)
T 3hgt_A 182 NFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINS 238 (328)
T ss_dssp CTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTS
T ss_pred CCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCC
Confidence 7776 6889999999999999885 99999999973 2456777887653
No 98
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.21 E-value=5.7e-05 Score=91.69 Aligned_cols=72 Identities=15% Similarity=0.125 Sum_probs=54.3
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
..+++-|.+++. .....++|.|+.|||||.+.+--+...+.... .....+|+|++|..+|.++...+..+..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 357899999997 34678999999999999885555554444321 1234799999999999999998887653
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.19 E-value=3.9e-05 Score=88.91 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHcCCCCCcHHHHHHHHHHhcC----C-CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHH
Q 002040 483 RKLNYEKPMPIQAQALPVIMSG----R-DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (976)
Q Consensus 483 ~~~~~~~p~~~Q~~~i~~il~g----~-d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 557 (976)
..+.|..|++-|.+++..++.. . .++|.|+.|||||.+ +..++.++.... ...+++++||...|..+.
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~l-l~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTL-TKFIIEALISTG------ETGIILAAPTHAAKKILS 91 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHH-HHHHHHHHHHTT------CCCEEEEESSHHHHHHHH
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHH-HHHHHHHHHhcC------CceEEEecCcHHHHHHHH
Confidence 3466788999999999977532 3 899999999999976 455555555431 136899999988876654
Q ss_pred HH
Q 002040 558 SD 559 (976)
Q Consensus 558 ~~ 559 (976)
..
T Consensus 92 ~~ 93 (459)
T 3upu_A 92 KL 93 (459)
T ss_dssp HH
T ss_pred hh
Confidence 43
No 100
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=5.8e-05 Score=92.90 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHH
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKF 563 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~ 563 (976)
+..+++.|.+|+..++.+.-++|.||.|+|||.+.. .++.++... .+.++||++||...|.++...+...
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~-~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSA-TIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHH-HHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH-HHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 456889999999999987778999999999998743 344444321 2457999999999999988887663
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.15 E-value=0.00014 Score=89.44 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=54.9
Q ss_pred CCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 487 YEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 487 ~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
...+++.|..|+..++.+.-++|.|++|+|||.+ +..++.++... .+..+|+++||...|.++...+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~t-i~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT-SATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHH-HHHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHH-HHHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHH
Confidence 3568899999999999887889999999999987 44455555432 256799999999999888777654
No 102
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.03 E-value=1.1e-05 Score=95.82 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=81.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
.+++.|..++..++.+..+++.|+.|+|||++ +..++..+.. .+..+++++||...|..+...+ +
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~-i~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~-------~ 253 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTT-TKAVADLAES-------LGLEVGLCAPTGKAARRLGEVT-------G 253 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH-------T
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHH-HHHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh-------c
Confidence 57899999999999999999999999999976 3444444443 2567899999998887664432 2
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCC
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPD 648 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~ 648 (976)
.....+. .+.. +.. + .+ .. .......+++||||||+.+. ...+..++..++..
T Consensus 254 ~~a~Tih----------~ll~---~~~-~--~~----~~---~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~ 306 (574)
T 3e1s_A 254 RTASTVH----------RLLG---YGP-Q--GF----RH---NHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPG 306 (574)
T ss_dssp SCEEEHH----------HHTT---EET-T--EE----SC---SSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTT
T ss_pred ccHHHHH----------HHHc---CCc-c--hh----hh---hhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCC
Confidence 2111110 1100 000 0 00 00 01233467899999999643 34666777777777
Q ss_pred CcEEEEecc
Q 002040 649 RQTVLFSAT 657 (976)
Q Consensus 649 ~q~i~~SAT 657 (976)
.++|++.-+
T Consensus 307 ~~lilvGD~ 315 (574)
T 3e1s_A 307 ARVLLVGDT 315 (574)
T ss_dssp CEEEEEECT
T ss_pred CEEEEEecc
Confidence 777776543
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.45 E-value=0.00088 Score=81.49 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
.+++-|.+++.. .+..++|.|..|||||.+.+--+...+.... .....+|+|+.|+.+|.++...+.....
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 478999999875 3678899999999999886555555554311 1234799999999999999988887643
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.34 E-value=0.0058 Score=74.73 Aligned_cols=80 Identities=14% Similarity=0.062 Sum_probs=58.1
Q ss_pred CCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh-
Q 002040 488 EKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV- 566 (976)
Q Consensus 488 ~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~- 566 (976)
..+++-|.+|+.. ....++|.|..|||||.+.+--+...+.... .....+|+|+.|+.+|.++.+.+..+...
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 3588999999875 3568999999999999986555555554321 12347999999999999999888876532
Q ss_pred -cCcEEEE
Q 002040 567 -MGVRCVP 573 (976)
Q Consensus 567 -~~~~~~~ 573 (976)
.++.+..
T Consensus 84 ~~~~~v~T 91 (724)
T 1pjr_A 84 AEDVWIST 91 (724)
T ss_dssp GTTSEEEE
T ss_pred ccCcEEee
Confidence 2445544
No 105
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.32 E-value=0.0018 Score=72.23 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=58.3
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
.|+|+|...+..+...+-+++..+-+.|||.+++..++..+... .+..+++++||...|..++..+..+....+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 58899999998776556688899999999998776666544432 356799999999999988888888776543
No 106
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.69 E-value=0.013 Score=69.70 Aligned_cols=74 Identities=12% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
.|+|+|...+..+...+-+++.++-|+|||.+++..++..+... .+..+++++|+...|..++..++.++..++
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 58899999998775567789999999999998766665555432 255799999999999999988888776554
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.64 E-value=0.0068 Score=60.51 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=27.7
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
.|.-.++.|++|+|||+.++-.+..+.. .+.+++++.|.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~--------~g~~v~~~~~~ 40 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKL--------GKKKVAVFKPK 40 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHH--------TTCEEEEEEEC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEeec
Confidence 4566789999999999875544444432 24578888887
No 108
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.63 E-value=0.0061 Score=60.42 Aligned_cols=31 Identities=32% Similarity=0.253 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHh---------cCCCEEEEcCCCCchHHHH
Q 002040 491 MPIQAQALPVIM---------SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 491 ~~~Q~~~i~~il---------~g~d~i~~a~TGsGKT~~~ 521 (976)
.+.|..++..+. .|..++++||+|+|||+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 355666655543 4678999999999999763
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.53 E-value=0.0055 Score=61.48 Aligned_cols=38 Identities=18% Similarity=0.103 Sum_probs=27.8
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
|+-.++.|++|||||+.++-.+.++.. .+.+|+|+.|.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~--------~g~kV~v~k~~ 45 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKI--------AKQKIQVFKPE 45 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH--------TTCCEEEEEEC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEec
Confidence 455788899999999876655554432 35678999987
No 110
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.15 E-value=0.022 Score=64.47 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=71.6
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc-c-CHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA-P-TRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQ 582 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~-P-tr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~ 582 (976)
.-++++|++|+|||+++...+ .++.. .|.+|++++ + .+.-+ +..+..++...++.+.....+..
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA-~~l~~-------~G~kVllv~~D~~r~~a---~eqL~~~~~~~gv~~~~~~~~~d--- 163 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLA-YFYKK-------RGYKVGLVAADVYRPAA---YDQLLQLGNQIGVQVYGEPNNQN--- 163 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHH-HHHHH-------TTCCEEEEEECCSCHHH---HHHHHHHHHTTTCCEECCTTCSC---
T ss_pred eEEEEECCCCCCHHHHHHHHH-HHHHH-------cCCeEEEEecCccchhH---HHHHHHHHHhcCCceeeccccCC---
Confidence 347777999999998744333 33332 244555544 3 33333 24455555556665543322221
Q ss_pred HHHHHhcCCeEEEeCchhHH-HHHHhcCCcccccCCceEEEecCccccc---ccCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 583 QISELKRGTEIVVCTPGRMI-DILCTSGGKITNLRRVTYLVMDEADRMF---DMGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 583 ~~~~l~~~~~Iiv~Tp~~L~-~~l~~~~~~~~~l~~~~~vVlDEah~~~---~~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
|..+. ..+.. .....+++||||.+-++. +..+...+..++..+.++.-+++++|+.
T Consensus 164 ---------------p~~i~~~al~~-----a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 164 ---------------PIEIAKKGVDI-----FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASI 223 (433)
T ss_dssp ---------------HHHHHHHHHHH-----TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGG
T ss_pred ---------------HHHHHHHHHHH-----HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCcc
Confidence 11111 12211 123468999999998643 2334556666777777777778888886
Q ss_pred cHHHHHHHHH
Q 002040 659 PRQVEILARK 668 (976)
Q Consensus 659 ~~~~~~l~~~ 668 (976)
.......+..
T Consensus 224 gq~a~~~a~~ 233 (433)
T 3kl4_A 224 GQKAYDLASR 233 (433)
T ss_dssp GGGGHHHHHH
T ss_pred chHHHHHHHH
Confidence 5444444433
No 111
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.04 E-value=0.0098 Score=60.30 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr 550 (976)
|+-.++.|++|+|||+.++-.+.++.. .+.+|+|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~--------~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF--------AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCEEEEEEecc
Confidence 344568899999999886666665543 356799999874
No 112
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.00 E-value=0.018 Score=59.15 Aligned_cols=40 Identities=18% Similarity=0.052 Sum_probs=27.8
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr 550 (976)
.|.-+++.|++|+|||++++-.+..... .+.+|+|+.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~--------~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY--------ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH--------TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh--------cCCEEEEEEecc
Confidence 3456788899999999876555554432 255788887753
No 113
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.74 E-value=0.0089 Score=67.49 Aligned_cols=107 Identities=21% Similarity=0.215 Sum_probs=60.1
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS 585 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~ 585 (976)
-.++.|+.|+|||..+. .++ . ....+|++||++++..|.+.+... +.
T Consensus 163 v~~I~G~aGsGKTt~I~-~~~----~--------~~~~lVlTpT~~aa~~l~~kl~~~----~~---------------- 209 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL-SRV----N--------FEEDLILVPGRQAAEMIRRRANAS----GI---------------- 209 (446)
T ss_dssp EEEEEECTTSCHHHHHH-HHC----C--------TTTCEEEESCHHHHHHHHHHHTTT----SC----------------
T ss_pred EEEEEcCCCCCHHHHHH-HHh----c--------cCCeEEEeCCHHHHHHHHHHhhhc----Cc----------------
Confidence 36788999999998632 221 1 024599999999998776665321 10
Q ss_pred HHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 586 ELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 586 ~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
.....+-|.|...++. +.. . .....+++||||||- |++.+ .+..++..+++ .++|++.-+
T Consensus 210 --~~~~~~~V~T~dsfL~---~~~-~-~~~~~~d~liiDE~s-m~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 210 --IVATKDNVRTVDSFLM---NYG-K-GARCQFKRLFIDEGL-MLHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp --CCCCTTTEEEHHHHHH---TTT-S-SCCCCCSEEEEETGG-GSCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred --cccccceEEEeHHhhc---CCC-C-CCCCcCCEEEEeCcc-cCCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 0112334677665432 111 1 111247899999998 44333 33334444433 555555544
No 114
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.73 E-value=0.012 Score=59.66 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=27.8
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr 550 (976)
.|.-.++.|++|+|||+.++-.+.+... .+.+++|+.|..
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~--------~g~kvli~kp~~ 66 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIY--------AKQKVVVFKPAI 66 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH--------TTCCEEEEEEC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH--------cCCceEEEEecc
Confidence 3556788899999999875555544432 256789999964
No 115
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.66 E-value=0.056 Score=61.15 Aligned_cols=129 Identities=16% Similarity=0.121 Sum_probs=68.6
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc--cCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~--Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 583 (976)
-++++|++|+|||+++.- +..++.. .|.+|++++ |.+.-+ +..+..++...++.+.....+......
T Consensus 102 vIlivG~~G~GKTTt~~k-LA~~l~~-------~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~~dp~~i 170 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAK-LARYFQK-------RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQEKDAIKL 170 (443)
T ss_dssp EEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTCCCHHHH
T ss_pred EEEEECcCCCCHHHHHHH-HHHHHHH-------CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCCCCHHHH
Confidence 478889999999987443 3333333 244566555 444443 345556666677766544333221111
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCccccccc-CCchHHHHHHHhcCCCCcEEEEeccCcHHH
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDM-GFEPQITRIVQNIRPDRQTVLFSATFPRQV 662 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~-~f~~~i~~il~~~~~~~q~i~~SAT~~~~~ 662 (976)
+...+.. .....+++||||.+=++... .....+..+.....++.-++++.||.....
T Consensus 171 -----------------~~~al~~-----a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a 228 (443)
T 3dm5_A 171 -----------------AKEGVDY-----FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA 228 (443)
T ss_dssp -----------------HHHHHHH-----HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH
T ss_pred -----------------HHHHHHH-----HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH
Confidence 0111111 11124788999988643211 122334455556667766777888865444
Q ss_pred HHHHH
Q 002040 663 EILAR 667 (976)
Q Consensus 663 ~~l~~ 667 (976)
...+.
T Consensus 229 ~~~a~ 233 (443)
T 3dm5_A 229 YNQAL 233 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 116
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.061 Score=58.31 Aligned_cols=27 Identities=11% Similarity=-0.038 Sum_probs=20.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhc
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKD 531 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~ 531 (976)
+.++++.|++|+|||++ +-.++..+..
T Consensus 45 ~~~lli~GpPGTGKT~~-v~~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQL-VNDVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHH-HHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHH-HHHHHHHHHH
Confidence 45799999999999976 4455555543
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.61 E-value=0.021 Score=56.99 Aligned_cols=39 Identities=15% Similarity=0.066 Sum_probs=28.3
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
.++=.++.|++|||||+..+-.+-++... +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc
Confidence 35667888999999997655555555443 4578999886
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.60 E-value=0.0081 Score=57.68 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.+..++++|++|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 578899999999999975
No 119
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.53 E-value=0.084 Score=53.01 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=18.5
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
..++++|++|+|||..+ ..+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHH
Confidence 68999999999999863 34444443
No 120
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.52 E-value=0.045 Score=59.33 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.3
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+.+++++|++|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997644
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.51 E-value=0.046 Score=55.91 Aligned_cols=40 Identities=15% Similarity=0.087 Sum_probs=30.0
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr 550 (976)
.|+-.++.|++|+|||+.++-.+.++.. .|.+++|+.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~--------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI--------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT--------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH--------CCCeEEEEeecC
Confidence 4566788899999999886666665533 366789998864
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.49 E-value=0.024 Score=55.76 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
...++++|++|+|||..+. .+...+
T Consensus 43 ~~~vll~G~~G~GKT~la~-~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE-GLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH-HHHHHH
T ss_pred CCceEEECCCCCCHHHHHH-HHHHHH
Confidence 4579999999999997633 334443
No 123
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.45 E-value=0.047 Score=59.58 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=18.2
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
+..++++||+|+|||..+ -.+...+
T Consensus 37 ~~~lll~G~~GtGKT~la-~~i~~~~ 61 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL-QAAGNEA 61 (324)
T ss_dssp CSSEEEECSSSSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHH
Confidence 468999999999999753 3344444
No 124
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=95.36 E-value=0.023 Score=67.39 Aligned_cols=113 Identities=22% Similarity=0.336 Sum_probs=74.3
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhh
Q 002040 489 KPMPIQAQALPVIMS--GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKV 566 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~--g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~ 566 (976)
.+|..|.+++..++. ....++.|+-|.|||.+..+.+. .+.. .++|.+|+..-+..+. .|+..
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a-~~~~----------~~~vtAP~~~a~~~l~----~~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLIS-RIAG----------RAIVTAPAKASTDVLA----QFAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHH-HSSS----------CEEEECSSCCSCHHHH----HHHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHH-HHHh----------CcEEECCCHHHHHHHH----HHhhC
Confidence 689999999998886 33478889999999976554443 2221 3699999987665332 22211
Q ss_pred cCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCchHHHHHHHhcC
Q 002040 567 MGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 646 (976)
Q Consensus 567 ~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~ 646 (976)
.|-+..|..+.. .+..+++||||||=.+. .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~----------~~~~~dlliVDEAAaIp----~pll~~ll~~~- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA----------SDEQADWLVVDEAAAIP----APLLHQLVSRF- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH----------SCCCCSEEEEETGGGSC----HHHHHHHHTTS-
T ss_pred -------------------------CeEEeCchhhhh----------CcccCCEEEEEchhcCC----HHHHHHHHhhC-
Confidence 144556654321 23458999999998653 55666666533
Q ss_pred CCCcEEEEeccCc
Q 002040 647 PDRQTVLFSATFP 659 (976)
Q Consensus 647 ~~~q~i~~SAT~~ 659 (976)
..|+||.|+.
T Consensus 280 ---~~v~~~tTv~ 289 (671)
T 2zpa_A 280 ---PRTLLTTTVQ 289 (671)
T ss_dssp ---SEEEEEEEBS
T ss_pred ---CeEEEEecCC
Confidence 3588888864
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.21 E-value=0.22 Score=48.75 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=18.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
...++++|++|+|||..+ ..+...+
T Consensus 43 ~~~~ll~G~~G~GKT~l~-~~~~~~~ 67 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV-EGLAQRI 67 (195)
T ss_dssp SCEEEEECCTTSCHHHHH-HHHHHHH
T ss_pred CCceEEECCCCCCHHHHH-HHHHHHH
Confidence 357999999999999763 3344444
No 126
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.19 E-value=0.035 Score=71.98 Aligned_cols=128 Identities=18% Similarity=0.112 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcC
Q 002040 489 KPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMG 568 (976)
Q Consensus 489 ~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~ 568 (976)
.+|+-|.++|... +.+++|.|..|||||.+.+--++..+..... ......+|+|++|...|..+.+.+...+....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~ 85 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALEKEL 85 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHHHHh
Confidence 5789999998753 7899999999999999877667776665311 11234799999999999999988877543210
Q ss_pred cEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 569 VRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 569 ~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
.. .... ......+..-..+-|+|...|...+.........+. -.+-|+|+..
T Consensus 86 ~~-----~~~~-~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~-~~f~~~d~~~ 137 (1232)
T 3u4q_A 86 VQ-----RPGS-LHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLD-PGFRIADQTE 137 (1232)
T ss_dssp HH-----STTC-HHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCC-TTCEECCHHH
T ss_pred hc-----Ccch-HHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCC-CCCeeCCHHH
Confidence 00 0111 111111222245688998888665554322222222 1233778765
No 127
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.90 E-value=0.19 Score=53.16 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=15.1
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
..++++||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998643
No 128
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.018 Score=65.08 Aligned_cols=55 Identities=22% Similarity=0.366 Sum_probs=35.8
Q ss_pred CCcccccccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 463 PKPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
..|-.+|.+.+-...+.+.|.. +.+..|.-++...++ -.+.+|+.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 4567889999888777776653 222233333222211 246899999999999975
No 129
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.77 E-value=0.059 Score=59.17 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=25.8
Q ss_pred cHHHHHHHHHHh----cCC---CEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 491 MPIQAQALPVIM----SGR---DCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 491 ~~~Q~~~i~~il----~g~---d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
+|+|..++..+. +|+ .+|+.||.|+|||..+. .+...+.
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~-~la~~l~ 49 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY-ALSRYLL 49 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH-HHHHHHT
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH-HHHHHHh
Confidence 467776665543 443 38999999999997644 4444443
No 130
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.76 E-value=0.021 Score=61.00 Aligned_cols=55 Identities=22% Similarity=0.369 Sum_probs=31.2
Q ss_pred CcccccccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHH--hcCCCEEEEcCCCCchHHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQ-AQALPVI--MSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q-~~~i~~i--l~g~d~i~~a~TGsGKT~~~ 521 (976)
.|-.+|.++.-....+..|...-. .+.+ .+.+..+ .....+++.||+|+|||+.+
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 344568887766666665543210 0110 1111111 24567999999999999753
No 131
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.73 E-value=0.099 Score=59.69 Aligned_cols=18 Identities=22% Similarity=0.087 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+..+++.|++|+|||..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp SCCEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999763
No 132
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.027 Score=62.77 Aligned_cols=53 Identities=23% Similarity=0.365 Sum_probs=31.8
Q ss_pred cccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
|-.+|.+.|--....+.|... .+..|--++.-.+ .-.+.+|+.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 457888887666666655531 1222222221111 1247899999999999975
No 133
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.54 E-value=0.098 Score=63.92 Aligned_cols=94 Identities=18% Similarity=0.230 Sum_probs=72.2
Q ss_pred chHHH-HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC
Q 002040 698 SDRFL-RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (976)
Q Consensus 698 ~~k~~-~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~ 772 (976)
+.|-. .++-++.....+.++||.+|+..-+..++..|... ++.+..+||+++..++..++..+.+|.++|||+|.
T Consensus 400 SGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~ 479 (780)
T 1gm5_A 400 SGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTH 479 (780)
T ss_dssp SSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECT
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 44433 33333333335679999999999888887777653 79999999999999999999999999999999997
Q ss_pred c-ccccCCCCCCcEEEEeCC
Q 002040 773 V-AARGLDVKELELVINFDA 791 (976)
Q Consensus 773 v-~~~GlDi~~v~~VI~~d~ 791 (976)
. +...+.+.++.+||.=..
T Consensus 480 ~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 480 ALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp THHHHCCCCSCCCEEEEESC
T ss_pred HHHhhhhhccCCceEEeccc
Confidence 3 345678888988885333
No 134
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.50 E-value=0.26 Score=49.08 Aligned_cols=137 Identities=13% Similarity=0.057 Sum_probs=71.9
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCC----
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSG---- 579 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~---- 579 (976)
...+++...+|.|||.+++-.++..+- .|.+|+|+.-...- .-+.+. .++..+++.+..+--|-.
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g--------~G~rV~~vQF~Kg~--~~~gE~-~~l~~L~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVG--------HGKNVGVVQFIKGT--WPNGER-NLLEPHGVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHH--------TTCCEEEEESSCCS--SCCHHH-HHHGGGTCEEEECCTTCCCCGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEEEeeCCC--CCccHH-HHHHhCCcEEEEcccccccCCC
Confidence 347888899999999998777776654 36778888322110 000011 111222333332211110
Q ss_pred -hHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccccCCc--hHHHHHHHhcCCCCcEEEEec
Q 002040 580 -VAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFDMGFE--PQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 580 -~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~~~f~--~~i~~il~~~~~~~q~i~~SA 656 (976)
........ -..| ..+.. ...-..+++|||||+-..+..++. +.+..++...+....+|+++-
T Consensus 97 ~~~~~~~~a----------~~~l-~~a~~----~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 97 NREADTAAC----------MAVW-QHGKR----MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp GHHHHHHHH----------HHHH-HHHHH----HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CcHHHHHHH----------HHHH-HHHHH----HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 00000000 0111 11111 011256899999999866666644 446667776666666777777
Q ss_pred cCcHHHHHHH
Q 002040 657 TFPRQVEILA 666 (976)
Q Consensus 657 T~~~~~~~l~ 666 (976)
.+|+.+..++
T Consensus 162 ~ap~~l~e~A 171 (196)
T 1g5t_A 162 GCHRDILDLA 171 (196)
T ss_dssp SCCHHHHHHC
T ss_pred CCcHHHHHhC
Confidence 7777765554
No 135
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.36 E-value=0.057 Score=58.28 Aligned_cols=54 Identities=20% Similarity=0.384 Sum_probs=30.3
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHH-HHHHH--HhcCCCEEEEcCCCCchHHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQA-QALPV--IMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~-~~i~~--il~g~d~i~~a~TGsGKT~~~ 521 (976)
|-.+|.+++-...+...|...-. .|+.. +.+.. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 44678888766666655543100 00000 00011 123567999999999999753
No 136
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.22 E-value=0.11 Score=49.35 Aligned_cols=20 Identities=10% Similarity=0.061 Sum_probs=17.1
Q ss_pred hcCCCEEEEcCCCCchHHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~ 521 (976)
..+.++++.|++|+|||+.+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 46678999999999999754
No 137
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.89 E-value=0.33 Score=48.78 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=24.1
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEec
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SA 656 (976)
....+|||||+|.+... ....+..++........+|++|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 34679999999986432 23345555555555555555443
No 138
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.043 Score=62.10 Aligned_cols=54 Identities=20% Similarity=0.291 Sum_probs=30.7
Q ss_pred CcccccccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
.|-.+|.+.+-.....+.|.. +.+..|--++.-.+ .-.+.+|+.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 455678888766665555442 11111111111111 1236899999999999975
No 139
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.84 E-value=0.16 Score=56.51 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=17.4
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
..+++.|++|+|||..+ ..+...+
T Consensus 46 ~~vll~G~~G~GKT~la-~~l~~~~ 69 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS-KYIFNEI 69 (384)
T ss_dssp CEEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 46999999999999763 3344443
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.83 E-value=0.16 Score=56.47 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+..++++||+|+|||..+
T Consensus 44 ~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCEEECBCTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 467999999999999763
No 141
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.78 E-value=0.089 Score=54.12 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+..++++|++|+|||..+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3678999999999999753
No 142
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.78 E-value=0.21 Score=54.27 Aligned_cols=51 Identities=16% Similarity=0.352 Sum_probs=30.1
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCCEEEEcCCCCchHHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il-----~g~d~i~~a~TGsGKT~~~ 521 (976)
|-.+|.++.-...+.+.|...=. .|. ..|.++ ..+.+|+.||+|+|||+.+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 44568888777777666543210 000 011111 1356999999999999763
No 143
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.64 E-value=0.065 Score=60.01 Aligned_cols=54 Identities=20% Similarity=0.362 Sum_probs=32.0
Q ss_pred CcccccccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
.|-.+|.+.|=-..+.+.|.. +.+..|--++...++ -.+.+|+.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 455688888766655555443 222223222222111 236799999999999975
No 144
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.62 E-value=0.055 Score=61.13 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=31.0
Q ss_pred CcccccccCCCCHHHHHHHHH---cCCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRK---LNYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~---~~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
.|-.+|.+.|--..+.+.|.. +.+..|--++...+ .-.+.+|+.||+|+|||+.
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 455788888766666655443 11111111111111 1236799999999999975
No 145
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.59 E-value=0.058 Score=58.25 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
.++++.||+|+|||..+
T Consensus 68 ~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999764
No 146
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.30 E-value=0.092 Score=57.17 Aligned_cols=40 Identities=15% Similarity=0.197 Sum_probs=24.4
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEec
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SA 656 (976)
...+|||||+|.+........+..++........+|+.|.
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 5789999999987512223345555555555555555443
No 147
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.15 E-value=0.26 Score=55.59 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=64.5
Q ss_pred hcCCcEEEEecCHHHHHHHHHHHHH---CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc----ccCCCCCCc
Q 002040 712 YEKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA----RGLDVKELE 784 (976)
Q Consensus 712 ~~~~kvLIF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~----~GlDi~~v~ 784 (976)
..++++||.+|++.-+..++..|.. .++.+..+||+.+..++...+..+..|...|||+|+-.- .-+....+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3567899999999999999999988 588999999999999988889999999999999996211 125566788
Q ss_pred EEEE
Q 002040 785 LVIN 788 (976)
Q Consensus 785 ~VI~ 788 (976)
+||.
T Consensus 142 ~iVi 145 (414)
T 3oiy_A 142 FVFV 145 (414)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 148
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.14 E-value=1 Score=45.75 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=16.6
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
.+++.|++|+|||..+ ..+...+
T Consensus 47 ~~ll~G~~G~GKT~l~-~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA-RLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5899999999999753 3334443
No 149
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.09 E-value=0.28 Score=54.85 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
.+.+|+.|++|+|||+++
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999753
No 150
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.96 E-value=0.13 Score=57.34 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=17.0
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
.+++.|++|+|||..+ ..++..+
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 6999999999999763 3344443
No 151
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.96 E-value=0.17 Score=55.79 Aligned_cols=42 Identities=10% Similarity=0.317 Sum_probs=27.2
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
....+|||||+|. ++......+..++........+|+.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 4578999999998 44444455666677666655555555544
No 152
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.68 E-value=0.23 Score=54.27 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
..+++.|++|+|||+.+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 57999999999999753
No 153
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.1 Score=59.07 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=33.3
Q ss_pred CcccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
.|-.+|.+.+-...+.+.|... .+..|--++.-. +.-.+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 4567899988777777766542 111111111111 11246899999999999975
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.50 E-value=0.68 Score=49.37 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
...+++.||+|+|||+.+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 568999999999999753
No 155
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.48 E-value=0.94 Score=49.14 Aligned_cols=51 Identities=20% Similarity=0.387 Sum_probs=29.9
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh-----cCCCEEEEcCCCCchHHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM-----SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il-----~g~d~i~~a~TGsGKT~~~ 521 (976)
|-.+|.+++-...+.+.|...-. .|.+ .|.++ ..+.+|+.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 44678888777766665542100 0000 01111 1257999999999999753
No 156
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.27 E-value=0.21 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=18.2
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
+..+++.|++|+|||..+ ..++..+
T Consensus 45 ~~~vli~G~~G~GKTtl~-~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV-KFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHH
Confidence 467999999999999753 3344443
No 157
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.11 E-value=0.19 Score=55.63 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
.+.+|+.||+|+|||+.+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 357999999999999863
No 158
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=91.54 E-value=1.4 Score=45.68 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999753
No 159
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.54 E-value=1.1 Score=47.91 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=26.0
Q ss_pred CCceEEEecCccccc-ccCCchHHHHHHHhcCCCCcEEEEeccCcHH
Q 002040 616 RRVTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQ 661 (976)
Q Consensus 616 ~~~~~vVlDEah~~~-~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~ 661 (976)
..+++||||++-.+. +......+..+...+.++.-++++.++....
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~ 225 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 225 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHH
Confidence 468999999995432 1112233444445555655556677765433
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.52 E-value=0.62 Score=53.29 Aligned_cols=39 Identities=15% Similarity=-0.029 Sum_probs=24.3
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
.|.-++|.|++|+|||+.++..+....... |..|+|+..
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-------g~~Vl~~s~ 240 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-------NENVAIFSL 240 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-------SCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-------CCcEEEEEC
Confidence 345688889999999976444444333221 335677653
No 161
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.26 E-value=0.47 Score=51.23 Aligned_cols=39 Identities=15% Similarity=0.255 Sum_probs=23.4
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
....+|||||+|.+... ....+..++...+....+|+++
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 35689999999987432 2334455555554555455443
No 162
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.06 E-value=0.45 Score=54.24 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
..+|++||+|+|||+.+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999753
No 163
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.06 E-value=1.5 Score=48.26 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=17.6
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
+.+|+.||+|+|||..+ ..+...+
T Consensus 71 ~~vLl~GppGtGKT~la-~~la~~l 94 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIA-MGMAQAL 94 (368)
T ss_dssp CEEEEEESTTSSHHHHH-HHHHHHH
T ss_pred CEEEEECCCCCCHHHHH-HHHHHHh
Confidence 57999999999999863 3344443
No 164
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.90 E-value=1.4 Score=48.51 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=16.4
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
.+++.|+.|+|||..+ ..+...+
T Consensus 40 ~~ll~G~~G~GKT~la-~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA-RLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 3789999999999764 3333443
No 165
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.61 E-value=1.6 Score=43.30 Aligned_cols=71 Identities=21% Similarity=0.378 Sum_probs=51.4
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
++++||.|+++..+..++..+.. .|+.+..++|+.+..+.. ..+.. ...|+|+| +.+... .++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~~G----ldi 120 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL----KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVASKG----LDF 120 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHHTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----CchhcC----CCc
Confidence 45799999999999888777765 478899999998765543 33333 46899999 233332 577
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 121 ~~v~~VI~ 128 (191)
T 2p6n_A 121 PAIQHVIN 128 (191)
T ss_dssp CCCSEEEE
T ss_pred ccCCEEEE
Confidence 77888776
No 166
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.34 E-value=1.1 Score=46.54 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
...+++.||+|+|||+.+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457899999999999753
No 167
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.33 E-value=1.1 Score=47.91 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
....+++.||+|+|||..+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3578999999999999753
No 168
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.03 E-value=0.5 Score=51.71 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=24.3
Q ss_pred CCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEec
Q 002040 616 RRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSA 656 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SA 656 (976)
....+|||||+|.+... ....+..++........+|+++.
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEeC
Confidence 35689999999987532 22345555665555555555443
No 169
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.88 E-value=0.75 Score=46.75 Aligned_cols=22 Identities=23% Similarity=0.135 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCCchHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~ 524 (976)
.|.-+++.|++|+|||+.+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l 43 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHF 43 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 4567888999999999764433
No 170
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=89.73 E-value=0.57 Score=59.61 Aligned_cols=77 Identities=12% Similarity=0.173 Sum_probs=64.4
Q ss_pred hcCCcEEEEecCHHHHHHHHHHHHH---CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCccc----ccCCCCCCc
Q 002040 712 YEKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVAA----RGLDVKELE 784 (976)
Q Consensus 712 ~~~~kvLIF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~~----~GlDi~~v~ 784 (976)
..+.++||.+|++.-+.+++..|.. .++.+..+||+++..++...+..+..|..+|||+|+-.- .-+++.++.
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~ 198 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 198 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcC
Confidence 3466899999999999999999988 467899999999998888899999999999999996211 125667888
Q ss_pred EEEE
Q 002040 785 LVIN 788 (976)
Q Consensus 785 ~VI~ 788 (976)
+||.
T Consensus 199 ~lVi 202 (1104)
T 4ddu_A 199 FVFV 202 (1104)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8885
No 171
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.71 E-value=0.67 Score=50.04 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
...+++.|++|+|||+.+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999753
No 172
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.70 E-value=3 Score=44.74 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCchHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l 523 (976)
.-++++|++|+|||+.+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 4577889999999986443
No 173
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.64 E-value=2.1 Score=46.51 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=31.4
Q ss_pred ceEEEecCccccc-ccCCchHHHHHHHhcCCCCcEEEEeccCcHHHHHHHHHH
Q 002040 618 VTYLVMDEADRMF-DMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKV 669 (976)
Q Consensus 618 ~~~vVlDEah~~~-~~~f~~~i~~il~~~~~~~q~i~~SAT~~~~~~~l~~~~ 669 (976)
+.++++|-+-++. ...+...+..+...+.++..++++.+|....+...+..+
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~ 264 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQF 264 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHH
Confidence 5677788776532 122334455556666777778888887766555555444
No 174
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=89.55 E-value=0.48 Score=54.04 Aligned_cols=38 Identities=21% Similarity=0.027 Sum_probs=23.7
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
|.-++|+|++|+|||..++..+...+.. .+..|+++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-------~g~~vl~~sl 237 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-------EGVGVGIYSL 237 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-------TCCCEEEEES
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEEC
Confidence 4457888999999997544444443332 1345677654
No 175
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.53 E-value=1.4 Score=45.20 Aligned_cols=26 Identities=15% Similarity=0.075 Sum_probs=18.8
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRH 528 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~ 528 (976)
.|.-+++.|++|+|||+.++..+...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999998644444433
No 176
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=89.36 E-value=0.89 Score=51.77 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.3
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
.+.+|+.||+|+|||+.+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999753
No 177
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=89.31 E-value=0.96 Score=57.91 Aligned_cols=94 Identities=9% Similarity=0.123 Sum_probs=71.6
Q ss_pred cCcchHHHHHH-HHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEE
Q 002040 695 RPESDRFLRLL-ELLGEWYEKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (976)
Q Consensus 695 ~~~~~k~~~l~-~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 769 (976)
.....|-...+ .++.....+.++||.||+..-+.+.+..|... ++.+..++|..+..++..++..+..|.++|+|
T Consensus 632 ~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV 711 (1151)
T 2eyq_A 632 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 711 (1151)
T ss_dssp CCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 33445543332 23333334569999999999998888887643 67889999999999999999999999999999
Q ss_pred ecC-cccccCCCCCCcEEEE
Q 002040 770 ATS-VAARGLDVKELELVIN 788 (976)
Q Consensus 770 aT~-v~~~GlDi~~v~~VI~ 788 (976)
+|. .+...+.+.++.+||.
T Consensus 712 ~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 712 GTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp ECTHHHHSCCCCSSEEEEEE
T ss_pred ECHHHHhCCccccccceEEE
Confidence 996 4455678888888885
No 178
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.20 E-value=0.66 Score=47.85 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCCCchHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~i 525 (976)
.|.-+.++||+|+|||+.+.+.+
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 56778999999999998644333
No 179
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.19 E-value=0.72 Score=53.69 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=25.1
Q ss_pred CCceEEEecCcccccccC--CchHHHHHHHhcCCCCcEEEEeccC
Q 002040 616 RRVTYLVMDEADRMFDMG--FEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 616 ~~~~~vVlDEah~~~~~~--f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
....+|||||+|.|.... +...+..++.. ....+|+++++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345799999999876432 22344444443 344577777764
No 180
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=88.91 E-value=1.5 Score=47.18 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=22.9
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
...+.+|||||||.|.... ...+..++..-++...+|+++
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEEE
Confidence 3467899999999875332 223444555443344344433
No 181
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=88.91 E-value=1.1 Score=43.10 Aligned_cols=72 Identities=19% Similarity=0.380 Sum_probs=51.2
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||.|+++..+..++..+.. .|+.+..++|+.+..+.. ..+.. ...|+|+|. .+..+ .++
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----ld~ 101 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDD----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAARG----IDI 101 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTTT----CCC
T ss_pred CCcEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----Cch
Confidence 45789999999998888777765 578899999998766543 33333 468999993 22221 567
Q ss_pred CCceEEEec
Q 002040 616 RRVTYLVMD 624 (976)
Q Consensus 616 ~~~~~vVlD 624 (976)
..+.+||.-
T Consensus 102 ~~~~~Vi~~ 110 (163)
T 2hjv_A 102 ENISLVINY 110 (163)
T ss_dssp SCCSEEEES
T ss_pred hcCCEEEEe
Confidence 778888763
No 182
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.75 E-value=2.1 Score=47.81 Aligned_cols=19 Identities=16% Similarity=0.017 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
|.-++|+|++|+|||+.+.
T Consensus 178 Gei~~I~G~sGsGKTTLl~ 196 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCH 196 (400)
T ss_dssp TSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHH
Confidence 3568899999999997644
No 183
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=88.74 E-value=2.5 Score=47.58 Aligned_cols=20 Identities=30% Similarity=0.149 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l 523 (976)
+.-+++++++|+|||+.+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~ 117 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAK 117 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577789999999986443
No 184
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.61 E-value=0.36 Score=53.32 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=15.5
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
.+.+|++|++|+|||+.+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999763
No 185
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=88.48 E-value=1.5 Score=46.31 Aligned_cols=26 Identities=19% Similarity=0.240 Sum_probs=19.5
Q ss_pred HhcCCCEEEEcCCCCchHHHHHHHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~~l~il 526 (976)
+..|.-++|+|++|+|||+.+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34677889999999999986544443
No 186
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.41 E-value=0.5 Score=54.50 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=27.5
Q ss_pred ceEEEecCcccccccC----------CchHHHHHHHhcCCCCcEEEEeccCcH
Q 002040 618 VTYLVMDEADRMFDMG----------FEPQITRIVQNIRPDRQTVLFSATFPR 660 (976)
Q Consensus 618 ~~~vVlDEah~~~~~~----------f~~~i~~il~~~~~~~q~i~~SAT~~~ 660 (976)
.++|+|||+|.+.... ....+..++..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 4689999999876431 112344555555566677887777544
No 187
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.25 E-value=0.81 Score=49.20 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=23.0
Q ss_pred CceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 617 RVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 617 ~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
...+|||||+|.+.... ...+..++...+....+|++|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 36799999999875322 233445555554555555544
No 188
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.24 E-value=0.36 Score=51.68 Aligned_cols=16 Identities=19% Similarity=0.009 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
..+++.||+|+|||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4588889999999975
No 189
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=88.05 E-value=0.42 Score=52.18 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=24.4
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
.|.-+|+.|++|+|||..++..+. ++.. .+..|+|+..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~-~~a~-------~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVL-SALN-------DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHH-HHHH-------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEeC
Confidence 345578889999999975444444 3332 2456777764
No 190
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.95 E-value=0.92 Score=56.32 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
..+++++|++|+|||..+
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 357999999999999753
No 191
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=87.72 E-value=0.43 Score=54.66 Aligned_cols=17 Identities=35% Similarity=0.479 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
+.++++||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999853
No 192
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=87.71 E-value=0.64 Score=49.68 Aligned_cols=22 Identities=18% Similarity=0.204 Sum_probs=17.2
Q ss_pred cCCCEEEEcCCCCchHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLP 524 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~ 524 (976)
.|.-++|+|++|+|||+.+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHH
Confidence 4667889999999999764433
No 193
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=87.63 E-value=1.5 Score=42.72 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=51.3
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||.|+++..|..++..+.. .|+.+..++|+.+..... ..+.. ...|+|||.- +. .-.++
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~-----~~----~Gid~ 100 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQ----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNV-----CA----RGIDV 100 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCS-----CC----TTTCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecc-----hh----cCCCc
Confidence 45899999999998887776655 578899999998766553 33333 4689999932 21 12577
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 101 ~~~~~Vi~ 108 (175)
T 2rb4_A 101 KQVTIVVN 108 (175)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 78888885
No 194
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.56 E-value=3 Score=41.91 Aligned_cols=71 Identities=17% Similarity=0.275 Sum_probs=54.0
Q ss_pred CcEEEEecCHHHHHHHHHHHHHC-----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----c-cccCCCCCC
Q 002040 715 GKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKEL 783 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~-~~GlDi~~v 783 (976)
.++||.|++..-+..++..+... ++.+..++|+.+...... .+..+...|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999988887764 688999999998765543 344567799999951 1 234677788
Q ss_pred cEEEE
Q 002040 784 ELVIN 788 (976)
Q Consensus 784 ~~VI~ 788 (976)
.+||.
T Consensus 160 ~~lVi 164 (220)
T 1t6n_A 160 KHFIL 164 (220)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 88885
No 195
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=87.05 E-value=1.5 Score=42.23 Aligned_cols=72 Identities=15% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+..+ .++
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----~d~ 96 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRN----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLARG----IDV 96 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGTTT----CCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhhcC----CCc
Confidence 45799999999998887777665 578899999998766543 33333 468999993 22221 567
Q ss_pred CCceEEEec
Q 002040 616 RRVTYLVMD 624 (976)
Q Consensus 616 ~~~~~vVlD 624 (976)
..+.+||.=
T Consensus 97 ~~~~~Vi~~ 105 (165)
T 1fuk_A 97 QQVSLVINY 105 (165)
T ss_dssp CSCSEEEES
T ss_pred ccCCEEEEe
Confidence 778887763
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.00 E-value=1.2 Score=44.69 Aligned_cols=22 Identities=23% Similarity=-0.016 Sum_probs=16.8
Q ss_pred CCCEEEEcCCCCchHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~i 525 (976)
|.-+++.|++|+|||+.+...+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999997644433
No 197
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=86.58 E-value=4.1 Score=48.26 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=19.6
Q ss_pred HHHHhcCCCEEEEcCCCCchHHHH
Q 002040 498 LPVIMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 498 i~~il~g~d~i~~a~TGsGKT~~~ 521 (976)
...+..+..++++||+|+|||+.+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 344567889999999999999753
No 198
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=86.41 E-value=3.8 Score=41.18 Aligned_cols=71 Identities=11% Similarity=0.243 Sum_probs=51.2
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH---HHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+..+||.|+|+.-+..++..+.. .++.+..++|+.+..++.. .+.. ...|+|||. .+.. -.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~----Gidi 97 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAAR----GLDI 97 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH----HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTTC----SSSC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHH----cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhhc----CCCC
Confidence 45789999999988887776665 4788999999988766543 3333 468999993 2222 2577
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 98 ~~v~~Vi~ 105 (212)
T 3eaq_A 98 PQVDLVVH 105 (212)
T ss_dssp CCBSEEEE
T ss_pred ccCcEEEE
Confidence 78888874
No 199
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.39 E-value=1.3 Score=50.51 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=13.9
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
.-+.++|++|+|||+.+
T Consensus 294 eVI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCcccHHHHH
Confidence 35778899999999853
No 200
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=86.27 E-value=1.5 Score=50.22 Aligned_cols=52 Identities=15% Similarity=0.253 Sum_probs=38.7
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
.+....+.|-||||||+++.. ++.. .+..+|||||+..+|.|++..+..|+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~----------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER----------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH----------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH----------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 355688899999999975322 2222 122479999999999999999998754
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.26 E-value=2.9 Score=47.21 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=30.4
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEc--cCHHHHHHHHHHHHHHHhhcCcEEE
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMA--PTRELVQQIHSDIRKFAKVMGVRCV 572 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~--Ptr~La~Q~~~~~~~~~~~~~~~~~ 572 (976)
.++++|++|+|||++.+-.+. ++... .|.+|+++. |.+..+... +..+....++.+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~~------~G~kVllvd~D~~r~~a~~q---l~~~~~~~~l~v~ 160 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLREK------HKKKVLVVSADVYRPAAIKQ---LETLAEQVGVDFF 160 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT------SCCCEEEEECCCSSTTHHHH---HHHHHHHHTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHh------cCCeEEEEecCCCCccHHHH---HHhhcccCCeeEE
Confidence 567779999999987544333 33321 144566655 444444322 2333344455543
No 202
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=85.96 E-value=1.8 Score=42.54 Aligned_cols=71 Identities=13% Similarity=0.321 Sum_probs=43.3
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH---HHHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||.|+++..|..++..+.. .|+.+..++|+.+.... +..+.. ...|+|||. .+..+ .++
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----ldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHH----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC---------------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHH----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhhcC----CCc
Confidence 56799999999998887777665 57889999998765443 233333 568999993 22221 467
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 113 ~~~~~VI~ 120 (185)
T 2jgn_A 113 SNVKHVIN 120 (185)
T ss_dssp CSBSEEEE
T ss_pred ccCCEEEE
Confidence 77888775
No 203
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=85.66 E-value=1.8 Score=51.14 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=55.1
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHh--ccCCccEEEecC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF--KSNVCNLLIATS 772 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F--~~g~~~vLVaT~ 772 (976)
..+.+||++|++.-+......|...|+.+..++|+++..++..++..+ ..+..+|||+|+
T Consensus 83 ~~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 83 SDGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred cCCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 467999999999999999999999999999999999999998888888 578899999997
No 204
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.45 E-value=1 Score=59.85 Aligned_cols=44 Identities=18% Similarity=0.199 Sum_probs=31.2
Q ss_pred HHHHhc------CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 498 LPVIMS------GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 498 i~~il~------g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
+..++. +..++++||+|+|||..++..+..... .|..|+++..-
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~--------~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAE 1464 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT--------TTCCEEEECTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEEEcc
Confidence 555665 678999999999999876555554432 35667777754
No 205
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=85.31 E-value=2.9 Score=43.22 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=52.8
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----cc--ccCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AA--RGLDVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~~--~GlDi~~ 782 (976)
..++||.|+++.-+..++..|... ++.+..++|+.+.......+ .+...|||+|.- +. .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 347999999999998888777654 78899999998876554333 246889999951 11 3567778
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 187 ~~~lVi 192 (249)
T 3ber_A 187 LKYLVM 192 (249)
T ss_dssp CCEEEE
T ss_pred cCEEEE
Confidence 888774
No 206
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=85.17 E-value=1.7 Score=48.55 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=13.7
Q ss_pred CCEEE--EcCCCCchHHHH
Q 002040 505 RDCIG--VAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~--~a~TGsGKT~~~ 521 (976)
..++| .|+.|+|||..+
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35777 799999999763
No 207
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.02 E-value=0.92 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=16.1
Q ss_pred CCEEEEcCCCCchHHHHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~l~i 525 (976)
..++++|++|+|||+.+...+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998644433
No 208
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=84.66 E-value=1.6 Score=42.41 Aligned_cols=71 Identities=11% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||.- +. .-.++
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~----~Gldi 97 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVE----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG----RGMDI 97 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS----TTCCG
T ss_pred CCcEEEEECCHHHHHHHHHHHHh----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh----cCcch
Confidence 45799999999999888777765 478899999998766553 33333 4689999942 11 12567
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 98 ~~~~~Vi~ 105 (172)
T 1t5i_A 98 ERVNIAFN 105 (172)
T ss_dssp GGCSEEEE
T ss_pred hhCCEEEE
Confidence 77888775
No 209
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=84.60 E-value=3.3 Score=48.12 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=62.9
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-c-----cccCCCCCCcEE
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKELELV 786 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-~-----~~GlDi~~v~~V 786 (976)
..+.+||++|++.-+......|...|+.+..+||+.+..++..++..+..|..+|||+|+- + ...+....+.+|
T Consensus 64 ~~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~v 143 (523)
T 1oyw_A 64 LNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLL 143 (523)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEE
T ss_pred hCCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEE
Confidence 4689999999999999999999999999999999999999999999999999999999952 1 122334556666
Q ss_pred EE
Q 002040 787 IN 788 (976)
Q Consensus 787 I~ 788 (976)
|.
T Consensus 144 Vi 145 (523)
T 1oyw_A 144 AV 145 (523)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 210
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.50 E-value=4 Score=43.55 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l 523 (976)
+.-++++|++|+|||+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~ 117 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGK 117 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34567789999999986443
No 211
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=84.47 E-value=5.2 Score=40.93 Aligned_cols=71 Identities=8% Similarity=0.093 Sum_probs=52.9
Q ss_pred CCcEEEEecCHHHHHHHHHHHHH----CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----ccc-ccCCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKEL 783 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~-~GlDi~~v 783 (976)
...+||.|+++.-+..++..+.. .++.+..++|+.+.......+.. ...|||+|. .+. ..+++..+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 45799999999988888776654 48899999999987766554432 478999995 222 34577788
Q ss_pred cEEEE
Q 002040 784 ELVIN 788 (976)
Q Consensus 784 ~~VI~ 788 (976)
.+||.
T Consensus 178 ~~lVi 182 (242)
T 3fe2_A 178 TYLVL 182 (242)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 88874
No 212
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.37 E-value=0.69 Score=47.65 Aligned_cols=50 Identities=18% Similarity=0.310 Sum_probs=28.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 561 (976)
|.-+++.|++|+|||..++-.+++.+... +..+++++-. .-..++...+.
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~ 79 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMA 79 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHH
Confidence 56689999999999976444444433321 3345666532 22344444443
No 213
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=84.36 E-value=1.1 Score=49.55 Aligned_cols=19 Identities=42% Similarity=0.492 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
....++++||+|+|||..+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3568999999999999753
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=83.93 E-value=6.2 Score=45.36 Aligned_cols=57 Identities=16% Similarity=0.006 Sum_probs=30.6
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc--CHHHHHHHHHHHHHHHhhcCcEEEE
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP--TRELVQQIHSDIRKFAKVMGVRCVP 573 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P--tr~La~Q~~~~~~~~~~~~~~~~~~ 573 (976)
.++++|.+|+|||+.+.-.+ .++.. .|.+++++.. .+..+..+. ..+....++.+..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~-------~G~kVllVd~D~~r~aa~~qL---~~~~~~~~i~v~~ 161 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR-------KGWKTCLICADTFRAGAFDQL---KQNATKARIPFYG 161 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH-------TTCCEEEEEECCSSSHHHHHH---HHHHHHHTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh-------CCCeEEEEeccccchhHHHHH---HHHhhccCceEEc
Confidence 47788999999998744333 33332 1445666654 344443332 2233334555444
No 215
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=83.93 E-value=5.5 Score=46.54 Aligned_cols=96 Identities=19% Similarity=0.253 Sum_probs=63.1
Q ss_pred CchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH---HHhc-C
Q 002040 515 SGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-G 590 (976)
Q Consensus 515 sGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~ 590 (976)
..+....+..+...+... ..+.++||.|+|+.-|..++..+...+. .++.+..++|+.+...... .+.. .
T Consensus 319 ~~~~~~~~~~l~~~~~~~-----~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~ 392 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER-----DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDE 392 (563)
T ss_dssp THHHHHHHHHHHHHHHHT-----TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCS
T ss_pred HhhHHHHHHHHHHHHhhc-----CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCC
Confidence 344444444444444432 2356899999999999999888877543 3778888999987665533 3333 5
Q ss_pred CeEEEeCchhHHHHHHhcCCcccccCCceEEEecC
Q 002040 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDE 625 (976)
Q Consensus 591 ~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDE 625 (976)
..|+|||. .+... .++..+.+||.-.
T Consensus 393 ~~vLvaT~-----~~~~G----iDip~v~~VI~~~ 418 (563)
T 3i5x_A 393 SGILVCTD-----VGARG----MDFPNVHEVLQIG 418 (563)
T ss_dssp SEEEEECG-----GGTSS----CCCTTCCEEEEES
T ss_pred CCEEEEcc-----hhhcC----CCcccCCEEEEEC
Confidence 79999994 23222 5778888887533
No 216
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=83.46 E-value=2.2 Score=47.06 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=24.2
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
|.-++|.|++|+|||.. ++.++..+... +..|+|+..-
T Consensus 74 G~li~I~G~pGsGKTtl-al~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTL-ALAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TSEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESS
T ss_pred CcEEEEEcCCCCChHHH-HHHHHHHHHHC-------CCeEEEEECC
Confidence 45688889999999975 44444444332 3356666543
No 217
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=83.40 E-value=1.3 Score=54.04 Aligned_cols=55 Identities=22% Similarity=0.360 Sum_probs=33.7
Q ss_pred CCcccccccCCCCHHHHHHHHHc---CCCCCcHHHHHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 463 PKPIKTWHQTGLTSKIMETIRKL---NYEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 463 p~pi~~~~~~~l~~~l~~~l~~~---~~~~p~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
..|-.+|.+.+....+.+.|... .+..|.-++.-. +...+.+|+.||+|+|||+.
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHH
Confidence 34567899998888887776642 222221111100 01235799999999999975
No 218
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.02 E-value=17 Score=38.96 Aligned_cols=16 Identities=13% Similarity=0.069 Sum_probs=14.1
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
..++|.|+.|+|||..
T Consensus 31 ~~v~i~G~~G~GKT~L 46 (357)
T 2fna_A 31 PITLVLGLRRTGKSSI 46 (357)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred CcEEEECCCCCCHHHH
Confidence 5788999999999975
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.93 E-value=2.6 Score=51.48 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+.++|++|++|+|||..+
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 3567999999999999763
No 220
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=82.43 E-value=4.7 Score=40.97 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=49.1
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----ccc--cCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AAR--GLDVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~~~--GlDi~~ 782 (976)
..++||.|++..-+..++..+... ++.+..++|+.+.......+ +..+|+|+|.- +.. .+++..
T Consensus 97 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~ 171 (236)
T 2pl3_A 97 GLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATD 171 (236)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCccccc
Confidence 558999999999999988888765 47888999988755443333 46789999951 112 356667
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 172 ~~~lVi 177 (236)
T 2pl3_A 172 LQMLVL 177 (236)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 777774
No 221
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.34 E-value=1 Score=48.60 Aligned_cols=50 Identities=12% Similarity=-0.051 Sum_probs=29.1
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIR 561 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~ 561 (976)
.|.-++|+|++|+|||..++..+... ..+ +..|++++.- .-..|+...+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~-a~~-------g~~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM-SDN-------DDVVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH-HTT-------TCEEEEEESS-SCHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH-HHc-------CCeEEEEECC-CCHHHHHHHHH
Confidence 35668899999999997544444433 321 3457777633 22344444443
No 222
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=82.32 E-value=2.7 Score=42.75 Aligned_cols=70 Identities=16% Similarity=0.296 Sum_probs=51.8
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC-----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-c-----cccCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-~-----~~GlDi~~ 782 (976)
..++||.|+++.-+..++..+... ++.+..++|+.+.......+ ....|+|+|.- + ...+++..
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCccccc
Confidence 458999999999999998888764 67889999999876654433 25789999962 1 13456667
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 167 ~~~lVi 172 (230)
T 2oxc_A 167 IRLFIL 172 (230)
T ss_dssp CCEEEE
T ss_pred CCEEEe
Confidence 777764
No 223
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=82.31 E-value=1.9 Score=44.12 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=17.9
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il 526 (976)
.|.-++++|++|+|||+.+...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 356788999999999986544333
No 224
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=82.21 E-value=4.6 Score=44.87 Aligned_cols=72 Identities=13% Similarity=0.295 Sum_probs=53.2
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH---HHhc-CCeEEEeCchhHHHHHHhcCCcccc
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~ 614 (976)
.+.++||+|+++..+..++..+.. .++.+..++|+.+..+... .+.. ...|+|||. .+..+ .+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~G----id 341 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYH----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAARG----LD 341 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHTT----SC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH----CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhcC----CC
Confidence 467899999999999888777765 5788999999988665533 3333 468999994 44433 57
Q ss_pred cCCceEEEe
Q 002040 615 LRRVTYLVM 623 (976)
Q Consensus 615 l~~~~~vVl 623 (976)
+..+.+||.
T Consensus 342 ip~v~~Vi~ 350 (417)
T 2i4i_A 342 ISNVKHVIN 350 (417)
T ss_dssp CCCEEEEEE
T ss_pred cccCCEEEE
Confidence 778888875
No 225
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.00 E-value=7.3 Score=45.75 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=55.8
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCcccc
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~ 614 (976)
.+.++||.|+|+..|..++..+...+. .++.+..++|+.+..... ..+.. ...|+|||. .+..+ .+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~~G----iD 356 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGARG----MD 356 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGTSS----CC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhhcC----CC
Confidence 356899999999999999888877543 377888899998766543 33333 579999994 23222 57
Q ss_pred cCCceEEEecCc
Q 002040 615 LRRVTYLVMDEA 626 (976)
Q Consensus 615 l~~~~~vVlDEa 626 (976)
+..+.+||.-..
T Consensus 357 ip~v~~VI~~~~ 368 (579)
T 3sqw_A 357 FPNVHEVLQIGV 368 (579)
T ss_dssp CTTCCEEEEESC
T ss_pred cccCCEEEEcCC
Confidence 788888885443
No 226
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.51 E-value=5.3 Score=42.61 Aligned_cols=71 Identities=11% Similarity=0.246 Sum_probs=50.8
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH---HHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+..+||.|+|+.-+..++..+.. .++.+..++|+.+..++.. .+.. ...|+|||. .+.. -.++
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~~----Gidi 94 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAAR----GLDI 94 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTTC----STTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhhc----Cccc
Confidence 45789999999988777666554 5889999999987666543 3333 468999993 2222 2577
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 95 ~~v~~VI~ 102 (300)
T 3i32_A 95 PQVDLVVH 102 (300)
T ss_dssp CCCSEEEE
T ss_pred cceeEEEE
Confidence 78888884
No 227
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=81.43 E-value=1 Score=54.85 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
+.+|+.||+|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999975
No 228
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=81.39 E-value=1.5 Score=46.81 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=17.3
Q ss_pred cCCCEEEEcCCCCchHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~i 525 (976)
.+..++++|++|+|||+.+...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678889999999998644433
No 229
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=81.36 E-value=11 Score=38.49 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=50.1
Q ss_pred CcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----c-cccCCCCCCc
Q 002040 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKELE 784 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~-~~GlDi~~v~ 784 (976)
.++||.|+++.-+..++..+... ++.+..++|+.+.......+ .....|||+|.- + ...+++..+.
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 176 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFCK 176 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhCC
Confidence 48999999999999888877654 57788899988765443322 345789999961 1 1235677788
Q ss_pred EEEE
Q 002040 785 LVIN 788 (976)
Q Consensus 785 ~VI~ 788 (976)
+||.
T Consensus 177 ~lVi 180 (253)
T 1wrb_A 177 YIVL 180 (253)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8774
No 230
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=81.36 E-value=3.1 Score=45.05 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=25.4
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
.|.-+++.|++|+|||..++..+. .+..... ..+.+..|+++.-.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~-~~~~~~~-~gg~~~~vlyi~~e 150 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV-NVQLPPE-KGGLSGKAVYIDTE 150 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH-HTTSCGG-GTCCSCEEEEEESS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH-HHhcccc-cCCCCCeEEEEECC
Confidence 356789999999999976444333 3221100 01124467777643
No 231
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.29 E-value=1.1 Score=42.15 Aligned_cols=21 Identities=10% Similarity=-0.042 Sum_probs=17.6
Q ss_pred HHhcCCCEEEEcCCCCchHHH
Q 002040 500 VIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 500 ~il~g~d~i~~a~TGsGKT~~ 520 (976)
....+.+++++|++|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678899999999999975
No 232
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.15 E-value=1.6 Score=49.55 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=24.1
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
|.-+||.|++|+|||+.++-.+.+.+.. |..|+|++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~--------g~~vl~fSl 233 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN--------DDVVNLHSL 233 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT--------TCEEEEECS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc--------CCEEEEEEC
Confidence 4458888999999997644444443332 446777763
No 233
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.46 E-value=1.3 Score=48.53 Aligned_cols=39 Identities=23% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr 550 (976)
|.-++|.|++|+|||+. ++.++..+.. .+..|+++..-.
T Consensus 61 G~i~~I~GppGsGKSTL-al~la~~~~~-------~gg~VlyId~E~ 99 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTL-ALHAIAEAQK-------MGGVAAFIDAEH 99 (356)
T ss_dssp TEEEEEEESTTSSHHHH-HHHHHHHHHH-------TTCCEEEEESSC
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHHHHh-------cCCeEEEEeccc
Confidence 45688899999999975 4444444433 134567776543
No 234
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=80.14 E-value=2.8 Score=42.93 Aligned_cols=72 Identities=14% Similarity=0.315 Sum_probs=45.2
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----cccc-cCCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKEL 783 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~~-GlDi~~v 783 (976)
..++||.|+++.-+..++..+... ++.+..++|+..... .+..+..+...|||+|. .+.. .+++..+
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 458999999999999998888764 567778888765432 23445567789999994 2222 3566777
Q ss_pred cEEEE
Q 002040 784 ELVIN 788 (976)
Q Consensus 784 ~~VI~ 788 (976)
.+||.
T Consensus 175 ~~lVi 179 (237)
T 3bor_A 175 KMFVL 179 (237)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77774
No 235
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=80.02 E-value=3.3 Score=41.88 Aligned_cols=72 Identities=13% Similarity=0.272 Sum_probs=48.3
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHC---CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC------cccccCCCCCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKH---GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS------VAARGLDVKEL 783 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~---~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~------v~~~GlDi~~v 783 (976)
...++||.++++.-+..++..+... ++.+..++|+.+.......+ . ...+|||+|. .....+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 3457999999999999999888874 67888899987755443332 2 3478999995 11235667778
Q ss_pred cEEEE
Q 002040 784 ELVIN 788 (976)
Q Consensus 784 ~~VI~ 788 (976)
.+||.
T Consensus 169 ~~lVi 173 (228)
T 3iuy_A 169 TYLVI 173 (228)
T ss_dssp CEEEE
T ss_pred eEEEE
Confidence 88774
No 236
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=79.97 E-value=4.5 Score=39.99 Aligned_cols=71 Identities=13% Similarity=0.237 Sum_probs=50.5
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC-----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----cccc-cCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLDVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~~-GlDi~~ 782 (976)
..++||.|++..-+..++..+... ++.+..++|+.+....... + .+...|+|+|. .+.. .+++..
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 347999999999999888887653 5788899999886544322 2 35678999996 1222 345667
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777774
No 237
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.65 E-value=8.7 Score=37.84 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC--CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----ccc-ccCCCCCCcE
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH--GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKELEL 785 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~-~GlDi~~v~~ 785 (976)
..++||.|++..-+..++..+... ++.+..++|+.+.......+. ....|+|+|. .+. ..+++..+.+
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 457999999999999999988876 467888999887654433332 2478999995 112 2456777888
Q ss_pred EEE
Q 002040 786 VIN 788 (976)
Q Consensus 786 VI~ 788 (976)
||.
T Consensus 148 iVi 150 (207)
T 2gxq_A 148 AVL 150 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 238
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.64 E-value=4.4 Score=44.54 Aligned_cols=72 Identities=15% Similarity=0.277 Sum_probs=54.7
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC-----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-c-----cccCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARGLDVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-~-----~~GlDi~~ 782 (976)
..++||.|++..-+..++..+... ++.+..++|+.+....... +..+...|+|+|.- + ...+++..
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 458999999999999988888764 7889999999987665443 44567899999951 1 23456778
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 153 ~~~vVi 158 (391)
T 1xti_A 153 IKHFIL 158 (391)
T ss_dssp CSEEEE
T ss_pred cCEEEE
Confidence 888884
No 239
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.56 E-value=6 Score=48.21 Aligned_cols=16 Identities=38% Similarity=0.299 Sum_probs=14.0
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
.++++||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4999999999999763
No 240
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=77.98 E-value=2.7 Score=49.14 Aligned_cols=19 Identities=26% Similarity=0.132 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+..++++||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999753
No 241
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=77.78 E-value=1.1 Score=46.97 Aligned_cols=20 Identities=25% Similarity=0.134 Sum_probs=16.6
Q ss_pred HhcCCCEEEEcCCCCchHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~ 520 (976)
+..|.-++++||||||||+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 34667789999999999985
No 242
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=77.10 E-value=79 Score=33.65 Aligned_cols=183 Identities=12% Similarity=0.130 Sum_probs=89.6
Q ss_pred CCeEEEEccCH---HHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH---HH-h--cCCeEEEeCch--hHHHHHHhc
Q 002040 540 GPVGLIMAPTR---ELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---EL-K--RGTEIVVCTPG--RMIDILCTS 608 (976)
Q Consensus 540 ~~~vLIl~Ptr---~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l-~--~~~~Iiv~Tp~--~L~~~l~~~ 608 (976)
.+.+.||+|.. ....++..-+...+...|+.+.++........+.. .+ . .+++-||.+|. .....+..-
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~ 82 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQILRLS 82 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHH
Confidence 34667777753 34566667777777788888887776665554432 22 2 26665554442 222233211
Q ss_pred CCcccccCCceEEEecCccccc-------------------ccCC----chHHHHHHHhcC----CC-CcEEEEeccCcH
Q 002040 609 GGKITNLRRVTYLVMDEADRMF-------------------DMGF----EPQITRIVQNIR----PD-RQTVLFSATFPR 660 (976)
Q Consensus 609 ~~~~~~l~~~~~vVlDEah~~~-------------------~~~f----~~~i~~il~~~~----~~-~q~i~~SAT~~~ 660 (976)
.-..+-+|++|-.-.-. ..+. ......++.... .. .+++++++....
T Consensus 83 -----~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~ 157 (350)
T 3h75_A 83 -----QGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVT 157 (350)
T ss_dssp -----TTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTS
T ss_pred -----HhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCC
Confidence 11234555555322100 0010 122334444441 12 578888776432
Q ss_pred HH-----HHHHHHHcCCCeEEEeCCcccccCCceEEEEecCcch-HHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHH
Q 002040 661 QV-----EILARKVLNKPVEIQVGGRSVVNKDITQLVEVRPESD-RFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDL 734 (976)
Q Consensus 661 ~~-----~~l~~~~l~~~~~i~~~~~~~~~~~i~q~~~~~~~~~-k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L 734 (976)
.. .-+...+-..+. +. +...+....... -...+..+|... .....|||.+-..+..+...|
T Consensus 158 ~~~~~R~~Gf~~~l~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~aI~~~~d~~a~g~~~al 224 (350)
T 3h75_A 158 PAAQLRERGLRRALAEHPQ-VH----------LRQLVYGEWNRERAYRQAQQLLKRY--PKTQLVWSANDEMALGAMQAA 224 (350)
T ss_dssp HHHHHHHHHHHHHHHHCTT-EE----------EEEEEECTTCHHHHHHHHHHHHHHC--TTEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCC-eE----------EEEEeeCCCcHHHHHHHHHHHHHhC--CCcCEEEECChHHHHHHHHHH
Confidence 21 111111111111 00 111111111112 223344444432 456889999999999999999
Q ss_pred HHCCCC
Q 002040 735 LKHGYP 740 (976)
Q Consensus 735 ~~~~~~ 740 (976)
...|+.
T Consensus 225 ~~~G~~ 230 (350)
T 3h75_A 225 RELGRK 230 (350)
T ss_dssp HHTTCC
T ss_pred HHcCCC
Confidence 998865
No 243
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=76.74 E-value=3.3 Score=45.19 Aligned_cols=44 Identities=9% Similarity=-0.087 Sum_probs=25.3
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccC
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPT 549 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Pt 549 (976)
|.-+++.|++|+|||..++. ++..+..... ..+.+..++++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~-la~~~~~~~~-~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHT-LCVTAQLPGA-GGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHH-HHHHTTSCBT-TTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHH-HHHHHhcccc-cCCCCCeEEEEECC
Confidence 45688999999999975443 3333221111 11234567777643
No 244
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=76.52 E-value=2.7 Score=46.73 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=28.1
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRE 551 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~ 551 (976)
.+.+++|+|+||+|||+..-. ++..+.. .+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~-------~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM-------QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH-------CCCEEEEEeCCcC
Confidence 567899999999999976433 3333332 2556788878754
No 245
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=75.86 E-value=3.7 Score=44.88 Aligned_cols=27 Identities=22% Similarity=0.115 Sum_probs=19.2
Q ss_pred HHHHHhc-----CCCEEEEcCCCCchHHHHHH
Q 002040 497 ALPVIMS-----GRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 497 ~i~~il~-----g~d~i~~a~TGsGKT~~~~l 523 (976)
.+..++. |.-+.|+|++|||||+.+..
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHH
Confidence 4455553 45688899999999976443
No 246
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=75.72 E-value=6.2 Score=42.20 Aligned_cols=18 Identities=39% Similarity=0.534 Sum_probs=14.5
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+.-+.++|++|+|||+.+
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456778899999999853
No 247
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=75.65 E-value=3.3 Score=47.64 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.4
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
+.++++||+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35999999999999753
No 248
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=75.41 E-value=2.7 Score=56.03 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=31.3
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIH 557 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~ 557 (976)
.+..++++|++|+|||+.++..+...+.. |..++++.- -++..+++
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~--------Ge~~~Fit~-ee~~~~L~ 1125 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDA-EHALDPIY 1125 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--------TCCEEEECT-TSCCCHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc--------CCeEEEEEc-cccHHHHH
Confidence 56789999999999998766666655432 556677653 34444444
No 249
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=75.11 E-value=7 Score=42.32 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=51.9
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCcccc
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITN 614 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~ 614 (976)
.+.++||+|+++.-+..++..+.. .++.+..++|+.+..... ..+.. ...|+|||. .+..+ .+
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~G----id 303 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRD----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSRG----ID 303 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHHH----CC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhcC----CC
Confidence 356789999999999888777765 478889999988766543 33333 468999994 22222 46
Q ss_pred cCCceEEEec
Q 002040 615 LRRVTYLVMD 624 (976)
Q Consensus 615 l~~~~~vVlD 624 (976)
+..+.+||.-
T Consensus 304 ~~~~~~Vi~~ 313 (367)
T 1hv8_A 304 VNDLNCVINY 313 (367)
T ss_dssp CSCCSEEEES
T ss_pred cccCCEEEEe
Confidence 7778888753
No 250
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.04 E-value=8.9 Score=41.29 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l 523 (976)
++-++++|++|+|||+.+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577889999999986443
No 251
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=74.45 E-value=9.6 Score=46.70 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.+..++++|++|+|||+.
T Consensus 237 ~~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCCEEEECSCTTSSHHHH
T ss_pred CCCeEEEECcCCCCHHHH
Confidence 356799999999999975
No 252
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=74.41 E-value=11 Score=39.00 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=51.8
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----ccc--ccCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA--RGLDVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~--~GlDi~~ 782 (976)
+.++||.++++.-+..++..|... ++.+..++|+......... +..| .+|||+|. .+. .++++..
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 567999999999999988888763 5677889998876554433 3334 88999994 121 2467788
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 202 l~~lVi 207 (262)
T 3ly5_A 202 LQCLVI 207 (262)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888774
No 253
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=74.36 E-value=5.5 Score=44.09 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=52.1
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||+|+++.-|..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+..+ .++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~G----idi 332 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 332 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGTSS----CCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccccC----CCc
Confidence 45799999999999888877766 478888999998766553 33333 468999994 22222 578
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+++||.
T Consensus 333 p~~~~Vi~ 340 (412)
T 3fht_A 333 EQVSVVIN 340 (412)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 88888884
No 254
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.12 E-value=3.7 Score=41.30 Aligned_cols=70 Identities=9% Similarity=0.168 Sum_probs=44.6
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcc------cccCCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA------ARGLDVKEL 783 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~------~~GlDi~~v 783 (976)
..++||.|++..-+..++..+... ++.+..++|+.+....... +. ..+|+|+|.-. ...+++..+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 458999999999998888877653 6788899998765543322 22 27899999521 234566777
Q ss_pred cEEEE
Q 002040 784 ELVIN 788 (976)
Q Consensus 784 ~~VI~ 788 (976)
.+||.
T Consensus 157 ~~iVi 161 (224)
T 1qde_A 157 KMFIL 161 (224)
T ss_dssp CEEEE
T ss_pred cEEEE
Confidence 77774
No 255
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=73.62 E-value=15 Score=43.89 Aligned_cols=77 Identities=13% Similarity=0.259 Sum_probs=56.0
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHH---Hhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISE---LKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||+|+|+..|..+...+.. .|+.+.+++|+....+.... +.. ...|+|||. .+..+ +++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~~G----lDi 511 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKE----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLREG----LDI 511 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCSTT----CCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHh----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhhCC----ccc
Confidence 56899999999998877766665 57888888888765554333 333 478999994 22221 577
Q ss_pred CCceEEEecCcccc
Q 002040 616 RRVTYLVMDEADRM 629 (976)
Q Consensus 616 ~~~~~vVlDEah~~ 629 (976)
..+++||+=+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 88999999888753
No 256
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=73.53 E-value=3.6 Score=44.36 Aligned_cols=23 Identities=22% Similarity=0.034 Sum_probs=17.0
Q ss_pred CCCEEEEcCCCCchHHHHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il 526 (976)
|.-+++.|++|+|||..++..+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999976444443
No 257
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=73.18 E-value=6.1 Score=50.06 Aligned_cols=74 Identities=9% Similarity=0.197 Sum_probs=56.7
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHC----CC----CceeccCCCCHHHHHHHHHHhccCCccEEEecC-cccccCC-CCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKH----GY----PCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VAARGLD-VKE 782 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~----~~----~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-v~~~GlD-i~~ 782 (976)
.+.++||.+|++.-+.+++..|... ++ .+..+||+++...+...+..+.+ .+|||+|+ .+..-+. +..
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 3568999999999999888887653 56 78999999999888877887777 89999996 2221111 557
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 258
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=73.17 E-value=3.1 Score=47.00 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=31.4
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQ 554 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~ 554 (976)
...+++++|+||||||..+ .+++..+... +..++|+=|.-++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 3578999999999999864 4444444432 456788889887753
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.63 E-value=3.4 Score=41.51 Aligned_cols=31 Identities=26% Similarity=0.233 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHhcCCCEEEEcCCCCchHHHH
Q 002040 491 MPIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 491 ~~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~ 521 (976)
+.-|..++..+..|.-+.++|+.|||||+.+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4456778888888989999999999999853
No 260
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=72.30 E-value=4.1 Score=43.67 Aligned_cols=41 Identities=12% Similarity=-0.097 Sum_probs=26.6
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTREL 552 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~L 552 (976)
-+++.|++|+|||+.++..+...... +.+..|+++..--.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~------g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQ------YPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHH------CTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhc------CCCceEEEEeccchh
Confidence 47888999999998655444443322 124578888765444
No 261
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=72.29 E-value=11 Score=42.20 Aligned_cols=88 Identities=13% Similarity=0.206 Sum_probs=60.6
Q ss_pred CcchHHHHHHHHHHhh--hcCCcEEEEecCHHHHHHHHHHHHHC-CC---CceeccCCCCHHHHHHHHHHhccCCccEEE
Q 002040 696 PESDRFLRLLELLGEW--YEKGKILIFVHSQEKCDALFRDLLKH-GY---PCLSLHGAKDQTDRESTISDFKSNVCNLLI 769 (976)
Q Consensus 696 ~~~~k~~~l~~~l~~~--~~~~kvLIF~~s~~~~~~l~~~L~~~-~~---~~~~lhg~~~~~~R~~~~~~F~~g~~~vLV 769 (976)
....|-...+..+... ...+++||.||+..-+...+..|... ++ .+..+||+.....+..... ...|+|
T Consensus 32 tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~-----~~~ivv 106 (494)
T 1wp9_A 32 TGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-----RAKVIV 106 (494)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-----HCSEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc-----CCCEEE
Confidence 3345544444443333 24679999999999999888888775 55 8899999999877655443 467999
Q ss_pred ecC-ccc-----ccCCCCCCcEEEE
Q 002040 770 ATS-VAA-----RGLDVKELELVIN 788 (976)
Q Consensus 770 aT~-v~~-----~GlDi~~v~~VI~ 788 (976)
+|. .+. ..+....+.+||.
T Consensus 107 ~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 107 ATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp ECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred ecHHHHHHHHhcCCcchhhceEEEE
Confidence 995 221 2456777888775
No 262
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=72.17 E-value=3.2 Score=47.91 Aligned_cols=37 Identities=24% Similarity=0.061 Sum_probs=24.7
Q ss_pred HHHcCCCCCcHHHHHHHHH-HhcCCCEEEEcCCCCchHHH
Q 002040 482 IRKLNYEKPMPIQAQALPV-IMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 482 l~~~~~~~p~~~Q~~~i~~-il~g~d~i~~a~TGsGKT~~ 520 (976)
|..+|. +++.+...+.. +..|..++++|+||||||+.
T Consensus 239 l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 239 LIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 444552 23444444443 45788899999999999975
No 263
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=72.16 E-value=17 Score=43.46 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=54.7
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHH---HHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQIS---ELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||+|+|+..|..+...+.. .|+.+.+++|+.+..+... .+.. ..+|+|||. .+.. -+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~~----GlDi 505 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVE----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLRE----GLDI 505 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHH----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCCT----TCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHh----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhhc----CccC
Confidence 56899999999998877766665 5788888888876655433 3443 468999993 2222 1577
Q ss_pred CCceEEEecCccc
Q 002040 616 RRVTYLVMDEADR 628 (976)
Q Consensus 616 ~~~~~vVlDEah~ 628 (976)
..+++||+=+++.
T Consensus 506 p~v~lVI~~d~d~ 518 (664)
T 1c4o_A 506 PEVSLVAILDADK 518 (664)
T ss_dssp TTEEEEEETTTTS
T ss_pred CCCCEEEEeCCcc
Confidence 8899998877764
No 264
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=72.11 E-value=4.7 Score=45.26 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=20.8
Q ss_pred HHHHHHHh--cCCCEEEEcCCCCchHHHHHHHHHHHH
Q 002040 495 AQALPVIM--SGRDCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 495 ~~~i~~il--~g~d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
..++..++ .+.-++|+||||||||+. +-.++..+
T Consensus 156 ~~~L~~l~~~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 156 HDNFRRLIKRPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHTSSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 33444333 344578899999999975 33344443
No 265
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=71.98 E-value=3.1 Score=45.63 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.+..++++||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455688999999999975
No 266
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=71.79 E-value=21 Score=38.78 Aligned_cols=75 Identities=11% Similarity=0.208 Sum_probs=54.3
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||+|+++.-|..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+.. -.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidi 309 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKS----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLAR----GIDI 309 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGSS----SCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhc----CCCc
Confidence 56899999999999888777765 478888999998766543 33433 468999994 2222 2678
Q ss_pred CCceEEEecCcc
Q 002040 616 RRVTYLVMDEAD 627 (976)
Q Consensus 616 ~~~~~vVlDEah 627 (976)
..+.+||.-...
T Consensus 310 p~~~~Vi~~~~p 321 (395)
T 3pey_A 310 PTVSMVVNYDLP 321 (395)
T ss_dssp TTEEEEEESSCC
T ss_pred ccCCEEEEcCCC
Confidence 889998875544
No 267
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=69.88 E-value=8.7 Score=43.25 Aligned_cols=69 Identities=9% Similarity=0.194 Sum_probs=50.2
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCcccccCC
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNLRR 617 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~ 617 (976)
.+||.|+|+.-|..++..+.. .++.+..++|+....+.. ..+.. ...|+|||. .+..+ .++..
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~rG----lDi~~ 368 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSE----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VASRG----LDIKN 368 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGTSS----CCCTT
T ss_pred CEEEEEeCcHHHHHHHHHHHh----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhhCC----CCccc
Confidence 389999999999888777665 578899999998766553 33333 468999994 22222 57778
Q ss_pred ceEEEe
Q 002040 618 VTYLVM 623 (976)
Q Consensus 618 ~~~vVl 623 (976)
+.+||.
T Consensus 369 v~~VI~ 374 (434)
T 2db3_A 369 IKHVIN 374 (434)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 888875
No 268
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=69.78 E-value=11 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=15.0
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.|.-+.++|++|+|||+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456788999999999853
No 269
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=69.52 E-value=11 Score=43.72 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=47.9
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----cccc-C-CCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARG-L-DVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~~~G-l-Di~~ 782 (976)
.+++||.||+..-+..++..|... ++.+..+||+.+...+...+. ....|||+|.- +..+ + .+..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 568999999999888888777664 899999999987654432221 23779999951 2222 4 6777
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 888875
No 270
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=72.30 E-value=0.97 Score=43.81 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=46.9
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||.|+++..|..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+..+ .++
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~~G----id~ 96 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLRE----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAARG----IDI 96 (170)
Confidence 45789999999988877776665 477888888887654432 22332 457899983 22221 456
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 97 ~~~~~Vi~ 104 (170)
T 2yjt_D 97 PDVSHVFN 104 (170)
Confidence 66777665
No 271
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=68.64 E-value=12 Score=40.95 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
|.-+.++|++|+|||+.+
T Consensus 157 g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SEEEEEECCTTSCHHHHH
T ss_pred CeEEEEEcCCCChHHHHH
Confidence 445788999999999853
No 272
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=68.40 E-value=8.9 Score=42.46 Aligned_cols=71 Identities=11% Similarity=0.235 Sum_probs=50.9
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
..++||.|+++..+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+.. -.++
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~~----Gidi 342 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMRE----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWAR----GLDV 342 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGSS----SCCC
T ss_pred CCcEEEEEcCHHHHHHHHHHHHh----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhhC----cCCc
Confidence 34799999999998887777665 578888999998765543 33333 468999994 2222 2577
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 343 ~~v~~Vi~ 350 (410)
T 2j0s_A 343 PQVSLIIN 350 (410)
T ss_dssp TTEEEEEE
T ss_pred ccCCEEEE
Confidence 88888885
No 273
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=68.25 E-value=8.1 Score=42.62 Aligned_cols=71 Identities=14% Similarity=0.274 Sum_probs=51.1
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||+|+++.-+..++..+.. .++.+..++|+.+..+.. ..+.. ...|+|||. .+.. -.++
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~~----Gidi 324 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITD----LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLTR----GIDI 324 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHH----HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSSS----SCCC
T ss_pred CCcEEEEEecHHHHHHHHHHHHh----cCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cccc----CCCc
Confidence 45899999999998888777765 478888999988766543 33333 468999994 2221 2577
Q ss_pred CCceEEEe
Q 002040 616 RRVTYLVM 623 (976)
Q Consensus 616 ~~~~~vVl 623 (976)
..+.+||.
T Consensus 325 p~~~~Vi~ 332 (400)
T 1s2m_A 325 QAVNVVIN 332 (400)
T ss_dssp TTEEEEEE
T ss_pred cCCCEEEE
Confidence 78888875
No 274
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=67.86 E-value=5.5 Score=36.35 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=36.6
Q ss_pred HHHHHHHhhhcC-CcEEEEe-cCHHHHHHHHHHHHHCCCCceeccCCCCH
Q 002040 703 RLLELLGEWYEK-GKILIFV-HSQEKCDALFRDLLKHGYPCLSLHGAKDQ 750 (976)
Q Consensus 703 ~l~~~l~~~~~~-~kvLIF~-~s~~~~~~l~~~L~~~~~~~~~lhg~~~~ 750 (976)
.+...+...... .++|||| .+-..+..++..|...|+.+..|.|++..
T Consensus 77 ~~~~~~~~~~~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 77 DIYLQAAELALNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHhccCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 344444444455 7899999 57677788899999999999999998764
No 275
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=67.55 E-value=11 Score=41.14 Aligned_cols=71 Identities=8% Similarity=0.163 Sum_probs=52.0
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHH----CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----c-cccCCCCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLK----HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----A-ARGLDVKE 782 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~----~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~-~~GlDi~~ 782 (976)
...++||.|++..-+..++..+.. .++.+..++|+.+.......+. ...|+|+|.- + ...+.+..
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 345899999999999888887765 3678999999998766555443 4679999941 1 12455667
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 276
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=67.03 E-value=4.4 Score=35.78 Aligned_cols=46 Identities=15% Similarity=0.116 Sum_probs=37.1
Q ss_pred HHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCC
Q 002040 704 LLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 704 l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
|...+..+....+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 45 l~~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 45 LREKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp HHHHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred HHHHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4444444445568999999988889999999999999999999875
No 277
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.90 E-value=2.9 Score=40.71 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.|+-++++||+|+|||+.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466788999999999985
No 278
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.77 E-value=12 Score=45.70 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=54.7
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhh-------cCcEEEEeeCCCChHHHHHHHh--------c-CCeEEEeCchhHHH
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKV-------MGVRCVPVYGGSGVAQQISELK--------R-GTEIVVCTPGRMID 603 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~-------~~~~~~~~~gg~~~~~~~~~l~--------~-~~~Iiv~Tp~~L~~ 603 (976)
+..+||.||++.-+..++..+...+.. .++.+..++|+.+..++...+. . ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 458999999999999998888764322 4788999999998777654332 2 358999993
Q ss_pred HHHhcCCcccccCCceEEEe
Q 002040 604 ILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 604 ~l~~~~~~~~~l~~~~~vVl 623 (976)
.+..+ .++..+.+||-
T Consensus 378 iae~G----idIp~v~~VId 393 (773)
T 2xau_A 378 IAETS----LTIDGIVYVVD 393 (773)
T ss_dssp HHHHT----CCCTTEEEEEE
T ss_pred HHHhC----cCcCCeEEEEe
Confidence 34433 57778887774
No 279
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=66.76 E-value=16 Score=42.14 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=16.5
Q ss_pred cCCCEEEEcCCCCchHHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l 523 (976)
.|.-++|.|++|+|||+.+..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~ 300 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSR 300 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH
Confidence 456788899999999986443
No 280
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=66.59 E-value=5.6 Score=51.09 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=31.9
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDI 560 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~ 560 (976)
-||.|..|||||.+.+--+...+... ..+..+|+|||.. +..++...+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~-----~~~~~il~lVP~q-~TFt~~~rl 51 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA-----PFGKPIIFLVPDQ-MTFLMEYEL 51 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC-----TTSSCEEEECCGG-GHHHHHHHH
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC-----CCCCcEEEEecCc-ccHHHHHHH
Confidence 37889999999998665565555542 1356789999976 334433333
No 281
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=66.15 E-value=41 Score=36.49 Aligned_cols=17 Identities=24% Similarity=0.134 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.++++|.+|+|||+.+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47788999999998643
No 282
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=65.78 E-value=8.9 Score=38.34 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=48.4
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC--------CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----cccc-cCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH--------GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR-GLD 779 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~--------~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~~-GlD 779 (976)
..++||.|++..-+..++..+... ++.+..++|+.+..... ..+ .+...|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 458999999999998888877653 57788889987543221 111 24578999995 2222 356
Q ss_pred CCCCcEEEE
Q 002040 780 VKELELVIN 788 (976)
Q Consensus 780 i~~v~~VI~ 788 (976)
+..+.+||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 677777774
No 283
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=65.76 E-value=3.7 Score=45.17 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=17.6
Q ss_pred HhcCCCEEEEcCCCCchHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~ 520 (976)
+..|..++++|+||||||+.
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 284
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=65.58 E-value=3.4 Score=40.94 Aligned_cols=20 Identities=20% Similarity=-0.011 Sum_probs=16.8
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+..++++|++|||||+++-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 56789999999999998643
No 285
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=64.97 E-value=22 Score=38.25 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=16.4
Q ss_pred HhcCC--CEEEEcCCCCchHHHHH
Q 002040 501 IMSGR--DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 501 il~g~--d~i~~a~TGsGKT~~~~ 522 (976)
+..|+ ++++.||+|+|||+.+.
T Consensus 41 i~~g~~~~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 41 VDEGKLPHLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp HHTTCCCCEEEECSSSSSHHHHHH
T ss_pred HhcCCCceEEEECCCCCCHHHHHH
Confidence 33454 38999999999997643
No 286
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=64.86 E-value=2.7 Score=40.54 Aligned_cols=18 Identities=22% Similarity=0.104 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+.-++++|++|||||+++
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999863
No 287
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.54 E-value=9.9 Score=52.50 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHH----HHHHHhcCCCEEEEcCCCCchHHHHH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQ----ALPVIMSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~----~i~~il~g~d~i~~a~TGsGKT~~~~ 522 (976)
+...+.+.+...++. +++.+.. ....+...+.++++||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 344566677777875 5555532 22334467789999999999998743
No 288
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.33 E-value=5.1 Score=41.01 Aligned_cols=71 Identities=21% Similarity=0.374 Sum_probs=48.2
Q ss_pred CcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----cccc---cCCCCC
Q 002040 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAAR---GLDVKE 782 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~~---GlDi~~ 782 (976)
.++||.++++.-+..++..+... ++.+..++|+..... .......+...|||+|. .+.. .+++..
T Consensus 99 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 99 FRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 47999999999999998888765 677777776532211 11122356678999994 1112 477888
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 176 ~~~lVi 181 (245)
T 3dkp_A 176 VEWLVV 181 (245)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 888874
No 289
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=64.19 E-value=6.2 Score=44.65 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=43.9
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~ 618 (976)
+.++||+||++.-|..++..+.. .++.+.+++|.. ....+..+.. ..+|+|||. .+... .++. +
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~----~~~~v~~lhg~~-R~~~~~~F~~g~~~vLVaT~-----v~e~G----iDip-v 241 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRK----AGKSVVVLNRKT-FEREYPTIKQKKPDFILATD-----IAEMG----ANLC-V 241 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----TTCCEEECCSSS-CC--------CCCSEEEESS-----STTCC----TTCC-C
T ss_pred CCCEEEEeCCHHHHHHHHHHHHH----cCCCEEEecchh-HHHHHhhhcCCCceEEEECC-----hhhee----eccC-c
Confidence 45799999999999988887776 378888888843 3333444444 469999994 23222 5677 7
Q ss_pred eEEE
Q 002040 619 TYLV 622 (976)
Q Consensus 619 ~~vV 622 (976)
++||
T Consensus 242 ~~VI 245 (440)
T 1yks_A 242 ERVL 245 (440)
T ss_dssp SEEE
T ss_pred eEEE
Confidence 7776
No 290
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=64.03 E-value=2.7 Score=40.77 Aligned_cols=21 Identities=24% Similarity=0.091 Sum_probs=17.4
Q ss_pred hcCCCEEEEcCCCCchHHHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~~~ 522 (976)
+.+..++++|++|||||+++-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 456789999999999998643
No 291
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=63.84 E-value=11 Score=41.30 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
....+++.||+|+|||+++
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999853
No 292
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=63.51 E-value=5.8 Score=52.18 Aligned_cols=93 Identities=19% Similarity=0.231 Sum_probs=52.6
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ 583 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~ 583 (976)
|+-+.+.+|.|||||+.+ ++++....+ .|..|+++.+-.+|.... +.+ +|+.+
T Consensus 1431 g~~iei~g~~~sGkttl~-~~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~----~Gv~~------------ 1483 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLT-LQVIAAAQR-------EGKTCAFIDAEHALDPIY---ARK----LGVDI------------ 1483 (1706)
T ss_dssp TSEEEEECSTTSSHHHHH-HHHHHHHHH-------TTCCEEEECTTSCCCHHH---HHH----TTCCG------------
T ss_pred CCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEEecCCCCCHHH---HHH----cCCCH------------
Confidence 466899999999999874 444444333 366788888766664432 333 44432
Q ss_pred HHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcccccc
Q 002040 584 ISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD 631 (976)
Q Consensus 584 ~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah~~~~ 631 (976)
.+++|.-|..--..|..-. .+..-..+++||||-+-.+..
T Consensus 1484 -------~~l~~~~p~~~e~~l~~~~-~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1484 -------DNLLCSQPDTGEQALEICD-ALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp -------GGCEEECCSSHHHHHHHHH-HHHHHTCCSEEEESCSTTCCC
T ss_pred -------HHeEEeCCCcHHHHHHHHH-HHHHcCCCCEEEEccHHhCCc
Confidence 1255555543222221100 001123478999999887653
No 293
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=63.21 E-value=4.2 Score=40.38 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=14.6
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.|+-++++||+|+|||+.
T Consensus 3 ~g~~i~lvGpsGaGKSTL 20 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTL 20 (198)
T ss_dssp --CCEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999985
No 294
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=63.03 E-value=4.5 Score=43.60 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=19.3
Q ss_pred HHHHHhcCCCEEEEcCCCCchHHH
Q 002040 497 ALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 497 ~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
++..+..+.++++.|++|+|||..
T Consensus 39 l~~~l~~~~~vll~G~pGtGKT~l 62 (331)
T 2r44_A 39 LLIGICTGGHILLEGVPGLAKTLS 62 (331)
T ss_dssp HHHHHHHTCCEEEESCCCHHHHHH
T ss_pred HHHHHHcCCeEEEECCCCCcHHHH
Confidence 334455688999999999999975
No 295
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=62.62 E-value=3.9 Score=40.46 Aligned_cols=21 Identities=19% Similarity=0.060 Sum_probs=16.6
Q ss_pred HhcCCCEEEEcCCCCchHHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~ 521 (976)
+..|.-++++|++|||||+.+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 345777889999999999853
No 296
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=62.47 E-value=3.9 Score=44.28 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
.-++|+||||+|||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458889999999997633
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=62.39 E-value=4.2 Score=39.53 Aligned_cols=19 Identities=21% Similarity=0.074 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+..++++|++|||||+++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999998644
No 298
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=62.30 E-value=6 Score=41.05 Aligned_cols=19 Identities=21% Similarity=0.378 Sum_probs=16.4
Q ss_pred hcCCCEEEEcCCCCchHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~ 520 (976)
..+..++++|++|+|||..
T Consensus 27 ~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp TSCSCEEEECCTTSCHHHH
T ss_pred CCCCCEEEECCCCCcHHHH
Confidence 3567899999999999975
No 299
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.15 E-value=18 Score=39.85 Aligned_cols=73 Identities=12% Similarity=0.295 Sum_probs=52.9
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----ccc-ccCCCCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAA-RGLDVKE 782 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~-~GlDi~~ 782 (976)
...++||.|+++.-+..++..+... ++.+..++|+...... +..+..+...|+|+|. .+. ..+.+..
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~ 183 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKY 183 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHHHHHHHTSSCSTT
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 4568999999999998888888764 6778888888765443 4455667889999994 222 2356667
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 184 ~~~vVi 189 (414)
T 3eiq_A 184 IKMFVL 189 (414)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777774
No 300
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=61.96 E-value=14 Score=44.65 Aligned_cols=72 Identities=4% Similarity=-0.093 Sum_probs=51.0
Q ss_pred hhcCCcEEEEecCHHHHHHHHHHHH----HCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-c-----ccc---
Q 002040 711 WYEKGKILIFVHSQEKCDALFRDLL----KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----ARG--- 777 (976)
Q Consensus 711 ~~~~~kvLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-~-----~~G--- 777 (976)
...+.+++|.|+|..-|...+..+. ..|+.+.++.|+++...+.... .+.|+|+|+- + ..+
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhc
Confidence 3445689999999998877666554 3589999999999976554432 3789999962 1 122
Q ss_pred ----CCCCCCcEEEE
Q 002040 778 ----LDVKELELVIN 788 (976)
Q Consensus 778 ----lDi~~v~~VI~ 788 (976)
+...++.++|.
T Consensus 186 ~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 186 SPEERVQRKLHYALV 200 (853)
T ss_dssp SGGGCCCCSCCEEEE
T ss_pred cHhHhcccCCcEEEE
Confidence 45567777774
No 301
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=61.75 E-value=4.4 Score=40.52 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.|.-++++||+|+|||+.+
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566888999999999853
No 302
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.55 E-value=3.5 Score=39.31 Aligned_cols=17 Identities=24% Similarity=0.090 Sum_probs=13.8
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
-++++|++|||||+++-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36788999999998643
No 303
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=61.48 E-value=64 Score=30.86 Aligned_cols=85 Identities=19% Similarity=0.268 Sum_probs=59.2
Q ss_pred EecCcchHHHHHHHHHHhh-hcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEec
Q 002040 693 EVRPESDRFLRLLELLGEW-YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIAT 771 (976)
Q Consensus 693 ~~~~~~~k~~~l~~~l~~~-~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT 771 (976)
.+.....-...+...|... ...+.+.|.|.+...+..+...|...|+++..+.+... .| .-.|.|+|
T Consensus 39 ~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~~---~~~v~v~t 106 (174)
T 3dmn_A 39 VTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------RL---APGVIVVP 106 (174)
T ss_dssp EESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------CC---CSSEEEEE
T ss_pred EeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------cc---CCCeEEEE
Confidence 3334344445555555431 12467999999999999999999999999887776542 12 23699999
Q ss_pred CcccccCCCCCCcEEEEeCCC
Q 002040 772 SVAARGLDVKELELVINFDAP 792 (976)
Q Consensus 772 ~v~~~GlDi~~v~~VI~~d~p 792 (976)
--.+-|+-+ +.||.+++.
T Consensus 107 ~~~~KGlEf---~~V~~~~~~ 124 (174)
T 3dmn_A 107 SFLAKGLEF---DAVIVWNAN 124 (174)
T ss_dssp GGGCTTCCE---EEEEEETCB
T ss_pred ccccCCcCC---CEEEEecCC
Confidence 999999886 566666653
No 304
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=61.43 E-value=7.8 Score=50.32 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=29.8
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEecc
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSAT 657 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~SAT 657 (976)
+++-.+||||||-.-+|..-...+...+..+..++-+|+.+--
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHR 1275 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHR 1275 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 4566789999998777766666677777766666655555543
No 305
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=61.30 E-value=6.9 Score=41.69 Aligned_cols=67 Identities=9% Similarity=-0.001 Sum_probs=47.4
Q ss_pred CcEEEEecCHHHHHHHHHHHHHC-----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcc------c-ccCCCCC
Q 002040 715 GKILIFVHSQEKCDALFRDLLKH-----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA------A-RGLDVKE 782 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~-----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~------~-~GlDi~~ 782 (976)
.++||.|+++.-+..++..+... ++.+..++|+...... .....+|||+|+-. . ..+++..
T Consensus 163 ~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 37999999999999988877664 4667777776653211 13456899999621 1 3577888
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 236 l~~lVl 241 (300)
T 3fmo_B 236 IKVFVL 241 (300)
T ss_dssp CSEEEE
T ss_pred ceEEEE
Confidence 888885
No 306
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=61.14 E-value=3.8 Score=43.83 Aligned_cols=17 Identities=29% Similarity=0.134 Sum_probs=13.8
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
.-++|+||||||||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 34678899999999753
No 307
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=61.01 E-value=4.3 Score=40.10 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.|.-+.++||+|||||+.
T Consensus 6 ~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 566788899999999985
No 308
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=60.82 E-value=4.5 Score=46.56 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCCEEEEcCCCCchHHH
Q 002040 495 AQALPVIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 495 ~~~i~~il~g~d~i~~a~TGsGKT~~ 520 (976)
..++..+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 44556667889999999999999975
No 309
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=60.51 E-value=14 Score=38.38 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCCCcHHHH-HHHHHHhcCC-----CEEEEcCCCCchHHHHH
Q 002040 477 KIMETIRKLNYEKPMPIQA-QALPVIMSGR-----DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 477 ~l~~~l~~~~~~~p~~~Q~-~~i~~il~g~-----d~i~~a~TGsGKT~~~~ 522 (976)
.+.+.|+-.||. |++. .++..++.++ .+++.||.|+|||+.+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 566777777766 5543 2344455443 48889999999998644
No 310
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=59.90 E-value=4.9 Score=39.11 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+.-++++|++|||||++.
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3566889999999999863
No 311
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.79 E-value=3.1 Score=42.98 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=29.6
Q ss_pred CcccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCCchHHH
Q 002040 464 KPIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 464 ~pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il--~g~d~i~~a~TGsGKT~~ 520 (976)
.|-.+|.++.....+...+...-.. . -...++..+- -.+.++++||+|+|||+.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHL 65 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHH
Confidence 3456788877666665555432110 0 0011222211 123489999999999975
No 312
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=59.77 E-value=1.3e+02 Score=30.73 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=85.3
Q ss_pred CeEEEEccC--HHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHH----hcCCeEEEeCch---hHHHHHHhcCCc
Q 002040 541 PVGLIMAPT--RELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISEL----KRGTEIVVCTPG---RMIDILCTSGGK 611 (976)
Q Consensus 541 ~~vLIl~Pt--r~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~Iiv~Tp~---~L~~~l~~~~~~ 611 (976)
..+.|++|. .....++..-+...+...|+.+.++..+.....+...+ ..+++-||..|. .....+..
T Consensus 6 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~---- 81 (291)
T 3l49_A 6 KTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK---- 81 (291)
T ss_dssp CEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH----
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH----
Confidence 455666663 23445566667777777888887776665544433222 235654444332 22222211
Q ss_pred ccccCCceEEEecCccc----ccccC----CchHHHHHHHhcCCCCcEEEEeccCcHHH-----HHHHHHHcCCC-eEEE
Q 002040 612 ITNLRRVTYLVMDEADR----MFDMG----FEPQITRIVQNIRPDRQTVLFSATFPRQV-----EILARKVLNKP-VEIQ 677 (976)
Q Consensus 612 ~~~l~~~~~vVlDEah~----~~~~~----f~~~i~~il~~~~~~~q~i~~SAT~~~~~-----~~l~~~~l~~~-~~i~ 677 (976)
..-..+-+|++|-... ....+ -......++..+....++.+++....... .-+...+-..+ +.+
T Consensus 82 -~~~~~iPvV~~~~~~~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~- 159 (291)
T 3l49_A 82 -INDAGIPLFTVDTATPHAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQMKYVLEAFPDVKI- 159 (291)
T ss_dssp -HHHTTCCEEEESCCCTTCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHHHHHHHHTCTTEEE-
T ss_pred -HHHCCCcEEEecCCCCCcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHCCCCEE-
Confidence 0111234455543221 00001 11223344554456667888876533221 11122221221 111
Q ss_pred eCCcccccCCceEEEEecC--cchHHHHHHHHHHhhhc--CCcEEEEecCHHHHHHHHHHHHHCCC
Q 002040 678 VGGRSVVNKDITQLVEVRP--ESDRFLRLLELLGEWYE--KGKILIFVHSQEKCDALFRDLLKHGY 739 (976)
Q Consensus 678 ~~~~~~~~~~i~q~~~~~~--~~~k~~~l~~~l~~~~~--~~kvLIF~~s~~~~~~l~~~L~~~~~ 739 (976)
+. ... +.... ...-...+..+|... + .....|||.+-..+..+...|...|+
T Consensus 160 ~~-~~~--------~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 160 IE-PEL--------RDVIPNTIQSAYSNVTDMLTKY-PNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp CS-SCB--------CCCSSSHHHHHHHHHHHHHHHC-CSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred Ee-eec--------cCCCCCCHHHHHHHHHHHHHhC-CCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 00 000 00011 112223344444432 2 15678899999999999999999887
No 313
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=59.48 E-value=4.2 Score=40.48 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.3
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.++-++++|+||+|||..+
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3556899999999999753
No 314
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=59.23 E-value=5 Score=39.92 Aligned_cols=19 Identities=11% Similarity=0.295 Sum_probs=16.3
Q ss_pred hcCCCEEEEcCCCCchHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~ 520 (976)
+.|+-++++||+|+|||+.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL 35 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHI 35 (197)
T ss_dssp CSCCEEEEECCTTSSHHHH
T ss_pred CCCCEEEEECcCCCCHHHH
Confidence 3677789999999999985
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=59.20 E-value=4.8 Score=43.62 Aligned_cols=20 Identities=45% Similarity=0.554 Sum_probs=17.3
Q ss_pred HhcCCCEEEEcCCCCchHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~ 520 (976)
+..|..++++|+||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 44788999999999999974
No 316
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=59.19 E-value=6 Score=37.83 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+..++++|++|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467899999999999853
No 317
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=58.99 E-value=4.9 Score=41.67 Aligned_cols=16 Identities=31% Similarity=0.146 Sum_probs=13.4
Q ss_pred EEEEcCCCCchHHHHH
Q 002040 507 CIGVAKTGSGKTLAFV 522 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~ 522 (976)
++|+|+||||||+.+.
T Consensus 4 i~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCcCHHHHHH
Confidence 6789999999998643
No 318
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=58.92 E-value=14 Score=42.68 Aligned_cols=71 Identities=21% Similarity=0.326 Sum_probs=50.1
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----cccc-C-CCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARG-L-DVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~~~G-l-Di~~ 782 (976)
.+++||+||++.-+..++..|... ++.+..+||+.+...+...+. +...|||+|.- +..+ + .+..
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 668999999999888877777654 899999999986554432221 24789999951 1222 3 5667
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788875
No 319
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=58.72 E-value=11 Score=37.29 Aligned_cols=55 Identities=16% Similarity=0.387 Sum_probs=34.4
Q ss_pred CCcEEEEecCHHHHHH-HHHHHHH---CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC
Q 002040 714 KGKILIFVHSQEKCDA-LFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~-l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~ 772 (976)
.+++||+|++..-+.. +...+.. .++.+..++|+.........+. +...|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 5689999999988777 5544443 3678888998765332211111 2467899885
No 320
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=58.62 E-value=5 Score=42.83 Aligned_cols=16 Identities=31% Similarity=0.200 Sum_probs=13.3
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-++|+||||||||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 3678899999999753
No 321
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=58.50 E-value=10 Score=40.38 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
....+++.|++|+|||+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELV 41 (304)
T ss_dssp TTSCEEEESCTTSCHHHH
T ss_pred CCCcEEEECCCCchHHHH
Confidence 467899999999999975
No 322
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=58.45 E-value=17 Score=46.67 Aligned_cols=60 Identities=18% Similarity=0.148 Sum_probs=43.9
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHhcCCC---C-CCCCCCeEEEEccCHHHHHHHHHHHHHHHh
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIKDQPP---V-AAGDGPVGLIMAPTRELVQQIHSDIRKFAK 565 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~~~~~---~-~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~ 565 (976)
..+|.|.-|||||.+...-++..|..... . ..-.-..+|+|+=|+..|..+...|.....
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 45999999999999877777777764210 0 001234799999999999999988876543
No 323
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=58.42 E-value=21 Score=43.35 Aligned_cols=71 Identities=4% Similarity=0.002 Sum_probs=51.4
Q ss_pred hcCCcEEEEecCHHHHHHHHHHHH----HCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-cc-----c------
Q 002040 712 YEKGKILIFVHSQEKCDALFRDLL----KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-VA-----A------ 775 (976)
Q Consensus 712 ~~~~kvLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-v~-----~------ 775 (976)
..+..++|.|+|..-|...+..+. ..|+.+.++.|+++...+.... .++|+|+|+ -+ .
T Consensus 122 L~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~ 195 (844)
T 1tf5_A 122 LTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLY 195 (844)
T ss_dssp TTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcc
Confidence 345689999999998877766554 3599999999999987665442 378999996 11 1
Q ss_pred -ccCCCCCCcEEEE
Q 002040 776 -RGLDVKELELVIN 788 (976)
Q Consensus 776 -~GlDi~~v~~VI~ 788 (976)
..+.+..+.++|.
T Consensus 196 ~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 196 KEQMVQRPLHFAVI 209 (844)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred hhhhcccCCCEEEE
Confidence 1356677777764
No 324
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=58.30 E-value=3.5 Score=40.35 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.8
Q ss_pred hcCCCEEEEcCCCCchHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~ 520 (976)
..|.-++++|++|||||+.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566788999999999985
No 325
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=58.20 E-value=2.1 Score=45.10 Aligned_cols=53 Identities=23% Similarity=0.379 Sum_probs=25.3
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHH-HHHHHHHh--cCCCEEEEcCCCCchHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQ-AQALPVIM--SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q-~~~i~~il--~g~d~i~~a~TGsGKT~~ 520 (976)
|-.+|.+.+....+.+.|...=. .|+. ..++..+- -.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 44678888776666666553110 1111 11222111 123499999999999975
No 326
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=58.18 E-value=4.8 Score=39.97 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=17.2
Q ss_pred HhcCCCEEEEcCCCCchHHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~ 521 (976)
+..+.-++++|++|||||+.+
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346778999999999999853
No 327
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=58.17 E-value=9.5 Score=38.72 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=17.7
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
++++.++.|+|||+.++..+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 478889999999987555444443
No 328
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=57.81 E-value=16 Score=35.82 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=18.4
Q ss_pred CeEEEeCchhHHHHHHhcCCcccccCCceEEEecCcc
Q 002040 591 TEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 591 ~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEah 627 (976)
.+++-+.+..|...+..- ...+++||||=.-
T Consensus 55 ~~~~~~~~~~l~~~l~~l------~~~yD~viiD~~~ 85 (206)
T 4dzz_A 55 FDVFTAASEKDVYGIRKD------LADYDFAIVDGAG 85 (206)
T ss_dssp SEEEECCSHHHHHTHHHH------TTTSSEEEEECCS
T ss_pred CcEEecCcHHHHHHHHHh------cCCCCEEEEECCC
Confidence 456655556665555431 2347889988654
No 329
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=57.67 E-value=6.4 Score=39.69 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=16.1
Q ss_pred hcCCCEEEEcCCCCchHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~ 520 (976)
..|.-+.++||+|+|||+.
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999975
No 330
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=57.31 E-value=7 Score=42.75 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 456778888874 44589999999763
No 331
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=57.29 E-value=25 Score=42.98 Aligned_cols=56 Identities=7% Similarity=-0.003 Sum_probs=43.4
Q ss_pred hhcCCcEEEEecCHHHHHHHHHHHH----HCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC
Q 002040 711 WYEKGKILIFVHSQEKCDALFRDLL----KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (976)
Q Consensus 711 ~~~~~kvLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~ 772 (976)
...+.+++|.|+|..-|...+..+. ..|+.|.++.|+++...+.... .++|+|+|+
T Consensus 117 aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 117 ALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp HTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred HHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 3445689999999987777665554 4599999999999977666553 378999996
No 332
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=57.26 E-value=7 Score=40.45 Aligned_cols=22 Identities=36% Similarity=0.360 Sum_probs=18.3
Q ss_pred HhcCCCEEEEcCCCCchHHHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+.|..++++|++|||||+++-
T Consensus 45 ~l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 45 YLNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HHTTCCEEEECSTTSCHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHH
Confidence 3458999999999999998643
No 333
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=57.19 E-value=21 Score=43.73 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=47.7
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----cccc-C-CCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARG-L-DVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~~~G-l-Di~~ 782 (976)
.+++||+||+..-+..+...|... ++.+..+||+.+...+...+. +...|||+|.- +..+ + .+..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888887777664 899999999987655432221 25789999951 1222 3 5666
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788875
No 334
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=56.84 E-value=6.6 Score=38.34 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.7
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
+-++++||+|+|||+.
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578899999999985
No 335
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=56.48 E-value=7.9 Score=43.07 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=19.7
Q ss_pred HHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 497 ~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.+..++.|.++ +..|.||||||.++
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 67778888874 44589999999874
No 336
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=56.42 E-value=6.2 Score=38.44 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+..++++|++|||||++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999864
No 337
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=56.29 E-value=4.6 Score=39.23 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.|..++++|++|||||+++-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568899999999998643
No 338
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.04 E-value=8.1 Score=41.65 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHHHHHhcCCC--EEEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRD--CIGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d--~i~~a~TGsGKT~~~ 521 (976)
..+..++.|.+ ++..|.||||||.++
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34566778887 455589999999874
No 339
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=55.64 E-value=6.1 Score=51.35 Aligned_cols=41 Identities=22% Similarity=0.374 Sum_probs=29.1
Q ss_pred cCCceEEEecCcccccccCCchHHHHHHHhcCCCCcEEEEe
Q 002040 615 LRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFS 655 (976)
Q Consensus 615 l~~~~~vVlDEah~~~~~~f~~~i~~il~~~~~~~q~i~~S 655 (976)
+++-.++|+||+-.-+|..-...+...+..+..++-+|+.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 56678999999998888776777777776665554444443
No 340
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=55.50 E-value=7.5 Score=42.25 Aligned_cols=26 Identities=23% Similarity=0.621 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.+|..++.|.++ +..|.||||||.++
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 345667788774 55589999999873
No 341
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=55.36 E-value=4 Score=42.91 Aligned_cols=53 Identities=15% Similarity=0.180 Sum_probs=29.4
Q ss_pred cccccccCCCCHHHHHHHHHcCCCCCcHHHHHHHHHHh--cCCCEEEEcCCCCchHHH
Q 002040 465 PIKTWHQTGLTSKIMETIRKLNYEKPMPIQAQALPVIM--SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 465 pi~~~~~~~l~~~l~~~l~~~~~~~p~~~Q~~~i~~il--~g~d~i~~a~TGsGKT~~ 520 (976)
|-.+|.++.....+...+..+-.. .. ...++..+- -.+.++++||+|+|||+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~~-~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--LK-NPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--HH-CHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--HH-CHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 456788877766666555432110 00 011222111 123489999999999975
No 342
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.07 E-value=5.3 Score=44.12 Aligned_cols=19 Identities=26% Similarity=0.179 Sum_probs=16.0
Q ss_pred hcCCCEEEEcCCCCchHHH
Q 002040 502 MSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 502 l~g~d~i~~a~TGsGKT~~ 520 (976)
..|..++++|+||||||+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566789999999999985
No 343
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=55.06 E-value=7.5 Score=43.21 Aligned_cols=26 Identities=35% Similarity=0.640 Sum_probs=19.2
Q ss_pred HHHHHHhcCCC--EEEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRD--CIGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d--~i~~a~TGsGKT~~~ 521 (976)
.++..++.|.+ ++..|.||||||.++
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 35666778876 444589999999874
No 344
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=54.74 E-value=11 Score=41.12 Aligned_cols=38 Identities=18% Similarity=0.135 Sum_probs=24.7
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
.|.-+++.|++|+|||+.++..+. .+... +..|+++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~-~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIA-AAQRE-------GKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-HHHHT-------TCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHHC-------CCeEEEEeC
Confidence 356788999999999986544443 33321 345677665
No 345
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=54.74 E-value=11 Score=41.19 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=23.7
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
|.-+++.|++|+|||+.++..+... ... +..|+++.-
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~-~~~-------g~~vlyi~~ 97 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANA-QAA-------GGIAAFIDA 97 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH-HHT-------TCCEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HhC-------CCeEEEEEC
Confidence 4668899999999998644444333 321 345666653
No 346
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=54.73 E-value=1.4e+02 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.160 Sum_probs=22.1
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKHGYP 740 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~~~~ 740 (976)
..+..|||.+-..+..+...|...|+.
T Consensus 191 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 191 QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 356788999999998999999888764
No 347
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=54.55 E-value=6.7 Score=37.30 Aligned_cols=17 Identities=12% Similarity=-0.257 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
-++++|++|||||+++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998643
No 348
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=54.48 E-value=6.4 Score=42.37 Aligned_cols=16 Identities=25% Similarity=0.119 Sum_probs=13.7
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
.++|+|+||||||..+
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999753
No 349
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=54.37 E-value=4.9 Score=38.78 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=15.8
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.|.-+.++|++|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35567889999999998644
No 350
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=54.19 E-value=8.9 Score=42.02 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 345667788774 44589999999873
No 351
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=54.07 E-value=9 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=19.0
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
..+..++.|.++ +..|.||||||.++
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 345667788774 44589999999863
No 352
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=54.05 E-value=7.1 Score=38.84 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=16.3
Q ss_pred HHhcCCCEEEEcCCCCchHHH
Q 002040 500 VIMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 500 ~il~g~d~i~~a~TGsGKT~~ 520 (976)
.+..|.-+.++||+|||||+.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 566788899999999999985
No 353
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.03 E-value=9.1 Score=41.34 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
..+..++.|.++ +..|.||||||.++
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 356677888874 45589999999763
No 354
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=53.87 E-value=12 Score=47.55 Aligned_cols=66 Identities=18% Similarity=0.178 Sum_probs=50.3
Q ss_pred hcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----ccccc-CCCCCCcE
Q 002040 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-LDVKELEL 785 (976)
Q Consensus 712 ~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~~G-lDi~~v~~ 785 (976)
..++++||.+|++.-+...+..|......+..++|+++ .++...|||+|. .+..+ +.+..+.+
T Consensus 225 ~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~l 293 (1108)
T 3l9o_A 225 KNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAW 293 (1108)
T ss_dssp HTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEE
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCE
Confidence 34678999999999999999999886668999999886 346788999993 33333 33556677
Q ss_pred EEE
Q 002040 786 VIN 788 (976)
Q Consensus 786 VI~ 788 (976)
||+
T Consensus 294 VVI 296 (1108)
T 3l9o_A 294 VIF 296 (1108)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 355
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=53.86 E-value=8.2 Score=42.36 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 355667788874 44589999999763
No 356
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=53.83 E-value=13 Score=35.88 Aligned_cols=24 Identities=21% Similarity=-0.018 Sum_probs=16.6
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
-+.++|+.|||||+. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367889999999975 444444443
No 357
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=53.56 E-value=7.1 Score=37.44 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-++++|++|||||+++
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3688899999999864
No 358
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=53.54 E-value=8.8 Score=42.14 Aligned_cols=26 Identities=23% Similarity=0.461 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 345667788774 44589999999763
No 359
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=53.50 E-value=13 Score=42.74 Aligned_cols=28 Identities=18% Similarity=0.193 Sum_probs=19.6
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
.+.+++|+|.||||||.+.-..++..+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999864333333333
No 360
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=53.38 E-value=17 Score=43.58 Aligned_cols=70 Identities=20% Similarity=0.307 Sum_probs=49.4
Q ss_pred CcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-----ccccc-C-CCCCC
Q 002040 715 GKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS-----VAARG-L-DVKEL 783 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-----v~~~G-l-Di~~v 783 (976)
+++||+++++.-+......|... ++.+..++|+.+.......+. ...+|||+|. .+..| + .+..+
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIV----ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHH----HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhc----cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 78999999999888888777664 789999999886433222221 2478999995 22223 3 56677
Q ss_pred cEEEE
Q 002040 784 ELVIN 788 (976)
Q Consensus 784 ~~VI~ 788 (976)
.+||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88875
No 361
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=53.34 E-value=19 Score=29.82 Aligned_cols=36 Identities=11% Similarity=0.237 Sum_probs=28.8
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCC-ceeccCCCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKD 749 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 749 (976)
...+++|||.+-..+...+..|...|+. +..+ |++.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999988888999999999996 4444 7754
No 362
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.23 E-value=9.4 Score=41.50 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEee
Confidence 345667788874 45589999999874
No 363
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=53.18 E-value=9 Score=41.71 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 346667788774 44589999999764
No 364
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=53.17 E-value=7.5 Score=38.39 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=15.9
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.|.-++++|++|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4667889999999999853
No 365
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=53.14 E-value=9 Score=41.80 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=18.6
Q ss_pred HHHHHhcCCC--EEEEcCCCCchHHHH
Q 002040 497 ALPVIMSGRD--CIGVAKTGSGKTLAF 521 (976)
Q Consensus 497 ~i~~il~g~d--~i~~a~TGsGKT~~~ 521 (976)
++..++.|.+ ++..|.||||||.++
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 4556778877 445589999999763
No 366
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=53.08 E-value=14 Score=36.88 Aligned_cols=49 Identities=14% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHhcC----CCEEEEcCCCCchHHHHHHHHHHH
Q 002040 477 KIMETIRKLNYEKPMPIQAQALPVIMSG----RDCIGVAKTGSGKTLAFVLPMLRH 528 (976)
Q Consensus 477 ~l~~~l~~~~~~~p~~~Q~~~i~~il~g----~d~i~~a~TGsGKT~~~~l~il~~ 528 (976)
.|.+.|.-.+ ..+..+ ..++..++.+ +.+|+.||.|+|||.. +..++..
T Consensus 29 ~I~~~l~yq~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~-a~ala~~ 81 (212)
T 1tue_A 29 PIVQFLRYQQ-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYF-GMSFIHF 81 (212)
T ss_dssp HHHHHHHHTT-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHH-HHHHHHH
T ss_pred HHHHHHHHcC-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHH-HHHHHHH
Confidence 3444444333 334444 4445555544 3488899999999975 3444444
No 367
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=52.88 E-value=2.5e+02 Score=30.27 Aligned_cols=82 Identities=11% Similarity=0.054 Sum_probs=47.9
Q ss_pred CeEEEEccC-H---HHHHHHHHHHHHHHhhcC--cEEEEeeCCCChHH---HHH-HHhcCCeEEEeCchhHHHHHHhcCC
Q 002040 541 PVGLIMAPT-R---ELVQQIHSDIRKFAKVMG--VRCVPVYGGSGVAQ---QIS-ELKRGTEIVVCTPGRMIDILCTSGG 610 (976)
Q Consensus 541 ~~vLIl~Pt-r---~La~Q~~~~~~~~~~~~~--~~~~~~~gg~~~~~---~~~-~l~~~~~Iiv~Tp~~L~~~l~~~~~ 610 (976)
.++.+|+|. . ..-..++.-+..+...+| +.+..+........ .+. ....++++||++...+.+.+..-.
T Consensus 27 ~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g~~~~~~~~~vA- 105 (356)
T 3s99_A 27 LKVGFIYIGPPGDFGWTYQHDQARKELVEALGDKVETTFLENVAEGADAERSIKRIARAGNKLIFTTSFGYMDPTVKVA- 105 (356)
T ss_dssp EEEEEECSSCGGGSSHHHHHHHHHHHHHHHHTTTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECSGGGHHHHHHHH-
T ss_pred CEEEEEEccCCCchhHHHHHHHHHHHHHHHhCCceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH-
Confidence 345556563 2 355556677777777788 77665544332211 122 234589999999776666553321
Q ss_pred cccccCCceEEEecC
Q 002040 611 KITNLRRVTYLVMDE 625 (976)
Q Consensus 611 ~~~~l~~~~~vVlDE 625 (976)
....++.++++|-
T Consensus 106 --~~~Pdv~fv~id~ 118 (356)
T 3s99_A 106 --KKFPDVKFEHATG 118 (356)
T ss_dssp --TTCTTSEEEEESC
T ss_pred --HHCCCCEEEEEec
Confidence 2334677888875
No 368
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=52.71 E-value=9.2 Score=41.77 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 456677888874 44589999999763
No 369
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=52.65 E-value=11 Score=42.81 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=15.8
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
++.+|+.||+|+|||+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3579999999999997643
No 370
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=52.64 E-value=6.6 Score=37.69 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
|..++++|++|||||+.+
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999864
No 371
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=52.54 E-value=26 Score=42.62 Aligned_cols=71 Identities=8% Similarity=-0.042 Sum_probs=50.8
Q ss_pred hcCCcEEEEecCHHHHHHHHHHHH----HCCCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-c-----c------
Q 002040 712 YEKGKILIFVHSQEKCDALFRDLL----KHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-A-----A------ 775 (976)
Q Consensus 712 ~~~~kvLIF~~s~~~~~~l~~~L~----~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-~-----~------ 775 (976)
..+.+++|.|+|..-|...+..+. ..|+.+.++.|+++...+.... .++|+++|+- + .
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~ 223 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHS 223 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhcc
Confidence 345689999999988776665554 4599999999999987665443 3789999961 1 1
Q ss_pred -ccCCCCCCcEEEE
Q 002040 776 -RGLDVKELELVIN 788 (976)
Q Consensus 776 -~GlDi~~v~~VI~ 788 (976)
..+....+.++|.
T Consensus 224 ~~~l~lr~l~~lIV 237 (922)
T 1nkt_A 224 LDDLVQRGHHYAIV 237 (922)
T ss_dssp GGGCCCCCCCEEEE
T ss_pred HhhhccCCCCEEEE
Confidence 1355667777764
No 372
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=52.53 E-value=65 Score=35.47 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHh---cCCCEEEEcCCCCchHHHHH
Q 002040 491 MPIQAQALPVIM---SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 491 ~~~Q~~~i~~il---~g~d~i~~a~TGsGKT~~~~ 522 (976)
...=..+|..++ .|+.+.++|++|+|||..+.
T Consensus 158 ~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 158 EDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp THHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHH
T ss_pred ccccceeeeeeeeecCCcEEEEecCCCCChhHHHH
Confidence 334445666655 68899999999999998643
No 373
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.44 E-value=9.4 Score=41.70 Aligned_cols=25 Identities=32% Similarity=0.662 Sum_probs=18.9
Q ss_pred HHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 497 ~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
++..++.|.++ +..|.||||||.++
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 55667788874 44589999999863
No 374
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=52.32 E-value=9.4 Score=41.68 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=19.5
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.+|..++.|.++ +..|.||||||.++
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 356667788874 44589999999874
No 375
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=52.18 E-value=8.1 Score=42.49 Aligned_cols=26 Identities=27% Similarity=0.640 Sum_probs=18.9
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCcceec
Confidence 445567788774 44589999999763
No 376
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=52.08 E-value=7.4 Score=42.19 Aligned_cols=16 Identities=38% Similarity=0.158 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-++|+|+||||||..+
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 4778899999999753
No 377
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=51.86 E-value=9.1 Score=42.66 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.+|..++.|.++ +..|.||||||.++
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 357778888874 44589999999873
No 378
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=51.71 E-value=8.7 Score=42.02 Aligned_cols=26 Identities=31% Similarity=0.675 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 355667788774 44589999999763
No 379
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=51.65 E-value=7.6 Score=42.31 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=19.8
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
..+..++.|.++ +..|.||||||.++
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 366777888874 44589999999874
No 380
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=51.29 E-value=13 Score=44.40 Aligned_cols=68 Identities=12% Similarity=0.202 Sum_probs=46.1
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~ 618 (976)
+.++||+||++.-+..++..+.. .++.+..++|. .....+..+.. ..+|+|||. .+... .++. +
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~----~g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~G----IDip-v 474 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQR----AGKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEMG----ANFG-A 474 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGTT----CCCC-C
T ss_pred CCCEEEEECCHHHHHHHHHHHHh----CCCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhcc----eeeC-C
Confidence 56899999999999888777665 47888888884 33333344443 468999993 33322 4566 6
Q ss_pred eEEE
Q 002040 619 TYLV 622 (976)
Q Consensus 619 ~~vV 622 (976)
.+||
T Consensus 475 ~~VI 478 (673)
T 2wv9_A 475 SRVI 478 (673)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 6665
No 381
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=51.22 E-value=7.2 Score=38.34 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
+-+||+||.|+|||+.
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999985
No 382
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=51.15 E-value=7 Score=38.02 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=15.2
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+.-++++|++|||||+++-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3457889999999998643
No 383
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=51.15 E-value=10 Score=33.29 Aligned_cols=44 Identities=14% Similarity=0.271 Sum_probs=34.6
Q ss_pred HHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCC-ceeccCCCCH
Q 002040 707 LLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQ 750 (976)
Q Consensus 707 ~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~ 750 (976)
.+.......+++|||.+-..+..++..|...|+. +..+.|++..
T Consensus 51 ~~~~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 51 FMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp HHHHSCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred HHHhcCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 3334344678999999988888899999999995 7788998753
No 384
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=51.01 E-value=15 Score=42.71 Aligned_cols=27 Identities=22% Similarity=0.221 Sum_probs=19.7
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHHHh
Q 002040 504 GRDCIGVAKTGSGKTLAFVLPMLRHIK 530 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l~il~~l~ 530 (976)
.-+++|.|.||||||.+.-..++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999864444444443
No 385
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.82 E-value=7.7 Score=42.22 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=18.8
Q ss_pred HHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 497 ~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.+..++.|.++ +..|.||||||.++
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 55666788774 44589999999874
No 386
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=50.71 E-value=14 Score=43.94 Aligned_cols=67 Identities=21% Similarity=0.321 Sum_probs=48.1
Q ss_pred CCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhcCCeEEEeCchhHHHHHHhcCCcccccCCc
Q 002040 539 DGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (976)
Q Consensus 539 ~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~ 618 (976)
.+.++||+|||+.-|..++..+.. .++.+..++|+....+. ...+..|+|||. .+... .++. +
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~----~g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerG----IDId-V 457 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSG----LGINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTG----YTGD-F 457 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHT----TTCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHH----CCCC-B
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHh----CCCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHcc----CCCC-C
Confidence 356899999999999888777765 57889999998876542 234569999994 33332 3454 7
Q ss_pred eEEE
Q 002040 619 TYLV 622 (976)
Q Consensus 619 ~~vV 622 (976)
.+||
T Consensus 458 ~~VI 461 (666)
T 3o8b_A 458 DSVI 461 (666)
T ss_dssp SEEE
T ss_pred cEEE
Confidence 7666
No 387
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=50.63 E-value=2.2e+02 Score=28.95 Aligned_cols=35 Identities=9% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCC
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY 739 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~ 739 (976)
.+..+|... .....|||.+-..+..+...|...|+
T Consensus 185 ~~~~~l~~~--~~~~ai~~~~d~~a~g~~~al~~~g~ 219 (293)
T 3l6u_A 185 VMRQVIDSG--IPFDAVYCHNDDIAMGVLEALKKAKI 219 (293)
T ss_dssp HHHHHHHTT--CCCSEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC--CCCCEEEECCchHHHHHHHHHHhCCC
Confidence 344444432 45678999999999999999998887
No 388
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=50.55 E-value=9.8 Score=41.95 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=19.7
Q ss_pred HHHHHHhcCCC--EEEEcCCCCchHHHHH
Q 002040 496 QALPVIMSGRD--CIGVAKTGSGKTLAFV 522 (976)
Q Consensus 496 ~~i~~il~g~d--~i~~a~TGsGKT~~~~ 522 (976)
.++..++.|.+ ++..|.||||||.++.
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 35666778876 4455899999998743
No 389
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=50.31 E-value=8.6 Score=42.20 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=19.1
Q ss_pred HHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 497 ~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.+..++.|.++ +..|.||||||.++
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 56677888874 44589999999763
No 390
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=50.23 E-value=9.9 Score=42.80 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=19.3
Q ss_pred HHHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 496 QALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 496 ~~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.++..++.|.++ +..|.||||||.++
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 456667788774 44589999999874
No 391
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=50.22 E-value=8.7 Score=37.47 Aligned_cols=20 Identities=25% Similarity=0.141 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+.-++++|++|||||+++-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45678899999999998643
No 392
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=50.05 E-value=9.7 Score=37.84 Aligned_cols=21 Identities=43% Similarity=0.556 Sum_probs=15.8
Q ss_pred CEEEEcCCCCchHHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPML 526 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il 526 (976)
-.++.|+.|||||+.++..++
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~ 27 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMA 27 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 468899999999986544333
No 393
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=49.88 E-value=9.1 Score=38.68 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=15.9
Q ss_pred HhcCCCEEEEcCCCCchHHH
Q 002040 501 IMSGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 501 il~g~d~i~~a~TGsGKT~~ 520 (976)
+..|.-++++||.|+|||+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44677789999999999985
No 394
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=49.86 E-value=20 Score=40.16 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=39.8
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTP 598 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp 598 (976)
+.++||+||++.-|..++..+... ++.+..++|+. ....+..+.. ..+|+|||.
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc
Confidence 347999999999999888877764 78888888863 3333444444 469999994
No 395
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=49.77 E-value=8.9 Score=37.32 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-++++|++|+|||+.+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4678899999999853
No 396
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=49.68 E-value=8.9 Score=37.83 Aligned_cols=18 Identities=22% Similarity=0.207 Sum_probs=15.0
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
.-++++|++|||||+++-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 397
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=49.59 E-value=25 Score=37.72 Aligned_cols=15 Identities=13% Similarity=-0.044 Sum_probs=12.3
Q ss_pred EEEEcCCCCchHHHH
Q 002040 507 CIGVAKTGSGKTLAF 521 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~ 521 (976)
+.++|++|||||+.+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 666799999999853
No 398
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=49.32 E-value=9 Score=42.27 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=18.4
Q ss_pred HHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 497 ~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
++..++.|.++ +..|.||||||.++
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 34567788774 44589999999764
No 399
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=49.20 E-value=9 Score=36.44 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=15.4
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
+++++.|..|||||++.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999998644
No 400
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=49.10 E-value=11 Score=37.71 Aligned_cols=18 Identities=17% Similarity=0.060 Sum_probs=14.6
Q ss_pred CEEEEcCCCCchHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l 523 (976)
.+|+.||+||||++++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368889999999987544
No 401
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=48.93 E-value=1.1e+02 Score=30.16 Aligned_cols=18 Identities=33% Similarity=0.281 Sum_probs=12.7
Q ss_pred EEEcCCCCchHHHHHHHH
Q 002040 508 IGVAKTGSGKTLAFVLPM 525 (976)
Q Consensus 508 i~~a~TGsGKT~~~~l~i 525 (976)
++.+.-|.|||++.+..+
T Consensus 5 v~s~KGGvGKTT~a~~LA 22 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLS 22 (209)
T ss_dssp EEESSTTSSHHHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHH
Confidence 445789999998754433
No 402
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=48.85 E-value=14 Score=37.04 Aligned_cols=19 Identities=26% Similarity=0.094 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.|.-+.++||+|+|||+.+
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4556888999999999753
No 403
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=48.82 E-value=29 Score=41.36 Aligned_cols=74 Identities=15% Similarity=0.218 Sum_probs=52.4
Q ss_pred eEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChH---HHHHHHhc---CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 542 VGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVA---QQISELKR---GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 542 ~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
..+|+|+|+.-+..++..+.. .++.+..++|+.+.. .+...+.. ..+|+|||. .+..+ .++
T Consensus 322 g~iIf~~s~~~ie~la~~L~~----~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e~G----lDi 388 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEI----RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIGMG----LNL 388 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHH----TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGGSS----CCC
T ss_pred CCEEEEcCHHHHHHHHHHHHh----cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHHCC----cCc
Confidence 346779998877777776665 478899999999876 44555664 369999994 33322 567
Q ss_pred CCceEEEecCcccc
Q 002040 616 RRVTYLVMDEADRM 629 (976)
Q Consensus 616 ~~~~~vVlDEah~~ 629 (976)
.+.+||+-.+.+.
T Consensus 389 -~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 389 -SIRRIIFYSLIKP 401 (677)
T ss_dssp -CBSEEEESCSBC-
T ss_pred -CccEEEECCcccc
Confidence 7889988777653
No 404
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=48.79 E-value=8.9 Score=38.94 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=16.1
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+..+++.|++|||||+++-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568999999999998644
No 405
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=48.79 E-value=6.9 Score=35.44 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=35.2
Q ss_pred HHHHHHhhhcCCcEEEEecCHHH--HHHHHHHHHHCCCCceeccCCCC
Q 002040 704 LLELLGEWYEKGKILIFVHSQEK--CDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 704 l~~~l~~~~~~~kvLIF~~s~~~--~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
|...+..+....++||||.+-.. +..++..|...|+.+..+.|++.
T Consensus 61 l~~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 61 LATRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp HHHHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred HHHHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 33444444456689999998765 78889999999999888889864
No 406
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=48.67 E-value=11 Score=35.34 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.8
Q ss_pred CEEEEcCCCCchHHH
Q 002040 506 DCIGVAKTGSGKTLA 520 (976)
Q Consensus 506 d~i~~a~TGsGKT~~ 520 (976)
-.+|+||+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367889999999975
No 407
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=48.57 E-value=7.6 Score=38.20 Aligned_cols=19 Identities=26% Similarity=0.111 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+.-++++|+.|||||++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3566889999999999864
No 408
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=48.47 E-value=8.5 Score=38.00 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.|.-++++|++|||||+.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4566888899999999863
No 409
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=48.25 E-value=34 Score=34.73 Aligned_cols=63 Identities=16% Similarity=0.099 Sum_probs=45.8
Q ss_pred cCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCC-ceeccCCCCHHHHHHHHHHhccCCccEEEecC
Q 002040 695 RPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQTDRESTISDFKSNVCNLLIATS 772 (976)
Q Consensus 695 ~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~ 772 (976)
.....|-...+.++... .+++||+|++..-+..+...|...++. +..++|+.. ....|+|+|.
T Consensus 116 ~tG~GKT~~a~~~~~~~--~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 116 PTGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp SSSTTHHHHHHHHHHHS--CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCCCHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 33455655544444433 679999999999999999988887887 888888764 2467888884
No 410
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=48.23 E-value=2.2e+02 Score=28.90 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCC
Q 002040 702 LRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP 740 (976)
Q Consensus 702 ~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~ 740 (976)
..+..+|.. ......|||.+-..+..+...|...|+.
T Consensus 175 ~~~~~~l~~--~~~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 175 DGAIKVLTG--ADRPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp HHHHHHHTC---CCCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhC--CCCCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 334444433 2456789999999999999999887765
No 411
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=47.90 E-value=8.2 Score=33.34 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=32.4
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
...+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4568999999988899999999999998888988864
No 412
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=47.72 E-value=9.4 Score=45.87 Aligned_cols=74 Identities=15% Similarity=0.256 Sum_probs=47.4
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHH--HhhcCcEEEEeeCC--------CChHHHH---HHHhc-CCeEEEeCchhHHHHH
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKF--AKVMGVRCVPVYGG--------SGVAQQI---SELKR-GTEIVVCTPGRMIDIL 605 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~--~~~~~~~~~~~~gg--------~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l 605 (976)
+.++||.|+++..+..++..+... +...|+.+..++|+ .+..++. ..+.. ..+|+|||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999888877653 22237888889988 6655543 33333 458999994 22
Q ss_pred HhcCCcccccCCceEEE
Q 002040 606 CTSGGKITNLRRVTYLV 622 (976)
Q Consensus 606 ~~~~~~~~~l~~~~~vV 622 (976)
. .-.++..+.+||
T Consensus 475 ~----~GIDip~v~~VI 487 (699)
T 4gl2_A 475 E----EGLDIKECNIVI 487 (699)
T ss_dssp C----TTSCCCSCCCCE
T ss_pred c----cCCccccCCEEE
Confidence 1 225778888877
No 413
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=47.58 E-value=9.5 Score=37.05 Aligned_cols=18 Identities=22% Similarity=0.069 Sum_probs=14.7
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+.-++++|++|||||+++
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345788999999999864
No 414
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=47.49 E-value=56 Score=34.41 Aligned_cols=70 Identities=14% Similarity=0.171 Sum_probs=50.6
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCcc-----c-ccCCCCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSVA-----A-RGLDVKEL 783 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v~-----~-~GlDi~~v 783 (976)
..++||.||+..-+..++..|... ++.+..++|+.+....... +. ...|+|+|.-. . ..+++..+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999988888753 5788999999887654333 22 37899999521 1 23456667
Q ss_pred cEEEE
Q 002040 784 ELVIN 788 (976)
Q Consensus 784 ~~VI~ 788 (976)
.+||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77774
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=47.39 E-value=10 Score=38.32 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchHHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFVL 523 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~l 523 (976)
.+-+++.||+|||||+++-.
T Consensus 29 ~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 34577889999999987544
No 416
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=47.23 E-value=10 Score=41.98 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=13.2
Q ss_pred EEEEcCCCCchHHHHH
Q 002040 507 CIGVAKTGSGKTLAFV 522 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~ 522 (976)
++|+||||+|||..+.
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 6788999999997643
No 417
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=47.20 E-value=33 Score=41.17 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhh--------------------------------cCcEEEEeeCCCChHHHHHHH
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKV--------------------------------MGVRCVPVYGGSGVAQQISEL 587 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~--------------------------------~~~~~~~~~gg~~~~~~~~~l 587 (976)
+..+||.||++.-+..++..+...+.. ++..+..++||.+..++...+
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 467999999999999888887764211 123478889998876664332
Q ss_pred ---hc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEEec
Q 002040 588 ---KR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMD 624 (976)
Q Consensus 588 ---~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlD 624 (976)
.. ...|||||. .+..+ .++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~~G----idip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLAAG----VNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGGGS----SCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HHhcc----cCCCceEEEEeC
Confidence 33 468999994 23322 577778776654
No 418
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=47.19 E-value=8.4 Score=38.05 Aligned_cols=19 Identities=26% Similarity=0.100 Sum_probs=15.5
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+.-+++.|+.|||||+++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4556888999999999864
No 419
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=47.09 E-value=10 Score=36.53 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=12.9
Q ss_pred CEEEEcCCCCchHHH
Q 002040 506 DCIGVAKTGSGKTLA 520 (976)
Q Consensus 506 d~i~~a~TGsGKT~~ 520 (976)
-.+|+|++|||||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 467889999999975
No 420
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=47.07 E-value=2.3e+02 Score=28.30 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=25.6
Q ss_pred HHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCC
Q 002040 703 RLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGY 739 (976)
Q Consensus 703 ~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~ 739 (976)
.+..+|... .....|||.+-..+..+...|.+.|+
T Consensus 177 ~~~~~l~~~--~~~~ai~~~~d~~a~g~~~al~~~g~ 211 (276)
T 3ksm_A 177 EMLRLLKET--PTIDGLFTPNESTTIGALVAIRQSGM 211 (276)
T ss_dssp HHHHHHHHC--SCCCEEECCSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC--CCceEEEECCchhhhHHHHHHHHcCC
Confidence 344444432 34678999999999999999998875
No 421
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=47.02 E-value=11 Score=36.77 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=12.9
Q ss_pred CEEEEcCCCCchHHH
Q 002040 506 DCIGVAKTGSGKTLA 520 (976)
Q Consensus 506 d~i~~a~TGsGKT~~ 520 (976)
.+.++|+.|+|||+.
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367899999999985
No 422
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.74 E-value=11 Score=37.55 Aligned_cols=29 Identities=14% Similarity=-0.040 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCCCEEEEcCCCCchHHHH
Q 002040 492 PIQAQALPVIMSGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 492 ~~Q~~~i~~il~g~d~i~~a~TGsGKT~~~ 521 (976)
+.+... ..+..+.-++++|++|||||+++
T Consensus 14 ~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 14 RSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred HHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 444444 33456677889999999999864
No 423
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=46.73 E-value=19 Score=31.36 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=32.0
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCC-ceeccCCCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKD 749 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~ 749 (976)
...++||||.+-..+..++..|...|+. +..|.|++.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4568999999988899999999999995 888889864
No 424
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=46.65 E-value=12 Score=35.94 Aligned_cols=17 Identities=24% Similarity=0.237 Sum_probs=14.5
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.++++|++|||||+++-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 68899999999998643
No 425
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=46.59 E-value=11 Score=39.77 Aligned_cols=17 Identities=29% Similarity=0.239 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
..++++||+|+|||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 36899999999999763
No 426
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=46.51 E-value=10 Score=37.00 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.7
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+.-++++|++|||||+++
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3566889999999999864
No 427
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=46.35 E-value=56 Score=37.20 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+...+|++++..-+..+...+ ...+..+..++|+.+..... ..+.. ..+|+|||+..+ ..+ .++
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L----~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~----~~G----iDi 414 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLI----KNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVF----STG----ISV 414 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHH----HTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHH----HHS----CCC
T ss_pred CCCeEEEEecHHHHHHHHHHH----HHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChh----hcc----ccc
Confidence 344555566555555444444 34556888889988765442 33333 468999996654 322 578
Q ss_pred CCceEEEecCcc
Q 002040 616 RRVTYLVMDEAD 627 (976)
Q Consensus 616 ~~~~~vVlDEah 627 (976)
..+.+||+..+.
T Consensus 415 p~v~~vi~~~~~ 426 (510)
T 2oca_A 415 KNLHHVVLAHGV 426 (510)
T ss_dssp CSEEEEEESSCC
T ss_pred ccCcEEEEeCCC
Confidence 889999987776
No 428
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=46.23 E-value=10 Score=36.72 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.5
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-++++|++|||||+++
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999864
No 429
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=46.10 E-value=13 Score=36.34 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=23.0
Q ss_pred EEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHH
Q 002040 507 CIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRK 562 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~ 562 (976)
++|.|++|||||..+. -+. . . +..+++++.-...-..+...+..
T Consensus 2 ilV~Gg~~SGKS~~A~-~la----~------~-~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-ALI----G------D-APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHH-HHH----C------S-CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHH-HHH----h------c-CCCeEEEecCCCCCHHHHHHHHH
Confidence 6889999999996433 222 1 1 33467777754433334333333
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=46.00 E-value=11 Score=37.57 Aligned_cols=17 Identities=18% Similarity=0.210 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.+++.|++|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998644
No 431
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=45.93 E-value=7.7 Score=33.97 Aligned_cols=38 Identities=11% Similarity=0.161 Sum_probs=32.1
Q ss_pred hcCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCC
Q 002040 712 YEKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 712 ~~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
....+++|||.+-..+...+..|...||.++.+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 34568999999888888899999999999888888763
No 432
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=45.83 E-value=8.1 Score=39.16 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=11.5
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.|.-+.++||+|||||+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp CCCEEEEECSCC----CH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 566788899999999985
No 433
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=45.39 E-value=30 Score=40.78 Aligned_cols=54 Identities=19% Similarity=0.195 Sum_probs=39.5
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTP 598 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp 598 (976)
+.++||.|+|+.-|..++..+.. .++.+..++|. .....+..+.. ...|+|||.
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~----~g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd 409 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD 409 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHH----TTCCEEEECTT-THHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEECChhHHHHHHHHHHH----cCCcEEEEChH-HHHHHHHhhcCCCcEEEEECc
Confidence 45799999999999888877776 47888888875 33333444443 468999994
No 434
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=45.34 E-value=11 Score=41.32 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=18.8
Q ss_pred HHHHHhcCCCE--EEEcCCCCchHHHH
Q 002040 497 ALPVIMSGRDC--IGVAKTGSGKTLAF 521 (976)
Q Consensus 497 ~i~~il~g~d~--i~~a~TGsGKT~~~ 521 (976)
.+..++.|.++ +..|.||||||.++
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 56667788774 44589999999763
No 435
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=45.32 E-value=11 Score=37.66 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+..+++.|++|||||+++-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3468899999999998643
No 436
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=45.24 E-value=13 Score=36.48 Aligned_cols=41 Identities=17% Similarity=0.171 Sum_probs=24.5
Q ss_pred cCCceEEEecCcccc--cccCCchHHHHHHHhcCCCCcEEEEeccC
Q 002040 615 LRRVTYLVMDEADRM--FDMGFEPQITRIVQNIRPDRQTVLFSATF 658 (976)
Q Consensus 615 l~~~~~vVlDEah~~--~~~~f~~~i~~il~~~~~~~q~i~~SAT~ 658 (976)
+....+|||||+..| .+..|...+..++... ..+|+-|.|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~---~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTP---GTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCS---SCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCC---CcEEEEEeec
Confidence 566789999998766 3333555555555432 2345446664
No 437
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=45.17 E-value=11 Score=36.50 Aligned_cols=17 Identities=24% Similarity=0.225 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
-++++|++|||||+++-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47888999999998643
No 438
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=45.16 E-value=12 Score=37.43 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=15.6
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
...+++.|++|||||+++-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998644
No 439
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=45.05 E-value=12 Score=40.51 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchHHH
Q 002040 505 RDCIGVAKTGSGKTLA 520 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~ 520 (976)
..++++||+|+|||+.
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5799999999999975
No 440
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=45.02 E-value=19 Score=40.60 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=45.0
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc-CCeEEEeCchhHHHHHHhcCCcccccCCc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR-GTEIVVCTPGRMIDILCTSGGKITNLRRV 618 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~ 618 (976)
+.++||+||++.-|..++..+.. .++.+..++|... ...+..+.. ...|+|||. .+... .++..
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~~G----iDip~- 252 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRK----SGKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEMG----ANFRA- 252 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHT----TTCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGGSS----CCCCC-
T ss_pred CCCEEEEcCCHHHHHHHHHHHHH----cCCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHHhC----cCCCC-
Confidence 34789999999999888777765 4778888877653 223333433 469999994 33322 45666
Q ss_pred eEEE
Q 002040 619 TYLV 622 (976)
Q Consensus 619 ~~vV 622 (976)
.+||
T Consensus 253 ~~VI 256 (451)
T 2jlq_A 253 GRVI 256 (451)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 5555
No 441
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=44.87 E-value=14 Score=35.73 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
..++++|++|||||+++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458899999999998643
No 442
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=44.82 E-value=12 Score=37.39 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=14.1
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.+++.|++|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 443
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=44.76 E-value=11 Score=37.66 Aligned_cols=18 Identities=17% Similarity=0.001 Sum_probs=14.5
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
..+.+.|++|||||+++-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457888999999998643
No 444
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=44.65 E-value=12 Score=31.82 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=31.0
Q ss_pred CcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCC
Q 002040 715 GKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 715 ~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
.+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988888899999999999888888874
No 445
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=44.58 E-value=11 Score=37.96 Aligned_cols=18 Identities=22% Similarity=0.141 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+..++++|++|||||+++
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356889999999999864
No 446
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=44.48 E-value=12 Score=36.67 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=13.1
Q ss_pred EEEEcCCCCchHHHH
Q 002040 507 CIGVAKTGSGKTLAF 521 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~ 521 (976)
+++.|++|||||++.
T Consensus 3 I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 3 IAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCccCHHHHH
Confidence 688999999999863
No 447
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=44.43 E-value=39 Score=40.62 Aligned_cols=74 Identities=18% Similarity=0.232 Sum_probs=49.6
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhh-----------------------------cCcEEEEeeCCCChHHHHH---HH
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKV-----------------------------MGVRCVPVYGGSGVAQQIS---EL 587 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~-----------------------------~~~~~~~~~gg~~~~~~~~---~l 587 (976)
+..+||.||++.-|..++..+...+.. +...+..++||.+..++.. .+
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 457899999999999888887764321 1234788899988776642 33
Q ss_pred hc-CCeEEEeCchhHHHHHHhcCCcccccCCceEEE
Q 002040 588 KR-GTEIVVCTPGRMIDILCTSGGKITNLRRVTYLV 622 (976)
Q Consensus 588 ~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vV 622 (976)
.. ...|||||. .+..+ .++..+.+||
T Consensus 317 ~~g~~~vlvaT~-----~l~~G----vdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TLSAG----INTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEECS-----TTGGG----CCCCBSEEEE
T ss_pred HCCCCeEEEECc-----Hhhcc----CCCCceEEEE
Confidence 33 458999994 22222 5677777654
No 448
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=44.41 E-value=13 Score=40.53 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=14.9
Q ss_pred cCCC--EEEEcCCCCchHHHH
Q 002040 503 SGRD--CIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d--~i~~a~TGsGKT~~~ 521 (976)
.|.+ ++..|.||||||.++
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 466799999999874
No 449
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=44.41 E-value=8.4 Score=33.46 Aligned_cols=37 Identities=11% Similarity=0.178 Sum_probs=32.1
Q ss_pred cCCcEEEEecCHHHHHHHHHHHHHCCCCceeccCCCC
Q 002040 713 EKGKILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKD 749 (976)
Q Consensus 713 ~~~kvLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~ 749 (976)
...+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4568999999988888999999999999888988864
No 450
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=44.27 E-value=11 Score=39.81 Aligned_cols=17 Identities=29% Similarity=0.208 Sum_probs=14.0
Q ss_pred CCEEEEcCCCCchHHHH
Q 002040 505 RDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~ 521 (976)
.-+|++|++|||||+.+
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999863
No 451
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=44.15 E-value=6.8 Score=40.66 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.1
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
.+.+++.||+|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 356899999999999764
No 452
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=44.10 E-value=11 Score=36.57 Aligned_cols=19 Identities=32% Similarity=0.183 Sum_probs=15.4
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+..++++|.+|||||+++-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568889999999998643
No 453
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=44.05 E-value=12 Score=35.46 Aligned_cols=18 Identities=22% Similarity=0.102 Sum_probs=14.8
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
..++++|++|||||+++-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998643
No 454
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=43.95 E-value=10 Score=37.64 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=13.8
Q ss_pred CCCEEEEcCCCCchHHH
Q 002040 504 GRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~ 520 (976)
|.-+.|+|++|||||+.
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44577889999999975
No 455
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=43.91 E-value=30 Score=39.02 Aligned_cols=78 Identities=17% Similarity=0.125 Sum_probs=53.4
Q ss_pred CcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHCCCC-ceeccCCCCHHHHHHHHHHhccCCccEEEecC-c
Q 002040 696 PESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKHGYP-CLSLHGAKDQTDRESTISDFKSNVCNLLIATS-V 773 (976)
Q Consensus 696 ~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~~~~-~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~-v 773 (976)
....|-...+..+... ..++||+||+..-+......|...++. +..+||+... ...|+|+|. .
T Consensus 117 TGsGKT~~~l~~i~~~--~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-------------~~~Ivv~T~~~ 181 (472)
T 2fwr_A 117 TGSGKTHVAMAAINEL--STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-------------LKPLTVSTYDS 181 (472)
T ss_dssp TTSCHHHHHHHHHHHH--CSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC-------------CCSEEEEEHHH
T ss_pred CCCCHHHHHHHHHHHc--CCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC-------------cCCEEEEEcHH
Confidence 3445555544444443 679999999999999999999888888 9999998752 467899985 2
Q ss_pred ccccCC-C-CCCcEEEE
Q 002040 774 AARGLD-V-KELELVIN 788 (976)
Q Consensus 774 ~~~GlD-i-~~v~~VI~ 788 (976)
+...++ + ..+.+||.
T Consensus 182 l~~~~~~~~~~~~liIv 198 (472)
T 2fwr_A 182 AYVNAEKLGNRFMLLIF 198 (472)
T ss_dssp HHHTHHHHTTTCSEEEE
T ss_pred HHHHHHHhcCCCCEEEE
Confidence 222221 1 33666664
No 456
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=43.74 E-value=81 Score=32.64 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHH---HHHHh
Q 002040 512 KTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQ---ISELK 588 (976)
Q Consensus 512 ~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~---~~~l~ 588 (976)
...+||... +.-++..+.. .+.++||.|.+...+..+...+... +|+.+..++|+.+..+. +..+.
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhc
Confidence 356889865 5555555433 2567999999988877666655442 47788889998875544 34444
Q ss_pred cC--Ce-EEEeCchhHHHHHHhcCCcccccCCceEEEe
Q 002040 589 RG--TE-IVVCTPGRMIDILCTSGGKITNLRRVTYLVM 623 (976)
Q Consensus 589 ~~--~~-Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVl 623 (976)
.+ +. |+++|. .. +.-.+|..+.+||+
T Consensus 161 ~~~~~~v~L~st~-~~--------g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 161 NNPSVKFIVLSVK-AG--------GFGINLTSANRVIH 189 (271)
T ss_dssp HCTTCCEEEEECC-TT--------CCCCCCTTCSEEEE
T ss_pred CCCCCCEEEEehh-hh--------cCCcCcccCCEEEE
Confidence 44 45 455552 21 12256777777765
No 457
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=43.65 E-value=67 Score=28.20 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=38.8
Q ss_pred HHHHHhhhcCCcEEEEe------cCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHH
Q 002040 705 LELLGEWYEKGKILIFV------HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~------~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~ 758 (976)
...|.......+++||+ ++...|..+...|...|+.+..+.=..+...+..+..
T Consensus 6 ~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 6 NLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 34455555678999999 5788999999999999988776654445555554433
No 458
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=43.58 E-value=32 Score=37.64 Aligned_cols=16 Identities=13% Similarity=0.098 Sum_probs=11.7
Q ss_pred cCCCCchHHHHHHHHH
Q 002040 511 AKTGSGKTLAFVLPML 526 (976)
Q Consensus 511 a~TGsGKT~~~~l~il 526 (976)
+.-|.|||++++..+.
T Consensus 151 ~KGGvGKTT~a~nLA~ 166 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAI 166 (373)
T ss_dssp SSTTSSHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHH
Confidence 5889999987554443
No 459
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=43.48 E-value=32 Score=42.82 Aligned_cols=71 Identities=15% Similarity=0.260 Sum_probs=46.3
Q ss_pred CCcEEEEecCHHHHHHHHHHHHHC----CCCceeccCCCCHHHHHHHHHHhccCCccEEEecCc-----cccc-C-CCCC
Q 002040 714 KGKILIFVHSQEKCDALFRDLLKH----GYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSV-----AARG-L-DVKE 782 (976)
Q Consensus 714 ~~kvLIF~~s~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~v-----~~~G-l-Di~~ 782 (976)
.+++||.||+..-+..++..|... ++.+..+||+.+...+...+. +..+|||+|.- +..+ + .+..
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 568999999999888887777664 899999999986554322221 24679999951 1122 3 4566
Q ss_pred CcEEEE
Q 002040 783 LELVIN 788 (976)
Q Consensus 783 v~~VI~ 788 (976)
+.+||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 460
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=43.12 E-value=15 Score=39.64 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.4
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
....+|+.|++|+|||..
T Consensus 44 ~~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GGCCEEEECCGGGCTTHH
T ss_pred CCceEEEECCCCccHHHH
Confidence 345799999999999975
No 461
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=43.09 E-value=12 Score=36.10 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.|.-++++|++|||||+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556788999999999863
No 462
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=43.08 E-value=13 Score=36.59 Aligned_cols=18 Identities=22% Similarity=0.265 Sum_probs=14.7
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
..++++|++|||||+++-
T Consensus 21 ~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999998643
No 463
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.98 E-value=18 Score=32.57 Aligned_cols=29 Identities=21% Similarity=0.466 Sum_probs=26.4
Q ss_pred ceeeeecCCcHHHHHHHHHHHHHHHHHHH
Q 002040 930 KLYLFIEGPTEQSVKRAKAELKRVLEDFT 958 (976)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 958 (976)
-|+++|.|++...|++|+.+|..+|.+.-
T Consensus 73 ~l~V~I~a~~~e~i~~A~~~Ie~Ll~~v~ 101 (119)
T 2yqr_A 73 PMYIYISHPKPEGLAAAKKLCENLLQTVH 101 (119)
T ss_dssp BCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHHhhchH
Confidence 39999999999999999999999998754
No 464
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=42.85 E-value=77 Score=27.58 Aligned_cols=54 Identities=11% Similarity=0.143 Sum_probs=38.7
Q ss_pred HHHHHhhhcCCcEEEEec------CHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHH
Q 002040 705 LELLGEWYEKGKILIFVH------SQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTIS 758 (976)
Q Consensus 705 ~~~l~~~~~~~kvLIF~~------s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~ 758 (976)
...+.......+++||.. ..-.|..+...|...|+.+..++=......+..+..
T Consensus 8 ~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 8 KDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 344555556789999998 488999999999999988776654444554444443
No 465
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=42.61 E-value=5.2 Score=45.67 Aligned_cols=70 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHH---HHHhc-CCeEEEeCchhHHHHHHhcCCccccc
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQI---SELKR-GTEIVVCTPGRMIDILCTSGGKITNL 615 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~~Iiv~Tp~~L~~~l~~~~~~~~~l 615 (976)
+.++||.||++.-|..++..+.. .+..+..++|+.+..... ..+.. ..+|+|||. .+..+ .++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~~G----lDi 399 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSK----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCARG----IDV 399 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHh----CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccccC----Ccc
Confidence 45789999999988887777765 467788888887655442 22322 468999993 33322 567
Q ss_pred CCceEEE
Q 002040 616 RRVTYLV 622 (976)
Q Consensus 616 ~~~~~vV 622 (976)
..+.+||
T Consensus 400 p~v~~VI 406 (479)
T 3fmp_B 400 EQVSVVI 406 (479)
T ss_dssp -------
T ss_pred ccCCEEE
Confidence 7777776
No 466
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=42.45 E-value=29 Score=39.40 Aligned_cols=20 Identities=20% Similarity=0.253 Sum_probs=16.3
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
...++|++|++|+|||..+-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34689999999999998643
No 467
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=42.44 E-value=13 Score=36.58 Aligned_cols=15 Identities=33% Similarity=0.149 Sum_probs=12.8
Q ss_pred EEEEcCCCCchHHHH
Q 002040 507 CIGVAKTGSGKTLAF 521 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~ 521 (976)
+.+.|++|||||+++
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999863
No 468
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=42.35 E-value=13 Score=36.43 Aligned_cols=16 Identities=19% Similarity=0.192 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-++++|++|||||+++
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788899999999864
No 469
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=41.85 E-value=13 Score=36.80 Aligned_cols=17 Identities=29% Similarity=-0.062 Sum_probs=13.7
Q ss_pred CCCEEEEcCCCCchHHH
Q 002040 504 GRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~ 520 (976)
+.-+.++|++|||||+.
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 34467889999999985
No 470
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=41.83 E-value=8.8 Score=37.12 Aligned_cols=16 Identities=31% Similarity=0.148 Sum_probs=13.0
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-+.++|++|||||+.+
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999763
No 471
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=41.53 E-value=14 Score=34.82 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=13.9
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.+++.|.+|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 472
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=41.46 E-value=11 Score=36.14 Aligned_cols=19 Identities=21% Similarity=-0.066 Sum_probs=11.6
Q ss_pred CCCEEEEcCCCCchHHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~~ 522 (976)
+.-++++|..|||||+++-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 473
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=41.43 E-value=13 Score=36.65 Aligned_cols=19 Identities=26% Similarity=-0.132 Sum_probs=14.9
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.+.-+.++|++|||||+.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3455788899999999853
No 474
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=41.42 E-value=14 Score=40.57 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=13.6
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
-++|+|+||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999864
No 475
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=41.41 E-value=32 Score=41.23 Aligned_cols=84 Identities=17% Similarity=0.258 Sum_probs=55.6
Q ss_pred chHHHHH-HHHHHhhhcCCcEEEEecCHHHHHHHHHHHHH---CCCCceeccCCCCHHHHHHHHHHhccCCccEEEecC-
Q 002040 698 SDRFLRL-LELLGEWYEKGKILIFVHSQEKCDALFRDLLK---HGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATS- 772 (976)
Q Consensus 698 ~~k~~~l-~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~---~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vLVaT~- 772 (976)
+.|-... +.++..+..++++||.+|++.-+..++..+.. .|+.+..++|+.....+ ..+..+|+|+|.
T Consensus 51 sGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tpe 123 (702)
T 2p6r_A 51 AGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTSE 123 (702)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEHH
T ss_pred cHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECHH
Confidence 4444333 33333334468999999999999998888743 37889999998765432 124788999995
Q ss_pred ----cccccCC-CCCCcEEEE
Q 002040 773 ----VAARGLD-VKELELVIN 788 (976)
Q Consensus 773 ----v~~~GlD-i~~v~~VI~ 788 (976)
.+..+.. +..+.+||.
T Consensus 124 ~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 124 KADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHHcChhHHhhcCEEEE
Confidence 2223322 567777775
No 476
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=41.28 E-value=1.2e+02 Score=36.83 Aligned_cols=93 Identities=17% Similarity=0.226 Sum_probs=54.3
Q ss_pred CCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCHHHHHHHHHHHHHHHhhcCcEEEEeeCCCChHHHHHHHhc----
Q 002040 514 GSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTRELVQQIHSDIRKFAKVMGVRCVPVYGGSGVAQQISELKR---- 589 (976)
Q Consensus 514 GsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~---- 589 (976)
.|||... +.-++..+.. .+.++||.+..+..+..+...+ ...|+.+..+.|+.+..+....+..
T Consensus 554 ~s~K~~~-L~~lL~~~~~-------~g~kvLIFsq~~~~ld~L~~~L----~~~g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLKK-------DGHRVLIFSQMVRMLDILGDYL----SIKGINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp TCHHHHH-HHHHHHHHTT-------TTCCEEEEESCHHHHHHHHHHH----HHHTCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred cChHHHH-HHHHHHHHhh-------CCCeEEEEechHHHHHHHHHHH----HhCCCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 3566543 4444444432 3668999999987665554444 4468889999999887766544432
Q ss_pred CCe--EEEeCchhHHHHHHhcCCcccccCCceEEEecCc
Q 002040 590 GTE--IVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEA 626 (976)
Q Consensus 590 ~~~--Iiv~Tp~~L~~~l~~~~~~~~~l~~~~~vVlDEa 626 (976)
+.. |+++|.. .... -.+|..+.+||+=+.
T Consensus 622 ~~~~~v~LlSt~----agg~----GlNL~~a~~VI~~D~ 652 (800)
T 3mwy_W 622 DSNDFVFLLSTR----AGGL----GINLMTADTVVIFDS 652 (800)
T ss_dssp TCSCCCEEEEHH----HHTT----TCCCTTCCEEEESSC
T ss_pred CCCceEEEEecc----cccC----CCCccccceEEEecC
Confidence 112 3444432 2211 157777887776333
No 477
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=41.26 E-value=14 Score=42.47 Aligned_cols=39 Identities=10% Similarity=-0.058 Sum_probs=24.2
Q ss_pred cCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEcc
Q 002040 503 SGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAP 548 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~P 548 (976)
.|.-++|.|++|+|||..++..+. ++..+ .+..|+++.-
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~-~~a~~------~g~~vl~~s~ 279 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQAL-QWGTA------MGKKVGLAML 279 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHH-HHTTT------SCCCEEEEES
T ss_pred CCeEEEEeecCCCCchHHHHHHHH-HHHHh------cCCcEEEEec
Confidence 345688889999999976444444 43321 1445666653
No 478
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=41.24 E-value=14 Score=37.79 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=15.0
Q ss_pred CCCEEEEcCCCCchHHHH
Q 002040 504 GRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 504 g~d~i~~a~TGsGKT~~~ 521 (976)
+.-++++|+.|||||+.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456889999999999863
No 479
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=41.05 E-value=14 Score=36.43 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=13.4
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
.+.++|++|||||+++
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4778899999999853
No 480
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=40.94 E-value=12 Score=38.18 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.2
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.|.-+.++||.|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 466788999999999973
No 481
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=40.73 E-value=15 Score=35.58 Aligned_cols=15 Identities=33% Similarity=0.151 Sum_probs=13.0
Q ss_pred EEEEcCCCCchHHHH
Q 002040 507 CIGVAKTGSGKTLAF 521 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~ 521 (976)
+++.|..|||||++.
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999864
No 482
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=40.53 E-value=14 Score=36.78 Aligned_cols=17 Identities=18% Similarity=0.030 Sum_probs=14.0
Q ss_pred CEEEEcCCCCchHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~ 522 (976)
.+++.|++|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999998643
No 483
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=40.50 E-value=22 Score=37.98 Aligned_cols=14 Identities=29% Similarity=0.271 Sum_probs=12.4
Q ss_pred EEEEcCCCCchHHH
Q 002040 507 CIGVAKTGSGKTLA 520 (976)
Q Consensus 507 ~i~~a~TGsGKT~~ 520 (976)
++|.|+.|||||+.
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67889999999984
No 484
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=40.34 E-value=28 Score=33.65 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=16.2
Q ss_pred CEEEEcCCCCchHHHHHHHHHHHH
Q 002040 506 DCIGVAKTGSGKTLAFVLPMLRHI 529 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~~l~il~~l 529 (976)
-++++|+.|||||+. +..++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 467889999999974 44444443
No 485
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=40.33 E-value=12 Score=39.85 Aligned_cols=18 Identities=11% Similarity=0.122 Sum_probs=15.6
Q ss_pred cCCCEEEEcCCCCchHHH
Q 002040 503 SGRDCIGVAKTGSGKTLA 520 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~ 520 (976)
.|.-+.|+||+|||||+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 567788999999999974
No 486
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=40.31 E-value=15 Score=36.33 Aligned_cols=20 Identities=20% Similarity=0.081 Sum_probs=16.0
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+.-++++|+.|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 35668899999999998643
No 487
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=39.91 E-value=51 Score=38.47 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=50.6
Q ss_pred CCeEEEEccCHHHHHHHHHHHHHHHhh----cCcEEEEeeCCCCh--HHHHHHHhcC-Ce---EEEeCchhHHHHHHhcC
Q 002040 540 GPVGLIMAPTRELVQQIHSDIRKFAKV----MGVRCVPVYGGSGV--AQQISELKRG-TE---IVVCTPGRMIDILCTSG 609 (976)
Q Consensus 540 ~~~vLIl~Ptr~La~Q~~~~~~~~~~~----~~~~~~~~~gg~~~--~~~~~~l~~~-~~---Iiv~Tp~~L~~~l~~~~ 609 (976)
+.++||+|+++.-|..++..+...... .+..+..++|.... ...+..+..+ .. |+|||. ++..+
T Consensus 439 ~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~~G- 512 (590)
T 3h1t_A 439 FAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLTTG- 512 (590)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTTTT-
T ss_pred CccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhhcC-
Confidence 568999999999999999988776432 22335666676543 2234555543 22 666662 22222
Q ss_pred CcccccCCceEEEecCcc
Q 002040 610 GKITNLRRVTYLVMDEAD 627 (976)
Q Consensus 610 ~~~~~l~~~~~vVlDEah 627 (976)
.++..+.+||++..-
T Consensus 513 ---iDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 513 ---VDAPTCKNVVLARVV 527 (590)
T ss_dssp ---CCCTTEEEEEEESCC
T ss_pred ---ccchheeEEEEEecC
Confidence 578889999985553
No 488
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=39.76 E-value=18 Score=35.94 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.9
Q ss_pred CEEEEcCCCCchHHH
Q 002040 506 DCIGVAKTGSGKTLA 520 (976)
Q Consensus 506 d~i~~a~TGsGKT~~ 520 (976)
-.+|+|++|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 467889999999975
No 489
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=39.52 E-value=16 Score=35.52 Aligned_cols=16 Identities=25% Similarity=0.162 Sum_probs=13.4
Q ss_pred EEEEcCCCCchHHHHH
Q 002040 507 CIGVAKTGSGKTLAFV 522 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~ 522 (976)
+++.|+.|||||++.-
T Consensus 3 I~l~G~~GsGKsT~~~ 18 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQ 18 (197)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6788999999998743
No 490
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=39.41 E-value=15 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=14.9
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
..+++.|++|||||+++-
T Consensus 6 ~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458889999999998643
No 491
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=39.27 E-value=15 Score=36.35 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=16.2
Q ss_pred cCCCEEEEcCCCCchHHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~~ 522 (976)
.+.-++++|+.|||||++.-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45668899999999998643
No 492
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=39.17 E-value=79 Score=27.10 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=37.0
Q ss_pred HHhhhcCCcEEEEe------cCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHh
Q 002040 708 LGEWYEKGKILIFV------HSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDF 760 (976)
Q Consensus 708 l~~~~~~~kvLIF~------~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F 760 (976)
+.......+++||+ ++...|..+...|...++.+..+.=...+..+..+...+
T Consensus 10 ~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~ 68 (105)
T 2yan_A 10 LKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYS 68 (105)
T ss_dssp HHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred HHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHH
Confidence 33334456899998 567789999999999888877776655555555554444
No 493
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=39.16 E-value=16 Score=36.76 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=13.6
Q ss_pred EEEEcCCCCchHHHHH
Q 002040 507 CIGVAKTGSGKTLAFV 522 (976)
Q Consensus 507 ~i~~a~TGsGKT~~~~ 522 (976)
+++.|++|||||+++-
T Consensus 3 I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999998643
No 494
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=38.92 E-value=16 Score=37.84 Aligned_cols=18 Identities=22% Similarity=0.004 Sum_probs=14.6
Q ss_pred CCEEEEcCCCCchHHHHH
Q 002040 505 RDCIGVAKTGSGKTLAFV 522 (976)
Q Consensus 505 ~d~i~~a~TGsGKT~~~~ 522 (976)
.-++++|.+|||||+.+-
T Consensus 5 ~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHH
Confidence 357889999999998643
No 495
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=38.71 E-value=1.7e+02 Score=33.07 Aligned_cols=112 Identities=11% Similarity=0.079 Sum_probs=73.4
Q ss_pred eEEEEecCcchHHHHHHHHHHhhhcCCcEEEEecCHHHHHHHHHHHHHC-CCCceecc-------CCC-C----HHHHHH
Q 002040 689 TQLVEVRPESDRFLRLLELLGEWYEKGKILIFVHSQEKCDALFRDLLKH-GYPCLSLH-------GAK-D----QTDRES 755 (976)
Q Consensus 689 ~q~~~~~~~~~k~~~l~~~l~~~~~~~kvLIF~~s~~~~~~l~~~L~~~-~~~~~~lh-------g~~-~----~~~R~~ 755 (976)
.+.+.-...+.+...+..++.. .+.++||.|++...+..|+..|... +-.|..+- ... + ...|..
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~--~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~fp~~e~lpyd~~~p~~~~~~~Rl~ 93 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER--HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH--SSSCEEEEESSHHHHHHHHHHHHHTCSSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEEeCcccccccccCCChHHHHHHHH
Confidence 3444555666676666666654 2568999999999999999999864 22222221 111 1 145788
Q ss_pred HHHHhccCCccEEEecCcccccCCCC-----CCcEEEEeCCCCCHHHHHHHh
Q 002040 756 TISDFKSNVCNLLIATSVAARGLDVK-----ELELVINFDAPNHYEDYVHRV 802 (976)
Q Consensus 756 ~~~~F~~g~~~vLVaT~v~~~GlDi~-----~v~~VI~~d~p~s~~~y~Qr~ 802 (976)
++..+..+...|||+|-.+..+.=.| ...+.|..+...+...+.++.
T Consensus 94 ~l~~L~~~~~~ivv~sv~al~~~~~p~~~~~~~~~~l~~G~~~~~~~l~~~L 145 (483)
T 3hjh_A 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 (483)
T ss_dssp HHHHGGGCCSSEEEEEHHHHHBCCCCHHHHHHTCEEEETTCCCCHHHHHHHH
T ss_pred HHHHHHhCCCCEEEEEHHHHhhcCCCHHHHhhCeEEEECCCCcCHHHHHHHH
Confidence 88888888888888885444333333 245677778888888777664
No 496
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=38.69 E-value=82 Score=27.14 Aligned_cols=52 Identities=15% Similarity=0.383 Sum_probs=43.9
Q ss_pred EEEEecCHHHHHHHHHHHHHCCCCceeccCCCCHHHHHHHHHHhccCCccEE
Q 002040 717 ILIFVHSQEKCDALFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLL 768 (976)
Q Consensus 717 vLIF~~s~~~~~~l~~~L~~~~~~~~~lhg~~~~~~R~~~~~~F~~g~~~vL 768 (976)
.+||....+.+..+...++..|+.++.++++.+...|..-+..|......|-
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvr 56 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVR 56 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEE
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCcee
Confidence 4678888888889999999999999999999999999999999976554443
No 497
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=38.66 E-value=16 Score=35.77 Aligned_cols=16 Identities=25% Similarity=0.073 Sum_probs=13.3
Q ss_pred CEEEEcCCCCchHHHH
Q 002040 506 DCIGVAKTGSGKTLAF 521 (976)
Q Consensus 506 d~i~~a~TGsGKT~~~ 521 (976)
.+.|+|++|||||++.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678899999999864
No 498
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=38.39 E-value=21 Score=32.76 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=25.1
Q ss_pred ceeeeecCCcHHHHHHHHHHHHHHHHH
Q 002040 930 KLYLFIEGPTEQSVKRAKAELKRVLED 956 (976)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 956 (976)
-|+++|.|++...|..|+.+|+.+|.+
T Consensus 73 ~lhV~I~a~~~e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 73 PLHALVTANTMENVKKAVEQIRNILKQ 99 (131)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred CeEEEEEECCHHHHHHHHHHHHHHHhc
Confidence 499999999999999999999999865
No 499
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=37.96 E-value=16 Score=36.65 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=0.0
Q ss_pred cCCCEEEEcCCCCchHHHH
Q 002040 503 SGRDCIGVAKTGSGKTLAF 521 (976)
Q Consensus 503 ~g~d~i~~a~TGsGKT~~~ 521 (976)
.|.-+.++||.|||||+.+
T Consensus 34 ~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
No 500
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=37.87 E-value=40 Score=47.29 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHcCCCCCcHHHHHHHHH---HhcCCCEEEEcCCCCchHHHHHHHHHHHHhcCCCCCCCCCCeEEEEccCH
Q 002040 474 LTSKIMETIRKLNYEKPMPIQAQALPV---IMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVAAGDGPVGLIMAPTR 550 (976)
Q Consensus 474 l~~~l~~~l~~~~~~~p~~~Q~~~i~~---il~g~d~i~~a~TGsGKT~~~~l~il~~l~~~~~~~~~~~~~vLIl~Ptr 550 (976)
|...+...+...|+...-.+-..++.. +...+.++++||||||||. ++-+|...+.. ..+....+.+|-|--
T Consensus 873 l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt--~~~~L~~al~~---l~~~~~~~~~iNPKa 947 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLVTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTT--SWEVYLEAIEQ---VDNIKSEAHVMDPKA 947 (3245)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHH--HHHHHHHHHTT---TTTCEEEEEEECTTT
T ss_pred HHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHH--HHHHHHHHHHH---hhCCCceEEEECCCC
Q ss_pred HHHHHHH
Q 002040 551 ELVQQIH 557 (976)
Q Consensus 551 ~La~Q~~ 557 (976)
.-..|+|
T Consensus 948 it~~eLy 954 (3245)
T 3vkg_A 948 ITKDQLF 954 (3245)
T ss_dssp SCHHHHH
T ss_pred Cchhhhc
Done!